Query 004522
Match_columns 747
No_of_seqs 167 out of 200
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:00:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1830-1834//hhsearch_pdb/004522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bo5_A Histone-lysine N-methyl 1.0 1 1 42.1 3.7 10 324-333 109-118 (290)
2 2llk_A Cyclin-D-binding MYB-li 1.0 1 1 38.7 4.3 49 203-254 22-70 (73)
3 2lr8_A CAsp8-associated protei 1.0 1 1 38.6 0.0 48 205-252 15-62 (70)
4 2iw5_B Protein corest, REST co 1.0 1 1 37.8 5.5 44 554-599 133-176 (235)
5 2crg_A Metastasis associated p 1.0 1 1 35.3 5.2 45 554-599 8-52 (70)
6 2xag_B REST corepressor 1; ami 1.0 1 1 34.3 5.7 45 554-600 380-424 (482)
7 2cqr_A RSGI RUH-043, DNAJ homo 1.0 1 1 34.1 5.3 50 203-252 17-68 (73)
8 2yqk_A Arginine-glutamic acid 1.0 1 1 33.8 5.3 46 553-599 8-53 (63)
9 2eqr_A N-COR1, N-COR, nuclear 1.0 1 1 33.3 5.7 46 552-599 10-55 (61)
10 1ug2_A 2610100B20RIK gene prod 1.0 1 1 32.9 3.4 46 206-251 35-81 (95)
No 1
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=1.00 E-value=1 Score=42.07 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=4.6
Q ss_pred CCCCCCCHHC
Q ss_conf 8775211020
Q 004522 324 VPCGPHCYRS 333 (747)
Q Consensus 324 ~PCg~~Cyl~ 333 (747)
=+|++.|--.
T Consensus 109 C~C~~~C~Nr 118 (290)
T 3bo5_A 109 CRCSDHCRNR 118 (290)
T ss_dssp CCSCTTCTTC
T ss_pred CCCCCCCCCE
T ss_conf 9978977981
No 2
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=38.75 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 2033565401578877753099689999998442899278999999952021
Q 004522 203 EKKDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSKEE 254 (747)
Q Consensus 203 eK~eF~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~~~~seI~eRy~~L~~~~ 254 (747)
-|..|++.||.+|....++||.. -..||++|++++-+|+.||..|++..
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~lgRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND---WATIGAALGRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHHTSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 77998999999999999997979---99999892989999999999999871
No 3
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=38.59 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 335654015788777530996899999984428992789999999520
Q 004522 205 KDFVDSEDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILSK 252 (747)
Q Consensus 205 ~eF~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~~~~seI~eRy~~L~~ 252 (747)
.-|+..+|++|-...|+-|.+++.|..||+.|.+++.+|.+||..|.+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=1.00 E-value=1 Score=37.83 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9896145669999899861897559999531799757999999974
Q 004522 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 554 ~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
...||.-|..+|+.++..||+++..||+.| ++||-.||-.|.+.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~V--gTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVI--GNKSVVQVKNFFVN 176 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHH--SSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 799898999999999999886899999775--99999999999999
No 5
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=35.35 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9896145669999899861897559999531799757999999974
Q 004522 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 554 ~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
...||+.|..+|+.++..||+|+-.||+.+| ++||-.||-+|...
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFL-PWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCCHHHHHHHHHH
T ss_conf 8998999999999999996964999999995-99979999999871
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=1.00 E-value=1 Score=34.31 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 98961456699998998618975599995317997579999999741
Q 004522 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS 600 (747)
Q Consensus 554 ~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~~ 600 (747)
...||.-|..+|+.++..||+|.-.||+.+ |+||..||-.|.+..
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~V--gTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVI--GNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHH--SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHH--CCCCHHHHHHHHHHH
T ss_conf 899998999999999999786899999783--799899999999999
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=34.13 Aligned_cols=50 Identities=16% Similarity=0.450 Sum_probs=27.0
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHCC-CCHHHHHHHHHHHHC
Q ss_conf 20335654015788777530996-899999984428-992789999999520
Q 004522 203 EKKDFVDSEDYILRMTIKEVGLS-DATLESLAQCFS-RSPSEVKARYEILSK 252 (747)
Q Consensus 203 eK~eF~e~eD~~l~m~~~e~gls-d~Vl~~l~~~~~-~~~seI~eRy~~L~~ 252 (747)
.+..|+..||.+|..+++.||.. ..-...||.+|+ ++..++++||..|.+
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 7899899999999999998599887559999998189999999999999997
No 8
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=33.77 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 89896145669999899861897559999531799757999999974
Q 004522 553 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 553 ~~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
....||+.|..+|+.++..||+|+-.||+.+| +.||-.||-+|...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCCHHHHHHHHHC
T ss_conf 78986999999999999996843999999985-99769998998705
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=33.33 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 789896145669999899861897559999531799757999999974
Q 004522 552 SDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (747)
Q Consensus 552 ~~~~~Wt~~E~sL~~kl~eifG~NsClIArnLl~g~KTC~EV~~ym~~ 599 (747)
.....||+.|..+|+.++..||++.-.||..| .+||-.||-+|...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l--~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYL--ERKSVPDCVLYYYL 55 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHC--TTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 25899899999999999999687799999784--99989999999988
No 10
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=32.88 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHH
Q ss_conf 35654015788777530996899999984428-99278999999952
Q 004522 206 DFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (747)
Q Consensus 206 eF~e~eD~~l~m~~~e~glsd~Vl~~l~~~~~-~~~seI~eRy~~L~ 251 (747)
.|+..+|++|-...|+-|.+.+.|..|++.|+ +++.+|.+||..|.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 74230579999999964997007999999981599999999999999
Done!