Query 004523
Match_columns 747
No_of_seqs 214 out of 593
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 18:16:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004523.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1830-1834//hhsearch_pdb/004523hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 111.4 6.7 104 82-223 2-108 (111)
2 4gne_A Histone-lysine N-methyl 1.0 1 1 94.9 5.0 80 82-190 10-90 (107)
3 2kwj_A Zinc finger protein DPF 1.0 1 1 91.1 2.1 79 88-188 2-92 (114)
4 3v43_A Histone acetyltransfera 1.0 1 1 88.5 3.8 42 207-251 54-96 (112)
5 3u5n_A E3 ubiquitin-protein li 1.0 1 1 84.6 3.6 52 82-145 2-53 (207)
6 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 83.0 6.6 82 147-252 7-89 (111)
7 3v43_A Histone acetyltransfera 1.0 1 1 82.9 7.2 83 85-188 3-96 (112)
8 3o36_A Transcription intermedi 1.0 1 1 78.3 4.1 51 84-146 1-51 (184)
9 4gne_A Histone-lysine N-methyl 1.0 1 1 78.3 6.2 89 148-283 16-104 (107)
10 2kwj_A Zinc finger protein DPF 1.0 1 1 76.6 5.5 88 149-252 3-93 (114)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=111.42 Aligned_cols=104 Identities=24% Similarity=0.674 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCCCE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 778875433202778970---20277434455453224753100026986312498986416546224764343355788
Q 004523 82 KDENYFAVCAICDDGGDV---TFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGS 158 (747)
Q Consensus 82 ~dd~~DdVCaIC~dgGeL---LcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~qHqCFVCgklGs 158 (747)
..+.++++|.+|+++|++ |+|++ |.++||+.|+ ++...++ +.+.|+|++|. .|++|++.+.
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl----------~~~~~~~-~~~~W~C~~C~----~C~~C~~~~~ 65 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCL----------DIAVTPL-KRAGWQCPECK----VCQNCKQSGE 65 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSS-SCCEECTTTT----------TCCCCTT-TSTTCCCTTTC----CCTTTCCCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCCHHHH----------CCCCCCC-CCCCCCCCCCC----CCCCCCCCCC
T ss_conf 88899799957899888758859999-9977396770----------8865544-56686587678----2623476589
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999985001367875887862100023899924478999999843995227894344476775
Q 004523 159 SDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSE 223 (747)
Q Consensus 159 sD~ss~aeVfkCs~a~CGkfYHp~CL~~~l~P~~e~~a~~L~~ki~~~~~F~CPlH~C~~Ck~~e 223 (747)
...++.| ..|.+.||..|+.+.+.. + -...|.|| .|..|+.+.
T Consensus 66 -----~~~ll~C--d~C~~~yH~~Cl~ppl~~------------~-P~g~W~C~--~C~~c~~g~ 108 (111)
T 2ysm_A 66 -----DSKMLVC--DTCDKGYHTFCLQPVMKS------------V-PTNGWKCK--NCRICISGP 108 (111)
T ss_dssp -----CTTEEEC--SSSCCEEEGGGSSSCCSS------------C-CSSCCCCH--HHHCCSCSC
T ss_pred -----CCCEEEC--CCCCCHHHHHHCCCCCCC------------C-CCCCCCCC--CCCCCCCCC
T ss_conf -----8776589--999808869865876566------------8-89882992--882728789
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=94.90 Aligned_cols=80 Identities=25% Similarity=0.523 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77887543320277897020277-43445545322475310002698631249898641654622476434335578889
Q 004523 82 KDENYFAVCAICDDGGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSD 160 (747)
Q Consensus 82 ~dd~~DdVCaIC~dgGeLLcCdG-~C~RsFH~~C~~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~qHqCFVCgklGssD 160 (747)
....++++|.+|.++|+||+||+ .|+++||+.| ++++.. +.+.|+|+.|. |.+|++..
T Consensus 10 ~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~C----------l~L~~~---P~g~W~Cp~c~-----C~~C~k~~--- 68 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLC----------LNLTQP---PYGKWECPWHQ-----CDECSSAA--- 68 (107)
T ss_dssp CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGG----------GTCSSC---CSSCCCCGGGB-----CTTTCSBC---
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC----------CCCCCC---CCCCEECCCCC-----CCCCCCCC---
T ss_conf 8688979998479978475779999992652251----------868757---99888898999-----88177989---
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999985001367875887862100023899
Q 004523 161 KSSSQEVFPCVSATCGQFYHPECVSKLLHP 190 (747)
Q Consensus 161 ~ss~aeVfkCs~a~CGkfYHp~CL~~~l~P 190 (747)
-+.| ..|++.||..|+...+..
T Consensus 69 ------~~~C--~~Cp~sfC~~c~~g~l~~ 90 (107)
T 4gne_A 69 ------VSFC--EFCPHSFCKDHEKGALVP 90 (107)
T ss_dssp ------CEEC--SSSSCEECTTTCTTSCEE
T ss_pred ------CCCC--CCCCCCHHHHCCCCCCEE
T ss_conf ------8674--778710112115873110
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=91.08 Aligned_cols=79 Identities=25% Similarity=0.621 Sum_probs=52.0
Q ss_pred CCCCCCCCC----------CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 433202778----------9702027743445545322475310002698631--2498986416546224764343355
Q 004523 88 AVCAICDDG----------GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFACGM 155 (747)
Q Consensus 88 dVCaIC~dg----------GeLLcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~--ev~~~~~W~C~eC~~~qHqCFVCgk 155 (747)
++|.+|..+ |+||.|++ |+++||+.|+ ++... +..+.+.|.|++|. .|.+|+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~~C~~ 66 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCL----------QFTLNMTEAVKTYKWQCIECK----SCILCGT 66 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTT----------TCCHHHHHHHHHTTCCCGGGC----CCTTTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCHHHC----------CCHHHHHHCCCCCCCCCCCCC----CCCCCCC
T ss_conf 808658897534446799999869298-9983232138----------784664311687751756627----3375634
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 788899999850013678758878621000238
Q 004523 156 LGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 188 (747)
Q Consensus 156 lGssD~ss~aeVfkCs~a~CGkfYHp~CL~~~l 188 (747)
.+. ..+++.| ..|.+.||..|+.+.+
T Consensus 67 ~~~-----~~~ll~C--d~C~~~yH~~Cl~ppl 92 (114)
T 2kwj_A 67 SEN-----DDQLLFC--DDCDRGYHMYCLNPPV 92 (114)
T ss_dssp CTT-----TTTEEEC--SSSCCEEETTTSSSCC
T ss_pred CCC-----CCCEEEC--CCCCCCCCCCCCCCCC
T ss_conf 688-----8745774--8989410250459874
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=88.51 Aligned_cols=42 Identities=17% Similarity=0.572 Sum_probs=18.4
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 95227894-3444767755772654504343256210245799765
Q 004523 207 ESFTCPVH-KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 251 (747)
Q Consensus 207 ~~F~CPlH-~C~~Ck~~edk~~~e~qLi~C~RCPkAYH~kCLP~~i 251 (747)
..|.||.. .|.+|+..++. +.+|+.|+.|+.+||..||.+++
T Consensus 54 ~~W~C~~C~~C~vC~~~~~~---~~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 54 LRWQCIECKTCSSCRDQGKN---ADNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCTTTCCBTTTCCCCCT---TCCCEECTTTCCEECGGGCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCEEECCCCCCEEECCCCCCCC
T ss_conf 46530117754466686888---56568748998915663589998
No 5
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=84.61 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 7788754332027789702027743445545322475310002698631249898641654622
Q 004523 82 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 145 (747)
Q Consensus 82 ~dd~~DdVCaIC~dgGeLLcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 145 (747)
+++.++++|.+|++||+||+||+ |.++||..|+.+ +++.. +.+.|+|+.|..
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl~p--------~l~~~---p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEK-CPKVFHLTCHVP--------TLLSF---PSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSS-SSCEECTTTSSS--------CCSSC---CSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCC--------CCCCC---CCCCEEECCEEC
T ss_conf 87888898988899993677699-998438715899--------98888---998878684268
No 6
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=83.00 Aligned_cols=82 Identities=32% Similarity=0.738 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 76434335578889999985001367875887862100023899924478999999843995227894-34447677557
Q 004523 147 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 225 (747)
Q Consensus 147 qHqCFVCgklGssD~ss~aeVfkCs~a~CGkfYHp~CL~~~l~P~~e~~a~~L~~ki~~~~~F~CPlH-~C~~Ck~~edk 225 (747)
...|.+|+..|. ..+++.| ..|++.||+.|+.....+. ....|.||.. .|.+|+..++.
T Consensus 7 ~~~C~~C~~~g~-----~~~ll~C--~~C~~~~H~~Cl~~~~~~~-------------~~~~W~C~~C~~C~~C~~~~~~ 66 (111)
T 2ysm_A 7 GANCAVCDSPGD-----LLDQFFC--TTCGQHYHGMCLDIAVTPL-------------KRAGWQCPECKVCQNCKQSGED 66 (111)
T ss_dssp CSCBTTTCCCCC-----TTTSEEC--SSSCCEECTTTTTCCCCTT-------------TSTTCCCTTTCCCTTTCCCSCC
T ss_pred CCCCCCCCCCCC-----CCCCEEC--CCCCCCCCHHHHCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 799957899888-----7588599--9999773967708865544-------------5668658767826234765898
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 726545043432562102457997654
Q 004523 226 NVEDLQLAICRRCPKAYHRKCLPTEIT 252 (747)
Q Consensus 226 ~~~e~qLi~C~RCPkAYH~kCLP~~i~ 252 (747)
.+|+.|..|+++||..||.++..
T Consensus 67 ----~~ll~Cd~C~~~yH~~Cl~ppl~ 89 (111)
T 2ysm_A 67 ----SKMLVCDTCDKGYHTFCLQPVMK 89 (111)
T ss_dssp ----TTEEECSSSCCEEEGGGSSSCCS
T ss_pred ----CCEEECCCCCCHHHHHHCCCCCC
T ss_conf ----77658999980886986587656
No 7
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=82.88 Aligned_cols=83 Identities=20% Similarity=0.538 Sum_probs=62.4
Q ss_pred CCCCCCCCCCC---------CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 87543320277---------89702027743445545322475310002698631--24989864165462247643433
Q 004523 85 NYFAVCAICDD---------GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFAC 153 (747)
Q Consensus 85 ~~DdVCaIC~d---------gGeLLcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~--ev~~~~~W~C~eC~~~qHqCFVC 153 (747)
....+|.+|.. +|+||.|++ |.++||+.|+ ++... ...+.+.|+|++|. .|.+|
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~vC 67 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCL----------KFSPELTVRVKALRWQCIECK----TCSSC 67 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHH----------TCCHHHHHHHHTSCCCCTTTC----CBTTT
T ss_pred CCCCCCCCCCCCHHHCCCCCCHHCEEHHH-CCCCCCCCHH----------CCCHHHHHHHHCCCCCCCCCC----CCCCC
T ss_conf 66761310389334276899111637534-4998897035----------388899987542465301177----54466
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 55788899999850013678758878621000238
Q 004523 154 GMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 188 (747)
Q Consensus 154 gklGssD~ss~aeVfkCs~a~CGkfYHp~CL~~~l 188 (747)
+..|.. ..+++.| ..|.+.||..|+.+.+
T Consensus 68 ~~~~~~----~~~ll~C--d~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 68 RDQGKN----ADNMLFC--DSCDRGFHMECCDPPL 96 (112)
T ss_dssp CCCCCT----TCCCEEC--TTTCCEECGGGCSSCC
T ss_pred CCCCCC----CCCEEEC--CCCCCEEECCCCCCCC
T ss_conf 686888----5656874--8998915663589998
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=78.32 Aligned_cols=51 Identities=24% Similarity=0.595 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 887543320277897020277434455453224753100026986312498986416546224
Q 004523 84 ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 146 (747)
Q Consensus 84 d~~DdVCaIC~dgGeLLcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 146 (747)
+.++++|.+|++||+||+||+ |.++||..|+.+ +++.. +.+.|+|+.|...
T Consensus 1 ~~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~C~~p--------~l~~~---p~~~W~C~~C~~~ 51 (184)
T 3o36_A 1 SPNEDWCAVCQNGGELLCCEK-CPKVFHLSCHVP--------TLTNF---PSGEWICTFCRDL 51 (184)
T ss_dssp CCSCSSCTTTCCCSSCEECSS-SSCEECTTTSSS--------CCSSC---CSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCC--------CCCCC---CCCCEECCCCCCC
T ss_conf 999995411799990566299-995308113689--------87879---9988789255686
No 9
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=78.25 Aligned_cols=89 Identities=26% Similarity=0.594 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64343355788899999850013678758878621000238999244789999998439952278943444767755772
Q 004523 148 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNV 227 (747)
Q Consensus 148 HqCFVCgklGssD~ss~aeVfkCs~a~CGkfYHp~CL~~~l~P~~e~~a~~L~~ki~~~~~F~CPlH~C~~Ck~~edk~~ 227 (747)
..|++|+. +++++.|....|.+.||..||.....| ...|.||.|.|..|+....
T Consensus 16 ~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~~P---------------~g~W~Cp~c~C~~C~k~~~--- 69 (107)
T 4gne_A 16 DYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQPP---------------YGKWECPWHQCDECSSAAV--- 69 (107)
T ss_dssp SSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSSCC---------------SSCCCCGGGBCTTTCSBCC---
T ss_pred CCCCCCCC--------CCCEEEECCCCCCCCCCCCCCCCCCCC---------------CCCEECCCCCCCCCCCCCC---
T ss_conf 99984799--------784757799999926522518687579---------------9888898999881779898---
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 65450434325621024579976544465501333212003789955798057632
Q 004523 228 EDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKI 283 (747)
Q Consensus 228 ~e~qLi~C~RCPkAYH~kCLP~~i~f~~~~~e~~~raW~~lL~~~riLI~C~kH~i 283 (747)
+.|..||.|||.+|++..+... +. ....+|..|+.
T Consensus 70 -----~~C~~Cp~sfC~~c~~g~l~~~---------------~~-~~~~c~~~~~~ 104 (107)
T 4gne_A 70 -----SFCEFCPHSFCKDHEKGALVPS---------------AL-EGRLCCSEHDP 104 (107)
T ss_dssp -----EECSSSSCEECTTTCTTSCEEC---------------TT-TTCEECTTSCT
T ss_pred -----CCCCCCCCCHHHHCCCCCCEEC---------------CC-CCCEECCCCCC
T ss_conf -----6747787101121158731102---------------78-89666677888
No 10
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=76.55 Aligned_cols=88 Identities=31% Similarity=0.656 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 43433557888999--9985001367875887862100023899924478999999843995227894-34447677557
Q 004523 149 QCFACGMLGSSDKS--SSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 225 (747)
Q Consensus 149 qCFVCgklGssD~s--s~aeVfkCs~a~CGkfYHp~CL~~~l~P~~e~~a~~L~~ki~~~~~F~CPlH-~C~~Ck~~edk 225 (747)
.|.+|...+..+.. .+.+++.| ..|++.||+.|+.... .+.. ......|.||.- .|.+|+..++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C--~~C~~~~H~~Cl~~~~---------~~~~-~~~~~~W~C~~C~~C~~C~~~~~- 69 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSC--ADCGRSGHPTCLQFTL---------NMTE-AVKTYKWQCIECKSCILCGTSEN- 69 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEEC--SSSCCEECTTTTTCCH---------HHHH-HHHHTTCCCGGGCCCTTTTCCTT-
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEE--CCCCCCCCHHHCCCHH---------HHHH-CCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 086588975344467999998692--9899832321387846---------6431-16877517566273375634688-
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 726545043432562102457997654
Q 004523 226 NVEDLQLAICRRCPKAYHRKCLPTEIT 252 (747)
Q Consensus 226 ~~~e~qLi~C~RCPkAYH~kCLP~~i~ 252 (747)
+..|+.|+.|+.+||..||.+++.
T Consensus 70 ---~~~ll~Cd~C~~~yH~~Cl~ppl~ 93 (114)
T 2kwj_A 70 ---DDQLLFCDDCDRGYHMYCLNPPVA 93 (114)
T ss_dssp ---TTTEEECSSSCCEEETTTSSSCCS
T ss_pred ---CCCEEECCCCCCCCCCCCCCCCCC
T ss_conf ---874577489894102504598746
Done!