Query 004529
Match_columns 746
No_of_seqs 306 out of 2720
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 18:42:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1835-1839//hhsearch_pdb/004529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 1.0 1 1 276.9 14.9 318 196-693 3-335 (355)
2 3ukn_A Novel protein similar t 1.0 1 1 238.3 17.3 184 491-692 1-185 (212)
3 3bpz_A Potassium/sodium hyperp 1.0 1 1 228.3 23.7 184 495-704 2-186 (202)
4 2ptm_A Hyperpolarization-activ 1.0 1 1 228.1 23.7 178 495-692 1-180 (198)
5 1orq_C Potassium channel; volt 1.0 1 1 175.0 17.3 193 205-496 9-220 (223)
6 2r9r_B Paddle chimera voltage 1.0 1 1 172.3 17.6 283 195-574 172-500 (514)
7 4f8a_A Potassium voltage-gated 1.0 1 1 140.7 16.0 133 544-693 5-138 (160)
8 3shr_A CGMP-dependent protein 1.0 1 1 126.4 15.2 110 564-692 155-271 (299)
9 3ocp_A PRKG1 protein; serine/t 1.0 1 1 125.5 13.3 124 550-692 7-131 (139)
10 2a9h_A Voltage-gated potassium 1.0 1 1 123.1 9.2 66 438-503 81-146 (155)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=1.00 E-value=1 Score=276.88 Aligned_cols=318 Identities=18% Similarity=0.162 Sum_probs=229.9
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC
Q ss_conf 45888579987999999999999888476543002467612552477420568999999999999898640141761876
Q 004529 196 MNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPES 275 (746)
Q Consensus 196 i~P~S~~~~~Wd~~~~i~~l~~~~iiPl~i~F~~~~~~~~c~~~~~~~~~~~~~i~~i~diif~lDIll~F~tay~~~~s 275 (746)
+.|+|+. .+.++++++++++++.-+... +. ........+..++.++-++|.+|+++++..+. ++
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~-~~---------~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~-~~-- 66 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALTI-PD---------MSGRSRLALAALLAVIWGAYLLQLAATLLKRR-AG-- 66 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHTS-SS---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-SC--
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHCC-CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CC--
T ss_conf 8843679---999999999999999999736-13---------32568999999896777999999989012123-23--
Q ss_pred CCCCCCEEEECHHHHHHHHHHH-HHHHHHHHH-CCCCC---------HHHHHHHHHHHHHHCCCCCHHHHH---HHHHHH
Q ss_conf 5447983852498999983001-257887640-36312---------377787665443210233201343---579889
Q 004529 276 RVVGAGELVDHPKKIALNYLRG-YFFIDFFVA-LPLPQ---------YIPRLYKFLPLFAGQSSTGFIFES---AWANFF 341 (746)
Q Consensus 276 ~~~~~G~iV~d~k~Ia~~Ylk~-~F~lDlis~-iPl~~---------~ilRLlRl~rl~~~~~~~~~i~~~---~~~~~i 341 (746)
..|.+. |.++|++++ +|+.. +++|++|++|+.+........... ....+.
T Consensus 67 ----------------~~~~~~~~~i~Dl~~i~~p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~ 130 (355)
T 3beh_A 67 ----------------VVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLI 130 (355)
T ss_dssp ----------------SSCCCHHHHHHHHHHHHHHHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHH
T ss_pred ----------------CEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------4103383258799989889999983350367899999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999977576543344210036785433222247999999754568666655556767532223655
Q 004529 342 INLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKF 421 (746)
Q Consensus 342 ~~Ll~~ll~~H~~aC~wyli~~~~~~~c~~~~~~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~ 421 (746)
..++.++++.++.||++|.+.. |.
T Consensus 131 ~~~~~~~~~~~~~a~~~~~~e~------------------------------------------~~-------------- 154 (355)
T 3beh_A 131 GVTTLFGVVLFAVALAAYVIER------------------------------------------DI-------------- 154 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------------------------------------------TT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHC------------------------------------------CC--------------
T ss_conf 9999999999999999987536------------------------------------------77--------------
Q ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43213442201367746889999999987661135588756652778999999999989999999999999999999979
Q 004529 422 SYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR 501 (746)
Q Consensus 422 ~ygi~~~~~~~~~~~~~~~~Yi~SlYwa~~tltTvGygdi~~~s~~E~i~~i~~~iiG~i~fa~iig~i~~ii~~~~~~~ 501 (746)
+++.+..|..|+||+++||||+||||+.|.+..+++++++++++|.+++++.+|.+++.+.+..++
T Consensus 155 -------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~- 220 (355)
T 3beh_A 155 -------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR- 220 (355)
T ss_dssp -------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -------------CCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf -------------884322099999999864344589987889821999999999999999999999999998999988-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHH
Q ss_conf 9999999999999997899988999999999999863038995678720732347999999999-974311036999989
Q 004529 502 LDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPI 580 (746)
Q Consensus 502 ~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~~Lp~~Lr~eI~~~~~~-~l~~v~lF~~~s~~~ 580 (746)
+++. ... .++++++|++++++.
T Consensus 221 ---------------------------~~~~------------------------------~~~~~l~~~~lf~~ls~~~ 243 (355)
T 3beh_A 221 ---------------------------GDFV------------------------------RNWQLVAAVPLFQKLGPAV 243 (355)
T ss_dssp ---------------------------HHHH------------------------------HHHC---------------
T ss_pred ---------------------------HHHC------------------------------CCCHHHHCCCCCCCCCHHH
T ss_conf ---------------------------7650------------------------------1521210462211299999
Q ss_pred HHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99998450205716998797248824679999920899993487379938998772036641012355543332345789
Q 004529 581 LDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPG 660 (746)
Q Consensus 581 l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g~i~~l~~G~~fGe~~ll~~l~~~~~~~~~~~~~~pg 660 (746)
++.++..++.+.|.|||.|+++||..+++|||.+|.++++..+ ...+++|++|||.+++.+
T Consensus 244 l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~~----------------- 304 (355)
T 3beh_A 244 LVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALISG----------------- 304 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEECC--EEEECCCCEEEEHHHHCC-----------------
T ss_conf 9999985368897979999928995765999996489999888--048989999932699579-----------------
Q ss_pred CCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHH
Q ss_conf 744310299994529999961999999999959
Q 004529 661 QRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 661 ~~~~r~~tV~Alt~~el~~L~~~df~~il~~~~ 693 (746)
. ++.++++|.++|+++.+++++|.++++++|
T Consensus 305 ~--~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p 335 (355)
T 3beh_A 305 E--PRSATVSAATTVSLLSLHSADFQMLCSSSP 335 (355)
T ss_dssp ---------------------------------
T ss_pred C--CCCEEEEECCCEEEEEEEHHHHHHHHHHCH
T ss_conf 9--961699998608999985999999998798
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=1.00 E-value=1 Score=238.29 Aligned_cols=184 Identities=23% Similarity=0.432 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHH
Q ss_conf 999999999799999999999999997899988999999999999863038995678720732347999999999-9743
Q 004529 491 QNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKK 569 (746)
Q Consensus 491 ~~ii~~~~~~~~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~~Lp~~Lr~eI~~~~~~-~l~~ 569 (746)
++|+++++++..+|+++++.+++||+.+++|.+||.||++||+|.|..+++.+++++++.||++||.+|..+++. ++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH-H
T ss_conf 958888778899999999999999998299999999999999999986489899999998589999999999989998-2
Q ss_pred HHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCC
Q ss_conf 11036999989999984502057169987972488246799999208999934873799389987720366410123555
Q 004529 570 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSV 649 (746)
Q Consensus 570 v~lF~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g~i~~l~~G~~fGe~~ll~~l~~~~~ 649 (746)
+|+|.+++++++..++..++...|.||++|+++|+.++.||||.+|.|+++..+..+..+++|++|||.+++..
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~------ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKE------ 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSS------
T ss_pred CHHHHCCCHHHHHHHHHHHHEEEECCCCEEEECCCCCCEEEEEEECEEEEEECCEEEEEECCCCCCCCHHHCCC------
T ss_conf 58766099999999999722378399999997898566799997069999989958999459997182776058------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHH
Q ss_conf 4333234578974431029999452999996199999999995
Q 004529 650 NRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 650 ~~~~~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~ 692 (746)
...++.++|+|.++|+++.|++++|.+++..+
T Consensus 154 -----------~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 185 (212)
T 3ukn_A 154 -----------QVIKTNANVKALTYCDLQYISLKGLREVLRLY 185 (212)
T ss_dssp -----------SCCBBCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -----------CCCCCCEEEEECCCEEEEEEEHHHHHHHHHHC
T ss_conf -----------88885258997524799997699999999989
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=1.00 E-value=1 Score=228.27 Aligned_cols=184 Identities=23% Similarity=0.363 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHC
Q ss_conf 99999799999999999999997899988999999999999863038995678720732347999999999-97431103
Q 004529 495 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 573 (746)
Q Consensus 495 ~~~~~~~~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~~Lp~~Lr~eI~~~~~~-~l~~v~lF 573 (746)
++++++..+|+++++.+++||+.+++|.+|+.||++|++|.|. +++.+|+++++.||+.||.+|..+.+. ++.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9987789999999999999998759999999999999999985-558789999987699999999999999999659733
Q ss_pred CCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCCCCCC
Q ss_conf 69999899999845020571699879724882467999992089999348737993899877203664101235554333
Q 004529 574 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDA 653 (746)
Q Consensus 574 ~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g~i~~l~~G~~fGe~~ll~~l~~~~~~~~~ 653 (746)
.+++++++..++..++...|.||++|+++|+.++.||||.+|.|+++..+|....+++|++|||.+++.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~---------- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR---------- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHC----------
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCEEEEEECCCEEEEECCCCEECCHHHHCC----------
T ss_conf 1399999999999578057899988998898477699996369999978974899718998432898469----------
Q ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 234578974431029999452999996199999999995952059678867
Q 004529 654 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGA 704 (746)
Q Consensus 654 ~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~~~~l~~p~~~~~ 704 (746)
. ++.++++|.++|+++.|++++|.+++..+ |.+...
T Consensus 151 -------~--~~~~~v~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~ 186 (202)
T 3bpz_A 151 -------G--RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRA 186 (202)
T ss_dssp -------S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHH
T ss_pred -------C--CCCCEEEEEEEEEEEEEEHHHHHHHHHHC------HHHHHH
T ss_conf -------9--84628998558899998899999999989------799999
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=1.00 E-value=1 Score=228.10 Aligned_cols=178 Identities=24% Similarity=0.400 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHC
Q ss_conf 99999799999999999999997899988999999999999863038995678720732347999999999-97431103
Q 004529 495 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 573 (746)
Q Consensus 495 ~~~~~~~~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~~Lp~~Lr~eI~~~~~~-~l~~v~lF 573 (746)
.+++++..+|+++++.++.||+.+++|.+|+.||++|++|.|. +++.+|+++++.||+.||.+|..+.+. +++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9977789999999999999999759999999999999999971-667899999998399999999999999999648533
Q ss_pred CCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCC-EEEECCCCCEEEHHHHHHHCCCCCCCCC
Q ss_conf 699998999998450205716998797248824679999920899993487-3799389987720366410123555433
Q 004529 574 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRD 652 (746)
Q Consensus 574 ~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g-~i~~l~~G~~fGe~~ll~~l~~~~~~~~ 652 (746)
.+++++++..++..++...|.||++|+++|+.++.+|||.+|.|+++..+| .+..+++|++|||.+++.+
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~--------- 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR--------- 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS---------
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEEECEEEEEECCCEEEEEECCCCEECHHHHCCC---------
T ss_conf 04999999999996350042999889977986767999983889999659959988469989411887079---------
Q ss_pred CCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHH
Q ss_conf 3234578974431029999452999996199999999995
Q 004529 653 AKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 653 ~~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~ 692 (746)
. ++.++++|.++|+++.|++++|.+++.++
T Consensus 151 --------~--~~~~~~~a~~~~~l~~i~~~~f~~ll~~~ 180 (198)
T 2ptm_A 151 --------E--RRVASVKCETYCTLFSLSVQHFNQVLDEF 180 (198)
T ss_dssp --------S--CCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred --------C--CCCEEEEEEEEEEEEEEEHHHHHHHHHHC
T ss_conf --------9--60108999268899997699999999989
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=1.00 E-value=1 Score=175.04 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCEEE
Q ss_conf 87999999999999888476543002467612552477420568999999999999898640141761876544798385
Q 004529 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (746)
Q Consensus 205 ~Wd~~~~i~~l~~~~iiPl~i~F~~~~~~~~c~~~~~~~~~~~~~i~~i~diif~lDIll~F~tay~~~~s~~~~~G~iV 284 (746)
.||.+++++.+++++...+..... ++......+..++.+++++|.+|++++|+++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~----------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH----------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------
T ss_conf 289999999999999999997221----------37666469999999999999999999980263--------------
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCC--------------HHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHH-
Q ss_conf 249899998300125788764036312--------------3777876654432102332----013435798899999-
Q 004529 285 DHPKKIALNYLRGYFFIDFFVALPLPQ--------------YIPRLYKFLPLFAGQSSTG----FIFESAWANFFINLF- 345 (746)
Q Consensus 285 ~d~k~Ia~~Ylk~~F~lDlis~iPl~~--------------~ilRLlRl~rl~~~~~~~~----~i~~~~~~~~i~~Ll- 345 (746)
+ .++|+++ +++|+++++|++. +++|++|++|+.+..+... ..........+..++
T Consensus 65 -~----~~~y~~~-~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~ 138 (223)
T 1orq_C 65 -D----PAGYVKK-TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFG 138 (223)
T ss_dssp -C----HHHHHHH-HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred -C----HHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -3----8999997-298988998999999872122177899999999999999999999999999999999978999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999999999999775765433442100367854332222479999997545686666555567675322236554321
Q 004529 346 TFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGI 425 (746)
Q Consensus 346 ~~ll~~H~~aC~wyli~~~~~~~c~~~~~~~~~~~~c~~~l~~g~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~ygi 425 (746)
..++..|+.||++|++.. +..
T Consensus 139 ~~~~~~~~~~~~~~~~e~-------------------------------------~~~---------------------- 159 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVEY-------------------------------------PDP---------------------- 159 (223)
T ss_dssp HHHHHHHHHHHHHHHTTS-------------------------------------SST----------------------
T ss_pred HHHHHHHHHHHHHHHHHH-------------------------------------CCC----------------------
T ss_conf 999999999999999971-------------------------------------776----------------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34422013677468899999999876611355887566527789999999999899999999999999999
Q 004529 426 YEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 496 (746)
Q Consensus 426 ~~~~~~~~~~~~~~~~Yi~SlYwa~~tltTvGygdi~~~s~~E~i~~i~~~iiG~i~fa~iig~i~~ii~~ 496 (746)
++....|..|+||+++||||+||||+.|.+..+++++++.+++|..++|+.+|.+++.+++
T Consensus 160 ----------~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 160 ----------NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp ----------TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------7876751417786886873538988888987189999999999999999999999999987
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=1.00 E-value=1 Score=172.32 Aligned_cols=283 Identities=12% Similarity=0.132 Sum_probs=172.6
Q ss_pred EECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CE-------------EEECCCCCHHHHHHHHHHHHH
Q ss_conf 24588-85799879999999999998884765430024676---12-------------552477420568999999999
Q 004529 195 IMNPH-TRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNN---KC-------------IVINWPWTKAIVVVRSMTDLI 257 (746)
Q Consensus 195 ii~P~-S~~~~~Wd~~~~i~~l~~~~iiPl~i~F~~~~~~~---~c-------------~~~~~~~~~~~~~i~~i~dii 257 (746)
+-+|. |...++|+.++++++++++++..+...-....... .+ ..-.......+.+++.++.++
T Consensus 172 ~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~i 251 (514)
T 2r9r_B 172 FEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIW 251 (514)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 34888737888999999999999989763204610022211233343333445665434444310210899999999999
Q ss_pred HHHHHHHHHCEEEECCCCCCCCCCEEEECHHHHHHHHHHH-HHHHHHHHHCCCCC---------------------HHHH
Q ss_conf 9998986401417618765447983852498999983001-25788764036312---------------------3777
Q 004529 258 YFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQ---------------------YIPR 315 (746)
Q Consensus 258 f~lDIll~F~tay~~~~s~~~~~G~iV~d~k~Ia~~Ylk~-~F~lDlis~iPl~~---------------------~ilR 315 (746)
|.+|++++|.++-- .++|+++ |.++|+++++|+.. +++|
T Consensus 252 FtiE~ilR~~~~~~-------------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlR 312 (514)
T 2r9r_B 252 FSFEFLVRFFACPS-------------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFR 312 (514)
T ss_dssp HHHHHHHHHHHSSC-------------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999881886-------------------88888362379999999999999986411343202456788999999
Q ss_pred HHHHHHHHHHCCCCC---HHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 876654432102332---01343579--889999999-999999999999775765433442100367854332222479
Q 004529 316 LYKFLPLFAGQSSTG---FIFESAWA--NFFINLFTF-TLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCG 389 (746)
Q Consensus 316 LlRl~rl~~~~~~~~---~i~~~~~~--~~i~~Ll~~-ll~~H~~aC~wyli~~~~~~~c~~~~~~~~~~~~c~~~l~~g 389 (746)
++|++|+++..+... .+..+... ..+..++++ ++..+++|+++|++..
T Consensus 313 llRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~-------------------------- 366 (514)
T 2r9r_B 313 IMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA-------------------------- 366 (514)
T ss_dssp HHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC--------------------------
T ss_conf 999999999863102789999999999999999999999999998740310214--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99999754568666655556767532223655432134422013677468899999999876611355887566527789
Q 004529 390 HGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEV 469 (746)
Q Consensus 390 ~~~~~~~~~~~~~~~sW~~~~~~~~c~~~~~~~ygi~~~~~~~~~~~~~~~~Yi~SlYwa~~tltTvGygdi~~~s~~E~ 469 (746)
|. ..+.+..|..|+||+++||||+||||+.|.+..++
T Consensus 367 ----------------~~---------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr 403 (514)
T 2r9r_B 367 ----------------DE---------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403 (514)
T ss_dssp ----------------TC---------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHH
T ss_pred ----------------CC---------------------------CCCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCHH
T ss_conf ----------------67---------------------------87665520121301246777312488888984327
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999989999999999999999999979999999999999999789998899999999999986303899567872
Q 004529 470 LFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFT 549 (746)
Q Consensus 470 i~~i~~~iiG~i~fa~iig~i~~ii~~~~~~~~~~~~~l~~i~~ym~~~~lp~~Lr~rV~~Y~~y~w~~~~~~~e~~ll~ 549 (746)
+++++++++|.+++++++|.+.+.++....++.+ ++.....+.++.-...|.....+ + .......++.-..
T Consensus 404 ~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~~~s~~~ 474 (514)
T 2r9r_B 404 IVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSASTISKSDYM 474 (514)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCEEEECCCCCCHHHH--H------CCCCCCCCCCCCC
T ss_conf 6110599999999999999999999999999999-99997337899968876426677--4------1467774445422
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCC
Q ss_conf 0732347999999999-974311036
Q 004529 550 NLPEDLQREIRRHLFK-FVKKVRIFA 574 (746)
Q Consensus 550 ~Lp~~Lr~eI~~~~~~-~l~~v~lF~ 574 (746)
+|.+.++.++...... .....+...
T Consensus 475 el~e~~~~~~~~~~~~~~~~~~~~~~ 500 (514)
T 2r9r_B 475 EIQEGVNNSNEDFREENLKTANSTLA 500 (514)
T ss_dssp --------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21222210000134322556775434
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=1.00 E-value=1 Score=140.67 Aligned_cols=133 Identities=21% Similarity=0.387 Sum_probs=122.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEC
Q ss_conf 5678720732347999999999-974311036999989999984502057169987972488246799999208999934
Q 004529 544 EDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE 622 (746)
Q Consensus 544 e~~ll~~Lp~~Lr~eI~~~~~~-~l~~v~lF~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~ 622 (746)
.+++++.||++||.++..+++. +++++++|.+++++.+..++..++.+.|.+|+.|+++|+..+.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEEC
T ss_conf 58999978998999999998799997087653199999999998503666389999993899765799999458999979
Q ss_pred CCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHH
Q ss_conf 87379938998772036641012355543332345789744310299994529999961999999999959
Q 004529 623 DGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 693 (746)
Q Consensus 623 ~g~i~~l~~G~~fGe~~ll~~l~~~~~~~~~~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~~ 693 (746)
+..+..+++|++||+.+++.. ...++.++++|.++|+++.+++++|.+++.++|
T Consensus 85 ~~~~~~~~~G~~fG~~~~~~~-----------------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 85 DEVVAILGKGDVFGDVFWKEA-----------------TLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp TEEEEEEETTCEEECCTTTCS-----------------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred CEEEEEECCCCEECCHHHHCC-----------------CCCCEEEEEEECCCEEEEEECHHHHHHHHHHHH
T ss_conf 978998359987576777357-----------------665557899987856999983999999999789
No 8
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=1.00 E-value=1 Score=126.39 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=99.9
Q ss_pred HH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECC---C---EEEECCCCCEEE
Q ss_conf 99-9743110369999899999845020571699879724882467999992089999348---7---379938998772
Q 004529 564 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGED---G---IAVCLSEGDACG 636 (746)
Q Consensus 564 ~~-~l~~v~lF~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~---g---~i~~l~~G~~fG 636 (746)
.. ++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ | .+..+++|++||
T Consensus 155 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fG 234 (299)
T 3shr_A 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG 234 (299)
T ss_dssp HHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEEC
T ss_pred HHHHHHHCHHHHHCCHHHHHHHHHHCCEEEECCCCEEEECCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEC
T ss_conf 99998618776509999999999736488989999999089978879999945899999358898626989858988828
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHH
Q ss_conf 03664101235554333234578974431029999452999996199999999995
Q 004529 637 EELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 637 e~~ll~~l~~~~~~~~~~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~ 692 (746)
|.+++.. . ++.++|+|.++|+++.|++++|.+++..+
T Consensus 235 e~~ll~~-----------------~--~~~~tv~a~~~~~l~~i~~~~f~~ll~~~ 271 (299)
T 3shr_A 235 EKALQGE-----------------D--VRTANVIAAEAVTCLVIDRDSFKHLIGGL 271 (299)
T ss_dssp GGGGSSS-----------------E--ECSSEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred HHHHHCC-----------------C--CCCEEEEECCCEEEEEEEHHHHHHHHCCH
T ss_conf 6898379-----------------9--84218999898799998589999997348
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=1.00 E-value=1 Score=125.54 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEE
Q ss_conf 0732347999999999-974311036999989999984502057169987972488246799999208999934873799
Q 004529 550 NLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVC 628 (746)
Q Consensus 550 ~Lp~~Lr~eI~~~~~~-~l~~v~lF~~~s~~~l~~L~~~lk~~~y~~ge~Ii~~Ge~~~~lYfI~~G~v~i~~~~g~i~~ 628 (746)
.+|..+|.+...+... +++++++|..++++.++.++..++.+.|.+|++|+++|+..+.+|||.+|.|++..++..+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHCEEEECCCCCEEEECCCCCCEEEEEEECEEEEEECCEEEEE
T ss_conf 57898899899999999986388663299999999998607784189999995898477799999478999989989999
Q ss_pred CCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHH
Q ss_conf 3899877203664101235554333234578974431029999452999996199999999995
Q 004529 629 LSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 692 (746)
Q Consensus 629 l~~G~~fGe~~ll~~l~~~~~~~~~~~~~~pg~~~~r~~tV~Alt~~el~~L~~~df~~il~~~ 692 (746)
+.+|++||+.+++.. . ++.++++|.++|+++.|++++|.+++.++
T Consensus 87 ~~~G~~fGe~~~l~~-----------------~--~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 131 (139)
T 3ocp_A 87 MGPGKVFGELAILYN-----------------C--TRTATVKTLVNVKLWAIDRQCFQTIMMRT 131 (139)
T ss_dssp ECTTCEESCHHHHHC-----------------C--CCSSEEEESSCEEEEEEEHHHHHHHHTC-
T ss_pred ECCCCEECCHHHHCC-----------------C--CCCEEEEECCCEEEEEECHHHHHHHHHHC
T ss_conf 579987042899779-----------------9--85408998764699998399999998559
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=1.00 E-value=1 Score=123.06 Aligned_cols=66 Identities=9% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688999999998766113558875665277899999999998999999999999999999997999
Q 004529 438 IITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLD 503 (746)
Q Consensus 438 ~~~~Yi~SlYwa~~tltTvGygdi~~~s~~E~i~~i~~~iiG~i~fa~iig~i~~ii~~~~~~~~~ 503 (746)
.+..|..|+||+++|+|||||||+.|.+..+++++++.+++|..++|+++|.+++.+.+...++.+
T Consensus 81 ~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 81 ALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp STTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CCCCCCCEEHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 667664000102001433068888889862899999999999999999999999999999999988
Done!