BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004529
(746 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 16/134 (11%)
Query: 567 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-- 624
V++V +F MDE +LDAICERL+ + S ++ G + +M+FI+RG++ES+ DG
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 625 ----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSL 680
L EGD CG+ELLTW L+ S + +P RTV+ LT VEAF+L
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGS------NLPSS----TRTVKALTEVEAFAL 117
Query: 681 RAADIEEVTSLFAR 694
A +++ V S F R
Sbjct: 118 IADELKFVASQFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 74/147 (50%)
Query: 495 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPED 554
Q + RR R +D++ ++R RLP+ L +++ E + W+ G++ L + P++
Sbjct: 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDE 64
Query: 555 LQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVR 614
L+ +I HL K + ++ +F L ++ ++ G ++ +G ++ + F+
Sbjct: 65 LRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCS 124
Query: 615 GKMESIGEDGIAVCLSEGDACGEELLT 641
G ME + ++ + L +GD G + LT
Sbjct: 125 GSMEVLKDNTVLAILGKGDLIGSDSLT 151
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 497 LVKRRLDMSLRR-----RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNL 551
LV R D S R+ + VEQ+M +LP R+++ + + + + +ED + L
Sbjct: 1 LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGEL 59
Query: 552 PEDLQREIRR-HLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMV 610
L+ EI + K V + +FA D + A+ +L+ + + G I+ G + +KM
Sbjct: 60 NGPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMY 119
Query: 611 FIVRGKMESIGEDGIAVCLSEGDACGE-ELLTWCLEHSSVNRDA 653
FI G + + + + LS+G GE LLT +SV D
Sbjct: 120 FIQHGVVSVLTKGNKEMKLSDGSYFGEISLLTRGRRTASVRADT 163
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP +R+++ + + + + +E+ + + L + L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNFNCRKLV 77
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +LR + + G I+ G + +KM FI G I + +
Sbjct: 78 ATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEM 137
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
L++G GE LLT +SV D
Sbjct: 138 KLTDGSYFGEICLLTKGRRTASVRADT 164
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 77
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 78 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 137
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 138 KLSDGSYFGEICLLTRGRRTASVRADT 164
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 14 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 72
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 73 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 132
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 133 KLSDGSYFGEICLLTRGRRTASVRADT 159
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FV 567
+ VE++M++R+LP LR ++ + Y + + +E +F + E +++++ + + V
Sbjct: 15 KQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLV 73
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IA 626
V F D + + L + + ++ G ++M FI +G ++ I DG IA
Sbjct: 74 ASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIA 133
Query: 627 VCLSEGDACGE 637
LS+G GE
Sbjct: 134 TSLSDGSYFGE 144
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 19 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNXRKLV 77
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 78 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 137
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
L++G GE LLT +SV D
Sbjct: 138 KLADGSYFGEICLLTRGRRTASVRADT 164
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 13 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLV 71
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 72 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 131
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
L++G GE LLT +SV D
Sbjct: 132 KLADGSYFGEICLLTRGRRTASVRADT 158
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +ED + L L+ +I + K V
Sbjct: 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLV 74
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + A+ +L+ + + G I+ G + +KM FI G + + + +
Sbjct: 75 ASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEM 134
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+M +LP R+++ + + + + +E+ + L E L+ EI + K V
Sbjct: 13 KQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRKLV 71
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+ +FA D + ++ +LR + + G I+ G + +KM FI G + + +
Sbjct: 72 ASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKET 131
Query: 628 CLSEGDACGE 637
L++G GE
Sbjct: 132 KLADGSYFGE 141
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Query: 509 RDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRR-HLFKFV 567
+ VEQ+ +LP R+++ + + + + +ED + L L+ EI + K V
Sbjct: 16 KQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNFNCRKLV 74
Query: 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAV 627
+FA D + A +L+ + + G I+ G + +K FI G + + +
Sbjct: 75 ASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEX 134
Query: 628 CLSEGDACGEE-LLTWCLEHSSVNRDA 653
LS+G GE LLT +SV D
Sbjct: 135 KLSDGSYFGEICLLTRGRRTASVRADT 161
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 552 PEDLQREIRRHLF-KFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMV 610
P+D++ +I HL K K+ F L + L A+ + G I + G ++ +
Sbjct: 13 PKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLC 72
Query: 611 FIVRGKMESIGEDGIAVCLSEGDACGE 637
F+V G +E I +D + L +GD G+
Sbjct: 73 FVVSGSLEVIQDDEVVAILGKGDVFGD 99
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 581 LDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-----IAVCLSEGDAC 635
LD + ++ Y + S I+Y G E + FI++G + + ED I L+ GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 65
Query: 636 GE 637
GE
Sbjct: 66 GE 67
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 564 FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKM-----E 618
+F+K V F + E IL + + L + Y +G I+ +G + I +GK+ +
Sbjct: 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED 215
Query: 619 SIGEDGIAV-CLSEGDACGEELL 640
S ED + + L +GD GE+ L
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEKAL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,535,415
Number of Sequences: 62578
Number of extensions: 899351
Number of successful extensions: 2350
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2323
Number of HSP's gapped (non-prelim): 23
length of query: 746
length of database: 14,973,337
effective HSP length: 106
effective length of query: 640
effective length of database: 8,340,069
effective search space: 5337644160
effective search space used: 5337644160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)