Query 004530
Match_columns 746
No_of_seqs 378 out of 1608
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 00:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0246 Kinesin-like protein [ 100.0 5.3E-96 1E-100 802.1 29.6 506 1-543 4-546 (676)
2 KOG4280 Kinesin-like protein [ 100.0 6E-80 1.3E-84 692.9 23.8 333 202-549 3-347 (574)
3 KOG0245 Kinesin-like protein [ 100.0 1.7E-79 3.7E-84 702.5 19.8 354 203-593 3-381 (1221)
4 cd01370 KISc_KIP3_like Kinesin 100.0 4.5E-77 9.9E-82 645.6 34.6 323 205-538 1-338 (338)
5 KOG0243 Kinesin-like protein [ 100.0 2.7E-78 5.9E-83 704.3 26.2 356 199-586 44-424 (1041)
6 cd01367 KISc_KIF2_like Kinesin 100.0 2.4E-76 5.2E-81 636.0 34.1 315 204-536 1-322 (322)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.7E-75 3.6E-80 633.2 34.1 314 204-538 1-337 (337)
8 PLN03188 kinesin-12 family pro 100.0 3.7E-75 8E-80 683.5 37.9 347 203-589 97-469 (1320)
9 cd01368 KISc_KIF23_like Kinesi 100.0 4E-75 8.8E-80 632.1 34.8 320 205-536 2-345 (345)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.6E-74 5.6E-79 627.9 36.3 330 204-544 1-355 (356)
11 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-74 2.8E-79 636.0 21.9 321 202-545 5-338 (607)
12 KOG0242 Kinesin-like protein [ 100.0 5.8E-74 1.2E-78 664.3 24.3 330 203-551 5-344 (675)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 3E-72 6.4E-77 606.7 35.2 319 204-538 1-333 (333)
14 cd01374 KISc_CENP_E Kinesin mo 100.0 3.9E-72 8.4E-77 602.6 34.1 311 205-538 1-321 (321)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.4E-72 1.4E-76 608.0 35.9 325 204-546 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 8.8E-72 1.9E-76 600.6 34.8 312 204-538 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 1.4E-71 3E-76 598.2 34.6 306 205-536 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 3.5E-71 7.5E-76 599.3 34.1 319 205-539 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 6E-71 1.3E-75 596.9 34.4 315 205-536 1-334 (334)
20 KOG0241 Kinesin-like protein [ 100.0 8.2E-72 1.8E-76 628.4 21.4 345 203-556 3-369 (1714)
21 cd01366 KISc_C_terminal Kinesi 100.0 7.8E-70 1.7E-74 586.1 35.7 316 203-541 1-329 (329)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 9.9E-71 2.1E-75 635.6 21.8 335 193-546 303-648 (670)
23 cd00106 KISc Kinesin motor dom 100.0 5.3E-68 1.2E-72 570.4 35.7 316 205-536 1-328 (328)
24 smart00129 KISc Kinesin motor, 100.0 4.7E-67 1E-71 565.2 36.0 322 205-544 1-334 (335)
25 PF00225 Kinesin: Kinesin moto 100.0 2.3E-68 5E-73 574.7 24.6 318 211-538 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 5.4E-61 1.2E-65 539.1 24.2 331 200-543 27-441 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.6E-60 3.4E-65 548.6 4.8 309 212-547 1-326 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.5E-56 3.3E-61 513.5 25.0 317 199-545 17-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.3E-46 1.4E-50 370.6 18.3 173 270-517 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.8 1.7E-07 3.7E-12 109.2 -11.7 209 251-482 351-566 (568)
31 PF07647 SAM_2: SAM domain (St 96.2 0.0028 6E-08 52.9 2.2 54 39-92 8-65 (66)
32 cd00166 SAM Sterile alpha moti 94.3 0.023 5.1E-07 46.1 1.8 54 39-92 6-62 (63)
33 COG0556 UvrB Helicase subunit 93.7 0.069 1.5E-06 61.7 4.4 84 254-343 4-100 (663)
34 smart00454 SAM Sterile alpha m 93.1 0.053 1.2E-06 44.4 1.8 56 38-93 7-66 (68)
35 PF00536 SAM_1: SAM domain (St 92.1 0.11 2.4E-06 43.0 2.5 55 38-92 6-63 (64)
36 PF00308 Bac_DnaA: Bacterial d 91.0 0.057 1.2E-06 56.0 -0.4 50 254-306 4-53 (219)
37 PRK06893 DNA replication initi 88.6 0.21 4.5E-06 52.0 1.5 50 253-308 11-60 (229)
38 COG2805 PilT Tfp pilus assembl 88.5 0.21 4.6E-06 54.5 1.5 31 275-305 113-143 (353)
39 PRK06526 transposase; Provisio 86.6 0.31 6.7E-06 51.9 1.3 44 261-309 77-120 (254)
40 PRK12377 putative replication 86.4 0.36 7.8E-06 51.3 1.7 52 255-308 71-122 (248)
41 PRK08116 hypothetical protein; 85.1 0.4 8.6E-06 51.4 1.3 52 253-306 80-133 (268)
42 PRK14086 dnaA chromosomal repl 84.4 0.34 7.4E-06 57.6 0.4 53 253-308 283-335 (617)
43 PRK06620 hypothetical protein; 82.3 0.5 1.1E-05 48.9 0.6 50 252-305 10-62 (214)
44 PRK07952 DNA replication prote 81.9 0.65 1.4E-05 49.3 1.3 52 254-307 68-119 (244)
45 PRK08084 DNA replication initi 81.7 0.77 1.7E-05 48.0 1.8 48 253-306 17-64 (235)
46 PRK14088 dnaA chromosomal repl 81.6 0.59 1.3E-05 53.5 0.9 50 253-306 100-149 (440)
47 COG2804 PulE Type II secretory 81.1 0.69 1.5E-05 53.6 1.2 31 276-306 247-277 (500)
48 COG1474 CDC6 Cdc6-related prot 80.7 2 4.3E-05 48.3 4.6 25 280-304 34-59 (366)
49 cd00009 AAA The AAA+ (ATPases 80.6 0.93 2E-05 41.1 1.7 27 278-304 10-36 (151)
50 TIGR02928 orc1/cdc6 family rep 80.5 1 2.2E-05 49.4 2.2 46 258-304 11-57 (365)
51 TIGR00362 DnaA chromosomal rep 80.5 0.69 1.5E-05 52.0 1.0 51 253-306 105-155 (405)
52 PF04851 ResIII: Type III rest 80.4 0.8 1.7E-05 44.1 1.2 36 267-306 8-44 (184)
53 PRK05642 DNA replication initi 80.0 1 2.3E-05 47.0 2.0 47 253-306 14-64 (234)
54 PRK00149 dnaA chromosomal repl 79.7 0.72 1.6E-05 52.8 0.8 51 253-306 117-167 (450)
55 PRK08181 transposase; Validate 79.6 0.99 2.1E-05 48.6 1.7 24 284-309 105-128 (269)
56 PRK09087 hypothetical protein; 79.5 0.9 1.9E-05 47.4 1.4 47 253-305 16-62 (226)
57 PRK06835 DNA replication prote 77.9 1.1 2.5E-05 49.5 1.6 39 268-308 166-204 (329)
58 PRK00411 cdc6 cell division co 77.6 1.5 3.2E-05 48.7 2.5 26 279-304 46-72 (394)
59 PRK08939 primosomal protein Dn 77.3 1 2.2E-05 49.3 1.0 52 256-308 125-177 (306)
60 TIGR00631 uvrb excinuclease AB 76.5 1.9 4.1E-05 52.0 3.1 83 255-343 2-97 (655)
61 PRK14087 dnaA chromosomal repl 76.3 1.3 2.9E-05 50.9 1.6 49 254-305 111-159 (450)
62 PRK08903 DnaA regulatory inact 75.7 1.7 3.7E-05 44.6 2.1 49 252-305 12-60 (227)
63 PRK08727 hypothetical protein; 74.9 1.1 2.5E-05 46.7 0.6 20 288-307 42-61 (233)
64 TIGR03420 DnaA_homol_Hda DnaA 74.7 1.6 3.4E-05 44.4 1.5 47 253-305 10-56 (226)
65 cd00046 DEXDc DEAD-like helica 74.7 1.1 2.4E-05 40.1 0.4 17 290-306 3-19 (144)
66 smart00053 DYNc Dynamin, GTPas 72.3 8.5 0.00018 40.9 6.3 53 372-449 85-137 (240)
67 TIGR02538 type_IV_pilB type IV 71.7 1.7 3.6E-05 51.6 1.0 29 278-306 307-335 (564)
68 PF13245 AAA_19: Part of AAA d 71.5 1.9 4E-05 37.6 1.0 26 279-305 3-28 (76)
69 PF01935 DUF87: Domain of unkn 71.3 1.4 3E-05 45.3 0.2 49 468-517 164-212 (229)
70 PRK10436 hypothetical protein; 71.3 1.8 4E-05 50.0 1.2 27 279-305 210-236 (462)
71 COG1484 DnaC DNA replication p 71.0 1.9 4.1E-05 45.9 1.2 53 254-309 75-127 (254)
72 TIGR02533 type_II_gspE general 71.0 1.9 4.2E-05 50.2 1.3 28 278-305 233-260 (486)
73 COG1222 RPT1 ATP-dependent 26S 70.5 6.2 0.00014 44.4 5.0 117 205-322 94-243 (406)
74 COG0593 DnaA ATPase involved i 70.5 1.9 4E-05 49.2 1.0 51 252-305 81-131 (408)
75 PF05673 DUF815: Protein of un 69.0 2.4 5.3E-05 45.2 1.4 127 256-407 25-154 (249)
76 PF00270 DEAD: DEAD/DEAH box h 68.9 2 4.3E-05 41.1 0.7 24 279-304 8-31 (169)
77 PF12846 AAA_10: AAA-like doma 68.8 1.5 3.1E-05 45.9 -0.3 19 287-305 1-19 (304)
78 PF13604 AAA_30: AAA domain; P 68.8 2.2 4.7E-05 43.4 1.0 27 278-304 9-35 (196)
79 PF01695 IstB_IS21: IstB-like 68.6 1.6 3.4E-05 44.0 -0.1 21 287-307 47-67 (178)
80 PRK06921 hypothetical protein; 68.3 2.6 5.7E-05 45.2 1.5 38 269-307 97-137 (266)
81 PF13401 AAA_22: AAA domain; P 68.1 1.5 3.2E-05 40.4 -0.4 18 287-304 4-21 (131)
82 TIGR01420 pilT_fam pilus retra 67.8 2.4 5.1E-05 47.0 1.1 27 279-305 114-140 (343)
83 smart00382 AAA ATPases associa 67.6 1.9 4E-05 38.5 0.2 18 288-305 3-20 (148)
84 PF01637 Arch_ATPase: Archaeal 67.4 2.1 4.6E-05 42.7 0.6 30 275-304 8-37 (234)
85 TIGR02525 plasmid_TraJ plasmid 66.6 2.7 5.9E-05 47.4 1.3 20 286-305 148-167 (372)
86 PF00437 T2SE: Type II/IV secr 66.6 2 4.2E-05 45.4 0.1 18 287-304 127-144 (270)
87 PRK09183 transposase/IS protei 65.4 3.1 6.7E-05 44.4 1.3 22 284-307 101-122 (259)
88 cd01131 PilT Pilus retraction 65.3 2.2 4.8E-05 43.4 0.2 18 288-305 2-19 (198)
89 COG5008 PilU Tfp pilus assembl 65.3 3.8 8.1E-05 44.5 1.9 31 275-305 115-145 (375)
90 cd01129 PulE-GspE PulE/GspE Th 64.9 3.1 6.7E-05 44.5 1.2 27 279-305 72-98 (264)
91 TIGR02524 dot_icm_DotB Dot/Icm 64.7 3 6.5E-05 46.7 1.2 21 285-305 132-152 (358)
92 PRK12422 chromosomal replicati 63.9 4.1 8.8E-05 47.0 2.0 52 252-306 105-160 (445)
93 PRK13894 conjugal transfer ATP 62.8 2.9 6.4E-05 46.1 0.6 28 277-305 139-166 (319)
94 KOG0727 26S proteasome regulat 62.7 9 0.00019 41.3 4.1 114 207-321 100-246 (408)
95 PF05970 PIF1: PIF1-like helic 62.5 4.1 8.9E-05 45.5 1.7 36 265-304 4-39 (364)
96 PTZ00454 26S protease regulato 62.4 4.4 9.6E-05 46.0 1.9 52 253-304 140-196 (398)
97 KOG2543 Origin recognition com 62.2 3.3 7.2E-05 46.7 0.9 36 290-340 33-68 (438)
98 TIGR02782 TrbB_P P-type conjug 62.1 2.9 6.4E-05 45.6 0.5 28 277-305 123-150 (299)
99 cd01378 MYSc_type_I Myosin mot 61.3 25 0.00054 42.8 8.1 21 284-304 83-103 (674)
100 TIGR03015 pepcterm_ATPase puta 60.6 5 0.00011 41.9 1.9 23 282-304 38-60 (269)
101 TIGR01242 26Sp45 26S proteasom 60.1 7.2 0.00016 43.3 3.1 17 288-304 157-173 (364)
102 PTZ00112 origin recognition co 60.0 6 0.00013 49.3 2.6 20 285-304 779-798 (1164)
103 smart00487 DEXDc DEAD-like hel 59.3 5.1 0.00011 38.2 1.5 18 288-305 25-42 (201)
104 cd00124 MYSc Myosin motor doma 58.2 32 0.0007 41.8 8.4 34 270-304 69-103 (679)
105 PF13191 AAA_16: AAA ATPase do 57.9 3.1 6.8E-05 40.4 -0.2 27 278-304 15-41 (185)
106 PLN00020 ribulose bisphosphate 57.8 11 0.00024 42.8 4.0 53 252-304 109-165 (413)
107 cd01382 MYSc_type_VI Myosin mo 57.5 35 0.00075 41.9 8.4 21 284-304 88-108 (717)
108 smart00242 MYSc Myosin. Large 57.3 31 0.00066 42.1 7.9 21 284-304 89-109 (677)
109 PF13479 AAA_24: AAA domain 56.9 4 8.6E-05 42.0 0.4 19 287-305 3-21 (213)
110 PRK12402 replication factor C 56.5 6.2 0.00013 42.6 1.8 42 256-305 13-54 (337)
111 PF00004 AAA: ATPase family as 56.0 3.5 7.6E-05 37.6 -0.2 15 290-304 1-15 (132)
112 cd01384 MYSc_type_XI Myosin mo 55.8 36 0.00077 41.5 8.1 21 284-304 85-105 (674)
113 PF00448 SRP54: SRP54-type pro 55.5 3.5 7.6E-05 42.2 -0.3 17 289-305 3-19 (196)
114 PF00910 RNA_helicase: RNA hel 55.1 3.6 7.7E-05 37.7 -0.3 26 290-319 1-26 (107)
115 cd01377 MYSc_type_II Myosin mo 54.7 39 0.00084 41.3 8.2 34 270-304 74-108 (693)
116 PF13086 AAA_11: AAA domain; P 54.5 4.8 0.0001 40.2 0.4 18 289-306 19-36 (236)
117 PRK13833 conjugal transfer pro 54.1 5.6 0.00012 44.0 1.0 28 277-305 135-162 (323)
118 KOG0989 Replication factor C, 54.0 8.7 0.00019 42.4 2.3 27 278-304 47-74 (346)
119 TIGR00635 ruvB Holliday juncti 53.8 6.7 0.00015 42.0 1.5 44 261-305 3-48 (305)
120 PF13207 AAA_17: AAA domain; P 53.2 4.3 9.4E-05 36.9 -0.1 16 289-304 1-16 (121)
121 PF02562 PhoH: PhoH-like prote 52.8 7.2 0.00016 40.5 1.5 19 286-304 18-36 (205)
122 cd01130 VirB11-like_ATPase Typ 52.2 6.4 0.00014 39.5 0.9 29 275-304 14-42 (186)
123 PTZ00361 26 proteosome regulat 52.2 9.7 0.00021 43.9 2.5 16 289-304 219-234 (438)
124 PF00580 UvrD-helicase: UvrD/R 52.0 5.4 0.00012 41.9 0.4 20 285-304 11-30 (315)
125 PF01580 FtsK_SpoIIIE: FtsK/Sp 51.9 3.2 6.9E-05 41.9 -1.3 17 289-305 40-56 (205)
126 PRK13900 type IV secretion sys 51.6 7.9 0.00017 43.0 1.6 29 276-305 150-178 (332)
127 PHA02544 44 clamp loader, smal 50.7 7.2 0.00016 42.0 1.1 22 284-305 39-61 (316)
128 PRK11448 hsdR type I restricti 50.5 6.9 0.00015 50.1 1.1 30 277-307 424-453 (1123)
129 PRK11776 ATP-dependent RNA hel 50.5 7.8 0.00017 44.3 1.4 23 279-303 35-57 (460)
130 cd01380 MYSc_type_V Myosin mot 50.2 51 0.0011 40.3 8.3 21 284-304 83-103 (691)
131 PTZ00424 helicase 45; Provisio 49.1 7.6 0.00016 43.1 1.0 24 279-304 59-82 (401)
132 cd00268 DEADc DEAD-box helicas 48.9 9.2 0.0002 38.0 1.5 23 280-304 31-53 (203)
133 COG4962 CpaF Flp pilus assembl 48.2 7.7 0.00017 43.4 0.9 26 278-304 165-190 (355)
134 PF06309 Torsin: Torsin; Inte 47.7 6.8 0.00015 37.8 0.3 27 288-318 53-80 (127)
135 TIGR03499 FlhF flagellar biosy 47.4 6 0.00013 42.7 -0.1 20 289-308 196-215 (282)
136 TIGR01817 nifA Nif-specific re 46.4 9.4 0.0002 44.7 1.3 116 254-387 192-318 (534)
137 PRK11192 ATP-dependent RNA hel 45.9 9.8 0.00021 43.1 1.3 24 279-304 32-55 (434)
138 PRK13851 type IV secretion sys 45.6 7.4 0.00016 43.5 0.2 29 276-305 152-180 (344)
139 PRK13342 recombination factor 45.2 9.6 0.00021 43.2 1.1 40 265-305 15-54 (413)
140 PF13671 AAA_33: AAA domain; P 44.8 7.4 0.00016 36.3 0.1 15 290-304 2-16 (143)
141 PRK03992 proteasome-activating 44.8 6.7 0.00015 44.3 -0.3 51 254-304 127-182 (389)
142 PRK04837 ATP-dependent RNA hel 44.7 10 0.00022 42.9 1.2 24 279-304 39-62 (423)
143 PF07728 AAA_5: AAA domain (dy 44.7 6.6 0.00014 36.9 -0.3 15 290-304 2-16 (139)
144 TIGR00348 hsdR type I site-spe 44.4 13 0.00027 45.2 1.9 32 274-306 246-282 (667)
145 PF05496 RuvB_N: Holliday junc 44.4 18 0.0004 38.4 2.9 43 260-303 22-66 (233)
146 PRK10590 ATP-dependent RNA hel 44.3 12 0.00025 43.1 1.5 24 279-304 32-55 (456)
147 PHA00729 NTP-binding motif con 43.9 12 0.00026 39.5 1.4 32 276-307 6-37 (226)
148 COG1223 Predicted ATPase (AAA+ 43.5 11 0.00024 40.9 1.1 18 287-304 151-168 (368)
149 CHL00081 chlI Mg-protoporyphyr 42.8 10 0.00022 42.6 0.8 44 253-304 12-55 (350)
150 PRK13764 ATPase; Provisional 42.4 11 0.00023 45.3 0.9 20 287-306 257-276 (602)
151 KOG2228 Origin recognition com 42.2 53 0.0012 37.1 6.1 119 262-391 28-195 (408)
152 PRK06547 hypothetical protein; 42.1 13 0.00029 37.2 1.4 29 276-304 4-32 (172)
153 PF00063 Myosin_head: Myosin h 42.1 11 0.00025 45.6 1.1 34 270-304 68-102 (689)
154 KOG0340 ATP-dependent RNA heli 42.1 23 0.00049 40.0 3.2 26 277-304 36-61 (442)
155 PF06414 Zeta_toxin: Zeta toxi 41.7 9.5 0.00021 38.6 0.3 20 285-304 13-32 (199)
156 PRK12723 flagellar biosynthesi 41.5 8.8 0.00019 43.6 0.0 19 287-305 174-192 (388)
157 PRK11331 5-methylcytosine-spec 41.3 12 0.00027 43.3 1.2 36 503-542 320-357 (459)
158 PF06048 DUF927: Domain of unk 40.5 16 0.00034 39.5 1.8 32 272-304 179-210 (286)
159 PF13238 AAA_18: AAA domain; P 40.5 9.5 0.00021 34.5 0.1 16 290-305 1-16 (129)
160 PF07724 AAA_2: AAA domain (Cd 40.1 9.3 0.0002 38.3 -0.1 17 288-304 4-20 (171)
161 TIGR02903 spore_lon_C ATP-depe 40.0 13 0.00029 44.6 1.2 42 255-304 151-192 (615)
162 COG1419 FlhF Flagellar GTP-bin 39.6 18 0.00039 41.3 2.1 39 267-305 179-221 (407)
163 PF03215 Rad17: Rad17 cell cyc 39.6 15 0.00032 43.4 1.4 30 275-304 31-62 (519)
164 KOG4384 Uncharacterized SAM do 39.3 16 0.00035 40.8 1.6 59 36-94 214-276 (361)
165 TIGR02881 spore_V_K stage V sp 39.2 11 0.00024 39.9 0.3 17 288-304 43-59 (261)
166 PRK00080 ruvB Holliday junctio 38.8 16 0.00034 40.0 1.4 41 264-305 27-69 (328)
167 PRK00440 rfc replication facto 38.2 18 0.00038 38.7 1.7 21 284-304 35-55 (319)
168 TIGR00618 sbcc exonuclease Sbc 37.9 18 0.00038 46.1 1.8 17 288-304 27-43 (1042)
169 TIGR00614 recQ_fam ATP-depende 37.5 18 0.00039 41.7 1.7 25 278-304 19-43 (470)
170 PLN03025 replication factor C 37.1 19 0.00041 39.2 1.8 22 285-306 32-53 (319)
171 PRK14722 flhF flagellar biosyn 37.0 13 0.00028 42.1 0.4 21 287-307 137-157 (374)
172 PRK11634 ATP-dependent RNA hel 36.9 16 0.00034 44.1 1.1 25 278-304 36-60 (629)
173 COG1201 Lhr Lhr-like helicases 36.9 19 0.00041 44.6 1.9 41 495-541 335-381 (814)
174 PRK10536 hypothetical protein; 35.7 19 0.00041 38.9 1.4 41 254-304 51-91 (262)
175 PRK01297 ATP-dependent RNA hel 35.2 16 0.00036 41.9 1.0 25 278-304 117-141 (475)
176 PRK04537 ATP-dependent RNA hel 35.1 18 0.0004 43.0 1.3 24 279-304 40-63 (572)
177 PF10236 DAP3: Mitochondrial r 35.0 18 0.0004 39.6 1.2 23 283-305 19-41 (309)
178 PF05729 NACHT: NACHT domain 34.8 15 0.00032 34.7 0.4 17 289-305 2-18 (166)
179 PF07693 KAP_NTPase: KAP famil 34.8 19 0.00042 38.6 1.4 20 285-304 18-37 (325)
180 cd01127 TrwB Bacterial conjuga 34.8 12 0.00026 42.5 -0.3 20 287-306 42-61 (410)
181 TIGR00376 DNA helicase, putati 34.0 16 0.00035 44.1 0.6 17 289-305 175-191 (637)
182 cd01120 RecA-like_NTPases RecA 34.0 14 0.00031 34.4 0.2 16 290-305 2-17 (165)
183 PRK13341 recombination factor 33.8 20 0.00044 44.0 1.4 22 284-305 49-70 (725)
184 KOG1803 DNA helicase [Replicat 33.7 22 0.00047 42.5 1.6 18 288-305 202-219 (649)
185 PRK15429 formate hydrogenlyase 33.6 20 0.00043 43.5 1.4 116 255-388 373-499 (686)
186 PRK10416 signal recognition pa 33.5 24 0.00052 39.0 1.8 18 288-305 115-132 (318)
187 TIGR02788 VirB11 P-type DNA tr 33.5 22 0.00047 38.9 1.5 29 275-304 133-161 (308)
188 TIGR02640 gas_vesic_GvpN gas v 33.4 24 0.00052 37.5 1.7 27 276-304 12-38 (262)
189 TIGR01618 phage_P_loop phage n 33.3 15 0.00032 38.6 0.1 21 287-307 12-32 (220)
190 TIGR02996 rpt_mate_G_obs repea 32.9 53 0.0011 26.0 3.1 27 13-49 5-31 (42)
191 PF12775 AAA_7: P-loop contain 32.8 18 0.00038 39.0 0.6 26 278-304 25-50 (272)
192 PF03668 ATP_bind_2: P-loop AT 32.4 39 0.00084 37.0 3.1 33 289-321 3-46 (284)
193 PF02456 Adeno_IVa2: Adenoviru 32.4 15 0.00032 40.8 -0.0 15 290-304 90-104 (369)
194 KOG3859 Septins (P-loop GTPase 32.3 20 0.00043 39.3 0.9 24 281-304 36-59 (406)
195 COG1219 ClpX ATP-dependent pro 32.3 19 0.0004 40.3 0.7 20 285-304 95-114 (408)
196 KOG0729 26S proteasome regulat 32.1 42 0.00092 36.7 3.3 34 288-321 212-268 (435)
197 PHA02653 RNA helicase NPH-II; 32.0 27 0.00058 42.6 2.0 24 278-303 172-195 (675)
198 PRK04195 replication factor C 31.7 21 0.00046 41.3 1.1 30 275-304 26-56 (482)
199 PHA02244 ATPase-like protein 31.6 31 0.00067 39.2 2.3 19 284-304 118-136 (383)
200 KOG1514 Origin recognition com 31.4 55 0.0012 40.0 4.3 53 486-544 572-633 (767)
201 cd01383 MYSc_type_VIII Myosin 31.3 36 0.00079 41.5 3.0 34 270-304 75-109 (677)
202 TIGR03819 heli_sec_ATPase heli 31.2 22 0.00048 39.6 1.1 29 275-304 167-195 (340)
203 TIGR02237 recomb_radB DNA repa 31.1 22 0.00048 35.8 1.0 25 280-304 2-29 (209)
204 PRK00771 signal recognition pa 31.0 36 0.00078 39.4 2.8 19 287-305 95-113 (437)
205 PLN00206 DEAD-box ATP-dependen 31.0 30 0.00065 40.5 2.2 24 279-304 152-175 (518)
206 PF13173 AAA_14: AAA domain 30.7 17 0.00038 33.9 0.2 16 289-304 4-19 (128)
207 PF03193 DUF258: Protein of un 30.7 14 0.00031 37.0 -0.4 64 279-345 29-93 (161)
208 PRK05580 primosome assembly pr 30.6 24 0.00052 42.9 1.3 37 261-304 143-179 (679)
209 KOG0926 DEAH-box RNA helicase 30.5 25 0.00055 43.3 1.5 19 286-304 270-288 (1172)
210 KOG2373 Predicted mitochondria 30.4 32 0.00069 38.9 2.1 27 277-304 261-290 (514)
211 PRK05022 anaerobic nitric oxid 30.4 21 0.00045 41.8 0.7 114 256-387 185-309 (509)
212 PRK11057 ATP-dependent DNA hel 30.1 24 0.00052 42.2 1.2 24 279-304 34-57 (607)
213 PRK14974 cell division protein 29.9 40 0.00087 37.6 2.8 19 287-305 140-158 (336)
214 cd01381 MYSc_type_VII Myosin m 29.8 39 0.00084 41.2 2.9 34 270-304 69-103 (671)
215 COG2256 MGS1 ATPase related to 29.7 26 0.00057 40.1 1.4 39 265-304 27-65 (436)
216 PRK04328 hypothetical protein; 29.7 29 0.00062 36.7 1.6 28 275-302 8-38 (249)
217 cd01385 MYSc_type_IX Myosin mo 29.6 38 0.00082 41.4 2.8 21 284-304 91-111 (692)
218 cd02021 GntK Gluconate kinase 29.1 19 0.00042 34.1 0.2 15 290-304 2-16 (150)
219 PRK05703 flhF flagellar biosyn 28.9 19 0.00042 41.2 0.2 18 289-306 223-240 (424)
220 cd01387 MYSc_type_XV Myosin mo 28.8 39 0.00084 41.2 2.7 34 270-304 70-104 (677)
221 PF00735 Septin: Septin; Inte 28.6 16 0.00034 39.7 -0.6 21 284-304 1-21 (281)
222 PF10412 TrwB_AAD_bind: Type I 28.5 14 0.00029 41.8 -1.2 18 288-305 16-33 (386)
223 PRK00131 aroK shikimate kinase 28.2 23 0.0005 34.0 0.5 17 288-304 5-21 (175)
224 cd01123 Rad51_DMC1_radA Rad51_ 28.0 30 0.00066 35.4 1.4 30 275-304 4-36 (235)
225 TIGR01389 recQ ATP-dependent D 27.8 31 0.00068 40.9 1.6 25 278-304 21-45 (591)
226 KOG0735 AAA+-type ATPase [Post 27.8 35 0.00075 41.8 1.9 35 287-321 701-758 (952)
227 KOG0651 26S proteasome regulat 27.7 25 0.00053 39.2 0.7 114 207-321 78-223 (388)
228 TIGR02639 ClpA ATP-dependent C 27.7 26 0.00057 42.9 1.0 35 277-311 193-227 (731)
229 PRK09270 nucleoside triphospha 27.5 39 0.00084 35.0 2.1 36 269-304 14-50 (229)
230 cd01126 TraG_VirD4 The TraG/Tr 27.5 28 0.00061 38.9 1.1 15 290-304 2-16 (384)
231 PF13555 AAA_29: P-loop contai 27.4 20 0.00044 30.4 -0.0 15 290-304 26-40 (62)
232 PRK06067 flagellar accessory p 27.2 34 0.00074 35.3 1.6 30 275-304 10-42 (234)
233 KOG0335 ATP-dependent RNA heli 27.2 27 0.00058 40.8 0.9 23 280-304 106-128 (482)
234 COG4096 HsdR Type I site-speci 27.1 35 0.00075 42.2 1.8 34 274-308 173-206 (875)
235 PF12774 AAA_6: Hydrolytic ATP 26.8 56 0.0012 34.5 3.1 35 287-321 32-83 (231)
236 TIGR01241 FtsH_fam ATP-depende 26.7 22 0.00048 41.3 0.2 18 288-305 89-106 (495)
237 PRK06995 flhF flagellar biosyn 26.6 22 0.00049 41.6 0.1 18 288-305 257-274 (484)
238 PRK11889 flhF flagellar biosyn 26.5 41 0.00089 38.8 2.2 18 288-305 242-259 (436)
239 TIGR01359 UMP_CMP_kin_fam UMP- 26.5 25 0.00055 34.5 0.5 15 290-304 2-16 (183)
240 PRK11608 pspF phage shock prot 26.4 28 0.0006 38.4 0.8 20 285-304 27-46 (326)
241 TIGR02746 TraC-F-type type-IV 26.4 24 0.00051 43.4 0.3 20 287-306 430-449 (797)
242 COG1125 OpuBA ABC-type proline 26.4 24 0.00052 38.4 0.3 28 506-541 185-212 (309)
243 PRK11664 ATP-dependent RNA hel 26.2 37 0.0008 42.3 1.9 32 270-304 6-37 (812)
244 PF06745 KaiC: KaiC; InterPro 26.1 33 0.00072 35.1 1.3 28 276-303 5-35 (226)
245 cd01850 CDC_Septin CDC/Septin. 26.1 23 0.0005 38.1 0.1 21 284-304 1-21 (276)
246 PRK11388 DNA-binding transcrip 26.0 33 0.00072 41.1 1.4 116 254-387 321-444 (638)
247 TIGR03158 cas3_cyano CRISPR-as 25.9 35 0.00076 38.0 1.5 25 280-304 7-31 (357)
248 KOG0739 AAA+-type ATPase [Post 25.8 42 0.0009 37.3 2.0 42 280-321 156-223 (439)
249 cd00464 SK Shikimate kinase (S 25.4 28 0.0006 32.9 0.5 16 289-304 1-16 (154)
250 PHA01747 putative ATP-dependen 25.2 29 0.00062 39.5 0.6 95 270-390 173-273 (425)
251 PRK07261 topology modulation p 25.2 28 0.0006 34.6 0.5 15 290-304 3-17 (171)
252 cd01379 MYSc_type_III Myosin m 25.0 88 0.0019 38.1 4.7 21 284-304 83-103 (653)
253 PF13476 AAA_23: AAA domain; P 24.6 23 0.00049 34.6 -0.2 17 288-304 20-36 (202)
254 PRK15424 propionate catabolism 24.6 39 0.00085 40.1 1.6 45 254-304 215-259 (538)
255 PRK10917 ATP-dependent DNA hel 24.6 48 0.001 40.4 2.4 39 262-304 261-299 (681)
256 TIGR02688 conserved hypothetic 24.5 25 0.00053 40.7 -0.1 25 284-310 208-232 (449)
257 KOG0726 26S proteasome regulat 24.5 60 0.0013 36.1 2.8 34 289-322 221-277 (440)
258 TIGR01313 therm_gnt_kin carboh 24.5 26 0.00057 33.8 0.1 15 290-304 1-15 (163)
259 COG0630 VirB11 Type IV secreto 24.4 25 0.00055 38.7 0.0 19 287-305 143-161 (312)
260 PTZ00110 helicase; Provisional 24.3 33 0.00072 40.5 1.0 24 279-304 161-184 (545)
261 PRK13767 ATP-dependent helicas 23.9 36 0.00078 42.7 1.2 23 280-304 42-64 (876)
262 TIGR02880 cbbX_cfxQ probable R 23.8 27 0.0006 37.7 0.2 16 289-304 60-75 (284)
263 cd01428 ADK Adenylate kinase ( 23.8 31 0.00066 34.0 0.5 15 290-304 2-16 (194)
264 TIGR03744 traC_PFL_4706 conjug 23.8 29 0.00062 43.6 0.4 22 285-306 473-494 (893)
265 CHL00181 cbbX CbbX; Provisiona 23.7 29 0.00063 37.6 0.3 15 290-304 62-76 (287)
266 cd01394 radB RadB. The archaea 23.6 42 0.00091 34.1 1.5 28 277-304 6-36 (218)
267 PRK01172 ski2-like helicase; P 23.5 41 0.00089 40.6 1.6 30 265-304 25-54 (674)
268 PF00931 NB-ARC: NB-ARC domain 23.4 47 0.001 34.8 1.8 31 274-304 4-36 (287)
269 PRK06696 uridine kinase; Valid 23.3 50 0.0011 34.0 2.0 30 275-304 7-39 (223)
270 cd01393 recA_like RecA is a b 23.2 44 0.00095 34.0 1.5 30 275-304 4-36 (226)
271 cd01386 MYSc_type_XVIII Myosin 23.1 53 0.0011 40.7 2.4 21 284-304 83-103 (767)
272 PRK08118 topology modulation p 23.1 32 0.0007 34.1 0.5 14 290-303 4-17 (167)
273 TIGR02322 phosphon_PhnN phosph 23.0 28 0.0006 34.2 0.0 16 289-304 3-18 (179)
274 PRK13700 conjugal transfer pro 23.0 27 0.00059 42.8 -0.1 17 290-306 188-204 (732)
275 KOG0953 Mitochondrial RNA heli 22.9 46 0.001 39.6 1.7 32 290-321 194-237 (700)
276 cd01983 Fer4_NifH The Fer4_Nif 22.8 32 0.00069 29.0 0.3 15 290-304 2-16 (99)
277 cd02020 CMPK Cytidine monophos 22.8 33 0.00072 31.9 0.5 15 290-304 2-16 (147)
278 PRK09361 radB DNA repair and r 22.4 48 0.001 33.9 1.6 30 275-304 8-40 (225)
279 TIGR03877 thermo_KaiC_1 KaiC d 22.2 48 0.001 34.5 1.6 26 277-302 8-36 (237)
280 TIGR00064 ftsY signal recognit 22.1 29 0.00064 37.4 -0.0 18 288-305 73-90 (272)
281 TIGR02030 BchI-ChlI magnesium 22.1 33 0.00072 38.2 0.4 29 276-304 14-42 (337)
282 TIGR01613 primase_Cterm phage/ 22.1 34 0.00075 37.1 0.5 30 275-304 61-93 (304)
283 PRK12724 flagellar biosynthesi 22.0 55 0.0012 37.9 2.1 18 288-305 224-241 (432)
284 COG3829 RocR Transcriptional r 21.9 49 0.0011 39.3 1.7 44 252-301 239-282 (560)
285 TIGR03817 DECH_helic helicase/ 21.9 42 0.0009 41.4 1.2 24 279-304 45-68 (742)
286 cd01124 KaiC KaiC is a circadi 21.8 37 0.00081 33.1 0.7 15 290-304 2-16 (187)
287 KOG0730 AAA+-type ATPase [Post 21.8 55 0.0012 39.6 2.1 34 288-321 469-525 (693)
288 KOG0330 ATP-dependent RNA heli 21.6 45 0.00098 38.1 1.3 26 277-304 90-115 (476)
289 PF10923 DUF2791: P-loop Domai 21.6 51 0.0011 37.9 1.8 27 278-304 40-66 (416)
290 TIGR02902 spore_lonB ATP-depen 21.5 55 0.0012 38.7 2.1 42 255-304 62-103 (531)
291 PRK13889 conjugal transfer rel 21.3 40 0.00087 42.9 0.9 26 278-304 354-379 (988)
292 KOG0354 DEAD-box like helicase 21.2 54 0.0012 40.3 1.9 26 276-304 68-93 (746)
293 PRK08233 hypothetical protein; 21.2 36 0.00077 33.1 0.4 15 290-304 6-20 (182)
294 PRK12726 flagellar biosynthesi 21.0 34 0.00074 39.1 0.2 20 288-307 207-226 (407)
295 TIGR00602 rad24 checkpoint pro 20.9 44 0.00096 40.5 1.1 17 289-305 112-128 (637)
296 PRK14723 flhF flagellar biosyn 20.9 35 0.00075 42.2 0.2 18 288-305 186-203 (767)
297 PRK11034 clpA ATP-dependent Cl 20.9 42 0.0009 41.5 0.9 46 256-309 184-229 (758)
298 PRK14721 flhF flagellar biosyn 20.9 34 0.00074 39.4 0.1 19 287-305 191-209 (420)
299 PRK10867 signal recognition pa 20.8 66 0.0014 37.2 2.4 19 287-305 100-118 (433)
300 PRK05986 cob(I)alamin adenolsy 20.8 32 0.00069 35.5 -0.1 27 287-313 22-48 (191)
301 PF08477 Miro: Miro-like prote 20.7 31 0.00066 31.0 -0.2 15 290-304 2-16 (119)
302 PRK06217 hypothetical protein; 20.7 37 0.0008 33.8 0.4 15 290-304 4-18 (183)
303 TIGR00231 small_GTP small GTP- 20.7 33 0.00072 31.1 0.0 15 290-304 4-18 (161)
304 TIGR00643 recG ATP-dependent D 20.7 59 0.0013 39.2 2.1 39 262-304 235-273 (630)
305 cd00820 PEPCK_HprK Phosphoenol 20.6 36 0.00079 31.9 0.3 16 289-304 17-32 (107)
306 TIGR03689 pup_AAA proteasome A 20.6 37 0.0008 40.1 0.4 16 289-304 218-233 (512)
307 TIGR02329 propionate_PrpR prop 20.6 38 0.00083 40.0 0.5 45 254-304 208-252 (526)
308 PRK10865 protein disaggregatio 20.5 60 0.0013 40.7 2.2 37 266-303 572-614 (857)
309 TIGR02397 dnaX_nterm DNA polym 20.4 59 0.0013 35.4 1.9 35 266-304 18-53 (355)
310 PHA02624 large T antigen; Prov 20.2 62 0.0014 39.1 2.1 26 279-304 421-448 (647)
311 COG5019 CDC3 Septin family pro 20.2 44 0.00096 37.8 0.9 21 284-304 20-40 (373)
312 cd02023 UMPK Uridine monophosp 20.2 34 0.00075 34.2 0.0 15 290-304 2-16 (198)
313 PF00485 PRK: Phosphoribulokin 20.1 34 0.00074 34.4 -0.1 15 290-304 2-16 (194)
314 cd02025 PanK Pantothenate kina 20.1 30 0.00065 35.9 -0.5 12 293-304 5-16 (220)
No 1
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-96 Score=802.11 Aligned_cols=506 Identities=48% Similarity=0.709 Sum_probs=437.2
Q ss_pred CCcccccccHHHHHHHhhcCCCCCCCCCCCCCCCcchHHHHHHHHHhCccccccccccCCCccc--------ccchhhhc
Q 004530 1 MGGQMQQSNAAAAAAALYDHPGGSMHNNAGPTTDAGDAVMARWLQSAGLQHLASPLASNGIDHR--------LLPNLLMQ 72 (746)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 72 (746)
||++|++.++ ++...||+. +-+..| |+.||+.|++.++.+|...+|+....... -+|+|.++
T Consensus 4 ~g~~~~i~rs-dgrih~a~v--------~~~~~d-~~~vtveW~E~~~~kgKe~~le~i~~lnp~l~~~~~~~~~~lp~~ 73 (676)
T KOG0246|consen 4 VGQHVKIKRS-DGRIHLAVV--------AEVNKD-GKCVTVEWVEKGETKGKELDLEEILLLNPELYSDLEHPIPNLPLK 73 (676)
T ss_pred ccceeEEecc-cCceeeeeE--------EEeccC-CcEEEEEhhhccccccccCCHHHHhhcChhhcccccCCCCCcccc
Confidence 6888888776 344667776 347788 99999999999999999999988765543 45666666
Q ss_pred cccccchHHHHHHHHHHHhhccCCCC-CCCCCCCCCcc---c--cccccCCCCC-CCccCCcCcc-cccccccCcccccc
Q 004530 73 GYGAQSAEEKQRLFKLMRNLNFNGES-GAEPHTPTAQT---S--GVVASDGLYS-PEFRGDFGAG-LLDLHAMDDTELLS 144 (746)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~d~~~~~ 144 (746)
|++++++.| +.|.+.++|+...+. .+-..+|+... . -+++..+|.. |.++|.|+++ ..+.|+|.+.|.+.
T Consensus 74 -~~~~~a~~~-~~~~~n~~i~~~~~~~~~rs~~~tg~~~~~~~~~~P~~~~~~~~p~~~~~~~a~~~rks~~v~e~e~l~ 151 (676)
T KOG0246|consen 74 -RPASTAINR-KGIEANRTIYESIEMIPQRSQRATGSSCKRLETALPSQRIFPPQPKSTGTAAAASARKSHAVKEVEKLQ 151 (676)
T ss_pred -ccccchhhh-hhhhhhhhcccccccchhhcccccccccccccccCCcccCCCCCCcccccchhhhhhhcccccchHHHH
Confidence 777777766 889999999855543 12222454443 1 3677777877 9999999998 89999999999998
Q ss_pred ccccCCCCCCCCCCCCcCCCCCcccccchhhhh-------hhccCCCCCCCCCCCccccccccCCCCCeEEEEEeCCCCc
Q 004530 145 EHMISEPFEPSPYIPSISKGFENDFNLTAGWQQ-------KEQTDADASAPVPTNEKESNARENNVAKIRVVVRKRPLNK 217 (746)
Q Consensus 145 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~IrV~VRVRPl~~ 217 (746)
|..... ++++|.+++..+..-+-.+...+|.- ++..+. .|. +........+|.||||.||+++
T Consensus 152 e~re~~-r~~~~~~r~~r~~~~~~d~~npn~e~~~mi~~~r~~L~~---~pl------s~~~~v~ehrI~VCVRKRPLnk 221 (676)
T KOG0246|consen 152 EQREKR-REPSPRMRSRRKSAQDVDPSNPNWEFAQMIREYREQLDS---SPL------SMGDGVNEHRICVCVRKRPLNK 221 (676)
T ss_pred HHHHHh-hccCccccccchhhcccCCCCCchHHHHHHHHHhhhhcc---ccc------ccCCCCccceEEEEeecCCCCc
Confidence 876654 88899988776444344444444421 111111 111 1123445689999999999999
Q ss_pred hhhccCCCcEEEE-eCCeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccC
Q 004530 218 KELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQT 296 (746)
Q Consensus 218 ~E~~~~~~~iv~v-~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQT 296 (746)
+|....+.++|++ +++.+++|+|+.++++++|.+++.|+||++||+.++++.||.-+++|||..+|+|.-+||||||||
T Consensus 222 kE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQT 301 (676)
T KOG0246|consen 222 KELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQT 301 (676)
T ss_pred hhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccC
Confidence 9999999999999 667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC------------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccccccceecCCCcEE
Q 004530 297 GSGKTFTMQ------------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVC 364 (746)
Q Consensus 297 GSGKTyTM~------------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~l~Ired~~~~v~ 364 (746)
||||||||. ||...+.+++|.++.++.++...+.|++||||||+.+|||||+++++|+++||++++|+
T Consensus 302 GSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVq 381 (676)
T KOG0246|consen 302 GSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQ 381 (676)
T ss_pred CCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEE
Confidence 999999994 57788999999999999999999999999999999999999999999999999999999
Q ss_pred EeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEEEEEEEEEC
Q 004530 365 IVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDL 444 (746)
Q Consensus 365 V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~skL~fVDL 444 (746)
|.||+|..|.+.+|++++|+.|++.|+++.|..|..|||||+||+|.+..... ....|||.||||
T Consensus 382 VVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~---------------~k~hGKfSlIDL 446 (676)
T KOG0246|consen 382 VVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGE---------------FKLHGKFSLIDL 446 (676)
T ss_pred EeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCc---------------ceeEeEEEEEEc
Confidence 99999999999999999999999999999999999999999999999976421 467899999999
Q ss_pred CCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhccCC-CcceEEEEEeCCCCCChH
Q 004530 445 AGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVG-NSKTVMISCISPNVGSCE 523 (746)
Q Consensus 445 AGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsLgG-nskT~mIa~VSPs~~~~e 523 (746)
||+||++++...+++++.||+.|||||+||..||+||..++.|+|||.||||++|+|||-| |++|+||+||||...+++
T Consensus 447 AGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScE 526 (676)
T KOG0246|consen 447 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCE 526 (676)
T ss_pred cCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccC
Q 004530 524 HTLNTLRYADRVKSLSKSGN 543 (746)
Q Consensus 524 ETLsTLrfA~Rak~I~~~~~ 543 (746)
+||||||||+|+|++.....
T Consensus 527 hTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 527 HTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999965543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6e-80 Score=692.87 Aligned_cols=333 Identities=39% Similarity=0.560 Sum_probs=295.1
Q ss_pred CCCCeEEEEEeCCCCchhhccCCCcEEEEeCCe--EEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 202 NVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNA--LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 202 ~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~--vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
...+|+|+||+||+...+.......++.++... +.+..|..... ...+.|+||.||+++++|++||+.++.|+|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIE----GKPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCccccc----CCCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 346899999999999998887777777777644 66666553322 134569999999999999999999999999
Q ss_pred HHhhcCCCcceeecccCCCCCccccCC-------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccc-
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTMQP-------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK- 351 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM~G-------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~- 351 (746)
++||+|||+||||||||||||||||.| |+||++.+||..|..... ...|.|+|||+|||||.|+|||++..
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~-~~~f~vrvS~lEiYnE~i~DLL~~~~~ 157 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE-KTRFLVRVSYLEIYNESIRDLLSPVNP 157 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc-cceEEEEeehHHHHhHHHHHHhCccCc
Confidence 999999999999999999999999975 899999999999987432 34799999999999999999999854
Q ss_pred -cccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCC
Q 004530 352 -KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (746)
Q Consensus 352 -~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~ 430 (746)
.+.+++++..||||.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+..... ..+
T Consensus 158 ~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~---------~~~ 228 (574)
T KOG4280|consen 158 KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS---------DGG 228 (574)
T ss_pred CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc---------CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999883211 112
Q ss_pred CCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCC-CccCCCCcchhhhhhccCCCcce
Q 004530 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI-HIPFRGSKLTEVLRDSFVGNSKT 509 (746)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~-hIPYRdSKLTrLLqDsLgGnskT 509 (746)
......|||+|||||||||..++++.+ .+++|+.+||+||++||+||.||.++.. ||||||||||+||||+|||||+|
T Consensus 229 ~~~~~~~rlnlvDLagsEr~~~tga~G-~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT 307 (574)
T KOG4280|consen 229 LMSGRSSKLNLVDLAGSERQSKTGAEG-ERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKT 307 (574)
T ss_pred ccccccceeeeeeccchhhhcccCccc-hhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceE
Confidence 225668999999999999988876654 5667999999999999999999998776 99999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCC
Q 004530 510 VMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQG 549 (746)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~ 549 (746)
+||+||+|...+++||++||+||+|+|.|++.+.++.+..
T Consensus 308 ~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 308 TMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred EEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc
Confidence 9999999999999999999999999999999987766543
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-79 Score=702.53 Aligned_cols=354 Identities=33% Similarity=0.480 Sum_probs=311.5
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccccccccceEEEeeeeeCCC-------CChHHHHHhhh
Q 004530 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTV 275 (746)
Q Consensus 203 ~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQ~eVy~~~v 275 (746)
..+|+|+||||||+..|..+...++|.+.++++++..|....+ ...|+||++||.+ ++|..||+.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~------~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg 76 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKD------APKFTFDYSYWSHDSEDPHFASQKQVYEDLG 76 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCccc------CCceecceeeecCCCCCCchhhHHHHHHHHh
Confidence 3578999999999999999999999999999988887764432 3459999999865 68999999999
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccCC--------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQP--------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLL 347 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G--------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL 347 (746)
.++++++|+|||+||||||||||||||||+| |+||++++||..+.....++..|.|.|||+|||||+|+|||
T Consensus 77 ~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 77 REMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred HHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 9999999999999999999999999999974 88999999999999877778899999999999999999999
Q ss_pred c-c--cccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeecccccccc
Q 004530 348 G-E--RKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424 (746)
Q Consensus 348 ~-~--~~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~ 424 (746)
+ + +..|.+||.+.-|+||.+|+.+.|+|+.|+..+|+.|++.|++++|+||+.|||||+||+|.+.+..-....
T Consensus 157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~--- 233 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT--- 233 (1221)
T ss_pred hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC---
Confidence 8 4 457999999999999999999999999999999999999999999999999999999999999887532211
Q ss_pred CCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC-------CCCccCCCCcchh
Q 004530 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-------QIHIPFRGSKLTE 497 (746)
Q Consensus 425 ~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~-------~~hIPYRdSKLTr 497 (746)
......+|||+|||||||||...++++ +.+++||.+|||||++||+||+||++. ..+||||||.||+
T Consensus 234 -----~l~sek~SKIsLVDLAGSERasstGa~-G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTW 307 (1221)
T KOG0245|consen 234 -----GLDSEKVSKISLVDLAGSERASSTGAN-GDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTW 307 (1221)
T ss_pred -----CCcceeeeeeeEEeccCcccccccCCC-ccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHH
Confidence 133667899999999999997666555 466789999999999999999999653 3489999999999
Q ss_pred hhhhccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCCCCcccccccCCCCCCCCCCcccHHhhhC
Q 004530 498 VLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVYE 577 (746)
Q Consensus 498 LLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~sl~~~~~~~ss~ss~~~~~~~~el~~ 577 (746)
||+++||||+||+||+++||..-+|+|||+|||||+|+|+|++.+.++.+.. .+-|-|
T Consensus 308 LLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpn----------------------aKLIRE 365 (1221)
T KOG0245|consen 308 LLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPN----------------------AKLIRE 365 (1221)
T ss_pred HHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCcc----------------------HHHHHH
Confidence 9999999999999999999999999999999999999999999987766443 345666
Q ss_pred chhhHHHHHhcccccc
Q 004530 578 PQQDVKVVDTGRRVTE 593 (746)
Q Consensus 578 l~~e~~~~~~~~r~~~ 593 (746)
|++|+..++...+..+
T Consensus 366 LreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 366 LREEVARLKSLLRAQG 381 (1221)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6666666665555443
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.5e-77 Score=645.63 Aligned_cols=323 Identities=41% Similarity=0.626 Sum_probs=291.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccc-----cccccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDL-----TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~-----~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
+|+|+|||||+++.|...+...+|.+.++.+++.+|...... ....+.+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 589999999999999888888999998877777776543221 223457899999999999999999999999999
Q ss_pred HHhhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccc-ccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RKK 352 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~-~~~ 352 (746)
+++++|||+||||||||||||||||+| ++||++++||..+.... .+..|.|++||+|||||+|+|||++ .++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 999999999999999999999999975 89999999999997643 4578999999999999999999998 678
Q ss_pred ccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCC
Q 004530 353 LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432 (746)
Q Consensus 353 l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~ 432 (746)
+.+++|+.++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+..... ....
T Consensus 160 l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~---------~~~~ 230 (338)
T cd01370 160 LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA---------SINQ 230 (338)
T ss_pred ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC---------CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998865321 1122
Q ss_pred CeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC---CCccCCCCcchhhhhhccCCCcce
Q 004530 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ---IHIPFRGSKLTEVLRDSFVGNSKT 509 (746)
Q Consensus 433 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~---~hIPYRdSKLTrLLqDsLgGnskT 509 (746)
....|+|+|||||||||..+... .+.+.+|+..||+||++|++||.+|...+ .|||||+||||+||||+|||||+|
T Consensus 231 ~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t 309 (338)
T cd01370 231 QVRIGKLSLIDLAGSERASATNN-RGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKT 309 (338)
T ss_pred cEEEEEEEEEECCCCccccccCC-CCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeE
Confidence 56789999999999999877654 44566799999999999999999999877 899999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHhccc
Q 004530 510 VMISCISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
+||+||||...+++||++||+||+|+|+|
T Consensus 310 ~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 310 VMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-78 Score=704.32 Aligned_cols=356 Identities=33% Similarity=0.525 Sum_probs=304.0
Q ss_pred ccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeC-Ce-EEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhh
Q 004530 199 RENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSD-NA-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVE 276 (746)
Q Consensus 199 ~~~~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~-~~-vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~ 276 (746)
.....-+|+|+|||||++..|.......+|.+++ .+ |.+...- ....-.+.|+||+||+|.+.|.+||+.+|.
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~-----~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI-----ASKQIDKTFTFDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccc-----ccccccceeecceeeCcchhHHHHHHHHHH
Confidence 3445579999999999999998888888888888 33 6654331 111136789999999999999999999999
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccCC--------------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCe
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQP--------------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGK 342 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G--------------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~ 342 (746)
|+|..|+.|||||||||||||+||||||.| |+||++.+||+.+.. .+..|.|.|||+|+|||.
T Consensus 119 p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEE 195 (1041)
T KOG0243|consen 119 PIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEE 195 (1041)
T ss_pred HHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHH
Confidence 999999999999999999999999999975 899999999999976 357899999999999999
Q ss_pred eecccccc----cccccee-----cCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEE
Q 004530 343 LFDLLGER----KKLCMRE-----DGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIK 413 (746)
Q Consensus 343 V~DLL~~~----~~l~Ire-----d~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~ 413 (746)
|+|||++. +.+.+.. +.+++|+|.||.|+.|+++.|++.+|.+|.+.|++++|.||.+|||||+||+|+|.
T Consensus 196 l~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvh 275 (1041)
T KOG0243|consen 196 LTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVH 275 (1041)
T ss_pred HHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEE
Confidence 99999763 2233332 56889999999999999999999999999999999999999999999999999996
Q ss_pred EeeccccccccCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCC
Q 004530 414 KHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGS 493 (746)
Q Consensus 414 q~~~~~~~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdS 493 (746)
......+ +......|||+||||||||-..++++.++ +.+|+..||+||++||+||.||.++..|||||+|
T Consensus 276 ike~t~~---------geelvK~GKLNLVDLAGSENI~RSGA~~~-RArEAG~INqSLLTLGRVInALVe~s~HIPYRES 345 (1041)
T KOG0243|consen 276 IKENTPE---------GEELVKIGKLNLVDLAGSENISRSGARNG-RAREAGEINQSLLTLGRVINALVEHSGHIPYRES 345 (1041)
T ss_pred EecCCCc---------chhhHhhcccceeeccccccccccccccc-hhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHH
Confidence 6532211 12245679999999999999999988887 5569999999999999999999999999999999
Q ss_pred cchhhhhhccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCCCCcccccccCCCCCCCCCCcccHH
Q 004530 494 KLTEVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVE 573 (746)
Q Consensus 494 KLTrLLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~sl~~~~~~~ss~ss~~~~~~~~ 573 (746)
||||||||||||.++|+||+||||+..+++|||+||.||.|||+|++.|..+.......+. + -...
T Consensus 346 KLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~ll---K-----------d~~~ 411 (1041)
T KOG0243|consen 346 KLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLL---K-----------DLYE 411 (1041)
T ss_pred HHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHH---H-----------HHHH
Confidence 9999999999999999999999999999999999999999999999999776543332221 1 1445
Q ss_pred hhhCchhhHHHHH
Q 004530 574 DVYEPQQDVKVVD 586 (746)
Q Consensus 574 el~~l~~e~~~~~ 586 (746)
||..|+.+++.++
T Consensus 412 EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 412 EIERLKRDLAAAR 424 (1041)
T ss_pred HHHHHHHHHHHhH
Confidence 6777777776554
No 6
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.4e-76 Score=636.02 Aligned_cols=315 Identities=67% Similarity=1.002 Sum_probs=295.5
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~-~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
.+|+|+|||||+.+.|...++.+++.++++ ++++++|+...+.....+.+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999999988788889999886 7999988877776666667899999999999999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccccccce
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMR 356 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~l~Ir 356 (746)
++|+|+||||||||||||||||+ |++||++++||..+.... ..|.|++||+|||||+|+|||++.+.+.++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~ 157 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRKRLSVL 157 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCccceeEE
Confidence 99999999999999999999998 799999999999997643 579999999999999999999999999999
Q ss_pred ecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEE
Q 004530 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (746)
Q Consensus 357 ed~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~ 436 (746)
+++.++++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+... ....
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---------------~~~~ 222 (322)
T cd01367 158 EDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---------------NKLL 222 (322)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---------------CeeE
Confidence 9999999999999999999999999999999999999999999999999999999987642 3467
Q ss_pred EEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhccCCCcceEEEEEeC
Q 004530 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCIS 516 (746)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT~mIa~VS 516 (746)
|+|+|||||||||..+.....+.+++|+..||+||++|++||.+|..++.|||||+||||+||||+|+|||+|+||+|||
T Consensus 223 s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vs 302 (322)
T cd01367 223 GKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATIS 302 (322)
T ss_pred EEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeC
Confidence 99999999999998887777777888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q 004530 517 PNVGSCEHTLNTLRYADRVK 536 (746)
Q Consensus 517 Ps~~~~eETLsTLrfA~Rak 536 (746)
|...+++||++||+||+|+|
T Consensus 303 p~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 303 PSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.7e-75 Score=633.21 Aligned_cols=314 Identities=35% Similarity=0.486 Sum_probs=275.8
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeC-CeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~-~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
.+|+|+|||||+...|...+...++...+ +.+.+... ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~ 70 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDC 70 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHH
Confidence 37999999999999987655555665544 33444321 14689999999999999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccCC--------------CchhHHHHHHHHhcccc---ccccceeeeeeeEEeeCCeeec
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQP--------------LPLRAAEDLVRLLHQPV---YRNQRFKLWLSYFEIYGGKLFD 345 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~G--------------l~~ra~~~LF~~i~~~~---~~~~~f~V~vS~lEIYnE~V~D 345 (746)
|+|||+||||||||||||||||+| ++||++++||..+.... .....|.|++||+|||||+|||
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~D 150 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITD 150 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeee
Confidence 999999999999999999999965 67999999999886532 2345789999999999999999
Q ss_pred ccccc-ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeecccccccc
Q 004530 346 LLGER-KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRR 424 (746)
Q Consensus 346 LL~~~-~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~ 424 (746)
||++. ..+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 151 LL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~---- 226 (337)
T cd01373 151 LLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS---- 226 (337)
T ss_pred CCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC----
Confidence 99875 5799999999999999999999999999999999999999999999999999999999999987542211
Q ss_pred CCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC----CCCCccCCCCcchhhhh
Q 004530 425 NNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN----DQIHIPFRGSKLTEVLR 500 (746)
Q Consensus 425 ~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~----~~~hIPYRdSKLTrLLq 500 (746)
......|+|+|||||||||..+++. .+.+++|+..||+||++|++||.+|.+ +..|||||+||||+|||
T Consensus 227 ------~~~~~~s~l~~VDLAGSEr~~~~~~-~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~ 299 (337)
T cd01373 227 ------STNIRTSRLNLVDLAGSERQKDDGA-EGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLR 299 (337)
T ss_pred ------CCcEEEEEEEEEECCCCCcccccCC-ccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHH
Confidence 1145679999999999999877654 456678999999999999999999964 46899999999999999
Q ss_pred hccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhccc
Q 004530 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
|+|||||+|+||+||||...+++||++||+||+|+|.|
T Consensus 300 dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 300 DSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999986
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.7e-75 Score=683.53 Aligned_cols=347 Identities=32% Similarity=0.480 Sum_probs=295.1
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 203 ~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
..+|+|||||||++..|. +...++.+.++.+.+. .+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~sv 161 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPLVENC 161 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999998863 3334555555556553 3589999999999999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccCC----------------CchhHHHHHHHHhcccc----ccccceeeeeeeEEeeCCe
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQP----------------LPLRAAEDLVRLLHQPV----YRNQRFKLWLSYFEIYGGK 342 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~G----------------l~~ra~~~LF~~i~~~~----~~~~~f~V~vS~lEIYnE~ 342 (746)
|+|||+||||||||||||||||+| |+||++++||..+.... .....|.|+|||+|||||+
T Consensus 162 LdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEk 241 (1320)
T PLN03188 162 LAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQ 241 (1320)
T ss_pred hcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCc
Confidence 999999999999999999999965 78999999999986421 2345799999999999999
Q ss_pred eecccccc-ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccc
Q 004530 343 LFDLLGER-KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKES 421 (746)
Q Consensus 343 V~DLL~~~-~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~ 421 (746)
|||||++. +.+.|++|+.++++|.||+++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+......
T Consensus 242 I~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~- 320 (1320)
T PLN03188 242 ITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA- 320 (1320)
T ss_pred ceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC-
Confidence 99999875 5789999999999999999999999999999999999999999999999999999999999987542111
Q ss_pred cccCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC-----CCCCccCCCCcch
Q 004530 422 FRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN-----DQIHIPFRGSKLT 496 (746)
Q Consensus 422 ~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~-----~~~hIPYRdSKLT 496 (746)
........|+|+|||||||||...++.. +.+++|+.+||+||++|++||.+|.. +..|||||+||||
T Consensus 321 -------dg~ss~r~SkLnLVDLAGSER~kkTga~-G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLT 392 (1320)
T PLN03188 321 -------DGLSSFKTSRINLVDLAGSERQKLTGAA-GDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLT 392 (1320)
T ss_pred -------CCCcceEEEEEEEEECCCchhccccCcc-cHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHH
Confidence 1112456799999999999998776544 45667999999999999999999974 4579999999999
Q ss_pred hhhhhccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCCCCcccccccCCCCCCCCCCcccHHhhh
Q 004530 497 EVLRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPINKDTSSASSIPVSADVEDVY 576 (746)
Q Consensus 497 rLLqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~sl~~~~~~~ss~ss~~~~~~~~el~ 576 (746)
+||||+|||||+|+||+||||...+++||++||+||+|+|+|++.+.++..... + .....+.|.
T Consensus 393 rLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~--------~--------vn~LrelIr 456 (1320)
T PLN03188 393 FLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD--------D--------VNFLREVIR 456 (1320)
T ss_pred HHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh--------h--------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999998866543211 0 112445777
Q ss_pred CchhhHHHHHhcc
Q 004530 577 EPQQDVKVVDTGR 589 (746)
Q Consensus 577 ~l~~e~~~~~~~~ 589 (746)
+|++|+..++...
T Consensus 457 ~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 457 QLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888777653
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4e-75 Score=632.07 Aligned_cols=320 Identities=29% Similarity=0.521 Sum_probs=282.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeC-CeEEEeCCCccccc----cccccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDL----TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~-~~vtv~~p~~~~~~----~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
+|+|+|||||+++.|......++|.+.+ +++.++.|...... ....+.+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 6999999999999998777777776655 45888887653322 123457899999999999999999999999999
Q ss_pred HHhhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc---
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--- 350 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~--- 350 (746)
+++++|+|+||||||||||||||||+| ++||++++||+.+.. |.|+|||+|||||+|+|||++.
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~~ 154 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPSS 154 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCcccc
Confidence 999999999999999999999999985 899999999999865 8999999999999999999764
Q ss_pred ----ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCC
Q 004530 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (746)
Q Consensus 351 ----~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~ 426 (746)
+++.+++|+.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+........
T Consensus 155 ~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~---- 230 (345)
T cd01368 155 TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD---- 230 (345)
T ss_pred ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccc----
Confidence 368999999999999999999999999999999999999999999999999999999999998765332110
Q ss_pred CCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC------CCCCccCCCCcchhhhh
Q 004530 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN------DQIHIPFRGSKLTEVLR 500 (746)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~------~~~hIPYRdSKLTrLLq 500 (746)
..........++|+|||||||||..++.. .+.+++|+..||+||++|++||.+|.+ +..|||||+||||+|||
T Consensus 231 ~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~ 309 (345)
T cd01368 231 VDQDKDQITVSQLSLVDLAGSERTSRTQN-TGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQ 309 (345)
T ss_pred cccCCCceEEEEEEEEecccccccccccc-cchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHH
Confidence 01122356789999999999999887754 456667999999999999999999976 56899999999999999
Q ss_pred hccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 004530 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVK 536 (746)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak 536 (746)
|+|+|||+|+||+||||...+++||++||+||.+++
T Consensus 310 ~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 310 NYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999975
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.6e-74 Score=627.92 Aligned_cols=330 Identities=35% Similarity=0.514 Sum_probs=296.8
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccccccccceEEEeeeeeCCC-------CChHHHHHhhhh
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTVE 276 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQ~eVy~~~v~ 276 (746)
++|+|+|||||++..|...++..++.++++.+++..|.... ......+.|.||+||+++ ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999999888899999999999999886421 123356899999999999 999999999999
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~ 350 (746)
|+|+++++|+|+||||||||||||||||+ ||+||++++||+.+.........|.|+|||+|||||+|||||++.
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 99999999999999999999999999997 489999999999998755556789999999999999999999877
Q ss_pred ----ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCC
Q 004530 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (746)
Q Consensus 351 ----~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~ 426 (746)
..+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~------ 232 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE------ 232 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC------
Confidence 4789999999999999999999999999999999999999999999999999999999999987653211
Q ss_pred CCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC--------CCCccCCCCcchhh
Q 004530 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--------QIHIPFRGSKLTEV 498 (746)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~--------~~hIPYRdSKLTrL 498 (746)
........++|+|||||||||..+.+.. +.+++|+..||+||++|++||.+|... ..|||||+||||+|
T Consensus 233 --~~~~~~~~s~l~~VDLAGsEr~~~~~~~-~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~l 309 (356)
T cd01365 233 --TDLTTEKVSKISLVDLAGSERASSTGAE-GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWL 309 (356)
T ss_pred --CCCCceEEEEEEeeeccccccccccccc-chhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHH
Confidence 1123567899999999999998776544 466679999999999999999999753 58999999999999
Q ss_pred hhhccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCc
Q 004530 499 LRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544 (746)
Q Consensus 499 LqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~ 544 (746)
|||+|+|+++|+||+||+|...+++||++||+||+|+++|++.|..
T Consensus 310 L~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 310 LKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 9999999999999999999999999999999999999999988753
No 11
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-74 Score=636.04 Aligned_cols=321 Identities=36% Similarity=0.530 Sum_probs=290.0
Q ss_pred CCCCeEEEEEeCCCCchhhccCCCcEEEEeC--CeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 202 NVAKIRVVVRKRPLNKKELSRKEEDIVTVSD--NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 202 ~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~--~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
..++|+|+||+||++..|...+...+..+.+ +++.+...+ +.+.|.||+||.|+++|.+||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~---------~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK---------ETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc---------ccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 6789999999999999998777776666655 234433221 23789999999999999999999999999
Q ss_pred HHhhcCCCcceeecccCCCCCccccC---------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTMQ---------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM~---------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~ 350 (746)
++||.|||+||||||||||||||||. ||+||++++||..|.. ...+..|.|.|||||||+|+|+|||++.
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys-~~~n~efhVkVsy~EIYmEKi~DLL~~~ 154 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYS-MEENLEFHVKVSYFEIYMEKIRDLLDPE 154 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhc-CcccceEEEEEEeehhhhhHHHHHhCcc
Confidence 99999999999999999999999996 5889999999999976 4456789999999999999999999976
Q ss_pred -ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCC
Q 004530 351 -KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429 (746)
Q Consensus 351 -~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~ 429 (746)
..+.+++|....++|+|++++.|.++++++++|+.|..+|.++.|.||.+|||||.||+|+|++.+...
T Consensus 155 k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---------- 224 (607)
T KOG0240|consen 155 KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---------- 224 (607)
T ss_pred cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc----------
Confidence 479999999999999999999999999999999999999999999999999999999999999976332
Q ss_pred CCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC-CCCccCCCCcchhhhhhccCCCcc
Q 004530 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-QIHIPFRGSKLTEVLRDSFVGNSK 508 (746)
Q Consensus 430 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~-~~hIPYRdSKLTrLLqDsLgGnsk 508 (746)
.....|||+||||||||+..++++.+ ....|+++||+||.|||+||+||+++ ..|||||||||||||||+|||||+
T Consensus 225 --~~~~~gkLyLVDLaGSEkvsKtga~g-~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsR 301 (607)
T KOG0240|consen 225 --KRKLSGKLYLVDLAGSEKVSKTGAEG-AVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSR 301 (607)
T ss_pred --hhhccccEEEEEcccccccCCCCccc-hhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcc
Confidence 25678999999999999988877655 55679999999999999999999998 899999999999999999999999
Q ss_pred eEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcC
Q 004530 509 TVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTK 545 (746)
Q Consensus 509 T~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~ 545 (746)
|.+|+|++|+..+..||.+||+|++|+|.|++....+
T Consensus 302 TtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n 338 (607)
T KOG0240|consen 302 TTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVN 338 (607)
T ss_pred eEEEEecCCccccccccccchhhccccccccchhhhh
Confidence 9999999999999999999999999999999877544
No 12
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-74 Score=664.29 Aligned_cols=330 Identities=37% Similarity=0.552 Sum_probs=287.2
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEe-CCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHH
Q 004530 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVH-EPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (746)
Q Consensus 203 ~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~-~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~ 281 (746)
..+|.|+|||||+++.+...+..+.+.+.++...+. ......+. .....|.||+||+++++|++||+.+++|+|++
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEK---SKPEKYEFDRVFGEESTQEDVYERTTKPLLLS 81 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccc---ccccceeeeeecCCCCCHHHHHHhccHHHHHH
Confidence 358999999999999876666666666655553332 21111111 11578999999999999999999999999999
Q ss_pred hhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccccc-cc
Q 004530 282 IFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKK-LC 354 (746)
Q Consensus 282 vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~-l~ 354 (746)
+++|+|+||||||||||||||||.| ++|.++.+||..|.... ...|.|.|||+|||||.|+|||++... +.
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ 159 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGDLR 159 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCCce
Confidence 9999999999999999999999976 67899999999998754 678999999999999999999998754 99
Q ss_pred ceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCe
Q 004530 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (746)
Q Consensus 355 Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~ 434 (746)
|++|+.++++|.||+++.|.|+++++.+|..|.++|+++.|.+|..|||||+||+|.|.+...... .
T Consensus 160 irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~------------~- 226 (675)
T KOG0242|consen 160 LREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS------------S- 226 (675)
T ss_pred EeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc------------c-
Confidence 999999999999999999999999999999999999999999999999999999999987642110 1
Q ss_pred EEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC--CCCccCCCCcchhhhhhccCCCcceEEE
Q 004530 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--QIHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (746)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~--~~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (746)
..++|+|||||||||...++..+ .+++||.+||+||++||+||.+|.++ ..||||||||||||||++|||||+|+||
T Consensus 227 ~~s~L~lIDLAGSERas~T~~~G-~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I 305 (675)
T KOG0242|consen 227 RVSKLNLIDLAGSERASRTGNEG-VRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAII 305 (675)
T ss_pred hhheehhhhhhhhhhhhhhhccc-eeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEE
Confidence 56899999999999977766544 55679999999999999999999876 5689999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCCCC
Q 004530 513 SCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQN 551 (746)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~ 551 (746)
|||+|...+++||.+||+||+|+|+|++....+......
T Consensus 306 ~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~ 344 (675)
T KOG0242|consen 306 ATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDK 344 (675)
T ss_pred EEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchh
Confidence 999999999999999999999999999888665544443
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3e-72 Score=606.70 Aligned_cols=319 Identities=40% Similarity=0.599 Sum_probs=285.8
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeC--CeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHH
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSD--NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~--~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~ 281 (746)
.+|+|+|||||+++.|...+...++.+++ ..|.++.|... .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 47999999999999998878888888764 44788777542 2235678999999999999999999999999999
Q ss_pred hhcCCCcceeecccCCCCCccccCC---------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccc-
Q 004530 282 IFQRTKATCFAYGQTGSGKTFTMQP---------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK- 351 (746)
Q Consensus 282 vl~G~N~tIfAYGQTGSGKTyTM~G---------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~- 351 (746)
+++|+|+||||||||||||||||+| ++||++++||..+.... ...|.|.|||+|||||+|+|||++..
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 154 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQK 154 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCC
Confidence 9999999999999999999999975 78999999999987643 36799999999999999999998764
Q ss_pred -cccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCC
Q 004530 352 -KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (746)
Q Consensus 352 -~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~ 430 (746)
.+.+++++.++++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+... ..
T Consensus 155 ~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---------~~ 225 (333)
T cd01371 155 KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE---------DG 225 (333)
T ss_pred CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC---------CC
Confidence 78999999999999999999999999999999999999999999999999999999999998865321 11
Q ss_pred CCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCC-CccCCCCcchhhhhhccCCCcce
Q 004530 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI-HIPFRGSKLTEVLRDSFVGNSKT 509 (746)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~-hIPYRdSKLTrLLqDsLgGnskT 509 (746)
......|+|+|||||||||..+.+. .+.+.+|+..||+||.+|++||.+|.+++. |||||+||||+||+|+|+|+|+|
T Consensus 226 ~~~~~~s~L~~VDLAGsEr~~~~~~-~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t 304 (333)
T cd01371 226 ENHIRVGKLNLVDLAGSERQSKTGA-TGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKT 304 (333)
T ss_pred CCcEEEEEEEEEECCCCCcccccCC-chhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceE
Confidence 1245689999999999999776654 445667999999999999999999998775 99999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHhccc
Q 004530 510 VMISCISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
+||+||+|...+++||++||+||+|+|+|
T Consensus 305 ~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 305 VMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.9e-72 Score=602.63 Aligned_cols=311 Identities=40% Similarity=0.599 Sum_probs=283.0
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHhh
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIF 283 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~-~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl 283 (746)
+|+|+||+||++..|. .++.+++.++++ .+.+.++ ...+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l 70 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSAL 70 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999987 356678888877 5666554 2357999999999999999999999999999999
Q ss_pred cCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc-ccccce
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-KKLCMR 356 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~-~~l~Ir 356 (746)
+|+|+||||||||||||||||+ |++||++++||..+.... +..|.|++||+|||||+|+|||++. ..+.++
T Consensus 71 ~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~ 148 (321)
T cd01374 71 EGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQELRIR 148 (321)
T ss_pred CCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCCceEE
Confidence 9999999999999999999998 689999999999987643 5679999999999999999999987 789999
Q ss_pred ecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEE
Q 004530 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (746)
Q Consensus 357 ed~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~ 436 (746)
+++.+++++.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...... .......
T Consensus 149 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~---------~~~~~~~ 219 (321)
T cd01374 149 EDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS---------ESGTVRV 219 (321)
T ss_pred ECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC---------CCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999988653221 1225678
Q ss_pred EEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC--CCccCCCCcchhhhhhccCCCcceEEEEE
Q 004530 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--IHIPFRGSKLTEVLRDSFVGNSKTVMISC 514 (746)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~--~hIPYRdSKLTrLLqDsLgGnskT~mIa~ 514 (746)
|+|+||||||+||..+.+ .+.+++|+..||+||.+|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+||+|
T Consensus 220 s~l~~vDLAGsE~~~~~~--~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~ 297 (321)
T cd01374 220 STLNLIDLAGSERASQTG--AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICT 297 (321)
T ss_pred EEEEEEECCCCCccccCC--CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999987776 55667799999999999999999999885 99999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhccc
Q 004530 515 ISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 515 VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
|||...+++||++||+||+|+++|
T Consensus 298 vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 298 ISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred eCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=6.4e-72 Score=607.95 Aligned_cols=325 Identities=37% Similarity=0.537 Sum_probs=288.7
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC--eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHH
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN--ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~--~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~ 281 (746)
.+|+|+|||||+...|...+...++.+.+. .|.+..+.. .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999987777788888764 355544321 1224678999999999999999999999999999
Q ss_pred hhcCCCcceeecccCCCCCccccCC-----------------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeee
Q 004530 282 IFQRTKATCFAYGQTGSGKTFTMQP-----------------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLF 344 (746)
Q Consensus 282 vl~G~N~tIfAYGQTGSGKTyTM~G-----------------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~ 344 (746)
+++|+|+||||||||||||||||+| ++||++.+||..+... ...|.|+|||+|||||+|+
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~ 153 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELF 153 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeee
Confidence 9999999999999999999999964 6799999999998764 5679999999999999999
Q ss_pred cccccc----ccccceec--CCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeecc
Q 004530 345 DLLGER----KKLCMRED--GRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEV 418 (746)
Q Consensus 345 DLL~~~----~~l~Ired--~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~ 418 (746)
|||++. +++.++++ ..++++|.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 154 DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 154 DLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred eCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 999874 57889999 689999999999999999999999999999999999999999999999999999876422
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhh
Q 004530 419 KESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEV 498 (746)
Q Consensus 419 ~~~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrL 498 (746)
.. .......|+|+||||||+||..+.+..+ .+.+|+..||+||++|++||.+|..++.|||||+||||+|
T Consensus 234 ~~---------~~~~~~~s~l~~VDLAGsE~~~~~~~~~-~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~l 303 (352)
T cd01364 234 IS---------GEELVKIGKLNLVDLAGSENIGRSGAEN-KRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRL 303 (352)
T ss_pred CC---------CCccEEEEEEEEEECCCccccccccCcc-hhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHH
Confidence 11 1124567999999999999977765544 5667999999999999999999999999999999999999
Q ss_pred hhhccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCc
Q 004530 499 LRDSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (746)
Q Consensus 499 LqDsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (746)
|+|+|+|||+|+||+||||...+++||++||+||+|+++|++.|.+++
T Consensus 304 L~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 304 LQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999999999999997654
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=8.8e-72 Score=600.59 Aligned_cols=312 Identities=40% Similarity=0.583 Sum_probs=283.5
Q ss_pred CCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 204 AKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 204 ~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~-~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
.+|+|+|||||+++.|...+...++.+.++ +|++..+. ..+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~---------~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~ 72 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD---------DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDV 72 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC---------CceEEEcCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999977777888888876 47776542 45789999999999999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccC---------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc-cc
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQ---------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER-KK 352 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~---------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~-~~ 352 (746)
++|+|+||||||||||||||||+ |++||++++||..+... ..+..|.|++||+|||+|+++|||++. ..
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 151 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDN 151 (325)
T ss_pred HcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCC
Confidence 99999999999999999999996 47899999999998764 345679999999999999999999875 57
Q ss_pred ccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCC
Q 004530 353 LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESR 432 (746)
Q Consensus 353 l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~ 432 (746)
+.++++..+++++.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 152 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~------------~ 219 (325)
T cd01369 152 LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET------------G 219 (325)
T ss_pred ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC------------C
Confidence 8999999999999999999999999999999999999999999999999999999999998865321 1
Q ss_pred CeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC-CCccCCCCcchhhhhhccCCCcceEE
Q 004530 433 GKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ-IHIPFRGSKLTEVLRDSFVGNSKTVM 511 (746)
Q Consensus 433 ~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~-~hIPYRdSKLTrLLqDsLgGnskT~m 511 (746)
....|+|+||||||+||..+.+. .+.+.+|+..||+||.+|++||.+|.+++ .|||||+||||+||+|+|+|+|+|+|
T Consensus 220 ~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~ 298 (325)
T cd01369 220 SKKRGKLFLVDLAGSEKVSKTGA-EGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTL 298 (325)
T ss_pred CEEEEEEEEEECCCCCcccccCC-cchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEE
Confidence 46789999999999999766544 44566799999999999999999999887 99999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHhccc
Q 004530 512 ISCISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 512 Ia~VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
|+||||...+++||++||+||+|+|+|
T Consensus 299 I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 299 IICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.4e-71 Score=598.21 Aligned_cols=306 Identities=36% Similarity=0.551 Sum_probs=274.6
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC------eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhh
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN------ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPI 278 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~------~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pL 278 (746)
+|+|+|||||+.+.|. +...++.+.+. .+.+..|... .+.+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~------~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNR------GETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCC------CCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 5899999999999883 23344544333 5777776422 24678999999999999999999999999
Q ss_pred HHHhhcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccc-cc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RK 351 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~-~~ 351 (746)
|+.+++|+|+||||||||||||||||+ |++||++++||+.+... ...|.|++||+|||||+|+|||++ ..
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~ 149 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKK 149 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCC
Confidence 999999999999999999999999997 59999999999988653 367999999999999999999987 56
Q ss_pred cccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCC
Q 004530 352 KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNES 431 (746)
Q Consensus 352 ~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~ 431 (746)
.+.+++++.+++++.|++++.|.+++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 150 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------------- 216 (319)
T cd01376 150 ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------------- 216 (319)
T ss_pred CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-------------
Confidence 8999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhccCCCcceEE
Q 004530 432 RGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVM 511 (746)
Q Consensus 432 ~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT~m 511 (746)
....|+|+|||||||||..+.+ ..+.+.+|+..||+||++|++||.+|..+..|||||+||||+||||+|+|+|+|+|
T Consensus 217 -~~~~s~l~~VDLAGsE~~~~~~-~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~ 294 (319)
T cd01376 217 -IQLEGKLNLIDLAGSEDNRRTG-NEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIM 294 (319)
T ss_pred -ceEEEEEEEEECCCCCcccccC-CccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEE
Confidence 2568999999999999976654 44566679999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHhc
Q 004530 512 ISCISPNVGSCEHTLNTLRYADRVK 536 (746)
Q Consensus 512 Ia~VSPs~~~~eETLsTLrfA~Rak 536 (746)
|+||||...+++|||+||+||+|+|
T Consensus 295 i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 295 VANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.5e-71 Score=599.34 Aligned_cols=319 Identities=39% Similarity=0.611 Sum_probs=281.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC--eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN--ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~--~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
+|+|+||+||+++.|...+...++.+.+. .+++.. .+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999987776777766543 344432 4689999999999999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccCC------------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQP------------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER 350 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~G------------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~ 350 (746)
++|+|+||||||||||||||||+| ++||++++||..+.... ....|.|.|||+|||||+|+|||++.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~ 148 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPS 148 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCc
Confidence 999999999999999999999964 78999999999998643 34679999999999999999999875
Q ss_pred ----ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCC
Q 004530 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (746)
Q Consensus 351 ----~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~ 426 (746)
..+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......... .
T Consensus 149 ~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~--~ 226 (341)
T cd01372 149 TSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP--M 226 (341)
T ss_pred ccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc--c
Confidence 5789999999999999999999999999999999999999999999999999999999999998764311100 0
Q ss_pred CCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC---CCccCCCCcchhhhhhcc
Q 004530 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ---IHIPFRGSKLTEVLRDSF 503 (746)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~---~hIPYRdSKLTrLLqDsL 503 (746)
..........|+|+||||||+||..+... .+.+.+|+..||+||++|++||.+|..++ .|||||+||||+||+|+|
T Consensus 227 ~~~~~~~~~~s~l~~VDLAGsE~~~~~~~-~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~L 305 (341)
T cd01372 227 SGDDKNSTLTSKFHFVDLAGSERLKKTGA-TGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSL 305 (341)
T ss_pred cccCCCceeeEEEEEEECCCCcccccccC-chhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhc
Confidence 11122357789999999999999776554 44566799999999999999999998876 799999999999999999
Q ss_pred CCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccc
Q 004530 504 VGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLS 539 (746)
Q Consensus 504 gGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~ 539 (746)
+|+++|+||+||||...+++|||+||+||+|+|+|+
T Consensus 306 gg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 306 GGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999985
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6e-71 Score=596.91 Aligned_cols=315 Identities=35% Similarity=0.512 Sum_probs=277.2
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccc--cccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDL--TAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~--~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
+|+|+||+||+...+. ....+..++..+++..|+..... ....+.+.|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 5899999999987442 12233333455888888765432 23345678999999999 999999999999999999
Q ss_pred hcCCCcceeecccCCCCCccccCC---------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc---
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQP---------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--- 350 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~G---------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~--- 350 (746)
++|+|+||||||||||||||||+| ++||++++||..+... .+..|.|++||+|||||+|+|||++.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999964 8899999999998763 35679999999999999999999876
Q ss_pred ----ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCC
Q 004530 351 ----KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (746)
Q Consensus 351 ----~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~ 426 (746)
+.+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~------- 227 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA------- 227 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC-------
Confidence 468999999999999999999999999999999999999999999999999999999999999864321
Q ss_pred CCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC-CCccCCCCcchhhhhhccCC
Q 004530 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ-IHIPFRGSKLTEVLRDSFVG 505 (746)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~-~hIPYRdSKLTrLLqDsLgG 505 (746)
.......++|+|||||||||..+.+. .+...+|+..||+||++|++||.+|.+++ .|||||+||||+||+|+|+|
T Consensus 228 ---~~~~~~~s~l~~VDLAGsEr~~~~~~-~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg 303 (334)
T cd01375 228 ---GSEVVRLSKLNLVDLAGSERVSKTGV-SGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGG 303 (334)
T ss_pred ---CCCceEEEEEEEEECCCCCccccccC-chhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCC
Confidence 12256789999999999999777554 34566799999999999999999999988 99999999999999999999
Q ss_pred CcceEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 004530 506 NSKTVMISCISPNVGSCEHTLNTLRYADRVK 536 (746)
Q Consensus 506 nskT~mIa~VSPs~~~~eETLsTLrfA~Rak 536 (746)
+|+|+||+||||...+++|||+||+||+|++
T Consensus 304 ~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 304 NCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-72 Score=628.38 Aligned_cols=345 Identities=35% Similarity=0.531 Sum_probs=309.1
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccccccccceEEEeeeeeCCC-------CChHHHHHhhh
Q 004530 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDER-------VTNDEVYRVTV 275 (746)
Q Consensus 203 ~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~-------asQ~eVy~~~v 275 (746)
..+|||+|||||++.+|......|++.++.+..+++.|.....+......+.|.||++|++- +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999999999999999999999999888877655555444567899999999764 67999999999
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE 349 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~ 349 (746)
.-+|+.+|+|||+||||||||||||||||.| |+||.+..||..|......+..|+|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999974 8999999999999887777889999999999999999999998
Q ss_pred c---ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCC
Q 004530 350 R---KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNN 426 (746)
Q Consensus 350 ~---~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~ 426 (746)
+ ..++++++.--|+||.||+++.|+|++|+-.+|..|+++|++++|.||..|||||+||.|.|.+.......
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~kt----- 237 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKT----- 237 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecccc-----
Confidence 5 46899999999999999999999999999999999999999999999999999999999999987532221
Q ss_pred CCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC------CCCCccCCCCcchhhhh
Q 004530 427 DGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN------DQIHIPFRGSKLTEVLR 500 (746)
Q Consensus 427 ~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~------~~~hIPYRdSKLTrLLq 500 (746)
.......+||.+||||||||+.++++.+. +.+|+.+||+||++||.||+||++ +..+||||||.||+|||
T Consensus 238 ---g~SgeKvsklslVDLAgserasktga~g~-rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLk 313 (1714)
T KOG0241|consen 238 ---GHSGEKVSKLSLVDLAGSERASKTGAAGS-RLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLK 313 (1714)
T ss_pred ---CcchhheeeeeEEEeccccccccccchhh-hhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHH
Confidence 22245679999999999999888877654 557999999999999999999965 24689999999999999
Q ss_pred hccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCccCCCCccccc
Q 004530 501 DSFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKDQGQNSLIPI 556 (746)
Q Consensus 501 DsLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~~~~~sl~~~ 556 (746)
|+|||||+|+||+||||.+.+|+|||+|||||.|+|+|+++..++.+.....+..+
T Consensus 314 D~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirEl 369 (1714)
T KOG0241|consen 314 DNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIREL 369 (1714)
T ss_pred hhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999988776655544444
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.8e-70 Score=586.14 Aligned_cols=316 Identities=36% Similarity=0.527 Sum_probs=282.9
Q ss_pred CCCeEEEEEeCCCCchhhccCCCcEEEEeCC--e-EEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 203 VAKIRVVVRKRPLNKKELSRKEEDIVTVSDN--A-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 203 ~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~--~-vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
+|+|+|+||+||+.+.|. ....+++.+.+. . +.+..+ ..+.+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 478999999999999886 445566777665 3 444332 1246789999999999999999997 69999
Q ss_pred HHhhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeecccccc---
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGER--- 350 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~--- 350 (746)
+++++|+|+||||||+|||||||||+| ++|+++++||..+.....++..|.|++||+|||+|+++|||++.
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~ 150 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP 150 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC
Confidence 999999999999999999999999975 79999999999998765556789999999999999999999874
Q ss_pred -ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCC
Q 004530 351 -KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGN 429 (746)
Q Consensus 351 -~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~ 429 (746)
..+.+++++.+++++.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|.+.+..
T Consensus 151 ~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----------- 219 (329)
T cd01366 151 KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----------- 219 (329)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----------
Confidence 67899999999999999999999999999999999999999999999999999999999999886532
Q ss_pred CCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhccCCCcce
Q 004530 430 ESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKT 509 (746)
Q Consensus 430 ~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT 509 (746)
......|+|+||||||+|+..+.... +.+++|+..||+||.+|++||.+|..+..|||||+||||+||+|+|+|+++|
T Consensus 220 -~~~~~~s~l~~VDLaGsE~~~~~~~~-~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t 297 (329)
T cd01366 220 -TGEQTRGKLNLVDLAGSERLKKSGAT-GDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKT 297 (329)
T ss_pred -CCcEEEEEEEEEECCCCccccccccc-chhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceE
Confidence 12467899999999999998766544 4455799999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHhcccccc
Q 004530 510 VMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541 (746)
Q Consensus 510 ~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~ 541 (746)
+||+||||...+++||++||+||+|+++|+++
T Consensus 298 ~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 298 LMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999753
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.9e-71 Score=635.56 Aligned_cols=335 Identities=35% Similarity=0.493 Sum_probs=297.4
Q ss_pred ccccccccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeCC-eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHH
Q 004530 193 EKESNARENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDN-ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVY 271 (746)
Q Consensus 193 ~~~~~~~~~~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~-~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy 271 (746)
.+.+|.....+|+|||+|||||+.+.|.......++..++. .+.+..|..... .+.+.|.||+||+|.++|++||
T Consensus 303 ~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~fdkVf~p~~sQ~~VF 378 (670)
T KOG0239|consen 303 RKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDK----LEPQSFKFDKVFGPLASQDDVF 378 (670)
T ss_pred HHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCC----CccccceeeeecCCcccHHHHH
Confidence 35567788899999999999999999977655555555543 366666543321 1234699999999999999999
Q ss_pred HhhhhhhHHHhhcCCCcceeecccCCCCCccccCC-------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeee
Q 004530 272 RVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP-------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLF 344 (746)
Q Consensus 272 ~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G-------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~ 344 (746)
.. +.|+|.++|+|||+||||||||||||||||.| ++||++..||..+..... ++.|.+.++|+|||||.|+
T Consensus 379 ~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~ 456 (670)
T KOG0239|consen 379 EE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIR 456 (670)
T ss_pred HH-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHH
Confidence 95 89999999999999999999999999999976 789999999999988655 8999999999999999999
Q ss_pred cccccc---ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccc
Q 004530 345 DLLGER---KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKES 421 (746)
Q Consensus 345 DLL~~~---~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~ 421 (746)
|||++. ..+.|+.+..+.++|.+++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+...
T Consensus 457 DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t-- 534 (670)
T KOG0239|consen 457 DLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT-- 534 (670)
T ss_pred HhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc--
Confidence 999876 478899999999999999999999999999999999999999999999999999999999997764322
Q ss_pred cccCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhh
Q 004530 422 FRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRD 501 (746)
Q Consensus 422 ~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqD 501 (746)
.....++|+|||||||||+.+++..+ .+.+|+.+||+||++||+||.||..++.||||||||||+||++
T Consensus 535 ----------~~~~~g~l~LVDLAGSER~~~s~~tG-~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~ 603 (670)
T KOG0239|consen 535 ----------GIRVTGVLNLVDLAGSERVSKSGVTG-ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQD 603 (670)
T ss_pred ----------ccccccceeEeecccCcccCcCCCch-hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHh
Confidence 25678999999999999987766554 5567999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcCc
Q 004530 502 SFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTKK 546 (746)
Q Consensus 502 sLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~ 546 (746)
+|||+++|+|+++|||...++.||+++|+||.|++.+..++..++
T Consensus 604 sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 604 SLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred hhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccc
Confidence 999999999999999999999999999999999999998886544
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=5.3e-68 Score=570.37 Aligned_cols=316 Identities=44% Similarity=0.652 Sum_probs=286.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeC-CeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHhh
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSD-NALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIF 283 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~-~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl 283 (746)
+|+|+||+||+...| ......++.+++ +.|++.+|... .....+.|.||+||+++++|++||+.++.|+|++++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~ 75 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVL 75 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 589999999999887 345567888888 77999887643 233568999999999999999999999999999999
Q ss_pred cCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccc---ccccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE---RKKLC 354 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~---~~~l~ 354 (746)
+|+|+||||||+|||||||||+| ++++++++||..+.........|.|.+||+|||+|+|+|||++ ...+.
T Consensus 76 ~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~ 155 (328)
T cd00106 76 EGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLS 155 (328)
T ss_pred CCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcE
Confidence 99999999999999999999987 9999999999999875443567999999999999999999998 67899
Q ss_pred ceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCe
Q 004530 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (746)
Q Consensus 355 Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~ 434 (746)
+++++.+++++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+....... ...
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~----------~~~ 225 (328)
T cd00106 156 LREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG----------RSI 225 (328)
T ss_pred EEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC----------ccE
Confidence 9999999999999999999999999999999999999999999999999999999999887532211 136
Q ss_pred EEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCC--CCccCCCCcchhhhhhccCCCcceEEE
Q 004530 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQ--IHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (746)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~--~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (746)
..|+|+||||||+|+..+.+ ..+....|+..||+||.+|++||.+|..++ .|||||+||||+||||+|+|+++|+||
T Consensus 226 ~~s~l~~VDLaGse~~~~~~-~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I 304 (328)
T cd00106 226 KSSKLNLVDLAGSERAKKTG-AEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMI 304 (328)
T ss_pred EEEEEEEEECCCCCcccccC-CchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEE
Confidence 78999999999999987654 455666799999999999999999999988 999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHHHhc
Q 004530 513 SCISPNVGSCEHTLNTLRYADRVK 536 (746)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak 536 (746)
+||+|...+++||++||+||+|+|
T Consensus 305 ~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 305 ANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4.7e-67 Score=565.22 Aligned_cols=322 Identities=43% Similarity=0.643 Sum_probs=289.1
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCC---eEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHH
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDN---ALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~---~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~ 281 (746)
+|+|+|||||+...|...+..+++.+.++ .+++..+.. ..+.+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN------RKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC------CCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 58999999999999988778888888776 577766532 234688999999999999999999999999999
Q ss_pred hhcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccc-ccccc
Q 004530 282 IFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGE-RKKLC 354 (746)
Q Consensus 282 vl~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~-~~~l~ 354 (746)
+++|+|+||||||+|||||||||+ |++++++++||..+.... ....|.|+|||+|||+|+++|||++ ++.+.
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~ 153 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKKLE 153 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCCcE
Confidence 999999999999999999999998 799999999999986532 3567999999999999999999986 45789
Q ss_pred ceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCe
Q 004530 355 MREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGK 434 (746)
Q Consensus 355 Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~ 434 (746)
+++++.+++++.|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+.... ......
T Consensus 154 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~----------~~~~~~ 223 (335)
T smart00129 154 IREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN----------SSSGSG 223 (335)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC----------CCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999875321 112357
Q ss_pred EEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC--CCCCccCCCCcchhhhhhccCCCcceEEE
Q 004530 435 VIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN--DQIHIPFRGSKLTEVLRDSFVGNSKTVMI 512 (746)
Q Consensus 435 ~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~--~~~hIPYRdSKLTrLLqDsLgGnskT~mI 512 (746)
..++|+||||||+||....+. .+.+++|+..||+||.+|++||.+|.+ +..|||||+||||+||+++|+|+++|+||
T Consensus 224 ~~s~l~~VDLaGse~~~~~~~-~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i 302 (335)
T smart00129 224 KASKLNLVDLAGSERASKTGA-EGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302 (335)
T ss_pred EEEEEEEEECCCCCccccccC-hhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEE
Confidence 789999999999999766553 345567999999999999999999998 57799999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHHHHHHHhcccccccCc
Q 004530 513 SCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544 (746)
Q Consensus 513 a~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~ 544 (746)
+||||...+++||++||+||+++++|++.|..
T Consensus 303 ~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 303 ANISPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred EEcCCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999999999999998853
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-68 Score=574.73 Aligned_cols=318 Identities=41% Similarity=0.615 Sum_probs=276.2
Q ss_pred EeCCCCchhhccCCCcEEEEeCCeEEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcce
Q 004530 211 RKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATC 290 (746)
Q Consensus 211 RVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tI 290 (746)
||||++..|...+...++.+.+... .................|.||+||+++++|++||+.++.|+|+.+|+|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDS--NQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTET--EEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCcc--ccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 9999999999888888777654210 00111112233445789999999999999999999999999999999999999
Q ss_pred eecccCCCCCccccCC--------CchhHHHHHHHHhcccccc-ccceeeeeeeEEeeCCeeecccccc-----ccccce
Q 004530 291 FAYGQTGSGKTFTMQP--------LPLRAAEDLVRLLHQPVYR-NQRFKLWLSYFEIYGGKLFDLLGER-----KKLCMR 356 (746)
Q Consensus 291 fAYGQTGSGKTyTM~G--------l~~ra~~~LF~~i~~~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~-----~~l~Ir 356 (746)
||||+|||||||||+| ++++++++||..+...... ...|.|+|||+|||+|+|+|||++. +.+.++
T Consensus 79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 9999999999999987 6899999999999864332 3579999999999999999999987 469999
Q ss_pred ecCCCc-EEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeE
Q 004530 357 EDGRQQ-VCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKV 435 (746)
Q Consensus 357 ed~~~~-v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~ 435 (746)
+++..+ ++|.|++++.|.+++|++.+|..|.++|.+..|.+|..|||||+||+|+|.+....... ......
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~--------~~~~~~ 230 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSD--------DEESVK 230 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTT--------EEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccc--------ccccee
Confidence 999876 99999999999999999999999999999999999999999999999999987643221 001257
Q ss_pred EEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC--CCCccCCCCcchhhhhhccCCCcceEEEE
Q 004530 436 IGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND--QIHIPFRGSKLTEVLRDSFVGNSKTVMIS 513 (746)
Q Consensus 436 ~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~--~~hIPYRdSKLTrLLqDsLgGnskT~mIa 513 (746)
.|+|+||||||+||..+....++.+.+|+..||+||.+|++||.+|..+ ..|||||+||||+||||+|+|+|+|+||+
T Consensus 231 ~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~ 310 (335)
T PF00225_consen 231 HSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIV 310 (335)
T ss_dssp EEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEE
T ss_pred ecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEE
Confidence 8999999999999987776655677789999999999999999999998 99999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHHHHHHHhccc
Q 004530 514 CISPNVGSCEHTLNTLRYADRVKSL 538 (746)
Q Consensus 514 ~VSPs~~~~eETLsTLrfA~Rak~I 538 (746)
||+|...+++||++||+||+++|+|
T Consensus 311 ~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 311 CVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999986
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-61 Score=539.06 Aligned_cols=331 Identities=29% Similarity=0.506 Sum_probs=281.3
Q ss_pred cCCCCCeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCcccccc---ccccceEEEeeeeeCCCCChHHHHHhhhh
Q 004530 200 ENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKLKVDLT---AYVEKHEFCFDAVLDERVTNDEVYRVTVE 276 (746)
Q Consensus 200 ~~~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~~~~~~---~~~~~~~F~FD~VFd~~asQ~eVy~~~v~ 276 (746)
.+....|.||||+||+... .....++..+++.++.+..|.-..... .....+.|.|.+||+|+++|.+||+.++.
T Consensus 27 ~~~~d~v~v~~rvrP~~~~--~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSDA--SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhhcchheeEeecCCCCC--ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 3445678999999999852 223444555566668777776433222 22346789999999999999999999999
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccCC------CchhHHHHHHHHhccccc--------------------------
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQP------LPLRAAEDLVRLLHQPVY-------------------------- 324 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G------l~~ra~~~LF~~i~~~~~-------------------------- 324 (746)
|+|.+++.|.|..+|+||.|||||||||+| |.||+++-||..|.....
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975 889999999988775211
Q ss_pred -------------------------------------cccceeeeeeeEEeeCCeeecccccc------cc-ccceecCC
Q 004530 325 -------------------------------------RNQRFKLWLSYFEIYGGKLFDLLGER------KK-LCMREDGR 360 (746)
Q Consensus 325 -------------------------------------~~~~f~V~vS~lEIYnE~V~DLL~~~------~~-l~Ired~~ 360 (746)
.+..|.|||||+|||||-|||||.+. .. ..+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 11248999999999999999999753 22 56789999
Q ss_pred CcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEEEEEE
Q 004530 361 QQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKIS 440 (746)
Q Consensus 361 ~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~skL~ 440 (746)
+.++|.|+++|.|++.+|++++|+.|.++|+.++|..|..|||||+||+|.+-+.... ........|.|.
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~----------~~s~~i~vSqls 334 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS----------QDSNQITVSQLS 334 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc----------cccCceeEEeee
Confidence 9999999999999999999999999999999999999999999999999999876432 123367789999
Q ss_pred EEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCC-----CCCccCCCCcchhhhhhccCCCcceEEEEEe
Q 004530 441 FIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDND-----QIHIPFRGSKLTEVLRDSFVGNSKTVMISCI 515 (746)
Q Consensus 441 fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~-----~~hIPYRdSKLTrLLqDsLgGnskT~mIa~V 515 (746)
|||||||||..+++.. +.+++|+.+||.||++||.||.+|+.+ +.+|||||||||++++.+|.|..+++||+||
T Consensus 335 LvDLAGSERt~rtq~s-G~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~v 413 (809)
T KOG0247|consen 335 LVDLAGSERTNRTQNS-GERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCV 413 (809)
T ss_pred eeecccchhcccccch-hHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEec
Confidence 9999999997666554 456679999999999999999999763 4689999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcccccccC
Q 004530 516 SPNVGSCEHTLNTLRYADRVKSLSKSGN 543 (746)
Q Consensus 516 SPs~~~~eETLsTLrfA~Rak~I~~~~~ 543 (746)
+|-..+|+|+|+.|+||.-++.|.....
T Consensus 414 np~~e~YdEnl~vlkFaeiaq~v~v~~~ 441 (809)
T KOG0247|consen 414 NPKAEDYDENLNVLKFAEIAQEVEVARP 441 (809)
T ss_pred CCchhhHHHHHHHHHHHHhcccccccCc
Confidence 9999999999999999999999876543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-60 Score=548.57 Aligned_cols=309 Identities=37% Similarity=0.553 Sum_probs=273.7
Q ss_pred eCCCCchhhccCCCcEEEEeCCe--EEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcc
Q 004530 212 KRPLNKKELSRKEEDIVTVSDNA--LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKAT 289 (746)
Q Consensus 212 VRPl~~~E~~~~~~~iv~v~~~~--vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~t 289 (746)
|||+...|...+...|+.+..++ |++. .+..|+||+||+....|.++|+.+|.|+++.+|+|||+|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig------------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG------------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec------------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 69999999888877777655543 3332 356899999999999999999999999999999999999
Q ss_pred eeecccCCCCCccccC----------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccc---cccce
Q 004530 290 CFAYGQTGSGKTFTMQ----------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK---KLCMR 356 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~----------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~---~l~Ir 356 (746)
++|||||||||||||. |++||++..+|..+..... ..|.|.|||+|||++.|+|||.+.+ .+.++
T Consensus 69 vlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~--~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~ 146 (913)
T KOG0244|consen 69 VLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES--FVFRITVSFVELYNEEVLDLLKPSRLKANIKLR 146 (913)
T ss_pred eeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc--cceeeeeeeeeccchhhhhhcChhhhhhceecc
Confidence 9999999999999993 8999999999999976332 6699999999999999999998543 46677
Q ss_pred ecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEE
Q 004530 357 EDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVI 436 (746)
Q Consensus 357 ed~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~ 436 (746)
+ +++++.+.|++++.|.+..++...|..|...|++++|.||.+|||||+||++.+++...... ....+
T Consensus 147 e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-----------~s~~~ 214 (913)
T KOG0244|consen 147 E-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-----------RSSFC 214 (913)
T ss_pred c-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------cchhh
Confidence 7 78889999999999999999999999999999999999999999999999999877432111 13456
Q ss_pred EEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCC--CccCCCCcchhhhhhccCCCcceEEEEE
Q 004530 437 GKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQI--HIPFRGSKLTEVLRDSFVGNSKTVMISC 514 (746)
Q Consensus 437 skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~--hIPYRdSKLTrLLqDsLgGnskT~mIa~ 514 (746)
+||+|||||||||.+++.+.+ .+.+|+++||.+|++||+||+||...+. |||||+|||||||||+||||+.|+||+|
T Consensus 215 sKlhlVDLAGSER~kkT~a~g-drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaC 293 (913)
T KOG0244|consen 215 SKLHLVDLAGSERVKKTKAEG-DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIAC 293 (913)
T ss_pred hhhheeeccccccccccccch-hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeee
Confidence 899999999999988876655 5567999999999999999999987665 9999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHhcccccccCcCcc
Q 004530 515 ISPNVGSCEHTLNTLRYADRVKSLSKSGNTKKD 547 (746)
Q Consensus 515 VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~~~ 547 (746)
|||...+++||++||+||.|+++|++.|.++.+
T Consensus 294 iSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d 326 (913)
T KOG0244|consen 294 ISPADSNAQETLNTLRYADRAKQIKNKPVVNQD 326 (913)
T ss_pred cChhhhhhhhHHHHHHHhhHHHHhccccccccc
Confidence 999999999999999999999999999877653
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-56 Score=513.49 Aligned_cols=317 Identities=38% Similarity=0.588 Sum_probs=276.1
Q ss_pred ccCCCCCeEEEEEeCCCCchhhccCCCcEEEEeCCe-EEEeCCCccccccccccceEEEeeeeeCCCCChHHHHHhhhhh
Q 004530 199 RENNVAKIRVVVRKRPLNKKELSRKEEDIVTVSDNA-LTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEP 277 (746)
Q Consensus 199 ~~~~~~~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~-vtv~~p~~~~~~~~~~~~~~F~FD~VFd~~asQ~eVy~~~v~p 277 (746)
......+++++++..|-...+ .++...+.. +.+... ....|.||+||++.++|++||+.++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------~~~~~~fdkvf~~~~~q~~v~e~~~~~ 80 (568)
T COG5059 17 NEKSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS----------KEGTYAFDKVFGPSATQEDVYEETIKP 80 (568)
T ss_pred ceeeecCceEEEeecCCCcch------heeecccccccccccc----------cceEEEEeeccCCCCcHHHHHHHhhhh
Confidence 445567889999999954332 222222221 222111 156899999999999999999999999
Q ss_pred hHHHhhcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCeeeccccccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERK 351 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~ 351 (746)
+++.++.||||||||||||||||||||. |++|+.+..||+.+..... +..|.|.+||+|||||+++|||.+..
T Consensus 81 l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~ 159 (568)
T COG5059 81 LIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNE 159 (568)
T ss_pred HHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcc
Confidence 9999999999999999999999999996 4889999999999987443 67899999999999999999998876
Q ss_pred c-ccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCC
Q 004530 352 K-LCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNE 430 (746)
Q Consensus 352 ~-l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~ 430 (746)
. +.++++...++.|.|++++.|.+++|++.+|++|..+|+++.|.+|..|||||+||++.+.+.......
T Consensus 160 ~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~--------- 230 (568)
T COG5059 160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT--------- 230 (568)
T ss_pred ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc---------
Confidence 5 789999999999999999999999999999999999999999999999999999999999887643321
Q ss_pred CCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhC--CCCCccCCCCcchhhhhhccCCCcc
Q 004530 431 SRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN--DQIHIPFRGSKLTEVLRDSFVGNSK 508 (746)
Q Consensus 431 ~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~--~~~hIPYRdSKLTrLLqDsLgGnsk 508 (746)
...++|+||||||||+...+ .....+++|+..||+||++||+||.+|.. +..|||||+|||||||+++|||+|+
T Consensus 231 ---~~~~~l~lvDLagSE~~~~~-~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~ 306 (568)
T COG5059 231 ---SETSKLSLVDLAGSERAART-GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCN 306 (568)
T ss_pred ---eecceEEEEeeccccccchh-hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCcc
Confidence 22379999999999998777 44456677999999999999999999997 8899999999999999999999999
Q ss_pred eEEEEEeCCCCCChHHHHHHHHHHHHhcccccccCcC
Q 004530 509 TVMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNTK 545 (746)
Q Consensus 509 T~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~~ 545 (746)
|+|||||+|...++++|.+||+||.|+++|++.+..+
T Consensus 307 ~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~ 343 (568)
T COG5059 307 TRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVN 343 (568)
T ss_pred EEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccccc
Confidence 9999999999999999999999999999998877554
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.3e-46 Score=370.57 Aligned_cols=173 Identities=42% Similarity=0.650 Sum_probs=155.6
Q ss_pred HHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC------CCchhHHHHHHHHhccccccccceeeeeeeEEeeCCee
Q 004530 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ------PLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKL 343 (746)
Q Consensus 270 Vy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~------Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~V 343 (746)
||+.++ |+|+.+++|+|+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999998 566776655
Q ss_pred eccccccccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccc
Q 004530 344 FDLLGERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFR 423 (746)
Q Consensus 344 ~DLL~~~~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~ 423 (746)
++++++.|.++|+++.|.+|..|||||+||+|+|.+......
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~--- 99 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS--- 99 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC---
Confidence 889999999999999999999999999999999988753321
Q ss_pred cCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhcc
Q 004530 424 RNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSF 503 (746)
Q Consensus 424 ~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsL 503 (746)
.......++|+|||||||||....... +.+.+|+..||+||.+|++||.+|.+++.|||||+||||+||||+|
T Consensus 100 ------~~~~~~~s~l~lVDLAGsE~~~~~~~~-~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L 172 (186)
T cd01363 100 ------ATEQPKVGKINLVDLAGSERIDFSGAE-GSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSL 172 (186)
T ss_pred ------CccceeeeeEEEEEccccccccccCCc-hhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhc
Confidence 122567899999999999998666544 4556799999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCC
Q 004530 504 VGNSKTVMISCISP 517 (746)
Q Consensus 504 gGnskT~mIa~VSP 517 (746)
+|||+|+||+||||
T Consensus 173 ~g~~~t~~i~~vsP 186 (186)
T cd01363 173 GGNSRTLMVACISP 186 (186)
T ss_pred CCCCeEEEEEEeCc
Confidence 99999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.80 E-value=1.7e-07 Score=109.22 Aligned_cols=209 Identities=24% Similarity=0.209 Sum_probs=131.8
Q ss_pred cceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC----CchhHHHHHHHHhccccccc
Q 004530 251 EKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP----LPLRAAEDLVRLLHQPVYRN 326 (746)
Q Consensus 251 ~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G----l~~ra~~~LF~~i~~~~~~~ 326 (746)
....|.||.+|.....+..++.. ...+++.-++| +++|+++++++++||.- +....+..++........+.
T Consensus 351 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 425 (568)
T COG5059 351 EIEEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEG 425 (568)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhH
Confidence 45679999999999999888884 56677777777 99999999999999953 33344455666665555556
Q ss_pred cceeeeeeeEEeeCCeeecccccc---ccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcCCcccCCCCCCCCC
Q 004530 327 QRFKLWLSYFEIYGGKLFDLLGER---KKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSR 403 (746)
Q Consensus 327 ~~f~V~vS~lEIYnE~V~DLL~~~---~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSR 403 (746)
+.+...+-+.++|-..+.+++... ..-.+.....-+.....+.........+.... ..+...+....+..|..++|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~ 504 (568)
T COG5059 426 WKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVES-EKASKLRSSASTKLNLRSSR 504 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhh-hhhccchhhcccchhhhhcc
Confidence 667777777777722222222211 00000000000000000001111111112222 25677888999999999999
Q ss_pred CeEEEEEEEEEeeccccccccCCCCCCCCCeEEEEEEEEECCCCCCCCCCCCcchhchHHHHHhhHHHHHHHHHHHHHh
Q 004530 404 SHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALD 482 (746)
Q Consensus 404 SHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~skL~fVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~VI~AL~ 482 (746)
+|.+|+.+......... ... ++.|||||+||. .... .+.++.+...+|++|..++.++.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~-------------~~~--~n~~~~~~~e~~-~s~~-~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 505 SHSKFRDHLNGSNSSTK-------------ELS--LNQVDLAGSERK-VSQS-VGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cchhhhhcccchhhhhH-------------HHH--hhhhhccccccc-hhhh-hHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999887644332111 111 799999999996 4433 34556799999999999999998763
No 31
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=96.21 E-value=0.0028 Score=52.88 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=49.1
Q ss_pred HHHHHHHHhCccccccccccCCCcc-cccchhhh---ccccccchHHHHHHHHHHHhh
Q 004530 39 VMARWLQSAGLQHLASPLASNGIDH-RLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (746)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (746)
=|++||.+.|+.|+++.|...||+. ..|+.|.. ...|+.+...++||.+.|+.|
T Consensus 8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~L 65 (66)
T PF07647_consen 8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQEL 65 (66)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4789999999999999999999999 99988876 578999999999999999876
No 32
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=94.35 E-value=0.023 Score=46.10 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=47.4
Q ss_pred HHHHHHHHhCccccccccccCCCcccccchhhh---ccccccchHHHHHHHHHHHhh
Q 004530 39 VMARWLQSAGLQHLASPLASNGIDHRLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (746)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (746)
-++.||++.|+.|++..|...++|...|+.|.. ...|+.....++||.+-|+.|
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 478899999999999999999999888888766 466999999999999988765
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.67 E-value=0.069 Score=61.66 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=58.7
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc-------------hhHHHHHHHHhc
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP-------------LRAAEDLVRLLH 320 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~-------------~ra~~~LF~~i~ 320 (746)
.|..-.-|.|.-+|-+- +..||+.+-+|..-- .-.|.|||||||||--++ --.+..|+..+.
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 57777778888888654 445666666665443 346999999999995322 134566777776
Q ss_pred cccccccceeeeeeeEEeeCCee
Q 004530 321 QPVYRNQRFKLWLSYFEIYGGKL 343 (746)
Q Consensus 321 ~~~~~~~~f~V~vS~lEIYnE~V 343 (746)
+ .+.+..+..+||||.-|.-.-
T Consensus 79 ~-fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 E-FFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred H-hCcCcceEEEeeeccccCccc
Confidence 6 456667888999999998553
No 34
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=93.10 E-value=0.053 Score=44.41 Aligned_cols=56 Identities=30% Similarity=0.564 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCccccccccccCCCcccccchhh----hccccccchHHHHHHHHHHHhhc
Q 004530 38 AVMARWLQSAGLQHLASPLASNGIDHRLLPNLL----MQGYGAQSAEEKQRLFKLMRNLN 93 (746)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 93 (746)
.-+..||+..|+.|+...|...+|+...|+.+. +...|+.+...|+||.+-|+.|-
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK 66 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 347789999999999999999999997777776 35789999999999999887763
No 35
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=92.10 E-value=0.11 Score=43.02 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCccccccccccCCCcccccchhhh---ccccccchHHHHHHHHHHHhh
Q 004530 38 AVMARWLQSAGLQHLASPLASNGIDHRLLPNLLM---QGYGAQSAEEKQRLFKLMRNL 92 (746)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (746)
.-++.||++.|+++++..|..--||.+.|..|.. ...|+-.+-.+.||++.|+.|
T Consensus 6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~L 63 (64)
T PF00536_consen 6 EDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKL 63 (64)
T ss_dssp HHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999777789888888877 447999999999999999875
No 36
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.04 E-value=0.057 Score=55.96 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=30.3
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
.|+||.-+-. ..++.+|.. +..+.+.--..+| .+|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 5889886643 346777763 4444443111223 478999999999998743
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=88.63 E-value=0.21 Score=51.96 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=33.2
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
..++||..+... ...-+. .+...+-..++-.++-||++|+||||.+..+.
T Consensus 11 ~~~~fd~f~~~~-~~~~~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 11 DDETLDNFYADN-NLLLLD-----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CcccccccccCC-hHHHHH-----HHHHHhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 468899988654 222222 22233335678789999999999999985443
No 38
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.50 E-value=0.21 Score=54.46 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=27.6
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
+.+++..+++-.++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4667778889999999999999999999993
No 39
>PRK06526 transposase; Provisional
Probab=86.57 E-value=0.31 Score=51.88 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.0
Q ss_pred eCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCch
Q 004530 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309 (746)
Q Consensus 261 Fd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ 309 (746)
+.+...+..+..-.....|+ .+.| |+.||++|+||||.+.++..
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHH
Confidence 44444555555433344443 3444 79999999999999966543
No 40
>PRK12377 putative replication protein; Provisional
Probab=86.43 E-value=0.36 Score=51.31 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=36.0
Q ss_pred EEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc
Q 004530 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 255 F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
.+||........|..++. .+..++..+..+. ..++-||++|+||||.+..+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHH
Confidence 356665444456766776 4666777766543 568899999999999985433
No 41
>PRK08116 hypothetical protein; Validated
Probab=85.12 E-value=0.4 Score=51.36 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=36.1
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhc--CCCcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~--G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..++||.-. ....+...|. .+...++.+.+ ..+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 356777644 3455666676 46667776654 3455699999999999998853
No 42
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.43 E-value=0.34 Score=57.61 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=35.1
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
..|+||..+-.. .+..+|. .+..+++..-..+|. ||-||.+|+||||.+..+.
T Consensus 283 ~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AIa 335 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAIG 335 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHHH
Confidence 568998755433 3555664 344455443345675 8999999999999985433
No 43
>PRK06620 hypothetical protein; Validated
Probab=82.27 E-value=0.5 Score=48.90 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=33.5
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCC---cceeecccCCCCCccccC
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTK---ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N---~tIfAYGQTGSGKTyTM~ 305 (746)
...|+||..+... ++...|.. +..+.+. -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 3568898876654 45667774 3333321 1444 359999999999999985
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.88 E-value=0.65 Score=49.29 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=33.2
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCC
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl 307 (746)
..+||...-....|..++.. +...++.+..+. ..++-||.+|+||||.+..+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ai 119 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAI 119 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHH
Confidence 34666543334456667664 445555544432 37899999999999998543
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.73 E-value=0.77 Score=47.99 Aligned_cols=48 Identities=13% Similarity=0.351 Sum_probs=31.6
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..|+||.-+.. .+..++.. +..++. ......++-||++|+||||.+..
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 45778865544 56666653 333332 22335799999999999999854
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.58 E-value=0.59 Score=53.55 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=33.3
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..|+||.-+-. ..+...|.. +..+.+. -..+|. +|-||++|+||||.|..
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 46899886643 456666764 3333332 112564 99999999999999854
No 47
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.15 E-value=0.69 Score=53.61 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.0
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
...+..+++.-++-|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3445677888999999999999999999953
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.70 E-value=2 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=18.6
Q ss_pred HHhhcC-CCcceeecccCCCCCcccc
Q 004530 280 PTIFQR-TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G-~N~tIfAYGQTGSGKTyTM 304 (746)
..++.| ....++.||.||||||.|+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334444 4444999999999999887
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.64 E-value=0.93 Score=41.09 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=19.1
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334557889999999999876
No 50
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.53 E-value=1 Score=49.42 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=27.5
Q ss_pred eeeeCCCCChHHHHHhhhhhhHHHhhc-CCCcceeecccCCCCCcccc
Q 004530 258 DAVLDERVTNDEVYRVTVEPIIPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 258 D~VFd~~asQ~eVy~~~v~pLV~~vl~-G~N~tIfAYGQTGSGKTyTM 304 (746)
|++.+.-...++-++.. ...+..++. +...+++-||++|+|||+++
T Consensus 11 ~~~p~~l~gRe~e~~~l-~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEEL-AKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCcHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33433333344444432 223344444 45568999999999999987
No 51
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.48 E-value=0.69 Score=52.04 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=31.5
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..|+||...- ...+...|.. +..+...--..+| .++-||++|+||||.+..
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 4688888432 2455656653 4444443111133 478899999999999843
No 52
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.36 E-value=0.8 Score=44.10 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=23.5
Q ss_pred hHHHHHhhhhhhHHHhhcC-CCcceeecccCCCCCccccCC
Q 004530 267 NDEVYRVTVEPIIPTIFQR-TKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 267 Q~eVy~~~v~pLV~~vl~G-~N~tIfAYGQTGSGKTyTM~G 306 (746)
|.++... +++.+-.. ....++..++||||||++|..
T Consensus 8 Q~~ai~~----i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIAR----IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHH----HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 5555544 33333333 456677778999999999964
No 53
>PRK05642 DNA replication initiation factor; Validated
Probab=79.95 E-value=1 Score=47.01 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=29.3
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhc---CC-CcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQ---RT-KATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~---G~-N~tIfAYGQTGSGKTyTM~G 306 (746)
..|+||.-+.. .+..++. .+....+ +. .-.++-||.+|+||||-+..
T Consensus 14 ~~~tfdnF~~~--~~~~a~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG--ANAAALG-----YVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC--ChHHHHH-----HHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 46889887743 2333333 2332222 22 24688999999999998854
No 54
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.72 E-value=0.72 Score=52.76 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=31.9
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..|+||.-.-. ..+...|.. +..+.+.--..+| .+|-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 46788874422 355556663 4444433212234 588899999999999854
No 55
>PRK08181 transposase; Validated
Probab=79.59 E-value=0.99 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=18.8
Q ss_pred cCCCcceeecccCCCCCccccCCCch
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQPLPL 309 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~Gl~~ 309 (746)
.+.| |+-||++|+||||-+.++..
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHH
Confidence 4554 89999999999999865443
No 56
>PRK09087 hypothetical protein; Validated
Probab=79.48 E-value=0.9 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=31.3
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
..|+||.-+... .+..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 457888877543 34557763 232222235568999999999999985
No 57
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.94 E-value=1.1 Score=49.49 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=27.4
Q ss_pred HHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc
Q 004530 268 DEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 268 ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
..+++ .+...|+.+-... -.|+-||++|+||||.+.++.
T Consensus 166 ~~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa 204 (329)
T PRK06835 166 EKILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIA 204 (329)
T ss_pred HHHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHH
Confidence 34554 3455777665544 669999999999999885433
No 58
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=77.56 E-value=1.5 Score=48.68 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.5
Q ss_pred HHHhhc-CCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~-G~N~tIfAYGQTGSGKTyTM 304 (746)
+...+. +....++-||++|+|||+++
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333443 45567899999999999987
No 59
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.28 E-value=1 Score=49.34 Aligned_cols=52 Identities=10% Similarity=0.184 Sum_probs=32.9
Q ss_pred EeeeeeCCCCChHHHHHhhhhhhHHHhhcC-CCcceeecccCCCCCccccCCCc
Q 004530 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQR-TKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 256 ~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G-~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
+||.+-.....+..++.. +...++....| ..-.++-||++|+||||.+.++.
T Consensus 125 tf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 125 SLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred cHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 444433223356667764 45566655543 23469999999999999986543
No 60
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=76.46 E-value=1.9 Score=52.02 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=54.1
Q ss_pred EEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCc-------------hhHHHHHHHHhcc
Q 004530 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP-------------LRAAEDLVRLLHQ 321 (746)
Q Consensus 255 F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~-------------~ra~~~LF~~i~~ 321 (746)
|....-|.|.-.|..-++. |++.+-+|...- ..+|.||||||+||-.++ ...+..|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4445567788889887775 455555564332 378999999999995421 2344556666654
Q ss_pred ccccccceeeeeeeEEeeCCee
Q 004530 322 PVYRNQRFKLWLSYFEIYGGKL 343 (746)
Q Consensus 322 ~~~~~~~f~V~vS~lEIYnE~V 343 (746)
. ..+..+...||||.-|.-..
T Consensus 77 f-~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 F-FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred h-CCCCeEEEEeeecccCCccc
Confidence 2 23344778899999998553
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.30 E-value=1.3 Score=50.92 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=31.5
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.|+||.-.-.. .++..|. .+..++..-=..+| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 48999866443 4566675 34444432101234 58999999999999984
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.68 E-value=1.7 Score=44.62 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
...|+||..+.. .+..++. .++.++.. ......++-||.+|+||||.+.
T Consensus 12 ~~~~~~d~f~~~--~~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAG--ENAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccC--CcHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 346889988732 2333443 34444331 2345679999999999999874
No 63
>PRK08727 hypothetical protein; Validated
Probab=74.88 E-value=1.1 Score=46.66 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.9
Q ss_pred cceeecccCCCCCccccCCC
Q 004530 288 ATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~Gl 307 (746)
-.|+-||++|+||||.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45999999999999988543
No 64
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=74.71 E-value=1.6 Score=44.40 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
..++||..... .+..+++. ++.++ .......|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45788876632 44555553 33332 24567789999999999999884
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.65 E-value=1.1 Score=40.10 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.6
Q ss_pred eeecccCCCCCccccCC
Q 004530 290 CFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~G 306 (746)
++.+|.||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999853
No 66
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=72.30 E-value=8.5 Score=40.86 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=33.9
Q ss_pred EecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEEEEEEEEEeeccccccccCCCCCCCCCeEEEEEEEEECCCCCC
Q 004530 372 EVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAIKKHIEVKESFRRNNDGNESRGKVIGKISFIDLAGSER 449 (746)
Q Consensus 372 ~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaIftI~V~q~~~~~~~~~~~~~g~~~~~~~~skL~fVDLAGSER 449 (746)
.+.+++++..++..+... ..+. + ..-|.-++.|.|.... .-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~-------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPH-------------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCC-------------------CCceEEEeCCCccc
Confidence 446888999888876542 1111 1 2235567777775432 23689999999965
No 67
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=71.67 E-value=1.7 Score=51.55 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=24.1
Q ss_pred hHHHhhcCCCcceeecccCCCCCccccCC
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM~G 306 (746)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566677889999999999999999843
No 68
>PF13245 AAA_19: Part of AAA domain
Probab=71.46 E-value=1.9 Score=37.61 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeecccCCCCCccccC
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
|...+. .+..++.-|..|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 34445558999999999983
No 69
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.34 E-value=1.4 Score=45.27 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCcchhhhhhccCCCcceEEEEEeCC
Q 004530 468 NKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISP 517 (746)
Q Consensus 468 NkSL~aLg~VI~AL~~~~~hIPYRdSKLTrLLqDsLgGnskT~mIa~VSP 517 (746)
.....++-..+..|.......+--...+...|.+.+..+.++++| -+|-
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i~Ii-DLs~ 212 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGKIVII-DLSG 212 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCCEEEE-ECCC
Confidence 344455555555555444333333345666666667655555554 4554
No 70
>PRK10436 hypothetical protein; Provisional
Probab=71.30 E-value=1.8 Score=50.02 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.6
Q ss_pred HHHhhcCCCcceeecccCCCCCccccC
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
+..++..-++.|+..|+||||||.||.
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445566778899999999999999994
No 71
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.04 E-value=1.9 Score=45.90 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=33.8
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCch
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ 309 (746)
.|.|..+-.....+..+|.. +..++..+- ....++-||++|+||||-..++..
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~ 127 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGN 127 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHH
Confidence 34443333344567777774 556665555 344477899999999998865443
No 72
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=71.00 E-value=1.9 Score=50.15 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.9
Q ss_pred hHHHhhcCCCcceeecccCCCCCccccC
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.+..++..-.+.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3455667777889999999999999994
No 73
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.54 E-value=6.2 Score=44.35 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCC-ccccccc----cccceEEEeeeeeCCCCChHHHHHhhhhhhH
Q 004530 205 KIRVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPK-LKVDLTA----YVEKHEFCFDAVLDERVTNDEVYRVTVEPII 279 (746)
Q Consensus 205 ~IrV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~-~~~~~~~----~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV 279 (746)
.-+.+|++.+....+.. .+.+.|.++.++.+|...- ...+..- ..+.-.-+|+.|=+-+..=++|.+.+.-||.
T Consensus 94 g~~~vV~i~~~vd~~~L-~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 94 GPKFVVNILSFVDRDLL-EPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCeEEEeccCCcCHHHc-CCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 33678888888776643 3345566665443332211 1111110 0011223444454444444667777767776
Q ss_pred H-Hhhc--CCC--cceeecccCCCCCcccc-----------------------CCCchhHHHHHHHHhccc
Q 004530 280 P-TIFQ--RTK--ATCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQP 322 (746)
Q Consensus 280 ~-~vl~--G~N--~tIfAYGQTGSGKTyTM-----------------------~Gl~~ra~~~LF~~i~~~ 322 (746)
+ ..|+ |.. --|+-||+.|+|||-.- .|-.+|.+++||....++
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 5 4444 443 45899999999999653 155689999999987663
No 74
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=70.47 E-value=1.9 Score=49.19 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
...|+||.-... .++.-.|.. ...|...-.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 346899885544 345555542 222222222334468999999999999995
No 75
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=69.01 E-value=2.4 Score=45.21 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=68.5
Q ss_pred EeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcc-eeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeee
Q 004530 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKAT-CFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLS 334 (746)
Q Consensus 256 ~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~t-IfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS 334 (746)
.+|...+-+...+.+.+. ...+++|..+- ++-||..|+|||.++.. ++..... + -+-
T Consensus 25 ~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVka--------ll~~y~~---~------GLR 82 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKA--------LLNEYAD---Q------GLR 82 (249)
T ss_pred CHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHH--------HHHHHhh---c------Cce
Confidence 344555544444444443 36777887543 77799999999988743 2222222 1 167
Q ss_pred eEEeeCCeeeccccccccccceecC-CCcEEEeccEE-EEecCHHHHHHHHHHHHhcCCcccCCCCCCCCCCeEE
Q 004530 335 YFEIYGGKLFDLLGERKKLCMREDG-RQQVCIVGLQE-FEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAI 407 (746)
Q Consensus 335 ~lEIYnE~V~DLL~~~~~l~Ired~-~~~v~V~GLte-v~V~S~eE~~~lL~~G~~~R~~~sT~~N~~SSRSHaI 407 (746)
.+||..+.+.||-.--.. ++..+ +--+++..|+- ..=.+...+..+|+-|...| ....-+.++|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l~~~--l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDL--LRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHHHHH--HhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 789988877666421000 01111 11123444441 11223566777777776554 3344455677777765
No 76
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=68.95 E-value=2 Score=41.10 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=18.6
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
++.+++|.+ ++..|+||+|||..+
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 344556666 788999999999886
No 77
>PF12846 AAA_10: AAA-like domain
Probab=68.84 E-value=1.5 Score=45.92 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.3
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999985
No 78
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=68.79 E-value=2.2 Score=43.43 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.1
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|..++...+-.++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 344555566556667899999999998
No 79
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.59 E-value=1.6 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.4
Q ss_pred CcceeecccCCCCCccccCCC
Q 004530 287 KATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~Gl 307 (746)
.-.++-+|++|+||||...++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHH
Confidence 345999999999999987543
No 80
>PRK06921 hypothetical protein; Provisional
Probab=68.34 E-value=2.6 Score=45.16 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=24.8
Q ss_pred HHHHhhhhhhHHHhhc---CCCcceeecccCCCCCccccCCC
Q 004530 269 EVYRVTVEPIIPTIFQ---RTKATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 269 eVy~~~v~pLV~~vl~---G~N~tIfAYGQTGSGKTyTM~Gl 307 (746)
.++. .+...++.+-+ +..-.|+-||++|+||||.+..+
T Consensus 97 ~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 97 DAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred HHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHH
Confidence 3444 34455555432 23456899999999999998543
No 81
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.10 E-value=1.5 Score=40.42 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=13.2
Q ss_pred CcceeecccCCCCCcccc
Q 004530 287 KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM 304 (746)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999887
No 82
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=67.77 E-value=2.4 Score=47.01 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=20.3
Q ss_pred HHHhhcCCCcceeecccCCCCCccccC
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
+..++.-....|+-.|+||||||.||.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 334444445779999999999999994
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=67.60 E-value=1.9 Score=38.49 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.4
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999883
No 84
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.40 E-value=2.1 Score=42.73 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=21.4
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
++.|...+-.|.+.+++-||+.|+|||..|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444567889999999999999877
No 85
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=66.62 E-value=2.7 Score=47.36 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.0
Q ss_pred CCcceeecccCCCCCccccC
Q 004530 286 TKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 286 ~N~tIfAYGQTGSGKTyTM~ 305 (746)
.++.|+..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45578889999999999994
No 86
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.57 E-value=2 Score=45.45 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.5
Q ss_pred CcceeecccCCCCCcccc
Q 004530 287 KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM 304 (746)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 556777899999999998
No 87
>PRK09183 transposase/IS protein; Provisional
Probab=65.45 E-value=3.1 Score=44.37 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.0
Q ss_pred cCCCcceeecccCCCCCccccCCC
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~Gl 307 (746)
.|.| |+-+|++|+||||.+..+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHHH
Confidence 4544 667999999999988544
No 88
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=65.31 E-value=2.2 Score=43.38 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.8
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
+.|+-.|+||||||.+|.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568889999999999984
No 89
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.28 E-value=3.8 Score=44.48 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=25.8
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
+.+++..+.--..+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566677767788899999999999999993
No 90
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.92 E-value=3.1 Score=44.53 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred HHHhhcCCCcceeecccCCCCCccccC
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 345555556678889999999999994
No 91
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=64.72 E-value=3 Score=46.71 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.3
Q ss_pred CCCcceeecccCCCCCccccC
Q 004530 285 RTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM~ 305 (746)
-....|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999994
No 92
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=63.92 E-value=4.1 Score=46.99 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=33.3
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHh--hcC--CCcceeecccCCCCCccccCC
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTI--FQR--TKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v--l~G--~N~tIfAYGQTGSGKTyTM~G 306 (746)
...|+||.-.-. ..++..|. .+..+.... ..| +| .+|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 356899986643 35666665 344444322 123 34 478899999999999854
No 93
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.82 E-value=2.9 Score=46.07 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=19.8
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3455555553 456666999999998874
No 94
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.70 E-value=9 Score=41.35 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=65.4
Q ss_pred EEEEEeCCCCchhhccCCCcEEEEe--CCe-EEEeCCCcccccc--ccccceEEEeeeeeCCCCChHHHHHhhhhhhHHH
Q 004530 207 RVVVRKRPLNKKELSRKEEDIVTVS--DNA-LTVHEPKLKVDLT--AYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPT 281 (746)
Q Consensus 207 rV~VRVRPl~~~E~~~~~~~iv~v~--~~~-vtv~~p~~~~~~~--~~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~ 281 (746)
.-|||+--...+|....... |..+ .+. |.+..|.....+. ...++-.-++..|=+-+..-++|-+.+--||...
T Consensus 100 ny~vrilstidrellkps~s-valhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~ 178 (408)
T KOG0727|consen 100 NYYVRILSTIDRELLKPSAS-VALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHA 178 (408)
T ss_pred ceEEeehhhhhHHHcCCccc-hhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHH
Confidence 57888888777776543322 2221 122 3333333221111 0112223344555555665666776666666654
Q ss_pred hhc---CCC--cceeecccCCCCCcccc-----------------------CCCchhHHHHHHHHhcc
Q 004530 282 IFQ---RTK--ATCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 282 vl~---G~N--~tIfAYGQTGSGKTyTM-----------------------~Gl~~ra~~~LF~~i~~ 321 (746)
-+- |.+ -.|+.||+.|+|||-.. .|-.||.++++|++..+
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 331 333 45899999999999543 15679999999998876
No 95
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.54 E-value=4.1 Score=45.47 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=27.6
Q ss_pred CChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 265 asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..|+.+|+.++..+. ......+|.-|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468999997655443 345567888999999999987
No 96
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.36 E-value=4.4 Score=46.03 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=33.1
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHH-HhhcC----CCcceeecccCCCCCcccc
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQR----TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~-~vl~G----~N~tIfAYGQTGSGKTyTM 304 (746)
..++|+.|-+.+..-+++-+.+..|+.. .++.. ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3466777777654444555544445543 34432 2356889999999999877
No 97
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=62.22 E-value=3.3 Score=46.75 Aligned_cols=36 Identities=33% Similarity=0.733 Sum_probs=26.4
Q ss_pred eeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeeeeEEeeC
Q 004530 290 CFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYG 340 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYn 340 (746)
|+-||.+||||||++ +.+|+..+. -.||+.++|-|.
T Consensus 33 ~~iyG~sgTGKT~~~--------r~~l~~~n~-------~~vw~n~~ecft 68 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV--------RQLLRKLNL-------ENVWLNCVECFT 68 (438)
T ss_pred EEEeccCCCchhHHH--------HHHHhhcCC-------cceeeehHHhcc
Confidence 588999999999987 445555422 257888888775
No 98
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=62.11 E-value=2.9 Score=45.55 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567889999999999983
No 99
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=61.30 E-value=25 Score=42.81 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.9
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 689999999999999999987
No 100
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=60.61 E-value=5 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=17.8
Q ss_pred hhcCCCcceeecccCCCCCcccc
Q 004530 282 IFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 282 vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+......++-+|+.|+|||+++
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH
Confidence 34444557888999999999877
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.14 E-value=7.2 Score=43.34 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=15.0
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
..|+-||++|+|||+++
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999887
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=59.95 E-value=6 Score=49.30 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.1
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
|-+.+||-||++|+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567889999999999988
No 103
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.28 E-value=5.1 Score=38.23 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=14.5
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..++..|.+|||||.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 25 RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CcEEEECCCCCchhHHHH
Confidence 456777899999999873
No 104
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=58.25 E-value=32 Score=41.84 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=25.6
Q ss_pred HHHhhhhhhHHHhh-cCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~N~tIfAYGQTGSGKTyTM 304 (746)
||. ++......++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifa-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFA-IADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHH-HHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 665 3333344444 589999999999999999887
No 105
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.92 E-value=3.1 Score=40.35 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=15.1
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+++....+...+++-+|..|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 334334566788999999999999886
No 106
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=57.77 E-value=11 Score=42.82 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhc----CCCcceeecccCCCCCcccc
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQ----RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~----G~N~tIfAYGQTGSGKTyTM 304 (746)
...+.||.+.+.-.--..+.+..+..++..++. -.---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 456788888776655566777777677777664 22345777999999999874
No 107
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=57.46 E-value=35 Score=41.94 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.9
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 689999999999999999987
No 108
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=57.29 E-value=31 Score=42.06 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.9
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 689999999999999999987
No 109
>PF13479 AAA_24: AAA domain
Probab=56.91 E-value=4 Score=41.98 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.1
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998773
No 110
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=56.54 E-value=6.2 Score=42.58 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=25.6
Q ss_pred EeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 256 ~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.||.+.+ |.++.+. +..++ -.+....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~-L~~~~---~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER-LSRAV---DSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH-HHHHH---hCCCCceEEEECCCCCCHHHHHH
Confidence 4666654 4444442 22222 23443458889999999999883
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=56.04 E-value=3.5 Score=37.59 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.2
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999876
No 112
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=55.80 E-value=36 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.8
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999887
No 113
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.53 E-value=3.5 Score=42.17 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.7
Q ss_pred ceeecccCCCCCccccC
Q 004530 289 TCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~ 305 (746)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999983
No 114
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=55.13 E-value=3.6 Score=37.66 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=18.8
Q ss_pred eeecccCCCCCccccCCCchhHHHHHHHHh
Q 004530 290 CFAYGQTGSGKTFTMQPLPLRAAEDLVRLL 319 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i 319 (746)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----HHHHHHHHHh
Confidence 5789999999999884 3444555444
No 115
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=54.71 E-value=39 Score=41.35 Aligned_cols=34 Identities=18% Similarity=0.470 Sum_probs=24.9
Q ss_pred HHHhhhhhhHHHhh-cCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~N~tIfAYGQTGSGKTyTM 304 (746)
||.. +......++ .+.|-||+.-|.+|||||.+.
T Consensus 74 iyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 74 IFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 6652 333333333 589999999999999999887
No 116
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=54.45 E-value=4.8 Score=40.18 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=13.2
Q ss_pred ceeecccCCCCCccccCC
Q 004530 289 TCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~G 306 (746)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456689999999998843
No 117
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=54.12 E-value=5.6 Score=44.04 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=19.6
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.++..++... ..|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3344444432 357888999999999983
No 118
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=54.03 E-value=8.7 Score=42.45 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=19.2
Q ss_pred hHHHhhcC-CCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQR-TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G-~N~tIfAYGQTGSGKTyTM 304 (746)
++...+.+ .---.+-||+.|+|||.|.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33444444 4455788999999999997
No 119
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.81 E-value=6.7 Score=41.98 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=27.0
Q ss_pred eCCCCChHHHHHhhhhhhHHHhhc--CCCcceeecccCCCCCccccC
Q 004530 261 LDERVTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 261 Fd~~asQ~eVy~~~v~pLV~~vl~--G~N~tIfAYGQTGSGKTyTM~ 305 (746)
|++...|+++.+. +..++..... +.-..++-||+.|+|||+...
T Consensus 3 ~~~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 3 LAEFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444567777764 4444443322 222347789999999998773
No 120
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=53.24 E-value=4.3 Score=36.94 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=14.0
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 121
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.83 E-value=7.2 Score=40.50 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=13.8
Q ss_pred CCcceeecccCCCCCcccc
Q 004530 286 TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 286 ~N~tIfAYGQTGSGKTyTM 304 (746)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999865
No 122
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=52.21 E-value=6.4 Score=39.45 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=20.1
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..+++..++.. ...++-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 33445555543 345777899999999988
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=52.16 E-value=9.7 Score=43.94 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=14.1
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
.|+-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999877
No 124
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=51.97 E-value=5.4 Score=41.94 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=15.7
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
-.+..++..|..|||||+||
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHH
Confidence 36777888899999999998
No 125
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=51.86 E-value=3.2 Score=41.93 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.3
Q ss_pred ceeecccCCCCCccccC
Q 004530 289 TCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~ 305 (746)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 68899999999999884
No 126
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.57 E-value=7.9 Score=42.96 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 44555555443 457788999999999983
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.65 E-value=7.2 Score=41.97 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=16.6
Q ss_pred cCC-CcceeecccCCCCCccccC
Q 004530 284 QRT-KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 284 ~G~-N~tIfAYGQTGSGKTyTM~ 305 (746)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3456669999999999874
No 128
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.52 E-value=6.9 Score=50.12 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=20.1
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccCCC
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl 307 (746)
.+++.+-+|...+++. -+||||||+||..+
T Consensus 424 ai~~a~~~g~r~~Ll~-maTGSGKT~tai~l 453 (1123)
T PRK11448 424 AVEKAIVEGQREILLA-MATGTGKTRTAIAL 453 (1123)
T ss_pred HHHHHHHhccCCeEEE-eCCCCCHHHHHHHH
Confidence 3344444666554444 89999999998653
No 129
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.50 E-value=7.8 Score=44.28 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeecccCCCCCccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFT 303 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyT 303 (746)
+..+++|.| ++..++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345668887 67778999999965
No 130
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=50.21 E-value=51 Score=40.33 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=20.0
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999887
No 131
>PTZ00424 helicase 45; Provisional
Probab=49.08 E-value=7.6 Score=43.11 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+..+++|.|. +..++||||||.+.
T Consensus 59 i~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 59 IKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456788885 46789999999764
No 132
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.85 E-value=9.2 Score=38.04 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=17.3
Q ss_pred HHhhcCCCcceeecccCCCCCcccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34445776 677889999999873
No 133
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.21 E-value=7.7 Score=43.37 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
++..++.+. +.|+-.|.||||||.++
T Consensus 165 ~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 165 FLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 344444444 77999999999999987
No 134
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=47.70 E-value=6.8 Score=37.84 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=17.9
Q ss_pred ccee-ecccCCCCCccccCCCchhHHHHHHHH
Q 004530 288 ATCF-AYGQTGSGKTFTMQPLPLRAAEDLVRL 318 (746)
Q Consensus 288 ~tIf-AYGQTGSGKTyTM~Gl~~ra~~~LF~~ 318 (746)
..|+ -.|.||+||||+- ...++.||..
T Consensus 53 pLVlSfHG~tGtGKn~v~----~liA~~ly~~ 80 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS----RLIAEHLYKS 80 (127)
T ss_pred CEEEEeecCCCCcHHHHH----HHHHHHHHhc
Confidence 3444 4599999999975 3345555653
No 135
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.42 E-value=6 Score=42.68 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=15.6
Q ss_pred ceeecccCCCCCccccCCCc
Q 004530 289 TCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~Gl~ 308 (746)
.|+-.|+||+|||+|+..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 55566999999999995433
No 136
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=46.44 E-value=9.4 Score=44.74 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=59.7
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeee
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWL 333 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~v 333 (746)
.+.|+.+++....=.++.+. +..+ ...+..|+-+|.+||||++.- +.|... ..+...--|.|
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~lA--------~~ih~~----s~r~~~pfv~i 253 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELIA--------KAIHYL----SPRAKRPFVKV 253 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHHH--------HHHHHh----CCCCCCCeEEe
Confidence 47888888875433334332 2222 367888999999999999755 222221 11111112334
Q ss_pred eeEEeeCCeee-ccccccc---------cc-cceecCCCcEEEeccEEEEecCHHHHHHHHHHHH
Q 004530 334 SYFEIYGGKLF-DLLGERK---------KL-CMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGN 387 (746)
Q Consensus 334 S~lEIYnE~V~-DLL~~~~---------~l-~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~ 387 (746)
.|-.+..+.+- .|+...+ .. .+.....+-+++.++......-...++.+|+.+.
T Consensus 254 ~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 254 NCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGE 318 (534)
T ss_pred ecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCc
Confidence 44333222211 1222111 01 1222334556777777776666666777776654
No 137
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.90 E-value=9.8 Score=43.06 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
|..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 455667877 888899999999763
No 138
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=45.59 E-value=7.4 Score=43.47 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=20.1
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
..++..++. ....|+..|.||||||.+|.
T Consensus 152 ~~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 152 EAFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 344444443 34457888999999999984
No 139
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.23 E-value=9.6 Score=43.23 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=24.3
Q ss_pred CChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC
Q 004530 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 265 asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
..|+.+... ...+...+-.+.-..++-||+.|+|||++..
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 345555542 2223333334555567779999999998773
No 140
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=44.79 E-value=7.4 Score=36.34 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.5
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+.+|..|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=44.78 E-value=6.7 Score=44.26 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=29.3
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHH-HhhcC----CCcceeecccCCCCCcccc
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIP-TIFQR----TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~-~vl~G----~N~tIfAYGQTGSGKTyTM 304 (746)
.+.||.|.+-+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 345565555443334444444344433 22322 2346899999999999776
No 142
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.70 E-value=10 Score=42.88 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.1
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+..++.|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 455678988 455669999999753
No 143
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.69 E-value=6.6 Score=36.89 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.4
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999876
No 144
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=44.42 E-value=13 Score=45.17 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=22.3
Q ss_pred hhhhhHHHhhc-----CCCcceeecccCCCCCccccCC
Q 004530 274 TVEPIIPTIFQ-----RTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 274 ~v~pLV~~vl~-----G~N~tIfAYGQTGSGKTyTM~G 306 (746)
++..+++++.. |.+..|+.. .||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 46667777766 345555444 899999999953
No 145
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=44.35 E-value=18 Score=38.36 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=29.0
Q ss_pred eeCCCCChHHHHHhhhhhhHHHhhcCC--CcceeecccCCCCCccc
Q 004530 260 VLDERVTNDEVYRVTVEPIIPTIFQRT--KATCFAYGQTGSGKTFT 303 (746)
Q Consensus 260 VFd~~asQ~eVy~~~v~pLV~~vl~G~--N~tIfAYGQTGSGKTyT 303 (746)
-|++...|++|-.. .+.+++.+.... -..++-||+.|.|||..
T Consensus 22 ~L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 35666789998875 677777765432 24589999999999854
No 146
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=44.27 E-value=12 Score=43.05 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.8
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
|..+++|.| |++..+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678887 677789999999763
No 147
>PHA00729 NTP-binding motif containing protein
Probab=43.92 E-value=12 Score=39.53 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=22.6
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCccccCCC
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl 307 (746)
+.++..+..|--..|+.+|.+|+||||....+
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 44555555444457999999999999877443
No 148
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=43.49 E-value=11 Score=40.93 Aligned_cols=18 Identities=33% Similarity=0.634 Sum_probs=15.2
Q ss_pred CcceeecccCCCCCcccc
Q 004530 287 KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM 304 (746)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346889999999999875
No 149
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=42.84 E-value=10 Score=42.55 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=29.5
Q ss_pred eEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 253 HEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 253 ~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..|.|+.|-++ +++=.. |+..+.+-.-+.|+-+|.+|||||+.+
T Consensus 12 ~~~pf~~ivGq----~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 36888888654 444333 333444433356889999999999988
No 150
>PRK13764 ATPase; Provisional
Probab=42.41 E-value=11 Score=45.27 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.9
Q ss_pred CcceeecccCCCCCccccCC
Q 004530 287 KATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~G 306 (746)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999954
No 151
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=42.17 E-value=53 Score=37.06 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccC-------------------CCchh---HHHHHHHHh
Q 004530 262 DERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQ-------------------PLPLR---AAEDLVRLL 319 (746)
Q Consensus 262 d~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~-------------------Gl~~r---a~~~LF~~i 319 (746)
+-...|+.+++- + -..++.|-.-.++-.|+.|||||+-+- |...- ++.+|-..+
T Consensus 28 g~~~~~~~l~~~-l---kqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 28 GVQDEQKHLSEL-L---KQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ehHHHHHHHHHH-H---HHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 344556777763 2 235567888889999999999999762 32222 666676666
Q ss_pred ccccccccceeeeeeeEEe--------------------eCCeeecccccccc-------ccceecCCCcEEEeccEEEE
Q 004530 320 HQPVYRNQRFKLWLSYFEI--------------------YGGKLFDLLGERKK-------LCMREDGRQQVCIVGLQEFE 372 (746)
Q Consensus 320 ~~~~~~~~~f~V~vS~lEI--------------------YnE~V~DLL~~~~~-------l~Ired~~~~v~V~GLtev~ 372 (746)
.....+ ...+..||-|. +-..=+||..+... ..+.+..+.-++|-|+|.
T Consensus 104 ~~e~~~--~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt-- 179 (408)
T KOG2228|consen 104 ALELNR--IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT-- 179 (408)
T ss_pred HHHHhh--hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec--
Confidence 543322 24455566551 11222677765432 245556666778877654
Q ss_pred ecCHHHHHHHHHHHHhcCC
Q 004530 373 VSDVQIVKEYIEKGNAARS 391 (746)
Q Consensus 373 V~S~eE~~~lL~~G~~~R~ 391 (746)
--+++++|++--+.|-
T Consensus 180 ---rld~lE~LEKRVKSRF 195 (408)
T KOG2228|consen 180 ---RLDILELLEKRVKSRF 195 (408)
T ss_pred ---cccHHHHHHHHHHhhc
Confidence 4567888887655553
No 152
>PRK06547 hypothetical protein; Provisional
Probab=42.14 E-value=13 Score=37.19 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=18.9
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.++..+..+.---|.-+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33444544444445666699999999865
No 153
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=42.10 E-value=11 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.1
Q ss_pred HHHhhhhhhHHHh-hcCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTI-FQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~v-l~G~N~tIfAYGQTGSGKTyTM 304 (746)
||.. +......+ -.+.|-||+-.|.+|||||.|+
T Consensus 68 if~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchh-hhcccccccccccccceeeccccccccccch
Confidence 6653 33333333 3689999999999999999986
No 154
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.05 E-value=23 Score=39.96 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=20.9
Q ss_pred hhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+|..+|+|.+| +-...||||||..+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 457788899996 45668999999876
No 155
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=41.68 E-value=9.5 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.0
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
..-..+|..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34467899999999999876
No 156
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.48 E-value=8.8 Score=43.60 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.5
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999983
No 157
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=41.26 E-value=12 Score=43.27 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred cCCCcceEEEEEeCCCCCChHHHHHHHHHHH--Hhccccccc
Q 004530 503 FVGNSKTVMISCISPNVGSCEHTLNTLRYAD--RVKSLSKSG 542 (746)
Q Consensus 503 LgGnskT~mIa~VSPs~~~~eETLsTLrfA~--Rak~I~~~~ 542 (746)
|.-..+..+||+++....+ +..|.+|- |..-|...|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4557889999999987654 44565554 444444444
No 158
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.50 E-value=16 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.8
Q ss_pred HhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 272 RVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 272 ~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
...+.||+ ..+.--+..|.-||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 44456666 556677788999999999999887
No 159
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=40.47 E-value=9.5 Score=34.54 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.6
Q ss_pred eeecccCCCCCccccC
Q 004530 290 CFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~ 305 (746)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5678999999998774
No 160
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=40.12 E-value=9.3 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.8
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999966
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=39.95 E-value=13 Score=44.57 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=28.5
Q ss_pred EEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 255 F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
-+||.+++. ...... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 356666653 333332 344555677778899999999999876
No 162
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=39.60 E-value=18 Score=41.34 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=25.1
Q ss_pred hHHHHHhhhhhhHHHhhcC----CCcceeecccCCCCCccccC
Q 004530 267 NDEVYRVTVEPIIPTIFQR----TKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 267 Q~eVy~~~v~pLV~~vl~G----~N~tIfAYGQTGSGKTyTM~ 305 (746)
....|.....-++.++.+- ....|.-.|+||-|||.|+-
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3444544444444444443 25667778999999999984
No 163
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=39.58 E-value=15 Score=43.42 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=22.7
Q ss_pred hhhhHHHhhcCCC--cceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRTK--ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~N--~tIfAYGQTGSGKTyTM 304 (746)
|+..++..+.|.. -.++-+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5556666665543 46788999999999998
No 164
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=39.34 E-value=16 Score=40.76 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhCccccccccccCCCcc-cccchhhh---ccccccchHHHHHHHHHHHhhcc
Q 004530 36 GDAVMARWLQSAGLQHLASPLASNGIDH-RLLPNLLM---QGYGAQSAEEKQRLFKLMRNLNF 94 (746)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 94 (746)
.-.+|..||+.-||+|+...|-..|.|. +.|-.+.- ...|+++...|.||..-++.+.-
T Consensus 214 ~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e 276 (361)
T KOG4384|consen 214 HPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKE 276 (361)
T ss_pred CchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999885 44444333 45799999999999988876643
No 165
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=39.25 E-value=11 Score=39.88 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.8
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45788999999999887
No 166
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.82 E-value=16 Score=40.04 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCChHHHHHhhhhhhHHHhhc--CCCcceeecccCCCCCccccC
Q 004530 264 RVTNDEVYRVTVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 264 ~asQ~eVy~~~v~pLV~~vl~--G~N~tIfAYGQTGSGKTyTM~ 305 (746)
...|+++-+. +..++..... +....++-||++|+|||+.+.
T Consensus 27 ~vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 27 FIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred hcCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 3455555543 3334443322 222467889999999999874
No 167
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.16 E-value=18 Score=38.69 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.7
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999887
No 168
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.86 E-value=18 Score=46.14 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=13.9
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
..++-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45667899999999765
No 169
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.46 E-value=18 Score=41.70 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=18.5
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|..+++|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 3456678887 456679999999764
No 170
>PLN03025 replication factor C subunit; Provisional
Probab=37.14 E-value=19 Score=39.25 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.5
Q ss_pred CCCcceeecccCCCCCccccCC
Q 004530 285 RTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM~G 306 (746)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3333467799999999999843
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.98 E-value=13 Score=42.14 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=16.9
Q ss_pred CcceeecccCCCCCccccCCC
Q 004530 287 KATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~Gl 307 (746)
...++-+|+||+|||+|+.-+
T Consensus 137 g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998433
No 172
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.92 E-value=16 Score=44.13 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=19.2
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|..+++|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 778889999999764
No 173
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=36.87 E-value=19 Score=44.62 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred chhhhhh------ccCCCcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccc
Q 004530 495 LTEVLRD------SFVGNSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541 (746)
Q Consensus 495 LTrLLqD------sLgGnskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~ 541 (746)
.+++||- -++..++..+|+ .+.++.+.++-.+.+++.-+.-
T Consensus 335 V~r~lQRiGRsgHr~~~~Skg~ii~------~~r~dllE~~vi~~~a~~g~le 381 (814)
T COG1201 335 VNRFLQRIGRAGHRLGEVSKGIIIA------EDRDDLLECLVLADLALEGKLE 381 (814)
T ss_pred HHHHhHhccccccccCCcccEEEEe------cCHHHHHHHHHHHHHHHhCCcc
Confidence 6778874 366678888775 3468888888888888766543
No 174
>PRK10536 hypothetical protein; Provisional
Probab=35.71 E-value=19 Score=38.91 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=26.5
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-.|-+-+..|..... .+.+ +.-++..|.+||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3555555555555554433 2223 348999999999999976
No 175
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.23 E-value=16 Score=41.95 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.7
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+..+++|.|+.+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 3556789988654 559999999664
No 176
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.13 E-value=18 Score=42.98 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 456778998 566789999999764
No 177
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=35.02 E-value=18 Score=39.60 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred hcCCCcceeecccCCCCCccccC
Q 004530 283 FQRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 283 l~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
....+..++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 35677889999999999999983
No 178
>PF05729 NACHT: NACHT domain
Probab=34.84 E-value=15 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.5
Q ss_pred ceeecccCCCCCccccC
Q 004530 289 TCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~ 305 (746)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999883
No 179
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=34.80 E-value=19 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.8
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
.-+.+|.-+|.-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999877
No 180
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=34.76 E-value=12 Score=42.55 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=15.9
Q ss_pred CcceeecccCCCCCccccCC
Q 004530 287 KATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~G 306 (746)
+--++.+|.||||||..|..
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~ 61 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRE 61 (410)
T ss_pred hccEEEEcCCCCCHHHHHHH
Confidence 44578899999999987643
No 181
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=34.04 E-value=16 Score=44.12 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.8
Q ss_pred ceeecccCCCCCccccC
Q 004530 289 TCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~ 305 (746)
.++-.|+.|||||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46689999999999984
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.96 E-value=14 Score=34.41 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.5
Q ss_pred eeecccCCCCCccccC
Q 004530 290 CFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~ 305 (746)
++-+|.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4668999999998774
No 183
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.76 E-value=20 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.6
Q ss_pred cCCCcceeecccCCCCCccccC
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~ 305 (746)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4444578889999999998874
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=33.66 E-value=22 Score=42.48 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.1
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
-..+-.|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456678999999999984
No 185
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=33.63 E-value=20 Score=43.45 Aligned_cols=116 Identities=15% Similarity=0.253 Sum_probs=57.8
Q ss_pred EEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeee
Q 004530 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLS 334 (746)
Q Consensus 255 F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS 334 (746)
+.|+.+++....-..+.+. +.. +...+..|+-+|.+|||||+.- ..|..... +...--+.+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA--------~~ih~~s~----r~~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA--------RAIHNLSG----RNNRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH--------HHHHHhcC----CCCCCeEEEe
Confidence 5667666654333333332 222 3466788999999999999743 22222111 1111123333
Q ss_pred eEEeeCCeee-ccccccc---------cc-cceecCCCcEEEeccEEEEecCHHHHHHHHHHHHh
Q 004530 335 YFEIYGGKLF-DLLGERK---------KL-CMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNA 388 (746)
Q Consensus 335 ~lEIYnE~V~-DLL~~~~---------~l-~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~ 388 (746)
|-.+..+.+. +|+...+ .+ .+.....+-+++.++......--..+..+|+.+.-
T Consensus 435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 499 (686)
T ss_pred cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCE
Confidence 3333221111 2222110 11 11122234567777777776666777787776543
No 186
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=33.51 E-value=24 Score=38.98 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.9
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999983
No 187
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=33.49 E-value=22 Score=38.85 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 455666666544 46677799999999987
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=33.37 E-value=24 Score=37.53 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=18.4
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.++..+..|.+ |+-+|.+|+|||...
T Consensus 12 ~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 344444455554 456899999999765
No 189
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=33.33 E-value=15 Score=38.62 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=17.3
Q ss_pred CcceeecccCCCCCccccCCC
Q 004530 287 KATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~Gl 307 (746)
...++-||..|+|||++...+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987443
No 190
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=32.90 E-value=53 Score=26.01 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCcchHHHHHHHHHhCc
Q 004530 13 AAAALYDHPGGSMHNNAGPTTDAGDAVMARWLQSAGL 49 (746)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (746)
--.|+..| |..|..-.|.|-||++.|=
T Consensus 5 ll~AI~~~----------P~ddt~RLvYADWL~e~gd 31 (42)
T TIGR02996 5 LLRAILAH----------PDDDTPRLVYADWLDEHGD 31 (42)
T ss_pred HHHHHHhC----------CCCcchHHHHHHHHHHcCC
Confidence 34677777 6689999999999999884
No 191
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.81 E-value=18 Score=39.03 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+++.++.. +--|+-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444443 556789999999999876
No 192
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=32.42 E-value=39 Score=37.01 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=25.5
Q ss_pred ceeecccCCCCCccccC-----------CCchhHHHHHHHHhcc
Q 004530 289 TCFAYGQTGSGKTFTMQ-----------PLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~-----------Gl~~ra~~~LF~~i~~ 321 (746)
.|+.-|.+|||||..|. .+|+..+..+.+.+.+
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQ 46 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHh
Confidence 36778999999999883 3778777777777663
No 193
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=32.41 E-value=15 Score=40.80 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=13.2
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
...||+|||||++.+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 466999999999987
No 194
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.31 E-value=20 Score=39.29 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.6
Q ss_pred HhhcCCCcceeecccCCCCCcccc
Q 004530 281 TIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 281 ~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
++-+|+.-.|+|.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 555899999999999999999877
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.29 E-value=19 Score=40.28 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=15.9
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
=..+.|+..|+||||||+.-
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 34567899999999999753
No 196
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=42 Score=36.68 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=25.5
Q ss_pred cceeecccCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 004530 288 ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~-----------------------Gl~~ra~~~LF~~i~~ 321 (746)
-.|+.||+.|+|||..-. |-..|.+++||.....
T Consensus 212 kgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 358999999999997641 3346778888887654
No 197
>PHA02653 RNA helicase NPH-II; Provisional
Probab=32.03 E-value=27 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=18.0
Q ss_pred hHHHhhcCCCcceeecccCCCCCccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFT 303 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyT 303 (746)
++..+++|.+ |+..|+||||||..
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 4455566764 68899999999965
No 198
>PRK04195 replication factor C large subunit; Provisional
Probab=31.71 E-value=21 Score=41.35 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=22.1
Q ss_pred hhhhHHHhhcCC-CcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRT-KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~-N~tIfAYGQTGSGKTyTM 304 (746)
+...+.....|. .-.++-||+.|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555554 567889999999999887
No 199
>PHA02244 ATPase-like protein
Probab=31.61 E-value=31 Score=39.25 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.7
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.+ |+-+|++|+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4554 555899999999876
No 200
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=31.37 E-value=55 Score=39.97 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCccCCCCcchhhhhhccCCCc----ce-----EEEEEeCCCCCChHHHHHHHHHHHHhcccccccCc
Q 004530 486 IHIPFRGSKLTEVLRDSFVGNS----KT-----VMISCISPNVGSCEHTLNTLRYADRVKSLSKSGNT 544 (746)
Q Consensus 486 ~hIPYRdSKLTrLLqDsLgGns----kT-----~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~~~~ 544 (746)
.+-||-...|..++...|.|-. .. -=|+.||- ++-..|.++.||..|......
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEERNV 633 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhhcc
Confidence 4567877788888888887640 00 01233442 356778899999888766544
No 201
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=31.34 E-value=36 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=25.3
Q ss_pred HHHhhhhhhHHHhh-cCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~N~tIfAYGQTGSGKTyTM 304 (746)
||.. +......++ .+.|-||+.-|.+|||||.|.
T Consensus 75 ifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 75 VYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred HHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 6653 333333333 589999999999999999986
No 202
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=31.21 E-value=22 Score=39.57 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=21.9
Q ss_pred hhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345556666644 68888999999999877
No 203
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.08 E-value=22 Score=35.83 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=18.8
Q ss_pred HHhhcCC---CcceeecccCCCCCcccc
Q 004530 280 PTIFQRT---KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G~---N~tIfAYGQTGSGKTyTM 304 (746)
|.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455553 567889999999999655
No 204
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.97 E-value=36 Score=39.36 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=16.1
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
-..|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578888999999999983
No 205
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=30.96 E-value=30 Score=40.55 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=18.2
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+..++.|.| +++..+||||||.+.
T Consensus 152 ip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHHH
Confidence 455678876 677789999999653
No 206
>PF13173 AAA_14: AAA domain
Probab=30.73 E-value=17 Score=33.92 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.4
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 207
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=30.70 E-value=14 Score=36.95 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred HHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeeeeEEe-eCCeeec
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEI-YGGKLFD 345 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEI-YnE~V~D 345 (746)
+...+.+ -+++-.|++|.|||..+-.+.+...... ..+.....++.+.+.....+++ .+.-|.|
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~~~~t-~~is~~~~rGkHTTt~~~l~~l~~g~~iID 93 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLINALLPEAKQKT-GEISEKTGRGKHTTTHRELFPLPDGGYIID 93 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETTSEEEEC
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHHHHHhhcchhh-hhhhcccCCCcccCCCeeEEecCCCcEEEE
Confidence 4455667 4566679999999988744333321111 1122222345555666666666 4444444
No 208
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.63 E-value=24 Score=42.94 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=24.1
Q ss_pred eCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 261 LDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 261 Fd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.....|+++++.+... + ....++.+|.||||||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHH
Confidence 34445677666654322 1 3345899999999999765
No 209
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=30.55 E-value=25 Score=43.30 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.7
Q ss_pred CCcceeecccCCCCCcccc
Q 004530 286 TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 286 ~N~tIfAYGQTGSGKTyTM 304 (746)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3566778899999999876
No 210
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=30.39 E-value=32 Score=38.85 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.1
Q ss_pred hhHHHhhcCCC---cceeecccCCCCCcccc
Q 004530 277 PIIPTIFQRTK---ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 277 pLV~~vl~G~N---~tIfAYGQTGSGKTyTM 304 (746)
|.++..+.|.- .|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 55677777754 45554 99999999877
No 211
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=30.37 E-value=21 Score=41.76 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=57.7
Q ss_pred EeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeeee
Q 004530 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSY 335 (746)
Q Consensus 256 ~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~ 335 (746)
.|+.+.+....=..+++. |.. +...+..|+-+|.+||||++.. ++ |... ..+...--|.|.|
T Consensus 185 ~~~~iig~s~~~~~~~~~-----i~~-~a~~~~pVlI~Ge~GtGK~~~A-----~~---ih~~----s~r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKE-----IEV-VAASDLNVLILGETGVGKELVA-----RA---IHAA----SPRADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCccHHHHH-----HH---HHHh----CCcCCCCeEEEEc
Confidence 666676654433334332 333 3567899999999999999654 22 2221 1111112234444
Q ss_pred EEeeCCeee-ccccccc----------cccceecCCCcEEEeccEEEEecCHHHHHHHHHHHH
Q 004530 336 FEIYGGKLF-DLLGERK----------KLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGN 387 (746)
Q Consensus 336 lEIYnE~V~-DLL~~~~----------~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~ 387 (746)
-.+..+.+- .|+...+ .-.+.....+-+++.++.+....-...++.+|+.+.
T Consensus 247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 444322111 1222111 111222334556777777777655666667666543
No 212
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=30.13 E-value=24 Score=42.22 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.4
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
|..+++|.++.+ ..+||+|||.+.
T Consensus 34 i~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 34 IDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHcCCCEEE--EcCCCchHHHHH
Confidence 345668887654 579999999753
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=29.94 E-value=40 Score=37.61 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.3
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999983
No 214
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=29.82 E-value=39 Score=41.22 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=24.7
Q ss_pred HHHhhhhhhHHHhh-cCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~N~tIfAYGQTGSGKTyTM 304 (746)
||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 69 IFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred HHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 5652 233333333 589999999999999999986
No 215
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.73 E-value=26 Score=40.05 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.8
Q ss_pred CChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 265 asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..|+.+... ..+|-.-+-.|.-...+-||+.|+|||..-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 456777754 444444444677788999999999999653
No 216
>PRK04328 hypothetical protein; Provisional
Probab=29.65 E-value=29 Score=36.68 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.4
Q ss_pred hhhhHHHhhcC---CCcceeecccCCCCCcc
Q 004530 275 VEPIIPTIFQR---TKATCFAYGQTGSGKTF 302 (746)
Q Consensus 275 v~pLV~~vl~G---~N~tIfAYGQTGSGKTy 302 (746)
.-+-++.++.| ...+++-+|.+|+|||.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 34456888876 57889999999999984
No 217
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=29.64 E-value=38 Score=41.45 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.7
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999987
No 218
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.12 E-value=19 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-.|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999999765
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.94 E-value=19 Score=41.24 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.0
Q ss_pred ceeecccCCCCCccccCC
Q 004530 289 TCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~G 306 (746)
+|+-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999854
No 220
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=28.81 E-value=39 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHhhhhhhHHHhh-cCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIF-QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl-~G~N~tIfAYGQTGSGKTyTM 304 (746)
||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 70 LFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 6653 333333333 689999999999999999987
No 221
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=28.64 E-value=16 Score=39.66 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 478889999999999999655
No 222
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=28.48 E-value=14 Score=41.79 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=13.2
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
--++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 347788999999998764
No 223
>PRK00131 aroK shikimate kinase; Reviewed
Probab=28.17 E-value=23 Score=34.02 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.8
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
.+|+.+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999875
No 224
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=27.97 E-value=30 Score=35.37 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.1
Q ss_pred hhhhHHHhhcC---CCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQR---TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G---~N~tIfAYGQTGSGKTyTM 304 (746)
+-+-+|.++.| ...++.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34556788876 4567889999999999765
No 225
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=27.81 E-value=31 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.5
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+|..+++|.|+ ++.-+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 34466789874 55569999999874
No 226
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.78 E-value=35 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=26.3
Q ss_pred CcceeecccCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 004530 287 KATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~-----------------------Gl~~ra~~~LF~~i~~ 321 (746)
...|+-||+.|+||||... |-....+++||.....
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 4568999999999999752 3345677888877654
No 227
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=25 Score=39.22 Aligned_cols=114 Identities=24% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEEeCCCCchhhccCCCcEEEEeCCeEEEeCCCc-cccccc---cccceEEEeeeeeCCCCChHHHHHhhhhhhHHHh
Q 004530 207 RVVVRKRPLNKKELSRKEEDIVTVSDNALTVHEPKL-KVDLTA---YVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTI 282 (746)
Q Consensus 207 rV~VRVRPl~~~E~~~~~~~iv~v~~~~vtv~~p~~-~~~~~~---~~~~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~v 282 (746)
|-+|++|--..++..... ..+..+=.++++..--. .+++.. ......++|+.|-+-...-.++-+.+.-||+...
T Consensus 78 ryvvg~~~~~D~~~i~~G-~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~ 156 (388)
T KOG0651|consen 78 RYVVGCRRSVDKEKIARG-TRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPE 156 (388)
T ss_pred cEEEEcccccchhhhccC-ceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCch
Confidence 445788776666543221 22333334454432211 111111 1124578899988765444555566667777643
Q ss_pred h-c--CCC--cceeecccCCCCCcccc-----------------------CCCchhHHHHHHHHhcc
Q 004530 283 F-Q--RTK--ATCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 283 l-~--G~N--~tIfAYGQTGSGKTyTM-----------------------~Gl~~ra~~~LF~~i~~ 321 (746)
+ . |.. --+.-||+.|+|||+-- .|-+.|.+++.|....+
T Consensus 157 lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 157 LFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYARE 223 (388)
T ss_pred hccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 3 3 333 23788999999999853 13456788888887655
No 228
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=27.71 E-value=26 Score=42.91 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=25.1
Q ss_pred hhHHHhhcCCCcceeecccCCCCCccccCCCchhH
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRA 311 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra 311 (746)
.++.-+..+....++-||.+|+|||....++..+.
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35544455566678899999999999886655443
No 229
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=27.49 E-value=39 Score=34.99 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHhhhhhhHHHhhc-CCCcceeecccCCCCCcccc
Q 004530 269 EVYRVTVEPIIPTIFQ-RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 269 eVy~~~v~pLV~~vl~-G~N~tIfAYGQTGSGKTyTM 304 (746)
.+|...+.-|...+-. +..-.|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3455444444333333 33445555699999999876
No 230
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=27.48 E-value=28 Score=38.87 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.5
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
++.+|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578899999999887
No 231
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=27.44 E-value=20 Score=30.37 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.7
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999876
No 232
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=27.23 E-value=34 Score=35.30 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.8
Q ss_pred hhhhHHHhhcCC---CcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRT---KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~---N~tIfAYGQTGSGKTyTM 304 (746)
+-+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 445567777653 677888899999999765
No 233
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.21 E-value=27 Score=40.79 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=17.4
Q ss_pred HHhhcCCCcceeecccCCCCCcccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..+.+|.+ ++|++|||||||+..
T Consensus 106 p~i~~Grd--l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 106 PIISGGRD--LMACAQTGSGKTAAF 128 (482)
T ss_pred ceeecCCc--eEEEccCCCcchHHH
Confidence 33445665 489999999999875
No 234
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=27.13 E-value=35 Score=42.24 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=26.5
Q ss_pred hhhhhHHHhhcCCCcceeecccCCCCCccccCCCc
Q 004530 274 TVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLP 308 (746)
Q Consensus 274 ~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~ 308 (746)
++..+++++-+|.+-.+++. .||+|||||-+-++
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii 206 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAII 206 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHH
Confidence 45778888889999866555 79999999975433
No 235
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=26.83 E-value=56 Score=34.50 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=24.1
Q ss_pred CcceeecccCCCCCccccC------C-----------CchhHHHHHHHHhcc
Q 004530 287 KATCFAYGQTGSGKTFTMQ------P-----------LPLRAAEDLVRLLHQ 321 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~------G-----------l~~ra~~~LF~~i~~ 321 (746)
+-+-..+|++|+|||.|+. | +....+..||..+.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 4455679999999999983 3 345666667766554
No 236
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=26.74 E-value=22 Score=41.31 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.5
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
-.|+-||++|+|||+.+.
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358899999999999873
No 237
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.62 E-value=22 Score=41.55 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=15.5
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..|.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999984
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.55 E-value=41 Score=38.77 Aligned_cols=18 Identities=44% Similarity=0.495 Sum_probs=15.8
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 567889999999999984
No 239
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=26.51 E-value=25 Score=34.46 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.2
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 240
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=26.44 E-value=28 Score=38.38 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.1
Q ss_pred CCCcceeecccCCCCCcccc
Q 004530 285 RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM 304 (746)
..+.-|+-+|.+||||++..
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 56788999999999999654
No 241
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=26.39 E-value=24 Score=43.35 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.1
Q ss_pred CcceeecccCCCCCccccCC
Q 004530 287 KATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~G 306 (746)
|..++..|.||||||++|.-
T Consensus 430 n~n~~I~G~tGsGKS~~~~~ 449 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQE 449 (797)
T ss_pred ccceEEEcCCCCCHHHHHHH
Confidence 55688899999999999953
No 242
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=26.36 E-value=24 Score=38.37 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.4
Q ss_pred CcceEEEEEeCCCCCChHHHHHHHHHHHHhcccccc
Q 004530 506 NSKTVMISCISPNVGSCEHTLNTLRYADRVKSLSKS 541 (746)
Q Consensus 506 nskT~mIa~VSPs~~~~eETLsTLrfA~Rak~I~~~ 541 (746)
-++|+++++ .+.+|. |++|+|+.-+..+
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~~G 212 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMDAG 212 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEecCC
Confidence 367888875 566665 7899999877644
No 243
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=26.17 E-value=37 Score=42.27 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 270 Vy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
||. ....+++.+-++. .|+..|+||||||..+
T Consensus 6 i~~-~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAA-VLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHH-HHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 444 3455555554443 4778999999999776
No 244
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=26.14 E-value=33 Score=35.08 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred hhhHHHhhcC---CCcceeecccCCCCCccc
Q 004530 276 EPIIPTIFQR---TKATCFAYGQTGSGKTFT 303 (746)
Q Consensus 276 ~pLV~~vl~G---~N~tIfAYGQTGSGKTyT 303 (746)
-+-++.++.| .+.+++.+|.+|||||.-
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 3456777755 578899999999999954
No 245
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=26.11 E-value=23 Score=38.12 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.7
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999999765
No 246
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=25.97 E-value=33 Score=41.15 Aligned_cols=116 Identities=11% Similarity=0.113 Sum_probs=56.8
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeee
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWL 333 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~v 333 (746)
.+.|+.+.+... .+..+.. .+..+ ...+..|+-+|.+||||++.- +.|... ..+...--|.|
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~-~~~~~-a~~~~pvli~Ge~GtGK~~~A--------~~ih~~----s~r~~~pfv~v 382 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIH-FGRQA-AKSSFPVLLCGEEGVGKALLA--------QAIHNE----SERAAGPYIAV 382 (638)
T ss_pred cccccceEECCH----HHHHHHH-HHHHH-hCcCCCEEEECCCCcCHHHHH--------HHHHHh----CCccCCCeEEE
Confidence 467777765433 3333222 22333 256788999999999999654 222221 11111112233
Q ss_pred eeEEeeCCee-ecccccc------ccc-cceecCCCcEEEeccEEEEecCHHHHHHHHHHHH
Q 004530 334 SYFEIYGGKL-FDLLGER------KKL-CMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGN 387 (746)
Q Consensus 334 S~lEIYnE~V-~DLL~~~------~~l-~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~ 387 (746)
.|-.+..+.+ -+|+... ... .+.....+-+++.++......--..++.+|+.+.
T Consensus 383 nc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 383 NCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGV 444 (638)
T ss_pred ECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 3333322211 1233211 111 2223334556777777766666666677776543
No 247
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=25.90 E-value=35 Score=38.00 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHhhcCCCcceeecccCCCCCcccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+.+.+|.+..+|...+||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 3456787777888899999999863
No 248
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=42 Score=37.34 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=31.0
Q ss_pred HHhhcCCC---cceeecccCCCCCcccc-----------------------CCCchhHHHHHHHHhcc
Q 004530 280 PTIFQRTK---ATCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 280 ~~vl~G~N---~tIfAYGQTGSGKTyTM-----------------------~Gl~~ra~~~LF~~i~~ 321 (746)
.++|.|.- ..|+-||+.|+||+|.- .|-..+.+..||....+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe 223 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARE 223 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666654 56999999999999964 14456778888887655
No 249
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=25.45 E-value=28 Score=32.89 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.8
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999765
No 250
>PHA01747 putative ATP-dependent protease
Probab=25.19 E-value=29 Score=39.52 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=56.7
Q ss_pred HHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCchhHHHHHHHHhccccccccceeeeeeeEEeeCCe------e
Q 004530 270 VYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGK------L 343 (746)
Q Consensus 270 Vy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ra~~~LF~~i~~~~~~~~~f~V~vS~lEIYnE~------V 343 (746)
++=.-+-|+|+.-..+.|.-++=.|+.||||||+..- +.. +|-+-+++++ +
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f~e------------is~-----------fsp~~iSGG~~TvA~LF 229 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTFVI------------LQE-----------LFNFRYYTEPPTYANLV 229 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHHHH------------hhh-----------cCCceeeCCCCchHHhe
Confidence 3433466778766678899999999999999997631 100 0000112222 3
Q ss_pred eccccccccccceecCCCcEEEeccEEEEecCHHHHHHHHHHHHhcC
Q 004530 344 FDLLGERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAAR 390 (746)
Q Consensus 344 ~DLL~~~~~l~Ired~~~~v~V~GLtev~V~S~eE~~~lL~~G~~~R 390 (746)
||.-.....+.-+.| .+.+..+..+.-.+..|+..+|+.++.+-
T Consensus 230 yN~~t~~~GLVg~~D---~VaFDEVa~i~f~~~kdiv~IMKdYMesG 273 (425)
T PHA01747 230 YDAKTNALGLVFLSN---GLIFDEIQTWKDSNMRAINSTLSTGMENC 273 (425)
T ss_pred EecCCCceeEEeecc---EEEEEccccccCCCHHHHHHHHHHHhhcc
Confidence 444433333433333 35555555566677788888888877663
No 251
>PRK07261 topology modulation protein; Provisional
Probab=25.16 E-value=28 Score=34.59 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=12.8
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-.|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999765
No 252
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=25.00 E-value=88 Score=38.10 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.7
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+.|-||+.-|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999997
No 253
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=24.63 E-value=23 Score=34.58 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.3
Q ss_pred cceeecccCCCCCcccc
Q 004530 288 ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM 304 (746)
...+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999887
No 254
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.62 E-value=39 Score=40.11 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=29.1
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|+.+++....=+.+. ..+.. +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~~m~~~~-----~~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVR-----QTILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHH-----HHHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 367777776543222222 22322 3567889999999999999654
No 255
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=24.60 E-value=48 Score=40.38 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred CCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 262 DERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 262 d~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+...|+.+...+.. ..-.++..-++..|+||||||.+.
T Consensus 261 ~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 344456655554332 333445556899999999999765
No 256
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=24.53 E-value=25 Score=40.73 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=18.9
Q ss_pred cCCCcceeecccCCCCCccccCCCchh
Q 004530 284 QRTKATCFAYGQTGSGKTFTMQPLPLR 310 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM~Gl~~r 310 (746)
.++| ++-.|++|+||||...++.+.
T Consensus 208 ~~~N--li~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYN--LIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCc--EEEECCCCCCHHHHHHHHhHH
Confidence 5666 566799999999988665554
No 257
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.52 E-value=60 Score=36.06 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.4
Q ss_pred ceeecccCCCCCcccc-----------------------CCCchhHHHHHHHHhccc
Q 004530 289 TCFAYGQTGSGKTFTM-----------------------QPLPLRAAEDLVRLLHQP 322 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM-----------------------~Gl~~ra~~~LF~~i~~~ 322 (746)
.|+-||..|+|||..- .|-.|+.++.||+...+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 4889999999999643 256789999999987653
No 258
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=24.46 E-value=26 Score=33.81 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.6
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-.|.+|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 456799999998543
No 259
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.38 E-value=25 Score=38.66 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.0
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
.-+|+-.|.||||||++|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457888999999999984
No 260
>PTZ00110 helicase; Provisional
Probab=24.32 E-value=33 Score=40.50 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.2
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+..++.|.++ ++..+||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4456789875 56679999999763
No 261
>PRK13767 ATP-dependent helicase; Provisional
Probab=23.87 E-value=36 Score=42.66 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=16.9
Q ss_pred HHhhcCCCcceeecccCCCCCcccc
Q 004530 280 PTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 280 ~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..+++|.|+.| ..+||||||.+.
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34568887555 559999999763
No 262
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=23.84 E-value=27 Score=37.67 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=14.1
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4888999999999776
No 263
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=23.82 E-value=31 Score=34.03 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.0
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999654
No 264
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=23.81 E-value=29 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.7
Q ss_pred CCCcceeecccCCCCCccccCC
Q 004530 285 RTKATCFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 285 G~N~tIfAYGQTGSGKTyTM~G 306 (746)
..|.-.+..|.||||||++|..
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CCcccEEEECCCCCCHHHHHHH
Confidence 3478889999999999999854
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=23.70 E-value=29 Score=37.63 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.5
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999876
No 266
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=23.61 E-value=42 Score=34.08 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred hhHHHhhc-CCC--cceeecccCCCCCcccc
Q 004530 277 PIIPTIFQ-RTK--ATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 277 pLV~~vl~-G~N--~tIfAYGQTGSGKTyTM 304 (746)
+-++.++. |.. ..+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 44677776 443 45889999999999765
No 267
>PRK01172 ski2-like helicase; Provisional
Probab=23.47 E-value=41 Score=40.64 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=20.9
Q ss_pred CChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 265 VTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 265 asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.-|.+++. .+++|.| ++..++||||||...
T Consensus 25 ~~Q~~ai~--------~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 25 DHQRMAIE--------QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHHHHHHH--------HHhcCCc--EEEECCCCchHHHHH
Confidence 35666654 3456776 677789999999753
No 268
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.42 E-value=47 Score=34.82 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.6
Q ss_pred hhhhhHHHhhc--CCCcceeecccCCCCCcccc
Q 004530 274 TVEPIIPTIFQ--RTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 274 ~v~pLV~~vl~--G~N~tIfAYGQTGSGKTyTM 304 (746)
.+..+++.+.+ .....|.-+|..|.|||...
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 34556666666 66778899999999999765
No 269
>PRK06696 uridine kinase; Validated
Probab=23.26 E-value=50 Score=34.01 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=19.6
Q ss_pred hhhhHHHhh---cCCCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIF---QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl---~G~N~tIfAYGQTGSGKTyTM 304 (746)
++.|.+.++ .+....|.--|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 334444444 344556667799999999765
No 270
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.20 E-value=44 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=22.5
Q ss_pred hhhhHHHhhcC-C--CcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQR-T--KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G-~--N~tIfAYGQTGSGKTyTM 304 (746)
+-+-++.++.| . ...+.-+|.+|+|||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 44567788864 3 456788999999999866
No 271
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=23.12 E-value=53 Score=40.72 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.8
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 699999999999999999886
No 272
>PRK08118 topology modulation protein; Reviewed
Probab=23.11 E-value=32 Score=34.09 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=12.1
Q ss_pred eeecccCCCCCccc
Q 004530 290 CFAYGQTGSGKTFT 303 (746)
Q Consensus 290 IfAYGQTGSGKTyT 303 (746)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999953
No 273
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=23.05 E-value=28 Score=34.17 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.0
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
.|+-.|.+|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999887
No 274
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=23.03 E-value=27 Score=42.75 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.1
Q ss_pred eeecccCCCCCccccCC
Q 004530 290 CFAYGQTGSGKTFTMQP 306 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~G 306 (746)
++..|.||||||.+|..
T Consensus 188 ~li~GttGSGKS~~i~~ 204 (732)
T PRK13700 188 FCLHGTVGAGKSEVIRR 204 (732)
T ss_pred eEEeCCCCCCHHHHHHH
Confidence 57789999999997743
No 275
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=22.85 E-value=46 Score=39.59 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=23.4
Q ss_pred eeecccCCCCCccccC--------C----CchhHHHHHHHHhcc
Q 004530 290 CFAYGQTGSGKTFTMQ--------P----LPLRAAEDLVRLLHQ 321 (746)
Q Consensus 290 IfAYGQTGSGKTyTM~--------G----l~~ra~~~LF~~i~~ 321 (746)
||..|+|.|||||--. | -.-..+.++|+.++.
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 8999999999999751 3 223345678887765
No 276
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.83 E-value=32 Score=28.99 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.2
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 456788899999887
No 277
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.78 E-value=33 Score=31.94 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=12.5
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999754
No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=22.37 E-value=48 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred hhhhHHHhhcCC---CcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQRT---KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G~---N~tIfAYGQTGSGKTyTM 304 (746)
.-+-++.+|.|- ...+.-+|.+|+|||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 445577888653 456889999999999766
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=22.17 E-value=48 Score=34.55 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.8
Q ss_pred hhHHHhhcC---CCcceeecccCCCCCcc
Q 004530 277 PIIPTIFQR---TKATCFAYGQTGSGKTF 302 (746)
Q Consensus 277 pLV~~vl~G---~N~tIfAYGQTGSGKTy 302 (746)
+-++.++.| ...+++-+|.+|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 445676654 35778899999999995
No 280
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.09 E-value=29 Score=37.35 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.3
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999983
No 281
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=22.07 E-value=33 Score=38.24 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=22.6
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.-|+-.+++..-.-|+-.|.+|+|||..+
T Consensus 14 ~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 14 LALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 34556666766667889999999999887
No 282
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=22.05 E-value=34 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=21.5
Q ss_pred hhhhHHHhhcC---CCcceeecccCCCCCcccc
Q 004530 275 VEPIIPTIFQR---TKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 275 v~pLV~~vl~G---~N~tIfAYGQTGSGKTyTM 304 (746)
+..++-.+|.| .-..+|.||..|+|||..+
T Consensus 61 l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 61 LQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 34444555555 3467999999999999876
No 283
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.00 E-value=55 Score=37.85 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=15.0
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999983
No 284
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=21.92 E-value=49 Score=39.28 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=31.3
Q ss_pred ceEEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCc
Q 004530 252 KHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKT 301 (746)
Q Consensus 252 ~~~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKT 301 (746)
...|+||.+.+....=.++-+ ++ .-+.+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccHH
Confidence 456999999887543222222 22 335789999999999999996
No 285
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=21.88 E-value=42 Score=41.37 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHhhcCCCcceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
+..+++|.|+.+. -+||||||.+.
T Consensus 45 i~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 45 AELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 4566799996554 58999999763
No 286
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.84 E-value=37 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.8
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 287
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=55 Score=39.64 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.3
Q ss_pred cceeecccCCCCCccccC-----------------------CCchhHHHHHHHHhcc
Q 004530 288 ATCFAYGQTGSGKTFTMQ-----------------------PLPLRAAEDLVRLLHQ 321 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~-----------------------Gl~~ra~~~LF~~i~~ 321 (746)
--|+.||+.|+|||.+.. |-..+++.++|+...+
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQ 525 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhh
Confidence 459999999999998752 4456788888887654
No 288
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.60 E-value=45 Score=38.11 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.5
Q ss_pred hhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 277 PIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 277 pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..|..+++|.++... -+||||||-+.
T Consensus 90 ~aiP~~L~g~dvIgl--AeTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGL--AETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEE--eccCCCchhhh
Confidence 346677889986544 59999999765
No 289
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=21.58 E-value=51 Score=37.93 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=24.2
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
-++.+-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 357778999999999999999999987
No 290
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=21.55 E-value=55 Score=38.67 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=27.5
Q ss_pred EEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 255 FCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 255 F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
-.|+.+++.+ .. ++.+...++......|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs----~~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQE----EG----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcH----HH----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4577776654 22 233333445566677888999999999754
No 291
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.32 E-value=40 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=20.7
Q ss_pred hHHHhhcCCCcceeecccCCCCCcccc
Q 004530 278 IIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 278 LV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|..++.+.+. ++..|..|+||||+|
T Consensus 354 Av~~il~s~~v-~vv~G~AGTGKTT~l 379 (988)
T PRK13889 354 ALAHVTDGRDL-GVVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHhcCCCe-EEEEeCCCCCHHHHH
Confidence 46677777765 458899999999988
No 292
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=21.22 E-value=54 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=19.7
Q ss_pred hhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 276 EPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 276 ~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
..++..+| |.|+-|.+ +||+|||+.-
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 34677788 99976554 9999999863
No 293
>PRK08233 hypothetical protein; Provisional
Probab=21.19 E-value=36 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.1
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+--|.+|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999765
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.00 E-value=34 Score=39.13 Aligned_cols=20 Identities=45% Similarity=0.463 Sum_probs=16.2
Q ss_pred cceeecccCCCCCccccCCC
Q 004530 288 ATCFAYGQTGSGKTFTMQPL 307 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~Gl 307 (746)
-.|+-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45678899999999998543
No 295
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.93 E-value=44 Score=40.48 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.0
Q ss_pred ceeecccCCCCCccccC
Q 004530 289 TCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM~ 305 (746)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999999885
No 296
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.91 E-value=35 Score=42.19 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=15.6
Q ss_pred cceeecccCCCCCccccC
Q 004530 288 ATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 288 ~tIfAYGQTGSGKTyTM~ 305 (746)
.+|.-.|++|+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467788999999999984
No 297
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=20.88 E-value=42 Score=41.54 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=27.7
Q ss_pred EeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCccccCCCch
Q 004530 256 CFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTMQPLPL 309 (746)
Q Consensus 256 ~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM~Gl~~ 309 (746)
.+|.+++.+.. +..+++-+.......++-||.+|+|||+...++..
T Consensus 184 ~~~~liGR~~e--------i~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 184 GIDPLIGREKE--------LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCcCcCCCHH--------HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 45667666532 33334333333334455699999999999866543
No 298
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.86 E-value=34 Score=39.38 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.1
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
...|...|.+|+|||.|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567888999999999994
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=20.82 E-value=66 Score=37.25 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.8
Q ss_pred CcceeecccCCCCCccccC
Q 004530 287 KATCFAYGQTGSGKTFTMQ 305 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~ 305 (746)
-..|+..|.+|+|||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999873
No 300
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=20.75 E-value=32 Score=35.51 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.4
Q ss_pred CcceeecccCCCCCccccCCCchhHHH
Q 004530 287 KATCFAYGQTGSGKTFTMQPLPLRAAE 313 (746)
Q Consensus 287 N~tIfAYGQTGSGKTyTM~Gl~~ra~~ 313 (746)
...|..||.+|.|||+...|+..|++.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 478999999999999999888877764
No 301
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=20.74 E-value=31 Score=30.99 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.0
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 677899999999766
No 302
>PRK06217 hypothetical protein; Validated
Probab=20.74 E-value=37 Score=33.79 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.8
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999999654
No 303
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.72 E-value=33 Score=31.07 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.0
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|..+|.+|+|||..|
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999865
No 304
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.71 E-value=59 Score=39.17 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 262 DERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 262 d~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.+...|+.+...+... .-......++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 4445566666544332 22333445789999999999764
No 305
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=20.60 E-value=36 Score=31.86 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.5
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999877
No 306
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.60 E-value=37 Score=40.08 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=14.0
Q ss_pred ceeecccCCCCCcccc
Q 004530 289 TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 289 tIfAYGQTGSGKTyTM 304 (746)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999865
No 307
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.59 E-value=38 Score=40.04 Aligned_cols=45 Identities=22% Similarity=0.519 Sum_probs=29.5
Q ss_pred EEEeeeeeCCCCChHHHHHhhhhhhHHHhhcCCCcceeecccCCCCCcccc
Q 004530 254 EFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 254 ~F~FD~VFd~~asQ~eVy~~~v~pLV~~vl~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|.||.+++....=+.+. ..+.. +...+..|+-+|.+||||++..
T Consensus 208 ~~~f~~iiG~S~~m~~~~-----~~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVR-----ALVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHH-----HHHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 477888877643222222 22322 3567889999999999999654
No 308
>PRK10865 protein disaggregation chaperone; Provisional
Probab=20.52 E-value=60 Score=40.72 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=0.0
Q ss_pred ChHHHHHhhhhhhHHHhhcCCC------cceeecccCCCCCccc
Q 004530 266 TNDEVYRVTVEPIIPTIFQRTK------ATCFAYGQTGSGKTFT 303 (746)
Q Consensus 266 sQ~eVy~~~v~pLV~~vl~G~N------~tIfAYGQTGSGKTyT 303 (746)
.|..+-+ .+...|..+..|.. +.++-+|++|+|||++
T Consensus 572 GQ~~ai~-~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 572 GQNEAVE-AVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred CCHHHHH-HHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHH
No 309
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=20.39 E-value=59 Score=35.44 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=22.4
Q ss_pred ChHHHHHhhhhhhHHHhhcCC-CcceeecccCCCCCcccc
Q 004530 266 TNDEVYRVTVEPIIPTIFQRT-KATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 266 sQ~eVy~~~v~pLV~~vl~G~-N~tIfAYGQTGSGKTyTM 304 (746)
.|+++.+. +...+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~----l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQT----LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 45555442 333333454 346789999999999776
No 310
>PHA02624 large T antigen; Provisional
Probab=20.21 E-value=62 Score=39.10 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.7
Q ss_pred HHHhhcCCCc--ceeecccCCCCCcccc
Q 004530 279 IPTIFQRTKA--TCFAYGQTGSGKTFTM 304 (746)
Q Consensus 279 V~~vl~G~N~--tIfAYGQTGSGKTyTM 304 (746)
+..++.|..- ||+-||+.|||||+-.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5666777555 9999999999999654
No 311
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.20 E-value=44 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred cCCCcceeecccCCCCCcccc
Q 004530 284 QRTKATCFAYGQTGSGKTFTM 304 (746)
Q Consensus 284 ~G~N~tIfAYGQTGSGKTyTM 304 (746)
.|..-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999755
No 312
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=20.19 E-value=34 Score=34.23 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=12.5
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999988
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=20.06 E-value=34 Score=34.38 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=12.3
Q ss_pred eeecccCCCCCcccc
Q 004530 290 CFAYGQTGSGKTFTM 304 (746)
Q Consensus 290 IfAYGQTGSGKTyTM 304 (746)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999765
No 314
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=20.05 E-value=30 Score=35.94 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.9
Q ss_pred cccCCCCCcccc
Q 004530 293 YGQTGSGKTFTM 304 (746)
Q Consensus 293 YGQTGSGKTyTM 304 (746)
-|.+|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999988
Done!