Query 004522
Match_columns 747
No_of_seqs 165 out of 200
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 00:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 3.7E-88 8E-93 746.7 16.0 511 46-746 52-572 (739)
2 KOG1079 Transcriptional repres 95.6 0.022 4.7E-07 66.7 6.4 108 39-181 15-122 (739)
3 PF03638 TCR: Tesmin/TSO1-like 94.5 0.018 3.9E-07 46.0 1.5 35 711-745 2-37 (42)
4 PF00249 Myb_DNA-binding: Myb- 94.5 0.06 1.3E-06 42.5 4.4 46 204-251 1-48 (48)
5 cd00167 SANT 'SWI3, ADA2, N-Co 94.5 0.09 2E-06 38.9 5.1 42 556-599 1-43 (45)
6 smart00717 SANT SANT SWI3, AD 94.4 0.097 2.1E-06 39.1 5.2 43 555-599 2-45 (49)
7 smart00717 SANT SANT SWI3, AD 94.2 0.059 1.3E-06 40.3 3.6 45 205-251 2-47 (49)
8 PF13921 Myb_DNA-bind_6: Myb-l 93.6 0.09 2E-06 42.8 3.8 42 207-251 1-44 (60)
9 cd00167 SANT 'SWI3, ADA2, N-Co 91.6 0.24 5.1E-06 36.6 3.5 43 207-251 2-45 (45)
10 PF00249 Myb_DNA-binding: Myb- 84.0 2.7 5.8E-05 33.2 5.2 43 555-598 2-45 (48)
11 PF11616 EZH2_WD-Binding: WD r 82.4 1.7 3.7E-05 32.8 3.2 27 55-81 1-27 (30)
12 KOG1171 Metallothionein-like p 81.8 0.51 1.1E-05 53.2 0.5 57 687-744 144-250 (406)
13 PF13921 Myb_DNA-bind_6: Myb-l 78.6 5.2 0.00011 32.6 5.2 41 557-599 1-41 (60)
14 TIGR01557 myb_SHAQKYF myb-like 75.9 6.9 0.00015 33.0 5.3 45 555-600 4-53 (57)
15 PF09111 SLIDE: SLIDE; InterP 68.6 4.5 9.8E-05 38.7 3.0 48 204-251 49-110 (118)
16 PF05033 Pre-SET: Pre-SET moti 59.0 6 0.00013 35.5 1.8 36 676-711 46-103 (103)
17 PLN03212 Transcription repress 55.5 12 0.00026 40.2 3.6 46 204-251 25-72 (249)
18 PF03638 TCR: Tesmin/TSO1-like 54.7 8.3 0.00018 31.1 1.7 37 675-712 2-40 (42)
19 PLN03212 Transcription repress 54.6 15 0.00033 39.5 4.1 47 204-253 78-125 (249)
20 KOG4442 Clathrin coat binding 47.7 9.7 0.00021 45.8 1.6 37 683-719 82-121 (729)
21 PF14774 FAM177: FAM177 family 40.7 48 0.001 32.3 4.8 67 174-242 18-98 (123)
22 PLN03091 hypothetical protein; 39.4 33 0.00071 39.7 4.0 45 204-251 67-112 (459)
23 smart00570 AWS associated with 38.8 11 0.00025 31.4 0.3 30 683-712 16-46 (51)
24 TIGR02726 phenyl_P_delta pheny 35.9 47 0.001 33.2 4.1 48 178-225 22-74 (169)
25 KOG1082 Histone H3 (Lys9) meth 35.1 30 0.00064 38.4 2.8 42 672-713 103-170 (364)
26 PF08396 Toxin_34: Spider toxi 32.0 31 0.00067 31.1 1.8 48 684-743 7-68 (75)
27 PF13404 HTH_AsnC-type: AsnC-t 30.2 64 0.0014 25.5 3.2 40 210-251 3-42 (42)
28 PLN03091 hypothetical protein; 30.1 41 0.00088 39.0 2.9 46 204-251 14-61 (459)
29 PF06937 EURL: EURL protein; 27.6 25 0.00054 38.3 0.7 30 144-173 130-167 (285)
30 KOG4786 Ubinuclein, nuclear pr 27.4 35 0.00076 41.7 1.8 52 190-251 493-550 (1136)
31 KOG4167 Predicted DNA-binding 26.7 88 0.0019 38.5 4.9 43 554-598 619-661 (907)
32 PRK09430 djlA Dna-J like membr 24.4 86 0.0019 33.7 3.9 51 207-257 146-231 (267)
33 COG5259 RSC8 RSC chromatin rem 24.1 64 0.0014 37.8 3.0 43 554-598 279-322 (531)
34 KOG4289 Cadherin EGF LAG seven 22.5 63 0.0014 42.5 2.8 25 676-700 1721-1754(2531)
35 KOG1194 Predicted DNA-binding 20.1 1.3E+02 0.0027 35.4 4.3 53 542-600 361-413 (534)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=3.7e-88 Score=746.75 Aligned_cols=511 Identities=32% Similarity=0.447 Sum_probs=375.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccCCCCchhhhHHhhhccccccccCCCCCCCCCccccccCc
Q 004522 46 VAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGY 125 (747)
Q Consensus 46 i~~eR~~~IK~k~e~Nr~kL~~~ts~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~~~~d~~~~~d~~~ 125 (747)
|+..++.+++++...+|.+...+|+.+- +...+.... .-+.+.++..++.-|++++||+..+..+.+...+-++
T Consensus 52 ~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~---~~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~-- 125 (739)
T KOG1079|consen 52 RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPIN---ELNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD-- 125 (739)
T ss_pred hhcccccccccccccccccccccccccc-Ccccccchh---hhcccccccccccCChhhhcceecccceecccccccc--
Confidence 7777777777777777777777887774 555544432 2234678888888899999998666555444432221
Q ss_pred cccccccCCCCCccccccccccCCCCCCCccceeeccccccccccccccccceeeecCCCCeeeecCCchhhchhhhhhc
Q 004522 126 ASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKK 205 (747)
Q Consensus 126 ~~~~v~~ss~~~k~~v~~ikLp~veklPpyttWifLdrNqRMaEDqSVvGRRrIYYDq~ggEaLIcSDsEEE~~eeeeK~ 205 (747)
. |..|++|.+|.|++|++|||+||||||++||+|||+|+||| |.|||++| ||+|||.+.+|||+
T Consensus 126 ---~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ekr 189 (739)
T KOG1079|consen 126 ---E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEKR 189 (739)
T ss_pred ---c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhcc
Confidence 1 24599999999999999999999999999999999999999 99999999 99999966699999
Q ss_pred ccccchhh-HHHHHHhhcCCcHHHHHHHHhhcC--CChHHHHHHHHHhhcccccC----CCCCCCCCCcccccchhhh-H
Q 004522 206 DFVDSEDY-ILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILSKEESAV----GGSNNGNDEHTMNNFLVKD-L 277 (747)
Q Consensus 206 ~f~e~eD~-~l~m~~~e~glsd~Vl~~l~~~~~--~~~seI~eRy~~L~~~~~~~----~~~~~~~~~~~~~~~ldK~-l 277 (747)
+|.|++|. ++|++.+.+|+.+.||++|+++|. ++.++|+|||.+|+...... ++.++ ..++.|++. +
T Consensus 190 ~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~~~~~-----id~~~ae~~~r 264 (739)
T KOG1079|consen 190 DFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPECTPN-----IDGSSAEPVQR 264 (739)
T ss_pred cccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcccccC-----CCccccChHHH
Confidence 99999999 899999999999999999999999 99999999999998554443 23332 224556666 9
Q ss_pred HHHhhhcccccccccccccccCcCCCCCccccCCCCCCCCCCCCCCCCCcccchhcccccccccccCCCCCCCccccccc
Q 004522 278 EAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFIS 357 (747)
Q Consensus 278 ~~aLdSFdnlFCRRCliFDCrlHgcSQ~LI~p~ekq~~~~e~~~d~~PCg~~Cyl~~~~~~~~~~~~~~~~~~~e~~~~~ 357 (747)
+++|||||||||||||+|||+||| +|.++||.++.-.|.++....+|||+.||.++.+......
T Consensus 265 ~~~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m--------------- 328 (739)
T KOG1079|consen 265 EQALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM--------------- 328 (739)
T ss_pred HhhhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh---------------
Confidence 999999999999999999999999 9999999999999999999999999999999865432100
Q ss_pred CCCCCCCccCCcccCCCCcccccccccccccccccccCCCCccccccCCCCCccccCCCCccccccccccccccchhHHH
Q 004522 358 SSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAE 437 (747)
Q Consensus 358 ~~~~~~~~~~~~k~~~~~~~~~k~~~~es~ss~~~~~Sessds~~~~~~~~~~~~~~s~~~~~~~~~~g~~k~~~~~~~e 437 (747)
+.+. .+.++..|.
T Consensus 329 -~~~~--------------------------------------------------------~~~~p~~g~---------- 341 (739)
T KOG1079|consen 329 -SAVV--------------------------------------------------------SKCPPIRGD---------- 341 (739)
T ss_pred -hccc--------------------------------------------------------ccCCCCcch----------
Confidence 0000 000000000
Q ss_pred HHHHHHHhhhhhhhccccccccCCCCCCccccccccccccccccCCCcccccCCCCCcccccchhhhhccccccccccCC
Q 004522 438 RALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPL 517 (747)
Q Consensus 438 ~~~~~~~k~qkk~~~~d~ds~~~~~~~~~d~~l~s~~~~~~~~~~~~s~~~~~~~~~~~s~~k~~~~~~s~n~~~~~~~~ 517 (747)
+|||--.++..+| | +.+...++.+..+.....++.-... |.+.. .+
T Consensus 342 -------~~qk~~~~~~~~s---------~-----~~~~~~e~~g~~~d~~v~~~~~~~~-----------~~v~~--~~ 387 (739)
T KOG1079|consen 342 -------IRQKLVKASSMDS---------D-----DEHVEEEDKGHDDDDGVPRGFGGSV-----------NFVGE--DD 387 (739)
T ss_pred -------hhhhhcccccCCc---------c-----hhhccccccCccccccccccccccc-----------ccccC--Cc
Confidence 1222111111111 0 1122333333333333322210000 00000 00
Q ss_pred CCcccccCCCCCCCCCCccchhhhhhhhhhccccCCCCCcchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHHHHHHH
Q 004522 518 GSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYM 597 (747)
Q Consensus 518 ~~~~~~~~~~~~~~~~d~~r~~e~v~~~~~~~e~~~~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym 597 (747)
++.. .++.+.. .+....+-....+|+++|+.||++|+.+||.|+|+|||+| ++|||++||+||
T Consensus 388 ~~~~-----------s~~~~~c----~~~~~~~~~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l--~~ktC~~v~~~~ 450 (739)
T KOG1079|consen 388 TSTH-----------SSTNSIC----QNPVHGKKDTNVEWNGAEKVLFRVGSTLYGTNRCSIARNL--LTKTCRQVYEYE 450 (739)
T ss_pred cccc-----------ccccccc----cCcccccCCcccccchhhhHHHHhccccccchhhHHHHHh--cchHHHHHHHHh
Confidence 0000 0000000 0000000012568999999999999999999999999998 569999999999
Q ss_pred HhhhhccccccCcchhhhcccCCccCCCCCCCCcccccchhhHhhhccccccccccccccchhhHHhhhccCCCCCCCCC
Q 004522 598 TCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYN 677 (747)
Q Consensus 598 ~~~~~~l~~~~~~~~~si~~~~~k~d~~~~~~~~~~~~rsr~~rRr~r~RkLky~wksag~h~~~kRi~~gKd~~~~~y~ 677 (747)
+.+........+. ......+++|.+.+|+.++.|++++.|+++.|+.+| .|+
T Consensus 451 ~~e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~------------~~q 502 (739)
T KOG1079|consen 451 QKEVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVW------------NYQ 502 (739)
T ss_pred hcchhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceee------------ecC
Confidence 9876543333221 123456677899999999999999999999887654 388
Q ss_pred CCCCCCCC--CCCCcccccCceeccccCCCcccCCCCCCcccCCCCcCCCCccccccCCcCCccccCcCCC
Q 004522 678 PCGCQTAC--GKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWI 746 (747)
Q Consensus 678 PC~h~gpC--~~~C~C~~~g~~CEk~C~C~~~C~nRF~GC~C~k~qC~t~~CpC~~a~RECDPdlC~~Cgv 746 (747)
||+|+|+| +.+|+|+.+++||||||+|+++|.||||||+| ++||+|+|||||+|+||||||+|..||+
T Consensus 503 pC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~ 572 (739)
T KOG1079|consen 503 PCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN 572 (739)
T ss_pred cccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc
Confidence 99998766 68999999999999999999999999999999 8999999999999999999999999995
No 2
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.57 E-value=0.022 Score=66.73 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcccccccCCCCchhhhHHhhhccccccccCCCCCCCCCc
Q 004522 39 IDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSH 118 (747)
Q Consensus 39 i~qLKkqi~~eR~~~IK~k~e~Nr~kL~~~ts~l~~~~~~r~~~~~~~~~~~~~~Ls~R~~~pl~~~~g~~~~~~~~d~~ 118 (747)
++|+|| ..+.+.+|.+.-.|+.....-+..++..++.|. ..|+...--.+-....++..
T Consensus 15 ~rq~~r---~~~~~~~K~~~~~~~~~~~e~i~~~~~E~k~~~------------------~~~~~~~~~~~~~~r~k~~~ 73 (739)
T KOG1079|consen 15 SRQRKR---VREADEGKSAKSKNPADRLEKIKILNCEWKKRR------------------LKPVRSAKEVDGDIRVKVDL 73 (739)
T ss_pred HHHHHH---HHHHhhhhhhcccCHHHHHHHHHHHHHHHhhhh------------------cccccccccccccccccccc
Confidence 788888 777788888888898888888888877666533 22322221111111111111
Q ss_pred cccccCccccccccCCCCCccccccccccCCCCCCCccceeeccccccccccccccccceeee
Q 004522 119 ISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYY 181 (747)
Q Consensus 119 ~~~d~~~~~~~v~~ss~~~k~~v~~ikLp~veklPpyttWifLdrNqRMaEDqSVvGRRrIYY 181 (747)
+ +.+|. . +-+.++.-.+..|..+|.+++|.+++.|+ |++|.+|+. +|+|
T Consensus 74 ------~--~~~~~-~--~~~~~~i~~~n~~~~v~~~~~~~~~q~nf-mv~~~~~~~--~ip~ 122 (739)
T KOG1079|consen 74 ------D--TSIFD-F--PSQKSPINELNAVAQVPIMYSWPPLQQNF-MVEDETVLH--NIPY 122 (739)
T ss_pred ------c--ccccc-C--cccccchhhhcccccccccccCChhhhcc-eecccceec--cccc
Confidence 1 01121 1 12233556788999999999999999999 999999999 9999
No 3
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=94.55 E-value=0.018 Score=45.95 Aligned_cols=35 Identities=46% Similarity=1.159 Sum_probs=30.7
Q ss_pred CCCCcccCCCCcCCCCccccccCCcCCcc-ccCcCC
Q 004522 711 RFRGCHCAKSQCRSRQCPCFAADRECDPD-VCRNCW 745 (747)
Q Consensus 711 RF~GC~C~k~qC~t~~CpC~~a~RECDPd-lC~~Cg 745 (747)
...||+|.++.|...-|.||++++.|.+. .|.+|.
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~ 37 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCK 37 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCC
Confidence 46899999999999999999999999994 566663
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.53 E-value=0.06 Score=42.47 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=38.8
Q ss_pred hcccccchhhHHHHHHhhcCCcHHHHHHHHhhcC--CChHHHHHHHHHhh
Q 004522 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILS 251 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~--~~~seI~eRy~~L~ 251 (747)
|..|++.||.+|-.++++||.. -...|++.|+ +++.+++.||..|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998 6778888887 99999999999874
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=94.50 E-value=0.09 Score=38.86 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=37.7
Q ss_pred CcchhhhHHHHHHHHhhC-CCchHHHHhhhCCCCcHHHHHHHHHh
Q 004522 556 SWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 556 ~Wt~~E~sL~~kl~eifG-~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
.||..|..+|..++..|| .+...||+.| +.||-.+|-+|...
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHHH
Confidence 599999999999999999 8999999987 67999999887653
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.44 E-value=0.097 Score=39.14 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=38.9
Q ss_pred CCcchhhhHHHHHHHHhhC-CCchHHHHhhhCCCCcHHHHHHHHHh
Q 004522 555 KSWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 555 ~~Wt~~E~sL~~kl~eifG-~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
..||+.|..+|..++..|| .+...||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4699999999999999999 9999999987 68999999887664
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.20 E-value=0.059 Score=40.34 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.0
Q ss_pred cccccchhhHHHHHHhhcCCcHHHHHHHHhhcC-CChHHHHHHHHHhh
Q 004522 205 KDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (747)
Q Consensus 205 ~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~ 251 (747)
..|++.||.+|-.++.+||.. -+..|+.+|+ +++.+|+.||..|.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 568899999999999999953 2778888888 99999999999876
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=93.58 E-value=0.09 Score=42.80 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.3
Q ss_pred cccchhhHHHHHHhhcCCcHHHHHHHHhhcC-CChHHHHHHHHH-hh
Q 004522 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEI-LS 251 (747)
Q Consensus 207 f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~-L~ 251 (747)
|++.||.+|....++||.+ ...||++|+ +++.+|+.||.. |.
T Consensus 1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND---WKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCcC---HHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 5667999999999999963 788999999 999999999999 75
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=91.58 E-value=0.24 Score=36.62 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHhhcCCcHHHHHHHHhhcC-CChHHHHHHHHHhh
Q 004522 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (747)
Q Consensus 207 f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~ 251 (747)
|++.||.+|-.++.+||.. -...|+++|+ ++..+|+.||..+.
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 7778999999999999952 3778888888 99999999998763
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=84.01 E-value=2.7 Score=33.17 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.4
Q ss_pred CCcchhhhHHHHHHHHhhCCC-chHHHHhhhCCCCcHHHHHHHHH
Q 004522 555 KSWKTIEKGLFDKGVEIFGRN-SCLIARNLLNGLKTCWEVFQYMT 598 (747)
Q Consensus 555 ~~Wt~~E~sL~~kl~eifG~N-sClIArnLl~g~KTC~EV~~ym~ 598 (747)
..||+.|..+|..++..||.+ .=.||..| .+++|=.|+-.+.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRM-PGGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHH-SSSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 369999999999999999998 99999987 34898888776654
No 11
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=82.45 E-value=1.7 Score=32.79 Aligned_cols=27 Identities=26% Similarity=0.123 Sum_probs=21.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhcc
Q 004522 55 QRRVEKNRQKLIGVTNHLYRLSLERRN 81 (747)
Q Consensus 55 K~k~e~Nr~kL~~~ts~l~~~~~~r~~ 81 (747)
|.+|..||+|++..|..|...|+.|+.
T Consensus 1 Kalf~sNr~Ki~e~t~iLN~eWk~lRi 27 (30)
T PF11616_consen 1 KALFSSNRQKIQERTDILNEEWKKLRI 27 (30)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CchhHhhHHHHHHHHHHHHHHHHHhcc
Confidence 568999999999999999999988653
No 12
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=81.82 E-value=0.51 Score=53.23 Aligned_cols=57 Identities=35% Similarity=1.028 Sum_probs=49.1
Q ss_pred CCCcccccCceeccccCCCcccCCC-------------------------------------------------CCCccc
Q 004522 687 KQCPCLLNGTCCEKYCGCPKSCKNR-------------------------------------------------FRGCHC 717 (747)
Q Consensus 687 ~~C~C~~~g~~CEk~C~C~~~C~nR-------------------------------------------------F~GC~C 717 (747)
..|-|+..|+||-.+|.|-. |.|. -.||+|
T Consensus 144 lYCeCFAsG~yC~~~CnCvn-C~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~~~sa~hkkGC~C 222 (406)
T KOG1171|consen 144 LYCECFASGVYCTGPCNCVN-CFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKTPASARHKKGCNC 222 (406)
T ss_pred HhHHHHhhcccccCCcceee-ccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhccchhhhhcCCCCC
Confidence 58999999999999999985 8765 369999
Q ss_pred CCCCcCCCCccccccCCcCCcc-ccCcC
Q 004522 718 AKSQCRSRQCPCFAADRECDPD-VCRNC 744 (747)
Q Consensus 718 ~k~qC~t~~CpC~~a~RECDPd-lC~~C 744 (747)
++..|-.+-|-||.|+-=|--. .|..|
T Consensus 223 kkSgClKkYCECyQa~vlCS~nCkC~~C 250 (406)
T KOG1171|consen 223 KKSGCLKKYCECYQAGVLCSSNCKCQGC 250 (406)
T ss_pred ccccchHHHHHHHhcCCCccccccCcCC
Confidence 9999999999999999999744 35555
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=78.61 E-value=5.2 Score=32.55 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=33.0
Q ss_pred cchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHHHHHHHHh
Q 004522 557 WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 557 Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
||..|..++..++..||.+-..||..| +.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999986 66887788765554
No 14
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=75.91 E-value=6.9 Score=33.01 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=37.7
Q ss_pred CCcchhhhHHHHHHHHhhCC-Cc---hHHHHhhhCCCC-cHHHHHHHHHhh
Q 004522 555 KSWKTIEKGLFDKGVEIFGR-NS---CLIARNLLNGLK-TCWEVFQYMTCS 600 (747)
Q Consensus 555 ~~Wt~~E~sL~~kl~eifG~-Ns---ClIArnLl~g~K-TC~EV~~ym~~~ 600 (747)
-.||+.|-.+|..+++.||. +. =.|+.++ ..++ |-.+|-.++++.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 46999999999999999998 76 7888875 3456 899999988864
No 15
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=68.61 E-value=4.5 Score=38.69 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=34.0
Q ss_pred hcccccchhhHHHHHHhhcCCc-----HHHHHHHHh---------hcCCChHHHHHHHHHhh
Q 004522 204 KKDFVDSEDYILRMTIKEVGLS-----DATLESLAQ---------CFSRSPSEVKARYEILS 251 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~gls-----d~Vl~~l~~---------~~~~~~seI~eRy~~L~ 251 (747)
++.|++.||++|=+.+-+||+. |.|...|.. +-++|+.||+.|...|-
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 4668888999999999999993 234443332 23499999999999986
No 16
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=59.01 E-value=6 Score=35.52 Aligned_cols=36 Identities=39% Similarity=1.101 Sum_probs=20.8
Q ss_pred CCCCCCCCCC--CCCCcccccCc--------------------eeccccCCCcccCCC
Q 004522 676 YNPCGCQTAC--GKQCPCLLNGT--------------------CCEKYCGCPKSCKNR 711 (747)
Q Consensus 676 y~PC~h~gpC--~~~C~C~~~g~--------------------~CEk~C~C~~~C~nR 711 (747)
..-|++.+.| ...|.|..... -|...|.|+.+|.||
T Consensus 46 ~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 46 LQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp TS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred CccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 4578888888 47898877652 377888888888887
No 17
>PLN03212 Transcription repressor MYB5; Provisional
Probab=55.52 E-value=12 Score=40.19 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=38.0
Q ss_pred hcccccchhhHHHHHHhhcCCcHHHHHHHHhhc--CCChHHHHHHHHHhh
Q 004522 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCF--SRSPSEVKARYEILS 251 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~--~~~~seI~eRy~~L~ 251 (747)
|..|+..||.+|..++++||... ...||+.+ +++.-+..+||.+.-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGR--WRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCccc--HHHHHHhhhcCCCcchHHHHHHHhh
Confidence 56799999999999999999653 45677766 599999999997655
No 18
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=54.72 E-value=8.3 Score=31.12 Aligned_cols=37 Identities=32% Similarity=0.923 Sum_probs=29.5
Q ss_pred CCCCCCCC-CCCC-CCCcccccCceeccccCCCcccCCCC
Q 004522 675 QYNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF 712 (747)
Q Consensus 675 ~y~PC~h~-gpC~-~~C~C~~~g~~CEk~C~C~~~C~nRF 712 (747)
+..+|.+. ..|. ..|.|+..+.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 34577774 6776 6899999999999999995 588764
No 19
>PLN03212 Transcription repressor MYB5; Provisional
Probab=54.59 E-value=15 Score=39.47 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=37.9
Q ss_pred hcccccchhhHHHHHHhhcCCcHHHHHHHHhhcC-CChHHHHHHHHHhhcc
Q 004522 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILSKE 253 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~~~ 253 (747)
|..|++.||.+|-...++||-. -..||++|+ ++.-+|+.||+.+.+.
T Consensus 78 kgpWT~EED~lLlel~~~~GnK---Ws~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred cCCCChHHHHHHHHHHHhcccc---HHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 5679999999999999999953 566777776 8888899999876643
No 20
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.67 E-value=9.7 Score=45.83 Aligned_cols=37 Identities=38% Similarity=0.783 Sum_probs=32.2
Q ss_pred CCCCCCCcccccCceecc-ccC-CCcccCC-CCCCcccCC
Q 004522 683 TACGKQCPCLLNGTCCEK-YCG-CPKSCKN-RFRGCHCAK 719 (747)
Q Consensus 683 gpC~~~C~C~~~g~~CEk-~C~-C~~~C~n-RF~GC~C~k 719 (747)
..||.+|-|...++.|.- .|. |...|+| ||+-|.|++
T Consensus 82 ~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~ 121 (729)
T KOG4442|consen 82 CACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAK 121 (729)
T ss_pred cccCccccchhhhcccCCccCCCccccccchhhhhhccCc
Confidence 357899999999999999 999 9999985 998888764
No 21
>PF14774 FAM177: FAM177 family
Probab=40.66 E-value=48 Score=32.27 Aligned_cols=67 Identities=30% Similarity=0.396 Sum_probs=36.4
Q ss_pred cccceeeecCCCCeeee-cCCchhhchhhhhhcc----cccchh--h-------HHHHHHhhcCCcHHHHHHHHhhcCCC
Q 004522 174 MSRRRIYYDQNGGEALI-CSDSEEEVIEEEEKKD----FVDSED--Y-------ILRMTIKEVGLSDATLESLAQCFSRS 239 (747)
Q Consensus 174 vGRRrIYYDq~ggEaLI-cSDsEEE~~eeeeK~~----f~e~eD--~-------~l~m~~~e~glsd~Vl~~l~~~~~~~ 239 (747)
.=||.||+ .-||+|- .|.+|||...+..+.+ ..+..+ + ++|+...-+.--|=|=+.||.|||.+
T Consensus 18 ~prRiihF--sdGetmEE~StdeEe~e~d~~~~d~~~~~~dp~~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~fGit 95 (123)
T PF14774_consen 18 KPRRIIHF--SDGETMEEYSTDEEEEEQDEDQPDKLSVQVDPSKLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFFGIT 95 (123)
T ss_pred CchheeEe--cCCceeeeeccccccccccccccccccccCCcccCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHhCCC
Confidence 35788888 7788775 5555554111222222 122222 1 22333444344445667899999988
Q ss_pred hHH
Q 004522 240 PSE 242 (747)
Q Consensus 240 ~se 242 (747)
.+-
T Consensus 96 ~~K 98 (123)
T PF14774_consen 96 SPK 98 (123)
T ss_pred chH
Confidence 764
No 22
>PLN03091 hypothetical protein; Provisional
Probab=39.35 E-value=33 Score=39.75 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=37.0
Q ss_pred hcccccchhhHHHHHHhhcCCcHHHHHHHHhhcC-CChHHHHHHHHHhh
Q 004522 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~ 251 (747)
|..|+..||.+|....++||-. -..||++|+ |+.-+|+.||..+-
T Consensus 67 KgpWT~EED~lLLeL~k~~GnK---WskIAk~LPGRTDnqIKNRWnslL 112 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCL 112 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcc---hHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5679999999999999999953 556777665 89999999998765
No 23
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=38.80 E-value=11 Score=31.43 Aligned_cols=30 Identities=37% Similarity=0.794 Sum_probs=25.3
Q ss_pred CCCCCCCcccccCceeccccCCCcccCC-CC
Q 004522 683 TACGKQCPCLLNGTCCEKYCGCPKSCKN-RF 712 (747)
Q Consensus 683 gpC~~~C~C~~~g~~CEk~C~C~~~C~n-RF 712 (747)
.+|+.+|.....-+-|..+|.|...|.| ||
T Consensus 16 ~~CgsdClNR~l~~EC~~~C~~G~~C~NqrF 46 (51)
T smart00570 16 GACGSDCLNRMLLIECSSDCPCGSYCSNQRF 46 (51)
T ss_pred CCcchHHHHHHHhhhcCCCCCCCcCccCccc
Confidence 4788888888888889999999999986 45
No 24
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=35.88 E-value=47 Score=33.18 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=35.3
Q ss_pred eeeecCCCCeeeecCCchhhchh--hhhh---cccccchhhHHHHHHhhcCCc
Q 004522 178 RIYYDQNGGEALICSDSEEEVIE--EEEK---KDFVDSEDYILRMTIKEVGLS 225 (747)
Q Consensus 178 rIYYDq~ggEaLIcSDsEEE~~e--eeeK---~~f~e~eD~~l~m~~~e~gls 225 (747)
+||||+.|+|....+-.+...+. .+.. .-.+......+++.++.+|+.
T Consensus 22 ~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 22 RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 89999999999888887777666 2211 123445677888888888886
No 25
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=35.13 E-value=30 Score=38.40 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCC----CCcccc----------------------cCceeccccCCCcccCCCCC
Q 004522 672 PCRQYNPCGCQTACGK----QCPCLL----------------------NGTCCEKYCGCPKSCKNRFR 713 (747)
Q Consensus 672 ~~~~y~PC~h~gpC~~----~C~C~~----------------------~g~~CEk~C~C~~~C~nRF~ 713 (747)
.+..-+.|.|...|.. .|.|.. ...-|...|+|..+|.||+.
T Consensus 103 ~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~ 170 (364)
T KOG1082|consen 103 DCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVV 170 (364)
T ss_pred cCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhh
Confidence 3455666777655542 277776 12347778888888888874
No 26
>PF08396 Toxin_34: Spider toxin omega agatoxin/Tx1 family; InterPro: IPR013605 The Tx1 family lethal spider neurotoxin induces excitatory symptoms in mice [].
Probab=31.98 E-value=31 Score=31.13 Aligned_cols=48 Identities=31% Similarity=0.894 Sum_probs=28.3
Q ss_pred CCC---CCCcccccCceeccccCCCcccCCCCC---CcccCCC-------CcCC-CCccccccCCcCCccccCc
Q 004522 684 ACG---KQCPCLLNGTCCEKYCGCPKSCKNRFR---GCHCAKS-------QCRS-RQCPCFAADRECDPDVCRN 743 (747)
Q Consensus 684 pC~---~~C~C~~~g~~CEk~C~C~~~C~nRF~---GC~C~k~-------qC~t-~~CpC~~a~RECDPdlC~~ 743 (747)
.|+ .+|.|.....+| . |...|. ||.|..+ .|.. .+||=..+ +|++|..
T Consensus 7 ~CdG~k~dCqCc~~n~~C----s----C~~~fg~k~~C~C~vG~~~~~~~~C~kK~~C~Nr~~----~~~~C~~ 68 (75)
T PF08396_consen 7 DCDGDKSDCQCCRDNGYC----S----CPFIFGYKWGCKCKVGTSWTFYGICIKKRSCPNRYQ----PPKKCKK 68 (75)
T ss_pred ccCCCcccccccCCCcEe----c----CchhcccccCceEEecCchhhhhHHhhhccCCCCCC----CcccccC
Confidence 565 488887765554 4 444344 7999763 3553 45542222 7888763
No 27
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=30.21 E-value=64 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=29.7
Q ss_pred chhhHHHHHHhhcCCcHHHHHHHHhhcCCChHHHHHHHHHhh
Q 004522 210 SEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILS 251 (747)
Q Consensus 210 ~eD~~l~m~~~e~glsd~Vl~~l~~~~~~~~seI~eRy~~L~ 251 (747)
.-|+-|-..+|+- ...=+..|++-+|.+++.+.+|.+.|+
T Consensus 3 ~~D~~Il~~Lq~d--~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 3 ELDRKILRLLQED--GRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHHH---TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 3567777777775 345678999999999999999999874
No 28
>PLN03091 hypothetical protein; Provisional
Probab=30.08 E-value=41 Score=39.04 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=37.3
Q ss_pred hcccccchhhHHHHHHhhcCCcHHHHHHHHhhc--CCChHHHHHHHHHhh
Q 004522 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCF--SRSPSEVKARYEILS 251 (747)
Q Consensus 204 K~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~--~~~~seI~eRy~~L~ 251 (747)
|..|+..||.+|..++++||... -..|++.+ +++.-+..+||.+.-
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~n--Ws~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGC--WSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCC--HHHHhhhhccCcCcchHhHHHHhcc
Confidence 56799999999999999999743 45666665 599999999997644
No 29
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.57 E-value=25 Score=38.34 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.5
Q ss_pred ccccCCC-CCCCcc-ceeec------cccccccccccc
Q 004522 144 IKLNDNK-RLPPYT-TWIFL------DRNQRMTEDQSV 173 (747)
Q Consensus 144 ikLp~ve-klPpyt-tWifL------drNqRMaEDqSV 173 (747)
.-||... .+|.|+ .|+-. ++.|||.|+...
T Consensus 130 KllpQ~dsqvP~Ys~~w~~~~~~~~s~~~q~~LE~~~~ 167 (285)
T PF06937_consen 130 KLLPQFDSQVPRYSAKWIDGSAGGLSNCTQRILEQREA 167 (285)
T ss_pred ccCcccccCCCccchhhhcccccCCCcchhHHhccccc
Confidence 5688888 999999 89955 578999998654
No 30
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=27.36 E-value=35 Score=41.67 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=36.1
Q ss_pred ecCCchhhchhhhhhcccccchhhHHHHHHhhcCCcHHHHHHHHhhcCCChH------HHHHHHHHhh
Q 004522 190 ICSDSEEEVIEEEEKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPS------EVKARYEILS 251 (747)
Q Consensus 190 IcSDsEEE~~eeeeK~~f~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~~~~s------eI~eRy~~L~ 251 (747)
||+|.+|| |+| -|+.+--..+.+-|+|||+++|.+.++..-+ -|++-|-++.
T Consensus 493 i~~D~~Ee----E~K------~~R~~~~p~KKFQW~DEI~ElL~~gVK~~LES~D~~~~~~~~~~E~C 550 (1136)
T KOG4786|consen 493 IAADAIEE----ENK------KDRLPGDPVKKFQWTDEILELLVSGVKALLESTDGKITIIQFYIEIC 550 (1136)
T ss_pred ccchhhHH----hhh------cCCCCCCchheeeccHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 58887775 554 3566666788899999999999888874433 1555554444
No 31
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=26.74 E-value=88 Score=38.53 Aligned_cols=43 Identities=19% Similarity=0.469 Sum_probs=35.7
Q ss_pred CCCcchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHHHHHHHH
Q 004522 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMT 598 (747)
Q Consensus 554 ~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~ 598 (747)
..-||+.|+-||.+.+..|-+++=+|+..| -+||=.|--+|.+
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEYYY 661 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHHHH
Confidence 456999999999999999999999999987 6788665544433
No 32
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=24.38 E-value=86 Score=33.68 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=36.0
Q ss_pred cccchhhHHHHHHhhcCCcHHHHHHHHhh-------------------------------cC----CChHHHHHHHHHhh
Q 004522 207 FVDSEDYILRMTIKEVGLSDATLESLAQC-------------------------------FS----RSPSEVKARYEILS 251 (747)
Q Consensus 207 f~e~eD~~l~m~~~e~glsd~Vl~~l~~~-------------------------------~~----~~~seI~eRy~~L~ 251 (747)
+.+.|+.+|+.+.+-.|++..-|+.+..+ |+ .+.+||+..|+.|-
T Consensus 146 l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~ 225 (267)
T PRK09430 146 LHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLM 225 (267)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 56667888888888888888766644332 22 45678999999998
Q ss_pred cccccC
Q 004522 252 KEESAV 257 (747)
Q Consensus 252 ~~~~~~ 257 (747)
.+-+++
T Consensus 226 ~~~HPD 231 (267)
T PRK09430 226 SEHHPD 231 (267)
T ss_pred HHhCcC
Confidence 554444
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=24.08 E-value=64 Score=37.79 Aligned_cols=43 Identities=28% Similarity=0.567 Sum_probs=35.2
Q ss_pred CCCcchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHH-HHHHHH
Q 004522 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWE-VFQYMT 598 (747)
Q Consensus 554 ~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~E-V~~ym~ 598 (747)
..+|+.-|.-|++.|+++||+.-=-||+.. |+||=-| ++.|++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~EqCIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQCILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHHHHHHHHc
Confidence 568999999999999999999999999975 8998433 234443
No 34
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=22.50 E-value=63 Score=42.53 Aligned_cols=25 Identities=40% Similarity=0.946 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCC-------CCcccc--cCceecc
Q 004522 676 YNPCGCQTACGK-------QCPCLL--NGTCCEK 700 (747)
Q Consensus 676 y~PC~h~gpC~~-------~C~C~~--~g~~CEk 700 (747)
..||.++|.|.. .|-|.- .|.+||.
T Consensus 1721 lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~ 1754 (2531)
T KOG4289|consen 1721 LNPCENQGTCVRSPGAHGYTCECPPGYTGPYCEL 1754 (2531)
T ss_pred ccccccCceeecCCCCCceeEECCCcccCcchhh
Confidence 568888888862 465644 3445543
No 35
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=20.05 E-value=1.3e+02 Score=35.42 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhhhhhccccCCCCCcchhhhHHHHHHHHhhCCCchHHHHhhhCCCCcHHHHHHHHHhh
Q 004522 542 VAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS 600 (747)
Q Consensus 542 v~~~~~~~e~~~~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~~ 600 (747)
+.+++|+ -+ .-|+..+..+....+..||+.+=.|+--+ +.++|+||-.|+.++
T Consensus 361 ipes~c~---~n-~~~~T~~~la~v~~I~~~~~~~~pl~wri--k~t~cmee~e~l~~~ 413 (534)
T KOG1194|consen 361 IPESTCR---MN-RCFDTPAALALIDNIKRKHHMCVPLVWRV--KQTKCMEENEILNEE 413 (534)
T ss_pred CCchhhh---hc-cccCcHHHHHHHHHHHHhccCcchhhhHh--cCcchhhHHHHHHHH
Done!