Query 004529
Match_columns 746
No_of_seqs 440 out of 2720
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 00:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.5E-91 3.3E-96 799.2 43.1 480 192-738 66-578 (727)
2 PLN03192 Voltage-dependent pot 100.0 3.9E-66 8.5E-71 623.8 47.8 413 192-693 50-487 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 3.3E-64 7.2E-69 535.2 34.8 406 210-693 3-424 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 3.3E-65 7.1E-70 545.5 24.0 443 190-696 204-662 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.6E-56 3.4E-61 481.2 28.4 415 192-706 216-649 (815)
6 KOG3713 Voltage-gated K+ chann 99.5 9.2E-14 2E-18 151.4 16.2 171 244-503 239-439 (477)
7 PRK09392 ftrB transcriptional 99.3 2.3E-11 5E-16 126.1 15.5 111 566-695 8-122 (236)
8 PRK11753 DNA-binding transcrip 99.3 1.4E-10 3E-15 117.9 16.5 104 574-695 6-114 (211)
9 PF00520 Ion_trans: Ion transp 99.2 4.4E-11 9.5E-16 119.1 11.8 171 249-490 1-200 (200)
10 cd00038 CAP_ED effector domain 99.2 1.1E-10 2.5E-15 104.8 13.2 102 572-692 1-107 (115)
11 PF08412 Ion_trans_N: Ion tran 99.2 2.1E-11 4.6E-16 102.2 6.5 67 161-228 5-71 (77)
12 PF00027 cNMP_binding: Cyclic 99.2 1.4E-10 3E-15 100.6 11.3 84 591-693 2-90 (91)
13 smart00100 cNMP Cyclic nucleot 99.2 3.8E-10 8.2E-15 101.9 13.2 104 572-692 1-109 (120)
14 KOG1545 Voltage-gated shaker-l 99.1 1.7E-11 3.8E-16 127.4 0.7 48 444-491 396-443 (507)
15 PRK11161 fumarate/nitrate redu 99.1 1.3E-09 2.9E-14 112.8 14.5 109 567-695 15-129 (235)
16 KOG1113 cAMP-dependent protein 99.1 3.4E-10 7.4E-15 118.7 8.5 107 566-691 123-229 (368)
17 PRK10402 DNA-binding transcrip 99.0 1.5E-09 3.3E-14 111.9 12.9 96 581-695 24-124 (226)
18 KOG0614 cGMP-dependent protein 99.0 2.2E-10 4.8E-15 124.7 6.7 115 559-692 147-262 (732)
19 KOG0614 cGMP-dependent protein 99.0 4.2E-10 9.1E-15 122.6 8.6 110 564-692 270-387 (732)
20 COG2905 Predicted signal-trans 99.0 1.5E-09 3.2E-14 120.2 12.4 115 566-705 8-123 (610)
21 COG0664 Crp cAMP-binding prote 99.0 4.3E-09 9.4E-14 106.1 15.1 106 568-692 3-113 (214)
22 KOG1419 Voltage-gated K+ chann 99.0 3E-09 6.5E-14 116.7 14.6 91 436-533 264-354 (654)
23 KOG1420 Ca2+-activated K+ chan 99.0 1.4E-10 3.1E-15 126.3 3.4 135 439-583 286-428 (1103)
24 PLN02868 acyl-CoA thioesterase 99.0 3.4E-09 7.4E-14 119.1 12.0 106 566-692 9-118 (413)
25 PF07885 Ion_trans_2: Ion chan 98.9 1E-08 2.3E-13 87.7 9.5 55 441-495 24-78 (79)
26 TIGR03697 NtcA_cyano global ni 98.8 2.8E-08 6E-13 99.5 12.1 83 596-695 1-88 (193)
27 PRK09391 fixK transcriptional 98.8 3.5E-08 7.6E-13 102.1 12.4 91 583-695 33-128 (230)
28 PRK13918 CRP/FNR family transc 98.7 8.2E-08 1.8E-12 96.9 12.4 79 587-685 5-90 (202)
29 KOG1113 cAMP-dependent protein 98.7 3.1E-08 6.7E-13 104.2 7.3 112 562-692 236-349 (368)
30 KOG4390 Voltage-gated A-type K 98.7 1.9E-09 4.1E-14 113.2 -2.3 165 244-496 226-415 (632)
31 PRK10537 voltage-gated potassi 98.1 3.7E-05 8E-10 85.5 14.9 54 441-494 168-221 (393)
32 KOG3684 Ca2+-activated K+ chan 97.8 0.00025 5.4E-09 77.5 14.0 92 438-537 284-375 (489)
33 PF01007 IRK: Inward rectifier 97.6 0.00041 8.9E-09 75.5 11.9 55 440-494 83-139 (336)
34 KOG2968 Predicted esterase of 97.2 0.00026 5.7E-09 82.4 4.4 95 580-693 500-599 (1158)
35 PF04831 Popeye: Popeye protei 97.2 0.014 3E-07 55.4 14.8 115 572-706 9-127 (153)
36 KOG1418 Tandem pore domain K+ 97.2 0.00073 1.6E-08 75.7 7.2 59 441-499 115-173 (433)
37 PRK11832 putative DNA-binding 97.1 0.014 3E-07 58.8 14.8 94 580-692 14-109 (207)
38 KOG2968 Predicted esterase of 96.6 0.013 2.8E-07 68.9 10.8 99 583-694 110-214 (1158)
39 KOG3542 cAMP-regulated guanine 96.4 0.01 2.2E-07 67.4 8.7 108 566-692 282-391 (1283)
40 PLN03223 Polycystin cation cha 96.0 0.67 1.4E-05 57.6 21.3 34 467-500 1395-1428(1634)
41 KOG3827 Inward rectifier K+ ch 95.5 0.045 9.7E-07 59.2 8.3 56 441-496 112-169 (400)
42 KOG3193 K+ channel subunit [In 95.5 0.037 8E-07 61.6 7.4 26 443-468 219-244 (1087)
43 KOG4404 Tandem pore domain K+ 95.4 0.016 3.5E-07 61.1 4.3 61 441-501 186-254 (350)
44 KOG2302 T-type voltage-gated C 95.3 0.3 6.6E-06 58.2 14.4 109 191-327 1102-1235(1956)
45 KOG4404 Tandem pore domain K+ 95.1 0.0099 2.2E-07 62.7 1.8 51 441-491 80-130 (350)
46 KOG1418 Tandem pore domain K+ 91.9 0.041 8.9E-07 61.6 -0.5 47 441-487 242-296 (433)
47 KOG2302 T-type voltage-gated C 91.1 27 0.00059 42.6 20.9 100 205-329 80-192 (1956)
48 KOG3542 cAMP-regulated guanine 90.2 0.47 1E-05 54.5 5.7 89 566-681 38-126 (1283)
49 KOG2301 Voltage-gated Ca2+ cha 87.7 4.2 9E-05 52.9 12.3 101 244-364 871-986 (1592)
50 KOG3676 Ca2+-permeable cation 78.1 95 0.0021 37.5 17.2 75 454-529 601-682 (782)
51 PF07883 Cupin_2: Cupin domain 76.9 4.5 9.8E-05 32.8 4.6 45 591-636 3-48 (71)
52 PF08006 DUF1700: Protein of u 73.6 11 0.00023 37.5 7.1 56 505-562 4-63 (181)
53 KOG2301 Voltage-gated Ca2+ cha 73.1 47 0.001 43.7 14.2 46 244-311 472-519 (1592)
54 PRK13290 ectC L-ectoine syntha 69.9 21 0.00046 33.2 7.8 47 590-636 39-86 (125)
55 COG4709 Predicted membrane pro 69.3 22 0.00049 35.2 7.9 56 506-563 5-64 (195)
56 TIGR00870 trp transient-recept 68.0 2.9E+02 0.0063 33.7 23.7 35 466-500 587-621 (743)
57 PF05899 Cupin_3: Protein of u 67.6 9.9 0.00021 31.9 4.6 41 594-636 15-55 (74)
58 KOG3614 Ca2+/Mg2+-permeable ca 64.3 4.2E+02 0.0091 34.3 21.0 53 471-523 1019-1073(1381)
59 KOG3609 Receptor-activated Ca2 62.7 2.8E+02 0.006 33.9 16.6 19 442-460 554-572 (822)
60 PF00060 Lig_chan: Ligand-gate 60.9 12 0.00025 35.2 4.3 76 437-518 40-115 (148)
61 PF13314 DUF4083: Domain of un 58.0 36 0.00078 27.1 5.6 52 466-517 3-57 (58)
62 KOG3599 Ca2+-modulated nonsele 49.5 6E+02 0.013 31.5 17.5 23 244-266 497-519 (798)
63 COG1917 Uncharacterized conser 44.9 44 0.00096 30.9 5.4 51 588-639 45-96 (131)
64 PLN03192 Voltage-dependent pot 43.9 5.6E+02 0.012 31.7 16.3 16 312-327 175-190 (823)
65 PF08016 PKD_channel: Polycyst 43.7 2.7E+02 0.0059 31.4 12.6 22 245-266 242-263 (425)
66 PF10011 DUF2254: Predicted me 43.1 1.1E+02 0.0023 34.2 8.9 63 437-501 96-160 (371)
67 PF15028 PTCRA: Pre-T-cell ant 41.8 12 0.00026 34.4 0.9 39 35-76 68-108 (154)
68 PF14377 DUF4414: Domain of un 41.7 38 0.00083 30.6 4.2 44 519-562 52-105 (108)
69 PF00520 Ion_trans: Ion transp 40.9 1.6E+02 0.0035 28.2 9.0 23 244-266 30-52 (200)
70 KOG4440 NMDA selective glutama 38.7 70 0.0015 37.4 6.4 53 442-494 614-666 (993)
71 COG0662 {ManC} Mannose-6-phosp 35.8 99 0.0021 28.6 6.1 49 587-636 37-86 (127)
72 TIGR03037 anthran_nbaC 3-hydro 29.3 1.3E+02 0.0029 29.3 5.9 36 600-636 43-81 (159)
73 PRK11677 hypothetical protein; 28.2 3.7E+02 0.008 25.5 8.5 9 525-533 49-57 (134)
74 PF08566 Pam17: Mitochondrial 27.4 4.3E+02 0.0094 26.1 9.0 56 467-522 74-132 (173)
75 PF08105 Antimicrobial10: Metc 26.8 53 0.0012 25.1 2.1 16 58-73 28-43 (52)
76 KOG0498 K+-channel ERG and rel 26.5 5.1E+02 0.011 31.6 11.2 40 549-588 371-416 (727)
77 PF02037 SAP: SAP domain; Int 24.3 1.6E+02 0.0034 20.9 4.1 26 507-532 5-35 (35)
78 PRK06771 hypothetical protein; 24.2 3.8E+02 0.0083 23.7 7.1 48 483-530 14-61 (93)
79 PRK11171 hypothetical protein; 23.3 1.9E+02 0.0042 30.5 6.4 50 587-637 185-235 (266)
80 COG4325 Predicted membrane pro 22.9 5.6E+02 0.012 28.7 9.6 62 436-499 127-193 (464)
81 smart00835 Cupin_1 Cupin. This 22.8 1.7E+02 0.0036 27.7 5.4 50 588-637 32-87 (146)
82 PHA03029 hypothetical protein; 21.6 4.4E+02 0.0096 22.1 6.6 38 466-503 3-40 (92)
83 PF07697 7TMR-HDED: 7TM-HD ext 21.5 5E+02 0.011 25.9 8.9 57 550-607 147-207 (222)
84 PF14377 DUF4414: Domain of un 20.9 1.6E+02 0.0034 26.6 4.5 47 519-565 8-67 (108)
85 COG3450 Predicted enzyme of th 20.3 2.5E+02 0.0055 25.9 5.6 30 607-636 64-93 (116)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-91 Score=799.22 Aligned_cols=480 Identities=43% Similarity=0.797 Sum_probs=438.0
Q ss_pred CCeeecCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhceeEe
Q 004529 192 VPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYV 271 (746)
Q Consensus 192 ~~~vI~P~S~~~~~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~t~y~ 271 (746)
..+||+|+|++++.||.+++++++|+++++|++++|+..+++..| +|+.....+.+++.++|++|++||++||||||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 456999999999999999999999999999999999998888888 888889999999999999999999999999999
Q ss_pred cCCccccCCCeEeecHHHHHHHhhhhhhHHHHhhhccccc--------------------------hHHHHHhhhhhhhh
Q 004529 272 APESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ--------------------------YIPRLYKFLPLFAG 325 (746)
Q Consensus 272 ~~~s~~~~~G~lV~d~k~Ia~~Ylk~~F~iDlis~iP~~~--------------------------~llRLlR~~rl~~~ 325 (746)
+++| -++|.||++||+||+++||++|++|++|+++ |++||.|++++++.
T Consensus 144 ~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r 218 (727)
T KOG0498|consen 144 DPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFAR 218 (727)
T ss_pred CCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9854 3799999999999999999999999999987 67888888888888
Q ss_pred cccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccc
Q 004529 326 QSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWK 404 (746)
Q Consensus 326 ~~~~-~~~~~~~~~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~ 404 (746)
+++. +..++++|+....++++|+|++||.||+||++|..+...|+..+
T Consensus 219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------------------- 267 (727)
T KOG0498|consen 219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------------------- 267 (727)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-------------------------------
Confidence 8776 88899999998899999999999999999999998877777653
Q ss_pred cccccCc-CcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHH
Q 004529 405 SWSGNQQ-ASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF 483 (746)
Q Consensus 405 sW~~~~~-~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~f 483 (746)
+|+.... ...|.. ..|+||+ .+++.+|++|+||+++||||+|||+++++|..|++|+|++|++|+++|
T Consensus 268 tw~~~l~~~~~~~~-~~~~fg~----------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~ 336 (727)
T KOG0498|consen 268 TWLGSLGRLLSCYN-LSFTFGI----------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLF 336 (727)
T ss_pred ccccccccccccCc-ccccccc----------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHH
Confidence 2333211 111221 1256776 467779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHH
Q 004529 484 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL 563 (746)
Q Consensus 484 a~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~ 563 (746)
|++||||+++++.+.++..+|+.+++++++||++|+||++||+||++|++|+|..++|+||+++|++||++||++|.+|+
T Consensus 337 A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 337 AYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred HHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HH-HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCC----eEEEcCCCCEEehh
Q 004529 564 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG----IAVCLSEGDACGEE 638 (746)
Q Consensus 564 ~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g----~i~~l~~G~~fGe~ 638 (746)
|. +++++|+|+++|+.++++|+.+++...|.|||+|++|||++++||||++|.+++...+| ....|++||+|||+
T Consensus 417 ~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeE 496 (727)
T KOG0498|consen 417 CLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEE 496 (727)
T ss_pred hHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchH
Confidence 99 99999999999999999999999999999999999999999999999999999998664 78999999999977
Q ss_pred hhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhhcChHHHhHHhhcCchhhhHHHH
Q 004529 639 LLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAI 718 (746)
Q Consensus 639 ~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l~~p~~~~~~r~~s~~~~~~a~~ 718 (746)
.+++++ .. ++++||+|+|.|+++.|+++||.+++++|+ .+++..+++.+|+++..||.+++.
T Consensus 497 l~~~~~------------~~-----p~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~ 558 (727)
T KOG0498|consen 497 LLTWCL------------DL-----PQTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAAC 558 (727)
T ss_pred HHHHHh------------cC-----CCCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhh
Confidence 776642 12 458999999999999999999999999995 788888999999999999999999
Q ss_pred HHHHHHhHHHHHhhhhcCCC
Q 004529 719 VIQVAWRYRKKRLNRADTSH 738 (746)
Q Consensus 719 ~~q~~~~~~~~r~~~~~~~~ 738 (746)
.+|.+|+++.+|+...+.+.
T Consensus 559 ~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 559 FIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred hHHHHHHHHHHhhccchhhh
Confidence 99999999999997766555
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.9e-66 Score=623.79 Aligned_cols=413 Identities=22% Similarity=0.351 Sum_probs=353.0
Q ss_pred CCeeecCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhceeEe
Q 004529 192 VPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYV 271 (746)
Q Consensus 192 ~~~vI~P~S~~~~~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~t~y~ 271 (746)
.+|||+|+++++++||.+++++++|+++++|+.++|... .....+.+++.++|++|++||+++|+|||+
T Consensus 50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~-----------~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~ 118 (823)
T PLN03192 50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA-----------SPKRGLEIADNVVDLFFAVDIVLTFFVAYI 118 (823)
T ss_pred CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC-----------CCCCCeeeHHHHHHHHHHHHHHhheeEEEE
Confidence 367999999999999999999999999999999998421 112347889999999999999999999999
Q ss_pred cCCccccCCCeEeecHHHHHHHhhhhhhHHHHhhhccccc---------------hHHHHHhhhhh---hhhccccchhh
Q 004529 272 APESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ---------------YIPRLYKFLPL---FAGQSSTGFIF 333 (746)
Q Consensus 272 ~~~s~~~~~G~lV~d~k~Ia~~Ylk~~F~iDlis~iP~~~---------------~llRLlR~~rl---~~~~~~~~~~~ 333 (746)
++ ++|.+|.||++|++||+++||++|++|++|++. +++|++|++|+ .+.+.++....
T Consensus 119 d~-----~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~ 193 (823)
T PLN03192 119 DP-----RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDI 193 (823)
T ss_pred eC-----CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 568899999999999999999999999999965 23333444333 33343332111
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccccccccCc
Q 004529 334 --ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQ 411 (746)
Q Consensus 334 --~~~~~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~ 411 (746)
...+..++..+++.++++||+||+||+++.. ....+.+|+....
T Consensus 194 ~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~----------------------------------~~~~~~~Wi~~~~ 239 (823)
T PLN03192 194 RFSYFWIRCARLLSVTLFLVHCAGCLYYLIADR----------------------------------YPHQGKTWIGAVI 239 (823)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------------cCCCCCchHHHhh
Confidence 1122333333444557899999999998842 1123457987520
Q ss_pred CcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 412 ASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQ 491 (746)
Q Consensus 412 ~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~ 491 (746)
+...+.+++.+|++|+|||++|||||||||++|.|..|++|++++|++|+++|||+||+|+
T Consensus 240 -------------------~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~ 300 (823)
T PLN03192 240 -------------------PNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMT 300 (823)
T ss_pred -------------------hccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012378999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHHHH-HHhhh
Q 004529 492 NFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKV 570 (746)
Q Consensus 492 ~il~~~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~~~-~l~~v 570 (746)
+++.+.+++..+|+++++.+++||++++||++||+||++|++|.|. .++.+++++++.||+.||.+|..+++. .++++
T Consensus 301 ~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~-~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~ 379 (823)
T PLN03192 301 NLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFK-AESLNQQQLIDQLPKSICKSICQHLFLPVVEKV 379 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-hccccHHHHHHHcCHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999995 456889999999999999999999999 99999
Q ss_pred hhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecC-C---eEEEcCCCCEEehhhhhhhccc
Q 004529 571 RIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGED-G---IAVCLSEGDACGEELLTWCLEH 646 (746)
Q Consensus 571 ~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~-g---~i~~l~~G~~fGe~~ll~~le~ 646 (746)
++|++++++++.+|+..++.+.|.|||.|+.+||.++.+|||++|+|+++..+ | ++..+++|++|||.+++.+
T Consensus 380 ~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~--- 456 (823)
T PLN03192 380 YLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCC--- 456 (823)
T ss_pred cchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcC---
Confidence 99999999999999999999999999999999999999999999999998633 3 6889999999999999842
Q ss_pred cccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 004529 647 SSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 647 ~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~ 693 (746)
. ++.++++|.+.|+++.|++++|.++++.+|
T Consensus 457 -----------~-----p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p 487 (823)
T PLN03192 457 -----------R-----PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQ 487 (823)
T ss_pred -----------C-----CCCCeEEEcccEEEEEEEHHHHHHHHHHhh
Confidence 1 468999999999999999999999999994
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-64 Score=535.24 Aligned_cols=406 Identities=23% Similarity=0.387 Sum_probs=352.5
Q ss_pred HHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhceeEecCCccccCCCeEeecHHH
Q 004529 210 FVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKK 289 (746)
Q Consensus 210 ~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~t~y~~~~s~~~~~G~lV~d~k~ 289 (746)
+.+.++|++++++...+|...+ +.....|..+++++|++|++||++++||||+ ++|.+|.|-++
T Consensus 3 vs~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyl-------eqGllV~~~~K 66 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYL-------EQGLLVKDTSK 66 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------hcCeeehhhHH
Confidence 3467899999999999997543 3345779999999999999999999999998 57999999999
Q ss_pred HHHHhhhh-hhHHHHhhhccccc-----------hHHHHHhhhhhhhhccccchhhhhhHHHHHHHHHHHH-HHHHHHHH
Q 004529 290 IALNYLRG-YFFIDFFVALPLPQ-----------YIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFT-LSGHIVGS 356 (746)
Q Consensus 290 Ia~~Ylk~-~F~iDlis~iP~~~-----------~llRLlR~~rl~~~~~~~~~~~~~~~~~~i~~ll~~l-l~~H~~aC 356 (746)
.++||+.+ .|.+|++|++|+|+ ++.||+|+.|+...+.++........+..+.+|+.++ +++||.||
T Consensus 67 l~~hY~~s~~f~lD~l~liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaC 146 (536)
T KOG0500|consen 67 LRKHYVHSTQFKLDVLSLIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNAC 146 (536)
T ss_pred HHHHHHHhhhhhhhhhhhcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhH
Confidence 99999998 89999999999998 6789999999988877764333333344466666554 78899999
Q ss_pred HHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccccccccCcCcccccccccccchhhhhhhcccCC
Q 004529 357 GWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTEN 436 (746)
Q Consensus 357 ~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~yg~~~~~~~~~~~~ 436 (746)
++|+|+.. .+.+.++|.+.. ..+ +. | +-....
T Consensus 147 lYf~iS~~----------------------------------~g~~~d~wvY~~-i~d----~~--~-------~~c~~~ 178 (536)
T KOG0500|consen 147 LYFLISKA----------------------------------IGFTTDDWVYPK-IND----PE--F-------ATCDAG 178 (536)
T ss_pred HHHhhhHh----------------------------------cCccccccccCC-ccC----cc--c-------cccchh
Confidence 99999863 223355688752 100 00 0 000114
Q ss_pred chHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 437 SIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMR 516 (746)
Q Consensus 437 ~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~ 516 (746)
++..+|++|+||+..||||+|--..|.+ ..|.+|.|+-.++|+++||.++|++++++.++++.+.+|+.+|+.+++||+
T Consensus 179 n~~ReY~~S~YWStLTlTTiGe~P~P~t-~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~ 257 (536)
T KOG0500|consen 179 NLTREYLYSLYWSTLTLTTIGEQPPPVT-SSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMR 257 (536)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCc-CchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999987776655 699999999999999999999999999999999999999999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHHHH-HHhhhhhccCCCHHHHHHHHhhcceeEecC
Q 004529 517 HRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYIS 595 (746)
Q Consensus 517 ~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ 595 (746)
.|++|..|+.||.+||+|.|.+++..||+++++.||+.|+.+|+.+++. .|+++++|....+.++.+|..+++++.|.|
T Consensus 258 ~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSP 337 (536)
T KOG0500|consen 258 YRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSP 337 (536)
T ss_pred HhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCC
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEccCCcccEEEEEEeeEEEEEecCC--eEEEcCCCCEEehhhhhhhccccccccccccccCCCCcccceeEEEEcc
Q 004529 596 GSKILYRGGLIEKMVFIVRGKMESIGEDG--IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT 673 (746)
Q Consensus 596 ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g--~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt 673 (746)
||+|+++||.+.+||+|.+|.+++..+|| +...+++|++|||+++++ -+|. .-|+| |+++|++++
T Consensus 338 gDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIln--------i~g~---~~gNR--RtanvrSvG 404 (536)
T KOG0500|consen 338 GDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILN--------IKGN---KNGNR--RTANVRSVG 404 (536)
T ss_pred CCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEE--------EcCc---ccCCc--ceeeeeeec
Confidence 99999999999999999999999999998 788999999999999975 2332 22454 699999999
Q ss_pred eEEEEEeeHHHHHHHHHHhH
Q 004529 674 NVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 674 ~~ell~L~~~df~~ll~~~~ 693 (746)
.+++++|+++|+.+++++||
T Consensus 405 YSDlfvLskdDl~~aL~eYP 424 (536)
T KOG0500|consen 405 YSDLFVLSKDDLWEALSEYP 424 (536)
T ss_pred cceeeEeeHHHHHHHHHhCC
Confidence 99999999999999999994
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-65 Score=545.51 Aligned_cols=443 Identities=22% Similarity=0.405 Sum_probs=378.9
Q ss_pred ccCCeeecCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhcee
Q 004529 190 RYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLA 269 (746)
Q Consensus 190 ~~~~~vI~P~S~~~~~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~t~ 269 (746)
+..|.||..++.|+-+||++++++.+|+++++|+.++|...+.+ ...|.+++.++|+||++||++||+|.
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~----------~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRN----------NVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccC----------ceeEEEecchhhhhhhhhhhhhccee
Confidence 45789999999999999999999999999999999999754332 23488899999999999999999999
Q ss_pred EecCCccccCCCeEeecHHHHHHHhhhhhhHHHHhhhccccc---------------hHHHHHhhhhhhhhccccchhhh
Q 004529 270 YVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ---------------YIPRLYKFLPLFAGQSSTGFIFE 334 (746)
Q Consensus 270 y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~~F~iDlis~iP~~~---------------~llRLlR~~rl~~~~~~~~~~~~ 334 (746)
|+.| .|++|.||+.|..+|+|+||++|++|++|++. -.++.+|++||=+..+++..+.|
T Consensus 274 FVGP------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlE 347 (971)
T KOG0501|consen 274 FVGP------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLE 347 (971)
T ss_pred eecC------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 89999999999999999999999999999998 12333333333333444444577
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccccccccCcCcc
Q 004529 335 SAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASD 414 (746)
Q Consensus 335 ~~~~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~ 414 (746)
...+.+++.++.|++++||.||+||.||-+++-. +.......++|+......
T Consensus 348 YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~---------------------------~~~n~i~~dsWL~kLa~~- 399 (971)
T KOG0501|consen 348 YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD---------------------------EMDNTIQPDSWLWKLAND- 399 (971)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeccchheec---------------------------ccccccccchHHHHHHhh-
Confidence 7778888888899999999999999999765321 011222356787654221
Q ss_pred cccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 415 CFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 494 (746)
Q Consensus 415 c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il 494 (746)
....|+|.. ...-.+...++--..|+.|+||.++.|||||+|.+.|.+..|++|++++|++|+++||-++|+++.|+
T Consensus 400 --~~tpY~~~~-s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~ 476 (971)
T KOG0501|consen 400 --IGTPYNYNL-SNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTII 476 (971)
T ss_pred --cCCCceecc-CCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111233321 11112334467778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHHHH-HHhhhhhc
Q 004529 495 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 573 (746)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~~~-~l~~v~lF 573 (746)
|+|.+....|++.++.|.+||+-..+|+.|.+||.+|.--.|...+|+|.+++|...|.++|.+|..|+.+ ..+..|-|
T Consensus 477 QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaF 556 (971)
T KOG0501|consen 477 QQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAF 556 (971)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhhhhhhcccccccccc
Q 004529 574 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDA 653 (746)
Q Consensus 574 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~le~~~~~~~~ 653 (746)
+-.++..+++|+..++.....|||.|++.||..+.++||++|.++++.+|.++++|++||+||++..-..
T Consensus 557 RLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~---------- 626 (971)
T KOG0501|consen 557 RLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKEN---------- 626 (971)
T ss_pred eeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcEEEEeecCccchhHHhhhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred ccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhh
Q 004529 654 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFL 696 (746)
Q Consensus 654 ~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l 696 (746)
.-| .+-++|+|+|.|.+..|.++.+.++++-|..|.
T Consensus 627 ----t~~---qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFa 662 (971)
T KOG0501|consen 627 ----TLG---QSAANVRALTYCDLHMIKRDKLLKVLDFYTAFA 662 (971)
T ss_pred ----hhh---hhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHH
Confidence 113 357899999999999999999999999885543
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-56 Score=481.17 Aligned_cols=415 Identities=23% Similarity=0.393 Sum_probs=371.2
Q ss_pred CCeeecCCC-hHHHHHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHH-hhhcee
Q 004529 192 VPGIMNPHT-RIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNIL-LQFRLA 269 (746)
Q Consensus 192 ~~~vI~P~S-~~~~~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~-l~F~t~ 269 (746)
+|..|||+. +++..|-.++.++..|++|+||+..+|++...+| ...|++.++++|+||++||+ ++=|.-
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~ 286 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQ 286 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhe
Confidence 477999999 9999999999999999999999999999876654 35699999999999999995 566777
Q ss_pred EecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc-----------hHHHHHhhhhhhhhccccchhhhhhH
Q 004529 270 YVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ-----------YIPRLYKFLPLFAGQSSTGFIFESAW 337 (746)
Q Consensus 270 y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~-----------~llRLlR~~rl~~~~~~~~~~~~~~~ 337 (746)
|+ ..|.+|.|.+...+||+++ .|-+|++|++|+++ |++|.|++-.++...+.+..++.+++
T Consensus 287 fv-------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y 359 (815)
T KOG0499|consen 287 FV-------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMSKAY 359 (815)
T ss_pred ee-------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhcchh
Confidence 76 5799999999999999999 89999999999998 56666666666666666677788888
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccccccccCCCCCCCCccccCcccccccccCcCcccc
Q 004529 338 ANFFINLFTFT-LSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCF 416 (746)
Q Consensus 338 ~~~i~~ll~~l-l~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~ 416 (746)
+..++.-+.|| +++|+.||++|+.+-+ +..+.+.|+.+.
T Consensus 360 ~~RV~rT~~YmlyilHinacvYY~~Say----------------------------------qglG~~rWVydg------ 399 (815)
T KOG0499|consen 360 IYRVIRTTGYLLYILHINACVYYWASAY----------------------------------QGLGTTRWVYDG------ 399 (815)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhh----------------------------------cccccceeEEcC------
Confidence 88888877777 6889999999997644 233466798864
Q ss_pred cccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 417 EKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 496 (746)
Q Consensus 417 ~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~ 496 (746)
....|++|+|||+-|++|+|...-| ++..|.+|..+.-+.|+++||.+||.|-.++.+
T Consensus 400 ---------------------~Gn~YiRCyyfa~kt~~tiG~~P~P-~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 400 ---------------------EGNEYIRCYYFAVKTLITIGGLPEP-QTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred ---------------------CCCceeeehhhHHHHHHHhcCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1247999999999999999988776 569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCchhhHHHHHHHHHH-HHhhhhhccC
Q 004529 497 LVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFAL 575 (746)
Q Consensus 497 ~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~~~~-~l~~v~lF~~ 575 (746)
.++.+.+|+..|++.-.||+..+||.+.|.||+.+|+|.|.+++..||.++|+.||..||.+++...+- .+.++.+|++
T Consensus 458 At~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~ 537 (815)
T KOG0499|consen 458 ATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQG 537 (815)
T ss_pred hhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe-cCC--eEEEcCCCCEEehhhhhhhccccccccc
Q 004529 576 MDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG--IAVCLSEGDACGEELLTWCLEHSSVNRD 652 (746)
Q Consensus 576 ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~-~~g--~i~~l~~G~~fGe~~ll~~le~~~~~~~ 652 (746)
++...+..++.+++.+.|.|||+|++.||.+.+||+|..|.|+|.. ++| ++.+|.+|++|||++++.- +
T Consensus 538 Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLai--------g 609 (815)
T KOG0499|consen 538 CDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAI--------G 609 (815)
T ss_pred hHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeee--------c
Confidence 9999999999999999999999999999999999999999999997 555 8899999999999999842 1
Q ss_pred cccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhhcChHHHhHHh
Q 004529 653 AKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIR 706 (746)
Q Consensus 653 ~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l~~p~~~~~~r 706 (746)
| |+ .|+++|+|.+.|.+++|+++|+.+++..| |.-|..+|
T Consensus 610 G------~n--RRTAnV~a~Gf~nLfvL~KkdLneil~~Y------P~sq~iLr 649 (815)
T KOG0499|consen 610 G------GN--RRTANVVAHGFANLFVLDKKDLNEILVHY------PDSQRILR 649 (815)
T ss_pred C------CC--ccchhhhhcccceeeEecHhHHHHHHHhC------ccHHHHHH
Confidence 2 33 37999999999999999999999999999 77666554
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=9.2e-14 Score=151.41 Aligned_cols=171 Identities=17% Similarity=0.258 Sum_probs=115.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhceeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc-----------
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ----------- 311 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F~t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~----------- 311 (746)
...+.+++.++-++|-++.+++|..+- . ..+++|+ --++|++|++||+.
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~P-----------------~--k~~F~k~pLNIIDllAIlPFYielll~~~~~~~ 299 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVAP-----------------N--KLEFFKSPLNIIDLLAILPFYLELLLTLFGGES 299 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcCc-----------------h--HHHHHhCcchHHHHHHHHHHHHHHHHHHhccch
Confidence 456899999999999999999986543 1 2677887 56999999999987
Q ss_pred -----------hHHHHHhhhhhhhh------ccccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhhhhhhhh
Q 004529 312 -----------YIPRLYKFLPLFAG------QSSTGFIFESAWANFFINLFTFT-LSGHIVGSGWYLFGLQRVNQCLRDA 373 (746)
Q Consensus 312 -----------~llRLlR~~rl~~~------~~~~~~~~~~~~~~~i~~ll~~l-l~~H~~aC~wyli~~~~~~~c~~~~ 373 (746)
+++|++|++|++|. ++.++..++..+..+.. |++|+ +-+-+++.+-|++-..
T Consensus 300 ~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~Elgl-LllfL~~GI~iFStlvY~~Ek~--------- 369 (477)
T KOG3713|consen 300 LKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGL-LLLFLAVGIVIFSTLVYFAEKD--------- 369 (477)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc---------
Confidence 34455555554443 22223333333333332 33343 4556677776663210
Q ss_pred cccCCcccccccccCCCCCCCCccccCcccccccccCcCcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhh
Q 004529 374 CHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQI 453 (746)
Q Consensus 374 c~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tm 453 (746)
. + .+.++.--.++|||++||
T Consensus 370 -------------------------~-~----------------------------------~~~FtSIPa~~WWaiVTM 389 (477)
T KOG3713|consen 370 -------------------------E-P----------------------------------DTKFTSIPAGFWWAVVTM 389 (477)
T ss_pred -------------------------C-C----------------------------------CCCCccccchhheeeEEE
Confidence 0 0 000122234889999999
Q ss_pred ccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 454 STLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLD 503 (746)
Q Consensus 454 tTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~ 503 (746)
|||||||+.|.|...++++..+++.|+++.|+-|..|-+=+....+..++
T Consensus 390 TTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 390 TTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKA 439 (477)
T ss_pred eeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999887776655544444333
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.33 E-value=2.3e-11 Score=126.14 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=100.0
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe-cCC---eEEEcCCCCEEehhhhh
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEGDACGEELLT 641 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~-~~g---~i~~l~~G~~fGe~~ll 641 (746)
+++.+++|..++++.++.++...+.+.|++|+.|+++|+.++.+|+|.+|.|+++. .+| ++..+.+|++||+.+++
T Consensus 8 ~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~ 87 (236)
T PRK09392 8 RLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVV 87 (236)
T ss_pred HHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHh
Confidence 68899999999999999999999999999999999999999999999999999986 223 78899999999999887
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 642 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 642 ~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
.. . ++.++++|+++|+++.|++++|.+++.++|.+
T Consensus 88 ~~-----------------~--~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 122 (236)
T PRK09392 88 LD-----------------A--PYLMSARTLTRSRVLMIPAELVREAMSEDPGF 122 (236)
T ss_pred CC-----------------C--CCceEEEEcCceEEEEEeHHHHHHHHHHCHHH
Confidence 31 1 46789999999999999999999999999443
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.26 E-value=1.4e-10 Score=117.94 Aligned_cols=104 Identities=21% Similarity=0.259 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhccccc
Q 004529 574 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSS 648 (746)
Q Consensus 574 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~~~ 648 (746)
+.++++.+++++..++.+.|++|++|+.+|+.++.+|||.+|.++++. .+| .+..+++|++||+..++..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~----- 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE----- 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccC-----
Confidence 568999999999999999999999999999999999999999999985 455 6788999999999988731
Q ss_pred cccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 649 VNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 649 ~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
.. ++..+++|.++|+++.+++++|.+++.++|.+
T Consensus 81 ------------~~-~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 114 (211)
T PRK11753 81 ------------GQ-ERSAWVRAKTACEVAEISYKKFRQLIQVNPDI 114 (211)
T ss_pred ------------CC-CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHH
Confidence 11 35788999999999999999999999999544
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.24 E-value=4.4e-11 Score=119.08 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHhhhceeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc----------------
Q 004529 249 VVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------------- 311 (746)
Q Consensus 249 ~~~~i~d~ifllDI~l~F~t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~---------------- 311 (746)
+++.+++++|.+|+++++++... . +++|+++ |.++|+++++|...
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-------~-----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-------K-----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLL 62 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-------G------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-------H-----------HHHHhcChhhcccccccccccccccccccccccccceE
Confidence 46789999999999999986653 1 6789998 78899999999955
Q ss_pred hHHHHHhhhhhhh---hccccchhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCccccccc
Q 004529 312 YIPRLYKFLPLFA---GQSSTGFIFESAW---ANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKF 385 (746)
Q Consensus 312 ~llRLlR~~rl~~---~~~~~~~~~~~~~---~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c~~~ 385 (746)
++.|++|+.|+++ ..+..+....... ..+...++.+.++.|++||+++.+.......|.
T Consensus 63 ~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~--------------- 127 (200)
T PF00520_consen 63 RIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC--------------- 127 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------------------
T ss_pred EEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccc---------------
Confidence 1333333333333 3333332222211 122223344557889999998876532110000
Q ss_pred ccCCCCCCCCccccCcccccccccCcCcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcccc-
Q 004529 386 LDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSY- 464 (746)
Q Consensus 386 l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~~~- 464 (746)
.. .+.... -.........|..|+||++.++|+.|+||+.+.
T Consensus 128 ----------------~~-~~~~~~---------------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~ 169 (200)
T PF00520_consen 128 ----------------DP-TWDSEN---------------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSC 169 (200)
T ss_dssp --------------------SS-------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHH
T ss_pred ----------------cc-cccccc---------------------ccccccccccccccccccccccccCCcccccccc
Confidence 00 000000 001145667799999999999999999999886
Q ss_pred ----cHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004529 465 ----FVGEVLFT-MAIIGVGLLLFAFLIGNM 490 (746)
Q Consensus 465 ----~~~E~i~~-i~~~i~G~i~fa~iig~i 490 (746)
+..+.++. +++.+.+.++++.++|.|
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 170 MSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 78899988 666666669999998875
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.24 E-value=1.1e-10 Score=104.75 Aligned_cols=102 Identities=26% Similarity=0.438 Sum_probs=91.7
Q ss_pred hccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhccc
Q 004529 572 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEH 646 (746)
Q Consensus 572 lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~ 646 (746)
+|..++++.+..++..++.+.+.+|++|+.+|+..+.+|+|.+|.++++. .+| .+..+.+|++||+..++..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--- 77 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGN--- 77 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcC---
Confidence 47889999999999999999999999999999999999999999999987 333 6788999999999987621
Q ss_pred cccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 647 SSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 647 ~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
. ++..+++|.++|+++.|++++|.+++.++
T Consensus 78 --------------~--~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 107 (115)
T cd00038 78 --------------G--PRSATVRALTDSELLVLPRSDFRRLLQEY 107 (115)
T ss_pred --------------C--CCCceEEEcCceEEEEEeHHHHHHHHHHC
Confidence 1 35789999999999999999999999999
No 11
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=99.22 E-value=2.1e-11 Score=102.21 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=61.0
Q ss_pred ccCCCChhhhhhhccChhhHHHHHHHHhhccCCeeecCCChHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004529 161 SSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLL 228 (746)
Q Consensus 161 ~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~vI~P~S~~~~~Wd~~~~i~~l~~~~~iPl~i~F~ 228 (746)
..++.+||++.++|||++++.+|..++. +..++||||+|+||.+||++|+++++++++++|+.++|.
T Consensus 5 ~~~p~~nk~sl~~f~S~~ai~~E~~R~~-~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 5 LLQPGDNKFSLRVFGSKKAIEKEKERQR-SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred hhccccCHHHHHHHccHHHHHHHHHHHh-cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 3456689999999999999999998876 446789999999999999999999999999999999985
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.20 E-value=1.4e-10 Score=100.63 Aligned_cols=84 Identities=27% Similarity=0.330 Sum_probs=75.3
Q ss_pred eEecCCCEEEccCCcccEEEEEEeeEEEEEec--CC---eEEEcCCCCEEehhhhhhhccccccccccccccCCCCcccc
Q 004529 591 KTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLC 665 (746)
Q Consensus 591 ~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~--~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~~pg~~~~~ 665 (746)
+.|++|++|+++|+..+++|||++|.++++.. +| .+..+.+|++||+..++.. . ++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-----------------~--~~ 62 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTG-----------------K--PS 62 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHT-----------------S--BB
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCC-----------------C--cc
Confidence 67999999999999999999999999999873 33 4789999999999998852 1 36
Q ss_pred eeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 004529 666 NRTVRCLTNVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 666 ~~tV~Alt~~ell~L~~~df~~ll~~~~ 693 (746)
..+++|.++|+++.|++++|.++++++|
T Consensus 63 ~~~~~a~~~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 63 PFTVIALTDSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp SSEEEESSSEEEEEEEHHHHHHHHHHSH
T ss_pred EEEEEEccCEEEEEEeHHHHHHHHHhCc
Confidence 8999999999999999999999999993
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.17 E-value=3.8e-10 Score=101.87 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=91.9
Q ss_pred hccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEec--CC---eEEEcCCCCEEehhhhhhhccc
Q 004529 572 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEH 646 (746)
Q Consensus 572 lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~--~g---~i~~l~~G~~fGe~~ll~~le~ 646 (746)
+|.+++++.+++++..++.+.|.+|++|+++|+..+.+|||.+|.++++.. +| .+..+.+|++||+..++..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--- 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN--- 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC---
Confidence 478899999999999999999999999999999999999999999999873 33 7889999999999987621
Q ss_pred cccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 647 SSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 647 ~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
...++..+++|.++|+++.++.+++.+.+..+
T Consensus 78 --------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 109 (120)
T smart00100 78 --------------SRRAASATAVALELATLLRIDFRDFLQLLQEN 109 (120)
T ss_pred --------------CCcccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence 11135788999999999999999999999998
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.7e-11 Score=127.38 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=43.3
Q ss_pred HHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 444 YSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQ 491 (746)
Q Consensus 444 ~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~ 491 (746)
.|||||++|||||||||..|.+.+.+++..++.|.|++-.|.-+-.|.
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 489999999999999999999999999999999999998888665443
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.09 E-value=1.3e-09 Score=112.80 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=91.3
Q ss_pred HhhhhhccCCCHHHHHHHHhhcce-eEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhh
Q 004529 567 VKKVRIFALMDEPILDAICERLRQ-KTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 640 (746)
Q Consensus 567 l~~v~lF~~ls~~~l~~L~~~l~~-~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 640 (746)
+++.+.|..++++.++.|....+. +.|+||+.|+.+||.++++|+|.+|.|+++. .+| ++..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555667999999999988864 6799999999999999999999999999987 445 6778899999998765
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 641 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 641 l~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
+. + ....+++|+++|+++.|++++|.+++.++|.+
T Consensus 95 ~~-----------------~---~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~ 129 (235)
T PRK11161 95 GS-----------------G---QHPSFAQALETSMVCEIPFETLDDLSGKMPKL 129 (235)
T ss_pred cC-----------------C---CCcceEEEeccEEEEEEEHHHHHHHHHHChHH
Confidence 41 1 13468999999999999999999999999544
No 16
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=3.4e-10 Score=118.68 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=98.8
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhhhhhhcc
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 645 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~le 645 (746)
.+++.-+|++++++.+.++...+..+.+++|+.|++||+.++.+|+|.+|+++|+..+..+..+++|..|||.++..
T Consensus 123 a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmy--- 199 (368)
T KOG1113|consen 123 AFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMY--- 199 (368)
T ss_pred HHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchhhhHhhh---
Confidence 77888999999999999999999999999999999999999999999999999998766899999999999999984
Q ss_pred ccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHH
Q 004529 646 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSL 691 (746)
Q Consensus 646 ~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~ 691 (746)
+. +|.+||.|.+++.+|.|.+..|..++-.
T Consensus 200 -----------n~-----PRaATv~a~t~~klWgldr~SFrrIi~~ 229 (368)
T KOG1113|consen 200 -----------NP-----PRAATVVAKSLKKLWGLDRTSFRRIIMK 229 (368)
T ss_pred -----------CC-----CcccceeeccccceEEEeeceeEEEeec
Confidence 23 4799999999999999999999887643
No 17
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.05 E-value=1.5e-09 Score=111.94 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhcccccccccccc
Q 004529 581 LDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKR 655 (746)
Q Consensus 581 l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~ 655 (746)
..+|....+.+.|++|++|+.+|+..+.+|||.+|.|+++. .+| ++..+.+|++||+.+++..
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~------------ 91 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDK------------ 91 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcC------------
Confidence 34577778889999999999999999999999999999986 456 6788999999999987631
Q ss_pred ccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 656 YRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 656 ~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
. ++..+++|+++|+++.+++++|.+++.++|.+
T Consensus 92 -----~--~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~ 124 (226)
T PRK10402 92 -----D--HETKAVQAIEECWCLALPMKDCRPLLLNDALF 124 (226)
T ss_pred -----C--CCCccEEEeccEEEEEEEHHHHHHHHhcCHHH
Confidence 1 46789999999999999999999999999544
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.05 E-value=2.2e-10 Score=124.71 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=103.7
Q ss_pred HHHHHHH-HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEeh
Q 004529 559 IRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 637 (746)
Q Consensus 559 I~~~~~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe 637 (746)
-..++.+ .+.+..++++++...+.+++..|.++.|.+|++|+++||++.++|.+.+|+++|...+..+..+++|..|||
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFGE 226 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFGE 226 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhhH
Confidence 3445555 788889999999999999999999999999999999999999999999999999987668999999999999
Q ss_pred hhhhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 638 ELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 638 ~~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
.+++..+ +|+++|+|+++|.+|.|.|+-|+.++...
T Consensus 227 LAILync-------------------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 227 LAILYNC-------------------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred HHHHhCC-------------------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999642 47999999999999999999999998543
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.04 E-value=4.2e-10 Score=122.56 Aligned_cols=110 Identities=21% Similarity=0.339 Sum_probs=99.5
Q ss_pred HH-HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCC------eEEEcCCCCEEe
Q 004529 564 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG------IAVCLSEGDACG 636 (746)
Q Consensus 564 ~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g------~i~~l~~G~~fG 636 (746)
+. +|+++|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+. .+..+..||+||
T Consensus 270 ~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FG 349 (732)
T KOG0614|consen 270 YMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFG 349 (732)
T ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhh
Confidence 44 89999999999999999999999999999999999999999999999999999987332 688999999999
Q ss_pred hhhhhhhccccccccccccccCCCCcccceeEEEEcce-EEEEEeeHHHHHHHHHHh
Q 004529 637 EELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTN-VEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 637 e~~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~-~ell~L~~~df~~ll~~~ 692 (746)
|-+++.. . .|+++|.|..+ ++++.|+++.|..++...
T Consensus 350 E~al~~e------------------d-vRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 350 ERALLGE------------------D-VRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred HHHhhcc------------------C-ccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 9999832 2 57899999877 999999999999998766
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-09 Score=120.16 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=103.6
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCC-eEEEcCCCCEEehhhhhhhc
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCL 644 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g-~i~~l~~G~~fGe~~ll~~l 644 (746)
++.+.|.|..++++.+.+|...+....|.+||.|+..|.+.+++|+|.+|.|++..++| .+..+..||.||-.+++...
T Consensus 8 Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~~~ 87 (610)
T COG2905 8 FLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFTEL 87 (610)
T ss_pred HHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhhcccC
Confidence 78899999999999999999999999999999999999999999999999999999999 69999999999999998532
Q ss_pred cccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhhcChHHHhHH
Q 004529 645 EHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 705 (746)
Q Consensus 645 e~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l~~p~~~~~~ 705 (746)
.....+.|.+++-+|.|+++.|.++++++ |.++..+
T Consensus 88 -------------------~~~~~~~aeedsl~y~lp~s~F~ql~~~n------~~f~~ff 123 (610)
T COG2905 88 -------------------NKQRYMAAEEDSLCYLLPKSVFMQLMEEN------PEFADFF 123 (610)
T ss_pred -------------------CCcceeEeeccceEEecCHHHHHHHHHhC------cHHHHHH
Confidence 12456788889999999999999999999 6655544
No 21
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.03 E-value=4.3e-09 Score=106.09 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=92.1
Q ss_pred hhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhh
Q 004529 568 KKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTW 642 (746)
Q Consensus 568 ~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~ 642 (746)
...+.|..++.+....+......+.+++|++|+.+|+.++.+|+|.+|.++++. .+| .+..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 345666767778888888888999999999999999999999999999999987 455 678899999999999984
Q ss_pred hccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 643 CLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 643 ~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
. . ++.++++|+++|+++.+++++|.+++.+.
T Consensus 83 ~-----------------~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T COG0664 83 G-----------------D--PRSASAVALTDVEVLEIPRKDFLELLAES 113 (214)
T ss_pred C-----------------C--CccceEEEcceEEEEEecHHHHHHHHhhC
Confidence 1 1 36899999999999999999999998875
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.03 E-value=3e-09 Score=116.67 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=71.2
Q ss_pred CchHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 436 NSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWM 515 (746)
Q Consensus 436 ~~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM 515 (746)
++-+..|..|+||++.|+|||||||.+|.+...++++.++.++|..+||.--|.+++=++-.-+.+ .+ =++|-
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq--~R-----QKHf~ 336 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQ--HR-----QKHFN 336 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHH--HH-----HHHHH
Confidence 455678999999999999999999999999999999999999999999998888887664322111 11 13455
Q ss_pred HHCCCCHHHHHHHHHHHH
Q 004529 516 RHRRLPEQLRRQVREAER 533 (746)
Q Consensus 516 ~~~~lp~~L~~rV~~y~~ 533 (746)
+.++.-..|.+-.-+||.
T Consensus 337 rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYA 354 (654)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 666666777777766664
No 23
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-10 Score=126.26 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q 004529 439 ITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHR 518 (746)
Q Consensus 439 ~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~~~ 518 (746)
.-.|..|+|+-++||+||||||+...+...++|.++.++.|..+||-.+..|..++.+-++-.-+|+..- .++
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkk 358 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKK 358 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCe
Confidence 3479999999999999999999999999999999999999999999999999999987666555554321 001
Q ss_pred CC--CH-HHHHHHHHHHHHHH-hhhcCCC-hhHHHhcCchhhHHHHHHHHHH-HHhhhhhccC--CCHHHHHH
Q 004529 519 RL--PE-QLRRQVREAERYNW-AATRGVN-EDMLFTNLPEDLQREIRRHLFK-FVKKVRIFAL--MDEPILDA 583 (746)
Q Consensus 519 ~l--p~-~L~~rV~~y~~y~w-~~~~~~~-e~~ll~~Lp~~Lr~~I~~~~~~-~l~~v~lF~~--ls~~~l~~ 583 (746)
++ -. -..+-|-.|++-.. +....+| |--+|...|++|.-| .+++ -..++.+|++ +++..+..
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 00 00 11122333332222 1223344 446788899988654 2334 5667788865 45544443
No 24
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.96 E-value=3.4e-09 Score=119.13 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=94.0
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEec--CC--eEEEcCCCCEEehhhhh
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG--IAVCLSEGDACGEELLT 641 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~--~g--~i~~l~~G~~fGe~~ll 641 (746)
+++++++|+.++++.++.++..++.+.|.+|++|+++|+..+.+|+|.+|.|+++.. +| .+..+++|++||+. +
T Consensus 9 ~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~--l 86 (413)
T PLN02868 9 FLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG--L 86 (413)
T ss_pred HHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--h
Confidence 678999999999999999999999999999999999999999999999999999873 34 67788999999975 3
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 642 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 642 ~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
. +. ++..+++|.++|+++.|++++|..+...+
T Consensus 87 ~-----------------~~--~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 87 S-----------------GS--VHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred C-----------------CC--CcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 2 11 36799999999999999999999887655
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.88 E-value=1e-08 Score=87.68 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQ 495 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~ 495 (746)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999998874
No 26
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.83 E-value=2.8e-08 Score=99.46 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhccccccccccccccCCCCcccceeEEE
Q 004529 596 GSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVR 670 (746)
Q Consensus 596 ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~ 670 (746)
|+.|+++||..+.+|+|.+|.|+++. ++| ++..+++|++||+.+++.. ...++..+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~-----------------~~~~~~~~~~ 63 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITG-----------------HRSDRFYHAV 63 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccC-----------------CCCccceEEE
Confidence 78999999999999999999999986 556 6889999999999887731 1112357899
Q ss_pred EcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 671 CLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 671 Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
|+++|+++.+++++|.+++.++|.+
T Consensus 64 A~~~~~v~~i~~~~~~~l~~~~p~l 88 (193)
T TIGR03697 64 AFTRVELLAVPIEQVEKAIEEDPDL 88 (193)
T ss_pred EecceEEEEeeHHHHHHHHHHChHH
Confidence 9999999999999999999999444
No 27
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.81 E-value=3.5e-08 Score=102.09 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=77.2
Q ss_pred HHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhcccccccccccccc
Q 004529 583 AICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYR 657 (746)
Q Consensus 583 ~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~ 657 (746)
.++.....+.|++|++|+.+||.++++|||.+|.|+++. .+| ++..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~------------------ 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES------------------ 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC------------------
Confidence 355667788999999999999999999999999999986 455 677889999999541
Q ss_pred CCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhh
Q 004529 658 IPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 695 (746)
Q Consensus 658 ~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~ 695 (746)
+. ++..+++|+++|+++.+++++|.+++.++|.+
T Consensus 95 --~~--~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l 128 (230)
T PRK09391 95 --GS--THRFTAEAIVDTTVRLIKRRSLEQAAATDVDV 128 (230)
T ss_pred --CC--cCCeEEEEcCceEEEEEEHHHHHHHHhhChHH
Confidence 11 35689999999999999999999999999544
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.74 E-value=8.2e-08 Score=96.91 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=67.5
Q ss_pred hcceeEecCCCEEEccCC--cccEEEEEEeeEEEEEe--cCC---eEEEcCCCCEEehhhhhhhccccccccccccccCC
Q 004529 587 RLRQKTYISGSKILYRGG--LIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIP 659 (746)
Q Consensus 587 ~l~~~~y~~ge~I~~~Gd--~~~~lYfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~~p 659 (746)
.++.+.|++|++|+++|| ..+.+|+|++|.|+++. .+| ++..+.+|++||+..++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~------------------ 66 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA------------------ 66 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc------------------
Confidence 457788999999999999 77999999999999987 456 78888999999997654
Q ss_pred CCcccceeEEEEcceEEEEEeeHHHH
Q 004529 660 GQRLLCNRTVRCLTNVEAFSLRAADI 685 (746)
Q Consensus 660 g~~~~~~~tV~Alt~~ell~L~~~df 685 (746)
++ ++..+++|+++|+++.|++++|
T Consensus 67 ~~--~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 67 GA--ERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred CC--CCCceEEEcCceEEEEEEHHHc
Confidence 11 3568899999999999998876
No 29
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=3.1e-08 Score=104.19 Aligned_cols=112 Identities=21% Similarity=0.361 Sum_probs=101.0
Q ss_pred HHHH-HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEe-cCCeEEEcCCCCEEehhh
Q 004529 562 HLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDGIAVCLSEGDACGEEL 639 (746)
Q Consensus 562 ~~~~-~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~-~~g~i~~l~~G~~fGe~~ 639 (746)
.|+. +|+++|++..++......++..+....|.+|+.|+.+|+.++.+|+|.+|+|.+.. .+|+...++.|++|||.+
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~a 315 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELA 315 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHH
Confidence 4667 89999999999999999999999999999999999999999999999999999876 345444999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 640 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 640 ll~~le~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
++.. . ++.++|.|.+...+..++++.|+.++.-.
T Consensus 316 l~~~--------------~-----pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 316 LLKN--------------L-----PRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred HHhh--------------c-----hhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9843 3 47899999999999999999999999866
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.9e-09 Score=113.16 Aligned_cols=165 Identities=17% Similarity=0.252 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhceeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc-----------
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ----------- 311 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F~t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~----------- 311 (746)
...++.++..+-+||-.+.+++...+-- .-+++++ -=++|+++++|++.
T Consensus 226 ~~aFFclDTACVmIFT~EYlLRL~aAPs-------------------R~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVS 286 (632)
T KOG4390|consen 226 PVAFFCLDTACVMIFTGEYLLRLFAAPS-------------------RYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVS 286 (632)
T ss_pred ceeeEEecceeEEEeeHHHHHHHHcCch-------------------HHHHHHHHHHHHHHhhhhhhheEEEecCCcccc
Confidence 3456777778888888888888766541 2567888 67899999999987
Q ss_pred ------hHHHHHhhhhhhh---hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcccCCcccc
Q 004529 312 ------YIPRLYKFLPLFA---GQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDC 382 (746)
Q Consensus 312 ------~llRLlR~~rl~~---~~~~~~~~~~~~~~~~i~~ll~~ll~~H~~aC~wyli~~~~~~~c~~~~c~~~~~~~c 382 (746)
|+.|.+|++++.+ +++-+|+..++-...+-+.++...+.+-++|.++|+.-.
T Consensus 287 GaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK------------------- 347 (632)
T KOG4390|consen 287 GAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK------------------- 347 (632)
T ss_pred ceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc-------------------
Confidence 3333333333322 333345544443333333344444556667777666210
Q ss_pred cccccCCCCCCCCccccCcccccccccCcCcccccccccccchhhhhhhcccCCchHHHHHHHHHHHHhhhccccCCCcc
Q 004529 383 KKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTP 462 (746)
Q Consensus 383 ~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~yg~~~~~~~~~~~~~~~~~Yi~SlYwa~~tmtTvGygdi~ 462 (746)
| . +.+.++.--.+||+.++||||+||||..
T Consensus 348 ------g--~------------------------------------------~at~FTsIPaaFWYTIVTmTTLGYGDMV 377 (632)
T KOG4390|consen 348 ------G--S------------------------------------------SATKFTSIPAAFWYTIVTMTTLGYGDMV 377 (632)
T ss_pred ------c--c------------------------------------------cccccccCcHhHhhheeeeeeccccccc
Confidence 0 0 0122223345888999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 004529 463 SYFVGEVLFTMAIIGVGLLLFAFL----IGNMQNFLQA 496 (746)
Q Consensus 463 ~~~~~E~i~~i~~~i~G~i~fa~i----ig~i~~il~~ 496 (746)
|.+...++|..++.+.|+++.|.- +.|.+.|..+
T Consensus 378 p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 378 PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred hHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 999999999999999999998874 4555555543
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.13 E-value=3.7e-05 Score=85.53 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 494 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il 494 (746)
.+..|+||+++|+||+||||+.|.+...++|+++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998877644
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00025 Score=77.50 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 438 IITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRH 517 (746)
Q Consensus 438 ~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~~ 517 (746)
....|+.|++....|..++||||+.|.+...+.++++.-++|+++.|.+++.++-=+ +...--+.|++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999999999999999998876544 333333567888888
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 004529 518 RRLPEQLRRQVREAERYNWA 537 (746)
Q Consensus 518 ~~lp~~L~~rV~~y~~y~w~ 537 (746)
.+|-+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777777777776666664
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.63 E-value=0.00041 Score=75.46 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhccccCCC--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 440 TRYVYSLFWGFQQISTLAGNQ--TPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 494 (746)
Q Consensus 440 ~~Yi~SlYwa~~tmtTvGygd--i~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il 494 (746)
..+..+|+|++.|+||+|||. ++|....-.++.++=+++|.++.|+++|.+-+=+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999998 5677667777788889999999999998764433
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.23 E-value=0.00026 Score=82.42 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEec--CC---eEEEcCCCCEEehhhhhhhccccccccccc
Q 004529 580 ILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG---IAVCLSEGDACGEELLTWCLEHSSVNRDAK 654 (746)
Q Consensus 580 ~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~--~g---~i~~l~~G~~fGe~~ll~~le~~~~~~~~~ 654 (746)
++..+-..+......+|+.++++||..+.+|+|+.|.++.... +| .+..++.||.+|+...++.
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~----------- 568 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTK----------- 568 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhc-----------
Confidence 4555556677788999999999999999999999999998763 22 6788999999999988752
Q ss_pred cccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhH
Q 004529 655 RYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 655 ~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~ 693 (746)
+ +|..|+.|+-++++.+|+..-|..+..+||
T Consensus 569 ------~--~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 569 ------Q--PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred ------C--CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 2 467899999999999999999999999993
No 35
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.19 E-value=0.014 Score=55.38 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=89.9
Q ss_pred hcc--CCCHHHHHHHHhh-cceeEecCCCEEEccC-CcccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhhhhhhcccc
Q 004529 572 IFA--LMDEPILDAICER-LRQKTYISGSKILYRG-GLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHS 647 (746)
Q Consensus 572 lF~--~ls~~~l~~L~~~-l~~~~y~~ge~I~~~G-d~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~le~~ 647 (746)
+|+ +.+....+.|+.. .+.....+|+.-.-|| .+.|.+-++++|++.|..++..+..+.|-++.....+... +
T Consensus 9 lF~Pl~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~--~- 85 (153)
T PF04831_consen 9 LFQPLKVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESL--R- 85 (153)
T ss_pred hccCcCCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhcc--c-
Confidence 454 3588888888877 5667899999988888 6678999999999999987667888888888876665431 0
Q ss_pred ccccccccccCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHhhhcChHHHhHHh
Q 004529 648 SVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIR 706 (746)
Q Consensus 648 ~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~~l~~p~~~~~~r 706 (746)
|+....-..|+.|.++|..++.+|+.+..++... |-++..+.
T Consensus 86 -----------~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~------~~L~~vF~ 127 (153)
T PF04831_consen 86 -----------PSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKD------PFLAAVFS 127 (153)
T ss_pred -----------cCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC------HHHHHHHH
Confidence 1111145789999999999999999999999998 76666664
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00073 Score=75.73 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 499 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~ 499 (746)
.+..|+|++++++||+|||++.|.+.++++++|+..++|.-++..+++.++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999866533
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.11 E-value=0.014 Score=58.84 Aligned_cols=94 Identities=9% Similarity=-0.037 Sum_probs=73.6
Q ss_pred HHHHHHhhcceeEecCCCEE-EccCCcccEEEEEEeeEEEEEecCC-eEEEcCCCCEEehhhhhhhcccccccccccccc
Q 004529 580 ILDAICERLRQKTYISGSKI-LYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYR 657 (746)
Q Consensus 580 ~l~~L~~~l~~~~y~~ge~I-~~~Gd~~~~lYfI~~G~V~v~~~~g-~i~~l~~G~~fGe~~ll~~le~~~~~~~~~~~~ 657 (746)
..+.+........+.+|..+ .......+.+++|++|.|.+...|+ .+.+..+..+||-...+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~~-------------- 79 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMK-------------- 79 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccCC--------------
Confidence 34555666677889999997 4444444679999999999976777 7788899999997665421
Q ss_pred CCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHh
Q 004529 658 IPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 658 ~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~ 692 (746)
. ...+.++|.++|+++.++.++|.+++++.
T Consensus 80 --~---~~~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 80 --N---DIPYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred --C---CceEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 1 12468999999999999999999999988
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.56 E-value=0.013 Score=68.92 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=78.1
Q ss_pred HHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCC-----eEEEcCCCCEEehhh-hhhhccccccccccccc
Q 004529 583 AICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-----IAVCLSEGDACGEEL-LTWCLEHSSVNRDAKRY 656 (746)
Q Consensus 583 ~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g-----~i~~l~~G~~fGe~~-ll~~le~~~~~~~~~~~ 656 (746)
+++..++...+..|++|++.|+..+.+|.+.+|.+++...+| .+..+.+|+.|-... ++..+ .
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l-----------~ 178 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSL-----------P 178 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhc-----------c
Confidence 344778888999999999999999999999999999987555 688899997776543 43221 1
Q ss_pred cCCCCcccceeEEEEcceEEEEEeeHHHHHHHHHHhHh
Q 004529 657 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 694 (746)
Q Consensus 657 ~~pg~~~~~~~tV~Alt~~ell~L~~~df~~ll~~~~~ 694 (746)
..|. ..++..++|.++|.+..++...|.++...||+
T Consensus 179 ~~ps--~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~ 214 (1158)
T KOG2968|consen 179 GFPS--LSRTIAAKAATDCTVARIPYTSFRESFHKNPE 214 (1158)
T ss_pred CCCc--ccceeeeeeecCceEEEeccchhhhhhccChH
Confidence 1221 13467789999999999999999999999943
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.45 E-value=0.01 Score=67.36 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=89.6
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEe-cCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhhhhhhc
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTY-ISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCL 644 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y-~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~l 644 (746)
++.+.|-|.+++-...++||..|..... .+|.+|+..|+.-+..+.|+.|.|++..++|....+.-|+-||...-...
T Consensus 282 FMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT~dk- 360 (1283)
T KOG3542|consen 282 FMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPTPDK- 360 (1283)
T ss_pred HHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCCcch-
Confidence 7788899999999999999999886654 68999999999999999999999999999998899999999997644311
Q ss_pred cccccccccccccCCCCcccceeEE-EEcceEEEEEeeHHHHHHHHHHh
Q 004529 645 EHSSVNRDAKRYRIPGQRLLCNRTV-RCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 645 e~~~~~~~~~~~~~pg~~~~~~~tV-~Alt~~ell~L~~~df~~ll~~~ 692 (746)
. ...-.+ .-+.+|+..+|...|+-.++..-
T Consensus 361 -----------------q-ym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 361 -----------------Q-YMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred -----------------h-hhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 0 011123 34789999999999999999766
No 40
>PLN03223 Polycystin cation channel protein; Provisional
Probab=96.00 E-value=0.67 Score=57.63 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 467 GEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKR 500 (746)
Q Consensus 467 ~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~ 500 (746)
+-..|..+++++..++.-++|+.|..-++.....
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345666666666677777777777776665443
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.045 Score=59.23 Aligned_cols=56 Identities=9% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhccccCCCcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSY--FVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 496 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~--~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~ 496 (746)
....||-|++-|=||+|||--.++ -..-.+..++=+++|+++-|+++|.+-+=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678888899999999974433 33334555666788999999999877655543
No 42
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.037 Score=61.59 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhccccCCCcccccHHH
Q 004529 443 VYSLFWGFQQISTLAGNQTPSYFVGE 468 (746)
Q Consensus 443 i~SlYwa~~tmtTvGygdi~~~~~~E 468 (746)
..|+|+.++|.+||||||..|.-..-
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~s 244 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWAS 244 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchh
Confidence 34889999999999999999874333
No 43
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.016 Score=61.10 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhccccCCCcccccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFV--------GEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR 501 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~--------~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~ 501 (746)
.|..|+|+.++|+||+|+||..+--. .=+.++.+.+++|+.+++-+++.+.-.+..++...
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~ 254 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAED 254 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 58899999999999999999765322 12367888999999998888887777666665543
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.31 E-value=0.3 Score=58.15 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=64.2
Q ss_pred cCCeeecCCChHHH---------HHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCc-ch-hhHHHHHHHHHHHH
Q 004529 191 YVPGIMNPHTRIVQ---------QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPW-TK-AIVVVRSMTDLIYF 259 (746)
Q Consensus 191 ~~~~vI~P~S~~~~---------~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~-~~-~~~~~~~i~d~ifl 259 (746)
|-.+++.|.++||. .+|.+++++++++++++.+.-.- ++... .. .+.+-++++..||+
T Consensus 1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~-----------i~~~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPA-----------IVEGSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccc-----------cccCcceEEEEEecchHHHHHHH
Confidence 44568899998873 45666666666666665543210 11111 11 22344589999999
Q ss_pred HHHHhhhc-eeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHH----hhhccccc--------hHHHHHhhhhhhhh
Q 004529 260 LNILLQFR-LAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDF----FVALPLPQ--------YIPRLYKFLPLFAG 325 (746)
Q Consensus 260 lDI~l~F~-t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDl----is~iP~~~--------~llRLlR~~rl~~~ 325 (746)
.++.+.-. .|.+. |+ .-|+++ |-.+|. +|+|-+.+ +++..+|.+|+++.
T Consensus 1171 ~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRt 1233 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRT 1233 (1956)
T ss_pred HHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999865 56542 33 679987 866664 45555543 45555555555444
Q ss_pred cc
Q 004529 326 QS 327 (746)
Q Consensus 326 ~~ 327 (746)
++
T Consensus 1234 lR 1235 (1956)
T KOG2302|consen 1234 LR 1235 (1956)
T ss_pred hh
Confidence 33
No 45
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.0099 Score=62.66 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQ 491 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~ 491 (746)
+..-|||||.+.+||+|||-.+|.+.+.++|+|+..++|+-+--.++..++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 677899999999999999999999999999999999999866555444433
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=91.86 E-value=0.041 Score=61.56 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhccccCCCcccccHHHH--------HHHHHHHHHHHHHHHHHH
Q 004529 441 RYVYSLFWGFQQISTLAGNQTPSYFVGEV--------LFTMAIIGVGLLLFAFLI 487 (746)
Q Consensus 441 ~Yi~SlYwa~~tmtTvGygdi~~~~~~E~--------i~~i~~~i~G~i~fa~ii 487 (746)
-|+.|+|++++++||||+||+.|.+...+ .+..+.+++|....+...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 68889999999999999999999987755 577788888888777766
No 47
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.08 E-value=27 Score=42.63 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccCcceeeecCCcchhhHHHHHHHHHHHHHHHHhhhc-eeEecCCccccCCCeE
Q 004529 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFR-LAYVAPESRVVGAGEL 283 (746)
Q Consensus 205 ~Wd~~~~i~~l~~~~~iPl~i~F~~~~~~~~c~~~~~~~~~~~~~~~~i~d~ifllDI~l~F~-t~y~~~~s~~~~~G~l 283 (746)
+++.+-+++++++++..-++ -+-. +--|. .+--..+..|+-++-++|.++|++... .|.+.+
T Consensus 80 wfe~vsmlvillncvtlgmf--rpce--d~~c~---s~rc~ilqafddfifaffavemv~kmvalgifgk---------- 142 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMF--RPCE--DMDCL---SDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK---------- 142 (1956)
T ss_pred HHHHHHHHHHHHhhhhhccc--ccch--hcccc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Confidence 45777778888887765432 1211 11121 122356788999999999999999976 576643
Q ss_pred eecHHHHHHHhhhh-hhHHHHhhhccc----cc-------hHHHHHhhhhhhhhcccc
Q 004529 284 VDHPKKIALNYLRG-YFFIDFFVALPL----PQ-------YIPRLYKFLPLFAGQSST 329 (746)
Q Consensus 284 V~d~k~Ia~~Ylk~-~F~iDlis~iP~----~~-------~llRLlR~~rl~~~~~~~ 329 (746)
|-||-. |-=+|++-++-- .+ -..|-+|++|=++.+.+.
T Consensus 143 --------kcylgdtwnrldffiv~agm~eysldlqnvslsairtvrvlrplrainrv 192 (1956)
T KOG2302|consen 143 --------KCYLGDTWNRLDFFIVMAGMVEYSLDLQNVSLSAIRTVRVLRPLRAINRV 192 (1956)
T ss_pred --------cccccCchhhhhhhheehhhhhhcccccccchhhhhhhhhhhhhhHhccC
Confidence 567744 766676655432 11 345556666656555543
No 48
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.20 E-value=0.47 Score=54.45 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHhhhhhccCCCHHHHHHHHhhcceeEecCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhhhhhhcc
Q 004529 566 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 645 (746)
Q Consensus 566 ~l~~v~lF~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~le 645 (746)
.|.....|.++-..-++++|...+...++...++|+.|+.+...|++++|.|-+-. ...-|-.+||...
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----qi~mp~~~fgkr~------ 106 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----QIYMPYGCFGKRT------ 106 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----ceecCcccccccc------
Confidence 67778899999999999999999999999999999999999999999999987643 3344555677432
Q ss_pred ccccccccccccCCCCcccceeEEEEcceEEEEEee
Q 004529 646 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLR 681 (746)
Q Consensus 646 ~~~~~~~~~~~~~pg~~~~~~~tV~Alt~~ell~L~ 681 (746)
|+ .|..+.-.++.+|+.+++
T Consensus 107 --------------g~--~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 107 --------------GQ--NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --------------cc--ccccceeeecccceeeee
Confidence 33 256777888888888884
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.71 E-value=4.2 Score=52.87 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhceeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc-----------
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ----------- 311 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F~t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~----------- 311 (746)
...+..++++.-.+|.+++++... +| |... |+++ |.++|++.++-.-.
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~i-a~----------Gf~~---------y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ 930 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWI-AY----------GFFF---------YFRNAWNWLDFVVVIVSLISLIASLKILSL 930 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-Hh----------HHHH---------HHhhHHhhhhHHHhhhHHHHHHHhhhhhhH
Confidence 466889999999999999999853 22 2211 9998 99999976654433
Q ss_pred -hHHHHHhhhhhhhhccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004529 312 -YIPRLYKFLPLFAGQSSTGFI--FESAWANFFINLFTFTLSGHIVGSGWYLFGLQ 364 (746)
Q Consensus 312 -~llRLlR~~rl~~~~~~~~~~--~~~~~~~~i~~ll~~ll~~H~~aC~wyli~~~ 364 (746)
+.+|.+|.+|-++.+++.... +-......+.+++..+++.+++=+++-.+|++
T Consensus 931 ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~ 986 (1592)
T KOG2301|consen 931 IKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQ 986 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555443111 11112222333444445555544455555543
No 50
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.15 E-value=95 Score=37.48 Aligned_cols=75 Identities=25% Similarity=0.324 Sum_probs=55.6
Q ss_pred ccccCCCcccccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHH
Q 004529 454 STLAGNQTPSYFV------GEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR-LDMSLRRRDVEQWMRHRRLPEQLRR 526 (746)
Q Consensus 454 tTvGygdi~~~~~------~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~yM~~~~lp~~L~~ 526 (746)
.|+|+||.+.... .-.+|.++++++.++++-.+|+.|++........+ ++.+.+. ..--.|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 5899999876532 24466777778888888899999999988887776 6665544 33446778899999988
Q ss_pred HHH
Q 004529 527 QVR 529 (746)
Q Consensus 527 rV~ 529 (746)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 843
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=76.93 E-value=4.5 Score=32.79 Aligned_cols=45 Identities=27% Similarity=0.240 Sum_probs=34.6
Q ss_pred eEecCCCEEEccCCccc-EEEEEEeeEEEEEecCCeEEEcCCCCEEe
Q 004529 591 KTYISGSKILYRGGLIE-KMVFIVRGKMESIGEDGIAVCLSEGDACG 636 (746)
Q Consensus 591 ~~y~~ge~I~~~Gd~~~-~lYfI~~G~V~v~~~~g~i~~l~~G~~fG 636 (746)
..+.||+.+-..-.... .+++|++|++.+. .+|....+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGERVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEEEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEEeEccCCEEEE
Confidence 46788887655554555 8999999999998 566778899998764
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=73.58 E-value=11 Score=37.46 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh--hcCCChhHHHhcC--chhhHHHHHHH
Q 004529 505 SLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAA--TRGVNEDMLFTNL--PEDLQREIRRH 562 (746)
Q Consensus 505 ~~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~I~~~ 562 (746)
++-+++++.+++ ++|++-++.+.+||+-.... ..|.+|+++.++| |.++-+++..+
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 345677888997 59999999999999988763 4578899999997 66666666554
No 53
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.15 E-value=47 Score=43.70 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhc-eeEecCCccccCCCeEeecHHHHHHHhhhh-hhHHHHhhhccccc
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQFR-LAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ 311 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F~-t~y~~~~s~~~~~G~lV~d~k~Ia~~Ylk~-~F~iDlis~iP~~~ 311 (746)
...+.+.+.++-.+|.+++.+... .++ ..|+++ |.++|.+-++ +..
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~al~~---------------------~~yF~~~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIYALGP---------------------RNYFRRGWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc---------------------HHHHhhhcchheEEEEe-hhh
Confidence 345677777888888889888642 222 567766 7788877666 443
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=69.94 E-value=21 Score=33.23 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=34.0
Q ss_pred eeEecCCCEEEccCCcccEEEEEEeeEEEEE-ecCCeEEEcCCCCEEe
Q 004529 590 QKTYISGSKILYRGGLIEKMVFIVRGKMESI-GEDGIAVCLSEGDACG 636 (746)
Q Consensus 590 ~~~y~~ge~I~~~Gd~~~~lYfI~~G~V~v~-~~~g~i~~l~~G~~fG 636 (746)
...+.||..+-..-....++++|++|++.+. ..+|....+.+||.+-
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~ 86 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYA 86 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEE
Confidence 3467888755332111246999999999998 5567889999999876
No 55
>COG4709 Predicted membrane protein [Function unknown]
Probab=69.28 E-value=22 Score=35.23 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh--hcCCChhHHHhcC--chhhHHHHHHHH
Q 004529 506 LRRRDVEQWMRHRRLPEQLRRQVREAERYNWAA--TRGVNEDMLFTNL--PEDLQREIRRHL 563 (746)
Q Consensus 506 ~~~~~v~~yM~~~~lp~~L~~rV~~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~I~~~~ 563 (746)
+-++++++|++ ++|++.++.+..||+-++.. ..|.+|+++.++| |.++-.|+..+.
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~ 64 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSER 64 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHc
Confidence 34667788875 69999999999999877763 3678899999987 555555555543
No 56
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=67.99 E-value=2.9e+02 Score=33.71 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 466 VGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKR 500 (746)
Q Consensus 466 ~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~ 500 (746)
.+-.+|.++.+++..++.-.+|+.|++..+.....
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~ 621 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD 621 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 34556666666666677777777777777666444
No 57
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=67.63 E-value=9.9 Score=31.86 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=31.5
Q ss_pred cCCCEEEccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEe
Q 004529 594 ISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 636 (746)
Q Consensus 594 ~~ge~I~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fG 636 (746)
.||..-..-. .+++.+|++|.|.+...+|....+++||.|=
T Consensus 15 ~pg~~~~~~~--~~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYP--EDEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEES--SEEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred CCceeEeeCC--CCEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 4555433322 2778899999999999999889999999875
No 58
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.31 E-value=4.2e+02 Score=34.25 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCHH
Q 004529 471 FTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDM--SLRRRDVEQWMRHRRLPEQ 523 (746)
Q Consensus 471 ~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~--~~~~~~v~~yM~~~~lp~~ 523 (746)
+++++.+.-+++.-.+|+....++.+......++ -++...|.+|=.+=-||+.
T Consensus 1019 l~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPP 1073 (1381)
T KOG3614|consen 1019 LVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPP 1073 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 3444444455666666666666666665544433 3556667776555455543
No 59
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.71 E-value=2.8e+02 Score=33.91 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhccccCCC
Q 004529 442 YVYSLFWGFQQISTLAGNQ 460 (746)
Q Consensus 442 Yi~SlYwa~~tmtTvGygd 460 (746)
=..+++|++-.++-++--+
T Consensus 554 S~~tLFWsiFglv~~~~~~ 572 (822)
T KOG3609|consen 554 SSKTLFWSIFGLVVLGSVV 572 (822)
T ss_pred HHHHHHHHHHhccccccee
Confidence 3458999998776655333
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=60.95 E-value=12 Score=35.19 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 437 SIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMR 516 (746)
Q Consensus 437 ~~~~~Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~ 516 (746)
........++++.+.+++. +.++..|.+...+++.++..+++.++.+...|++++++..- +++..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHH
Confidence 4455677788888877766 56678889999999999999999999999999999998643 22334556666655
Q ss_pred HC
Q 004529 517 HR 518 (746)
Q Consensus 517 ~~ 518 (746)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 55
No 61
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=58.02 E-value=36 Score=27.10 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 004529 466 VGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR---LDMSLRRRDVEQWMRH 517 (746)
Q Consensus 466 ~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~---~~~~~~~~~v~~yM~~ 517 (746)
....++.++++++-+++++.+-+-+-.++++.+.++ .+.++|++.+-+.+++
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 344566665544444444444444555555543333 3578888888777653
No 62
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.47 E-value=6e+02 Score=31.46 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhhh
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQF 266 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F 266 (746)
...|.+++.++.++.++-++++-
T Consensus 497 ~s~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 497 RSKWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888777776653
No 63
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=44.89 E-value=44 Score=30.92 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=41.3
Q ss_pred cceeEecCCCEEEccCCc-ccEEEEEEeeEEEEEecCCeEEEcCCCCEEehhh
Q 004529 588 LRQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACGEEL 639 (746)
Q Consensus 588 l~~~~y~~ge~I~~~Gd~-~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ 639 (746)
+....+.||+.+-..--+ .+...+|++|++++... |....+.+||++-...
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEECC
Confidence 345668899888776665 77899999999999887 8888999999987553
No 64
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=43.93 E-value=5.6e+02 Score=31.75 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=10.2
Q ss_pred hHHHHHhhhhhhhhcc
Q 004529 312 YIPRLYKFLPLFAGQS 327 (746)
Q Consensus 312 ~llRLlR~~rl~~~~~ 327 (746)
|++|+.|+.+++..+.
T Consensus 175 rl~Rl~ri~~~~~~le 190 (823)
T PLN03192 175 RFWRLRRVKQLFTRLE 190 (823)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666767777766543
No 65
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=43.74 E-value=2.7e+02 Score=31.38 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 004529 245 KAIVVVRSMTDLIYFLNILLQF 266 (746)
Q Consensus 245 ~~~~~~~~i~d~ifllDI~l~F 266 (746)
..|.+++.++-++.++=+++.+
T Consensus 242 ~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 242 SFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 4466666665555555455444
No 66
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=43.12 E-value=1.1e+02 Score=34.16 Aligned_cols=63 Identities=8% Similarity=0.240 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHhhhccccCCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 437 SIITRYVYSLFWGFQQISTLAGNQT--PSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR 501 (746)
Q Consensus 437 ~~~~~Yi~SlYwa~~tmtTvGygdi--~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~ 501 (746)
...--|+-++-+++..+.+++.++. .|. .. ..+++++.+++.+.+.+.|.+++..++--+--.
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~-~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~ 160 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPR-LS-VFIALALAILSVVLLIYFIHHIARSIQVSNIIA 160 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3455688888888888888885554 343 33 888889999999999999999988886544333
No 67
>PF15028 PTCRA: Pre-T-cell antigen receptor; PDB: 3OF6_E.
Probab=41.78 E-value=12 Score=34.45 Aligned_cols=39 Identities=41% Similarity=0.485 Sum_probs=23.1
Q ss_pred cccceeeeecCCCCCCCCCcccccccCCC--CcccCCccccccc
Q 004529 35 TRSASMSITMNSTDSFEPEANLVGLTGPL--RNERRTQFLQMSG 76 (746)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (746)
|.=|-+|.|-..++.+| .||-||||= ...|.|+=.|.||
T Consensus 68 tslaqLSlpsEelaaWE---~LVCHtgPg~~~~~~sT~PLqLsg 108 (154)
T PF15028_consen 68 TSLAQLSLPSEELAAWE---PLVCHTGPGAGGHSRSTQPLQLSG 108 (154)
T ss_dssp EEEEEEEEETTCGGGS----SBEEEE--TTSSS-EE---B----
T ss_pred eeeehhcCCHHHhhccc---ceeeecCCCCCCCCCCCCceEecc
Confidence 45678999999989998 899999997 3445788888888
No 68
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=41.73 E-value=38 Score=30.63 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHhh----------hcCCChhHHHhcCchhhHHHHHHH
Q 004529 519 RLPEQLRRQVREAERYNWAA----------TRGVNEDMLFTNLPEDLQREIRRH 562 (746)
Q Consensus 519 ~lp~~L~~rV~~y~~y~w~~----------~~~~~e~~ll~~Lp~~Lr~~I~~~ 562 (746)
-||+++|..|...+.-.-.. ....|...+|..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 48999999999988765331 122445689999999999998764
No 69
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=40.85 E-value=1.6e+02 Score=28.24 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhhh
Q 004529 244 TKAIVVVRSMTDLIYFLNILLQF 266 (746)
Q Consensus 244 ~~~~~~~~~i~d~ifllDI~l~F 266 (746)
...|.+++.++.+...++.++..
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~ 52 (200)
T PF00520_consen 30 RSWWNWFDFISVIPSIVSVILRS 52 (200)
T ss_dssp CSHHHHHHHHHHHHHCCHHCCHC
T ss_pred cChhhcccccccccccccccccc
Confidence 34678888888777777777654
No 70
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=38.69 E-value=70 Score=37.36 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 442 YVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 494 (746)
Q Consensus 442 Yi~SlYwa~~tmtTvGygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il 494 (746)
...++||+-..+..-|-|.-+|.+..-+++.|++..+.+++-|-..+|+++++
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 34477777777777788888999999999999999999999888889998877
No 71
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.80 E-value=99 Score=28.64 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred hcceeEecCCCEE-EccCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEe
Q 004529 587 RLRQKTYISGSKI-LYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 636 (746)
Q Consensus 587 ~l~~~~y~~ge~I-~~~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fG 636 (746)
.+....+.||+-+ .+--...++.|+|++|...+... +....+++|+.+=
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~~~~v~~gd~~~ 86 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GEEVEVKAGDSVY 86 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CEEEEecCCCEEE
Confidence 3455667888875 44444478999999999998875 4556777887653
No 72
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=29.30 E-value=1.3e+02 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=27.3
Q ss_pred EccCCcccEEEEEEeeEEEEEecC-C--eEEEcCCCCEEe
Q 004529 600 LYRGGLIEKMVFIVRGKMESIGED-G--IAVCLSEGDACG 636 (746)
Q Consensus 600 ~~~Gd~~~~lYfI~~G~V~v~~~~-g--~i~~l~~G~~fG 636 (746)
++..+ .++++++++|.+.+-..+ | ....+.+||+|=
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fl 81 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFL 81 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEE
Confidence 44433 789999999999986644 4 477899999874
No 73
>PRK11677 hypothetical protein; Provisional
Probab=28.20 E-value=3.7e+02 Score=25.47 Aligned_cols=9 Identities=11% Similarity=0.099 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 004529 525 RRQVREAER 533 (746)
Q Consensus 525 ~~rV~~y~~ 533 (746)
++.|.++|.
T Consensus 49 kqeV~~HFa 57 (134)
T PRK11677 49 RQELVSHFA 57 (134)
T ss_pred HHHHHHHHH
Confidence 445555555
No 74
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=27.36 E-value=4.3e+02 Score=26.11 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCH
Q 004529 467 GEVLFTMAIIGVGLLLFAFLIG-NMQNFLQALV--KRRLDMSLRRRDVEQWMRHRRLPE 522 (746)
Q Consensus 467 ~E~i~~i~~~i~G~i~fa~iig-~i~~il~~~~--~~~~~~~~~~~~v~~yM~~~~lp~ 522 (746)
.+-++.+.++.+++...+|++| .+++.+=.+. +...++..|-.+.-+-.+++++++
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4567788888888888899887 4555443332 233555666666666667777765
No 75
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=26.77 E-value=53 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.0
Q ss_pred cccCCCCcccCCcccc
Q 004529 58 GLTGPLRNERRTQFLQ 73 (746)
Q Consensus 58 ~~~~~~~~~~~~~~~~ 73 (746)
-|-||++..|++||..
T Consensus 28 r~qgpiFDTRPSPFNP 43 (52)
T PF08105_consen 28 RRQGPIFDTRPSPFNP 43 (52)
T ss_pred hccCCCCCCCCCCCCC
Confidence 4789999999999975
No 76
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.54 E-value=5.1e+02 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=31.5
Q ss_pred hcCchhhHHHHHHHHHH-HHh-----hhhhccCCCHHHHHHHHhhc
Q 004529 549 TNLPEDLQREIRRHLFK-FVK-----KVRIFALMDEPILDAICERL 588 (746)
Q Consensus 549 ~~Lp~~Lr~~I~~~~~~-~l~-----~v~lF~~ls~~~l~~L~~~l 588 (746)
.+||++||+.|..+... ... .-.++++++++....|+..+
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 36999999999999876 433 45788899998888877665
No 77
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.33 E-value=1.6e+02 Score=20.85 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHHH
Q 004529 507 RRRDVEQWMRHRRLP-----EQLRRQVREAE 532 (746)
Q Consensus 507 ~~~~v~~yM~~~~lp-----~~L~~rV~~y~ 532 (746)
++.++.++++.++|| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 467889999999998 67888888874
No 78
>PRK06771 hypothetical protein; Provisional
Probab=24.17 E-value=3.8e+02 Score=23.67 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 004529 483 FAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVRE 530 (746)
Q Consensus 483 fa~iig~i~~il~~~~~~~~~~~~~~~~v~~yM~~~~lp~~L~~rV~~ 530 (746)
|.|+.-.++.+...++++....+.+++.+.+.+.--...+.+-.++++
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 345556677777777777787787877777766544443233333433
No 79
>PRK11171 hypothetical protein; Provisional
Probab=23.33 E-value=1.9e+02 Score=30.55 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=39.8
Q ss_pred hcceeEecCCCEEEc-cCCcccEEEEEEeeEEEEEecCCeEEEcCCCCEEeh
Q 004529 587 RLRQKTYISGSKILY-RGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 637 (746)
Q Consensus 587 ~l~~~~y~~ge~I~~-~Gd~~~~lYfI~~G~V~v~~~~g~i~~l~~G~~fGe 637 (746)
.+....+.||..+-. .....++.++|++|++.+.. ++....+.+||++--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-~~~~~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-NNDWVEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-CCEEEEeCCCCEEEE
Confidence 455677999999876 35667789999999999864 567888999998753
No 80
>COG4325 Predicted membrane protein [Function unknown]
Probab=22.95 E-value=5.6e+02 Score=28.67 Aligned_cols=62 Identities=5% Similarity=0.140 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHHhhhcccc-----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 436 NSIITRYVYSLFWGFQQISTLA-----GNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 499 (746)
Q Consensus 436 ~~~~~~Yi~SlYwa~~tmtTvG-----ygdi~~~~~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~ 499 (746)
.-....++-.|=+++..+.||| +|-..|. .-...+++..++..+.+.|++-+++-.++--+.
T Consensus 127 qvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~--~avtv~lLlaiisig~~iyfl~~l~~siq~~n~ 193 (464)
T COG4325 127 QVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK--VAVTVSLLLAIISIGALIYFLHHLMHSIQIDNI 193 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccccceeh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888889999998 2344443 344556667777777788888887766654433
No 81
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=22.85 E-value=1.7e+02 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred cceeEecCCCEEEccCC-cccEEEEEEeeEEEEEecC--C---eEEEcCCCCEEeh
Q 004529 588 LRQKTYISGSKILYRGG-LIEKMVFIVRGKMESIGED--G---IAVCLSEGDACGE 637 (746)
Q Consensus 588 l~~~~y~~ge~I~~~Gd-~~~~lYfI~~G~V~v~~~~--g---~i~~l~~G~~fGe 637 (746)
+....+.||...-..-- ..+++++|++|...+...+ + ....+.+||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 34456788887654432 2568999999999987632 2 3678999997754
No 82
>PHA03029 hypothetical protein; Provisional
Probab=21.64 E-value=4.4e+02 Score=22.13 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004529 466 VGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLD 503 (746)
Q Consensus 466 ~~E~i~~i~~~i~G~i~fa~iig~i~~il~~~~~~~~~ 503 (746)
..|..|-++.+++-.++.--+||.+-..+-+.++-+..
T Consensus 3 d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 3 DAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778877777777777666777777777666655443
No 83
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=21.47 E-value=5e+02 Score=25.93 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=36.7
Q ss_pred cCchhhHHHHHHHHHH-HHhhhhhcc-CCCHHHHHHHHhhcceeE--ecCCCEEEccCCccc
Q 004529 550 NLPEDLQREIRRHLFK-FVKKVRIFA-LMDEPILDAICERLRQKT--YISGSKILYRGGLIE 607 (746)
Q Consensus 550 ~Lp~~Lr~~I~~~~~~-~l~~v~lF~-~ls~~~l~~L~~~l~~~~--y~~ge~I~~~Gd~~~ 607 (746)
.+|.. ...+...+.. ++.-.-.|. ..++...++......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 34444 2333333333 444333342 356677778888888888 999999999999765
No 84
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=20.92 E-value=1.6e+02 Score=26.62 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhh-------c--CC---C-hhHHHhcCchhhHHHHHHHHHH
Q 004529 519 RLPEQLRRQVREAERYNWAAT-------R--GV---N-EDMLFTNLPEDLQREIRRHLFK 565 (746)
Q Consensus 519 ~lp~~L~~rV~~y~~y~w~~~-------~--~~---~-e~~ll~~Lp~~Lr~~I~~~~~~ 565 (746)
-||.++|.+|..-+...-... . .. . ..++|..||++||.+|..+...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~ 67 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERR 67 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHH
Confidence 489999999865444321100 0 00 0 2589999999999999887654
No 85
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=20.29 E-value=2.5e+02 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=26.7
Q ss_pred cEEEEEEeeEEEEEecCCeEEEcCCCCEEe
Q 004529 607 EKMVFIVRGKMESIGEDGIAVCLSEGDACG 636 (746)
Q Consensus 607 ~~lYfI~~G~V~v~~~~g~i~~l~~G~~fG 636 (746)
++..-|++|.+.+..++|....+++||.|=
T Consensus 64 ~E~chil~G~v~~T~d~Ge~v~~~aGD~~~ 93 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGEPVEVRAGDSFV 93 (116)
T ss_pred ceEEEEEeeEEEEECCCCeEEEEcCCCEEE
Confidence 678889999999998999999999999874
Done!