Query 004527
Match_columns 747
No_of_seqs 349 out of 1847
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:04:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004527.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1835-1839//hhsearch_pdb/004527hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 1.0 1 1 53.2 8.5 69 29-103 15-86 (103)
2 1vd2_A Protein kinase C, IOTA 1.0 1 1 44.9 10.2 72 29-102 13-87 (89)
3 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 38.1 9.4 70 30-102 19-100 (102)
4 1q1o_A Cell division control p 1.0 1 1 36.0 8.0 69 31-101 22-97 (98)
5 2ktr_A Sequestosome-1; autopha 1.0 1 1 35.3 9.6 71 29-102 33-115 (117)
6 1oey_A P67-PHOX, neutrophil cy 1.0 1 1 34.7 7.2 73 25-102 9-81 (83)
7 1pqs_A Cell division control p 1.0 1 1 33.1 5.8 67 32-100 2-75 (77)
8 1wmh_B Partitioning defective- 1.0 1 1 32.2 8.4 72 27-102 11-84 (86)
9 2jrh_A Mitogen-activated prote 1.0 1 1 30.4 8.3 71 26-103 9-82 (94)
10 2c60_A Human mitogen-activated 1.0 1 1 30.1 8.0 72 25-103 35-109 (111)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=53.19 Aligned_cols=69 Identities=14% Similarity=0.419 Sum_probs=60.9
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCC---CEEEEEEEC
Q ss_conf 358336899159988445899999880599981499998049987614630707799999630585---659999703
Q 004527 29 NGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDT---ATVDVFIQS 103 (747)
Q Consensus 29 ~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~---~~~~i~~~~ 103 (747)
.+|+++++.+.|-++|.|+.+|+.+.|+ +++.++|+ |...+|+|.+++||.+.+|..+.+ .++.|++..
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fG---q~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHS---SCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 2673789963687429999999999859---74668985---561777515788999999987037766653899955
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=44.85 Aligned_cols=72 Identities=11% Similarity=0.245 Sum_probs=55.6
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCC--EEEEEEE
Q ss_conf 3583368991599884458999998805999-814999980499876146307077999996305856--5999970
Q 004527 29 NGGEAYAIDIDEETEFSGFKSEVAEMFNCSA-DTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTA--TVDVFIQ 102 (747)
Q Consensus 29 ~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~-~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~--~~~i~~~ 102 (747)
-.|..+.+.++.+++|.+|.+|+.+.+++.. +.+.++|.=. +.+++.|++|+||...+..+.-.. .+-|+|.
T Consensus 13 ~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf 87 (89)
T 1vd2_A 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EGDPCTVSSQLELEEAFRLYELNKDSELLIHVF 87 (89)
T ss_dssp SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 478599998799989999999999996889898279999989--979503348899999999987057877899973
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=38.15 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=56.7
Q ss_pred CCCEEEEEECCC-----------CCHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCEE
Q ss_conf 583368991599-----------88445899999880-599981499998049987614630707799999630585659
Q 004527 30 GGEAYAIDIDEE-----------TEFSGFKSEVAEMF-NCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATV 97 (747)
Q Consensus 30 gg~~~~~~v~~~-----------~s~~~~~~~l~~~~-~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~~~ 97 (747)
|++.|-+.++++ .+|.+|..++..+| ++...++.++|. .++.+||++++|++|...+.... -..+
T Consensus 19 ~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlItiSsDeEL~~Al~~~~-~~~l 95 (102)
T 2kkc_A 19 AREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDIF 95 (102)
T ss_dssp EEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCEEEECCHHHHHHHHHHCC-CCEE
T ss_conf 87269988336777542224466669999999999754457983899999--89999897648899999997158-8759
Q ss_pred EEEEE
Q ss_conf 99970
Q 004527 98 DVFIQ 102 (747)
Q Consensus 98 ~i~~~ 102 (747)
.||+-
T Consensus 96 RlyVk 100 (102)
T 2kkc_A 96 RIYIK 100 (102)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99997
No 4
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=35.99 Aligned_cols=69 Identities=12% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC-C----CCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCC--CEEEEEE
Q ss_conf 8336899159988445899999880599-9----81499998049987614630707799999630585--6599997
Q 004527 31 GEAYAIDIDEETEFSGFKSEVAEMFNCS-A----DTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDT--ATVDVFI 101 (747)
Q Consensus 31 g~~~~~~v~~~~s~~~~~~~l~~~~~~~-~----~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~--~~~~i~~ 101 (747)
+.+..+.|..+|+|.+|.++|.+.+.+. . ..++++|+=. +.+.+.+.+|+|+...++..... ..+.|.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE--dGD~Vtl~sddDl~~A~e~~~e~~~~~l~Iwv 97 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DGDFVVLGSDEDWNVAKEMLAENNEKFLNIRL 97 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS--SSCEEEECSHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC--CCCEEEECCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 86799996699989999999999976786545465047999969--99988772889999999997751057089997
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=35.29 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=57.1
Q ss_pred ECCCEEEEEECCC-----------CCHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCE
Q ss_conf 3583368991599-----------88445899999880-59998149999804998761463070779999963058565
Q 004527 29 NGGEAYAIDIDEE-----------TEFSGFKSEVAEMF-NCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTAT 96 (747)
Q Consensus 29 ~gg~~~~~~v~~~-----------~s~~~~~~~l~~~~-~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~~ 96 (747)
.++++|-+.++.+ .+|.+|..++..+| ++...++.++|. .++.+||++++|++|..-+.... -..
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlItISsDeEL~~Al~~~~-~~~ 109 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 109 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCEEEECCHHHHHHHHHHCC-CCE
T ss_conf 887279988426777431124567779999999999734558983899999--89999897638899999998337-881
Q ss_pred EEEEEE
Q ss_conf 999970
Q 004527 97 VDVFIQ 102 (747)
Q Consensus 97 ~~i~~~ 102 (747)
+.||+-
T Consensus 110 lRlyVk 115 (117)
T 2ktr_A 110 FRIYIK 115 (117)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 899998
No 6
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=34.72 Aligned_cols=73 Identities=8% Similarity=0.202 Sum_probs=59.1
Q ss_pred CEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 779735833689915998844589999988059998149999804998761463070779999963058565999970
Q 004527 25 SLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQ 102 (747)
Q Consensus 25 ~~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~~~~i~~~ 102 (747)
++.|. .|-.|.|.++++|.+|.++|++.+.+..+.+.+.|.-+ +...++ +.+|+||+.+..-..+. .+-+++.
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~v-i~~d~dl~~aw~~~~n~-~LtL~C~ 81 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELV-PLSEDSMKDAWGQVKNY-CLTLWCE 81 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCE-ECCTTTHHHHHTTCBTT-EEEEEEC
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCCEE-CCCHHHHHHHHHHCCCC-CEEEEEE
T ss_conf 99999--99999977999989999999998589964149996078-789701-35757799999752388-0899982
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=1.00 E-value=1 Score=33.12 Aligned_cols=67 Identities=12% Similarity=0.271 Sum_probs=52.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC--CCEEEEE
Q ss_conf 336899159988445899999880599-----98149999804998761463070779999963058--5659999
Q 004527 32 EAYAIDIDEETEFSGFKSEVAEMFNCS-----ADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD--TATVDVF 100 (747)
Q Consensus 32 ~~~~~~v~~~~s~~~~~~~l~~~~~~~-----~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~--~~~~~i~ 100 (747)
.+..|.|..+++|.+|.+++...+... ...++++|+=. +.+.+++.+|+|+..-++.... ...+.|.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE--dGD~Vti~sddDl~~A~~~~~~~~~~~leiW 75 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DGDFVVLGSDEDWNVAKEMLAENNEKFLNIR 75 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEET--TTEEEECCSTTHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC--CCCEEEECCHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 7899996799989999999999974665646565068999958--9999877388999999999776106708999
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=32.16 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=59.0
Q ss_pred EEECCCEEEEEECC--CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 97358336899159--98844589999988059998149999804998761463070779999963058565999970
Q 004527 27 SYNGGEAYAIDIDE--ETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDTATVDVFIQ 102 (747)
Q Consensus 27 ~Y~gg~~~~~~v~~--~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~~~~~i~~~ 102 (747)
+.-|++.|=+.+++ ..+|.+|..++..++++....+.+.|.= .+.+|++|+||+++..-+.... .-++||+.
T Consensus 11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~dGDLlpInnDdnl~~Al~~a~--plLRl~Iq 84 (86)
T 1wmh_B 11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AHGDLLPLTNDDSLHRALASGP--PPLRLLVQ 84 (86)
T ss_dssp EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TTSCEEECCSHHHHHHHTTSSS--SCEEEEEE
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC--CCCCEEEECCHHHHHHHHHHCC--CCEEEEEE
T ss_conf 63388046767268878788999999999757899878999988--9999761458899999997288--74799997
No 9
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=1.00 E-value=1 Score=30.42 Aligned_cols=71 Identities=17% Similarity=0.441 Sum_probs=59.5
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC---CCEEEEEEE
Q ss_conf 79735833689915998844589999988059998149999804998761463070779999963058---565999970
Q 004527 26 LSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGD---TATVDVFIQ 102 (747)
Q Consensus 26 ~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~---~~~~~i~~~ 102 (747)
.+|. |+.++|...|-+.|.++.+|+...|| +++.++|. |.--+|++.+.+||+.-++.-+. ..++.|.+.
T Consensus 9 fE~~-gEKRIi~f~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 9 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHC---SSEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8862-70589964898449999999999968---81435773---45467752577889999998605844142689997
Q ss_pred C
Q ss_conf 3
Q 004527 103 S 103 (747)
Q Consensus 103 ~ 103 (747)
.
T Consensus 82 ~ 82 (94)
T 2jrh_A 82 S 82 (94)
T ss_dssp E
T ss_pred C
T ss_conf 3
No 10
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=1.00 E-value=1 Score=30.11 Aligned_cols=72 Identities=17% Similarity=0.445 Sum_probs=58.8
Q ss_pred CEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCC---CEEEEEE
Q ss_conf 7797358336899159988445899999880599981499998049987614630707799999630585---6599997
Q 004527 25 SLSYNGGEAYAIDIDEETEFSGFKSEVAEMFNCSADTMSIKYFLPGNKKTLISISKDKDFKRMLNFLGDT---ATVDVFI 101 (747)
Q Consensus 25 ~~~Y~gg~~~~~~v~~~~s~~~~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~v~~D~dl~~m~~~~~~~---~~~~i~~ 101 (747)
+.+|. ||.++|...|-+.|.++.+|+...|+ +++.++|. |..-+|++.+.+||+.-++.-+.+ .++.|.+
T Consensus 35 KfE~~-gEKRIiqf~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 35 KFEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp EEEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 98852-70689954797448999999999868---81436774---5667785356788999999860584414268998
Q ss_pred EC
Q ss_conf 03
Q 004527 102 QS 103 (747)
Q Consensus 102 ~~ 103 (747)
..
T Consensus 108 ~~ 109 (111)
T 2c60_A 108 LS 109 (111)
T ss_dssp EC
T ss_pred EC
T ss_conf 53
Done!