BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004533
(746 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 125/293 (42%), Gaps = 51/293 (17%)
Query: 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGP 61
W I K G + I YVFWN HEP++G+YDF+G+ DI F + Q G YV +R GP
Sbjct: 39 WEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGP 98
Query: 62 FIESEWTYGGLPIWLHDVAGIVFRSDNKPY-----------------------------K 92
++ +EW GGLP WL I R + Y +
Sbjct: 99 YVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLADLQISKGGNIIXVQ 158
Query: 93 IENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVPWVMCK-----QDDAPGPV---INAC 144
+ENEY AF P + TGVP C +++A + IN
Sbjct: 159 VENEYG----AFGIDKPYISEIRDXVKQAGFTGVPLFQCDWNSNFENNALDDLLWTINFG 214
Query: 145 NGMRCGETFKGPNS--PNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHVALFIAKNGSY 202
G E FK P+ P +E W+ ++ WG K RSA+++ + +N S+
Sbjct: 215 TGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF 274
Query: 203 VNYYMYHGGTNFGRTAAAFM------ITGYYDQAPLDEYGLVREPKWGHLKEL 249
+ Y HGGT+FG A T Y AP++E G V PK+ ++ L
Sbjct: 275 -SLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 519 QLTWYKTTFRAPAGNDPIALNLQSMGKGEAWVNGQSIGRYWVSFKTSKGNPSQTQYA 575
Q +Y++TF D LN + KG WVNG +IGRYW + P QT Y
Sbjct: 507 QPAYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYW------EIGPQQTLYV 556
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 120/282 (42%), Gaps = 44/282 (15%)
Query: 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGP 61
W + K K GL+ IQTYV WN HEP GQY FS +D+ F++ GL V LR GP
Sbjct: 42 WKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGP 101
Query: 62 FIESEWTYGGLPIWLHDVAGIVFRSDNKPYKIENE------YQTIEPAFHEKGPPYVL-- 113
+I +EW GGLP WL + I+ RS + Y + ++P ++ G P +
Sbjct: 102 YICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQ 161
Query: 114 ----WAAKMAVDF------------HTGVPWVMCKQDDAPGPVIN--ACNGMRCGETF-K 154
+ + A DF H G V+ D A + A G+ F
Sbjct: 162 VENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGT 221
Query: 155 GPN-----------SPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHVALFIAKNGSYV 203
G N P P I +E +T + WG + +A + +A+ G+ V
Sbjct: 222 GSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILAR-GASV 280
Query: 204 NYYMYHGGTNF-----GRTAAAFMITGYYDQAPLDEYGLVRE 240
N YM+ GGTNF + A T Y APL E G + E
Sbjct: 281 NLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTE 322
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 522 WYKTTFRAPAG--NDPIALNLQSMG--KGEAWVNGQSIGRYW 559
+Y F P+G + P +Q G KG+ W+NG ++GRYW
Sbjct: 528 FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYW 569
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 114/292 (39%), Gaps = 69/292 (23%)
Query: 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGP 61
W + K G + ++TYV WNLHEP +G++ F G D+ +F++ Q GLY +R P
Sbjct: 34 WYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDLDLEKFLQIAQDLGLYAIVRPSP 93
Query: 62 FIESEWTYGGLPIWLHDVAGIVFRSDNKPY-----------------------------K 92
FI +EW +GGLP WL + RS + Y +
Sbjct: 94 FICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYYDQLLPRLVPRLLDNGGNILMMQ 152
Query: 93 IENEY--------------QTIE------PAFHEKGPPYVLWAAKMAVDFHTGVPWVMCK 132
+ENEY Q +E P F GP W A + +
Sbjct: 153 VENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGP----WRATLKAGTLIEEDLFVTG 208
Query: 133 QDDAPGPVINACNGMRCGETFKGPNSPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHV 192
+ P N + E F + P + E W ++ W R +++A V
Sbjct: 209 NFGSKAPY----NFSQMQEFFD-EHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAV 263
Query: 193 ALFIAKNGSYVNYYMYHGGTNFG--------RTAAAFMITGYYDQAPLDEYG 236
+ + GS +N YM+HGGTNFG T +T Y A LDE G
Sbjct: 264 RE-VLEQGS-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEEG 313
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 538 LNLQSMGKGEAWVNGQSIGRYW 559
L+L GKG A+VNGQ++GR+W
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFW 544
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 110/313 (35%), Gaps = 67/313 (21%)
Query: 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60
++ + K K G + + YV W L E G Y G D+ F + G+Y+ R G
Sbjct: 37 LYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPG 96
Query: 61 PFIESEWTYGGLPIWLHDVAGIVFRSDNKPYKIENEY-----QTIEPAFHEKGPPYVLWA 115
P+I +E + GG P WL V GI+ SD K + Y TI A G P +L+
Sbjct: 97 PYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNGGPIILYQ 156
Query: 116 ------------------------------AKMAVDFHTGVPWVMCKQDDAPGPVINACN 145
A + V F + W +APG A +
Sbjct: 157 PENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGH--NAPGTGAGAVD 214
Query: 146 ---------GMRCGETFKGPN--------------SPNKPSIWTEDWTSFYQVWGGKPYI 182
G C P+ SP+ P E + WGG +
Sbjct: 215 IYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFA 274
Query: 183 RSAQDIAFHVALFIAKNG-----SYVNYYMYHGGTNFGRTAAAFMITGY-YDQAPLDEYG 236
+ A + KN +++N YM GGTN+G T Y Y A +
Sbjct: 275 KCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRN 334
Query: 237 LVREPKWGHLKEL 249
+ RE K+ LK L
Sbjct: 335 ITRE-KYSELKLL 346
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60
++ + K K G + + YV W L E + G++ G + F + G+Y+ R G
Sbjct: 57 LYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPG 116
Query: 61 PFIESEWTYGGLPIWLHDVAGIVFRSDNKPY 91
P+I +E + GG P WL V G + R+D Y
Sbjct: 117 PYINAEVSGGGFPGWLQRVKGKL-RTDAPDY 146
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 683 SFGNPDGDCERYAVGSCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDPCPGIHKALLVD 742
S G PD + +C S S + C GKS C +P S + GDPC G +K L
Sbjct: 36 SIGRPD---NQLTDTNCLSQSSTSKMAERCGGKSECIVP-ASNFVFGDPCVGTYKYLDTK 91
Query: 743 AQC 745
C
Sbjct: 92 YSC 94
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 698 SCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDPCPGIHKALLVDAQC 745
+C S + + C GK +C + + + FG DPC G +K L V C
Sbjct: 148 NCLSQSTTSKMAERCDGKRQCIVKVSNSVFG-DPCVGTYKYLDVAYTC 194
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 639 HLPPLSSWLRHRQRGDTDI-------KKFGKKPTVQPSCPLGKKISKIVFASFG 685
H+ PL +R + D + KK GK P V CP G +++++F FG
Sbjct: 457 HMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP-GFLVNRVLFPYFG 509
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 2 WPSLIAKA----KEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57
WPS AK ++ G + +Q + W EP +GQ+DFS + ++ +E + + V L
Sbjct: 71 WPSQXAKVWPAIEKVGANTVQVPIAWEQIEPVEGQFDFSYLDLLLEQARERKVR--LVLL 128
Query: 58 RIGPFIESEWTYGGLPIWL 76
G + S +Y P W+
Sbjct: 129 WFGTWKNSSPSYA--PEWV 145
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 666 VQPSCPLGKKISKIVFASFGNPDG---DCERYAVGS--CHSSHSQGVVERACIGKSRCSI 720
++ CP G + + A++G D D + + + + C+ + ++ + C +++C +
Sbjct: 18 IELRCP-GSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVV 76
Query: 721 PLLSRYFGGDPCPGIHKALLVDAQC 745
S F DPCPG +K L V C
Sbjct: 77 VAGSDAFP-DPCPGTYKYLEVQYDC 100
>pdb|4I78|A Chain A, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
pdb|4I78|B Chain B, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
Length = 328
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 346 FDSDEKWEEYREAILNFDNTLLRAEGLLDQISAAKDASDYFWYTFRFHYNSSNAQAPLDV 405
F+ EK EE+R I G D+I A +D DY+W + AQ+ L +
Sbjct: 201 FNFGEKSEEFRPDI-----------GQRDEIKAHQDRIDYYWGSLP-------AQSTLRI 242
Query: 406 QSHGHIL 412
+S G+++
Sbjct: 243 ESTGNLI 249
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 350 EKWEEYREAILNFDNTLLRAEGLL-DQISAAKDASDYFWYTFRFHYNSSNA 399
EK+ EY + N D+ G+ D I K+A+DYF + +YN +NA
Sbjct: 28 EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA 78
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 124 TGVPWVMCKQDDAPGPVINACNGMRCGETFKGPNSP 159
G+ W CKQ PG V+ AC+ + T GP +P
Sbjct: 225 VGLSWEECKQRCPPG-VVPACHNSKDTVTISGPQAP 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,190,041
Number of Sequences: 62578
Number of extensions: 1076509
Number of successful extensions: 2299
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2279
Number of HSP's gapped (non-prelim): 25
length of query: 746
length of database: 14,973,337
effective HSP length: 106
effective length of query: 640
effective length of database: 8,340,069
effective search space: 5337644160
effective search space used: 5337644160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)