Query 004521
Match_columns 747
No_of_seqs 401 out of 4104
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 17:43:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004521.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1830-1834//hhsearch_pdb/004521hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 373.8 19.6 252 440-707 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 369.0 18.9 250 440-705 13-288 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 366.8 20.2 250 440-705 26-305 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 364.1 19.4 251 438-704 34-298 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 360.0 18.6 261 430-705 54-346 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 349.6 18.1 241 440-699 24-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 347.7 22.4 241 439-699 150-400 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 347.0 21.6 240 440-699 74-323 (346)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 344.2 18.1 255 440-704 3-295 (303)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 342.1 21.2 253 439-713 57-327 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=373.76 Aligned_cols=252 Identities=29% Similarity=0.457 Sum_probs=202.3
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEE
Q ss_conf 39785542142498009999966------984999999134331068999999999830599732337748994982279
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLV------DGQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLL 513 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~l 513 (747)
++|.+.++||+|+||.||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEECCCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCC
Q ss_conf 9950799994467631289------------8767856789999999999998341599946732667683798589994
Q 004521 514 IYEFMPNKSLDSFIFDQTR------------RTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNP 581 (747)
Q Consensus 514 V~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ 581 (747)
||||+++|+|.+++..... ...++|..++.|+.|+|.||+|||+.+ |+||||||+||||++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEC---------CCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 47125675003899875444402102---------37888844640237899999881-998999988764022448677
Q 004521 582 KISDFGLVRTFGGDETEGNTNRVVGT---------YDGQFSIKSDVFSFGILLLEIVS-GKKNRGFYRSDTKVNLIGHLW 651 (747)
Q Consensus 582 ki~DfGla~~~~~~~~~~~~~~~~~~---------~~~~~s~~sDVwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~ 651 (747)
||+|||+|+...............++ .+..++.++|||||||+||||+| |+.||.... ....+..+
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~---~~~~~~~i- 273 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS---NTEAIDCI- 273 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC---HHHHHHHH-
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC---HHHHHHHH-
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989---99999999-
Q ss_pred HCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 21986522430110669999999999999761689999999988999985489899
Q 004521 652 DEGIPLRLIDACIQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSEILL 707 (747)
Q Consensus 652 ~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~~~~ 707 (747)
..+......+. . ...+.+++.+||+.||++||||.+|++.|+.+.+.
T Consensus 274 ~~g~~~~~p~~-----~----~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 TQGRELERPRA-----C----PPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHTCCCCCCTT-----C----CHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCCC-----C----CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 80898998644-----6----39999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=369.05 Aligned_cols=250 Identities=29% Similarity=0.486 Sum_probs=201.8
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEE
Q ss_conf 39785542142498009999966------984999999134331068999999999830599732337748994982279
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLV------DGQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLL 513 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~l 513 (747)
++|.+.++||+|+||+||+|++. ++..||||+++.......++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEECCCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEE
Q ss_conf 995079999446763128----------9876785678999999999999834159994673266768379858999447
Q 004521 514 IYEFMPNKSLDSFIFDQT----------RRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNPKI 583 (747)
Q Consensus 514 V~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki 583 (747)
||||+++|+|.++|.... ....++|..++.|+.|+|.||.|||+++ |+||||||+||||++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 1256750038998754444021023---------7888844640237899999881-99899998876402244867721
Q 004521 584 SDFGLVRTFGGDETEGNTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVS-GKKNRGFYRSDTKVNLIGHLWDE 653 (747)
Q Consensus 584 ~DfGla~~~~~~~~~~~~~~~~~~~---------~~~~s~~sDVwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 653 (747)
+|||+|+...............++. +..|+.++|||||||+||||+| |+.||.... ..+....+ ..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~---~~~~~~~i-~~ 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS---NNEVIECI-TQ 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC---HHHHHHHH-HH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC---HHHHHHHH-HC
T ss_conf 873001006788741664751347010388987079997036677889999999808999999989---99999999-80
Q ss_pred CCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9865224301106699999999999997616899999999889999854898
Q 004521 654 GIPLRLIDACIQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSEI 705 (747)
Q Consensus 654 ~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~~ 705 (747)
+........ . ...+.+++.+||+.||++||||.+|++.|+...
T Consensus 246 ~~~~~~p~~-----~----~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 246 GRVLQRPRT-----C----PQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp TCCCCCCTT-----C----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCC-----C----HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 898899741-----4----399999999976879668929999999998777
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=366.76 Aligned_cols=250 Identities=28% Similarity=0.451 Sum_probs=197.8
Q ss_pred CCCCCCCEECCCCCEEEEEEEEC------CCCEEEEEEECCC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEE
Q ss_conf 39785542142498009999966------9849999991343-3106899999999983059973233774899498227
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLV------DGQEIAVKRLSKI-SEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKL 512 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~------~g~~vavK~l~~~-~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~ 512 (747)
.++++.++||+|+||+||+|.+. .++.||||+++.. .....++|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 99950799994467631289-------------87678567899999999999983415999467326676837985899
Q 004521 513 LIYEFMPNKSLDSFIFDQTR-------------RTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDM 579 (747)
Q Consensus 513 lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~ 579 (747)
+||||+++|+|.++|..... ...+++..++.|+.|||.||+|||+.+ |+||||||+||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCEEEEC---------CCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHH
Q ss_conf 9447125675003899875444402102---------37888844640237899999881-9989999887640224486
Q 004521 580 NPKISDFGLVRTFGGDETEGNTNRVVGT---------YDGQFSIKSDVFSFGILLLEIVS-GKKNRGFYRSDTKVNLIGH 649 (747)
Q Consensus 580 ~~ki~DfGla~~~~~~~~~~~~~~~~~~---------~~~~~s~~sDVwSlGvil~ellt-g~~p~~~~~~~~~~~~~~~ 649 (747)
.+||+|||+|+...............++ .++.|+.++|||||||+||||+| |+.||.... ..++...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~---~~~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS---NQDVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC---HHHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHH
T ss_conf 7898876020233677740473451257765698998279999630001579999999968999999989---9999999
Q ss_pred HHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 77219865224301106699999999999997616899999999889999854898
Q 004521 650 LWDEGIPLRLIDACIQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSEI 705 (747)
Q Consensus 650 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~~ 705 (747)
+ ..+......+. . ...+.+++.+||+.||.+||+|.+|++.|+...
T Consensus 260 i-~~~~~~~~p~~-----~----~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 260 I-RNRQVLPCPDD-----C----PAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp H-HTTCCCCCCTT-----C----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred H-HCCCCCCCCCC-----C----HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 9-81998999620-----3----699999999975879657929999999998531
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=364.13 Aligned_cols=251 Identities=26% Similarity=0.462 Sum_probs=192.4
Q ss_pred HHCCCCCCCEECCCCCEEEEEEEECCCCEEEEEEECC--CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 7239785542142498009999966984999999134--33106899999999983059973233774899498227999
Q 004521 438 ATDNFSINNKLGEGGFGPVYKGTLVDGQEIAVKRLSK--ISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLLIY 515 (747)
Q Consensus 438 ~~~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~--~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~lV~ 515 (747)
..+++++.++||+|+||+||+|++. ..||||.++. ...+..+.|.+|+.++++++|||||+++|++.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 4799498449820888689999989--968999997268999999999999999985899887469999978-9589999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCC
Q ss_conf 50799994467631289876785678999999999999834159994673266768379858999447125675003899
Q 004521 516 EFMPNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNPKISDFGLVRTFGGD 595 (747)
Q Consensus 516 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DfGla~~~~~~ 595 (747)
||+++|+|.++|... ...+++..++.|+.|+|.||+|||+.+ |+||||||+||||++++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred ECCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 748998788987524--899999999999999999999997799---527855789978889990899441575424667
Q ss_pred CCCCCCCEEEECC------------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 8754444021023------------7888844640237899999881998999988764022448677219865224301
Q 004521 596 ETEGNTNRVVGTY------------DGQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDTKVNLIGHLWDEGIPLRLIDAC 663 (747)
Q Consensus 596 ~~~~~~~~~~~~~------------~~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 663 (747)
..........|+. ...|+.++|||||||+||||+||+.||...... ..+......+....... .
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~---~~~~~~~~~~~~~p~~~-~ 261 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR---DQIIFMVGRGYASPDLS-K 261 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHHHHHTTCCCCCST-T
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHCCCCCCCCC-C
T ss_conf 7640315644687724987861468998786877572899999999788998999969---99999996588888720-0
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 10669999999999999761689999999988999985489
Q 004521 664 IQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSE 704 (747)
Q Consensus 664 l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~ 704 (747)
..... ...+.+++.+||+.||.+||||.+|++.|+.+
T Consensus 262 ~~~~~----~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 262 LYKNC----PKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp SCTTS----CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred CCCCC----HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 35445----69999999997577976890989999999997
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=360.03 Aligned_cols=261 Identities=27% Similarity=0.422 Sum_probs=205.4
Q ss_pred CCHHHHHHHHCCCCCCCEECCCCCEEEEEEEECC------CCEEEEEEECCC-CCCCHHHHHHHHHHHHCCC-CCCEEEE
Q ss_conf 2488899972397855421424980099999669------849999991343-3106899999999983059-9732337
Q 004521 430 FELATIANATDNFSINNKLGEGGFGPVYKGTLVD------GQEIAVKRLSKI-SEQGLKELKNEVILFSKLQ-HRNLVKL 501 (747)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~------g~~vavK~l~~~-~~~~~~~~~~E~~~l~~l~-H~nIv~l 501 (747)
++..+++...++|++.+.||+|+||.||+|.+.. ++.||||.+... .....+.|.+|+.++.++. |||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEECCCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 7489949-822799950799994467631289-------------87678567899999999999983415999467326
Q 004521 502 LGCCIQG-EEKLLIYEFMPNKSLDSFIFDQTR-------------RTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRD 567 (747)
Q Consensus 502 ~g~~~~~-~~~~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~D 567 (747)
+|+|.+. +..++||||+++|+|.++|..... ...+++..++.++.|||.||+|||+.+ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 67683798589994471256750038998754444021023---------7888844640237899999881-9989999
Q 004521 568 LKASNVLLDQDMNPKISDFGLVRTFGGDETEGNTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVS-GKKNRGF 637 (747)
Q Consensus 568 ikp~NIll~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~---------~~~~s~~sDVwSlGvil~ellt-g~~p~~~ 637 (747)
|||+|||+++++.+||+|||+|+.+.............++. +..|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 88764022448677219865224301106699999999999997616899999999889999854898
Q 004521 638 YRSDTKVNLIGHLWDEGIPLRLIDACIQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSEI 705 (747)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~~ 705 (747)
.... ..+......+......+.. ...+.+++.+||+.||.+||||.+|++.|+..+
T Consensus 291 ~~~~---~~~~~~i~~g~~~~~p~~~---------~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 291 VKID---EEFCRRLKEGTRMRAPDYT---------TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CCCS---HHHHHHHHHTCCCCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHCCCCCCCCCCC---------CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 8989---9999999738988888657---------899999999976869667939999999999999
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=349.56 Aligned_cols=241 Identities=21% Similarity=0.333 Sum_probs=192.7
Q ss_pred CCCCCCCEECCCCCEEEEEEEECC-CCEEEEEEECCC--CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 397855421424980099999669-849999991343--31068999999999830599732337748994982279995
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLVD-GQEIAVKRLSKI--SEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLLIYE 516 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~--~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~lV~e 516 (747)
++|++.+.||+|+||+||+|+... ++.||||++... .....+.+.+|+.++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCC
Q ss_conf 07999944676312898767856789999999999998341599946732667683798589994471256750038998
Q 004521 517 FMPNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNPKISDFGLVRTFGGDE 596 (747)
Q Consensus 517 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~ 596 (747)
|+++|+|.+++... +...+++..+..++.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-8999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf 754444021023---------78888446402378999998819989999887640224486772198652243011066
Q 004521 597 TEGNTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDTKVNLIGHLWDEGIPLRLIDACIQDS 667 (747)
Q Consensus 597 ~~~~~~~~~~~~---------~~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 667 (747)
.. .....||. +..|+.++|||||||+||||++|+.||... .....+..+.... ...+.. .
T Consensus 180 ~~--~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~---~~~~~~~~i~~~~-~~~~~~-----~ 248 (350)
T 4b9d_A 180 EL--ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG---SMKNLVLKIISGS-FPPVSL-----H 248 (350)
T ss_dssp HH--HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS---SHHHHHHHHHHTC-CCCCCT-----T
T ss_pred CC--CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC---CHHHHHHHHHCCC-CCCCCC-----C
T ss_conf 41--01457883603999987999895999999999999999787998996---9999999998089-999975-----5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99999999999997616899999999889999
Q 004521 668 CNLADVIRCIHIGLLCVQQHPEDRPCMPSVIL 699 (747)
Q Consensus 668 ~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~ 699 (747)
.+ ..+.+++.+||+.||.+|||+.++++
T Consensus 249 ~s----~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 249 YS----YDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp SC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CC----HHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 79----99999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=347.66 Aligned_cols=241 Identities=24% Similarity=0.374 Sum_probs=193.6
Q ss_pred HCCCCCCCEECCCCCEEEEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEC
Q ss_conf 2397855421424980099999669-849999991343310689999999998305997323377489949822799950
Q 004521 439 TDNFSINNKLGEGGFGPVYKGTLVD-GQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLLIYEF 517 (747)
Q Consensus 439 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~lV~e~ 517 (747)
.+.|++.++||+|+||.||+|+... |+.||||++........+.+.+|+.+++.++|||||++++++...+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCC
Q ss_conf 79999446763128987678567899999999999983415999467326676837985899944712567500389987
Q 004521 518 MPNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNPKISDFGLVRTFGGDET 597 (747)
Q Consensus 518 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~~ 597 (747)
+++|+|.+++.. ..+++..+..++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 230 ~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~ 302 (423)
T 4fie_A 230 LEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 302 (423)
T ss_dssp CTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred CCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC
T ss_conf 899828988761----69899999999999999999999889---04465787778985899989803726547778876
Q ss_pred CCCCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCC
Q ss_conf 54444021023---------788884464023789999988199899998876402244867721986522430110669
Q 004521 598 EGNTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDTKVNLIGHLWDEGIPLRLIDACIQDSC 668 (747)
Q Consensus 598 ~~~~~~~~~~~---------~~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 668 (747)
. .....|+. +..|+.++|||||||++|||++|+.||... .....+..+. ......+... ...
T Consensus 303 ~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~---~~~~~~~~i~-~~~~~~~~~~---~~~ 373 (423)
T 4fie_A 303 R--RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE---PPLKAMKMIR-DNLPPRLKNL---HKV 373 (423)
T ss_dssp C--BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS---CHHHHHHHHH-HSCCCCCSCT---TSS
T ss_pred C--CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC---CHHHHHHHHH-CCCCCCCCCC---CCC
T ss_conf 4--34666474727999977999996899999999999999787998986---9999999997-2799887650---129
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9999999999997616899999999889999
Q 004521 669 NLADVIRCIHIGLLCVQQHPEDRPCMPSVIL 699 (747)
Q Consensus 669 ~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~ 699 (747)
+ ..+.+|+.+||+.||.+|||+.|+++
T Consensus 374 s----~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 374 S----PSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp C----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred C----HHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9----99999999986789568909999960
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=347.00 Aligned_cols=240 Identities=24% Similarity=0.374 Sum_probs=192.6
Q ss_pred CCCCCCCEECCCCCEEEEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEECC
Q ss_conf 397855421424980099999669-8499999913433106899999999983059973233774899498227999507
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLVD-GQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLLIYEFM 518 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~lV~e~~ 518 (747)
+.|++.++||+|+||.||+|+... |+.||||++........+.+.+|+.+++.++|||||++++++.+.+..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99994467631289876785678999999999999834159994673266768379858999447125675003899875
Q 004521 519 PNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDMNPKISDFGLVRTFGGDETE 598 (747)
Q Consensus 519 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~~~ki~DfGla~~~~~~~~~ 598 (747)
++|+|.+++.. ..+++..+..++.|++.||+|||+.+ |+||||||+||||+.++.+||+|||+|+.+......
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 226 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf 99808999871----89899999999999999999999888---355627889978879998899027575366788775
Q ss_pred CCCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCC
Q ss_conf 4444021023---------7888844640237899999881998999988764022448677219865224301106699
Q 004521 599 GNTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDTKVNLIGHLWDEGIPLRLIDACIQDSCN 669 (747)
Q Consensus 599 ~~~~~~~~~~---------~~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 669 (747)
. ....||. +..|+.++||||+||++|||++|+.||... .....+..+ .......+... ...
T Consensus 227 ~--~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~---~~~~~~~~i-~~~~~~~~~~~---~~~- 296 (346)
T 4fih_A 227 R--KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE---PPLKAMKMI-RDNLPPRLKNL---HKV- 296 (346)
T ss_dssp B--CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS---CHHHHHHHH-HHSSCCCCSCG---GGS-
T ss_pred C--CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC---CHHHHHHHH-HCCCCCCCCCC---CCC-
T ss_conf 3--4656275827999977999996899999999999999787998985---999999999-71799988750---229-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 999999999997616899999999889999
Q 004521 670 LADVIRCIHIGLLCVQQHPEDRPCMPSVIL 699 (747)
Q Consensus 670 ~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~ 699 (747)
...+.+++.+||+.||.+|||+.|+++
T Consensus 297 ---s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 297 ---SPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp ---CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---CHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf ---999999999986799568909999960
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=344.25 Aligned_cols=255 Identities=20% Similarity=0.281 Sum_probs=186.5
Q ss_pred CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECC----EEEEEE
Q ss_conf 3978554214249800999996698499999913433106899999999983059973233774899498----227999
Q 004521 440 DNFSINNKLGEGGFGPVYKGTLVDGQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGE----EKLLIY 515 (747)
Q Consensus 440 ~~~~~~~~lg~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~----~~~lV~ 515 (747)
++|.+.++||+|+||+||+|++ .|+.||||++.... .....+..|+..+.+++|||||+++|++.+.+ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-99899999988313-366999999999860899988709999984688723788775
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEECCCCCCCEEECCCCCCEEECCCCCC
Q ss_conf 5079999446763128987678567899999999999983415-----99946732667683798589994471256750
Q 004521 516 EFMPNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQD-----SRLRIIHRDLKASNVLLDQDMNPKISDFGLVR 590 (747)
Q Consensus 516 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~iiH~Dikp~NIll~~~~~~ki~DfGla~ 590 (747)
||+++|+|.+++... .+++..+.+++.|++.||+|||++ ..++|+||||||+||||+.++++||+|||+|+
T Consensus 81 Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred CCCCCCCHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 178999689999757----9998999999999999999999852400478987624678420899889978998479874
Q ss_pred CCCCCCCCC--CCCEEEECC--------C-------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-----------
Q ss_conf 038998754--444021023--------7-------888844640237899999881998999988764-----------
Q 004521 591 TFGGDETEG--NTNRVVGTY--------D-------GQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDT----------- 642 (747)
Q Consensus 591 ~~~~~~~~~--~~~~~~~~~--------~-------~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~----------- 642 (747)
......... ......||. . ..++.++|||||||+||||+||+.|+.......
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 55677773221046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred HHHHHHHH-HHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 02244867-721986522430110669999999999999761689999999988999985489
Q 004521 643 KVNLIGHL-WDEGIPLRLIDACIQDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSE 704 (747)
Q Consensus 643 ~~~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~ 704 (747)
........ ...+....+.+. ....+....+.+++.+||+.||.+||||.+|++.|+.+
T Consensus 237 ~~~~~~~~~~~~~~rp~~p~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 237 SVEEMRKVVCEQKLRPNIPNR----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CHHHHHHHHTTSCCCCCCCGG----GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 099999987502579988765----56658999999999997605975795999999999988
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=342.09 Aligned_cols=253 Identities=23% Similarity=0.281 Sum_probs=194.6
Q ss_pred HCCCCCCCEECCCCCEEEEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEC
Q ss_conf 2397855421424980099999669-849999991343310689999999998305997323377489949822799950
Q 004521 439 TDNFSINNKLGEGGFGPVYKGTLVD-GQEIAVKRLSKISEQGLKELKNEVILFSKLQHRNLVKLLGCCIQGEEKLLIYEF 517 (747)
Q Consensus 439 ~~~~~~~~~lg~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~~E~~~l~~l~H~nIv~l~g~~~~~~~~~lV~e~ 517 (747)
.+.|++.++||+|+||.||+|++.. ++.||||+++.... ..+|+.+++.++|||||++++++.+.+..++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CCEEECCCCCCCCCCCC
Q ss_conf 79999446763128987678567899999999999983415999467326676837985899-94471256750038998
Q 004521 518 MPNKSLDSFIFDQTRRTLLDWSQRFHIICGTARGLLYLHQDSRLRIIHRDLKASNVLLDQDM-NPKISDFGLVRTFGGDE 596 (747)
Q Consensus 518 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH~Dikp~NIll~~~~-~~ki~DfGla~~~~~~~ 596 (747)
+++|+|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 5998699999876---99999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCC---CCCEEEECC---------CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 754---444021023---------78888446402378999998819989999887640224486772198652243011
Q 004521 597 TEG---NTNRVVGTY---------DGQFSIKSDVFSFGILLLEIVSGKKNRGFYRSDTKVNLIGHLWDEGIPLRLIDACI 664 (747)
Q Consensus 597 ~~~---~~~~~~~~~---------~~~~s~~sDVwSlGvil~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 664 (747)
... ......||. +..|+.++|||||||++|||++|+.||...... .+...+..........
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~---~~~~~i~~~~~~~~~~---- 278 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG---PLCLKIASEPPPIREI---- 278 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS---CCHHHHHHSCCGGGGS----
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCCCCCHHC----
T ss_conf 654022178545580200899988999890899999999999999786998998999---9999998089980025----
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC----CCCCCCCCC
Q ss_conf 0669999999999999761689999999988999985489----899999999
Q 004521 665 QDSCNLADVIRCIHIGLLCVQQHPEDRPCMPSVILMLGSE----ILLPQPKQP 713 (747)
Q Consensus 665 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPt~~~v~~~L~~~----~~~~~p~~p 713 (747)
.... ...+.+++.+||+.||.+|||+.|+++.|... ..+..|...
T Consensus 279 ~~~~----s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~ 327 (336)
T 4g3f_A 279 PPSC----APLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKG 327 (336)
T ss_dssp CTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSS
T ss_pred CCCC----CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8667----999999999976289768959999999999997544321698767
Done!