BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004525
(747 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 25/330 (7%)
Query: 26 GNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHEL 85
G + ++NG ++ +A IHYPR W ++ K G NTI YVFWN HE
Sbjct: 6 GTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEP 65
Query: 86 SPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDT 145
G+Y F G+ ++ F ++ Q+ Y+I+R GP+V AE+ GG+P WL R
Sbjct: 66 EEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQD 125
Query: 146 EPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYALWAAK 205
+ ++ F+ + + L S+GG II QV +
Sbjct: 126 PYYXERVKLFLNEVGKQLA--DLQISKGGNIIXVQVENEYGAFGIDKPYISEI----RDX 179
Query: 206 MAVAQNIGVPWIMCQ-----QFDTPDPVINTCN----SFYCDQF---TPHSPSMPKIWTE 253
+ A GVP C + + D ++ T N + +QF P P +E
Sbjct: 180 VKQAGFTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSE 239
Query: 254 NWPGWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPF----- 308
W GWF +G + R +E++ + S + Y HGGT+FG G F
Sbjct: 240 FWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSP 298
Query: 309 ITTSYDYEAPIDEYGLPRNPKWGHLKELHG 338
TSYDY+API+E G PK+ ++ L G
Sbjct: 299 TCTSYDYDAPINESG-KVTPKYLEVRNLLG 327
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 34/109 (31%)
Query: 621 MEPPKNQPLTWYKAVVKQPPGDEPIGLDMLKMGKGLAWLNGEEIGRYWPRKSRKSSPHDE 680
E +NQP + GD L+ KG W+NG IGRYW
Sbjct: 501 QENAENQPAYYRSTFNLNELGD--TFLNXXNWSKGXVWVNGHAIGRYW------------ 546
Query: 681 CVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKG 729
+ P + + ++P W K EN ++I + G
Sbjct: 547 ---------EIGPQQTL-----------YVPGCWLKKGENEIIILDXAG 575
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 132/310 (42%), Gaps = 27/310 (8%)
Query: 37 INGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRF 96
++G+ I+S AIHY R P W + K G NT+E+YV WN HE G+++F G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 97 NLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPF----KYHM 152
+L KF++I Q +Y I+R PF+ AE+ +GG+P WL + +D +Y+
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLTKNMRIRSSDPAYIEAVGRYYD 131
Query: 153 QKFMTLI---------VDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYALWA 203
Q L+ + MM+ E + S G + W
Sbjct: 132 QLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGPWR 191
Query: 204 AKMAVAQNIGVPWIMCQQFDTPDPV-INTCNSFYCDQFTPHSPSMPKIWTENWPGWFKTF 262
A + I + F + P + F F H P + E W GWF +
Sbjct: 192 ATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEF----FDEHGKKWPLMCMEFWDGWFNRW 247
Query: 263 GGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPF-------ITTSYDY 315
R +++A +V ++G N YM+HGGTNFG G TSYDY
Sbjct: 248 KEPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDY 305
Query: 316 EAPIDEYGLP 325
+A +DE G P
Sbjct: 306 DALLDEEGNP 315
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 632 YKAVVKQPPGDEPIGLDMLKMGKGLAWLNGEEIGRYW 668
Y V++P + LD+ + GKG+A++NG+ +GR+W
Sbjct: 511 YDFTVEEP---KDTYLDLSEFGKGVAFVNGQNLGRFW 544
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 136/311 (43%), Gaps = 18/311 (5%)
Query: 28 VTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSP 87
+ Y S + +G+ IS +IHY R W + + K G+N I++YV WN HE P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 88 GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEP 147
G+Y F ++ F+++ + + +ILR GP++ AE+ GG+P WL + R+
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 148 FKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVX----XXXXXXXXXXXXXXKRYALWA 203
+ + K++ +++ MK L GGP+I QV KR+
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 188
Query: 204 AKMAV---AQNIGVPWIMCQQFDTPDPVIN-TCNSFYCDQFTPH---SPSMPKIWTENWP 256
V ++ C ++ S D F P P I +E +
Sbjct: 189 GDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYT 248
Query: 257 GWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFG--RTAGGPFIT--TS 312
GW +G +E +A S+ +G SV N YM+ GGTNF A P+ TS
Sbjct: 249 GWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSPYAAQPTS 307
Query: 313 YDYEAPIDEYG 323
YDY+AP+ E G
Sbjct: 308 YDYDAPLSEAG 318
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 654 KGLAWLNGEEIGRYWPRK 671
KG W+NG +GRYWP +
Sbjct: 555 KGQVWINGFNLGRYWPAR 572
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 152/377 (40%), Gaps = 46/377 (12%)
Query: 28 VTYDSRSLIINGRRELIISAAIH-YPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELS 86
VT+D SL ++G R +I S +H + VP ++ + + K G NT+ YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 87 PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE 146
PG++ G F+L F + +A +Y++ R GP++ AE + GG P WL + G + R D
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKL-RTDAP 144
Query: 147 PFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXKRYALWAAKM 206
+ + ++ I ++ + ++ + GGP+IL Q K Y +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 207 AVAQNIGVPWIMCQQFDTPD------------------PVINTCN--SFYCDQFTPH--- 243
A I VP I F P+ C S + D P
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 244 ------SPSMPKIWTENWPGWFKTFGGRDPHRPSEDIAFSVARFFQK-----GGSVHNYY 292
SPS P E G F FGG + S + R F K G ++ N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 293 MYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGER 352
M GGTN+G G P TSYDY A I E K+ LK L G +
Sbjct: 323 MTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELK-LQGQFLKVSPGYITATP 380
Query: 353 SNLSLGSSQEADVYADS 369
N + G VY+DS
Sbjct: 381 ENATQG------VYSDS 391
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 141/357 (39%), Gaps = 40/357 (11%)
Query: 28 VTYDSRSLIINGRRELIISAAIH-YPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELS 86
VT+D S+ +NG R +I S +H Y V ++ + ++ K G N + YV W E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 87 PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE 146
PG Y G F+L F ++A +Y++ R GP++ AE + GG P WL + G + R E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDG-ILRTSDE 124
Query: 147 PFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVXXXXXXXXXXXXXXXK-RYALWAAK 205
+ + + I + + ++ + GGPIIL Q Y +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 206 MAVAQNIGVPWIMCQQ--------------------------FDTPDPVI---NTCNSFY 236
A I VP+I FD +P +++
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 237 CDQFTPHSPSMPKIWTENWPGWFKTFGGRDPHRPSEDIAFSVARFFQK-----GGSVHNY 291
SPS P E G F +GG + + + R F K G + N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 292 YMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALL 348
YM GGTN+G G P TSYDY + I E K+ LK L K+ L+
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV 358
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 591 YSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLT 630
Y+W ++GL+ E+ G+YN + ++T P N+P+
Sbjct: 12 YAWLKELGLREENEGVYNGSWGGRGEVITTYCPANNEPIA 51
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 253 ENWPGW--FKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFIT 310
E+ PG F G P ++D AF F ++ SV +Y+ YHGG G+ G F
Sbjct: 421 EDLPGVEGFNILGIPLPKDQTDDAAFET--FCRE--SVASYWHYHGGCLVGKVLDGDFRV 476
Query: 311 TSYDYEAPIDEYGLPRNP 328
T + +D P P
Sbjct: 477 TGINALRVVDGSTFPYTP 494
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 253 ENWPGW--FKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFIT 310
E+ PG F G P ++D AF F ++ SV +Y+ YHGG G+ G F
Sbjct: 421 EDLPGVEGFNILGIPLPKDQTDDAAFET--FCRE--SVASYWHYHGGCLVGKVLDGDFRV 476
Query: 311 TSYDYEAPIDEYGLPRNP 328
T + +D P P
Sbjct: 477 TGINALRVVDGSTFPYTP 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,130,652
Number of Sequences: 62578
Number of extensions: 1155678
Number of successful extensions: 2237
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 21
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)