BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004524
(747 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DWA|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1:
Structure Prior To Irradiation
pdb|1DWF|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 2:
Structure After Irradiation With 9.110e15 PhotonsMM2
pdb|1DWG|M Chain M, Study On Radiation Damage On A Cryocooled Crystal: Part 3
Structure After Irradiation With 18.210e15 PhotonsMM2.
pdb|1DWH|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 4:
Structure After Irradiation With 27.210e15 PhotonsMM2
pdb|1DWI|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 5:
Structure After Irradiation With 54.010e15 PhotonsMM2
pdb|1DWJ|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Refined
Part 6: Structure After A Radiation Dose Of 5410e15
PhotonsMM2
Length = 499
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 29 NLVAGRFENIFLDQRFRDCRYRQPDPTPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQM 88
NLV G ++ FL + +Y QP P P+N + + + D+ + +A YI +
Sbjct: 314 NLVKGSYD--FLGLNYYFTQYAQPSPNPVNSTNHTAM---MDAGAKLTYINASGHYIGPL 368
Query: 89 LMEEDIEEKNCMLQESLDLQAAEKSFYDVL----GKKYPPSPDHSLTYFHQNGESPDGDT 144
++ + + ++ K Y V+ K Y P L Y +NG S GD
Sbjct: 369 FEKDKADSTD-------NIYYYPKGIYSVMDYFKNKYYNP-----LIYVTENGISTPGDE 416
Query: 145 SRN 147
+RN
Sbjct: 417 NRN 419
>pdb|1E6Q|M Chain M, Myrosinase From Sinapis Alba With The Bound Transition
State Analogue Gluco-Tetrazole
pdb|1E6X|M Chain M, Myrosinase From Sinapis Alba With A Bound Transition State
Analogue,D-Glucono-1,5-Lactone
pdb|1E70|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba
pdb|1E71|M Chain M, Myrosinase From Sinapis Alba With Bound Ascorbate
pdb|1E72|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate Or Ascorbate
pdb|1E73|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba With Bound
L-Ascorbate
pdb|1E6S|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate
pdb|1E4M|M Chain M, Myrosinase From Sinapis Alba
pdb|1W9B|M Chain M, S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
pdb|1W9D|M Chain M, S. Alba Myrosinase In Complex With S-Ethyl
Phenylacetothiohydroximate-O-Sulfate
pdb|2WXD|M Chain M, A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound To
Plant Myrosinase
Length = 501
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 29 NLVAGRFENIFLDQRFRDCRYRQPDPTPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQM 88
NLV G ++ FL + +Y QP P P+N + + + D+ + +A YI +
Sbjct: 316 NLVKGSYD--FLGLNYYFTQYAQPSPNPVNSTNHTAM---MDAGAKLTYINASGHYIGPL 370
Query: 89 LMEEDIEEKNCMLQESLDLQAAEKSFYDVL----GKKYPPSPDHSLTYFHQNGESPDGDT 144
++ + + ++ K Y V+ K Y P L Y +NG S GD
Sbjct: 371 FEKDKADSTD-------NIYYYPKGIYSVMDYFKNKYYNP-----LIYVTENGISTPGDE 418
Query: 145 SRN 147
+RN
Sbjct: 419 NRN 421
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 111 EKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQN 170
E +Y VL K S+T Q SP+ +++ H S SSY ID + +
Sbjct: 11 EPQWYRVLEKD-------SVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDD 63
Query: 171 SGEY-FNSQLQSL 182
SGEY +QL +L
Sbjct: 64 SGEYRCQTQLSTL 76
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 111 EKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQN 170
E +Y VL K S+T Q SP+ ++++ H S SSY ID + +
Sbjct: 13 EPQWYSVLEKD-------SVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVND 65
Query: 171 SGEY 174
SGEY
Sbjct: 66 SGEY 69
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 111 EKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQN 170
E +Y VL K S+T Q SP+ ++++ H S SSY ID + +
Sbjct: 14 EPQWYSVLEKD-------SVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVND 66
Query: 171 SGEY 174
SGEY
Sbjct: 67 SGEY 70
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 111 EKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQN 170
E +Y VL K S+T Q SP+ ++++ H S SSY ID + +
Sbjct: 13 EPQWYSVLEKD-------SVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVND 65
Query: 171 SGEY 174
SGEY
Sbjct: 66 SGEY 69
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 111 EKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQN 170
E +Y VL K S+T Q SP+ +++ H S SSY ID + +
Sbjct: 13 EPQWYRVLEKD-------SVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDD 65
Query: 171 SGEY-FNSQLQSL 182
SGEY +QL +L
Sbjct: 66 SGEYRCQTQLSTL 78
>pdb|1MYR|A Chain A, Myrosinase From Sinapis Alba
Length = 501
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 21/122 (17%)
Query: 29 NLVAGRFENIFLDQRFRDCRYRQPDPTPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQM 88
NLV G ++ FL + +Y QP P P+N + + + D+ + +A YI
Sbjct: 316 NLVKGSYD--FLGLNYYFTQYAQPSPNPVNATNHTAM---MDAGAKLTYINASGHYIGP- 369
Query: 89 LMEEDIEEKNCMLQESLDLQAAEKSFYDVL----GKKYPPSPDHSLTYFHQNGESPDGDT 144
L E D + S ++ K Y V+ K Y P L Y +NG S G
Sbjct: 370 LFESDGGDG------SSNIYYYPKGIYSVMDYFKNKYYNP-----LIYVTENGISTPGSE 418
Query: 145 SR 146
+R
Sbjct: 419 NR 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,096,034
Number of Sequences: 62578
Number of extensions: 911707
Number of successful extensions: 2092
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2084
Number of HSP's gapped (non-prelim): 9
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)