Query 004525
Match_columns 747
No_of_seqs 243 out of 1515
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 5E-189 1E-193 1624.7 65.6 713 14-744 16-730 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 8E-150 2E-154 1253.2 42.5 622 23-743 15-640 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.2E-88 6.8E-93 730.0 18.8 297 34-339 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 4.2E-37 9.2E-42 354.1 12.0 289 28-325 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 4.9E-21 1.1E-25 211.9 13.2 263 49-342 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 7.2E-11 1.6E-15 126.9 17.8 192 28-260 1-212 (298)
7 PF13364 BetaGal_dom4_5: Beta- 99.0 4.7E-10 1E-14 104.0 6.4 69 626-725 33-104 (111)
8 PRK10150 beta-D-glucuronidase; 99.0 1.1E-08 2.4E-13 120.5 17.1 158 27-219 277-448 (604)
9 PF00150 Cellulase: Cellulase 98.9 3.5E-08 7.7E-13 103.6 14.7 161 38-220 4-172 (281)
10 PRK10340 ebgA cryptic beta-D-g 98.9 4.3E-08 9.4E-13 121.4 17.6 186 27-255 319-514 (1021)
11 PRK09525 lacZ beta-D-galactosi 98.8 6E-08 1.3E-12 120.1 18.0 148 27-219 335-488 (1027)
12 COG3250 LacZ Beta-galactosidas 98.8 7.7E-08 1.7E-12 115.5 17.0 135 26-207 284-424 (808)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 1E-07 2.2E-12 88.5 9.0 84 469-559 24-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.2 1.3E-05 2.9E-10 78.5 11.8 99 475-579 63-164 (167)
15 smart00633 Glyco_10 Glycosyl h 98.0 1.7E-05 3.8E-10 83.7 8.6 116 80-220 3-125 (254)
16 PF03198 Glyco_hydro_72: Gluca 97.8 0.00017 3.6E-09 77.8 12.2 154 25-216 8-179 (314)
17 TIGR03356 BGL beta-galactosida 97.7 8.2E-05 1.8E-09 84.5 7.8 97 57-165 54-151 (427)
18 PLN02161 beta-amylase 97.5 0.00031 6.7E-09 79.5 9.5 114 57-181 117-262 (531)
19 PLN02705 beta-amylase 97.5 0.00034 7.4E-09 80.3 9.2 79 56-140 267-357 (681)
20 PLN02905 beta-amylase 97.4 0.00053 1.1E-08 79.1 9.5 77 58-140 287-375 (702)
21 PLN02801 beta-amylase 97.4 0.00046 1E-08 78.2 8.8 117 55-181 35-183 (517)
22 PF13204 DUF4038: Protein of u 97.4 0.00036 7.7E-09 75.4 7.7 225 32-286 2-274 (289)
23 PLN00197 beta-amylase; Provisi 97.4 0.00064 1.4E-08 77.6 9.5 80 55-140 125-216 (573)
24 PLN02803 beta-amylase 97.3 0.00078 1.7E-08 76.7 9.8 114 57-181 107-252 (548)
25 PF01373 Glyco_hydro_14: Glyco 97.2 0.00051 1.1E-08 76.5 6.6 111 59-181 18-152 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.0 0.00094 2E-08 73.2 5.8 158 44-221 11-179 (320)
27 COG3693 XynA Beta-1,4-xylanase 97.0 0.0035 7.7E-08 67.7 9.7 133 66-221 55-194 (345)
28 PRK10150 beta-D-glucuronidase; 96.9 0.0049 1.1E-07 73.2 11.5 75 477-557 62-137 (604)
29 PF00232 Glyco_hydro_1: Glycos 96.8 0.0012 2.5E-08 75.8 5.1 96 58-165 59-156 (455)
30 PF02837 Glyco_hydro_2_N: Glyc 96.6 0.003 6.4E-08 61.9 5.1 67 626-725 66-136 (167)
31 PF14488 DUF4434: Domain of un 96.5 0.024 5.2E-07 56.5 11.4 135 52-217 15-158 (166)
32 PRK15014 6-phospho-beta-glucos 96.5 0.0063 1.4E-07 70.2 8.0 97 57-165 69-168 (477)
33 PRK09852 cryptic 6-phospho-bet 96.4 0.0066 1.4E-07 70.0 7.6 96 57-164 71-169 (474)
34 COG2730 BglC Endoglucanase [Ca 96.4 0.0093 2E-07 67.5 8.5 119 55-187 66-193 (407)
35 PF07745 Glyco_hydro_53: Glyco 96.3 0.014 2.9E-07 64.4 9.0 105 60-186 27-136 (332)
36 PRK09525 lacZ beta-D-galactosi 96.3 0.021 4.6E-07 71.6 11.4 93 479-580 119-217 (1027)
37 PRK10340 ebgA cryptic beta-D-g 96.3 0.016 3.4E-07 72.9 10.2 92 480-580 109-205 (1021)
38 PRK13511 6-phospho-beta-galact 96.1 0.014 3E-07 67.4 8.0 95 57-163 54-149 (469)
39 PLN02998 beta-glucosidase 96.1 0.0055 1.2E-07 71.0 4.4 100 57-164 82-183 (497)
40 TIGR01233 lacG 6-phospho-beta- 95.9 0.02 4.4E-07 66.0 8.1 96 57-164 53-149 (467)
41 PRK09593 arb 6-phospho-beta-gl 95.9 0.0093 2E-07 68.9 5.2 100 57-164 73-175 (478)
42 PLN02814 beta-glucosidase 95.8 0.0075 1.6E-07 70.0 4.2 100 57-164 77-178 (504)
43 PRK09589 celA 6-phospho-beta-g 95.7 0.011 2.3E-07 68.4 4.6 100 57-164 67-169 (476)
44 COG3867 Arabinogalactan endo-1 95.6 0.063 1.4E-06 57.5 9.3 119 58-194 64-191 (403)
45 PLN02849 beta-glucosidase 95.5 0.012 2.6E-07 68.4 4.4 100 57-164 79-180 (503)
46 PF14871 GHL6: Hypothetical gl 95.5 0.08 1.7E-06 50.9 9.0 98 61-163 4-123 (132)
47 PF02638 DUF187: Glycosyl hydr 94.4 0.15 3.3E-06 55.8 8.7 118 55-183 17-162 (311)
48 COG2723 BglB Beta-glucosidase/ 93.8 0.081 1.8E-06 60.3 5.2 96 57-164 59-157 (460)
49 PRK09936 hypothetical protein; 92.7 0.27 5.8E-06 53.0 6.9 58 52-115 33-91 (296)
50 PF02055 Glyco_hydro_30: O-Gly 92.7 0.7 1.5E-05 53.9 10.9 333 40-402 74-490 (496)
51 smart00812 Alpha_L_fucos Alpha 92.5 21 0.00046 40.4 21.9 245 54-351 81-341 (384)
52 TIGR01515 branching_enzym alph 91.9 2.3 5E-05 50.9 14.2 70 47-116 142-226 (613)
53 COG3934 Endo-beta-mannanase [C 91.5 0.12 2.6E-06 58.6 2.6 156 35-208 4-168 (587)
54 smart00642 Aamy Alpha-amylase 90.9 0.55 1.2E-05 46.7 6.5 64 59-122 21-96 (166)
55 PRK05402 glycogen branching en 90.5 2.4 5.3E-05 51.8 12.7 53 64-116 273-335 (726)
56 PRK14706 glycogen branching en 89.8 4.7 0.0001 48.6 14.1 50 64-116 175-237 (639)
57 PRK12568 glycogen branching en 89.2 5.9 0.00013 48.3 14.3 54 62-118 275-341 (730)
58 COG1649 Uncharacterized protei 88.8 2.2 4.7E-05 48.6 9.7 123 55-186 62-210 (418)
59 TIGR00542 hxl6Piso_put hexulos 88.8 5.6 0.00012 42.3 12.6 127 56-214 15-149 (279)
60 PLN02447 1,4-alpha-glucan-bran 88.3 11 0.00024 46.2 15.8 60 58-118 252-322 (758)
61 PRK14705 glycogen branching en 87.0 10 0.00022 48.9 14.9 52 62-116 771-835 (1224)
62 PRK09441 cytoplasmic alpha-amy 86.5 1 2.2E-05 52.1 5.7 68 49-116 7-101 (479)
63 PF01229 Glyco_hydro_39: Glyco 85.9 1.9 4.1E-05 50.1 7.4 103 46-164 28-146 (486)
64 KOG2230 Predicted beta-mannosi 84.5 2.5 5.4E-05 49.2 7.2 150 32-221 327-494 (867)
65 PRK13210 putative L-xylulose 5 84.3 8.8 0.00019 40.6 11.1 131 57-214 16-149 (284)
66 PRK12313 glycogen branching en 82.9 2.1 4.6E-05 51.4 6.3 51 63-116 177-240 (633)
67 PF13200 DUF4015: Putative gly 82.1 4.8 0.0001 44.3 8.1 111 56-167 12-137 (316)
68 PF00128 Alpha-amylase: Alpha 81.7 1.5 3.3E-05 46.2 4.0 57 60-116 7-72 (316)
69 TIGR02402 trehalose_TreZ malto 80.2 2.8 6.2E-05 49.4 5.9 53 61-116 115-180 (542)
70 PF14307 Glyco_tran_WbsX: Glyc 79.2 18 0.00038 40.3 11.5 136 55-219 56-196 (345)
71 PF05913 DUF871: Bacterial pro 79.1 2.2 4.7E-05 47.8 4.3 72 45-122 2-73 (357)
72 PRK01060 endonuclease IV; Prov 78.7 29 0.00063 36.8 12.6 93 59-180 14-109 (281)
73 TIGR02631 xylA_Arthro xylose i 78.5 33 0.00073 38.8 13.5 91 55-164 30-125 (382)
74 TIGR02403 trehalose_treC alpha 77.4 3.2 7E-05 49.0 5.3 56 59-116 29-95 (543)
75 TIGR01531 glyc_debranch glycog 77.1 5.5 0.00012 51.4 7.4 113 33-151 103-235 (1464)
76 PF06832 BiPBP_C: Penicillin-B 76.4 4.5 9.7E-05 35.7 4.7 50 503-560 34-84 (89)
77 cd00019 AP2Ec AP endonuclease 76.2 23 0.00049 37.6 10.9 54 57-114 10-64 (279)
78 PLN02960 alpha-amylase 75.8 5.1 0.00011 49.5 6.4 57 60-116 420-486 (897)
79 PRK13209 L-xylulose 5-phosphat 75.4 22 0.00049 37.7 10.6 125 58-214 22-154 (283)
80 PRK09505 malS alpha-amylase; R 75.2 5.5 0.00012 48.4 6.5 58 59-116 232-312 (683)
81 PRK09856 fructoselysine 3-epim 75.0 41 0.00089 35.4 12.5 52 57-113 13-64 (275)
82 TIGR02104 pulA_typeI pullulana 74.5 5 0.00011 48.0 5.9 55 61-116 168-249 (605)
83 PRK10785 maltodextrin glucosid 74.3 5.8 0.00013 47.4 6.4 57 60-116 182-246 (598)
84 TIGR03234 OH-pyruv-isom hydrox 73.3 59 0.0013 33.9 13.0 43 58-114 15-57 (254)
85 PF01261 AP_endonuc_2: Xylose 73.2 6.7 0.00014 38.9 5.6 124 63-214 1-128 (213)
86 KOG2024 Beta-Glucuronidase GUS 72.3 6.2 0.00013 42.2 5.2 63 465-528 70-135 (297)
87 PRK10933 trehalose-6-phosphate 72.1 7 0.00015 46.3 6.3 55 59-116 35-101 (551)
88 PF08308 PEGA: PEGA domain; I 70.5 4.5 9.8E-05 34.0 3.1 46 504-561 3-48 (71)
89 TIGR02456 treS_nterm trehalose 70.3 5.7 0.00012 46.8 5.0 57 59-115 30-95 (539)
90 COG0296 GlgB 1,4-alpha-glucan 69.4 7.9 0.00017 46.4 5.8 54 59-115 167-233 (628)
91 cd04908 ACT_Bt0572_1 N-termina 69.2 17 0.00037 30.0 6.3 55 56-114 12-66 (66)
92 PRK09997 hydroxypyruvate isome 68.4 76 0.0016 33.3 12.6 42 59-114 17-58 (258)
93 PF02679 ComA: (2R)-phospho-3- 68.4 7.9 0.00017 41.1 5.0 52 56-117 83-134 (244)
94 PRK13398 3-deoxy-7-phosphohept 67.9 19 0.0004 38.8 7.9 80 27-116 15-98 (266)
95 PF13199 Glyco_hydro_66: Glyco 67.7 97 0.0021 37.0 14.2 77 58-134 119-210 (559)
96 cd06593 GH31_xylosidase_YicI Y 67.6 9.5 0.0002 41.5 5.7 68 55-122 22-92 (308)
97 PLN02361 alpha-amylase 65.8 12 0.00027 42.5 6.3 57 60-116 32-96 (401)
98 PF14587 Glyco_hydr_30_2: O-Gl 64.9 48 0.001 37.6 10.5 122 85-221 93-227 (384)
99 PF14683 CBM-like: Polysacchar 64.4 6.2 0.00013 39.5 3.2 64 651-730 91-154 (167)
100 PF02065 Melibiase: Melibiase; 63.1 38 0.00082 38.6 9.5 89 50-138 51-148 (394)
101 PF01791 DeoC: DeoC/LacD famil 62.9 3.1 6.7E-05 43.5 0.8 53 60-115 79-131 (236)
102 PRK14582 pgaB outer membrane N 61.9 32 0.0007 41.8 9.1 110 57-185 334-468 (671)
103 PRK14510 putative bifunctional 60.0 12 0.00027 48.4 5.5 56 61-116 191-267 (1221)
104 TIGR02401 trehalose_TreY malto 59.4 17 0.00038 44.9 6.3 62 57-118 16-87 (825)
105 KOG0496 Beta-galactosidase [Ca 59.4 6.7 0.00014 46.7 2.7 34 309-342 325-359 (649)
106 TIGR00677 fadh2_euk methylenet 59.0 33 0.00072 37.1 7.8 109 43-165 130-251 (281)
107 PRK12677 xylose isomerase; Pro 58.5 2.2E+02 0.0047 32.4 14.5 89 58-164 32-124 (384)
108 TIGR02100 glgX_debranch glycog 58.2 15 0.00032 44.9 5.5 55 62-116 189-265 (688)
109 PF11324 DUF3126: Protein of u 58.0 17 0.00037 30.6 4.2 24 509-532 25-48 (63)
110 COG3623 SgaU Putative L-xylulo 58.0 1.5E+02 0.0032 31.6 11.8 23 56-78 17-39 (287)
111 PF03659 Glyco_hydro_71: Glyco 56.4 30 0.00064 39.3 7.2 54 54-116 14-67 (386)
112 KOG0626 Beta-glucosidase, lact 56.2 21 0.00045 41.8 5.9 113 58-180 92-208 (524)
113 cd06589 GH31 The enzymes of gl 55.7 30 0.00066 36.8 6.8 65 55-120 22-90 (265)
114 PRK14511 maltooligosyl trehalo 55.2 23 0.00049 44.2 6.4 58 57-118 20-91 (879)
115 TIGR03849 arch_ComA phosphosul 54.8 22 0.00048 37.6 5.4 53 56-118 70-122 (237)
116 PRK03705 glycogen debranching 54.2 20 0.00043 43.5 5.6 55 62-116 184-262 (658)
117 cd06591 GH31_xylosidase_XylS X 54.0 20 0.00044 39.3 5.3 72 49-121 13-91 (319)
118 PLN00196 alpha-amylase; Provis 54.0 27 0.00058 40.2 6.4 57 60-116 47-112 (428)
119 PF08531 Bac_rhamnosid_N: Alph 53.3 61 0.0013 32.3 8.1 56 503-559 6-68 (172)
120 cd06592 GH31_glucosidase_KIAA1 52.9 28 0.0006 38.0 6.1 68 52-122 25-96 (303)
121 TIGR02102 pullulan_Gpos pullul 52.7 22 0.00047 45.6 5.9 21 96-116 555-575 (1111)
122 COG3589 Uncharacterized conser 51.9 29 0.00062 38.5 5.8 73 45-124 4-77 (360)
123 PRK14507 putative bifunctional 51.4 27 0.00058 46.6 6.4 60 55-118 756-829 (1693)
124 PRK08673 3-deoxy-7-phosphohept 51.3 44 0.00095 37.3 7.3 81 27-116 81-164 (335)
125 PF08531 Bac_rhamnosid_N: Alph 49.0 16 0.00036 36.4 3.3 23 646-668 7-29 (172)
126 smart00518 AP2Ec AP endonuclea 48.5 1.3E+02 0.0027 31.7 10.1 92 59-180 12-104 (273)
127 TIGR02103 pullul_strch alpha-1 47.0 31 0.00068 43.3 5.9 21 96-116 404-424 (898)
128 cd06598 GH31_transferase_CtsZ 46.2 35 0.00076 37.4 5.6 67 55-121 22-95 (317)
129 TIGR00676 fadh2 5,10-methylene 46.1 77 0.0017 34.0 8.1 110 42-165 125-247 (272)
130 cd06599 GH31_glycosidase_Aec37 45.1 41 0.0009 36.9 6.0 65 57-121 29-98 (317)
131 cd06545 GH18_3CO4_chitinase Th 44.9 94 0.002 32.7 8.4 114 66-211 18-132 (253)
132 cd06602 GH31_MGAM_SI_GAA This 44.8 33 0.00072 38.0 5.2 74 49-123 13-93 (339)
133 cd06603 GH31_GANC_GANAB_alpha 44.5 34 0.00073 37.9 5.2 74 49-123 13-91 (339)
134 PF01261 AP_endonuc_2: Xylose 43.9 1.3E+02 0.0029 29.5 9.0 103 58-188 28-137 (213)
135 PF07691 PA14: PA14 domain; I 43.2 1.1E+02 0.0024 28.6 7.8 71 481-559 47-123 (145)
136 cd06600 GH31_MGAM-like This fa 41.9 38 0.00082 37.2 5.0 73 49-122 13-90 (317)
137 cd06601 GH31_lyase_GLase GLase 40.7 1.2E+02 0.0027 33.6 8.8 72 49-121 13-89 (332)
138 cd06418 GH25_BacA-like BacA is 39.9 1.1E+02 0.0025 31.7 7.9 91 54-166 49-140 (212)
139 PLN03059 beta-galactosidase; P 39.7 1E+02 0.0022 38.5 8.5 43 626-669 468-518 (840)
140 COG1306 Uncharacterized conser 39.7 60 0.0013 35.6 5.8 59 55-116 75-144 (400)
141 PRK00042 tpiA triosephosphate 39.0 55 0.0012 35.0 5.5 50 62-117 78-127 (250)
142 PF02228 Gag_p19: Major core p 38.9 13 0.00028 32.6 0.6 37 55-108 20-56 (92)
143 cd06564 GH20_DspB_LnbB-like Gl 38.7 85 0.0018 34.5 7.2 145 49-213 11-195 (326)
144 cd06597 GH31_transferase_CtsY 38.0 57 0.0012 36.3 5.7 73 49-121 13-110 (340)
145 PLN02877 alpha-amylase/limit d 37.2 59 0.0013 41.1 6.1 21 96-116 466-486 (970)
146 cd06547 GH85_ENGase Endo-beta- 36.8 47 0.001 37.0 4.8 114 72-217 31-147 (339)
147 cd00311 TIM Triosephosphate is 36.7 65 0.0014 34.2 5.6 50 62-117 76-125 (242)
148 smart00481 POLIIIAc DNA polyme 36.7 1.1E+02 0.0024 25.2 5.9 45 57-114 15-59 (67)
149 PRK09989 hypothetical protein; 36.4 67 0.0014 33.7 5.7 43 58-114 16-58 (258)
150 cd06595 GH31_xylosidase_XylS-l 36.4 67 0.0015 34.8 5.8 71 49-119 14-97 (292)
151 COG5309 Exo-beta-1,3-glucanase 36.0 3.5E+02 0.0075 29.5 10.6 120 55-222 61-180 (305)
152 PRK09267 flavodoxin FldA; Vali 36.0 1.9E+02 0.004 28.3 8.5 74 37-113 44-117 (169)
153 cd06565 GH20_GcnA-like Glycosy 35.9 1.5E+02 0.0032 32.4 8.4 59 55-116 15-80 (301)
154 cd06604 GH31_glucosidase_II_Ma 35.5 60 0.0013 35.9 5.4 73 49-122 13-90 (339)
155 COG0366 AmyA Glycosidases [Car 34.8 60 0.0013 37.1 5.4 56 61-116 33-97 (505)
156 PLN03036 glutamine synthetase; 34.7 91 0.002 36.0 6.8 64 60-129 233-308 (432)
157 PF12876 Cellulase-like: Sugar 34.7 48 0.001 29.2 3.6 47 172-218 7-62 (88)
158 PF14701 hDGE_amylase: glucano 33.4 1.3E+02 0.0028 34.7 7.6 110 49-164 12-143 (423)
159 PRK14566 triosephosphate isome 32.9 1.1E+02 0.0024 32.9 6.6 50 62-117 87-136 (260)
160 COG1735 Php Predicted metal-de 32.9 4.9E+02 0.011 28.9 11.4 121 61-221 52-173 (316)
161 TIGR00419 tim triosephosphate 32.5 86 0.0019 32.5 5.6 45 62-116 73-117 (205)
162 COG1523 PulA Type II secretory 32.4 65 0.0014 39.4 5.3 55 62-116 205-285 (697)
163 cd02742 GH20_hexosaminidase Be 32.3 1.2E+02 0.0027 33.0 7.1 59 55-116 14-92 (303)
164 cd06416 GH25_Lys1-like Lys-1 i 32.2 70 0.0015 32.3 4.9 88 46-136 55-157 (196)
165 PLN02784 alpha-amylase 32.0 64 0.0014 40.3 5.2 56 60-116 524-588 (894)
166 COG1891 Uncharacterized protei 32.0 15 0.00033 37.1 -0.0 68 42-115 116-186 (235)
167 PF01055 Glyco_hydro_31: Glyco 31.3 93 0.002 35.5 6.2 69 56-125 42-112 (441)
168 PF04914 DltD_C: DltD C-termin 30.8 39 0.00085 32.5 2.6 52 96-166 36-88 (130)
169 cd08560 GDPD_EcGlpQ_like_1 Gly 30.7 1.3E+02 0.0029 33.8 7.1 53 58-116 246-298 (356)
170 PF00120 Gln-synt_C: Glutamine 30.6 88 0.0019 33.2 5.5 59 57-120 69-139 (259)
171 PF08924 DUF1906: Domain of un 30.4 1.2E+02 0.0025 29.4 5.7 88 55-166 36-128 (136)
172 cd04882 ACT_Bt0572_2 C-termina 30.1 1.1E+02 0.0023 24.4 4.7 55 56-112 10-64 (65)
173 TIGR00433 bioB biotin syntheta 29.8 76 0.0016 33.9 4.9 52 60-114 123-176 (296)
174 KOG4039 Serine/threonine kinas 29.5 60 0.0013 33.2 3.7 69 50-122 102-172 (238)
175 PF07755 DUF1611: Protein of u 29.4 40 0.00087 37.0 2.6 116 41-221 34-151 (301)
176 PRK12331 oxaloacetate decarbox 28.8 1.1E+02 0.0025 35.4 6.3 56 49-116 88-143 (448)
177 PRK09856 fructoselysine 3-epim 28.7 55 0.0012 34.5 3.5 55 58-116 91-149 (275)
178 PRK12858 tagatose 1,6-diphosph 28.7 67 0.0014 35.9 4.3 62 53-116 102-163 (340)
179 PF01120 Alpha_L_fucos: Alpha- 28.4 8.5E+02 0.018 27.0 17.8 55 267-346 289-343 (346)
180 KOG0259 Tyrosine aminotransfer 28.3 84 0.0018 35.7 4.9 95 14-114 141-237 (447)
181 smart00854 PGA_cap Bacterial c 28.2 6.2E+02 0.013 26.3 11.3 45 60-113 63-107 (239)
182 PRK10076 pyruvate formate lyas 28.0 2.5E+02 0.0054 29.2 8.1 124 57-214 54-209 (213)
183 PLN02429 triosephosphate isome 27.0 1.1E+02 0.0024 33.8 5.5 46 62-117 139-188 (315)
184 PRK15492 triosephosphate isome 26.7 1.2E+02 0.0026 32.6 5.7 50 62-117 86-135 (260)
185 TIGR01698 PUNP purine nucleoti 26.4 76 0.0016 33.7 4.0 41 36-76 47-88 (237)
186 PRK14565 triosephosphate isome 26.1 1.2E+02 0.0027 32.1 5.5 50 62-117 77-126 (237)
187 TIGR02455 TreS_stutzeri trehal 25.8 1.6E+02 0.0034 35.9 6.8 71 63-133 80-175 (688)
188 PLN02561 triosephosphate isome 25.4 1.3E+02 0.0028 32.3 5.5 50 62-117 80-129 (253)
189 PRK05265 pyridoxine 5'-phospha 25.0 1.1E+02 0.0024 32.6 4.8 47 58-122 114-161 (239)
190 PTZ00333 triosephosphate isome 25.0 1.4E+02 0.003 32.1 5.7 50 62-117 81-130 (255)
191 KOG1065 Maltase glucoamylase a 24.9 1.1E+02 0.0024 37.9 5.4 64 59-125 313-380 (805)
192 PF14307 Glyco_tran_WbsX: Glyc 24.9 87 0.0019 34.8 4.4 43 31-76 150-194 (345)
193 COG0149 TpiA Triosephosphate i 24.8 1.4E+02 0.003 32.1 5.5 50 62-117 80-129 (251)
194 PTZ00372 endonuclease 4-like p 24.8 2.7E+02 0.0059 32.1 8.3 115 37-183 153-275 (413)
195 PF12733 Cadherin-like: Cadher 24.5 1.6E+02 0.0034 25.5 5.1 45 503-556 27-72 (88)
196 PRK08645 bifunctional homocyst 24.5 2E+02 0.0042 34.8 7.5 111 38-164 459-578 (612)
197 cd00537 MTHFR Methylenetetrahy 24.4 1.5E+02 0.0032 31.7 5.8 90 62-165 152-250 (274)
198 COG5520 O-Glycosyl hydrolase [ 24.4 6.5E+02 0.014 28.6 10.7 112 68-209 77-204 (433)
199 cd00003 PNPsynthase Pyridoxine 24.4 1E+02 0.0023 32.6 4.5 49 57-123 110-159 (234)
200 cd01299 Met_dep_hydrolase_A Me 24.0 1.2E+02 0.0026 32.9 5.2 60 56-116 119-180 (342)
201 PRK13209 L-xylulose 5-phosphat 24.0 2.4E+02 0.0052 29.8 7.4 102 55-186 55-161 (283)
202 PRK09997 hydroxypyruvate isome 23.8 78 0.0017 33.2 3.6 59 58-116 86-144 (258)
203 KOG0622 Ornithine decarboxylas 23.8 1E+02 0.0023 35.2 4.6 67 54-130 190-257 (448)
204 PRK14567 triosephosphate isome 23.7 1.5E+02 0.0032 31.8 5.6 50 62-117 77-126 (253)
205 COG2884 FtsE Predicted ATPase 23.5 58 0.0013 33.8 2.4 18 652-669 54-71 (223)
206 PRK13210 putative L-xylulose 5 23.4 87 0.0019 33.0 3.9 60 57-117 94-154 (284)
207 TIGR01361 DAHP_synth_Bsub phos 23.1 1.3E+02 0.0028 32.3 5.0 81 27-116 13-96 (260)
208 COG0156 BioF 7-keto-8-aminopel 22.5 52 0.0011 37.4 2.0 68 36-115 136-207 (388)
209 cd04883 ACT_AcuB C-terminal AC 22.4 2.9E+02 0.0062 22.5 6.1 56 57-113 13-69 (72)
210 KOG0683 Glutamine synthetase [ 22.3 1E+02 0.0022 34.6 4.1 46 82-128 201-258 (380)
211 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.3 1.8E+02 0.0039 31.3 6.0 49 54-114 88-136 (275)
212 KOG3833 Uncharacterized conser 22.2 92 0.002 34.4 3.7 53 58-116 444-499 (505)
213 cd06563 GH20_chitobiase-like T 22.1 3.4E+02 0.0074 30.3 8.4 59 55-116 16-106 (357)
214 COG2179 Predicted hydrolase of 22.1 1.6E+02 0.0035 29.8 5.1 44 62-114 19-67 (175)
215 cd07381 MPP_CapA CapA and rela 21.8 8.9E+02 0.019 25.0 11.7 127 60-214 67-210 (239)
216 KOG3625 Alpha amylase [Carbohy 21.6 72 0.0016 39.9 3.0 76 55-139 140-235 (1521)
217 PRK10658 putative alpha-glucos 21.5 1.8E+02 0.004 35.4 6.5 64 58-122 284-351 (665)
218 cd06594 GH31_glucosidase_YihQ 21.4 2.7E+02 0.0059 30.6 7.3 68 55-122 21-97 (317)
219 PRK10966 exonuclease subunit S 21.2 4.4E+02 0.0096 30.1 9.2 63 42-116 42-108 (407)
220 PRK09250 fructose-bisphosphate 20.8 1E+02 0.0023 34.5 3.9 48 63-116 152-199 (348)
221 KOG0805 Carbon-nitrogen hydrol 20.7 3.1E+02 0.0068 29.5 7.0 78 97-184 38-122 (337)
222 PRK14040 oxaloacetate decarbox 20.6 1.4E+02 0.0031 35.8 5.3 53 49-113 89-141 (593)
223 PF00728 Glyco_hydro_20: Glyco 20.6 1.2E+02 0.0026 33.1 4.4 59 55-116 16-93 (351)
224 cd06415 GH25_Cpl1-like Cpl-1 l 20.5 3.5E+02 0.0076 27.3 7.5 43 96-138 108-157 (196)
225 TIGR02427 protocat_pcaD 3-oxoa 20.5 1.6E+02 0.0034 28.9 4.9 82 39-132 12-94 (251)
226 TIGR00587 nfo apurinic endonuc 20.2 4.7E+02 0.01 27.9 8.7 84 59-164 13-98 (274)
227 COG1082 IolE Sugar phosphate i 20.2 9.6E+02 0.021 24.7 11.5 51 55-114 13-63 (274)
228 TIGR00559 pdxJ pyridoxine 5'-p 20.2 1.4E+02 0.0031 31.6 4.5 48 57-122 110-158 (237)
229 PRK14582 pgaB outer membrane N 20.2 1.4E+02 0.003 36.5 5.1 61 54-114 69-137 (671)
230 PLN02692 alpha-galactosidase 20.1 2.6E+02 0.0057 32.2 6.9 120 1-122 1-149 (412)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=5.2e-189 Score=1624.73 Aligned_cols=713 Identities=55% Similarity=1.045 Sum_probs=661.8
Q ss_pred HHHhhhhcccccceEEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec
Q 004525 14 IFFSSSITYCFAGNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG 93 (747)
Q Consensus 14 ~~~~~~~~~~~~~~v~~~~~~f~idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~ 93 (747)
.++||+|+.....+|++|+++|+|||||++|+||||||||++|++|+|+|+||||+|||||+||||||+|||+||+|||+
T Consensus 16 ~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~ 95 (840)
T PLN03059 16 FLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFE 95 (840)
T ss_pred HHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeecc
Confidence 34788998777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccC
Q 004525 94 GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQG 173 (747)
Q Consensus 94 g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~g 173 (747)
|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|+++|+++++++++|
T Consensus 96 G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~G 175 (840)
T PLN03059 96 DRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQG 175 (840)
T ss_pred chHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CceEeecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCCCCccccCCCCccCccCCCCCCCCcEEee
Q 004525 174 GPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTPDPVINTCNSFYCDQFTPHSPSMPKIWTE 253 (747)
Q Consensus 174 GpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p~~P~~~~E 253 (747)
|||||+|||||||++...++.+|++||+||+++++++|++|||+||++.+++++++++|||.+|+.|.+..+.+|+||+|
T Consensus 176 GPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE 255 (840)
T PLN03059 176 GPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTE 255 (840)
T ss_pred CcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEec
Confidence 99999999999999877777789999999999999999999999999988888999999999999898877779999999
Q ss_pred cCCcccCccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhHHH
Q 004525 254 NWPGWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHL 333 (747)
Q Consensus 254 ~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~tSYDy~Apl~E~G~~~tpky~~l 333 (747)
||+|||++||++++.|+++|++.+++++|++|+|++||||||||||||+|+|+++++|||||||||+|+|++++|||.+|
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~l 335 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHL 335 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999966899999
Q ss_pred HHHHHHHhhhhcccccCCccccCCCCCccceeeccCCcceeeeccccCCCCcceEEEeceeeecCCceeeecCCCcceee
Q 004525 334 KELHGAIKLCEHALLNGERSNLSLGSSQEADVYADSSGACAAFLANMDDKNDKTVVFRNVSYHLPAWSVSILPDCKKVVF 413 (747)
Q Consensus 334 r~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~sv~il~~~~~~~~ 413 (747)
|++|.+++.++++|+..+|....+|+.+++.+|...+ .|++|+.|++.+.+.+|+|+|++|.||+|||+|||||+.++|
T Consensus 336 r~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lf 414 (840)
T PLN03059 336 RDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVF 414 (840)
T ss_pred HHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceee
Confidence 9999999999988888888788899999999998766 799999999999999999999999999999999999999999
Q ss_pred cccccccccceeecccCCCCCCCCCCCCCCCCccccccccc-ccccCCCccccccchhhccCCCCCCcEEEEEEeeecCc
Q 004525 414 NTANVRAQSSTVEMVPENLQPSEASPDNGSKGLKWQVFKEI-AGIWGEADFVKSGFVDHINTTKDTTDYLWYTTSIIVNE 492 (747)
Q Consensus 414 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Yrt~i~~~~ 492 (747)
+|+++..+.+.+++.+ ....+.|+++.|+ .+...+.+++...++||+++|+|.+||+||||+|....
T Consensus 415 nta~v~~q~~~~~~~~------------~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 415 NTARLGAQSSQMKMNP------------VGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred eccccccccceeeccc------------ccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 9999988876554322 1134689999998 45445567778888999999999999999999998876
Q ss_pred chhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccEEEEEEeccCccccccCccccccc
Q 004525 493 NEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQNAGPFYEWVGAG 572 (747)
Q Consensus 493 ~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kG 572 (747)
++...+++.+++|+|.+++|++||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|+++.||
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 65445667889999999999999999999999999887777788888888999999999999999999999999999999
Q ss_pred ce-EEEecCccCccccCccCceEEecccccccccccCCCCCCCcccccCCCCCCCCCceEEEEEEECCCCCCCeEEeccC
Q 004525 573 IT-SVKITGFNSGTLDLSTYSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLTWYKAVVKQPPGDEPIGLDMLK 651 (747)
Q Consensus 573 I~-~V~l~g~~~~~~dl~~~~W~~~~~L~ge~~~~~~p~~~~~~~w~~~~~~~~~~~~~wYk~~F~~~~~~d~~~Ld~~g 651 (747)
|+ +|+|+++++++.||+++.|.|+++|+||.++++.++...+++|.+.+..+..+|++|||++|++|.+.|||||||+|
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~g 642 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSS 642 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEeccc
Confidence 99 99999988888999988999999999999999987655678997765444566799999999999999999999999
Q ss_pred CceEEEEEcCccccccccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecCCC
Q 004525 652 MGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKGGD 731 (747)
Q Consensus 652 ~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhVP~~~Lk~g~N~Ivv~E~~g~~ 731 (747)
||||+|||||+||||||+. . .+.+|| +.|+|+|+|+++||+|||+||||||||||++|||+|+|+||||||+|++
T Consensus 643 mGKG~aWVNG~nIGRYW~~-~---a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~ 717 (840)
T PLN03059 643 MGKGQIWINGQSIGRHWPA-Y---TAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGN 717 (840)
T ss_pred CCCeeEEECCccccccccc-c---cccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCC
Confidence 9999999999999999985 2 367899 8899999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeccC
Q 004525 732 PTKITFSIRKISG 744 (747)
Q Consensus 732 p~~i~l~~~~~~~ 744 (747)
|+.|+|+++++++
T Consensus 718 p~~I~~~~~~~~~ 730 (840)
T PLN03059 718 PAGISLVKRTTDS 730 (840)
T ss_pred CCceEEEEeecCc
Confidence 9999999998765
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-150 Score=1253.18 Aligned_cols=622 Identities=54% Similarity=1.001 Sum_probs=573.1
Q ss_pred cccceEEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHH
Q 004525 23 CFAGNVTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFI 102 (747)
Q Consensus 23 ~~~~~v~~~~~~f~idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl 102 (747)
|+.+.|++|+++|++||+|++++||+|||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||
T Consensus 15 ~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFi 94 (649)
T KOG0496|consen 15 GSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFI 94 (649)
T ss_pred cceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccc
Q 004525 103 KIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVE 182 (747)
Q Consensus 103 ~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIE 182 (747)
++|++.||+|+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++.+| +|+++|||||||+|||
T Consensus 95 kl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIE 172 (649)
T KOG0496|consen 95 KLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIE 172 (649)
T ss_pred HHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred ccccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCCCCccccCCCCcc-CccC-CCCCCCCcEEeecCCcccC
Q 004525 183 NEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTPDPVINTCNSFYC-DQFT-PHSPSMPKIWTENWPGWFK 260 (747)
Q Consensus 183 NEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~Gwf~ 260 (747)
||||.+...|++.++.|++|-+.|+...+.+|||+||.+.++|+.++++|||.+| +.|. +++|++|+||||+|+|||+
T Consensus 173 NEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 173 NEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFT 252 (649)
T ss_pred chhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhh
Confidence 9999988788888999999999999999999999999999999999999999999 9998 8999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 004525 261 TFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAI 340 (747)
Q Consensus 261 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~tSYDy~Apl~E~G~~~tpky~~lr~l~~~~ 340 (747)
+||++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.|+|.+|..+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~ 329 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSY 329 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhh
Confidence 999999999999999999999999999999999999999999998 99999999999999 999999999999999999
Q ss_pred hhhhcccccCCccccCCCCCccceeeccCCcceeeeccccCCCCcceEEEeceeeecCCceeeecCCCcceeeccccccc
Q 004525 341 KLCEHALLNGERSNLSLGSSQEADVYADSSGACAAFLANMDDKNDKTVVFRNVSYHLPAWSVSILPDCKKVVFNTANVRA 420 (747)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~sv~il~~~~~~~~~t~~v~~ 420 (747)
+.+++.+..+++....+++. .+.|.+|+.|++......+.|++..+.+|+|+|+|++||++++|+|+++..
T Consensus 330 d~~ep~lv~gd~~~~kyg~~---------~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~ 400 (649)
T KOG0496|consen 330 DYCEPALVAGDITTAKYGNL---------REACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA 400 (649)
T ss_pred hhcCccccccCcccccccch---------hhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc
Confidence 99998887776554444433 345999999999999999999999999999999999999999999988654
Q ss_pred ccceeecccCCCCCCCCCCCCCCCCcccccccccccccCCCccccccchhhccCCCCCCcEEEEEEeeecCcchhhhcCC
Q 004525 421 QSSTVEMVPENLQPSEASPDNGSKGLKWQVFKEIAGIWGEADFVKSGFVDHINTTKDTTDYLWYTTSIIVNENEEFLKNG 500 (747)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~~ 500 (747)
+ |....|+ .++|..+| .+||++|++.++.+..+
T Consensus 401 ~--------------------------~~~~~e~------------~~~~~~~~---~~~~ll~~~~~t~d~sd------ 433 (649)
T KOG0496|consen 401 Q--------------------------WISFTEP------------IPSEAVGQ---SFGGLLEQTNLTKDKSD------ 433 (649)
T ss_pred c--------------------------cccccCC------------CccccccC---cceEEEEEEeeccccCC------
Confidence 2 3223333 34666666 57899999999876544
Q ss_pred CCCeEEec-ccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccEEEEEEeccCccccccCcccccccce-EEEe
Q 004525 501 SRPVLLIE-SKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQNAGPFYEWVGAGIT-SVKI 578 (747)
Q Consensus 501 ~~~~L~i~-~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~-~V~l 578 (747)
.+.|+|. +++|++||||||+++|+++++.....+++..++.|..|.|+|+|||||+||+||| +++++.|||+ +|+|
T Consensus 434 -~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l 511 (649)
T KOG0496|consen 434 -TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYL 511 (649)
T ss_pred -CceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEE
Confidence 2568888 9999999999999999999987776777888888999999999999999999999 8899999999 9999
Q ss_pred cCccCccccCccCceEEecccccccccccCCCCCCCcccccCCCCCCCCCceEEEEEEECCCCCCCeEEeccCCceEEEE
Q 004525 579 TGFNSGTLDLSTYSWTYKIGLQGEHLGIYNPGYRNNINWVSTMEPPKNQPLTWYKAVVKQPPGDEPIGLDMLKMGKGLAW 658 (747)
Q Consensus 579 ~g~~~~~~dl~~~~W~~~~~L~ge~~~~~~p~~~~~~~w~~~~~~~~~~~~~wYk~~F~~~~~~d~~~Ld~~g~gKG~vw 658 (747)
.|. +|+++++|.|+++|.+|.+..|.++..++++|......+..+|.+||+ +|++|++.+|++|||.|||||+||
T Consensus 512 ~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vw 586 (649)
T KOG0496|consen 512 NGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVW 586 (649)
T ss_pred eee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEE
Confidence 886 568888999999999999999999888889999876555457899999 999999999999999999999999
Q ss_pred EcCccccccccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecCCCCcceEEE
Q 004525 659 LNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKGGDPTKITFS 738 (747)
Q Consensus 659 VNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhVP~~~Lk~g~N~Ivv~E~~g~~p~~i~l~ 738 (747)
|||+||||||++ .|||++| |||++|||++.|.||||||+|++|..|+++
T Consensus 587 VNG~niGRYW~~------------------------------~G~Q~~y-hvPr~~Lk~~~N~lvvfEee~~~p~~i~~~ 635 (649)
T KOG0496|consen 587 VNGQNIGRYWPS------------------------------FGPQRTY-HVPRSWLKPSGNLLVVFEEEGGDPNGISFV 635 (649)
T ss_pred ECCcccccccCC------------------------------CCCceEE-ECcHHHhCcCCceEEEEEeccCCCccceEE
Confidence 999999999996 3896664 599999999999999999999999999999
Q ss_pred EEecc
Q 004525 739 IRKIS 743 (747)
Q Consensus 739 ~~~~~ 743 (747)
++.+.
T Consensus 636 ~~~~~ 640 (649)
T KOG0496|consen 636 TRPVL 640 (649)
T ss_pred EeEee
Confidence 99876
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=3.2e-88 Score=730.01 Aligned_cols=297 Identities=39% Similarity=0.723 Sum_probs=228.8
Q ss_pred cEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 34 SLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 34 ~f~idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
+|+|||||++++|||+||||+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccC
Q 004525 114 LRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYG 193 (747)
Q Consensus 114 lr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g 193 (747)
|||||||||||++||+|.||.+++++++||+|+.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 5789999999999999999943
Q ss_pred cccHHHHHHHHHHHHhcCCc-cceEEecccC--------CCCCccccCCCCccCc-----c---CCCCCCCCcEEeecCC
Q 004525 194 EGGKRYALWAAKMAVAQNIG-VPWIMCQQFD--------TPDPVINTCNSFYCDQ-----F---TPHSPSMPKIWTENWP 256 (747)
Q Consensus 194 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~~--------~~~~~~~~~ng~~~~~-----~---~~~~p~~P~~~~E~~~ 256 (747)
.++++||+.|++++++.+++ ++.++++... .++..+.+++++.|.. | ...+|++|.|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37999999999999999998 6666665421 2222233344444421 1 2456889999999999
Q ss_pred cccCccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcc----cccCCCCCCCCCCCCCCCchhHH
Q 004525 257 GWFKTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFI----TTSYDYEAPIDEYGLPRNPKWGH 332 (747)
Q Consensus 257 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~----~tSYDy~Apl~E~G~~~tpky~~ 332 (747)
|||++||++++.+++++++..+++++++|. ++||||||||||||+++|++.. +|||||+|||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~-~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGN-SLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCS-EEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhc-ccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 999999999999999999999999999995 5899999999999999986554 4999999999999998 699999
Q ss_pred HHHHHHH
Q 004525 333 LKELHGA 339 (747)
Q Consensus 333 lr~l~~~ 339 (747)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=354.08 Aligned_cols=289 Identities=21% Similarity=0.275 Sum_probs=211.2
Q ss_pred EEEeCCcEEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEE-ceecCccCCCCCeeeecccchHHHHHHHHH
Q 004525 28 VTYDSRSLIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGKYYFGGRFNLVKFIKIIQ 106 (747)
Q Consensus 28 v~~~~~~f~idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 106 (747)
|.++...+++||+|++++||.+||+|+|++.|.|||++||++|+|+|++ |+.|++|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCcccCcCCCeEec---------cCChhHHHHHHHHHHHHHHHHhhcccccccCCce
Q 004525 107 QARMYMILRIGP-FVAAEYNYGGIPVWLHYIPGTVFR---------NDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPI 176 (747)
Q Consensus 107 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~~~~R---------t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 176 (747)
+.||+||||||| ..|.+|..+++|+||..++.-..| .+++-|++++++.+..|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876542222 456778888887555554443 5899999
Q ss_pred EeecccccccccccccCcccHHHHHHHHHHHHhc-CCccceEEeccc-CCC-CCccccCC-----CCcc--CccCCCCCC
Q 004525 177 ILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQ-NIGVPWIMCQQF-DTP-DPVINTCN-----SFYC--DQFTPHSPS 246 (747)
Q Consensus 177 I~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~-g~~vP~~~~~~~-~~~-~~~~~~~n-----g~~~--~~~~~~~p~ 246 (747)
|+||++||||++.+.+..|.+.+..||++.+-.. .++-+|=+..-+ +.. ...|.+-+ +... -++..+...
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965555678899999999888421 222232211100 000 00011111 1110 022222223
Q ss_pred C----CcEEeecCCccc-CccCCCCCCCC-hHHHHHHHHHHHHcCCeeeeeeeeccCCCCC------CCCCCC---c---
Q 004525 247 M----PKIWTENWPGWF-KTFGGRDPHRP-SEDIAFSVARFFQKGGSVHNYYMYHGGTNFG------RTAGGP---F--- 308 (747)
Q Consensus 247 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~~---~--- 308 (747)
+ +....|.+-+|| +.|..+.-... .+.-+..+++.|..... -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 556667777888 66665443333 23334455566666555 6999999999999 666643 2
Q ss_pred ----ccccCCCCCCCCCCCCC
Q 004525 309 ----ITTSYDYEAPIDEYGLP 325 (747)
Q Consensus 309 ----~~tSYDy~Apl~E~G~~ 325 (747)
..++|++.+.+.+.|.+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 36899999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=4.9e-21 Score=211.88 Aligned_cols=263 Identities=17% Similarity=0.254 Sum_probs=160.1
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEE-ceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 004525 49 IHYPRSVPGMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYG 127 (747)
Q Consensus 49 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G 127 (747)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677889999999999999999999997 57799999999999999 899999999999999999985 57
Q ss_pred CCCcccCc-CCCeEe----------------ccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccccccc
Q 004525 128 GIPVWLHY-IPGTVF----------------RNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYES 190 (747)
Q Consensus 128 G~P~WL~~-~p~~~~----------------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~ 190 (747)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++ ..||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCc-
Confidence 79999975 676532 1357889999999999999888754 4799999999998742
Q ss_pred ccC-cccHHHHHHHHHHHHhc-------CCc-------------cceEEeccc------C--------------------
Q 004525 191 FYG-EGGKRYALWAAKMAVAQ-------NIG-------------VPWIMCQQF------D-------------------- 223 (747)
Q Consensus 191 ~~g-~~~~~y~~~l~~~~~~~-------g~~-------------vP~~~~~~~------~-------------------- 223 (747)
+|+ .+.++|.+||+++|... |.. .|..+.... |
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 46788999999988621 111 122111000 0
Q ss_pred ---CCCCccccCC--CC------------ccC-----cc----------------------CCCCCCCCcEEeecCCccc
Q 004525 224 ---TPDPVINTCN--SF------------YCD-----QF----------------------TPHSPSMPKIWTENWPGWF 259 (747)
Q Consensus 224 ---~~~~~~~~~n--g~------------~~~-----~~----------------------~~~~p~~P~~~~E~~~Gwf 259 (747)
.|+- .-+.| +. .+| .+ ....+.+|.+++|..+| -
T Consensus 223 r~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 0110 00000 00 000 00 01246789999999998 6
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 004525 260 KTFGGRDPHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGA 339 (747)
Q Consensus 260 ~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~tSYDy~Apl~E~G~~~tpky~~lr~l~~~ 339 (747)
..|+.......+..+....-..++.|+..+.|+-+ ....+|.=.. ..+-|+-+|...+++|.+++++...
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGRE 370 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHH
Confidence 66766555555666665555678999998877755 3333342211 1346778893358899999999877
Q ss_pred Hhh
Q 004525 340 IKL 342 (747)
Q Consensus 340 ~~~ 342 (747)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 653
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.30 E-value=7.2e-11 Score=126.93 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=125.1
Q ss_pred EEEeCCcEEECCEEeEEEEEEeeCCC------CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHH
Q 004525 28 VTYDSRSLIINGRRELIISAAIHYPR------SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKF 101 (747)
Q Consensus 28 v~~~~~~f~idGk~~~~~sG~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 101 (747)
|++.++.|+|||||+++-+...|... .+++.|+.+|++||+||+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67899999999999999999999643 46788999999999999999999 777654 689
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 004525 102 IKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQV 181 (747)
Q Consensus 102 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 181 (747)
+++|.++||.|+.-+.=.-++.|..-|. ......|+.+.+.+.+-+++++.+.+.|| .||||=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999997652101122221110 12456789999988888888888877554 7999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHHhcCCccceEEeccc--CCCCCcc-ccCCCCcc-----CccC----C--CCCCC
Q 004525 182 ENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQF--DTPDPVI-NTCNSFYC-----DQFT----P--HSPSM 247 (747)
Q Consensus 182 ENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~--~~~~~~~-~~~ng~~~-----~~~~----~--~~p~~ 247 (747)
-||-. ...+++.|.+++++..-+-|....... ...+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99993 356788999999988777776544331 0111111 11111111 0111 1 35789
Q ss_pred CcEEeecCCcccC
Q 004525 248 PKIWTENWPGWFK 260 (747)
Q Consensus 248 P~~~~E~~~Gwf~ 260 (747)
|.+.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.01 E-value=4.7e-10 Score=103.99 Aligned_cols=69 Identities=25% Similarity=0.574 Sum_probs=51.1
Q ss_pred CCCceEEEEEEECCCCCCCeE-Eec--cCCceEEEEEcCccccccccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCC
Q 004525 626 NQPLTWYKAVVKQPPGDEPIG-LDM--LKMGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGE 702 (747)
Q Consensus 626 ~~~~~wYk~~F~~~~~~d~~~-Ld~--~g~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~g 702 (747)
..+..|||++|+....+..+. |.. ....+++|||||++|||||+. +|
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~------------------------------~g 82 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG------------------------------IG 82 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT------------------------------TE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC------------------------------CC
Confidence 457899999996322111233 333 457899999999999999964 58
Q ss_pred CceeeeecCcccccCCccEEEEE
Q 004525 703 PSQRWYHIPRSWFKPSENILVIF 725 (747)
Q Consensus 703 PqqtlYhVP~~~Lk~g~N~Ivv~ 725 (747)
||++++ ||.++|+.++|.|+|+
T Consensus 83 ~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 83 PQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp CCEEEE-E-BTTBTTCEEEEEEE
T ss_pred ccEEEE-eCceeecCCCEEEEEE
Confidence 999988 9999999876666565
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.96 E-value=1.1e-08 Score=120.54 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=111.9
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCCC------CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHH
Q 004525 27 NVTYDSRSLIINGRRELIISAAIHYPR------SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVK 100 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 100 (747)
+|++++..|+|||||+++-+...|... ++++.|+.+++.||++|+|+|++ .|-|.+ .+
T Consensus 277 ~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~~ 340 (604)
T PRK10150 277 SVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------EE 340 (604)
T ss_pred EEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------HH
Confidence 678889999999999999999888532 46677999999999999999999 566643 58
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCcccC-------c-CCCeEeccCChhHHHHHHHHHHHHHHHHhhccccccc
Q 004525 101 FIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH-------Y-IPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQ 172 (747)
Q Consensus 101 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~-------~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~ 172 (747)
|+++|.++||+|+-... .-|+..|+. + .+.......+|.+.++..+-+++++.+.+ |
T Consensus 341 ~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-------N 405 (604)
T PRK10150 341 MLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK-------N 405 (604)
T ss_pred HHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------C
Confidence 99999999999997652 112222221 1 11111123456677766666666665554 5
Q ss_pred CCceEeecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 004525 173 GGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMC 219 (747)
Q Consensus 173 gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~ 219 (747)
...||||-|-||.... ......|++.|.+.+++..-+-|....
T Consensus 406 HPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 406 HPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 5689999999997532 113457788888999988766665543
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.86 E-value=3.5e-08 Score=103.62 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=109.1
Q ss_pred CCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccC-CCCCe-eeecccchHHHHHHHHHHcCcEEEEe
Q 004525 38 NGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHE-LSPGK-YYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 38 dGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
+|+++.+.+-+.|..... .-++.+++||++|+|+||+.|.|...+ +.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~~~--~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNPS--ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGGG--SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCCC--CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 799999999999932212 779999999999999999999995544 67764 66666679999999999999999986
Q ss_pred cCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccc--cC
Q 004525 116 IGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESF--YG 193 (747)
Q Consensus 116 ~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~--~g 193 (747)
+=. .|.|...... -...+...+....+++.|+++++. ..+|++++|=||....... +.
T Consensus 82 ~h~----------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LHN----------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EEE----------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ecc----------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 521 2777432111 012222334445566666666653 3479999999999864211 00
Q ss_pred ----cccHHHHHHHHHHHHhcCCccceEEec
Q 004525 194 ----EGGKRYALWAAKMAVAQNIGVPWIMCQ 220 (747)
Q Consensus 194 ----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 220 (747)
..-.++++.+.+.+|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 012456666677778888777666543
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.85 E-value=4.3e-08 Score=121.43 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=118.9
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCCC------CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHH
Q 004525 27 NVTYDSRSLIINGRRELIISAAIHYPR------SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVK 100 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 100 (747)
+|+++++.|+|||||+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|.. .+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------PR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 577888999999999999999888432 36788999999999999999999 465543 58
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 004525 101 FIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQ 180 (747)
Q Consensus 101 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (747)
|+++|.++||+|+-.. |..|..|.. .. +...-+++|.+.++..+=+++|+.+.+ |...||||=
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~-------~~--~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFAN-------VG--DISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccc-------cc--ccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEE
Confidence 9999999999999765 322222211 00 011124677776654444555555544 556899999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHhcCCccceEEecccCCC--CCccccCCCCc--cCccCCCCCCCCcEEeecC
Q 004525 181 VENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMCQQFDTP--DPVINTCNSFY--CDQFTPHSPSMPKIWTENW 255 (747)
Q Consensus 181 IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~--~~~~~~~ng~~--~~~~~~~~p~~P~~~~E~~ 255 (747)
+-||-+. | . .++.+.+.+++..-.-|+ +..+.... -+++...=+.. +..+....+++|.+.+|+-
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999763 3 2 236777888877666554 33321111 11111100000 0122233457999999984
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.84 E-value=6e-08 Score=120.07 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=105.0
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCC------CCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHH
Q 004525 27 NVTYDSRSLIINGRRELIISAAIHYP------RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVK 100 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG~~hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 100 (747)
+|++++..|+|||||+++-+...|-. +++++.++++|+.||++|+|+|++ .|-|.. .+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------PL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 56778889999999999999998842 357888999999999999999999 465543 58
Q ss_pred HHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 004525 101 FIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQ 180 (747)
Q Consensus 101 fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (747)
|+++|.++||+|+-... . | ..|-.|. .. -.+||.|.+++.+=+++++.+.+ |...||||=
T Consensus 399 fydlcDe~GilV~dE~~-~---e-~hg~~~~---~~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E-THGMVPM---NR-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c-ccCCccc---cC-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEe
Confidence 99999999999997752 1 1 1111121 00 13578887766555555555554 556899999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 004525 181 VENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVPWIMC 219 (747)
Q Consensus 181 IENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP~~~~ 219 (747)
+-||-+. + ...+.+.+.+++..-.-|....
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999763 2 1245666777776656665443
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=7.7e-08 Score=115.47 Aligned_cols=135 Identities=18% Similarity=0.225 Sum_probs=104.5
Q ss_pred ceEEEeCCcEEECCEEeEEEEEEeeCCC-----C-CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHH
Q 004525 26 GNVTYDSRSLIINGRRELIISAAIHYPR-----S-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLV 99 (747)
Q Consensus 26 ~~v~~~~~~f~idGk~~~~~sG~~hy~r-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 99 (747)
..|++++..|+|||||+++-|..-|.+- . ..+.-+++|+.||++|+|+|+| | |-|+. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCCC-----------H
Confidence 3689999999999999999999999654 3 3444899999999999999999 3 77776 7
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEee
Q 004525 100 KFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILA 179 (747)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 179 (747)
.|++||.++||+||--+ ..||.. +| +|+.|++.+..=+++|+++.|.| ..||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knH-------PSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCC-------CcEEEE
Confidence 99999999999999876 223322 22 78899998888788887777655 479999
Q ss_pred cccccccccccccCcccHHHHHHHHHHH
Q 004525 180 QVENEYGYYESFYGEGGKRYALWAAKMA 207 (747)
Q Consensus 180 QIENEyg~~~~~~g~~~~~y~~~l~~~~ 207 (747)
=+.||-|. |+....-.+|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999874 433333345555443
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.65 E-value=1e-07 Score=88.46 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=58.9
Q ss_pred hhhccCCCCCCcEEEEEEeeecCcchhhhcCCCCCe-EEec-ccceEEEEEECCEEEEEEeCCCCCCCceeeeccc-cCC
Q 004525 469 VDHINTTKDTTDYLWYTTSIIVNENEEFLKNGSRPV-LLIE-SKGHALHAFANQELQGSASGNGTHPPFKYKNPIS-LKA 545 (747)
Q Consensus 469 ~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~-L~i~-~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~-l~~ 545 (747)
.+..+.+++++|++|||++|+..+.+ .... |.+. +.+++++|||||+++|+..+..+ ...+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 45555667789999999999764433 1233 4444 67999999999999999883322 2355665542 566
Q ss_pred CccEEEEEEeccCc
Q 004525 546 GKNEIALLSMTVGL 559 (747)
Q Consensus 546 g~~~L~ILven~Gr 559 (747)
++++|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 78899999999997
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.20 E-value=1.3e-05 Score=78.52 Aligned_cols=99 Identities=27% Similarity=0.355 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEEeeecCcchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCc-cEEEEE
Q 004525 475 TKDTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGK-NEIALL 553 (747)
Q Consensus 475 t~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~-~~L~IL 553 (747)
.....|+.|||++|+++... .+.+..|.+.++.+.+.|||||+++|...+... .+.+.+.-.|+.|. |+|.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEE
Confidence 35578999999999987542 245678999999999999999999999875543 34455444588887 999999
Q ss_pred EeccCccccccCc-ccccccce-EEEec
Q 004525 554 SMTVGLQNAGPFY-EWVGAGIT-SVKIT 579 (747)
Q Consensus 554 ven~Gr~NyG~~~-~~~~kGI~-~V~l~ 579 (747)
|.+.....+-+.+ .....||. +|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9965543220111 12457998 88873
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.00 E-value=1.7e-05 Score=83.69 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=87.3
Q ss_pred cCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHH
Q 004525 80 WNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLI 159 (747)
Q Consensus 80 Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l 159 (747)
|...||++|+|||+ .++++++.|+++||.|. ..+.+ |-. ..|.|+...+ .+..++++.+|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 89999999999999983 32222 433 6899987532 345678888999998
Q ss_pred HHHHhhcccccccCCceEeeccccccccccc------cc-CcccHHHHHHHHHHHHhcCCccceEEec
Q 004525 160 VDMMKREKLFASQGGPIILAQVENEYGYYES------FY-GEGGKRYALWAAKMAVAQNIGVPWIMCQ 220 (747)
Q Consensus 160 ~~~l~~~~~~~~~gGpII~~QIENEyg~~~~------~~-g~~~~~y~~~l~~~~~~~g~~vP~~~~~ 220 (747)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+++..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88875 45889999999543210 01 1134578888889999988888888875
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.82 E-value=0.00017 Score=77.80 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=84.7
Q ss_pred cceEEEeCCcEE--ECCEEeEEEEEEeeCCCC-----------CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeee
Q 004525 25 AGNVTYDSRSLI--INGRRELIISAAIHYPRS-----------VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYY 91 (747)
Q Consensus 25 ~~~v~~~~~~f~--idGk~~~~~sG~~hy~r~-----------~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d 91 (747)
-..|++.++.|. .+|++|+|.+-.+.+--. .++.|++++..||++|+|||++|- ..|.
T Consensus 8 ~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~----- 78 (314)
T PF03198_consen 8 VPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS----- 78 (314)
T ss_dssp S--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT-----
T ss_pred CCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC-----
Confidence 346888899998 799999999887765332 456799999999999999999973 2232
Q ss_pred ecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCCh--hHHHHHHHHHHHHHHHHhhcccc
Q 004525 92 FGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTE--PFKYHMQKFMTLIVDMMKREKLF 169 (747)
Q Consensus 92 F~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~--~y~~~~~~~~~~l~~~l~~~~~~ 169 (747)
.|=++++++.++.|+|||+-.+. |...+-..+| .|-...-.-+.+++..++.++
T Consensus 79 ----~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~-- 134 (314)
T PF03198_consen 79 ----KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD-- 134 (314)
T ss_dssp ----S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T--
T ss_pred ----CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC--
Confidence 37789999999999999998752 2222333445 454333333344556666543
Q ss_pred cccCCceEeeccccccccccccc--CcccHHHHHHHHHHHHhcCC-ccce
Q 004525 170 ASQGGPIILAQVENEYGYYESFY--GEGGKRYALWAAKMAVAQNI-GVPW 216 (747)
Q Consensus 170 ~~~gGpII~~QIENEyg~~~~~~--g~~~~~y~~~l~~~~~~~g~-~vP~ 216 (747)
+++++=+-||--.-...- ...-++..+-+|+-.++.+. .+|+
T Consensus 135 -----N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 -----NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -----TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -----ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 799999999986432100 01234555555665666665 4564
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.68 E-value=8.2e-05 Score=84.50 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+--= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7899988888999999999999999876541 2358999976
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466777777777788777764
No 18
>PLN02161 beta-amylase
Probab=97.53 E-value=0.00031 Score=79.51 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC-----C
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG-----G 128 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G-----G 128 (747)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ .-|+- +-| -
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~Ip 190 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGGIS 190 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccCcc
Confidence 34567899999999999999999999998 799999995 778899999999996 4554 33332 112 2
Q ss_pred CCcccCc----CCCeEeccC----ChhH----------------HHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 004525 129 IPVWLHY----IPGTVFRND----TEPF----------------KYHMQKFMTLIVDMMKREKLFASQGGPIILAQV 181 (747)
Q Consensus 129 ~P~WL~~----~p~~~~Rt~----d~~y----------------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 181 (747)
||.|+.+ +|+|.+... |+.| ++.-+.|++.....+++ ++ ++.|.-+||
T Consensus 191 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~~---~~~I~eI~V 262 (531)
T PLN02161 191 LPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEP--YI---GNVIEEISI 262 (531)
T ss_pred CCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 7999875 577643211 1111 13344455555555553 22 467888887
No 19
>PLN02705 beta-amylase
Probab=97.49 E-value=0.00034 Score=80.33 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC-----
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG----- 127 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G----- 127 (747)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ .-|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 344678899999999999999999999998 699999995 778899999999996 5655 33444 222
Q ss_pred CCCcccCc----CCCeE
Q 004525 128 GIPVWLHY----IPGTV 140 (747)
Q Consensus 128 G~P~WL~~----~p~~~ 140 (747)
-||.|+.. +|+|.
T Consensus 341 PLP~WV~e~g~~nPDif 357 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIF 357 (681)
T ss_pred cCCHHHHHhcccCCCce
Confidence 38999975 56764
No 20
>PLN02905 beta-amylase
Probab=97.42 E-value=0.00053 Score=79.08 Aligned_cols=77 Identities=16% Similarity=0.402 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC-----CC
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG-----GI 129 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G-----G~ 129 (747)
.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ .-|+- +-| -|
T Consensus 287 al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IPL 360 (702)
T PLN02905 287 GLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIPL 360 (702)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccccC
Confidence 3567899999999999999999999998 799999995 778899999999996 5655 33443 222 38
Q ss_pred CcccCc----CCCeE
Q 004525 130 PVWLHY----IPGTV 140 (747)
Q Consensus 130 P~WL~~----~p~~~ 140 (747)
|.|+.+ +|+|.
T Consensus 361 P~WV~e~g~~nPDif 375 (702)
T PLN02905 361 PHWVAEIGRSNPDIF 375 (702)
T ss_pred CHHHHHhhhcCCCce
Confidence 999875 57764
No 21
>PLN02801 beta-amylase
Probab=97.40 E-value=0.00046 Score=78.20 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=80.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 127 (747)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++.++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455788999999999999999999999997 699999995 778899999999996 5654 33433 112
Q ss_pred -CCCcccCc----CCCeEecc----CChhH----------------HHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 004525 128 -GIPVWLHY----IPGTVFRN----DTEPF----------------KYHMQKFMTLIVDMMKREKLFASQGGPIILAQV 181 (747)
Q Consensus 128 -G~P~WL~~----~p~~~~Rt----~d~~y----------------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 181 (747)
-+|.|+.+ +|+|.+-. -|+.| ++.-+.|++.....+++ + -.+|.|..+||
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~--l~~~~I~eI~V 183 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD--F--LEAGVIIDIEV 183 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH--h--ccCCeeEEEEE
Confidence 38999874 57763311 01111 23334455555555552 2 23468888888
No 22
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.40 E-value=0.00036 Score=75.38 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCcEE-ECCEEeEEEEEEeeC---CCCCCCChHHHHHHHHHcCCCEEEEcee--cCcc-C-------C----CCCeeeec
Q 004525 32 SRSLI-INGRRELIISAAIHY---PRSVPGMWPGLVQQAKEGGVNTIESYVF--WNGH-E-------L----SPGKYYFG 93 (747)
Q Consensus 32 ~~~f~-idGk~~~~~sG~~hy---~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h-E-------p----~~G~~dF~ 93 (747)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++=++ |.-+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 4443 3567889999999999999999999766 4322 1 1 12337777
Q ss_pred cc-----chHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 94 GR-----FNLVKFIKIIQQARMYMILRI---GPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 94 g~-----~dl~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
.. ..+++.|+.|++.||.+.|-| +||.-+-|-.| |.. | =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~------m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNI------M--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTS------S---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccC------C--------CHHHHHHHHHHHHHHHhc
Confidence 53 579999999999999975432 34443444332 111 1 136778999999999986
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHhcCCccc-eEEeccc-CCC-----CCcc--ccC-CCC
Q 004525 166 EKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGVP-WIMCQQF-DTP-----DPVI--NTC-NSF 235 (747)
Q Consensus 166 ~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~vP-~~~~~~~-~~~-----~~~~--~~~-ng~ 235 (747)
.+ +|| |=|-||+ . ......++.+.+.+.+++..-.-+ .++..+. ..+ .+-+ ... +|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 43 465 6689999 1 123677888888888887543222 2222221 010 0001 111 122
Q ss_pred cc---C---c----cC-CCCCCCCcEEee-cCCcccCccCCCCCCCChHHHHHHHHHHHHcCC
Q 004525 236 YC---D---Q----FT-PHSPSMPKIWTE-NWPGWFKTFGGRDPHRPSEDIAFSVARFFQKGG 286 (747)
Q Consensus 236 ~~---~---~----~~-~~~p~~P~~~~E-~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 286 (747)
.. + . .. ...|.+|.+..| -|.|--..+.+.....+++++....=+-+-.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 1 1 11 446889999999 344543333323345677877765433344455
No 23
>PLN00197 beta-amylase; Provisional
Probab=97.38 E-value=0.00064 Score=77.64 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG---- 127 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 127 (747)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455788999999999999999999999998 799999995 778899999999996 5655 33443 222
Q ss_pred -CCCcccCc----CCCeE
Q 004525 128 -GIPVWLHY----IPGTV 140 (747)
Q Consensus 128 -G~P~WL~~----~p~~~ 140 (747)
-||.|+.+ +|+|.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999875 57764
No 24
>PLN02803 beta-amylase
Probab=97.35 E-value=0.00078 Score=76.74 Aligned_cols=114 Identities=19% Similarity=0.404 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCC-CCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCC-----C
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHEL-SPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYG-----G 128 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G-----G 128 (747)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-| -
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~Ip 180 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 44577999999999999999999999998 599999995 778899999999996 5554 33433 222 3
Q ss_pred CCcccCc----CCCeEeccC----ChhH----------------HHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 004525 129 IPVWLHY----IPGTVFRND----TEPF----------------KYHMQKFMTLIVDMMKREKLFASQGGPIILAQV 181 (747)
Q Consensus 129 ~P~WL~~----~p~~~~Rt~----d~~y----------------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 181 (747)
||.|+.+ +|+|.+-.. |..| ++.-..|++.....+++ ++ |+.|..|||
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~l---~~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKD--YL---GGVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEe
Confidence 8999875 577643210 1111 13344555555555553 32 478888888
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.24 E-value=0.00051 Score=76.48 Aligned_cols=111 Identities=17% Similarity=0.309 Sum_probs=73.4
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEE--EecCccccc----ccCCCCCCc
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMI--LRIGPFVAA----EYNYGGIPV 131 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vi--lr~GPyi~a----Ew~~GG~P~ 131 (747)
-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| .+++.+++++.||++. |.+ .-|+ ..-+=-||.
T Consensus 18 ~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP~ 92 (402)
T PF01373_consen 18 LEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLPS 92 (402)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-H
T ss_pred HHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCCH
Confidence 4678999999999999999999999997 99999994 7888999999999974 443 2332 111224799
Q ss_pred ccCc---CCCeEec--c------------CChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecc
Q 004525 132 WLHY---IPGTVFR--N------------DTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQV 181 (747)
Q Consensus 132 WL~~---~p~~~~R--t------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QI 181 (747)
|+.. ..+|... + .... ++.-+.|++.....+++ +. +.|..+||
T Consensus 93 Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 93 WVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 9974 2255321 1 1123 56667777777777763 22 57888887
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.00 E-value=0.00094 Score=73.15 Aligned_cols=158 Identities=15% Similarity=0.217 Sum_probs=108.3
Q ss_pred EEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEc--eecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccc
Q 004525 44 IISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESY--VFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 44 ~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
.+|..++..++..+. ..+.+-..-||.|..- .-|...||++|+|+|+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688888877764331 4455555679999875 5599999999999999 89999999999999985332 11
Q ss_pred cccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccccccc---------cc
Q 004525 122 AEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYES---------FY 192 (747)
Q Consensus 122 aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~---------~~ 192 (747)
|.. ..|.|+...+... ....+...+.++++++.++.+++. -|.|.+|-|=||-=.... .+
T Consensus 82 --W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChhh
Confidence 433 7899998741100 000123788899999999888763 178999999999643211 11
Q ss_pred CcccHHHHHHHHHHHHhcCCccceEEecc
Q 004525 193 GEGGKRYALWAAKMAVAQNIGVPWIMCQQ 221 (747)
Q Consensus 193 g~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 221 (747)
...+.+|++..-+++++...++.++.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 12346799988899998888888998874
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0035 Score=67.65 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=98.6
Q ss_pred HHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCC
Q 004525 66 AKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDT 145 (747)
Q Consensus 66 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d 145 (747)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+--. +.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 4444444444455699999999999999 6789999999999976322 222 433 6899997633 245
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc----ccc---ccCcccHHHHHHHHHHHHhcCCccceEE
Q 004525 146 EPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGY----YES---FYGEGGKRYALWAAKMAVAQNIGVPWIM 218 (747)
Q Consensus 146 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~----~~~---~~g~~~~~y~~~l~~~~~~~g~~vP~~~ 218 (747)
++.++.+++++..++.+.+ |-|+.|-|=||-=. +.. .++..+.+|+++.-+.+++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999987 24999999999632 111 1224678999999999999887777887
Q ss_pred ecc
Q 004525 219 CQQ 221 (747)
Q Consensus 219 ~~~ 221 (747)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 764
No 28
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.94 E-value=0.0049 Score=73.17 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCCcEEEEEEeeecCcchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCc-cEEEEEEe
Q 004525 477 DTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGK-NEIALLSM 555 (747)
Q Consensus 477 d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 555 (747)
+..|..|||++|+++.. +.+.+..|.+.++...+.|||||++||...+... .+.+.+.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEEe
Confidence 46789999999988643 2246788999999999999999999999875543 34455443467774 59999997
Q ss_pred cc
Q 004525 556 TV 557 (747)
Q Consensus 556 n~ 557 (747)
|.
T Consensus 136 n~ 137 (604)
T PRK10150 136 NE 137 (604)
T ss_pred cC
Confidence 74
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.84 E-value=0.0012 Score=75.80 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
.|+++|+.||++|+|+-++-|.|...+|. +|++|-+|..-.+++|+.+.++||..++-- -.-.+|.||.+
T Consensus 59 ~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~~ 130 (455)
T PF00232_consen 59 RYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLED 130 (455)
T ss_dssp HHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHHH
T ss_pred hhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eecccccceee
Confidence 48999999999999999999999999999 699999999999999999999999977543 34568999987
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
.-+- .++...+...+|.+.+++++.+
T Consensus 131 ~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 131 YGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred cccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 4443 3466777777777888877764
No 30
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.57 E-value=0.003 Score=61.91 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=50.7
Q ss_pred CCCceEEEEEEECCCCC--CCeEEeccCC-ceEEEEEcCccccccccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCC
Q 004525 626 NQPLTWYKAVVKQPPGD--EPIGLDMLKM-GKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGE 702 (747)
Q Consensus 626 ~~~~~wYk~~F~~~~~~--d~~~Ld~~g~-gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~g 702 (747)
..+..|||++|++|... ..++|.+.|. ....|||||+.+|+-...+ .
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~------------------------------~ 115 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY------------------------------T 115 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT------------------------------S
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc------------------------------C
Confidence 35789999999999743 4688998886 5899999999999965421 1
Q ss_pred CceeeeecCcccccCCc-cEEEEE
Q 004525 703 PSQRWYHIPRSWFKPSE-NILVIF 725 (747)
Q Consensus 703 PqqtlYhVP~~~Lk~g~-N~Ivv~ 725 (747)
| - -+-|+. .|++|+ |+|.|.
T Consensus 116 ~-~-~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 116 P-F-EFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp --E-EEECGG-GSSSEEEEEEEEE
T ss_pred C-e-EEeChh-hccCCCCEEEEEE
Confidence 2 2 355865 788888 999884
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.55 E-value=0.024 Score=56.49 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCCCCChHHHHHHHHHcCCCEEEEceecCccC-----CC---CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccc
Q 004525 52 PRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHE-----LS---PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAE 123 (747)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 123 (747)
-.+.++.|+..++.||++|+++|=+- |...+ |. ++.|.-.....|+.+|++|++.||+|++..+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 46799999999999999999998431 22111 11 2223333445899999999999999998764 1
Q ss_pred cCCCCCCcccCcCCCeEeccCChhHH-HHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHH
Q 004525 124 YNYGGIPVWLHYIPGTVFRNDTEPFK-YHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALW 202 (747)
Q Consensus 124 w~~GG~P~WL~~~p~~~~Rt~d~~y~-~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~ 202 (747)
-|.|..+ .|+... +.-++..++|.+. +.+...+-+|=|-.|..... + ...++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~-------yg~h~sf~GWYip~E~~~~~--~--~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQR-------YGHHPSFYGWYIPYEIDDYN--W--NAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHH-------HcCCCCCceEEEecccCCcc--c--chHHHHHH
Confidence 2333331 222221 1112333334333 34445778888888887542 2 34566666
Q ss_pred HHHHHHhcCCccceE
Q 004525 203 AAKMAVAQNIGVPWI 217 (747)
Q Consensus 203 l~~~~~~~g~~vP~~ 217 (747)
|.+.+++.--+.|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 766666543345544
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.51 E-value=0.0063 Score=70.24 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=76.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
..|+++++.||++|+|+-++-|-|....|. +|+++-.|..-.+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 458999999999999999999999999997 567888888899999999999999977654 2345899997
Q ss_pred cC-CCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 135 YI-PGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
.. -+- .++...++-.+|.+.+++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 63 443 3455666666666666666653
No 33
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.43 E-value=0.0066 Score=70.01 Aligned_cols=96 Identities=6% Similarity=0.006 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
..|+++++.||++|+|+.++-|-|...+|. +++++-+|..-.+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556777788899999999999999986543 2345899997
Q ss_pred cC-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 135 YI-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
.. -+- .++...++..+|.+.++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 333 344555555555555555554
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.0093 Score=67.51 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred CCCCh-----HHHHHHHHHcCCCEEEEceecCccCCC----CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccC
Q 004525 55 VPGMW-----PGLVQQAKEGGVNTIESYVFWNGHELS----PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYN 125 (747)
Q Consensus 55 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (747)
....| ++.+..||.+|||+||+++.|..+++. |...+=+-...|++.|+.|++.||+|++-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 45568 899999999999999999994444654 33321222237899999999999999986321000 00
Q ss_pred CCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc
Q 004525 126 YGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGY 187 (747)
Q Consensus 126 ~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~ 187 (747)
++--..|.... . ......+++....++.|+.+.+ +.-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 01111222210 0 0022233444444555555554 3458999999999874
No 35
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.34 E-value=0.014 Score=64.39 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCC-CeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCC---CC-cccC
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSP-GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGG---IP-VWLH 134 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG---~P-~WL~ 134 (747)
+|.|+-+|+.|+|.||.=| |+ .|.. |..|.+ +..+..+-|+++||+|+|-+- |- --|..-| .| +|..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCCCCCCccCCC
Confidence 6899999999999999977 54 4444 444444 444555556889999998773 21 1121111 01 1221
Q ss_pred cCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 004525 135 YIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 186 (747)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg 186 (747)
.+-..-.++|..|.+.++..|+.. |=.+=||||-||..
T Consensus 99 --------~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin 136 (332)
T PF07745_consen 99 --------LSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEIN 136 (332)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGG
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCcccc
Confidence 133456789999999999999854 44678999999964
No 36
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.29 E-value=0.021 Score=71.64 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=64.2
Q ss_pred CcEEEEEEeeecCcchhhhcCCC-CCeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccEEEEEEecc
Q 004525 479 TDYLWYTTSIIVNENEEFLKNGS-RPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTV 557 (747)
Q Consensus 479 ~Gyl~Yrt~i~~~~~~~~~~~~~-~~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~ 557 (747)
.+-.|||++|+++..- .+. +..|.+.++...+.|||||+++|...+... .+.|.+.-.|+.|+|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRL--PAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCCc--eEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999886431 123 578999999999999999999998765432 344554434778899999999532
Q ss_pred CccccccCccc----ccccce-EEEecC
Q 004525 558 GLQNAGPFYEW----VGAGIT-SVKITG 580 (747)
Q Consensus 558 Gr~NyG~~~~~----~~kGI~-~V~l~g 580 (747)
-. |.++++ ...||. +|.|..
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEE
Confidence 21 222221 235998 998843
No 37
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.28 E-value=0.016 Score=72.86 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=65.7
Q ss_pred cEEEEEEeeecCcchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccEEEEEEeccCc
Q 004525 480 DYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGL 559 (747)
Q Consensus 480 Gyl~Yrt~i~~~~~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 559 (747)
+-.|||++|+++.. +.+.+..|.+.++...+.|||||++||...+... .+.|.+.-.|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecCC
Confidence 56799999998653 2246788999999999999999999998765443 34455433477889999999975432
Q ss_pred cccccCccc----ccccce-EEEecC
Q 004525 560 QNAGPFYEW----VGAGIT-SVKITG 580 (747)
Q Consensus 560 ~NyG~~~~~----~~kGI~-~V~l~g 580 (747)
-.| +++ ..-||. +|.|..
T Consensus 183 ~s~---le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 183 STY---LEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred CCc---cccCCccccccccceEEEEE
Confidence 222 221 236898 888844
No 38
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.12 E-value=0.014 Score=67.39 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||++|+|+-++-|.|.-.+|. .|.++-.|..-.+++|+.|.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 358999999999999999999999999997 577888899999999999999999866543 12348999986
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHH
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMM 163 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l 163 (747)
.-+- .++...++..+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5443 24444444444444444444
No 39
>PLN02998 beta-glucosidase
Probab=96.06 E-value=0.0055 Score=71.03 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||+||+|+-++-|-|.-.+|. .|.++-+|..-.+++|+.+.++||..++-- -.=-+|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 358999999999999999999999999996 677888899999999999999999866543 12247999976
Q ss_pred C-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 136 I-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222223455555555555555554
No 40
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.92 E-value=0.02 Score=66.00 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||++|+|+-++-|-|.-.+|. +|.++=+|..-.+++|+.+.++||..++-- -.=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 577887888899999999999999977654 12348999986
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
.-+- .++...++-.+|.+.++++++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 244444555555555555544
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.88 E-value=0.0093 Score=68.91 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
..|+++++.||++|+|+-++-|-|.-.+|. +|+++=.|..-.+++|+.+.++||..++-. -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667788888899999999999999866543 1234899997
Q ss_pred cC-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 135 YI-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
.. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4432222223455555555555555554
No 42
>PLN02814 beta-glucosidase
Probab=95.83 E-value=0.0075 Score=70.05 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||++|+|+-++-|-|.-.+|. +|.++-+|..-.+++|+.|.++||..++-.= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 358999999999999999999999999996 6888888999999999999999999665431 24 37999986
Q ss_pred C-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 136 I-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4431122223344444444444444444
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.69 E-value=0.011 Score=68.42 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
..|+++++.||+||+|+-++-|-|.-.+|. +|+++=.|..-.+++|+.|.++||.-++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 566788888899999999999999866543 1234899997
Q ss_pred cC-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 135 YI-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
.. -+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4432222223455555555555555554
No 44
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.063 Score=57.53 Aligned_cols=119 Identities=26% Similarity=0.269 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHH---HHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKII---QQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la---~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
.=+|.|+-+|+.|+|.|+.-| |+..--.-|.=-=.|++|+.+.+++| +..||+|++-+= +-.|..
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 347899999999999999854 76654444443445689999999886 558999999762 111111
Q ss_pred c-----CCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccc-cccccCc
Q 004525 135 Y-----IPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGY-YESFYGE 194 (747)
Q Consensus 135 ~-----~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~-~~~~~g~ 194 (747)
+ .|..-.--+-+.-.+++-.|.+..+..+++++. -+=||||.||-.+ +-+..|+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCC
Confidence 1 121111123345567888899999999986543 5679999999743 3333453
No 45
>PLN02849 beta-glucosidase
Probab=95.54 E-value=0.012 Score=68.37 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCC-CeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSP-GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
..|+++++.||++|+|+-++-|-|.-.+|.. |.++=.|..-.+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 3589999999999999999999999999973 77888888899999999999999966543 12248999976
Q ss_pred C-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 136 I-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 136 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4431122223455555555555555554
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.46 E-value=0.08 Score=50.86 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEEce-------ec--CccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 004525 61 GLVQQAKEGGVNTIESYV-------FW--NGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPV 131 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~yv-------~W--n~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 131 (747)
+.++.+|++|+|+|.++. +| .+|.+.|+- ++.-|.+++++|++.||+|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 457789999999999843 22 345555654 12366899999999999999998755 44444556799
Q ss_pred ccCcCCCeE-------------eccCChhHHHHHHHHHHHHHHHH
Q 004525 132 WLHYIPGTV-------------FRNDTEPFKYHMQKFMTLIVDMM 163 (747)
Q Consensus 132 WL~~~p~~~-------------~Rt~d~~y~~~~~~~~~~l~~~l 163 (747)
|+...++-+ .-+.+.+|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997644321 12235578887777777776654
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.35 E-value=0.15 Score=55.78 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecC-------ccCCC-------CCee-eecccchHHHHHHHHHHcCcEEEEecCcc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWN-------GHELS-------PGKY-YFGGRFNLVKFIKIIQQARMYMILRIGPF 119 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~-------~G~~-dF~g~~dl~~fl~la~~~GL~Vilr~GPy 119 (747)
.++.-++.|++++++|||+|=.-|-+. -.+|. +|.- .|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 556678899999999999997555431 12221 1110 133 79999999999999999776 11
Q ss_pred cccccCC----CCCCcccC-cCCCeEecc----CChhH----HHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 004525 120 VAAEYNY----GGIPVWLH-YIPGTVFRN----DTEPF----KYHMQKFMTLIVDMMKREKLFASQGGPIILAQVEN 183 (747)
Q Consensus 120 i~aEw~~----GG~P~WL~-~~p~~~~Rt----~d~~y----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN 183 (747)
-...-.. -..|.|+. +.++..... .+..| ..+|+.|+..++..|.. .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110011 12588876 456543333 22223 36778887777666653 22 477889873
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.76 E-value=0.081 Score=60.34 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCe--eeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK--YYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
..++++++.||+||+|+.++-|-|...-|..+. .+=.|-.-.+++++.|.++|+.-++-. ..=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 347899999999999999999999999997655 777888899999999999999976543 1223799998
Q ss_pred cC-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 135 YI-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 135 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
+. -+-. +..-.++-.+|.+.++++++
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 75 3432 33333444455555555554
No 49
>PRK09936 hypothetical protein; Provisional
Probab=92.75 E-value=0.27 Score=52.98 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=46.8
Q ss_pred CCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc-chHHHHHHHHHHcCcEEEEe
Q 004525 52 PRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR-FNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~Vilr 115 (747)
.+++++.|++.++.+|+.||+|+= |-|...-. =||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~----~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGD----ADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccC----CCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 467899999999999999999874 45654411 188764 59999999999999999874
No 50
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=92.74 E-value=0.7 Score=53.87 Aligned_cols=333 Identities=16% Similarity=0.220 Sum_probs=151.4
Q ss_pred EEeEEEEEEee------CCCCCCCChHHHHHHH---HHcCCCEEEEcee--------cCccCCCCCeee---ecc-c---
Q 004525 40 RRELIISAAIH------YPRSVPGMWPGLVQQA---KEGGVNTIESYVF--------WNGHELSPGKYY---FGG-R--- 95 (747)
Q Consensus 40 k~~~~~sG~~h------y~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~~d---F~g-~--- 95 (747)
+++.=++|++= ..+.+++.=++.|+.+ +.+|++.+|+.|- +.+-+ .|+-|+ |+= .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 34455777763 2233333222233333 4589999999884 22222 233221 221 1
Q ss_pred chHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCcccCcCCCe----Eec-cCChhHHHHHHHHHHHHHHHHhhccc
Q 004525 96 FNLVKFIKIIQQA--RMYMILRIGPFVAAEYNYGGIPVWLHYIPGT----VFR-NDTEPFKYHMQKFMTLIVDMMKREKL 168 (747)
Q Consensus 96 ~dl~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R-t~d~~y~~~~~~~~~~l~~~l~~~~~ 168 (747)
..+..+|+.|++. +|+++.-| |. .|+|+.....+ .++ ...+.|.++...|+.+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1234577777653 58888877 65 79999864332 244 234578888888888888888754
Q ss_pred ccccCCceEeecccccccccc---cccC------cccHHHHH-HHHHHHHhcCC--ccceEEeccc--CCCC---Ccccc
Q 004525 169 FASQGGPIILAQVENEYGYYE---SFYG------EGGKRYAL-WAAKMAVAQNI--GVPWIMCQQF--DTPD---PVINT 231 (747)
Q Consensus 169 ~~~~gGpII~~QIENEyg~~~---~~~g------~~~~~y~~-~l~~~~~~~g~--~vP~~~~~~~--~~~~---~~~~~ 231 (747)
|=+|=++-+.||..... ..|. +..++|++ .|.-++++.++ ++-++..+.. ..++ .++..
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 44898999999987421 1122 12456765 47778888876 7777665532 2221 11110
Q ss_pred ------CC--CCcc---Ccc-------CCCCCCCCcEEeecCCcccCccCCCCCCC---ChHHHHHHHHHHHHcCCeeee
Q 004525 232 ------CN--SFYC---DQF-------TPHSPSMPKIWTENWPGWFKTFGGRDPHR---PSEDIAFSVARFFQKGGSVHN 290 (747)
Q Consensus 232 ------~n--g~~~---~~~-------~~~~p~~P~~~~E~~~Gwf~~wG~~~~~~---~~~~~~~~~~~~l~~g~s~~n 290 (747)
.. +++| +.. ....|++.++.||-..|.- .|+...... .++..+..+..-|.++++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 01 2333 111 1346888999999865531 122111111 123344444444566644 2
Q ss_pred eee------eccCCCCCCC-CCCCcccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhhhhcccccCCccccCCCCCccc
Q 004525 291 YYM------YHGGTNFGRT-AGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGERSNLSLGSSQEA 363 (747)
Q Consensus 291 ~YM------~hGGTNfG~~-~g~~~~~tSYDy~Apl~E~G~~~tpky~~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 363 (747)
+-+ -.||-|++.. ..++..+.. +. +|. ..+|.|+.|....+|++.-...+-... .......+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st~---~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGSTS---SSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEEE---SSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEeec---cCCCCceeE
Confidence 222 2588887532 112221110 11 121 247899999988887764222221000 000112333
Q ss_pred eeeccCCcceeeeccccCCCCc-ceEEEec-------eeeecCCcee
Q 004525 364 DVYADSSGACAAFLANMDDKND-KTVVFRN-------VSYHLPAWSV 402 (747)
Q Consensus 364 ~~y~~~~~~~~~fl~n~~~~~~-~~v~f~~-------~~~~~p~~sv 402 (747)
..|....|..+..+.|..+.+. .+|++++ ..+++|+.||
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 4444444555555666554332 2455542 2456666544
No 51
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.45 E-value=21 Score=40.39 Aligned_cols=245 Identities=10% Similarity=0.112 Sum_probs=124.5
Q ss_pred CCCCChHHHHHHHHHcCCCEEEE-------ceecCccCCCCCeeeecccc-hHHHHHHHHHHcCcEEEEecCccccc-cc
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIES-------YVFWNGHELSPGKYYFGGRF-NLVKFIKIIQQARMYMILRIGPFVAA-EY 124 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~g~~-dl~~fl~la~~~GL~Vilr~GPyi~a-Ew 124 (747)
..++.| .+.+|++|+..|-. +-.|.-.-..--.-+-.-.+ -|.++.+.|+++||++-+ |... +|
T Consensus 81 fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~~DW 153 (384)
T smart00812 81 FDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSLFDW 153 (384)
T ss_pred CCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCHHHh
Confidence 444444 45788899986542 11254432211111111133 456777899999998766 4433 66
Q ss_pred CCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHH
Q 004525 125 NYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAA 204 (747)
Q Consensus 125 ~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~ 204 (747)
.. |.|....+....+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--++.|.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHHH
Confidence 53 5443211111123456778888888888887777632 3444442 2211110 1111245566
Q ss_pred HHHHhcCCcc-ceEEecccCCCCCccccCCCCc--c-CccCCCC-CCCCcE-EeecCCcccCccCC-CCCCCChHHHHHH
Q 004525 205 KMAVAQNIGV-PWIMCQQFDTPDPVINTCNSFY--C-DQFTPHS-PSMPKI-WTENWPGWFKTFGG-RDPHRPSEDIAFS 277 (747)
Q Consensus 205 ~~~~~~g~~v-P~~~~~~~~~~~~~~~~~ng~~--~-~~~~~~~-p~~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~~~ 277 (747)
+++++..-+. -.+.++...... . ..|.. + +...+.. ...|-- |+=.-.+|+-+-+. ....++++++...
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~~~~---~-~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWGGTG---C-KHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHhCCCCceEEEEccccccC---C-CCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 7777654332 113333321000 0 00111 1 1111110 111211 11111245544443 2346789999988
Q ss_pred HHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhhhhcccccCC
Q 004525 278 VARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHALLNGE 351 (747)
Q Consensus 278 ~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~tSYDy~Apl~E~G~~~tpky~~lr~l~~~~~~~~~~l~~~~ 351 (747)
+....++|++++ + |- +-+.+|.+....-..|+++...++..+++.-.+.
T Consensus 293 l~~~Vsk~GnlL---L-----NV-----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 293 LVDIVSKGGNLL---L-----NV-----------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HhhhcCCCceEE---E-----cc-----------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 888888888752 1 11 2235688777777899999999998777655443
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.89 E-value=2.3 Score=50.92 Aligned_cols=70 Identities=20% Similarity=0.117 Sum_probs=45.6
Q ss_pred EEeeCCCCCC-CChHH---HH-HHHHHcCCCEEEE-ceecCccCC----CCC-----eeeecccchHHHHHHHHHHcCcE
Q 004525 47 AAIHYPRSVP-GMWPG---LV-QQAKEGGVNTIES-YVFWNGHEL----SPG-----KYYFGGRFNLVKFIKIIQQARMY 111 (747)
Q Consensus 47 G~~hy~r~~~-~~W~~---~l-~k~ka~G~N~V~~-yv~Wn~hEp----~~G-----~~dF~g~~dl~~fl~la~~~GL~ 111 (747)
=|+|..-..+ -.++. .| .-+|++|+|+|.. +|+..-... .+- .-.|.+..+|.+|++.|+++||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 3566544322 23443 43 6679999999998 676432111 000 11455567999999999999999
Q ss_pred EEEec
Q 004525 112 MILRI 116 (747)
Q Consensus 112 Vilr~ 116 (747)
|||-.
T Consensus 222 VilD~ 226 (613)
T TIGR01515 222 VILDW 226 (613)
T ss_pred EEEEe
Confidence 99875
No 53
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.47 E-value=0.12 Score=58.61 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=106.2
Q ss_pred EEECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCcc-CC---CCCeeee-cccchHHHHHHHHHHcC
Q 004525 35 LIINGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGH-EL---SPGKYYF-GGRFNLVKFIKIIQQAR 109 (747)
Q Consensus 35 f~idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~la~~~G 109 (747)
|.++++++-.++..--+.++-.++-+++|+-|+.+|++++++. -+- |+ ++|.-.- ++..-++.|++.|..++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 7777777777766666667766677889999999999999994 444 55 2332221 23457899999999999
Q ss_pred cEEEEecCcccccccCCCCCC---cccC-cCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccc
Q 004525 110 MYMILRIGPFVAAEYNYGGIP---VWLH-YIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEY 185 (747)
Q Consensus 110 L~Vilr~GPyi~aEw~~GG~P---~WL~-~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEy 185 (747)
|+|+++. |.+-=.+||.- .|.- +.|+-.+ -|+.++..-++|+..+++-.+ ....|.+|-+-||-
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne~ 148 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNEP 148 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCCc
Confidence 9998764 45444566653 3442 2343211 266677777788888877554 34579999999993
Q ss_pred cccccccCcccHHHHHHHHHHHH
Q 004525 186 GYYESFYGEGGKRYALWAAKMAV 208 (747)
Q Consensus 186 g~~~~~~g~~~~~y~~~l~~~~~ 208 (747)
-.. -...+..+++|+++|+-
T Consensus 149 lv~---~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 149 LVE---APISVNNFWDWSGEMYA 168 (587)
T ss_pred ccc---ccCChhHHHHHHHHHHH
Confidence 221 12357899999999975
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=90.93 E-value=0.55 Score=46.74 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCCEEEEceecCcc-------CCCCCee-----eecccchHHHHHHHHHHcCcEEEEecCccccc
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGH-------ELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~h-------Ep~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+.+.|..+|++|+|+|.+-=++... .-.+..| .|....++.++++.|+++||+||+-.=|-=++
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 4456667999999999874332222 1112222 45566899999999999999999876443333
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.47 E-value=2.4 Score=51.76 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHcCCCEEEE-ceecC----ccCCCCCee-----eecccchHHHHHHHHHHcCcEEEEec
Q 004525 64 QQAKEGGVNTIES-YVFWN----GHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 64 ~k~ka~G~N~V~~-yv~Wn----~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.-+|++|+|+|.. +|+=. .|--.+.-| .|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6679999999996 55410 111111111 45567899999999999999999874
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.83 E-value=4.7 Score=48.59 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHHHcCCCEEEE-cee-------cCcc-----CCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 64 QQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 64 ~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.-+|++|+|+|+. +|. |... .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 331 4331 1111 34456799999999999999999864
No 57
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.23 E-value=5.9 Score=48.34 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHHcCCCEEEE-cee-------cCcc-----CCCCCeeeecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 62 LVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
.|.-+|++|+|+|+. +|+ |.+. .|.+ .|....++.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 357789999999996 442 4321 2222 4556789999999999999999987544
No 58
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.84 E-value=2.2 Score=48.57 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=79.3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEce-------------ecCccCCCCCeee-ecccchHHHHHHHHHHcCcEEEEecCccc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYV-------------FWNGHELSPGKYY-FGGRFNLVKFIKIIQQARMYMILRIGPFV 120 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~Vilr~GPyi 120 (747)
.+..-.+.|.+++++|+|||-.-| +|..-. ||.+- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566678999999999999997432 243332 44331 12444788889999999999999998887
Q ss_pred ccccCCCC---CCcccCc-CCCe-EeccCC-------hhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 004525 121 AAEYNYGG---IPVWLHY-IPGT-VFRNDT-------EPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 186 (747)
Q Consensus 121 ~aEw~~GG---~P~WL~~-~p~~-~~Rt~d-------~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg 186 (747)
.|--..-. .|.|+.. .|+. ..+... .++..+|+.|+..+...+.. .+ .|-++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 66322211 3677765 3443 233332 13456788887775544443 23 577889876655
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.77 E-value=5.6 Score=42.32 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccC
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 134 (747)
..-|++.|+.++++|++.|++-+ +.. ...+...+++ ..++..+.+.++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46699999999999999999943 222 2223444554 3478889999999999975 44431 11111
Q ss_pred cCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcc-------cHHHHHHHHHHH
Q 004525 135 YIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEG-------GKRYALWAAKMA 207 (747)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~-------~~~y~~~l~~~~ 207 (747)
+-..|+.-+++....++..++..+. + |.++|.+- ..++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 1223566666666667666666652 2 55666542 11110 1111 224556666677
Q ss_pred HhcCCcc
Q 004525 208 VAQNIGV 214 (747)
Q Consensus 208 ~~~g~~v 214 (747)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7766643
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.30 E-value=11 Score=46.24 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHcCCCEEEE-cee-------cCccCC---CCCeeeecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 58 MWPGLVQQAKEGGVNTIES-YVF-------WNGHEL---SPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp---~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4788899999999999996 332 433211 00 114556679999999999999999987533
No 61
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.99 E-value=10 Score=48.94 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEE-cee-------cCcc-----CCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 62 LVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.|.-+|++|+|+|+. +|+ |.+. .|.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 367899999999996 452 4321 1111 45567899999999999999999864
No 62
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.48 E-value=1 Score=52.13 Aligned_cols=68 Identities=10% Similarity=0.220 Sum_probs=46.1
Q ss_pred eeCCCCC----CCChH---HHHHHHHHcCCCEEEE-ceecCc-----cCCCCCe-e-------------eecccchHHHH
Q 004525 49 IHYPRSV----PGMWP---GLVQQAKEGGVNTIES-YVFWNG-----HELSPGK-Y-------------YFGGRFNLVKF 101 (747)
Q Consensus 49 ~hy~r~~----~~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G~-~-------------dF~g~~dl~~f 101 (747)
+|.|-++ .+.|. +.|.-++++|+++|-+ +++-+. |--.+-- | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 3544443 35575 5677789999999987 455442 2222211 1 24456799999
Q ss_pred HHHHHHcCcEEEEec
Q 004525 102 IKIIQQARMYMILRI 116 (747)
Q Consensus 102 l~la~~~GL~Vilr~ 116 (747)
++.|+++||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999865
No 63
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.94 E-value=1.9 Score=50.12 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=57.0
Q ss_pred EEEeeCCCCCCCChHHHHHHHH-HcCCCEEEEceecCcc--------C-CCCC--eeeecccchHHHHHHHHHHcCcEEE
Q 004525 46 SAAIHYPRSVPGMWPGLVQQAK-EGGVNTIESYVFWNGH--------E-LSPG--KYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 46 sG~~hy~r~~~~~W~~~l~k~k-a~G~N~V~~yv~Wn~h--------E-p~~G--~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
-|.-|....-++.|+..|+.++ +.||..|++ |++. | ...| .|||+ .||.++|...++||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555556777999999987 689999997 4443 1 1233 39999 99999999999999988
Q ss_pred EecCcccccccCCCCCCcccCcCCCeEecc----CChhHHHHHHHHHHHHHHHHh
Q 004525 114 LRIGPFVAAEYNYGGIPVWLHYIPGTVFRN----DTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 114 lr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt----~d~~y~~~~~~~~~~l~~~l~ 164 (747)
+..|- .|.++.......+.- .-|.-.+++..+++++++++.
T Consensus 102 vel~f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~ 146 (486)
T PF01229_consen 102 VELGF----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYI 146 (486)
T ss_dssp EEE-S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHH
T ss_pred EEEEe----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHH
Confidence 77652 555554432221111 122334555555555555544
No 64
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=84.53 E-value=2.5 Score=49.16 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=95.5
Q ss_pred CCcEEECCEEeEEEEEEeeCC-----CCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHH
Q 004525 32 SRSLIINGRRELIISAAIHYP-----RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQ 106 (747)
Q Consensus 32 ~~~f~idGk~~~~~sG~~hy~-----r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~ 106 (747)
+..|.|++.|.++-++.--+. |..-+.-+-.|+-++++|+|++++ |. -|.|. -+.|.++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvYE------sd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVYE------SDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Ccccc------chhHHHHhh
Confidence 567899999999988876542 234445566799999999999999 64 23443 369999999
Q ss_pred HcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccc--c
Q 004525 107 QARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVEN--E 184 (747)
Q Consensus 107 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN--E 184 (747)
+.||.|---. =+.||-. ..|..|++.|+.=++.=+.+|+.|| .||.+-=.| |
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999874111 1233322 2577899988887777777787654 577765444 4
Q ss_pred ccccccccCc-------ccHHH----HHHHHHHHHhcCCccceEEecc
Q 004525 185 YGYYESFYGE-------GGKRY----ALWAAKMAVAQNIGVPWIMCQQ 221 (747)
Q Consensus 185 yg~~~~~~g~-------~~~~y----~~~l~~~~~~~g~~vP~~~~~~ 221 (747)
-.-.+..|+. .-++| .+-++++.....-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2211112221 12333 3335555555455678887643
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.31 E-value=8.8 Score=40.62 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccCc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 135 (747)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 46999999999999999999532 2221 01122333 3478999999999999975 3332 11000
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccc--cccCcccHHHHHHHHHHHHhcCCc
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYE--SFYGEGGKRYALWAAKMAVAQNIG 213 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~--~~~g~~~~~y~~~l~~~~~~~g~~ 213 (747)
.+.+.|+..+++..+.++++++..+. + |.++|-+.--..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 12335666565555566666665552 2 44555442100000000 000 01235677777888887765
Q ss_pred c
Q 004525 214 V 214 (747)
Q Consensus 214 v 214 (747)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 66
>PRK12313 glycogen branching enzyme; Provisional
Probab=82.87 E-value=2.1 Score=51.41 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHHHHcCCCEEEE-cee-------cCc-----cCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 63 VQQAKEGGVNTIES-YVF-------WNG-----HELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 63 l~k~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
|.-+|++|+|+|.. +|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 553 321 11111 45667899999999999999999874
No 67
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.06 E-value=4.8 Score=44.34 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHcCCCEEEE-------ceecCccCCCCCeeeec-c-cchHHHHHHHHHHcCcEEEEecCcccccccCC
Q 004525 56 PGMWPGLVQQAKEGGVNTIES-------YVFWNGHELSPGKYYFG-G-RFNLVKFIKIIQQARMYMILRIGPFVAAEYNY 126 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~-g-~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~ 126 (747)
++.-+..|+.+++.|+|+|-+ .|.+..-.|..-+..-. . ..|+.++++.++++|+++|.|+=-+--..- .
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l-a 90 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL-A 90 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-h
Confidence 456788999999999999875 24454433333222111 1 369999999999999999999843221100 0
Q ss_pred CCCCcccCcCC-CeEeccCC-----hhHHHHHHHHHHHHHHHHhhcc
Q 004525 127 GGIPVWLHYIP-GTVFRNDT-----EPFKYHMQKFMTLIVDMMKREK 167 (747)
Q Consensus 127 GG~P~WL~~~p-~~~~Rt~d-----~~y~~~~~~~~~~l~~~l~~~~ 167 (747)
.--|.|-.+.. +-..|... .+|.+++.+|.-.|++.++..+
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11455554311 11122111 2588999999999999988643
No 68
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.70 E-value=1.5 Score=46.19 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCC--eee-------ecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPG--KYY-------FGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------F~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+.|..+|++|+|+|.+-=++......-| .-| |.+..+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688899999999997433322111111 112 3345799999999999999999765
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=80.20 E-value=2.8 Score=49.43 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEE-cee-------cCcc-----CCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 61 GLVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.|.-+|++|+|+|.. +|+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688889999999996 452 4321 2222 35567799999999999999999874
No 70
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=79.19 E-value=18 Score=40.27 Aligned_cols=136 Identities=14% Similarity=0.215 Sum_probs=86.2
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHH---HcCcEEEEecCcccccccCCCCCCc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQ---QARMYMILRIGPFVAAEYNYGGIPV 131 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~ 131 (747)
.|+..+..++.+|+.|++.--.|-.|. .|.+-|++-++..- +-+|..-|. |.+-.|.. .
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~----~ 117 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR----R 117 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----c
Confidence 567788899999999999999988884 46667777776553 334443333 22333311 2
Q ss_pred ccCcCCCeEeccCChhHH--HHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHh
Q 004525 132 WLHYIPGTVFRNDTEPFK--YHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVA 209 (747)
Q Consensus 132 WL~~~p~~~~Rt~d~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~ 209 (747)
|-.....+.+- ..|. +..++.++.|++.+++..+.--+|-||+++=--.+. .+-+++++.+++.+++
T Consensus 118 w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 118 WDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred cCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 32222222221 1221 224667788888888755655688899988422222 1457899999999999
Q ss_pred cCCccceEEe
Q 004525 210 QNIGVPWIMC 219 (747)
Q Consensus 210 ~g~~vP~~~~ 219 (747)
+|+.-+.+..
T Consensus 187 ~G~~giyii~ 196 (345)
T PF14307_consen 187 AGLPGIYIIA 196 (345)
T ss_pred cCCCceEEEE
Confidence 9998665544
No 71
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=79.07 E-value=2.2 Score=47.77 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=48.1
Q ss_pred EEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCccccc
Q 004525 45 ISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 45 ~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+|=++++...+.+..+..|++|+++|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45677777777888999999999999988766 788888533221 2378899999999999999998775543
No 72
>PRK01060 endonuclease IV; Provisional
Probab=78.75 E-value=29 Score=36.78 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=58.6
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEE---EEecCcccccccCCCCCCcccCc
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM---ILRIGPFVAAEYNYGGIPVWLHY 135 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~WL~~ 135 (747)
+++.++.++++|++.|+..+. +-+.-.++.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 899999999999999998543 112211222222 26888899999999984 32 23331
Q ss_pred CCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 004525 136 IPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQ 180 (747)
Q Consensus 136 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (747)
+.+-+.|+..+++..+.+++.++.-+. + |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~~--l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCAA--L----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 123345777777777777777666552 2 44555554
No 73
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=78.45 E-value=33 Score=38.79 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHcCCCEEEEc----eecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE-ecCcccccccCCCCC
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESY----VFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL-RIGPFVAAEYNYGGI 129 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~ 129 (747)
++....+++++++++|+..|+.. ++|..-..+ -..++.++-++++++||.|.. -++-+.+..+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 33457899999999999999963 122111100 023578899999999999763 3321111111111
Q ss_pred CcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 130 PVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 130 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
-+-+.|+..+++.-+.++..++.-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334577666655555555555444
No 74
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.41 E-value=3.2 Score=48.96 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCCEEEE-ceecCccCCCCCee----------eecccchHHHHHHHHHHcCcEEEEec
Q 004525 59 WPGLVQQAKEGGVNTIES-YVFWNGHELSPGKY----------YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~----------dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.+.|.-+|++|+++|-+ +++-+-.. ...| .|.+..+|.++++.|+++||+|||-.
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567888999999999986 45432110 0122 24456799999999999999999864
No 75
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.13 E-value=5.5 Score=51.36 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=68.1
Q ss_pred CcEEECCEEeEEEEE---EeeCCCC--CCCChHHHHHHHHHcCCCEEEE-cee-cCc---cCCCCCee----ee----cc
Q 004525 33 RSLIINGRRELIISA---AIHYPRS--VPGMWPGLVQQAKEGGVNTIES-YVF-WNG---HELSPGKY----YF----GG 94 (747)
Q Consensus 33 ~~f~idGk~~~~~sG---~~hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn~---hEp~~G~~----dF----~g 94 (747)
-.+.|+|++++.+.+ +-..+++ +-+.|++.|..+|++|+|+|.. +|+ =.. .=...+++ +| .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 346666644444333 2345554 4467999999999999999985 454 111 00111222 23 25
Q ss_pred cchHHHHHHHHHHc-CcEEEEecCcccccccCCCCC-CcccCcCCCeEeccCChhHHHH
Q 004525 95 RFNLVKFIKIIQQA-RMYMILRIGPFVAAEYNYGGI-PVWLHYIPGTVFRNDTEPFKYH 151 (747)
Q Consensus 95 ~~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~Rt~d~~y~~~ 151 (747)
..|+.++++.|++. ||++|+-.= |+.-+- =.||.++|+.-.-..+.+||++
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 67899999999985 999987641 333222 2588877775444444455543
No 76
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=76.40 E-value=4.5 Score=35.72 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=34.7
Q ss_pred CeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeecccc-CCCccEEEEEEeccCcc
Q 004525 503 PVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISL-KAGKNEIALLSMTVGLQ 560 (747)
Q Consensus 503 ~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 560 (747)
..|++.+-...++-||||+++|+....+ .+.+ .+ ..|.|+|++ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 4566555566999999999998865332 1222 34 678999988 7777764
No 77
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=76.17 E-value=23 Score=37.62 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHc-CcEEEE
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQA-RMYMIL 114 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~-GL~Vil 114 (747)
.-|++.|+.+|++|++.|++-+........+ .....+++.+.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEE
Confidence 6799999999999999999866432111111 11346899999999999 666654
No 78
>PLN02960 alpha-amylase
Probab=75.84 E-value=5.1 Score=49.49 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEE-cee-------cCccCCC--CCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIES-YVF-------WNGHELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
++.|.-+|++|+|+|+. .|+ |.+.-.. .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688899999999996 453 4322100 001134456799999999999999999875
No 79
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.38 E-value=22 Score=37.65 Aligned_cols=125 Identities=14% Similarity=0.240 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccCcC
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAAEYNYGGIPVWLHYI 136 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~ 136 (747)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999532 1111 01112333 2368889999999999975 333210 0011
Q ss_pred CCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCc-------ccHHHHHHHHHHHHh
Q 004525 137 PGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGE-------GGKRYALWAAKMAVA 209 (747)
Q Consensus 137 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~-------~~~~y~~~l~~~~~~ 209 (747)
+-+.++.-++.....+++.++..+. + |.++|-+. |.. ..++. .-.+.++.|.+.+++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1134555666666667766666652 2 55666542 110 00111 113456777777777
Q ss_pred cCCcc
Q 004525 210 QNIGV 214 (747)
Q Consensus 210 ~g~~v 214 (747)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77643
No 80
>PRK09505 malS alpha-amylase; Reviewed
Probab=75.21 E-value=5.5 Score=48.37 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=42.0
Q ss_pred hHHHHHHHHHcCCCEEEE-ceecCccCCC----CC------------------eeeecccchHHHHHHHHHHcCcEEEEe
Q 004525 59 WPGLVQQAKEGGVNTIES-YVFWNGHELS----PG------------------KYYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|..+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 457788899999999986 4554433211 11 113445679999999999999999987
Q ss_pred c
Q 004525 116 I 116 (747)
Q Consensus 116 ~ 116 (747)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 81
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.03 E-value=41 Score=35.43 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
.-|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 359999999999999999983210 011111 121 2468889999999999985
No 82
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=74.48 E-value=5 Score=47.99 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------cCccC-----CCCCeee----ec--ccchHHHHHHHHHHcCcEEE
Q 004525 61 GLVQQAKEGGVNTIES-YVF---------------WNGHE-----LSPGKYY----FG--GRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----F~--g~~dl~~fl~la~~~GL~Vi 113 (747)
+.|.-+|++|+|+|+. +|+ |.+.- |.+ .|- +. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 454 33221 110 110 11 12689999999999999999
Q ss_pred Eec
Q 004525 114 LRI 116 (747)
Q Consensus 114 lr~ 116 (747)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 83
>PRK10785 maltodextrin glucosidase; Provisional
Probab=74.34 E-value=5.8 Score=47.41 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEE-ceecC--ccCCCCCee-----eecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIES-YVFWN--GHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788889999999996 56632 222111111 34556799999999999999999754
No 84
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.34 E-value=59 Score=33.92 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 13688899999999999864
No 85
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.25 E-value=6.7 Score=38.86 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEec
Q 004525 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFR 142 (747)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 142 (747)
|+.++++|+..|+............ ...++.+.++++++||.+..--.+.. + .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---WS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---SC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---cc-------cccccc
Confidence 6789999999999865432222111 34799999999999999763221110 0 00 101123
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccc--ccccccc--cccCcccHHHHHHHHHHHHhcCCcc
Q 004525 143 NDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVE--NEYGYYE--SFYGEGGKRYALWAAKMAVAQNIGV 214 (747)
Q Consensus 143 t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIE--NEyg~~~--~~~g~~~~~y~~~l~~~~~~~g~~v 214 (747)
+..++ ++.....+.+.++..+. + |...|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 66666777777777763 2 5566777643 1111100 000 123456677777777777543
No 86
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=72.26 E-value=6.2 Score=42.16 Aligned_cols=63 Identities=22% Similarity=0.253 Sum_probs=45.9
Q ss_pred cccchhhccCC---CCCCcEEEEEEeeecCcchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeC
Q 004525 465 KSGFVDHINTT---KDTTDYLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASG 528 (747)
Q Consensus 465 ~p~~~Eql~~t---~d~~Gyl~Yrt~i~~~~~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~ 528 (747)
.|.++-.+++. +|..|.+||+.++.++.+. +.-.++...|++.++|-.|.|||||.-+=...+
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 34445555553 4788999999999887543 123356788999999999999999987555443
No 87
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.10 E-value=7 Score=46.28 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCEEEE-ceecCccCCC-CCee----------eecccchHHHHHHHHHHcCcEEEEec
Q 004525 59 WPGLVQQAKEGGVNTIES-YVFWNGHELS-PGKY----------YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~~----------dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.+.|..+|++|+++|-+ +|+-. |. ...| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457888999999999987 45421 11 1122 34456799999999999999999754
No 88
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=70.54 E-value=4.5 Score=33.96 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccEEEEEEeccCccc
Q 004525 504 VLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNEIALLSMTVGLQN 561 (747)
Q Consensus 504 ~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N 561 (747)
.|.|.+.-..|.|||||+++|... +.+. .++.|.++| -++.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v--~v~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTV--TVEKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEE--EEEECCCee
Confidence 466776667899999999999433 2222 155676555 445555443
No 89
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.28 E-value=5.7 Score=46.81 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCEEEE-ceecC---ccCCCCCee-----eecccchHHHHHHHHHHcCcEEEEe
Q 004525 59 WPGLVQQAKEGGVNTIES-YVFWN---GHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~Wn---~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
+.+.|.-+|++|+|+|-. +|+=+ -|--.+--| .|.+..|+.++++.|+++||+|||-
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 667889999999999986 44411 110000011 2455679999999999999999984
No 90
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=69.41 E-value=7.9 Score=46.38 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCEEEE-cee-------cCcc-----CCCCCeeeecccchHHHHHHHHHHcCcEEEEe
Q 004525 59 WPGLVQQAKEGGVNTIES-YVF-------WNGH-----ELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
=.+.|.-+|+||+++|+. +|. |.+- -|+. .|....||.+||+.|+++||-|||-
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 356788899999999996 331 5432 1211 3445579999999999999999985
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=69.22 E-value=17 Score=29.98 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
|..-.+.++-+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999732 333 58877765 5778999999999988754
No 92
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=68.36 E-value=76 Score=33.30 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=34.8
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
++++|++++++|++.|++ |. +. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl---~~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEF---MF---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEE---cC---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 789999999999999998 22 11 13799999999999999864
No 93
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=68.36 E-value=7.9 Score=41.12 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 778899999999999999998 45555544 34677999999999999999887
No 94
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.90 E-value=19 Score=38.81 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=60.5
Q ss_pred eEEEeCCcEEECCEEeEEEEE--EeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec--ccchHHHHH
Q 004525 27 NVTYDSRSLIINGRRELIISA--AIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG--GRFNLVKFI 102 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG--~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl 102 (747)
.|.+. .+.+.+.+++++.| ++| .++.-.+.-+++|++|+..++.|.+=+...| +.|. |...+..+-
T Consensus 15 ~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 15 IVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILK 84 (266)
T ss_pred EEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHH
Confidence 45443 36777778888888 333 5666778889999999999999988744443 3555 577888899
Q ss_pred HHHHHcCcEEEEec
Q 004525 103 KIIQQARMYMILRI 116 (747)
Q Consensus 103 ~la~~~GL~Vilr~ 116 (747)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999888665
No 95
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.68 E-value=97 Score=37.00 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHcCCCEEEEc-eecCccCCCCCee--------eeccc----chHHHHHHHHHHcCcEEEEecCccccccc
Q 004525 58 MWPGLVQQAKEGGVNTIESY-VFWNGHELSPGKY--------YFGGR----FNLVKFIKIIQQARMYMILRIGPFVAAEY 124 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~la~~~GL~Vilr~GPyi~aEw 124 (747)
.=++.|.+|+..-||.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|++++.=--=|-+-+.
T Consensus 119 ~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~ 198 (559)
T PF13199_consen 119 DIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNN 198 (559)
T ss_dssp HHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT
T ss_pred hHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccC
Confidence 45678999999999999999 7799999987643 22332 35789999999999999754322222222
Q ss_pred --CCCCCCcccC
Q 004525 125 --NYGGIPVWLH 134 (747)
Q Consensus 125 --~~GG~P~WL~ 134 (747)
..|=.|.|-.
T Consensus 199 ~~~~gv~~eW~l 210 (559)
T PF13199_consen 199 YEEDGVSPEWGL 210 (559)
T ss_dssp --S--SS-GGBE
T ss_pred cccccCCchhhh
Confidence 3566788875
No 96
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.64 E-value=9.5 Score=41.48 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=48.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCC-CCeeeeccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
..+..++.++++|+.|+.+=.+.+=...+... -+.|.|+-. -|..++++.++++|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 55667899999999997765444433333322 235655532 389999999999999999998888854
No 97
>PLN02361 alpha-amylase
Probab=65.78 E-value=12 Score=42.54 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEceec---CccCCCCCe-e----eecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIESYVFW---NGHELSPGK-Y----YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~W---n~hEp~~G~-~----dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+.|..++++|+++|-+.=+. ..|--.+.. | .|....+|.++++.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 356777899999999874322 122222222 1 24456799999999999999999865
No 98
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.85 E-value=48 Score=37.56 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCe----Eecc-CChhHHHHHHHHHHHH
Q 004525 85 LSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGT----VFRN-DTEPFKYHMQKFMTLI 159 (747)
Q Consensus 85 p~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~Rt-~d~~y~~~~~~~~~~l 159 (747)
+..|.|||+....=+.||+.|++.|+..++-+- =-.|.|+.+.-.. ...+ --+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 467999999877777899999999999877652 2378888763211 0011 1345667777888888
Q ss_pred HHHHhhcccccccCCceEeecccccccccc-------cccC-cccHHHHHHHHHHHHhcCCccceEEecc
Q 004525 160 VDMMKREKLFASQGGPIILAQVENEYGYYE-------SFYG-EGGKRYALWAAKMAVAQNIGVPWIMCQQ 221 (747)
Q Consensus 160 ~~~l~~~~~~~~~gGpII~~QIENEyg~~~-------~~~g-~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 221 (747)
+++++.+++ +|=-+--=||....- +.+. +...+.++.|...+++.|++.-+..++.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888864332 333333348875321 0111 2346788899999999999877655543
No 99
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=64.38 E-value=6.2 Score=39.47 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=28.6
Q ss_pred CCceEEEEEcCccccccccCCCCCCCCCCCCcCCcccCCCCCCCcccCCCCCCceeeeecCcccccCCccEEEEEEecCC
Q 004525 651 KMGKGLAWLNGEEIGRYWPRKSRKSSPHDECVQECDYRGKFNPDKCITGCGEPSQRWYHIPRSWFKPSENILVIFEEKGG 730 (747)
Q Consensus 651 g~gKG~vwVNG~~iGRYW~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~c~gPqqtlYhVP~~~Lk~g~N~Ivv~E~~g~ 730 (747)
..++=+|.||| ..+..+....+ .+.|.||+.- -++-.+.--+.||+..|++|+|+|.+--..|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~--------~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG--------NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp TT-EEEEEETT-EE-------------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCCEEEEEcC-ccCCccccccC--------CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccCC
Confidence 34677999999 77776632111 1234443331 11123334467999999999999987544444
No 100
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=63.09 E-value=38 Score=38.56 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=57.3
Q ss_pred eCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCC----Ceeeeccc---chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 50 HYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSP----GKYYFGGR---FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 50 hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~---~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|.+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46667777778899999999999877655576432211 33221110 249999999999999999999887765
Q ss_pred ccC--CCCCCcccCcCCC
Q 004525 123 EYN--YGGIPVWLHYIPG 138 (747)
Q Consensus 123 Ew~--~GG~P~WL~~~p~ 138 (747)
.=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 221 2347999987554
No 101
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=62.93 E-value=3.1 Score=43.48 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEe
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
-...+++.++|-+.|.+.++|....+..-.+... ++.++.+.|++.||+||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5668889999999999999997766554344444 8999999999999999998
No 102
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.94 E-value=32 Score=41.77 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHcCCCEEE---------------EceecCccCCCCCeee-ecccchHHHHHHHHHHcCcEEEEecCccc
Q 004525 57 GMWPGLVQQAKEGGVNTIE---------------SYVFWNGHELSPGKYY-FGGRFNLVKFIKIIQQARMYMILRIGPFV 120 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~---------------~yv~Wn~hEp~~G~~d-F~g~~dl~~fl~la~~~GL~Vilr~GPyi 120 (747)
+.-...|+.+|++|+|||= .|++| -|= ||+-| |+ .-...++.+.|++|..|-.||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f~-----~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLFN-----RVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCcC-----HHHHHHHHhhCCEEEEecccee
Confidence 3467789999999999985 46677 333 34443 22 1134568999999999999985
Q ss_pred cc---------ccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccc
Q 004525 121 AA---------EYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEY 185 (747)
Q Consensus 121 ~a---------Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEy 185 (747)
.. +++..+-|...+ |+-..| =.+|..++++|++.|.+-|+.+ .+|=++|.+-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 222122222111 110122 2357788999999999998853 256667765553
No 103
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=60.02 E-value=12 Score=48.36 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEE-ceecCccCCC---CC-----ee----------eec--ccchHHHHHHHHHHcCcEEEEec
Q 004525 61 GLVQQAKEGGVNTIES-YVFWNGHELS---PG-----KY----------YFG--GRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----~~----------dF~--g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.|.-+|++|+|+|.. +|+=...|.. .| -| .|. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653222211 11 02 223 56799999999999999999874
No 104
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=59.39 E-value=17 Score=44.92 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHcCCCEEEE-ceecC----ccCCCC---C--eeeecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 57 GMWPGLVQQAKEGGVNTIES-YVFWN----GHELSP---G--KYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~-yv~Wn----~hEp~~---G--~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
+.|.+.|.-++++|+++|-+ +|+=+ .|--.. . .-+|.+..++.+|++.|+++||.|||-.=|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34788999999999999976 44311 111100 0 113557889999999999999999987543
No 105
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=59.36 E-value=6.7 Score=46.68 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=28.1
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHHH-HHHHhh
Q 004525 309 ITTSYDYEAPIDEYGLPRNPKWGHLKEL-HGAIKL 342 (747)
Q Consensus 309 ~~tSYDy~Apl~E~G~~~tpky~~lr~l-~~~~~~ 342 (747)
..|||||+||+.|+|+++++||.++|+. .+|++.
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n 359 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREACAAFLSN 359 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHHHHHHhc
Confidence 6899999999999999889999999953 234443
No 106
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=58.99 E-value=33 Score=37.14 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=70.3
Q ss_pred EEEEEEeeCCCCCCC-ChHH---HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 43 LIISAAIHYPRSVPG-MWPG---LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 43 ~~~sG~~hy~r~~~~-~W~~---~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
+-+++..|+...+.. ..+. +|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888775432 2333 34333369999998843 35555 7889999999997765444454
Q ss_pred ccc---------cccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 119 FVA---------AEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 119 yi~---------aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
..+ +||..--+|.|+.+.=. ....+++...++--.+..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 57777778999976200 01233455566777788888888774
No 107
>PRK12677 xylose isomerase; Provisional
Probab=58.47 E-value=2.2e+02 Score=32.39 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec---ccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccc
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG---GRFNLVKFIKIIQQARMYMI-LRIGPFVAAEYNYGGIPVWL 133 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 133 (747)
.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.++++++||.|. +-+.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999873 1111112221 11358899999999999986 44432111111111
Q ss_pred CcCCCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 134 HYIPGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 134 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345567766665555655555544
No 108
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=58.21 E-value=15 Score=44.86 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEE-ceecCccC---CCCC-----ee---e-------e---cccchHHHHHHHHHHcCcEEEEec
Q 004525 62 LVQQAKEGGVNTIES-YVFWNGHE---LSPG-----KY---Y-------F---GGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~---d-------F---~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.|.-+|++|+|+|.. +|+=...+ ...| -| | | ....+|.++++.|+++||+|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 55411111 1111 01 1 2 124689999999999999999875
No 109
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=57.96 E-value=17 Score=30.65 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.6
Q ss_pred ccceEEEEEECCEEEEEEeCCCCC
Q 004525 509 SKGHALHAFANQELQGSASGNGTH 532 (747)
Q Consensus 509 ~~~d~a~vfvng~~iG~~~~~~~~ 532 (747)
...|.|.||++++++|++++....
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 468999999999999999976544
No 110
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.95 E-value=1.5e+02 Score=31.64 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHcCCCEEEEce
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYV 78 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv 78 (747)
.-.|+++|.-+|++||+.|++-|
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv 39 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV 39 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec
Confidence 34599999999999999999854
No 111
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.40 E-value=30 Score=39.31 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
...+.|+++++.+|++||+....=+- ....+.. .-|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 36788999999999999998887443 1222222 368888999999999999987
No 112
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=56.15 E-value=21 Score=41.83 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCC---CeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSP---GKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~---G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
.++++++.||++|++.-+.-|-|...=|.- +..+-.|..-...+|+...++||..++-. -.=.+|.||-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 589999999999999999999999877753 45677788888889999999999966543 1234798887
Q ss_pred c-CCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 004525 135 Y-IPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQ 180 (747)
Q Consensus 135 ~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (747)
+ .-+-.-+..=..|+++++-=|+++..++| .+..=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 44432233334677777777888888887 34334555555554
No 113
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=55.66 E-value=30 Score=36.79 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCee--eecc--cchHHHHHHHHHHcCcEEEEecCccc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKY--YFGG--RFNLVKFIKIIQQARMYMILRIGPFV 120 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--dF~g--~~dl~~fl~la~~~GL~Vilr~GPyi 120 (747)
..+..++.++++++.||-.=.+.+=+...+. -+.| +|+. --|..++++.++++|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999986666555444433 3555 4432 24899999999999999999998887
No 114
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=55.23 E-value=23 Score=44.19 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHcCCCEEEE-ceecCccCCCCCe---e----------eecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 57 GMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGK---Y----------YFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
+.+.+.|.-++++|+|+|-. +|+ +..+|. | .|.+..++.+|++.|+++||.|||-.=|
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44889999999999999986 343 222221 1 2446789999999999999999987644
No 115
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=54.81 E-value=22 Score=37.63 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
....++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 367788899999999999998 56666655 347789999999999999987773
No 116
>PRK03705 glycogen debranching enzyme; Provisional
Probab=54.16 E-value=20 Score=43.52 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEE-ceecCccCCCC---C-----ee----------eeccc-----chHHHHHHHHHHcCcEEEEec
Q 004525 62 LVQQAKEGGVNTIES-YVFWNGHELSP---G-----KY----------YFGGR-----FNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~----------dF~g~-----~dl~~fl~la~~~GL~Vilr~ 116 (747)
.|.-+|++|+|+|.. +|+=...++.. | -| .|... .++.++++.|+++||+|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45421111110 0 01 12221 479999999999999999874
No 117
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.04 E-value=20 Score=39.32 Aligned_cols=72 Identities=8% Similarity=0.146 Sum_probs=50.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCC--eeeecccc--hHHHHHHHHHHcCcEEEEecCcccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPG--KYYFGGRF--NLVKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
+|..|. ..+.-++.++++++.||-.=.+.+=|.... ..+ .|.|+-.+ |..++++.++++|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 344453 445567889999999887655544444333 234 77776433 8999999999999999988767663
No 118
>PLN00196 alpha-amylase; Provisional
Probab=53.98 E-value=27 Score=40.20 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-eecCc--cCCCCCe-ee-----ecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIESY-VFWNG--HELSPGK-YY-----FGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----F~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+.|..+|++|+++|-+. ++=+. |--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467788899999999874 44221 2222221 22 3345799999999999999999865
No 119
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=53.34 E-value=61 Score=32.31 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=30.7
Q ss_pred CeEEecccceEEEEEECCEEEEEEe---CCCC-CCC---ceeeeccccCCCccEEEEEEeccCc
Q 004525 503 PVLLIESKGHALHAFANQELQGSAS---GNGT-HPP---FKYKNPISLKAGKNEIALLSMTVGL 559 (747)
Q Consensus 503 ~~L~i~~~~d~a~vfvng~~iG~~~---~~~~-~~~---~~~~~~~~l~~g~~~L~ILven~Gr 559 (747)
..|.|.. ..+-.+||||+.||... +... ... .++.+.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4455543 34789999999999754 1111 111 1334333488899999999976443
No 120
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.90 E-value=28 Score=37.96 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCCCCChHHHHHHHHHcCCC--EEEEceecCccCCCCCeeeecc--cchHHHHHHHHHHcCcEEEEecCccccc
Q 004525 52 PRSVPGMWPGLVQQAKEGGVN--TIESYVFWNGHELSPGKYYFGG--RFNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 52 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
.....+.-++.++++++.|+. +|.+=+.|- ..-|.|.|+- --|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 345677789999999999965 555444453 3356666643 2489999999999999999999888864
No 121
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=52.68 E-value=22 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 004525 96 FNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 96 ~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999875
No 122
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=51.91 E-value=29 Score=38.53 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred EEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCe-eeecccchHHHHHHHHHHcCcEEEEecCcccccc
Q 004525 45 ISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGK-YYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAE 123 (747)
Q Consensus 45 ~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 123 (747)
+|=++.+.|.+.+.=..-|++|...|+..|-| ++|.|.+.. --|. -+.++++.|++.||+||+-.-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45577888888888888999999999998766 677777642 1122 678889999999999999998876555
Q ss_pred c
Q 004525 124 Y 124 (747)
Q Consensus 124 w 124 (747)
.
T Consensus 77 l 77 (360)
T COG3589 77 L 77 (360)
T ss_pred c
Confidence 3
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.40 E-value=27 Score=46.56 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEE-ceecCccCCCCCe---e----------eecccchHHHHHHHHHHcCcEEEEecCc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIES-YVFWNGHELSPGK---Y----------YFGGRFNLVKFIKIIQQARMYMILRIGP 118 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~la~~~GL~Vilr~GP 118 (747)
+-+.|.+.|.-+|++|+++|-+ .|+ +..+|. | .|.+..++.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3455899999999999999986 333 222221 1 3556789999999999999999986644
No 124
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=51.28 E-value=44 Score=37.27 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=58.7
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecc--cchHHHHHH
Q 004525 27 NVTYDSRSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGG--RFNLVKFIK 103 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~ 103 (747)
.|.+. .+.+.|.+++++.| +--+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+
T Consensus 81 ~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~ 151 (335)
T PRK08673 81 VVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAE 151 (335)
T ss_pred EEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHH
Confidence 34443 36777788888888 4444 55666777888888999999999995 4333367765 556777777
Q ss_pred HHHHcCcEEEEec
Q 004525 104 IIQQARMYMILRI 116 (747)
Q Consensus 104 la~~~GL~Vilr~ 116 (747)
.|++.||.++-.+
T Consensus 152 ~~~~~Gl~v~tev 164 (335)
T PRK08673 152 AREETGLPIVTEV 164 (335)
T ss_pred HHHHcCCcEEEee
Confidence 7899999888655
No 125
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=49.00 E-value=16 Score=36.38 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.4
Q ss_pred EEeccCCceEEEEEcCccccccc
Q 004525 646 GLDMLKMGKGLAWLNGEEIGRYW 668 (747)
Q Consensus 646 ~Ld~~g~gKG~vwVNG~~iGRYW 668 (747)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 46677778889999999999743
No 126
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=48.48 E-value=1.3e+02 Score=31.74 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCCCCe-eeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCC
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGK-YYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIP 137 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 137 (747)
-++.++++.++|++.|+.. ..+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 4578999999999999983 33332210 0222 236888999999999987542 3431
Q ss_pred CeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeec
Q 004525 138 GTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQ 180 (747)
Q Consensus 138 ~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 180 (747)
+.+.+.|+..+++..+++++.++..+. + |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 123456777777777777777776552 2 45566554
No 127
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=46.97 E-value=31 Score=43.26 Aligned_cols=21 Identities=0% Similarity=0.327 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 004525 96 FNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 96 ~dl~~fl~la~~~GL~Vilr~ 116 (747)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999864
No 128
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.21 E-value=35 Score=37.41 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=47.9
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCC-----CCCeeeeccc--chHHHHHHHHHHcCcEEEEecCcccc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHEL-----SPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
..+..++.++++++.||-+=.+.+=+..+.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 3456788999999999875555543333331 2346666532 38999999999999999998877775
No 129
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=46.08 E-value=77 Score=34.03 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=69.2
Q ss_pred eEEEEEEeeCCCCCCCC-hH---HHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEE--EEe
Q 004525 42 ELIISAAIHYPRSVPGM-WP---GLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM--ILR 115 (747)
Q Consensus 42 ~~~~sG~~hy~r~~~~~-W~---~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr 115 (747)
.+.+++..|+.+.+... -+ ++|++-.++|.+.+-|- =.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ----------~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ----------LFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec----------cccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788999888754432 22 34555567899988883 335555 8899999999997654 444
Q ss_pred cCccccc-------ccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 116 IGPFVAA-------EYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 116 ~GPyi~a-------Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
.-|-... +|..-.+|.|+.+.=. ....+....+++--++..+++..+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332 3566678999876100 01112235566667777777777763
No 130
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.14 E-value=41 Score=36.85 Aligned_cols=65 Identities=6% Similarity=0.042 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCC---CCCeeeeccc--chHHHHHHHHHHcCcEEEEecCcccc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHEL---SPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
+.-++.++++++.||-+=.+.+-+....- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 35678899999999976665553322221 1234555422 48999999999999999998888874
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.94 E-value=94 Score=32.71 Aligned_cols=114 Identities=8% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHHcCCCEEEEceecCccCCCCCeeeec-ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccC
Q 004525 66 AKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRND 144 (747)
Q Consensus 66 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~ 144 (747)
+-...|..|-.-. -.. ...|...+. ...++..+++.|++.|++|++..|= |..+. +. . + ..
T Consensus 18 ~~~~~lThv~~~f-~~i--~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~-~---~---~~ 79 (253)
T cd06545 18 IDFSKLTHINLAF-ANP--DANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT-A---A---LN 79 (253)
T ss_pred CChhhCCeEEEEE-EEE--CCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch-h---h---hc
Confidence 3344455554422 122 235666664 3357889999999999999998861 21111 11 0 1 12
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHhcC
Q 004525 145 TEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQN 211 (747)
Q Consensus 145 d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g 211 (747)
++. .-+++++.|.+.++++++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 80 ~~~---~r~~fi~~lv~~~~~~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 80 DPA---KRKALVDKIINYVVSYNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred CHH---HHHHHHHHHHHHHHHhCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 333 234678888888886543 3456666765320 1112245555666555443
No 132
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=44.77 E-value=33 Score=38.04 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=54.1
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chH--HHHHHHHHHcCcEEEEecCcccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNL--VKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl--~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
+|.+|. ..+..++.++++++.||..=.+.+=+..++. -+.|.|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 4566788999999999976555543333332 466766653 377 99999999999999999999997
Q ss_pred cc
Q 004525 122 AE 123 (747)
Q Consensus 122 aE 123 (747)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 54
No 133
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.54 E-value=34 Score=37.89 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=52.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCcccccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAAE 123 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 123 (747)
+|..|. ..+.-++.++++++.||..=.+.+=+.. ....+.|.|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 355554 3455678899999999976555443322 134566766543 3899999999999999999999999754
No 134
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.92 E-value=1.3e+02 Score=29.45 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHcCCCEEEEcee--cCccCC----CCCeeeecccchHHHHHHHHHHcCcEEE-EecCcccccccCCCCCC
Q 004525 58 MWPGLVQQAKEGGVNTIESYVF--WNGHEL----SPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAAEYNYGGIP 130 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~--Wn~hEp----~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P 130 (747)
..++..+.++..|+..+....+ |..... ...+ .-.....+.+.+++|++.|...+ +.+|. .+
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~~ 96 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------YP 96 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------ES
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------cc
Confidence 3556777888999997776544 443211 1111 11123488999999999999865 55442 00
Q ss_pred cccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccccc
Q 004525 131 VWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYY 188 (747)
Q Consensus 131 ~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~ 188 (747)
.. .......-++.+.+.+++|+++.++++ +.+-+||..+..
T Consensus 97 ---~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 97 ---SG-----PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp ---SS-----TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ---cc-----cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 00 011233566777778888888887542 345688888753
No 135
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=43.16 E-value=1.1e+02 Score=28.63 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=42.5
Q ss_pred EEEEEEeeecCcchhhhcCCCCCeEEecccceEEEEEECCEEEEEEeCCCC-----CCCceeeeccccCCC-ccEEEEEE
Q 004525 481 YLWYTTSIIVNENEEFLKNGSRPVLLIESKGHALHAFANQELQGSASGNGT-----HPPFKYKNPISLKAG-KNEIALLS 554 (747)
Q Consensus 481 yl~Yrt~i~~~~~~~~~~~~~~~~L~i~~~~d~a~vfvng~~iG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 554 (747)
.+.|++.|..+.++ .-++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G-------~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETG-------TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSE-------EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCc-------eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 45688888776443 1233333 6788999999999977664432 001122233445555 78888887
Q ss_pred eccCc
Q 004525 555 MTVGL 559 (747)
Q Consensus 555 en~Gr 559 (747)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 66554
No 136
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.93 E-value=38 Score=37.21 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=51.8
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+|..|. ..+..++.++++++.+|-.=.+.+=+.... .-+.|+|+.. -|..+|++.+++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 455554 455678899999999987555544322222 2356666532 489999999999999999998888864
No 137
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=40.72 E-value=1.2e+02 Score=33.64 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=53.9
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCcccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVA 121 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 121 (747)
+|.+|. ..+..++.++++++.+|-.=.+++=|.+++ .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 555664 556688899999999986555555454443 3466776543 37899999999999999999989997
No 138
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=39.87 E-value=1.1e+02 Score=31.68 Aligned_cols=91 Identities=7% Similarity=-0.002 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec-ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcc
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVW 132 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 132 (747)
..+.+++..++.++++|+..+.+|..... ....|..+ |..|=..-+++|+++|+. + |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEE
Confidence 35788999999999999999999988765 22223333 678889999999998872 1 23333
Q ss_pred cCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhc
Q 004525 133 LHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKRE 166 (747)
Q Consensus 133 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~ 166 (747)
+.-+.+. .+..+...+..|++.+.+.|+..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 3322221 33347788999999999988753
No 139
>PLN03059 beta-galactosidase; Provisional
Probab=39.73 E-value=1e+02 Score=38.47 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=31.8
Q ss_pred CCCceEEEEEEECCCCC-------CCeEEeccCC-ceEEEEEcCcccccccc
Q 004525 626 NQPLTWYKAVVKQPPGD-------EPIGLDMLKM-GKGLAWLNGEEIGRYWP 669 (747)
Q Consensus 626 ~~~~~wYk~~F~~~~~~-------d~~~Ld~~g~-gKG~vwVNG~~iGRYW~ 669 (747)
..+..||+++|+++... ++ .|.+.+. -+.+|||||.-+|.-.-
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~ 518 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYG 518 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEe
Confidence 34789999999987643 23 3666554 35899999999998664
No 140
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=60 Score=35.56 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee---cCccCCCCC--------eeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF---WNGHELSPG--------KYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G--------~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+..-..+++.+|..|+|++-+=+= =++.=|... +=.|- |+..||+.|+|.||++|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 4556788999999999999865221 011111111 11233 99999999999999999997
No 141
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=38.95 E-value=55 Score=34.96 Aligned_cols=50 Identities=22% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-.+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 666666555422 23344444459999999999998
No 142
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=38.87 E-value=13 Score=32.58 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQA 108 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~ 108 (747)
....|-.-+|.+-. .||.|-.|||. +|.+||++|.|.
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 34458887777654 58999999999 999999999873
No 143
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.68 E-value=85 Score=34.53 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=79.2
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEcee--cCcc---CC------------------------CCCeeeecccchHH
Q 004525 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVF--WNGH---EL------------------------SPGKYYFGGRFNLV 99 (747)
Q Consensus 49 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h---Ep------------------------~~G~~dF~g~~dl~ 99 (747)
=||+ +.+..++.|+.|...++|+++.++- |.+- .| ..|.|. ..++.
T Consensus 11 R~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ 85 (326)
T cd06564 11 RKYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFK 85 (326)
T ss_pred CCCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHH
Confidence 3554 6788899999999999999997653 3321 11 122232 35999
Q ss_pred HHHHHHHHcCcEEEEecCcccccccCCCCC-CcccCcCCCeEecc---------CChhHHHHHHHHHHHHHHHHhhcccc
Q 004525 100 KFIKIIQQARMYMILRIGPFVAAEYNYGGI-PVWLHYIPGTVFRN---------DTEPFKYHMQKFMTLIVDMMKREKLF 169 (747)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~Rt---------~d~~y~~~~~~~~~~l~~~l~~~~~~ 169 (747)
.+++.|+++|+.||--+ +.=|. =+|+...|++..+. -|+ -.+++-++++.|+..+.+ ++
T Consensus 86 eiv~yA~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~~--~f 154 (326)
T cd06564 86 ELIAYAKDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYLD--GF 154 (326)
T ss_pred HHHHHHHHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHHH--hc
Confidence 99999999999998544 32221 23444444332221 111 123445555555555552 22
Q ss_pred cccCCceEeeccc-ccccccccccCcccHHHHHHHHHHHHhcCCc
Q 004525 170 ASQGGPIILAQVE-NEYGYYESFYGEGGKRYALWAAKMAVAQNIG 213 (747)
Q Consensus 170 ~~~gGpII~~QIE-NEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~ 213 (747)
...++.| +|- -|+-... .....-..|++.+.+.+++.|..
T Consensus 155 -~~~~~~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 155 -NPKSDTV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred -CCCCCEE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCe
Confidence 1112332 331 1221100 00112356888888888888754
No 144
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.03 E-value=57 Score=36.28 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=50.0
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEce----------ecCccCCC---------CCeeeecc---cchHHHHHH
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYV----------FWNGHELS---------PGKYYFGG---RFNLVKFIK 103 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~dF~g---~~dl~~fl~ 103 (747)
+|..|. ..+.-++.++++++.||..=.+++ .|+-..-. =+.++|.. --|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 345578899999999997655544 34432211 13333431 128999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 004525 104 IIQQARMYMILRIGPFVA 121 (747)
Q Consensus 104 la~~~GL~Vilr~GPyi~ 121 (747)
.+++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 145
>PLN02877 alpha-amylase/limit dextrinase
Probab=37.20 E-value=59 Score=41.13 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 004525 96 FNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 96 ~dl~~fl~la~~~GL~Vilr~ 116 (747)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999875
No 146
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=36.83 E-value=47 Score=37.04 Aligned_cols=114 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred CEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHH
Q 004525 72 NTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYH 151 (747)
Q Consensus 72 N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~ 151 (747)
+.|.+.|+|+.+--+. -=...++.|+++|++|+ +=|.-||+ +-+.|+.. +-.++ .+.
T Consensus 31 ~yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vl----gti~~e~~--~~~~~~~~-----lL~~~---~~~ 87 (339)
T cd06547 31 QYVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVL----GTFIFEWT--GQVEWLED-----FLKKD---EDG 87 (339)
T ss_pred hhhheeecccCccccC---------CCcHHHHHHHhcCCeEE----EEEEecCC--CchHHHHH-----HhccC---ccc
Q ss_pred HHHHHHHHHHHHhhcccccccCCceEeecccccc-cccccccCcccHHHHHHHHHHHHhc--CCccceE
Q 004525 152 MQKFMTLIVDMMKREKLFASQGGPIILAQVENEY-GYYESFYGEGGKRYALWAAKMAVAQ--NIGVPWI 217 (747)
Q Consensus 152 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEy-g~~~~~~g~~~~~y~~~l~~~~~~~--g~~vP~~ 217 (747)
..++.++|++..+.+++ +| +.+-+||.. ..... ..-.+|++.|++.+++. +..|-|+
T Consensus 88 ~~~~a~kLv~lak~yGf---DG---w~iN~E~~~~~~~~~---~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 88 SFPVADKLVEVAKYYGF---DG---WLINIETELGDAEKA---KRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred chHHHHHHHHHHHHhCC---Cc---eEeeeeccCCcHHHH---HHHHHHHHHHHHHHhhcCCCcEEEEE
No 147
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=36.73 E-value=65 Score=34.20 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-.+++|++|++.|-+ -|..++--|.- .+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII-----GHSERRQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 356799999999988 56555544443 356888888999999999999998
No 148
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=36.71 E-value=1.1e+02 Score=25.16 Aligned_cols=45 Identities=29% Similarity=0.259 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
...++.++++|+.|++.|.+= -|. .+. ...++.+++++.||.||.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 347899999999999999872 222 222 457888999999998874
No 149
>PRK09989 hypothetical protein; Provisional
Probab=36.36 E-value=67 Score=33.73 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
-.+++|++++++|+..|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999843321 2467888889999999874
No 150
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.35 E-value=67 Score=34.79 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=49.0
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEcee--cCccC------CCCCeeeeccc--chHHHHHHHHHHcCcEEEEe
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVF--WNGHE------LSPGKYYFGGR--FNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hE------p~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr 115 (747)
+|.+|. +.+.-++.++++|+.||-+=.+++= |.... -.-+.|.|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444553 4566788999999999976555543 43321 12346766532 49999999999999999987
Q ss_pred cCcc
Q 004525 116 IGPF 119 (747)
Q Consensus 116 ~GPy 119 (747)
+=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 7554
No 151
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=36.01 E-value=3.5e+02 Score=29.55 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=78.1
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccC
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLH 134 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (747)
.-+.-+.+|+.++.-+. .|++|- +.-+-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999998887 999973 223478889999999999999876 222
Q ss_pred cCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHhcCCcc
Q 004525 135 YIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQNIGV 214 (747)
Q Consensus 135 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 214 (747)
. + -. ..+++ .++..+.+ +..--.|-.+-|.||-=.-...-.+.--+|+...|.++++.|.++
T Consensus 111 d--d-------~~--~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--D-------IH--DAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--c-------hh--hhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 1 11 12221 23333331 111236888999999532110001134589999999999999999
Q ss_pred ceEEeccc
Q 004525 215 PWIMCQQF 222 (747)
Q Consensus 215 P~~~~~~~ 222 (747)
|..+.+++
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 98887664
No 152
>PRK09267 flavodoxin FldA; Validated
Probab=36.01 E-value=1.9e+02 Score=28.33 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=48.5
Q ss_pred ECCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 37 INGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 37 idGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
+..-..++++...|....++..|.+-+.+++...++-..+.+| .......-.-.|. .-+..+.+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 3445568899999987877888999999888877776677666 2221111001122 245667777888897654
No 153
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.92 E-value=1.5e+02 Score=32.39 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----cCc-cCCC--CCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNG-HELS--PGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~-hEp~--~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.+.-++.++.|...|+|.+..|+- +.- .|-. +|.|. ..++.++++.|+++|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecC
Confidence 3466789999999999999998752 321 1111 33443 3499999999999999999654
No 154
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=35.46 E-value=60 Score=35.92 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=50.7
Q ss_pred eeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 49 IHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 49 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+|..|. ..+..++.++++++.||-.=.+.+=+.... .-+.|+|+-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455554 445568899999999997544443333222 3445666532 378999999999999999988888864
No 155
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.77 E-value=60 Score=37.09 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEE-ceec---CccCCCCCee-----eecccchHHHHHHHHHHcCcEEEEec
Q 004525 61 GLVQQAKEGGVNTIES-YVFW---NGHELSPGKY-----YFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~-yv~W---n~hEp~~G~~-----dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+.|.-+|.+|+++|-+ +++= ..|.-..--| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888899999999964 3331 1222110000 57778899999999999999999753
No 156
>PLN03036 glutamine synthetase; Provisional
Probab=34.71 E-value=91 Score=36.00 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCCeeeec-cc---------chHHHHH--HHHHHcCcEEEEecCcccccccCCC
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GR---------FNLVKFI--KIIQQARMYMILRIGPFVAAEYNYG 127 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~---------~dl~~fl--~la~~~GL~Vilr~GPyi~aEw~~G 127 (747)
++..+.+.++|++.-.+ .||--||||.|. +. ..+-+++ ++|+++|+.+-+-|=|+. ++|+.-
T Consensus 233 ~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~GS 306 (432)
T PLN03036 233 DAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNGA 306 (432)
T ss_pred HHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCCC
Confidence 34555778999999988 999999999885 21 2232333 668999999998888853 566655
Q ss_pred CC
Q 004525 128 GI 129 (747)
Q Consensus 128 G~ 129 (747)
|+
T Consensus 307 Gm 308 (432)
T PLN03036 307 GC 308 (432)
T ss_pred Cc
Confidence 54
No 157
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.69 E-value=48 Score=29.21 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=24.6
Q ss_pred cCCceEeeccccc-cccccccc----Cc-ccHHHHHHHHHH---HHhcCCccceEE
Q 004525 172 QGGPIILAQVENE-YGYYESFY----GE-GGKRYALWAAKM---AVAQNIGVPWIM 218 (747)
Q Consensus 172 ~gGpII~~QIENE-yg~~~~~~----g~-~~~~y~~~l~~~---~~~~g~~vP~~~ 218 (747)
+...|.+|+|-|| .++....+ +. ....|.+||+++ +|+.+-+.|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3457999999999 55321111 11 235566666655 455667777653
No 158
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=33.40 E-value=1.3e+02 Score=34.67 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=62.6
Q ss_pred eeCCCC--CCCChHHHHHHHHHcCCCEEEE-ceecCcc--CC--CCCeeeec-----c-----cchHHHHHHHH-HHcCc
Q 004525 49 IHYPRS--VPGMWPGLVQQAKEGGVNTIES-YVFWNGH--EL--SPGKYYFG-----G-----RFNLVKFIKII-QQARM 110 (747)
Q Consensus 49 ~hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~h--Ep--~~G~~dF~-----g-----~~dl~~fl~la-~~~GL 110 (747)
-+.+++ +-+.|++.|+.++++|+|+|.. ++----. .| ...+..|+ . ..++.+++..+ +++||
T Consensus 12 Tvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~l 91 (423)
T PF14701_consen 12 TVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGL 91 (423)
T ss_pred EEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCc
Confidence 344443 4468999999999999999984 2211000 00 01111111 1 14999999888 57999
Q ss_pred EEEEecCcccccccCCCCC-CcccCcCCCeEeccCChhHHHHH---HHHHHHHHHHHh
Q 004525 111 YMILRIGPFVAAEYNYGGI-PVWLHYIPGTVFRNDTEPFKYHM---QKFMTLIVDMMK 164 (747)
Q Consensus 111 ~Vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~Rt~d~~y~~~~---~~~~~~l~~~l~ 164 (747)
.++.-.= |+.-.. =.||..+|+.-.=..+.++|+.+ ++.+.++...|.
T Consensus 92 l~~~DvV------~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 92 LSMTDVV------LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred eEEEEEe------eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9764431 332222 36999999864444455666543 334444444443
No 159
>PRK14566 triosephosphate isomerase; Provisional
Probab=32.91 E-value=1.1e+02 Score=32.95 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-.+++|++|++.|-+ -|..++..|.= .+..+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 356899999999988 56655555542 244566678889999999999998
No 160
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=32.90 E-value=4.9e+02 Score=28.88 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeE
Q 004525 61 GLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTV 140 (747)
Q Consensus 61 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~ 140 (747)
..+...++.|.+||-.-- - +| =.||..+..+.+++.||.+|..+|+|.-+.|+ .|+...+
T Consensus 52 ~e~~~~~a~Gg~TIVD~T-----~--~~-----~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDAT-----N--IG-----IGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeCC-----c--cc-----cCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 456666778998886411 1 11 13699999999999999999999999988875 6665433
Q ss_pred eccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHhc-CCccceEEe
Q 004525 141 FRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALWAAKMAVAQ-NIGVPWIMC 219 (747)
Q Consensus 141 ~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~l~~~~~~~-g~~vP~~~~ 219 (747)
++.+...+.+.++. .+ .|+=|..=|=-|-|.+.. =...=.+.|+..++++ -.++|+.+-
T Consensus 112 -----------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~~----iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 112 -----------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSPA----ITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred -----------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCccc----CCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 34455555555542 22 122222222234444321 1122234555555554 457898765
Q ss_pred cc
Q 004525 220 QQ 221 (747)
Q Consensus 220 ~~ 221 (747)
.+
T Consensus 172 t~ 173 (316)
T COG1735 172 TP 173 (316)
T ss_pred cc
Confidence 54
No 161
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=32.47 E-value=86 Score=32.50 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
-..++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456899999999888 455444 5555 68889999999999999987
No 162
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=32.43 E-value=65 Score=39.39 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCEEEE-ceecCccCCCC---C-----------------eeeecc-----cchHHHHHHHHHHcCcEEEEe
Q 004525 62 LVQQAKEGGVNTIES-YVFWNGHELSP---G-----------------KYYFGG-----RFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----------------~~dF~g-----~~dl~~fl~la~~~GL~Vilr 115 (747)
.|.-+|.+|+++|+. +|+.-..|+.. | .|--+. .+.+..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999996 67765555543 2 222222 247888899999999999986
Q ss_pred c
Q 004525 116 I 116 (747)
Q Consensus 116 ~ 116 (747)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 163
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.29 E-value=1.2e+02 Score=32.95 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----cCccCC----------------CCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNGHEL----------------SPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
+.+..++.++.|...++|+.+.++- |.+--+ ..|.|.- .++.++++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 5677899999999999999999886 754311 1234444 4999999999999999986
Q ss_pred ec
Q 004525 115 RI 116 (747)
Q Consensus 115 r~ 116 (747)
-+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 54
No 164
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=32.22 E-value=70 Score=32.32 Aligned_cols=88 Identities=14% Similarity=0.265 Sum_probs=54.5
Q ss_pred EEEeeCCCCC-----CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeee--ecc-cchHHHHHHHHHHcCcEEEEecC
Q 004525 46 SAAIHYPRSV-----PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYY--FGG-RFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 46 sG~~hy~r~~-----~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d--F~g-~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|++..+++|.++++-..
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3889998753 455777788888765432 112334444334322 111 14678999999999999999888
Q ss_pred ccccc----cc---CCCCCCcccCcC
Q 004525 118 PFVAA----EY---NYGGIPVWLHYI 136 (747)
Q Consensus 118 Pyi~a----Ew---~~GG~P~WL~~~ 136 (747)
++--. -. +...+|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 75221 11 145689999764
No 165
>PLN02784 alpha-amylase
Probab=32.04 E-value=64 Score=40.26 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCC--eee-------ecccchHHHHHHHHHHcCcEEEEec
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPG--KYY-------FGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------F~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+.+..++++|+++|-+.=+-....+ .| .+| |....+|..+++.|+++||+||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677889999999987432211111 11 122 3345799999999999999999864
No 166
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.01 E-value=15 Score=37.11 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=44.2
Q ss_pred eEEEEEEeeCCCC---CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEe
Q 004525 42 ELIISAAIHYPRS---VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 42 ~~~~sG~~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
...-+|--.|.|+ .|-.-.+ -+.++|++.+-+=. ...--.--|||-...+|..|.++|++|||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccHH---HHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445666667774 3433333 45678888654300 1222234689988889999999999999998763
No 167
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.28 E-value=93 Score=35.46 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCcccccccC
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAAEYN 125 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (747)
.+...+.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|...+++.+++.|+++++..-|+|+-+-.
T Consensus 42 ~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 42 QDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred HHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 45567899999999997666655433222 3445555432 389999999999999999999998876654
No 168
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.76 E-value=39 Score=32.50 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccC-CCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhc
Q 004525 96 FNLVKFIKIIQQARMYMILRIGPFVAAEYN-YGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKRE 166 (747)
Q Consensus 96 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~-~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~ 166 (747)
.||.-||++|++.|+.|++=.-| +++.|- +-|+| .+.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 39999999999999998765544 555553 11111 234466788888887753
No 169
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.70 E-value=1.3e+02 Score=33.78 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.|..-++++++.|++.|..+...-.-....+. + -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999988765432222211111 1 23688999999999999765
No 170
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=30.61 E-value=88 Score=33.20 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec-----cc-----chHHHHH--HHHHHcCcEEEEecCccc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-----GR-----FNLVKFI--KIIQQARMYMILRIGPFV 120 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-----g~-----~dl~~fl--~la~~~GL~Vilr~GPyi 120 (747)
+..++.++.+.++|+++-.. .||-.||||... +. ..+.+++ ++|+++||.+-+-|=|+.
T Consensus 69 ~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 69 DFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 34678889999999999988 999999999764 11 1222222 568999999998887754
No 171
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=30.42 E-value=1.2e+02 Score=29.36 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=46.2
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec-----ccchHHHHHHHHHHcCcEEEEecCcccccccCCCCC
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-----GRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGI 129 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-----g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~ 129 (747)
.+.+.+..++.++++|+..+.+|.....+ ..+|+ |..|=..-+..|++.|+. -|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~-----~~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE-----TSDFTYGYAQGVADARDAVAAARALGFP---------------AGT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc-----ccccccHHHHHHHHHHHHHHHHHHcCCC---------------CCC
Confidence 46788999999999999999998876222 22332 567888999999999983 123
Q ss_pred CcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhc
Q 004525 130 PVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKRE 166 (747)
Q Consensus 130 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~ 166 (747)
|-++--+- -..+..+.+.+..|++.+...|+..
T Consensus 96 ~IYfavD~----d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 96 PIYFAVDY----DATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp EEEEE--T----S-B-HH-------HHHHHHHHHGGG
T ss_pred EEEEEeec----CCCchhhhhHHHHHHHHHHHHHhhC
Confidence 33443221 2256778888888999998888753
No 172
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.14 E-value=1.1e+02 Score=24.43 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEE
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM 112 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V 112 (747)
|..-.+.+.-+.+.|+|.++++. +...+.....+.|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34457788889999999998876 3333234455555433 4889999999999765
No 173
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.75 E-value=76 Score=33.94 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEceecC--ccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 60 PGLVQQAKEGGVNTIESYVFWN--GHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
++.++++|++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999988864410 111111223444 566778899999998643
No 174
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=29.51 E-value=60 Score=33.25 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=40.3
Q ss_pred eCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeee-ecccchHHH-HHHHHHHcCcEEEEecCccccc
Q 004525 50 HYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYY-FGGRFNLVK-FIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 50 hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d-F~g~~dl~~-fl~la~~~GL~Vilr~GPyi~a 122 (747)
-+.|++.+|--..-+.+|+.||.++-.---=..|-...=-|- -.| .+++ .++| +..-++|+||||..|-
T Consensus 102 gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE~~v~eL--~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 102 GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVERDVIEL--DFKHIIILRPGPLLGE 172 (238)
T ss_pred ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhhhhhhhc--cccEEEEecCcceecc
Confidence 356788999999999999999988765333333333221111 112 1111 1111 2234689999998765
No 175
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.36 E-value=40 Score=37.01 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=67.3
Q ss_pred EeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCcc
Q 004525 41 RELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPF 119 (747)
Q Consensus 41 ~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPy 119 (747)
..++++-+..--+.| +.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|..|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS--S
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccCCCc
Confidence 345555555545555 77999999999999999998 887433 77899999999999876 554221
Q ss_pred cccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHH
Q 004525 120 VAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRY 199 (747)
Q Consensus 120 i~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y 199 (747)
- ++.|- .--..-.+++|++= |.- ++.+|.+
T Consensus 99 ~--------~~~~~---------------------------------g~~~~~~~~rv~~v-----GTD----cavGK~t 128 (301)
T PF07755_consen 99 D--------LPVAS---------------------------------GRIREVKAKRVLTV-----GTD----CAVGKMT 128 (301)
T ss_dssp S----------------------------------------------SGGGG-SSEEEEEE-----ESS----SSSSHHH
T ss_pred c--------ccccc---------------------------------CccccCCCCEEEEE-----ccC----ccccHHH
Confidence 1 00000 00001235777762 542 2467877
Q ss_pred H-HHHHHHHHhcCCccceEEecc
Q 004525 200 A-LWAAKMAVAQNIGVPWIMCQQ 221 (747)
Q Consensus 200 ~-~~l~~~~~~~g~~vP~~~~~~ 221 (747)
. ..|.+.+++.|++.-++-.+|
T Consensus 129 Tal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 129 TALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHHcCCCceEEecCC
Confidence 4 567888999999987775544
No 176
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.82 E-value=1.1e+02 Score=35.39 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=46.0
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 49 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.-|.+.|.+.-++.++++.+.|+..|++.+.-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666788888999999999999999998876643 258889999999999886554
No 177
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.74 E-value=55 Score=34.49 Aligned_cols=55 Identities=18% Similarity=-0.037 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCC----CeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSP----GKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
.+++.++.++++|..+|.+ |..+.... -.++.. ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 4566788999999999966 32232211 111111 1368888999999999999887
No 178
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.67 E-value=67 Score=35.91 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=43.5
Q ss_pred CCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 53 RSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 53 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
|.+...-.-..++++++|-++|.+.++|.-.++.+ -+-.-..+|.++.+.|+++||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54443333336789999999999999999553310 011123489999999999999998864
No 179
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.44 E-value=8.5e+02 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhhhhcc
Q 004525 267 PHRPSEDIAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRNPKWGHLKELHGAIKLCEHA 346 (747)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~~tSYDy~Apl~E~G~~~tpky~~lr~l~~~~~~~~~~ 346 (747)
..++++.+...+....++|++++ +=- +.+.+|.+..+.-..||+++..++..+++
T Consensus 289 ~~ks~~~li~~l~~~vs~ngnlL---LNi----------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 289 KYKSADELIDILVDSVSRNGNLL---LNI----------------------GPDPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp GS--HHHHHHHHHHHHTBTEEEE---EEE-------------------------TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred CcCCHHHHHHHHHHHhccCceEE---Eec----------------------CCCCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 45688888888888888888752 111 22356777777888999999999877653
No 180
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=28.34 E-value=84 Score=35.68 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=68.4
Q ss_pred HHHhhhhcccccceEEEeCCcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHc-CCCEEEEceecCccCCCCCeee
Q 004525 14 IFFSSSITYCFAGNVTYDSRSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEG-GVNTIESYVFWNGHELSPGKYY 91 (747)
Q Consensus 14 ~~~~~~~~~~~~~~v~~~~~~f~idGk~~~~~sG~~hy~r~-~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~d 91 (747)
+.+++.+. -+..|-+-.-.|-+..-+-...+=|+.|+-. |.+.||-+|..+.++ -=||+.+-| =|=+.|--++|+
T Consensus 141 ~~i~~LA~--p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys 217 (447)
T KOG0259|consen 141 LAISSLAN--PGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYS 217 (447)
T ss_pred HHHHHhcC--CCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCccccc
Confidence 33444443 3334544444555554444455556666654 888899999999985 678998855 477888889998
Q ss_pred ecccchHHHHHHHHHHcCcEEEE
Q 004525 92 FGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 92 F~g~~dl~~fl~la~~~GL~Vil 114 (747)
-. -|.+.+++|+++|+-||.
T Consensus 218 ~~---HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 218 ED---HLKKIAETAKKLGIMVIA 237 (447)
T ss_pred HH---HHHHHHHHHHHhCCeEEe
Confidence 87 999999999999999985
No 181
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=28.24 E-value=6.2e+02 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
++.++.|+++|++++.+ =|-|| |||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~l---aNNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSL---ANNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEe---ccCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 46788999999999988 12344 5543 3357777788888887654
No 182
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.01 E-value=2.5e+02 Score=29.18 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHcCCC-EEEE--ceecCccCC---CCC--eeee-----------cc--cchHHHHHHHHHHcCcEEEEe
Q 004525 57 GMWPGLVQQAKEGGVN-TIES--YVFWNGHEL---SPG--KYYF-----------GG--RFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N-~V~~--yv~Wn~hEp---~~G--~~dF-----------~g--~~dl~~fl~la~~~GL~Vilr 115 (747)
+.-.+.++++|+.|+. +|+| |+.|...+. .-. -+|+ +| +..+.+.|+.+.++|..+.+|
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR 133 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR 133 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5557889999999986 4444 555532221 111 2232 22 234556677788889888888
Q ss_pred cCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccc-----------c
Q 004525 116 IGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVEN-----------E 184 (747)
Q Consensus 116 ~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN-----------E 184 (747)
. |. +|++ ++++.-++++.+|++.+. +. +|-+..-.+ +
T Consensus 134 ~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~~ 181 (213)
T PRK10076 134 L-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGKT 181 (213)
T ss_pred E-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCCc
Confidence 7 22 3554 346666666666665541 11 121111111 2
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCcc
Q 004525 185 YGYYESFYGEGGKRYALWAAKMAVAQNIGV 214 (747)
Q Consensus 185 yg~~~~~~g~~~~~y~~~l~~~~~~~g~~v 214 (747)
|-.. ....+..+.|+++++.+++.|+.+
T Consensus 182 y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 182 WSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2110 112467899999999999998876
No 183
>PLN02429 triosephosphate isomerase
Probab=26.97 E-value=1.1e+02 Score=33.82 Aligned_cols=46 Identities=24% Similarity=0.166 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHH----HHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKI----IQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~l----a~~~GL~Vilr~G 117 (747)
-.+++|++|++.|-+ -|..++-.|. ..++++.. |.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii-----GHSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL-----GHSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe-----CccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 355789999998888 5555555444 23555555 9999999999998
No 184
>PRK15492 triosephosphate isomerase; Provisional
Probab=26.74 E-value=1.2e+02 Score=32.58 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-..++|++|++.|-+ -|..++-.|.= .+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 56666655542 244566677889999999999998
No 185
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.43 E-value=76 Score=33.67 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=33.0
Q ss_pred EECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEE
Q 004525 36 IINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIES 76 (747)
Q Consensus 36 ~idGk~~~~~sG~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~ 76 (747)
.+.|+++..+.|..|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 5689999999999997765 4444578899999999987643
No 186
>PRK14565 triosephosphate isomerase; Provisional
Probab=26.11 E-value=1.2e+02 Score=32.08 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-.+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999888 565555444433 22333334889999999999998
No 187
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=25.84 E-value=1.6e+02 Score=35.90 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=50.0
Q ss_pred HHHHHHcCCCEEEE-cee-----cC--ccCCCCCeee---------ecccchHHHHHHHHHHcCcEEEEecC--------
Q 004525 63 VQQAKEGGVNTIES-YVF-----WN--GHELSPGKYY---------FGGRFNLVKFIKIIQQARMYMILRIG-------- 117 (747)
Q Consensus 63 l~k~ka~G~N~V~~-yv~-----Wn--~hEp~~G~~d---------F~g~~dl~~fl~la~~~GL~Vilr~G-------- 117 (747)
++.++.+|+++|-+ .++ |. ..--.-|-|| |....|++++++.|+++||+||+-.=
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 34688999999986 232 43 2222235565 23347999999999999999996532
Q ss_pred cccccccCCCCCCccc
Q 004525 118 PFVAAEYNYGGIPVWL 133 (747)
Q Consensus 118 Pyi~aEw~~GG~P~WL 133 (747)
||.-||.+.+-+|.|.
T Consensus 160 dF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 160 DFRLAELAHGDYPGLY 175 (688)
T ss_pred chHHHhhcCCCCCCce
Confidence 4777888888888887
No 188
>PLN02561 triosephosphate isomerase
Probab=25.43 E-value=1.3e+02 Score=32.29 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-..++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999999988 566666555433 45667777889999999999998
No 189
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=25.01 E-value=1.1e+02 Score=32.56 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCccccc
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAA 122 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~a 122 (747)
.-++.++++|++|+ -|+.+| +|.+ ..++.|++.|-..| |-+|||..+
T Consensus 114 ~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 114 KLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 35678889999999 677744 5554 56899999999976 999999876
No 190
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.97 E-value=1.4e+02 Score=32.08 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-..++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 346899999999998 6666665553 2356788889999999999999998
No 191
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=24.95 E-value=1.1e+02 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=44.5
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecc----cchHHHHHHHHHHcCcEEEEecCcccccccC
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGG----RFNLVKFIKIIQQARMYMILRIGPFVAAEYN 125 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g----~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (747)
-+++.+.+++||+..= ++|+-.--..+.=||+- -.++..|++-.++.|+++|+-+-|+|..--.
T Consensus 313 ~~dvv~~~~~agiPld---~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLD---VIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHcCCCcc---eeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 4789999999999822 22333333333334542 2368899999999999999999898865444
No 192
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=24.90 E-value=87 Score=34.80 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=27.9
Q ss_pred eCCcEEECCEEeEEEEEEeeCCCC-CCCChHHHH-HHHHHcCCCEEEE
Q 004525 31 DSRSLIINGRRELIISAAIHYPRS-VPGMWPGLV-QQAKEGGVNTIES 76 (747)
Q Consensus 31 ~~~~f~idGk~~~~~sG~~hy~r~-~~~~W~~~l-~k~ka~G~N~V~~ 76 (747)
|.+.+.|||||++++ +.+.-+ ....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 578899999999887 333333 122233334 4668899986654
No 193
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.82 E-value=1.4e+02 Score=32.11 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
-..++|++|++.|-+ -|..++-.|+=+ +..+.+=++.|.++||.+||+.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 80 SAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred CHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 355799999999988 555555444422 33455777889999999999997
No 194
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.81 E-value=2.7e+02 Score=32.06 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=0.0
Q ss_pred ECCEEeEEEEEEeeCCC---CCCCChHHHHHHHHHcCCC----EEEEceecCccCCCCCeeeecccchHHHHHHHHHHcC
Q 004525 37 INGRRELIISAAIHYPR---SVPGMWPGLVQQAKEGGVN----TIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQAR 109 (747)
Q Consensus 37 idGk~~~~~sG~~hy~r---~~~~~W~~~l~k~ka~G~N----~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G 109 (747)
+++.-|+++.+.-+-++ +.++.-+...+.+++.|++ ++...-.-|+-.|.+..++++ ..-+.+-|+.|++.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred cE-EEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccc
Q 004525 110 MY-MILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVEN 183 (747)
Q Consensus 110 L~-Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIEN 183 (747)
.. |++.|| -........++++++.+.|.+.++ ...|..|++ ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 195
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=24.52 E-value=1.6e+02 Score=25.54 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=28.6
Q ss_pred CeEEecccceEEEEEECCEEEEEEeCCCCCCCceeeeccccCCCccE-EEEEEec
Q 004525 503 PVLLIESKGHALHAFANQELQGSASGNGTHPPFKYKNPISLKAGKNE-IALLSMT 556 (747)
Q Consensus 503 ~~L~i~~~~d~a~vfvng~~iG~~~~~~~~~~~~~~~~~~l~~g~~~-L~ILven 556 (747)
..+........+.|.|||..+.... ....++|..|.|. |.|.|.+
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~~---------~~~~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSGG---------YSATIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCCC---------cceeeEccCCCceEEEEEEEc
Confidence 3444445577899999998754321 1122446778887 8888844
No 196
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=24.51 E-value=2e+02 Score=34.78 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=73.8
Q ss_pred CCEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 38 NGRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 38 dGk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
++++-+.+++..|+.+.+.+.=-++|++-.++|...+-|-.++ |-+ .+.+|++.+++.++.+|..+-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEee
Confidence 3345578899998776543322344555567999999995543 434 788999999877888887777
Q ss_pred ccccc--------ccCCCCCCcccCcC-CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 118 PFVAA--------EYNYGGIPVWLHYI-PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 118 Pyi~a--------Ew~~GG~P~WL~~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
|.... +|..-=+|.|+.+. .. .. +...++++-.++..++++.++
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 65443 35455578888761 11 11 224677777778888888776
No 197
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=24.45 E-value=1.5e+02 Score=31.71 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcC--cEEEEecCcccc-------cccCCCCCCcc
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQAR--MYMILRIGPFVA-------AEYNYGGIPVW 132 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~W 132 (747)
+|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.|++.+-|-.. +++..-++|.|
T Consensus 152 ~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~ 218 (274)
T cd00537 152 RLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDW 218 (274)
T ss_pred HHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHH
Confidence 333334579999998443 4444 7899999999998 556776666544 35556678999
Q ss_pred cCcCCCeEeccCChhHHHHHHHHHHHHHHHHhh
Q 004525 133 LHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKR 165 (747)
Q Consensus 133 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 165 (747)
+.+.-. ....+.....++-.++..++++.+.+
T Consensus 219 ~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 219 LLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 876210 01122234556667777778777764
No 198
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=24.43 E-value=6.5e+02 Score=28.60 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=61.6
Q ss_pred HcCCCEEEEce----ecCccCCCCCeeeecccchHHH--HHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCe--
Q 004525 68 EGGVNTIESYV----FWNGHELSPGKYYFGGRFNLVK--FIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGT-- 139 (747)
Q Consensus 68 a~G~N~V~~yv----~Wn~hEp~~G~~dF~g~~dl~~--fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~-- 139 (747)
++|+..+++.| ||+- |.+| .++.+ +-+-+-.+|++|..-| |+ .|+|+.+.-.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d----~w~kels~Ak~~in~g~ivfASP-------Ws---pPa~Mktt~~~ng 137 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSAD----NWYKELSTAKSAINPGMIVFASP-------WS---PPASMKTTNNRNG 137 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcc----hhhhhcccchhhcCCCcEEEecC-------CC---CchhhhhccCcCC
Confidence 47888899877 4554 2222 11222 2233567899999887 65 89999763221
Q ss_pred ----Eecc-CChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCc---ccHHHHHHHHHHHHh
Q 004525 140 ----VFRN-DTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGE---GGKRYALWAAKMAVA 209 (747)
Q Consensus 140 ----~~Rt-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~---~~~~y~~~l~~~~~~ 209 (747)
++|. ..++|-+...+|+. .++ .+|=|+-+.-|.||..... .|.. ...+..+.+++-++.
T Consensus 138 g~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~s 204 (433)
T COG5520 138 GNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLAS 204 (433)
T ss_pred ccccccchhHhHHHHHHHHHHHH----HHH------hCCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhh
Confidence 2332 23344444334333 333 4566888888889986431 1222 234455555555544
No 199
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=24.38 E-value=1e+02 Score=32.59 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCcccccc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAAE 123 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aE 123 (747)
+.-++.++++|++|+. |+. +.+|.+ ..++.|++.|-..| |-+|||..+-
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcCC
Confidence 3456788899999994 777 456654 56889999999977 9999998643
No 200
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.04 E-value=1.2e+02 Score=32.93 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHcCCCEEEEceecCccCC--CCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 56 PGMWPGLVQQAKEGGVNTIESYVFWNGHEL--SPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 56 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
++..++.++++++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+..
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 566788999999999999999875422111 12211122 2378899999999999988764
No 201
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.04 E-value=2.4e+02 Score=29.76 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCC-CCeee---e-cccchHHHHHHHHHHcCcEEEEecCcccccccCCCCC
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELS-PGKYY---F-GGRFNLVKFIKIIQQARMYMILRIGPFVAAEYNYGGI 129 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~d---F-~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~ 129 (747)
.++.-+...+.+++.|+..+.+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+| .
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~-----------~ 121 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG-----------Y 121 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------c
Confidence 445556667778899998876421 112111 11100 0 0122578889999999999774221 1
Q ss_pred CcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeeccccccc
Q 004525 130 PVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYG 186 (747)
Q Consensus 130 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg 186 (747)
+.|.. ..++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 122 ~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 122 DVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred ccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 21211 122334445555667777776643 3 3456788543
No 202
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.80 E-value=78 Score=33.22 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
..++.++.++++|..+|.+...+......+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 36778889999999999764332211111111100112356777888899999999987
No 203
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=23.79 E-value=1e+02 Score=35.19 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEE-EEecCcccccccCCCCCC
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM-ILRIGPFVAAEYNYGGIP 130 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P 130 (747)
...+.-+..|+.+|+.|+|+|-++++=.---+.+-.|.= -..|-...++++.+.|..+ +|-.| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 344567889999999999999998765433333323321 1346667778889999985 68876 8888
No 204
>PRK14567 triosephosphate isomerase; Provisional
Probab=23.74 E-value=1.5e+02 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 62 LVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 62 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
--.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999988 566555555422 44566778889999999999998
No 205
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=23.51 E-value=58 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.2
Q ss_pred CceEEEEEcCcccccccc
Q 004525 652 MGKGLAWLNGEEIGRYWP 669 (747)
Q Consensus 652 ~gKG~vwVNG~~iGRYW~ 669 (747)
-.+|.|||||++|.|.=.
T Consensus 54 pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 54 PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCCceEEECCeecccccc
Confidence 367999999999999753
No 206
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.41 E-value=87 Score=33.03 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCC-CeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSP-GKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 3467888999999999998631100001111 00110 013577888999999999998873
No 207
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.12 E-value=1.3e+02 Score=32.31 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred eEEEeCCcEEECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeec--ccchHHHHHH
Q 004525 27 NVTYDSRSLIINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG--GRFNLVKFIK 103 (747)
Q Consensus 27 ~v~~~~~~f~idGk~~~~~sG~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~ 103 (747)
.|.+. .+.+.+..+++++| +-.+ ..+.-.+..+.+|+.|.+..+.|++=+...| +.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 35553 35565544666777 3333 4455667788888999998888887754443 3454 4567778888
Q ss_pred HHHHcCcEEEEec
Q 004525 104 IIQQARMYMILRI 116 (747)
Q Consensus 104 la~~~GL~Vilr~ 116 (747)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 8999999888765
No 208
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=22.51 E-value=52 Score=37.43 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=52.8
Q ss_pred EECCEEeEEEEEEeeCCCC-CCCChHHHHHHHHHcC--CCEEEEceecCccCCCCCeeeeccc-chHHHHHHHHHHcCcE
Q 004525 36 IINGRRELIISAAIHYPRS-VPGMWPGLVQQAKEGG--VNTIESYVFWNGHELSPGKYYFGGR-FNLVKFIKIIQQARMY 111 (747)
Q Consensus 36 ~idGk~~~~~sG~~hy~r~-~~~~W~~~l~k~ka~G--~N~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~la~~~GL~ 111 (747)
++||-+ +-.++.+.|+- +.+.-++.|++-+..| -..|-| +|+|..+|. .+|.++.++|+++|.+
T Consensus 136 iidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~ 203 (388)
T COG0156 136 IIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGAL 203 (388)
T ss_pred HHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcE
Confidence 667766 56677777775 5577777888766554 566666 999999997 8999999999999988
Q ss_pred EEEe
Q 004525 112 MILR 115 (747)
Q Consensus 112 Vilr 115 (747)
+++-
T Consensus 204 L~VD 207 (388)
T COG0156 204 LYVD 207 (388)
T ss_pred EEEE
Confidence 7763
No 209
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.44 E-value=2.9e+02 Score=22.49 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHcCCCEEEEcee-cCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVF-WNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
..-.+.++-+.+.|+|..+++.. ....+...-.+..++ .+.+.+++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 34567888899999999999754 111111122445554 466799999999998665
No 210
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=22.28 E-value=1e+02 Score=34.58 Aligned_cols=46 Identities=20% Similarity=0.520 Sum_probs=37.1
Q ss_pred ccCCCCCeeeec-c---------cchHHHHH--HHHHHcCcEEEEecCcccccccCCCC
Q 004525 82 GHELSPGKYYFG-G---------RFNLVKFI--KIIQQARMYMILRIGPFVAAEYNYGG 128 (747)
Q Consensus 82 ~hEp~~G~~dF~-g---------~~dl~~fl--~la~~~GL~Vilr~GPyi~aEw~~GG 128 (747)
--|..||+|.|. | +.+..+++ +.|.+.|+.+-+-|=| +.+.|+..|
T Consensus 201 N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 201 NVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred cccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 446889999995 2 46777776 7899999999999977 999998854
No 211
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.27 E-value=1.8e+02 Score=31.26 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
.|.+.=+++++++.+.|+..|+++++.+. + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45555788999999999999999887654 2 2788999999999998875
No 212
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=22.19 E-value=92 Score=34.41 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcE--EE-Eec
Q 004525 58 MWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMY--MI-LRI 116 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~--Vi-lr~ 116 (747)
.|++.+.+++..|+ +|++.-+--..|..|+.|. |+...+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6888888899999999986 899999999999986 33 666
No 213
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.13 E-value=3.4e+02 Score=30.29 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----cCccC----------------------------CCCCeeeecccchHHHHH
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNGHE----------------------------LSPGKYYFGGRFNLVKFI 102 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~~dF~g~~dl~~fl 102 (747)
+.+..++.++.|...++|+.+.++- |.+-- +..|.|- ..|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 5778899999999999999998763 43211 1123443 34999999
Q ss_pred HHHHHcCcEEEEec
Q 004525 103 KIIQQARMYMILRI 116 (747)
Q Consensus 103 ~la~~~GL~Vilr~ 116 (747)
+.|+++|+.||--+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999654
No 214
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.11 E-value=1.6e+02 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.409 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCEEE-----EceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 62 LVQQAKEGGVNTIE-----SYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 62 ~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
..+.+++.|+.+|= |-|+|.--+..| .+..+++.++++|++|++
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVV 67 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEE
Confidence 35678999999886 678999999888 899999999999999875
No 215
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=21.84 E-value=8.9e+02 Score=24.95 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCCCCeeeec-ccchHHHHHHHHHHcCcEEEEec------CcccccccCC------
Q 004525 60 PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFG-GRFNLVKFIKIIQQARMYMILRI------GPFVAAEYNY------ 126 (747)
Q Consensus 60 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~la~~~GL~Vilr~------GPyi~aEw~~------ 126 (747)
++.++.|+++|++++.+ -+.-.|+ |..-|.+.++.+++.|+..+--- .||..-|.+.
T Consensus 67 ~~~~~~L~~~G~d~~tl----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~i 136 (239)
T cd07381 67 PEVADALKAAGFDVVSL----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFL 136 (239)
T ss_pred HHHHHHHHHhCCCEEEc----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEE
Q ss_pred ----CCCCcccCcCCCeEeccCChhHHHHHHHHHHHHHHHHhhcccccccCCceEeecccccccccccccCcccHHHHHH
Q 004525 127 ----GGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIVDMMKREKLFASQGGPIILAQVENEYGYYESFYGEGGKRYALW 202 (747)
Q Consensus 127 ----GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QIENEyg~~~~~~g~~~~~y~~~ 202 (747)
...+.|............++ .++++++++++-+. . ++ -|++.+...||.. ....+.+.
T Consensus 137 g~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~~ 198 (239)
T cd07381 137 AYTYGTNGIPLAAGARPGGVNPLD--LERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQRE 198 (239)
T ss_pred EEECCCCCCcCcccCCccccCccC--HHHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHHH
Q ss_pred HHHHHHhcCCcc
Q 004525 203 AAKMAVAQNIGV 214 (747)
Q Consensus 203 l~~~~~~~g~~v 214 (747)
+++.+.+.|+|+
T Consensus 199 la~~l~~~G~D~ 210 (239)
T cd07381 199 LARALIDAGADL 210 (239)
T ss_pred HHHHHHHCCCCE
No 216
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=21.61 E-value=72 Score=39.86 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=49.4
Q ss_pred CCCChHHHHHHHHHcCCCEEEE------------ceecCccC------CCCCeeeecccchHHHHHHHHHH-cCcEEEEe
Q 004525 55 VPGMWPGLVQQAKEGGVNTIES------------YVFWNGHE------LSPGKYYFGGRFNLVKFIKIIQQ-ARMYMILR 115 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~------------yv~Wn~hE------p~~G~~dF~g~~dl~~fl~la~~-~GL~Vilr 115 (747)
|-+.|+.+|+++|+.|.|+|.. |-.-+.|| ..-++|.|+ |+..+++-+++ -++.-|--
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 5689999999999999999983 32333333 223578888 99999988854 56654422
Q ss_pred cCcccccccCC-CCCCcccCcCCCe
Q 004525 116 IGPFVAAEYNY-GGIPVWLHYIPGT 139 (747)
Q Consensus 116 ~GPyi~aEw~~-GG~P~WL~~~p~~ 139 (747)
+ + |+. .-=-.||+.+|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 0 111 1124688777764
No 217
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.47 E-value=1.8e+02 Score=35.44 Aligned_cols=64 Identities=13% Similarity=0.231 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHcCCCEE--EEceecCccCCCCCeeeeccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 58 MWPGLVQQAKEGGVNTI--ESYVFWNGHELSPGKYYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 58 ~W~~~l~k~ka~G~N~V--~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
...+.++++|+.|+-.= ..=++|--. -.-+.|.|+-. -|...+++..++.|++|++.+=|||..
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 35677899999998643 333345321 11245666532 388999999999999999999999864
No 218
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.43 E-value=2.7e+02 Score=30.55 Aligned_cols=68 Identities=19% Similarity=0.355 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee-cCc-cCCCCCe-----eeeccc--chHHHHHHHHHHcCcEEEEecCccccc
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF-WNG-HELSPGK-----YYFGGR--FNLVKFIKIIQQARMYMILRIGPFVAA 122 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~-Wn~-hEp~~G~-----~dF~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 122 (747)
+.+.-++.++++++.||-.=.+++= |.. ++..-|. |+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 5666789999999999976666553 532 2222232 334322 389999999999999999988888754
No 219
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.22 E-value=4.4e+02 Score=30.11 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=39.1
Q ss_pred eEEEEEEeeCCCCCCCCh----HHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 42 ELIISAAIHYPRSVPGMW----PGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 42 ~~~~sG~~hy~r~~~~~W----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
+++++|.+.-...++... .+.+++++..++. +|+.+.-|.... .+....++.++.|+.|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 678899886443444333 3445677776654 555566666432 24455677789999987544
No 220
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.84 E-value=1e+02 Score=34.49 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEec
Q 004525 63 VQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRI 116 (747)
Q Consensus 63 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~ 116 (747)
++.+-++|..+|.+.|+|.- .+...-..+|.+..+.|++.||-++++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 66788999999999999982 1223334589999999999999999854
No 221
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=20.71 E-value=3.1e+02 Score=29.46 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccCcCCCeEeccCChhHHHHHHHHHHHHH-------HHHhhcccc
Q 004525 97 NLVKFIKIIQQARMYMILRIGPFVAAEYNYGGIPVWLHYIPGTVFRNDTEPFKYHMQKFMTLIV-------DMMKREKLF 169 (747)
Q Consensus 97 dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~-------~~l~~~~~~ 169 (747)
...+++..|++.|-.++|-| |-.-||+|.|... ++.+-+.++.=+++.++|...-. ++|+ .+-
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~--~la 107 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLA--ELA 107 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHH--HHh
Confidence 46678888999999999988 4556999999875 23333334443444444433211 1111 011
Q ss_pred cccCCceEeeccccc
Q 004525 170 ASQGGPIILAQVENE 184 (747)
Q Consensus 170 ~~~gGpII~~QIENE 184 (747)
..++=.++|--||-|
T Consensus 108 ~~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 108 KKNNVYLVMGAIERE 122 (337)
T ss_pred hcCCeEEEEEEEecc
Confidence 133445666678887
No 222
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.63 E-value=1.4e+02 Score=35.83 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=44.5
Q ss_pred eeCCCCCCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE
Q 004525 49 IHYPRSVPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI 113 (747)
Q Consensus 49 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi 113 (747)
+=|.|.|.+.-+..++++++.|+..|++....|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 45677787888889999999999999998776653 378899999999999864
No 223
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.60 E-value=1.2e+02 Score=33.14 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHcCCCEEEEcee----cCccCC------CCC---------eeeecccchHHHHHHHHHHcCcEEEEe
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVF----WNGHEL------SPG---------KYYFGGRFNLVKFIKIIQQARMYMILR 115 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~dF~g~~dl~~fl~la~~~GL~Vilr 115 (747)
+.+.-++.|+.|...++|+++.++- |.+.-+ ..| .|.- .|+..+++.|++.|+.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 5567789999999999999998874 443221 122 3333 49999999999999999954
Q ss_pred c
Q 004525 116 I 116 (747)
Q Consensus 116 ~ 116 (747)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 224
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=20.52 E-value=3.5e+02 Score=27.33 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHcCcEEEEecCcccccccCC-----C--CCCcccCcCCC
Q 004525 96 FNLVKFIKIIQQARMYMILRIGPFVAAEYNY-----G--GIPVWLHYIPG 138 (747)
Q Consensus 96 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~-----G--G~P~WL~~~p~ 138 (747)
+.+..|++.+++.|.++++=.+++.....-. . ..|.|+-+.+.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3577889999888988887777654332211 1 23578877543
No 225
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.49 E-value=1.6e+02 Score=28.86 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=46.8
Q ss_pred CEEeEEEEEEeeCCCCCCCChHHHHHHHHHcCCCEEEEcee-cCccCCCCCeeeecccchHHHHHHHHHHcCcEEEEecC
Q 004525 39 GRRELIISAAIHYPRSVPGMWPGLVQQAKEGGVNTIESYVF-WNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMILRIG 117 (747)
Q Consensus 39 Gk~~~~~sG~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vilr~G 117 (747)
++|.+++ +|-+-.....|+..++.++ .|+++|..=.+ ....+..+..+++.. ..+.+.+++++.++.-+.-.|
T Consensus 12 ~~~~li~---~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~liG 85 (251)
T TIGR02427 12 GAPVLVF---INSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVFCG 85 (251)
T ss_pred CCCeEEE---EcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEEEE
Confidence 5676666 4776777888998888876 47877775332 444444444555552 233334444555543222223
Q ss_pred cccccccCCCCCCcc
Q 004525 118 PFVAAEYNYGGIPVW 132 (747)
Q Consensus 118 Pyi~aEw~~GG~P~W 132 (747)
+..||.=++
T Consensus 86 ------~S~Gg~~a~ 94 (251)
T TIGR02427 86 ------LSLGGLIAQ 94 (251)
T ss_pred ------eCchHHHHH
Confidence 567877544
No 226
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.24 E-value=4.7e+02 Score=27.88 Aligned_cols=84 Identities=8% Similarity=-0.011 Sum_probs=51.2
Q ss_pred hHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEE--EEecCcccccccCCCCCCcccCcC
Q 004525 59 WPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAAEYNYGGIPVWLHYI 136 (747)
Q Consensus 59 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~ 136 (747)
-.+.++.+++.|+++|++++-. |+--..+.....+...|.+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 3568999999999999996531 1111111111236788888899998863 32234442
Q ss_pred CCeEeccCChhHHHHHHHHHHHHHHHHh
Q 004525 137 PGTVFRNDTEPFKYHMQKFMTLIVDMMK 164 (747)
Q Consensus 137 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 164 (747)
+.+-+.|+..+++..+.+.+.++.-+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22345577777776666666655544
No 227
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.22 E-value=9.6e+02 Score=24.73 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=37.8
Q ss_pred CCCChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEEE
Q 004525 55 VPGMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 55 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vil 114 (747)
...-+++.|++++++|+..|+..- .+.+..+ ..+++.+.++++++||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEe
Confidence 455689999999999999999854 1122211 11389999999999999874
No 228
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.17 E-value=1.4e+02 Score=31.64 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHcCCCEEEEceecCccCCCCCeeeecccchHHHHHHHHHHcCcEEE-EecCccccc
Q 004525 57 GMWPGLVQQAKEGGVNTIESYVFWNGHELSPGKYYFGGRFNLVKFIKIIQQARMYMI-LRIGPFVAA 122 (747)
Q Consensus 57 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~a 122 (747)
+.-.+.++++|+.|+ -|+. +.+|.+ ..++.|++.|-..| |-+|||..+
T Consensus 110 ~~l~~~i~~l~~~gI-~VSL-----FiDP~~------------~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 110 DKLCELVKRFHAAGI-EVSL-----FIDADK------------DQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 345677888888888 5565 355554 55888888898866 999998764
No 229
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=20.16 E-value=1.4e+02 Score=36.47 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHcCCCEEEEceecCc---cCCCCCe---eeecc--cchHHHHHHHHHHcCcEEEE
Q 004525 54 SVPGMWPGLVQQAKEGGVNTIESYVFWNG---HELSPGK---YYFGG--RFNLVKFIKIIQQARMYMIL 114 (747)
Q Consensus 54 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~---~dF~g--~~dl~~fl~la~~~GL~Vil 114 (747)
+.++.-++.|+-+|+.|+++|+.--.-.. ..+-|++ .-|++ .......+.+.+++|+...+
T Consensus 69 Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 69 VRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred cCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 35567889999999999999998644322 2333443 24653 24567788999999999754
No 230
>PLN02692 alpha-galactosidase
Probab=20.14 E-value=2.6e+02 Score=32.16 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=63.7
Q ss_pred CCCCCcchhHHHHHHHhhhhccc---ccce---EEEeCC------cEEECCEEeEEEEE----EeeCCCCCCCChHHHHH
Q 004525 1 MKPRTPIAPFALLIFFSSSITYC---FAGN---VTYDSR------SLIINGRRELIISA----AIHYPRSVPGMWPGLVQ 64 (747)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~---v~~~~~------~f~idGk~~~~~sG----~~hy~r~~~~~W~~~l~ 64 (747)
|..|..++.+++++.+.++-... ++.+ ..++++ .-+-||.....-.| +.+++.+..+.-.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad 80 (412)
T PLN02692 1 MERRAMVIKMALLLILISVMVMVMVESSRSVNNKEFDDDSEILRRNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETAD 80 (412)
T ss_pred CcchhHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhhhhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHH
Confidence 55666677777776666644432 2222 222222 11123322211222 12233344444455555
Q ss_pred HH-----HHcCCCEEEEceecCccCC-CCCee-----eecccchHHHHHHHHHHcCcEE--EEecCccccc
Q 004525 65 QA-----KEGGVNTIESYVFWNGHEL-SPGKY-----YFGGRFNLVKFIKIIQQARMYM--ILRIGPFVAA 122 (747)
Q Consensus 65 k~-----ka~G~N~V~~yv~Wn~hEp-~~G~~-----dF~g~~dl~~fl~la~~~GL~V--ilr~GPyi~a 122 (747)
.| |++|.+.|.+=-.|...+. ..|.+ .|- .-+..+.+.+++.||+. -.-+|.+.|+
T Consensus 81 ~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP--~G~k~ladyiH~~GLKfGIy~d~G~~tC~ 149 (412)
T PLN02692 81 ALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFP--SGIKALADYVHSKGLKLGIYSDAGYFTCS 149 (412)
T ss_pred HHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcC--CcHHHHHHHHHHCCCceEEEecCCccccC
Confidence 44 6678888888777864332 22332 232 13888899999999985 3666766664
Done!