Query 004533
Match_columns 746
No_of_seqs 315 out of 1703
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-186 4E-191 1603.7 61.5 714 1-746 60-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 7E-133 1E-137 1117.5 32.4 566 1-638 50-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 6.1E-71 1.3E-75 595.2 10.9 245 1-252 25-318 (319)
4 COG1874 LacA Beta-galactosidas 99.9 9.1E-27 2E-31 268.9 6.9 233 1-238 31-332 (673)
5 PF02140 Gal_Lectin: Galactose 99.8 1.6E-20 3.5E-25 163.6 5.0 76 668-745 1-80 (80)
6 KOG4729 Galactoside-binding le 99.8 5.3E-19 1.1E-23 181.0 7.7 86 660-746 40-130 (265)
7 PF02449 Glyco_hydro_42: Beta- 99.5 2.5E-14 5.3E-19 158.4 10.3 234 1-255 11-373 (374)
8 PF13364 BetaGal_dom4_5: Beta- 99.0 9.9E-10 2.1E-14 101.9 6.5 69 518-612 34-105 (111)
9 PF13364 BetaGal_dom4_5: Beta- 98.6 1.5E-07 3.4E-12 87.3 8.8 84 373-457 24-110 (111)
10 PF02837 Glyco_hydro_2_N: Glyc 97.9 4.4E-05 9.6E-10 74.8 8.6 95 380-476 64-163 (167)
11 TIGR03356 BGL beta-galactosida 97.0 0.00074 1.6E-08 76.8 5.0 101 1-129 55-156 (427)
12 PF00150 Cellulase: Cellulase 96.9 0.0011 2.5E-08 69.4 5.6 57 3-59 24-82 (281)
13 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.0019 4.1E-08 63.2 6.1 66 518-611 67-136 (167)
14 PLN02801 beta-amylase 96.8 0.0021 4.6E-08 73.0 7.0 111 3-121 40-171 (517)
15 PLN02161 beta-amylase 96.5 0.0052 1.1E-07 70.0 7.2 113 3-122 120-252 (531)
16 PF01373 Glyco_hydro_14: Glyco 96.4 0.0029 6.2E-08 70.7 4.1 73 3-78 19-96 (402)
17 PLN02905 beta-amylase 96.3 0.013 2.9E-07 68.0 9.0 76 3-82 289-374 (702)
18 PLN00197 beta-amylase; Provisi 96.3 0.0073 1.6E-07 69.4 6.9 112 3-122 130-262 (573)
19 PLN02705 beta-amylase 96.2 0.0066 1.4E-07 70.2 5.9 74 3-82 271-356 (681)
20 PRK10150 beta-D-glucuronidase; 95.9 0.025 5.5E-07 67.1 9.3 73 381-455 62-137 (604)
21 PRK09525 lacZ beta-D-galactosi 95.9 0.034 7.4E-07 69.8 10.5 89 383-476 119-215 (1027)
22 PRK10340 ebgA cryptic beta-D-g 95.9 0.026 5.6E-07 70.9 9.3 89 383-476 108-203 (1021)
23 PF02836 Glyco_hydro_2_C: Glyc 95.7 0.04 8.7E-07 59.4 8.9 107 2-133 38-159 (298)
24 PLN02803 beta-amylase 95.6 0.018 3.9E-07 66.0 6.0 76 3-82 110-195 (548)
25 PF00232 Glyco_hydro_1: Glycos 95.5 0.01 2.2E-07 68.1 3.6 70 1-78 59-130 (455)
26 smart00633 Glyco_10 Glycosyl h 95.0 0.015 3.4E-07 61.4 2.7 101 23-132 3-125 (254)
27 PRK09852 cryptic 6-phospho-bet 94.6 0.039 8.5E-07 63.7 5.1 103 1-130 72-177 (474)
28 PF14488 DUF4434: Domain of un 94.4 0.094 2E-06 52.3 6.4 57 2-60 22-86 (166)
29 PRK15014 6-phospho-beta-glucos 93.8 0.086 1.9E-06 61.0 5.7 70 1-78 70-141 (477)
30 PRK10340 ebgA cryptic beta-D-g 93.0 0.22 4.7E-06 62.8 7.8 41 518-558 108-151 (1021)
31 PRK13511 6-phospho-beta-galact 92.9 0.14 3.1E-06 59.0 5.6 101 1-130 55-157 (469)
32 PF03198 Glyco_hydro_72: Gluca 92.8 0.16 3.4E-06 55.3 5.3 46 2-60 55-100 (314)
33 PLN02814 beta-glucosidase 92.7 0.13 2.8E-06 59.9 5.0 103 1-130 78-182 (504)
34 PLN02998 beta-glucosidase 92.7 0.13 2.8E-06 59.9 4.8 104 1-131 83-188 (497)
35 TIGR01233 lacG 6-phospho-beta- 92.7 0.16 3.6E-06 58.6 5.7 101 1-130 54-156 (467)
36 PRK09593 arb 6-phospho-beta-gl 92.6 0.16 3.5E-06 58.8 5.5 103 1-130 74-179 (478)
37 PRK10150 beta-D-glucuronidase; 92.4 0.33 7.1E-06 57.8 7.9 42 518-559 64-108 (604)
38 PRK09589 celA 6-phospho-beta-g 92.1 0.19 4.1E-06 58.2 5.3 104 1-131 68-174 (476)
39 smart00642 Aamy Alpha-amylase 91.3 0.54 1.2E-05 46.8 6.8 64 2-65 21-96 (166)
40 PLN02849 beta-glucosidase 91.1 0.26 5.7E-06 57.5 5.0 103 1-130 80-184 (503)
41 PRK09525 lacZ beta-D-galactosi 91.1 0.42 9.1E-06 60.4 7.1 40 518-557 119-162 (1027)
42 COG2730 BglC Endoglucanase [Ca 90.8 0.31 6.8E-06 55.3 5.2 55 3-58 76-135 (407)
43 COG2723 BglB Beta-glucosidase/ 89.3 0.49 1.1E-05 54.2 5.1 70 1-78 60-131 (460)
44 PF14871 GHL6: Hypothetical gl 87.7 1.8 3.9E-05 41.7 7.1 72 4-80 4-84 (132)
45 PF07745 Glyco_hydro_53: Glyco 85.9 1.2 2.6E-05 49.3 5.5 51 3-59 27-78 (332)
46 PF00128 Alpha-amylase: Alpha 85.3 1.2 2.7E-05 46.7 5.1 57 3-59 7-72 (316)
47 PLN02447 1,4-alpha-glucan-bran 83.4 2.1 4.6E-05 52.2 6.5 58 2-59 253-320 (758)
48 PRK09936 hypothetical protein; 82.6 2.5 5.4E-05 45.8 6.0 51 2-58 40-91 (296)
49 COG3250 LacZ Beta-galactosidas 82.5 1.4 3.1E-05 54.1 4.7 75 3-98 324-408 (808)
50 COG3693 XynA Beta-1,4-xylanase 80.6 1.6 3.5E-05 47.8 3.7 104 21-133 67-194 (345)
51 TIGR01515 branching_enzym alph 80.3 3.8 8.2E-05 49.1 7.1 56 4-59 160-226 (613)
52 TIGR02402 trehalose_TreZ malto 79.5 3.7 8E-05 48.5 6.6 56 4-59 115-180 (542)
53 PRK09441 cytoplasmic alpha-amy 78.3 4.2 9.1E-05 47.1 6.5 56 4-59 26-101 (479)
54 TIGR02403 trehalose_treC alpha 77.1 3.9 8.4E-05 48.3 5.8 55 3-59 30-95 (543)
55 PF13204 DUF4038: Protein of u 76.6 6.2 0.00013 42.8 6.8 115 2-123 32-177 (289)
56 PLN02960 alpha-amylase 75.5 6 0.00013 49.0 6.9 56 4-59 421-486 (897)
57 COG3867 Arabinogalactan endo-1 75.1 6.8 0.00015 42.7 6.3 56 3-59 66-124 (403)
58 PRK12313 glycogen branching en 75.1 6.2 0.00013 47.5 6.9 54 6-59 177-240 (633)
59 PRK05402 glycogen branching en 72.9 7.3 0.00016 47.7 6.9 53 6-58 272-334 (726)
60 PRK10933 trehalose-6-phosphate 72.8 7.4 0.00016 46.1 6.7 54 3-59 36-101 (551)
61 PF00331 Glyco_hydro_10: Glyco 71.9 3.2 7E-05 45.6 3.2 65 6-79 27-93 (320)
62 PRK12568 glycogen branching en 71.5 8.2 0.00018 47.1 6.7 55 5-59 275-339 (730)
63 TIGR02104 pulA_typeI pullulana 71.3 6.3 0.00014 47.1 5.7 55 4-59 168-249 (605)
64 PF02638 DUF187: Glycosyl hydr 71.1 9.2 0.0002 42.0 6.5 54 3-59 22-90 (311)
65 PRK09505 malS alpha-amylase; R 70.6 9.5 0.00021 46.4 7.0 57 3-59 233-312 (683)
66 PRK14706 glycogen branching en 70.5 8.5 0.00019 46.4 6.6 53 7-59 175-237 (639)
67 TIGR02456 treS_nterm trehalose 68.9 7.4 0.00016 45.9 5.5 56 2-59 30-96 (539)
68 cd04908 ACT_Bt0572_1 N-termina 68.5 11 0.00023 31.2 4.9 50 4-57 17-66 (66)
69 PRK14705 glycogen branching en 68.3 10 0.00022 48.9 6.8 53 6-58 772-834 (1224)
70 PRK10785 maltodextrin glucosid 67.7 11 0.00025 44.9 6.9 57 3-59 182-246 (598)
71 PF13200 DUF4015: Putative gly 67.6 19 0.00042 39.7 8.1 115 3-127 16-141 (316)
72 PF13199 Glyco_hydro_66: Glyco 64.9 14 0.00031 43.8 6.8 76 3-78 121-211 (559)
73 PF06832 BiPBP_C: Penicillin-B 63.9 12 0.00025 33.1 4.5 49 402-458 35-84 (89)
74 TIGR02401 trehalose_TreY malto 63.9 16 0.00034 45.3 7.1 60 2-61 18-87 (825)
75 PLN02361 alpha-amylase 62.2 18 0.0004 41.2 6.8 55 4-58 33-95 (401)
76 cd06593 GH31_xylosidase_YicI Y 61.6 17 0.00037 39.5 6.3 64 3-66 27-93 (308)
77 COG0296 GlgB 1,4-alpha-glucan 61.5 20 0.00044 43.0 7.2 55 4-58 169-233 (628)
78 PF14683 CBM-like: Polysacchar 61.3 13 0.00029 37.1 4.9 61 542-616 91-154 (167)
79 PF11875 DUF3395: Domain of un 61.0 6.9 0.00015 38.6 2.8 65 679-745 55-133 (151)
80 KOG4729 Galactoside-binding le 60.1 14 0.0003 39.5 4.9 85 659-745 138-230 (265)
81 PRK14510 putative bifunctional 59.9 14 0.00031 47.8 6.0 56 4-59 191-267 (1221)
82 PRK13210 putative L-xylulose 5 59.1 14 0.00031 39.0 5.0 52 2-56 18-69 (284)
83 PF01791 DeoC: DeoC/LacD famil 58.4 4.4 9.6E-05 42.3 1.0 51 5-58 81-131 (236)
84 PF08531 Bac_rhamnosid_N: Alph 58.3 35 0.00076 34.1 7.3 87 402-489 7-113 (172)
85 PRK14511 maltooligosyl trehalo 57.9 24 0.00051 44.1 7.1 57 2-61 22-91 (879)
86 KOG2024 Beta-Glucuronidase GUS 56.9 15 0.00032 39.4 4.5 57 369-425 70-134 (297)
87 PRK14507 putative bifunctional 56.8 23 0.00049 47.2 7.0 60 2-61 760-829 (1693)
88 PF05913 DUF871: Bacterial pro 56.2 12 0.00026 42.0 4.0 55 3-63 17-71 (357)
89 PF08308 PEGA: PEGA domain; I 55.5 11 0.00024 31.6 2.8 38 403-450 4-41 (71)
90 cd06592 GH31_glucosidase_KIAA1 53.9 32 0.00068 37.5 6.7 61 3-66 33-97 (303)
91 PF11324 DUF3126: Protein of u 53.3 29 0.00063 29.4 4.8 32 407-438 25-58 (63)
92 PLN00196 alpha-amylase; Provis 52.7 33 0.00073 39.4 6.9 57 3-59 47-112 (428)
93 TIGR03234 OH-pyruv-isom hydrox 52.5 26 0.00056 36.6 5.6 42 2-57 16-57 (254)
94 TIGR02102 pullulan_Gpos pullul 52.0 24 0.00051 45.3 6.0 22 38-59 554-575 (1111)
95 PRK01060 endonuclease IV; Prov 51.1 29 0.00063 36.8 5.8 50 2-55 14-63 (281)
96 COG1306 Uncharacterized conser 50.9 28 0.00061 38.1 5.5 54 3-59 80-144 (400)
97 PRK03705 glycogen debranching 50.8 26 0.00056 42.5 5.9 55 5-59 184-262 (658)
98 TIGR00542 hxl6Piso_put hexulos 50.2 24 0.00052 37.5 5.0 52 2-56 18-69 (279)
99 TIGR02100 glgX_debranch glycog 49.6 28 0.0006 42.5 5.9 55 5-59 189-265 (688)
100 PLN03059 beta-galactosidase; P 48.0 65 0.0014 40.1 8.6 71 518-616 469-548 (840)
101 TIGR00433 bioB biotin syntheta 46.9 32 0.0007 36.8 5.4 52 3-58 123-177 (296)
102 cd06591 GH31_xylosidase_XylS X 45.9 38 0.00083 37.2 5.8 62 3-65 27-92 (319)
103 cd06589 GH31 The enzymes of gl 45.8 34 0.00074 36.4 5.3 60 3-63 27-90 (265)
104 COG0366 AmyA Glycosidases [Car 45.1 32 0.0007 39.2 5.3 55 4-58 33-96 (505)
105 PF02228 Gag_p19: Major core p 44.2 13 0.00028 32.7 1.5 26 26-54 34-59 (92)
106 PF08531 Bac_rhamnosid_N: Alph 44.1 23 0.0005 35.3 3.5 57 537-612 7-63 (172)
107 cd06598 GH31_transferase_CtsZ 44.0 42 0.0009 36.8 5.8 64 3-66 27-97 (317)
108 TIGR02455 TreS_stutzeri trehal 42.7 68 0.0015 38.8 7.5 73 6-78 80-177 (688)
109 PF01055 Glyco_hydro_31: Glyco 42.6 54 0.0012 37.4 6.6 65 3-68 46-112 (441)
110 TIGR01531 glyc_debranch glycog 41.7 46 0.00099 43.5 6.2 85 2-92 134-233 (1464)
111 TIGR03849 arch_ComA phosphosul 41.5 57 0.0012 34.7 6.0 48 3-60 74-121 (237)
112 cd06603 GH31_GANC_GANAB_alpha 41.4 46 0.001 36.8 5.6 63 3-66 27-91 (339)
113 TIGR02631 xylA_Arthro xylose i 40.7 52 0.0011 37.3 6.0 48 3-57 35-86 (382)
114 COG1649 Uncharacterized protei 40.3 60 0.0013 37.3 6.4 61 3-65 67-141 (418)
115 PF02679 ComA: (2R)-phospho-3- 40.3 44 0.00096 35.7 5.0 48 3-60 87-134 (244)
116 cd06599 GH31_glycosidase_Aec37 39.7 63 0.0014 35.4 6.3 64 3-66 32-100 (317)
117 PRK09989 hypothetical protein; 39.7 52 0.0011 34.6 5.5 42 2-57 17-58 (258)
118 PF03659 Glyco_hydro_71: Glyco 39.5 64 0.0014 36.7 6.4 50 2-60 19-68 (386)
119 PLN02389 biotin synthase 37.2 48 0.001 37.5 5.0 51 3-56 178-230 (379)
120 cd06602 GH31_MGAM_SI_GAA This 37.0 60 0.0013 36.1 5.7 63 3-66 27-93 (339)
121 KOG0496 Beta-galactosidase [Ca 36.8 9 0.0002 45.7 -0.8 79 630-728 312-390 (649)
122 TIGR02103 pullul_strch alpha-1 36.2 70 0.0015 40.3 6.6 21 39-59 404-424 (898)
123 COG1891 Uncharacterized protei 35.8 14 0.00031 37.3 0.5 28 31-58 159-186 (235)
124 cd06600 GH31_MGAM-like This fa 35.5 67 0.0014 35.3 5.7 62 3-65 27-90 (317)
125 PRK09997 hydroxypyruvate isome 35.5 67 0.0015 33.7 5.5 42 2-57 17-58 (258)
126 PLN02784 alpha-amylase 35.2 63 0.0014 40.4 5.8 56 3-58 524-587 (894)
127 cd06595 GH31_xylosidase_XylS-l 35.1 74 0.0016 34.5 5.9 62 3-64 28-99 (292)
128 PRK13209 L-xylulose 5-phosphat 33.7 64 0.0014 34.2 5.1 52 2-56 23-74 (283)
129 PF01261 AP_endonuc_2: Xylose 33.2 31 0.00067 34.0 2.4 46 6-58 1-46 (213)
130 PRK09856 fructoselysine 3-epim 32.9 89 0.0019 32.9 6.0 51 2-57 15-65 (275)
131 PRK07094 biotin synthase; Prov 32.8 45 0.00098 36.3 3.8 50 3-55 129-181 (323)
132 cd00019 AP2Ec AP endonuclease 32.7 1E+02 0.0022 32.7 6.4 53 2-58 12-65 (279)
133 PRK12677 xylose isomerase; Pro 32.6 98 0.0021 35.1 6.5 49 2-56 33-84 (384)
134 COG1523 PulA Type II secretory 32.3 75 0.0016 38.9 5.8 54 5-58 205-284 (697)
135 PLN02877 alpha-amylase/limit d 32.2 93 0.002 39.5 6.7 21 39-59 466-486 (970)
136 KOG0683 Glutamine synthetase [ 30.8 51 0.0011 37.0 3.7 44 27-71 203-258 (380)
137 TIGR03700 mena_SCO4494 putativ 30.4 44 0.00095 37.2 3.3 51 3-56 150-205 (351)
138 TIGR03551 F420_cofH 7,8-dideme 30.1 46 0.001 36.8 3.4 50 3-56 141-196 (343)
139 cd06604 GH31_glucosidase_II_Ma 29.5 92 0.002 34.4 5.6 63 3-66 27-91 (339)
140 PRK08599 coproporphyrinogen II 29.4 51 0.0011 36.9 3.6 49 3-54 100-151 (377)
141 PF07691 PA14: PA14 domain; I 26.4 3.2E+02 0.0069 25.4 8.0 70 385-456 47-122 (145)
142 cd06594 GH31_glucosidase_YihQ 26.2 1.5E+02 0.0033 32.5 6.5 64 3-66 26-98 (317)
143 cd04882 ACT_Bt0572_2 C-termina 26.0 80 0.0017 25.2 3.3 50 4-55 15-64 (65)
144 cd06565 GH20_GcnA-like Glycosy 26.0 1.3E+02 0.0028 32.9 5.9 53 3-58 20-79 (301)
145 TIGR01210 conserved hypothetic 25.8 90 0.002 34.3 4.6 52 3-58 117-174 (313)
146 COG2884 FtsE Predicted ATPase 25.3 52 0.0011 34.2 2.4 23 665-688 135-157 (223)
147 PRK05660 HemN family oxidoredu 24.3 76 0.0016 35.7 3.8 49 3-55 107-159 (378)
148 PRK09856 fructoselysine 3-epim 24.2 1E+02 0.0023 32.3 4.7 57 2-62 92-153 (275)
149 TIGR03699 mena_SCO4550 menaqui 24.1 59 0.0013 35.8 2.8 50 3-55 143-197 (340)
150 COG3623 SgaU Putative L-xylulo 24.0 63 0.0014 34.4 2.8 48 2-54 20-69 (287)
151 PF01261 AP_endonuc_2: Xylose 23.8 88 0.0019 30.7 3.8 61 3-64 74-137 (213)
152 smart00481 POLIIIAc DNA polyme 23.0 2.6E+02 0.0057 22.8 5.9 44 2-58 17-60 (67)
153 PRK05265 pyridoxine 5'-phospha 22.9 91 0.002 33.2 3.8 44 4-65 117-161 (239)
154 PRK08208 coproporphyrinogen II 22.9 87 0.0019 35.9 4.0 50 3-56 141-194 (430)
155 cd06601 GH31_lyase_GLase GLase 22.6 1.5E+02 0.0033 32.9 5.7 61 3-64 27-89 (332)
156 cd02742 GH20_hexosaminidase Be 21.3 1.7E+02 0.0036 31.9 5.6 53 3-58 19-91 (303)
157 cd06412 GH25_CH-type CH-type ( 21.2 2.3E+02 0.0049 28.8 6.2 79 2-81 41-162 (199)
158 PRK15108 biotin synthase; Prov 20.9 1.4E+02 0.0031 33.2 5.1 46 3-55 136-187 (345)
159 PF14701 hDGE_amylase: glucano 20.8 1.6E+02 0.0034 34.0 5.4 57 2-58 24-96 (423)
160 PRK08508 biotin synthase; Prov 20.8 1.6E+02 0.0034 31.8 5.2 45 3-55 102-153 (279)
161 cd01299 Met_dep_hydrolase_A Me 20.7 2.1E+02 0.0045 31.0 6.2 56 3-59 123-180 (342)
162 PRK06256 biotin synthase; Vali 20.5 1.1E+02 0.0023 33.7 3.9 45 3-55 152-203 (336)
163 PRK10658 putative alpha-glucos 20.5 1.7E+02 0.0038 35.7 6.0 63 3-65 286-351 (665)
164 PRK13210 putative L-xylulose 5 20.0 1.5E+02 0.0032 31.2 4.8 58 2-60 96-154 (284)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.8e-186 Score=1603.71 Aligned_cols=714 Identities=50% Similarity=0.921 Sum_probs=652.3
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeecC
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDVA 80 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~p 80 (746)
+|+|||+||||||||||+||||||+|||+||+|||+|++||++||++|+|+||+|||||||||||||++||||.||++.|
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~ 139 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVP 139 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCce-------------------------------eeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcceE
Q 004533 81 GIVFRSDNKPYK-------------------------------IENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVPWV 129 (746)
Q Consensus 81 ~~~~Rt~~~~y~-------------------------------iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP~~ 129 (746)
+|++||+|++|+ ||||||++.+.++.+|++||+||++|++++|++|||+
T Consensus 140 ~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~ 219 (840)
T PLN03059 140 GIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWV 219 (840)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceE
Confidence 999999999988 9999999876777789999999999999999999999
Q ss_pred EecCCCCCCCcccCCCCCccCCCCCCCCCCCCCceeeccccccccccCCCCccCCHHHHHHHHHHHHHhCCeeeeeeeec
Q 004533 130 MCKQDDAPGPVINACNGMRCGETFKGPNSPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHVALFIAKNGSYVNYYMYH 209 (746)
Q Consensus 130 ~~~~~~~~~~~i~t~ng~~~~~~~~~~~~p~~P~~~tE~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~N~YM~h 209 (746)
||++.+++++++++|||.+| +.|. +.++.+|+||+|||+|||++||+++++|+++|++.+++++|++|+|++||||||
T Consensus 220 t~dg~~~~~~v~~t~Ng~~~-~~f~-~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfh 297 (840)
T PLN03059 220 MCKQEDAPDPVIDTCNGFYC-ENFK-PNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYH 297 (840)
T ss_pred ECCCCCCCccceecCCCchh-hhcc-cCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeecc
Confidence 99998888889999999988 6675 566678999999999999999999999999999999999999999988999999
Q ss_pred CccCCCCCCCC-ccccccCCCCCCCcCCCCCChhHHHHHHHHHHHhhccCCCCCCccccccCCCcceeeEeeccccceee
Q 004533 210 GGTNFGRTAAA-FMITGYYDQAPLDEYGLVREPKWGHLKELHAAIKLCSRPLLTGTQNVISLGQLQEAFVFEETSGVCAA 288 (746)
Q Consensus 210 GGTNfG~~~g~-~~~TSYDY~APL~E~G~~~tpKy~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~ 288 (746)
||||||+|+|+ +++|||||||||+|+|++++|||.+||++|++++.+++.|+..+|....+|+.+++.+|...+ .|++
T Consensus 298 GGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caa 376 (840)
T PLN03059 298 GGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAA 376 (840)
T ss_pred CcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhh
Confidence 99999999998 599999999999999999668999999999999999888888888888899999999998766 7999
Q ss_pred eeeccCccceeEEEEcceeeecCCceeeecCCCCccccccceeeccccccccccCcccCChhhhhHhhhh-hcccCcccc
Q 004533 289 FLVNNDERKAVTVLFRNISYELPRKSISILPDCKTVAFNTERVSTQYNKRSKTSNLKFDSDEKWEEYREA-ILNFDNTLL 367 (746)
Q Consensus 289 fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~ 367 (746)
|+.|.+.+.+.+|+|++++|.||+|||+|||||+.++|||+++.+|.+.+.+++... .+.|+.+.|+ .....+.++
T Consensus 377 Fl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~---~~~w~~~~e~~~~~~~~~~~ 453 (840)
T PLN03059 377 FLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGS---TFSWQSYNEETASAYTDDTT 453 (840)
T ss_pred heeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccccc---cccceeecccccccccCCCc
Confidence 999999888999999999999999999999999999999999998877665443322 3589999998 444444567
Q ss_pred ccccchhhhccCCCCCceEEEEEEeecCCCC------CCCceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeec
Q 004533 368 RAEGLLDQISAAKDASDYFWYTFRFHYNSSN------AQAPLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHL 441 (746)
Q Consensus 368 ~~p~~~Eql~~t~d~~gy~~Y~t~~~~~~~~------~~~~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l 441 (746)
++..++||++.|+|.+||+||+|+|....++ .+.+|+|.+++|++||||||+++|+.++++....++++.++.+
T Consensus 454 ~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l 533 (840)
T PLN03059 454 TMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKL 533 (840)
T ss_pred chhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEeccccc
Confidence 7788899999999999999999999765432 3456999999999999999999999999877778888888889
Q ss_pred cCCCceEEEEEecCCCccccccccccccceeE-EEECC-----eecccCCceEeeccCcchhhccccCCcccccccccCC
Q 004533 442 RQGTNDGALLSVTVGLPDSGAFLERKVAGVHR-VRVQD-----KSFTNCSWGYQVGLIGEKLQIYSNLGLNKVLWSSIRS 515 (746)
Q Consensus 442 ~~g~~~l~iLven~Gr~n~G~~~~~~~kGi~g-V~l~~-----~~l~~~~W~~~~~l~ge~~~~~~~~~~~~~~w~~~~~ 515 (746)
+.|.|+|+||||||||+|||++|+++.|||+| |+|++ ++|++|.|.|+++|.||.++|+...+...++|.+...
T Consensus 534 ~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~ 613 (840)
T PLN03059 534 TVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSL 613 (840)
T ss_pred CCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCcccccccc
Confidence 99999999999999999999999999999999 99988 8999999999999999999999876566789976533
Q ss_pred -CC-CcceEEEEEEECCCCCCCeEEEeCCCceEEEEECCeecccccccccCC--------------------CCCCceEE
Q 004533 516 -PT-RQLTWYKTTFRAPAGNDPIALNLQSMGKGEAWVNGQSIGRYWVSFKTS--------------------KGNPSQTQ 573 (746)
Q Consensus 516 -~~-~~~~~yk~~F~~~~~~d~~~Ld~~g~gKG~v~VNG~~iGRYW~~~~~~--------------------~ggPqqtl 573 (746)
+. ++|+|||++|++|++.|||||||+|||||+|||||+||||||+.+.+. =|||||+|
T Consensus 614 ~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 614 LAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred ccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEE
Confidence 23 569999999999999999999999999999999999999999742211 17999999
Q ss_pred EeeecccccceeeeecccccccccCcccccccceEEEEEeccCCCcceEEEeeecccccccccccCCCCccccccccCCC
Q 004533 574 YAVNTVTSIHFCAIIKATNTYHVPRAFLKPTGNLLVLLEEENGNPLGITVDTIAIRKVCGHVTNSHLPPLSSWLRHRQRG 653 (746)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~Y~vP~~~Lk~g~N~lvv~E~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (746)
||||++|||+|+|+||||||++++|..|+++++.++.||++|+|+| |++++|.+.+..
T Consensus 694 --------------------YHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~-p~~~~w~~~~~~- 751 (840)
T PLN03059 694 --------------------YHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQ-PALKNWQIIASG- 751 (840)
T ss_pred --------------------EeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccC-Cccccccccccc-
Confidence 9999999999999999999999999999999999999999999999 569999994433
Q ss_pred cccccccCCCCceeeecCCCCeEEEEeeeccCCCCCCCCCCCcCccccCChhHHHHHHcCCCCccEEeecCCCccCCCCC
Q 004533 654 DTDIKKFGKKPTVQPSCPLGKKISKIVFASFGNPDGDCERYAVGSCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDPCP 733 (746)
Q Consensus 654 ~~~~~~~~~~~~~~LsCp~G~~Is~I~~A~YGr~~~~C~~~~~~~C~~~~sl~iV~~~C~Gk~~C~i~a~~~~Fg~DPCp 733 (746)
+ ..+....++|+||.|++|++|.+|+|||+.++|+++++++|++++|+++|+++|+||++|+|.+++.+||+||||
T Consensus 752 ~----~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~ 827 (840)
T PLN03059 752 K----VNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCP 827 (840)
T ss_pred c----ccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCC
Confidence 2 235677899999999999779999999999999999999999999999999999999999999999999669999
Q ss_pred CCceEEEEEEEeC
Q 004533 734 GIHKALLVDAQCR 746 (746)
Q Consensus 734 gt~KYL~V~Y~C~ 746 (746)
+|+|||+|+|.|+
T Consensus 828 gt~KyL~V~~~Cs 840 (840)
T PLN03059 828 DSMKKLSVEAVCS 840 (840)
T ss_pred CceeEEEEEEEeC
Confidence 9999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-133 Score=1117.54 Aligned_cols=566 Identities=51% Similarity=0.960 Sum_probs=518.8
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeecC
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDVA 80 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~p 80 (746)
||+|+|+|+|++|+|+|+||||||+|||.||+|||+|+.||++||++|+++||+||||+||||||||++||||.||...|
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~p 129 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVP 129 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred CeeeecCCCCce-----------------------------eeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcceEEe
Q 004533 81 GIVFRSDNKPYK-----------------------------IENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVPWVMC 131 (746)
Q Consensus 81 ~~~~Rt~~~~y~-----------------------------iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP~~~~ 131 (746)
++.+||+|++|+ ||||||.++..|++..+.|+.|-+.|+...+.+|||+||
T Consensus 130 g~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 130 GIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred ceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 999999999987 999999988888888999999999999999999999999
Q ss_pred cCCCCCCCcccCCCCCccCCCCCCCCCCCCCceeeccccccccccCCCCccCCHHHHHHHHHHHHHhCCeeeeeeeecCc
Q 004533 132 KQDDAPGPVINACNGMRCGETFKGPNSPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHVALFIAKNGSYVNYYMYHGG 211 (746)
Q Consensus 132 ~~~~~~~~~i~t~ng~~~~~~~~~~~~p~~P~~~tE~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~N~YM~hGG 211 (746)
.+.++|++++++|||++|.+.|..+++|++|+||||+|+|||++||++++.|++++++..|++|+++|+|++||||||||
T Consensus 210 k~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGG 289 (649)
T KOG0496|consen 210 KQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGG 289 (649)
T ss_pred cCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecc
Confidence 99999999999999999998888788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccCCCCCCCcCCCCCChhHHHHHHHHHHHhhccCCCCCCccccccCCCcceeeEeeccccceeeeee
Q 004533 212 TNFGRTAAAFMITGYYDQAPLDEYGLVREPKWGHLKELHAAIKLCSRPLLTGTQNVISLGQLQEAFVFEETSGVCAAFLV 291 (746)
Q Consensus 212 TNfG~~~g~~~~TSYDY~APL~E~G~~~tpKy~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~ 291 (746)
||||+++|.+.+|||||||||+ |..++|||.|+|.+|..++.+++.+..+++....+++ ..+.|+.|+.
T Consensus 290 TNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~---------~~~~C~~Fl~ 358 (649)
T KOG0496|consen 290 TNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGN---------LREACAAFLS 358 (649)
T ss_pred cCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccccccc---------hhhHHHHHHh
Confidence 9999999999999999999999 9999999999999999999998887777655444433 3345999999
Q ss_pred ccCccceeEEEEcceeeecCCceeeecCCCCccccccceeeccccccccccCcccCChhhhhHhhhhhcccCcccccccc
Q 004533 292 NNDERKAVTVLFRNISYELPRKSISILPDCKTVAFNTERVSTQYNKRSKTSNLKFDSDEKWEEYREAILNFDNTLLRAEG 371 (746)
Q Consensus 292 n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~f~t~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~p~ 371 (746)
|++......|.|++..+.+|++||+|+++|++++|||+++.++ |....| |.
T Consensus 359 n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-----------------~~~~~e------------~~ 409 (649)
T KOG0496|consen 359 NNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-----------------WISFTE------------PI 409 (649)
T ss_pred cCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-----------------cccccC------------CC
Confidence 9998888889999999999999999999999999999987533 222222 45
Q ss_pred chhhhccCCCCCceEEEEEEeecCCCCCCCceEec-CcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCCceEEE
Q 004533 372 LLDQISAAKDASDYFWYTFRFHYNSSNAQAPLDVQ-SHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGTNDGAL 450 (746)
Q Consensus 372 ~~Eql~~t~d~~gy~~Y~t~~~~~~~~~~~~L~v~-~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~l~i 450 (746)
++|..+| .+||++|++.++.+.++ ...|+|. +++|++||||||+++|+++++.....+++..++.|..|.|+|+|
T Consensus 410 ~~~~~~~---~~~~ll~~~~~t~d~sd-~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~i 485 (649)
T KOG0496|consen 410 PSEAVGQ---SFGGLLEQTNLTKDKSD-TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLAL 485 (649)
T ss_pred ccccccC---cceEEEEEEeeccccCC-CceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEE
Confidence 5777766 58899999988754432 3568888 99999999999999999999887777888888889999999999
Q ss_pred EEecCCCccccccccccccceeE-EEECCe-ecccCCceEeeccCcchhhccccCCcccccccccCC-CC-CcceEEEEE
Q 004533 451 LSVTVGLPDSGAFLERKVAGVHR-VRVQDK-SFTNCSWGYQVGLIGEKLQIYSNLGLNKVLWSSIRS-PT-RQLTWYKTT 526 (746)
Q Consensus 451 Lven~Gr~n~G~~~~~~~kGi~g-V~l~~~-~l~~~~W~~~~~l~ge~~~~~~~~~~~~~~w~~~~~-~~-~~~~~yk~~ 526 (746)
||||+||+||| +++++.|||+| |+|+|. +++++.|.|+++|.||...+|...+.++++|..... +. ++.+||+ +
T Consensus 486 L~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~ 563 (649)
T KOG0496|consen 486 LSENVGLPNYG-HFENDFKGILGPVYLNGLIDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-T 563 (649)
T ss_pred EEEecCCCCcC-cccccccccccceEEeeeeccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-E
Confidence 99999999999 78899999999 999998 778788999999999999999998888899987654 22 6788998 9
Q ss_pred EECCCCCCCeEEEeCCCceEEEEECCeecccccccccCCCCCCceEEEeeecccccceeeeecccccccccCcccccccc
Q 004533 527 FRAPAGNDPIALNLQSMGKGEAWVNGQSIGRYWVSFKTSKGNPSQTQYAVNTVTSIHFCAIIKATNTYHVPRAFLKPTGN 606 (746)
Q Consensus 527 F~~~~~~d~~~Ld~~g~gKG~v~VNG~~iGRYW~~~~~~~ggPqqtl~~~~~~~~~~~~~~~~~~~~Y~vP~~~Lk~g~N 606 (746)
|++|++.+|+||||.|||||+|||||+||||||+++ |||+++ |||++|||++.|
T Consensus 564 f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~-----G~Q~~y---------------------hvPr~~Lk~~~N 617 (649)
T KOG0496|consen 564 FDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF-----GPQRTY---------------------HVPRSWLKPSGN 617 (649)
T ss_pred ecCCCCCCCeEEecCCCcceEEEECCcccccccCCC-----CCceEE---------------------ECcHHHhCcCCc
Confidence 999999999999999999999999999999999999 998888 699999999999
Q ss_pred eEEEEEeccCCCcceEEEeeeccccccccccc
Q 004533 607 LLVLLEEENGNPLGITVDTIAIRKVCGHVTNS 638 (746)
Q Consensus 607 ~lvv~E~~~~~~~~i~~~~~~~~~~~~~~~~~ 638 (746)
+||||||++++|.+|+|+++.+..+|..++|+
T Consensus 618 ~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 618 LLVVFEEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred eEEEEEeccCCCccceEEEeEeeeEeeecccC
Confidence 99999999999999999999888999998864
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=6.1e-71 Score=595.24 Aligned_cols=245 Identities=40% Similarity=0.754 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeecC
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDVA 80 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~p 80 (746)
+|+|+|+||||+|+|||++|||||+|||+||+|||+|.+||++||++|+|+||+|||||||||||||++||+|.||.+++
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~ 104 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKP 104 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGST
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeeeecCCCCce-----------------------------eeccCCCCCcccCCCCchHHHHHHHHHHhcCCC-cceEE
Q 004533 81 GIVFRSDNKPYK-----------------------------IENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTG-VPWVM 130 (746)
Q Consensus 81 ~~~~Rt~~~~y~-----------------------------iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~-vP~~~ 130 (746)
++++||+|++|+ ||||||. + .++++||+.|++++++.+++ ++.++
T Consensus 105 ~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~-~~~~~Y~~~l~~~~~~~g~~~~~~~t 179 (319)
T PF01301_consen 105 DIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----Y-GTDRAYMEALKDAYRDWGIDPVLLYT 179 (319)
T ss_dssp TS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----T-SS-HHHHHHHHHHHHHTT-SSSBEEE
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----C-cccHhHHHHHHHHHHHhhCccceeec
Confidence 999999999988 9999994 2 37999999999999999998 66777
Q ss_pred ecCCC--------CCCCcccCCCCCccCCCCC------CCCCCCCCceeeccccccccccCCCCccCCHHHHHHHHHHHH
Q 004533 131 CKQDD--------APGPVINACNGMRCGETFK------GPNSPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFHVALFI 196 (746)
Q Consensus 131 ~~~~~--------~~~~~i~t~ng~~~~~~~~------~~~~p~~P~~~tE~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l 196 (746)
++... .++..+.+++++.|.+... ...+|++|+|++|||+|||++||++++.+++++++..++++|
T Consensus 180 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l 259 (319)
T PF01301_consen 180 TDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARML 259 (319)
T ss_dssp EESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS---BTTS--HHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEeccccccccCCCCccCCHHHHHHHHHHHH
Confidence 65421 2222233445555543210 034588999999999999999999999999999999999999
Q ss_pred HhCCeeeeeeeecCccCCCCCCCCcc-----ccccCCCCCCCcCCCCCChhHHHHHHHHHH
Q 004533 197 AKNGSYVNYYMYHGGTNFGRTAAAFM-----ITGYYDQAPLDEYGLVREPKWGHLKELHAA 252 (746)
Q Consensus 197 ~~g~s~~N~YM~hGGTNfG~~~g~~~-----~TSYDY~APL~E~G~~~tpKy~~lr~l~~~ 252 (746)
++|.+ +||||||||||||+++|+.. +|||||+|||+|+|++ +|||.+||+||.+
T Consensus 260 ~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 260 SKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp HHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHHHHHHT
T ss_pred Hhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHHHHHhc
Confidence 99955 89999999999999999844 4999999999999998 7999999999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.1e-27 Score=268.89 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=159.7
Q ss_pred ChHHHHHHHHHcCCCEEEE-cccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCc-ccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQT-YVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGP-FIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~-yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGP-YIcAE~~~Gg~P~Wl~~ 78 (746)
.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. |+++|++.||+||||||| .+|.+|..+++|+||..
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~ 108 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKYPEILAV 108 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceEEEecCCCCCCchHHhcCChhheEe
Confidence 4999999999999999999 99999999999999999 88888 999999999999999999 99999999999999987
Q ss_pred cCCeeeecCCCC----------ce-------------------------eeccCCCCCcccCCCCchHHHHHHHHHHhc-
Q 004533 79 VAGIVFRSDNKP----------YK-------------------------IENEYQTIEPAFHEKGPPYVLWAAKMAVDF- 122 (746)
Q Consensus 79 ~p~~~~Rt~~~~----------y~-------------------------iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~- 122 (746)
++.-..| .+++ |+ ++||||++.|.|+.|.+.+..||++-+-..
T Consensus 109 ~~~~~~~-~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~ 187 (673)
T COG1874 109 DENGRVR-SDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLD 187 (673)
T ss_pred cCCCccc-CCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHH
Confidence 6652222 2222 22 999999866677778888888888765211
Q ss_pred CCCcceEEecCC-CCC-CCcccCCC-----CCccC-CCCCCCCCCCC----Cceeeccccccc-cccCCCCccCC-HHHH
Q 004533 123 HTGVPWVMCKQD-DAP-GPVINACN-----GMRCG-ETFKGPNSPNK----PSIWTEDWTSFY-QVWGGKPYIRS-AQDI 188 (746)
Q Consensus 123 gi~vP~~~~~~~-~~~-~~~i~t~n-----g~~~~-~~~~~~~~p~~----P~~~tE~~~Gwf-~~WG~~~~~~~-~~~~ 188 (746)
.+..+|=+..-+ +.. -..|.+-+ +..-. -+|. .....+ +....|.+-+|| +.|..+.--.. .+.-
T Consensus 188 ~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~-~f~~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~ 266 (673)
T COG1874 188 NLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYR-RFESEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFD 266 (673)
T ss_pred hhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHh-hhhhhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcc
Confidence 122232221100 000 00111111 00000 0111 111222 556667778888 66665443332 2233
Q ss_pred HHHHHHHHHhCCeeeeeeeecCccCCC------CCCCC-----------ccccccCCCCCCCcCCCC
Q 004533 189 AFHVALFIAKNGSYVNYYMYHGGTNFG------RTAAA-----------FMITGYYDQAPLDEYGLV 238 (746)
Q Consensus 189 ~~~~~~~l~~g~s~~N~YM~hGGTNfG------~~~g~-----------~~~TSYDY~APL~E~G~~ 238 (746)
+..++..|....+ -||||||+|++|+ +.+++ ...|++++.+.+.+.|.+
T Consensus 267 ~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 267 AYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred hHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcchhhhhhccCCCCCccc
Confidence 4455566666655 6999999999999 66655 257999999999999984
No 5
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.81 E-value=1.6e-20 Score=163.60 Aligned_cols=76 Identities=38% Similarity=0.733 Sum_probs=62.2
Q ss_pred eecCCCCeEEEEeeeccCCCC-CCCCCC---CcCccccCChhHHHHHHcCCCCccEEeecCCCccCCCCCCCceEEEEEE
Q 004533 668 PSCPLGKKISKIVFASFGNPD-GDCERY---AVGSCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDPCPGIHKALLVDA 743 (746)
Q Consensus 668 LsCp~G~~Is~I~~A~YGr~~-~~C~~~---~~~~C~~~~sl~iV~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~KYL~V~Y 743 (746)
|+||.|++| +|.+|+|||++ .+|+.. ...+|++++++++|+++|+||++|+|.+++.+|| ||||++.|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999999 69999999998 699843 4578999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 004533 744 QC 745 (746)
Q Consensus 744 ~C 745 (746)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 6
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.76 E-value=5.3e-19 Score=181.04 Aligned_cols=86 Identities=29% Similarity=0.543 Sum_probs=80.1
Q ss_pred cCCCCceeeecCCCCeEEEEeeeccCCCC-CCCCCC----CcCccccCChhHHHHHHcCCCCccEEeecCCCccCCCCCC
Q 004533 660 FGKKPTVQPSCPLGKKISKIVFASFGNPD-GDCERY----AVGSCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDPCPG 734 (746)
Q Consensus 660 ~~~~~~~~LsCp~G~~Is~I~~A~YGr~~-~~C~~~----~~~~C~~~~sl~iV~~~C~Gk~~C~i~a~~~~Fg~DPCpg 734 (746)
+++|+.++|+||.|.+|+ |++|+|||.+ ..|.+. ...+|..++++.++.++|+++++|.|.|...+|+.|||||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 589999999999999995 9999999987 799743 3589999999999999999999999999999999999999
Q ss_pred CceEEEEEEEeC
Q 004533 735 IHKALLVDAQCR 746 (746)
Q Consensus 735 t~KYL~V~Y~C~ 746 (746)
|+|||+|.|.|.
T Consensus 119 T~KYLev~Y~Cv 130 (265)
T KOG4729|consen 119 TSKYLEVQYGCV 130 (265)
T ss_pred chhheEEEeccC
Confidence 999999999994
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.52 E-value=2.5e-14 Score=158.39 Aligned_cols=234 Identities=17% Similarity=0.253 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHcCCCEEEE-cccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee-
Q 004533 1 MWPSLIAKAKEGGLDVIQT-YVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD- 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~-yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~- 78 (746)
.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .|+++|++|+++||+|||+.. .+..|.||.+
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~~~P~Wl~~~ 79 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TAAPPAWLYDK 79 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TTTS-HHHHCC
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------ccccccchhhh
Confidence 3899999999999999996 56799999999999999 899999999999999999954 6789999976
Q ss_pred cCCeeeecCCCC----------------ce------------------------eeccCCCCCcccCCCCchHHHHHHHH
Q 004533 79 VAGIVFRSDNKP----------------YK------------------------IENEYQTIEPAFHEKGPPYVLWAAKM 118 (746)
Q Consensus 79 ~p~~~~Rt~~~~----------------y~------------------------iENEYg~~~~~~~~~d~~Y~~~L~~~ 118 (746)
+|++.....+.. |+ |+||+|...+.+..+.++|.+||++.
T Consensus 80 ~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~k 159 (374)
T PF02449_consen 80 YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEK 159 (374)
T ss_dssp SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHH
Confidence 788633222111 11 99999864333334556677777776
Q ss_pred HH--------------------------------------------------------------hcCCCcceEEecCCC-
Q 004533 119 AV--------------------------------------------------------------DFHTGVPWVMCKQDD- 135 (746)
Q Consensus 119 ~~--------------------------------------------------------------~~gi~vP~~~~~~~~- 135 (746)
+. +..-+.|+.++....
T Consensus 160 Y~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~ 239 (374)
T PF02449_consen 160 YGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSW 239 (374)
T ss_dssp HSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT-
T ss_pred hCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccc
Confidence 53 111111111111000
Q ss_pred --CCCC-----cccCC-CCCccC---CCCCC-------------CCCCCCCceeeccccccccccCCCCccCCHHHHHHH
Q 004533 136 --APGP-----VINAC-NGMRCG---ETFKG-------------PNSPNKPSIWTEDWTSFYQVWGGKPYIRSAQDIAFH 191 (746)
Q Consensus 136 --~~~~-----~i~t~-ng~~~~---~~~~~-------------~~~p~~P~~~tE~~~Gwf~~WG~~~~~~~~~~~~~~ 191 (746)
..+. .++.. ...|.. ..... ...+++|.+++|..+| -..|+.......+..+...
T Consensus 240 ~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~ 318 (374)
T PF02449_consen 240 FNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLW 318 (374)
T ss_dssp --SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SSSSS-----TTHHHHH
T ss_pred cCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCCccCCCCCCCCHHHHH
Confidence 0000 00000 000000 00000 0147899999999998 5567665555555666655
Q ss_pred HHHHHHhCCeeeeeeeecCccCCCCCCCCccccccCCCCCCCcCCCCCChhHHHHHHHHHHHhh
Q 004533 192 VALFIAKNGSYVNYYMYHGGTNFGRTAAAFMITGYYDQAPLDEYGLVREPKWGHLKELHAAIKL 255 (746)
Q Consensus 192 ~~~~l~~g~s~~N~YM~hGGTNfG~~~g~~~~TSYDY~APL~E~G~~~tpKy~~lr~l~~~l~~ 255 (746)
.-..++.|+..+.|+=+ ..-.+|.=. | ..+.|+-+|...+++|.+++++.+.|+.
T Consensus 319 ~~~~~A~Ga~~i~~~~w-r~~~~g~E~-------~-~~g~~~~dg~~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 319 SWQAIAHGADGILFWQW-RQSRFGAEQ-------F-HGGLVDHDGREPTRRYREVAQLGRELKK 373 (374)
T ss_dssp HHHHHHTT-S-EEEC-S-B--SSSTTT-------T-S--SB-TTS--B-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCeeEeeec-cCCCCCchh-------h-hcccCCccCCCCCcHHHHHHHHHHHHhc
Confidence 55678899988777765 222333221 1 1356777783348999999999888764
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.96 E-value=9.9e-10 Score=101.91 Aligned_cols=69 Identities=33% Similarity=0.653 Sum_probs=51.6
Q ss_pred CcceEEEEEEECCCCCCCeE-EEe--CCCceEEEEECCeecccccccccCCCCCCceEEEeeecccccceeeeecccccc
Q 004533 518 RQLTWYKTTFRAPAGNDPIA-LNL--QSMGKGEAWVNGQSIGRYWVSFKTSKGNPSQTQYAVNTVTSIHFCAIIKATNTY 594 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~~d~~~-Ld~--~g~gKG~v~VNG~~iGRYW~~~~~~~ggPqqtl~~~~~~~~~~~~~~~~~~~~Y 594 (746)
.+..|||++|........+. |+. ....+.+|||||++|||||+.+ |||++|
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf--------------------- 87 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTF--------------------- 87 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEE---------------------
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEE---------------------
Confidence 57899999996422111223 333 4568899999999999999878 999999
Q ss_pred cccCcccccccceEEEEE
Q 004533 595 HVPRAFLKPTGNLLVLLE 612 (746)
Q Consensus 595 ~vP~~~Lk~g~N~lvv~E 612 (746)
.||+.+|+.+.|.|+|+-
T Consensus 88 ~~p~~il~~~n~v~~vl~ 105 (111)
T PF13364_consen 88 SVPAGILKYGNNVLVVLW 105 (111)
T ss_dssp EE-BTTBTTCEEEEEEEE
T ss_pred EeCceeecCCCEEEEEEE
Confidence 599999998766665553
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.60 E-value=1.5e-07 Score=87.30 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=58.1
Q ss_pred hhhhccCCCCCceEEEEEEeecCCCCCCCc-eEec-CcceEEEEEECCEEEEEee-cCCCceeeEEEeeeeccCCCceEE
Q 004533 373 LDQISAAKDASDYFWYTFRFHYNSSNAQAP-LDVQ-SHGHILHAFVNGEYTGSAH-GSHDNVSFTLRNTVHLRQGTNDGA 449 (746)
Q Consensus 373 ~Eql~~t~d~~gy~~Y~t~~~~~~~~~~~~-L~v~-~~~d~~~vfvng~~~G~~~-~~~~~~~~~~~~~~~l~~g~~~l~ 449 (746)
.+..+..+++.|++|||++|...+.+.... |.+. +.+++++|||||+++|+.. +...+..|.++..+ |+.++++|.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~n~v~~ 102 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYGNNVLV 102 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTCEEEEE
T ss_pred eeccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCCCEEEE
Confidence 455556677999999999997533222223 4444 6899999999999999988 33334445554333 555677889
Q ss_pred EEEecCCC
Q 004533 450 LLSVTVGL 457 (746)
Q Consensus 450 iLven~Gr 457 (746)
+|+.+||+
T Consensus 103 vl~~~~g~ 110 (111)
T PF13364_consen 103 VLWDNMGH 110 (111)
T ss_dssp EEEE-STT
T ss_pred EEEeCCCC
Confidence 99999996
No 10
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.89 E-value=4.4e-05 Score=74.77 Aligned_cols=95 Identities=24% Similarity=0.271 Sum_probs=65.6
Q ss_pred CCCCceEEEEEEeecCCC--CCCCceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCC-ceEEEEEecCC
Q 004533 380 KDASDYFWYTFRFHYNSS--NAQAPLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGT-NDGALLSVTVG 456 (746)
Q Consensus 380 ~d~~gy~~Y~t~~~~~~~--~~~~~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~l~iLven~G 456 (746)
....|+.|||++|.++.+ .....|.+.++++.+.|||||+++|...+... ++.+.++-.|+.|. |+|+|.|.+..
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~v~~~~ 141 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVRVDNWP 141 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEEEESSS
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEEEeecC
Confidence 457899999999988653 24567888999999999999999999876543 34445444577886 99999998544
Q ss_pred Cccccccc-cccccceeE-EEE
Q 004533 457 LPDSGAFL-ERKVAGVHR-VRV 476 (746)
Q Consensus 457 r~n~G~~~-~~~~kGi~g-V~l 476 (746)
.-.+-+.. .....||.+ |.|
T Consensus 142 ~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 142 DGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp GGGCGBSSSEEE--EEESEEEE
T ss_pred CCceeecCcCCccCccccEEEE
Confidence 33221111 123578887 775
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.99 E-value=0.00074 Score=76.80 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++|+.||++|+|++++-|.|...+|. +|+++.+|-...+++|+.+.++||.+|+--=. -.+|.||.+.
T Consensus 55 ~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~~ 126 (427)
T TIGR03356 55 RYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALEDR 126 (427)
T ss_pred hHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHhc
Confidence 48999999999999999999999999999 79999989899999999999999999977321 2478887643
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcceE
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVPWV 129 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP~~ 129 (746)
.+ |+ | ...-..|.+..+.+++..|=.|+..
T Consensus 127 gG---------w~--~---------~~~~~~f~~ya~~~~~~~~d~v~~w 156 (427)
T TIGR03356 127 GG---------WL--N---------RDTAEWFAEYAAVVAERLGDRVKHW 156 (427)
T ss_pred CC---------CC--C---------hHHHHHHHHHHHHHHHHhCCcCCEE
Confidence 22 11 0 0012456677777777776566633
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.93 E-value=0.0011 Score=69.37 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCEEEEcccccccC-CcCCc-cccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHE-PQKGQ-YDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~he-p~~g~-~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
++.+++||++|+|+|++.+.|...+ |.|+. ++=+.-..|+++|+.|++.||+|||.+
T Consensus 24 ~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~ 82 (281)
T PF00150_consen 24 EADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDL 82 (281)
T ss_dssp HHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 5789999999999999999995555 67764 665556799999999999999999874
No 13
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.85 E-value=0.0019 Score=63.23 Aligned_cols=66 Identities=27% Similarity=0.534 Sum_probs=49.8
Q ss_pred CcceEEEEEEECCCCC--CCeEEEeCCCc-eEEEEECCeecccccccccCCCCCCceEEEeeecccccceeeeecccccc
Q 004533 518 RQLTWYKTTFRAPAGN--DPIALNLQSMG-KGEAWVNGQSIGRYWVSFKTSKGNPSQTQYAVNTVTSIHFCAIIKATNTY 594 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~~--d~~~Ld~~g~g-KG~v~VNG~~iGRYW~~~~~~~ggPqqtl~~~~~~~~~~~~~~~~~~~~Y 594 (746)
.+..|||++|.+|+.. ..++|.+.|.. ...|||||+.||+-.... .| -.+
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~-----~~-~~~--------------------- 119 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY-----TP-FEF--------------------- 119 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT-----S--EEE---------------------
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc-----CC-eEE---------------------
Confidence 5689999999999753 46899999884 899999999999865432 23 222
Q ss_pred cccCccccccc-ceEEEE
Q 004533 595 HVPRAFLKPTG-NLLVLL 611 (746)
Q Consensus 595 ~vP~~~Lk~g~-N~lvv~ 611 (746)
-|+ +.|++|. |+|.|.
T Consensus 120 dIt-~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DIT-DYLKPGEENTLAVR 136 (167)
T ss_dssp ECG-GGSSSEEEEEEEEE
T ss_pred eCh-hhccCCCCEEEEEE
Confidence 465 3688888 998884
No 14
>PLN02801 beta-amylase
Probab=96.84 E-value=0.0021 Score=73.04 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCC-----CCCcee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYG-----GLPIWL 76 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~G-----g~P~Wl 76 (746)
+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++.+---=--|+- ..| -||.|+
T Consensus 40 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP~WV 115 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIPIPQWV 115 (517)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHH
Confidence 45789999999999999999999997 699999995 67778999999999653221112221 111 489999
Q ss_pred ee----cCCeeeecCCCC-----ce---eeccC---CCCCcccCCCCchHHHHHHHHHHh
Q 004533 77 HD----VAGIVFRSDNKP-----YK---IENEY---QTIEPAFHEKGPPYVLWAAKMAVD 121 (746)
Q Consensus 77 ~~----~p~~~~Rt~~~~-----y~---iENEY---g~~~~~~~~~d~~Y~~~L~~~~~~ 121 (746)
.+ +|++ +-|+..+ |+ ++|+= |-. . =++=.+||+..++-+.+
T Consensus 116 ~~~g~~~pDi-~ftDr~G~rn~EyLSlg~D~~pvl~GRT-p--lq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 116 RDVGDSDPDI-FYTNRSGNRNKEYLSIGVDNLPLFHGRT-A--VEMYSDYMKSFRENMAD 171 (517)
T ss_pred HHhhccCCCc-eeecCCCCcCcceeeeccCcccccCCCC-H--HHHHHHHHHHHHHHHHH
Confidence 74 5666 4344332 33 44441 100 0 00113677777777765
No 15
>PLN02161 beta-amylase
Probab=96.52 E-value=0.0052 Score=69.98 Aligned_cols=113 Identities=17% Similarity=0.311 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCC-----CCCcee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYG-----GLPIWL 76 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~G-----g~P~Wl 76 (746)
+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..+++++++++||++.+---=--|+- ..| -||.|+
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP~WV 195 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLPLWI 195 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCCHHH
Confidence 45799999999999999999999998 899999995 67788999999999654321112221 111 389999
Q ss_pred ee----cCCeeeec----CCCCce---eecc---CCCCCcccCCCCchHHHHHHHHHHhc
Q 004533 77 HD----VAGIVFRS----DNKPYK---IENE---YQTIEPAFHEKGPPYVLWAAKMAVDF 122 (746)
Q Consensus 77 ~~----~p~~~~Rt----~~~~y~---iENE---Yg~~~~~~~~~d~~Y~~~L~~~~~~~ 122 (746)
.+ +|++-+.. .++.|+ ++|+ -|-. . =++=.+||+..++.+.+.
T Consensus 196 ~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRT-p--lq~Y~Dfm~SFr~~F~~~ 252 (531)
T PLN02161 196 REIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRT-A--VQCYEDFMLSFSTKFEPY 252 (531)
T ss_pred HhhhccCCCceEEcCCCCcccceeeeecccchhcCCCC-H--HHHHHHHHHHHHHHHHHH
Confidence 74 56763322 123344 5555 1110 0 001236777777777653
No 16
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.39 E-value=0.0029 Score=70.67 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCccccc----ccCCCCCCceee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIES----EWTYGGLPIWLH 77 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcA----E~~~Gg~P~Wl~ 77 (746)
+..|+++|++|+..|.+.|-|.+.|.+ |++|||+ -..+++++++++||++.+-.-=--|+ ..-+=-||.|+.
T Consensus 19 ~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv~ 95 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWVW 95 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHHH
T ss_pred HHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHHH
Confidence 467999999999999999999999997 9999999 47788899999999976532111121 111115899997
Q ss_pred e
Q 004533 78 D 78 (746)
Q Consensus 78 ~ 78 (746)
.
T Consensus 96 ~ 96 (402)
T PF01373_consen 96 E 96 (402)
T ss_dssp H
T ss_pred h
Confidence 4
No 17
>PLN02905 beta-amylase
Probab=96.32 E-value=0.013 Score=67.99 Aligned_cols=76 Identities=17% Similarity=0.342 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCC-----CCCcee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYG-----GLPIWL 76 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~G-----g~P~Wl 76 (746)
+..|+++|++|+..|.+=|.|.+.|. .|++|||+| ..+++++++++||++.+---=--|+- +.| -||.|+
T Consensus 289 ~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP~WV 364 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLPHWV 364 (702)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHH
Confidence 45799999999999999999999998 899999995 67788999999999653321112321 112 499999
Q ss_pred ee----cCCe
Q 004533 77 HD----VAGI 82 (746)
Q Consensus 77 ~~----~p~~ 82 (746)
.. +|+|
T Consensus 365 ~e~g~~nPDi 374 (702)
T PLN02905 365 AEIGRSNPDI 374 (702)
T ss_pred HHhhhcCCCc
Confidence 74 5665
No 18
>PLN00197 beta-amylase; Provisional
Probab=96.32 E-value=0.0073 Score=69.36 Aligned_cols=112 Identities=19% Similarity=0.319 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCC-----CCCcee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYG-----GLPIWL 76 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~G-----g~P~Wl 76 (746)
+..|+++|++|+..|.+=|.|.+.|. .|++|||+| ..+++++++++||++.+---=--|+- +.| -||.|+
T Consensus 130 ~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~IpLP~WV 205 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIPLPKWV 205 (573)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHH
Confidence 45799999999999999999999998 899999995 66778999999999653321112321 112 499999
Q ss_pred ee----cCCeeeecC-----CCCce---eecc--C-CCCCcccCCCCchHHHHHHHHHHhc
Q 004533 77 HD----VAGIVFRSD-----NKPYK---IENE--Y-QTIEPAFHEKGPPYVLWAAKMAVDF 122 (746)
Q Consensus 77 ~~----~p~~~~Rt~-----~~~y~---iENE--Y-g~~~~~~~~~d~~Y~~~L~~~~~~~ 122 (746)
.. +|++-+ |+ ++.|+ ++|+ + |-. . =++=.+||+..++-+...
T Consensus 206 ~~~g~~dpDiff-tDr~G~rn~EyLSlg~D~~pvl~GRT-p--iq~Y~DFM~SFr~~F~~~ 262 (573)
T PLN00197 206 VEEVDKDPDLAY-TDQWGRRNYEYVSLGCDTLPVLKGRT-P--VQCYADFMRAFRDNFKHL 262 (573)
T ss_pred HHhhccCCCcee-ecCCCCcccceeccccccccccCCCC-H--HHHHHHHHHHHHHHHHHH
Confidence 74 566533 22 22233 4444 1 110 0 001236777777777663
No 19
>PLN02705 beta-amylase
Probab=96.22 E-value=0.0066 Score=70.20 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEE--EecCcccccccCCC-----CCCc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVC--LRIGPFIESEWTYG-----GLPI 74 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vi--lrpGPYIcAE~~~G-----g~P~ 74 (746)
+..|+++|++|+..|.+=|.|.+.|. .|++|||+| ..+++++++++||++. |.. --|+- ..| -||.
T Consensus 271 ~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~IPLP~ 344 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMISLPQ 344 (681)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccccCCH
Confidence 45799999999999999999999998 799999995 6677899999999965 442 12322 112 4999
Q ss_pred eeee----cCCe
Q 004533 75 WLHD----VAGI 82 (746)
Q Consensus 75 Wl~~----~p~~ 82 (746)
|+.. .|+|
T Consensus 345 WV~e~g~~nPDi 356 (681)
T PLN02705 345 WVLEIGKDNQDI 356 (681)
T ss_pred HHHHhcccCCCc
Confidence 9974 5665
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.93 E-value=0.025 Score=67.11 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=55.7
Q ss_pred CCCceEEEEEEeecCCC--CCCCceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCC-ceEEEEEecC
Q 004533 381 DASDYFWYTFRFHYNSS--NAQAPLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGT-NDGALLSVTV 455 (746)
Q Consensus 381 d~~gy~~Y~t~~~~~~~--~~~~~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~l~iLven~ 455 (746)
+..|..|||++|.++.. .....|.+.++...+.|||||++||...+.. .++.+.++-.|+.|. |+|+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEecC
Confidence 46789999999988643 2457888999999999999999999877543 345555444467775 5999999764
No 21
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.87 E-value=0.034 Score=69.84 Aligned_cols=89 Identities=22% Similarity=0.427 Sum_probs=62.1
Q ss_pred CceEEEEEEeecCCC--CC-CCceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCCceEEEEEecCCCcc
Q 004533 383 SDYFWYTFRFHYNSS--NA-QAPLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGTNDGALLSVTVGLPD 459 (746)
Q Consensus 383 ~gy~~Y~t~~~~~~~--~~-~~~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~l~iLven~Gr~n 459 (746)
.+-.|||++|.++.+ +. +..|.+.++.-.+.|||||+++|...+.. .++.+.++-.|+.|.|.|+|.|..- .
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~---s 193 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW---S 193 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec---C
Confidence 467899999988753 12 56888999999999999999999876543 3345554444778889999987421 1
Q ss_pred ccccccc----cccceeE-EEE
Q 004533 460 SGAFLER----KVAGVHR-VRV 476 (746)
Q Consensus 460 ~G~~~~~----~~kGi~g-V~l 476 (746)
.|..+++ ...||.+ |+|
T Consensus 194 dgs~~e~qd~w~~sGI~R~V~L 215 (1027)
T PRK09525 194 DGSYLEDQDMWRMSGIFRDVSL 215 (1027)
T ss_pred CCCccccCCceeeccccceEEE
Confidence 2222221 2368887 876
No 22
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.86 E-value=0.026 Score=70.92 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=62.8
Q ss_pred CceEEEEEEeecCCC--CCCCceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCCceEEEEEecCCCccc
Q 004533 383 SDYFWYTFRFHYNSS--NAQAPLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGTNDGALLSVTVGLPDS 460 (746)
Q Consensus 383 ~gy~~Y~t~~~~~~~--~~~~~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~l~iLven~Gr~n~ 460 (746)
.|-.|||++|.++.+ +.+..|.+.++...+.|||||++||...+... .+.+.++-.|+.|.|+|+|.|.+.. .
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~---d 182 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWA---D 182 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecC---C
Confidence 356799999988653 24578889999999999999999998765433 3445444346778899999886432 2
Q ss_pred cccccc----cccceeE-EEE
Q 004533 461 GAFLER----KVAGVHR-VRV 476 (746)
Q Consensus 461 G~~~~~----~~kGi~g-V~l 476 (746)
|..+++ ...||.+ |+|
T Consensus 183 ~s~le~qd~w~~sGI~R~V~L 203 (1021)
T PRK10340 183 STYLEDQDMWWLAGIFRDVYL 203 (1021)
T ss_pred CCccccCCccccccccceEEE
Confidence 222221 2368887 776
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.70 E-value=0.04 Score=59.41 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=63.9
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCC-------CCc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGG-------LPI 74 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg-------~P~ 74 (746)
|+.+|++||+||+|+|++ .|-|. -.+|+++|-+.||.|+.-+.=.-++.|..-| -|.
T Consensus 38 ~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~ 101 (298)
T PF02836_consen 38 MERDLELMKEMGFNAIRT-----HHYPP-----------SPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPE 101 (298)
T ss_dssp HHHHHHHHHHTT-SEEEE-----TTS-------------SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGG
T ss_pred HHHHHHHHHhcCcceEEc-----ccccC-----------cHHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHH
Confidence 678899999999999999 34442 2579999999999999764211233444322 244
Q ss_pred eeee----cCCeeeec-CCCC---ceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcceEEecC
Q 004533 75 WLHD----VAGIVFRS-DNKP---YKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVPWVMCKQ 133 (746)
Q Consensus 75 Wl~~----~p~~~~Rt-~~~~---y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP~~~~~~ 133 (746)
|... ...|..|- |.|. |-+=||-. ...+++.|.+++++..-+-|+.....
T Consensus 102 ~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 102 FRENAEQELREMVRRDRNHPSIIMWSLGNESD---------YREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH---------HHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred HHHHHHHHHHHHHHcCcCcCchheeecCccCc---------cccchhHHHHHHHhcCCCCceeeccc
Confidence 4421 12232232 2333 22778872 35788999999999887777654433
No 24
>PLN02803 beta-amylase
Probab=95.62 E-value=0.018 Score=66.03 Aligned_cols=76 Identities=17% Similarity=0.406 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCC-----CCCcee
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYG-----GLPIWL 76 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~G-----g~P~Wl 76 (746)
+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..+++++++++||++.+---=--|+- +.| -||.|+
T Consensus 110 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP~WV 185 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLPPWV 185 (548)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHH
Confidence 45799999999999999999999998 599999995 67778999999999653321112221 112 499999
Q ss_pred ee----cCCe
Q 004533 77 HD----VAGI 82 (746)
Q Consensus 77 ~~----~p~~ 82 (746)
.. +|+|
T Consensus 186 ~e~~~~~pDi 195 (548)
T PLN02803 186 LEEMSKNPDL 195 (548)
T ss_pred HHhhhcCCCc
Confidence 74 5665
No 25
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.49 E-value=0.01 Score=68.08 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.|+++|+.||++|+|+.++-|.|...+|. +|+++-+|..-.+++|+.++++||..|+-- ---.+|.||.+
T Consensus 59 ~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~~ 130 (455)
T PF00232_consen 59 RYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLED 130 (455)
T ss_dssp HHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHHH
T ss_pred hhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eecccccceee
Confidence 38999999999999999999999999999 699999999999999999999999988762 23468888865
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.96 E-value=0.015 Score=61.39 Aligned_cols=101 Identities=20% Similarity=0.383 Sum_probs=66.4
Q ss_pred ccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeecCCeeeec-------------CCC
Q 004533 23 WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDVAGIVFRS-------------DNK 89 (746)
Q Consensus 23 W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~p~~~~Rt-------------~~~ 89 (746)
|...||++|+|+|+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+.-.++. .+.
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLSKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999 8999999999999998 433322 433 6899997422100110 011
Q ss_pred --CceeeccCCCCC-------cccCCCCchHHHHHHHHHHhcCCCcceEEec
Q 004533 90 --PYKIENEYQTIE-------PAFHEKGPPYVLWAAKMAVDFHTGVPWVMCK 132 (746)
Q Consensus 90 --~y~iENEYg~~~-------~~~~~~d~~Y~~~L~~~~~~~gi~vP~~~~~ 132 (746)
.|.|=||=-+.. ..+...+.+|+...-+.+|+..-++.++.++
T Consensus 74 i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 74 IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 122778822110 0111234589988889999988888888765
No 27
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=94.61 E-value=0.039 Score=63.72 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.|+++++.||++|+|+.++-|-|....|. +++++=+|..-.+++|+.+.++||..++-. --=.+|.||.
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~- 142 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV- 142 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH-
Confidence 37999999999999999999999999997 556787888899999999999999988763 1225777763
Q ss_pred cCCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 79 VAGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 79 ~p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
.+||.... ...-..|.+..+-.++..|=.|. |+|
T Consensus 143 ----------------~~~GGW~~--~~~~~~F~~ya~~~~~~fgd~Vk~WiT 177 (474)
T PRK09852 143 ----------------TEYGSWRN--RKMVEFFSRYARTCFEAFDGLVKYWLT 177 (474)
T ss_pred ----------------HhcCCCCC--HHHHHHHHHHHHHHHHHhcCcCCeEEe
Confidence 34553210 00113455555556666655554 554
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.35 E-value=0.094 Score=52.34 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=41.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCC-----c---CCccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEP-----Q---KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep-----~---~g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
|+.+|+.||++|+|+|=+= |....- . ++.|.-.....|+.+|++|++.||.|++..+
T Consensus 22 W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 22 WREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 9999999999999998422 322221 1 2233334456899999999999999999853
No 29
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=93.81 E-value=0.086 Score=61.02 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.|+++|+.||++|+|+.++-|-|.-..|. +|+++-+|..-.+++|+.+.++||..++-.= -=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--------H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--------HFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHHH
Confidence 48999999999999999999999999997 5678888999999999999999999887731 1247777743
No 30
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.00 E-value=0.22 Score=62.84 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=33.6
Q ss_pred CcceEEEEEEECCCCC--CCeEEEeCCC-ceEEEEECCeecccc
Q 004533 518 RQLTWYKTTFRAPAGN--DPIALNLQSM-GKGEAWVNGQSIGRY 558 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~~--d~~~Ld~~g~-gKG~v~VNG~~iGRY 558 (746)
.+..|||.+|.+|+.- .-++|.+.|. ..-.|||||+.||+-
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~ 151 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFS 151 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccc
Confidence 4568999999999753 2589999987 457999999999963
No 31
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=92.88 E-value=0.14 Score=59.05 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++++.||++|+|+-++-|.|.-.+|. .|.++-+|..-.+++|+.+.++||.-++-.=- | .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-----F---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCcHHHHHc
Confidence 47999999999999999999999999996 57888899999999999999999987766311 3 478888642
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
- +|+ |+ ..-..|.+..+-.+++.|= |. |+|
T Consensus 127 G---------GW~--n~---------~~v~~F~~YA~~~~~~fgd-Vk~W~T 157 (469)
T PRK13511 127 G---------DWL--NR---------ENIDHFVRYAEFCFEEFPE-VKYWTT 157 (469)
T ss_pred C---------CCC--CH---------HHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 1 222 00 0113456666667777776 76 554
No 32
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=92.76 E-value=0.16 Score=55.35 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
|+.++..||++|+|||++|-. +-..|=++++++.+++||||||-.+
T Consensus 55 C~rDi~~l~~LgiNtIRVY~v-------------dp~~nHd~CM~~~~~aGIYvi~Dl~ 100 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRVYSV-------------DPSKNHDECMSAFADAGIYVILDLN 100 (314)
T ss_dssp HHHHHHHHHHHT-SEEEES----------------TTS--HHHHHHHHHTT-EEEEES-
T ss_pred HHHhHHHHHHcCCCEEEEEEe-------------CCCCCHHHHHHHHHhCCCEEEEecC
Confidence 788999999999999999842 2234789999999999999999854
No 33
>PLN02814 beta-glucosidase
Probab=92.72 E-value=0.13 Score=59.92 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++++.||+||+|+-++-|-|.-.+|. +|.++-+|..-.+++|+.+.++||..++-.= =|+ +|.||.+
T Consensus 78 ry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~- 148 (504)
T PLN02814 78 KYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED- 148 (504)
T ss_pred hhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH-
Confidence 48999999999999999999999999996 6888999999999999999999999776631 133 5777643
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
+||.... ...-..|.+..+-++++.|=.|+ |+|
T Consensus 149 ----------------~yGGW~n--~~~i~~F~~YA~~~f~~fgdrVk~WiT 182 (504)
T PLN02814 149 ----------------EYGGWIN--RKIIEDFTAFADVCFREFGEDVKLWTT 182 (504)
T ss_pred ----------------hcCCcCC--hhHHHHHHHHHHHHHHHhCCcCCEEEe
Confidence 4553210 01123466667777777776676 554
No 34
>PLN02998 beta-glucosidase
Probab=92.70 E-value=0.13 Score=59.90 Aligned_cols=104 Identities=19% Similarity=0.323 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++|+.||+||+|+-++-|-|.-.+|. .|.++-+|..-.+++|+.+.++||..++--=- | -+|.||..
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-----~---dlP~~L~~- 153 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-----F---DLPQALED- 153 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-----C---CCCHHHHH-
Confidence 48999999999999999999999999996 67788889999999999999999987766311 3 35777643
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEEe
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVMC 131 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~~ 131 (746)
+||.... ...-..|.+..+-.+++.|=.|+ |+|-
T Consensus 154 ----------------~yGGW~n--~~~v~~F~~YA~~~~~~fgdrVk~WiT~ 188 (497)
T PLN02998 154 ----------------EYGGWLS--QEIVRDFTAYADTCFKEFGDRVSHWTTI 188 (497)
T ss_pred ----------------hhCCcCC--chHHHHHHHHHHHHHHHhcCcCCEEEEc
Confidence 4553210 00113456666666777776676 5653
No 35
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=92.68 E-value=0.16 Score=58.59 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++++.||+||+|+-++-|-|.-.+|. +|+++=+|..-.+++|+.+.++||..++--=- | -+|.||.+.
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~~ 125 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-----F---DTPEALHSN 125 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-----C---CCcHHHHHc
Confidence 47899999999999999999999999996 57788889999999999999999998877421 3 478888642
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
- +|+ |+ ..-..|.+..+-++++.| +|+ |+|
T Consensus 126 G---------GW~--n~---------~~v~~F~~YA~~~f~~fg-dVk~WiT 156 (467)
T TIGR01233 126 G---------DFL--NR---------ENIEHFIDYAAFCFEEFP-EVNYWTT 156 (467)
T ss_pred C---------CCC--CH---------HHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 1 121 10 012356677777777778 576 554
No 36
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=92.57 E-value=0.16 Score=58.79 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.|+++|+.||+||+|+-++-|-|.-.+|. +|+++=+|..-.+++|+.+.++||..++-.= =| -+|.||..
T Consensus 74 ry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~~ 145 (478)
T PRK09593 74 HYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLIE 145 (478)
T ss_pred hhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHHh
Confidence 48999999999999999999999999997 6678888889999999999999998776621 13 46777743
Q ss_pred cCCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 79 VAGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 79 ~p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
+||.... ...-..|.+..+-.+++.|=.|. |+|
T Consensus 146 -----------------~~GGW~n--~~~v~~F~~YA~~~~~~fgdrVk~WiT 179 (478)
T PRK09593 146 -----------------EYGGWRN--RKMVGFYERLCRTLFTRYKGLVKYWLT 179 (478)
T ss_pred -----------------hcCCCCC--hHHHHHHHHHHHHHHHHhcCcCCEEEe
Confidence 4443210 00113455666666666666666 554
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=92.44 E-value=0.33 Score=57.80 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=34.9
Q ss_pred CcceEEEEEEECCCCC--CCeEEEeCCC-ceEEEEECCeeccccc
Q 004533 518 RQLTWYKTTFRAPAGN--DPIALNLQSM-GKGEAWVNGQSIGRYW 559 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~~--d~~~Ld~~g~-gKG~v~VNG~~iGRYW 559 (746)
.+..|||.+|.+|+.. ..++|.+.|. ....|||||+.||+--
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~ 108 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHK 108 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEc
Confidence 4679999999999642 3689999988 5699999999999754
No 38
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=92.14 E-value=0.19 Score=58.20 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.|+++++.||+||+|+-++-|-|.-.+|. +|+++=+|..-.+++|+.+.++||.-++-.=- | -+|.||..
T Consensus 68 ry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-----~---dlP~~L~~ 139 (476)
T PRK09589 68 RYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-----F---EMPYHLVT 139 (476)
T ss_pred hhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCCHHHHH
Confidence 38999999999999999999999999997 56678888899999999999999987766311 3 36777643
Q ss_pred cCCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEEe
Q 004533 79 VAGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVMC 131 (746)
Q Consensus 79 ~p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~~ 131 (746)
+||.... ...-..|.+..+-.+++.|=.|. |+|-
T Consensus 140 -----------------~yGGW~n--~~~i~~F~~YA~~~f~~fgdrVk~WiT~ 174 (476)
T PRK09589 140 -----------------EYGGWRN--RKLIDFFVRFAEVVFTRYKDKVKYWMTF 174 (476)
T ss_pred -----------------hcCCcCC--hHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4553210 00113455666666777665565 5553
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=91.30 E-value=0.54 Score=46.81 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccC-------CcCCcc-----ccCCchhHHHHHHHHHHCCcEEEEecCccccc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHE-------PQKGQY-----DFSGRNDIIRFIKEIQSQGLYVCLRIGPFIES 65 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~he-------p~~g~~-----df~G~~dl~~f~~~a~~~gl~vilrpGPYIcA 65 (746)
+.+.|..+|++|+|+|.+-=++..-. =.+..| .|....+|.++++.|+++||.||+-.=|==++
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 34567779999999998854432221 112222 45667899999999999999999886443333
No 40
>PLN02849 beta-glucosidase
Probab=91.11 E-value=0.26 Score=57.46 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.|+++|+.||+||+|+-++-|-|.-.+|. .|.++=+|..-.+++|+.+.++||.-++--=- | -+|.||.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~-- 149 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-----Y---DHPQYLE-- 149 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-----C---CCcHHHH--
Confidence 37999999999999999999999999996 37788889999999999999999997766211 2 3566664
Q ss_pred CCeeeecCCCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc-eEE
Q 004533 80 AGIVFRSDNKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP-WVM 130 (746)
Q Consensus 80 p~~~~Rt~~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP-~~~ 130 (746)
++||.... ...-..|.+..+-.+++.|=.|+ |+|
T Consensus 150 ---------------~~yGGW~n--r~~v~~F~~YA~~~f~~fgDrVk~WiT 184 (503)
T PLN02849 150 ---------------DDYGGWIN--RRIIKDFTAYADVCFREFGNHVKFWTT 184 (503)
T ss_pred ---------------HhcCCcCC--chHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 35554210 00123456666666777766676 555
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=91.10 E-value=0.42 Score=60.37 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=33.7
Q ss_pred CcceEEEEEEECCCC--CC-CeEEEeCCC-ceEEEEECCeeccc
Q 004533 518 RQLTWYKTTFRAPAG--ND-PIALNLQSM-GKGEAWVNGQSIGR 557 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~--~d-~~~Ld~~g~-gKG~v~VNG~~iGR 557 (746)
.+..|||.+|.+|+. .. .++|.+.|. ..-.|||||+.+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 467999999999964 22 589999987 67999999999994
No 42
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=90.82 E-value=0.31 Score=55.25 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCEEEEccc-ccccCCcC----CccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLDVIQTYVF-WNLHEPQK----GQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~-W~~hep~~----g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
++.+..||.+|||+|++++. |.+ ++.. ....=+--.-|++.|+-|++.||+|+|-
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD 135 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLID 135 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEE
Confidence 88999999999999999999 554 5542 2221111127899999999999999998
No 43
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.33 E-value=0.49 Score=54.20 Aligned_cols=70 Identities=26% Similarity=0.426 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHcCCCEEEEcccccccCCcCCc--cccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeee
Q 004533 1 MWPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQ--YDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 1 ~W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~--~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~ 78 (746)
.++++++.||+||+|+.++-|-|...-|..+. .+=.|-.-.++.|+.|.+.||.-++-.=- |+ +|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-----fd---~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-----FD---LPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-----cC---CcHHHhh
Confidence 37899999999999999999999999997655 77788899999999999999998876422 33 6888865
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=87.69 E-value=1.8 Score=41.68 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCEEEEccc----ccc-----cCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCc
Q 004533 4 SLIAKAKEGGLDVIQTYVF----WNL-----HEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPI 74 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~yv~----W~~-----hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~ 74 (746)
+-++.+|++|.|+|.++.= |.+ |.+.|+- ...-|.+++++|++.||.|++|...- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4578899999999999653 443 3344443 12256999999999999999996543 22333345688
Q ss_pred eeeecC
Q 004533 75 WLHDVA 80 (746)
Q Consensus 75 Wl~~~p 80 (746)
|+...+
T Consensus 79 W~~~~~ 84 (132)
T PF14871_consen 79 WFVRDA 84 (132)
T ss_pred eeeECC
Confidence 887644
No 45
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=85.91 E-value=1.2 Score=49.32 Aligned_cols=51 Identities=27% Similarity=0.541 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcC-CccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQK-GQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~-g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
+|.|+.||+.|+|.|+.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|-.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldf 78 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDF 78 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEee
Confidence 4789999999999999998 44 4444 555554 55556666678999999984
No 46
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.30 E-value=1.2 Score=46.73 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCC----cc-----ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKG----QY-----DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g----~~-----df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.+.|.-+|++|+|+|.+-=++......-| .| .|.+..+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688899999999998644442211111 11 24456799999999999999999764
No 47
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=83.42 E-value=2.1 Score=52.23 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=42.5
Q ss_pred hHHHHHHHHHcCCCEEEEc-cc-------ccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 2 WPSLIAKAKEGGLDVIQTY-VF-------WNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~y-v~-------W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
|++.|..+|++|+|+|+.= |+ |.++-.. .=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678999999999999863 22 5443210 001245667899999999999999999873
No 48
>PRK09936 hypothetical protein; Provisional
Probab=82.60 E-value=2.5 Score=45.80 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=42.7
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCc-hhHHHHHHHHHHCCcEEEEe
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGR-NDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~-~dl~~f~~~a~~~gl~vilr 58 (746)
|+.+++.+|+.|++|+ .|-|.-. |.=||.|. .+|.+-++.|++.||.|+|.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 9999999999999987 5667665 22288765 48999999999999999986
No 49
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=82.53 E-value=1.4 Score=54.11 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCC--CCceeee--
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGG--LPIWLHD-- 78 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg--~P~Wl~~-- 78 (746)
+++|++||++|+|+|+|- |-|+. .+|+++|-+.||+||--+ | .|| .|+ -|.|...
T Consensus 324 ~~dl~lmk~~n~N~vRts-----HyP~~-----------~~~ydLcDelGllV~~Ea-~---~~~-~~~~~~~~~~k~~~ 382 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-----HYPNS-----------EEFYDLCDELGLLVIDEA-M---IET-HGMPDDPEWRKEVS 382 (808)
T ss_pred HHHHHHHHHcCCCEEEec-----CCCCC-----------HHHHHHHHHhCcEEEEec-c---hhh-cCCCCCcchhHHHH
Confidence 578999999999999996 66643 579999999999999774 2 223 222 2666643
Q ss_pred --cCCeeeec-CCCCce---eeccCC
Q 004533 79 --VAGIVFRS-DNKPYK---IENEYQ 98 (746)
Q Consensus 79 --~p~~~~Rt-~~~~y~---iENEYg 98 (746)
...|.-|. |.|... +-||-|
T Consensus 383 ~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 383 EEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred HHHHHHHHhccCCCcEEEEecccccc
Confidence 12232343 344432 889976
No 50
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=80.57 E-value=1.6 Score=47.84 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=68.0
Q ss_pred ccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec--CCeeee--------cCCCC
Q 004533 21 VFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV--AGIVFR--------SDNKP 90 (746)
Q Consensus 21 v~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~--p~~~~R--------t~~~~ 90 (746)
.=|...+|++|.|+|+ --++..+-|+++||.+--- +.| |-. -.|.|+..+ ++-.++ |--..
T Consensus 67 mKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 67 MKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred cccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccccChHHHHHHHHHHHHHHHHh
Confidence 3499999999999999 5778888899999965411 222 433 688888652 110011 11111
Q ss_pred ce-------eeccCCC-------CCcccCCCCchHHHHHHHHHHhcCCCcceEEecC
Q 004533 91 YK-------IENEYQT-------IEPAFHEKGPPYVLWAAKMAVDFHTGVPWVMCKQ 133 (746)
Q Consensus 91 y~-------iENEYg~-------~~~~~~~~d~~Y~~~L~~~~~~~gi~vP~~~~~~ 133 (746)
|+ |-||==. ...+.+..+.+||++.-+.||+.+-+.-++.++-
T Consensus 138 Ykg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY 194 (345)
T COG3693 138 YKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDY 194 (345)
T ss_pred ccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecc
Confidence 33 7777321 1122334678999999999999887777887764
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=80.27 E-value=3.8 Score=49.13 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHH-HHHHHcCCCEEEE-ccccc-------ccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 4 SLI-AKAKEGGLDVIQT-YVFWN-------LHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 4 d~l-~k~ka~G~n~v~~-yv~W~-------~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
++| .-+|++|+|+|.. .|+.+ +.-.. .=.-.|.+..||.+|++.|++.||.|||-.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 343 7789999999998 66543 21100 001145567899999999999999999873
No 52
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.54 E-value=3.7 Score=48.50 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------ccccCCcC--CccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 4 SLIAKAKEGGLDVIQT-YVF-------WNLHEPQK--GQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~-------W~~hep~~--g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
++|.-+|++|+|+|.. .|+ |.+.-... =.-.|.+..+|.+|++.|++.||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5688899999999986 232 44322110 01135667899999999999999999873
No 53
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=78.27 E-value=4.2 Score=47.12 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEEc-ccccc-----cCCcCCcc--------------ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 4 SLIAKAKEGGLDVIQTY-VFWNL-----HEPQKGQY--------------DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~y-v~W~~-----hep~~g~~--------------df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
+.|.-+|++|+++|-+- ++-+. |-=.+-.| .|....||.++++.|++.||+|||-.
T Consensus 26 ~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 26 ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55677899999999774 43322 22111111 35567899999999999999999873
No 54
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.06 E-value=3.9 Score=48.29 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEEc-ccccccCCcCCcc----------ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTY-VFWNLHEPQKGQY----------DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~y-v~W~~hep~~g~~----------df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.++|.-+|++|+|+|-+- ++=+- + ....| .|.+..||.++++.|+++||+|||-.
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~~-~-~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVSP-Q-KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccCC-C-CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567888999999999773 33211 0 00122 24566899999999999999999874
No 55
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=76.56 E-value=6.2 Score=42.83 Aligned_cols=115 Identities=23% Similarity=0.423 Sum_probs=56.0
Q ss_pred hHHHHHHHHHcCCCEEEEccc--cccc-C-------C----cCCccccCCc-----hhHHHHHHHHHHCCcEEEEec---
Q 004533 2 WPSLIAKAKEGGLDVIQTYVF--WNLH-E-------P----QKGQYDFSGR-----NDIIRFIKEIQSQGLYVCLRI--- 59 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~--W~~h-e-------p----~~g~~df~G~-----~dl~~f~~~a~~~gl~vilrp--- 59 (746)
|+.-|+..|+.|||+|++=++ |.-+ . | .++.+||+.- ..+++.|+.|.+.||.+.|-|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg 111 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWG 111 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-H
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 566789999999999999887 4322 1 1 1223666543 479999999999999986553
Q ss_pred CcccccccCCCCCCceeeecCC------e--eeecC-CCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcC
Q 004533 60 GPFIESEWTYGGLPIWLHDVAG------I--VFRSD-NKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFH 123 (746)
Q Consensus 60 GPYIcAE~~~Gg~P~Wl~~~p~------~--~~Rt~-~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~g 123 (746)
+||+-.-|-.| |..+..... + +++.. |.-|.+=||+. ......++.+.+.+..++..
T Consensus 112 ~~~~~~~Wg~~--~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~-----~~~~~~~~w~~~~~~i~~~d 177 (289)
T PF13204_consen 112 CPYVPGTWGFG--PNIMPPENAERYGRYVVARYGAYPNVIWILGGDYF-----DTEKTRADWDAMARGIKEND 177 (289)
T ss_dssp HHHH---------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS-------TTSSHHHHHHHHHHHHHH-
T ss_pred Ccccccccccc--ccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccC-----CCCcCHHHHHHHHHHHHhhC
Confidence 34443444443 222211000 0 11111 22244777771 12356677777777776653
No 56
>PLN02960 alpha-amylase
Probab=75.51 E-value=6 Score=48.97 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------ccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 4 SLIAKAKEGGLDVIQT-YVF-------WNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~-------W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
+.|.-+|++|+|+|+. .|+ |.+.-.. .=.-.|.+..+|..|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4588899999999997 343 5432110 011134566899999999999999999884
No 57
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=75.13 E-value=6.8 Score=42.68 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHH---HCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQ---SQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~---~~gl~vilrp 59 (746)
.|.|+-+|++|+|-|+.-| ||----..|.=-=.|+.|+.+.+++|+ ..||+|++..
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 5889999999999999876 665544555545568899999998876 5699999983
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=75.12 E-value=6.2 Score=47.45 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEE-ccc-------ccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 6 IAKAKEGGLDVIQT-YVF-------WNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 6 l~k~ka~G~n~v~~-yv~-------W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
|.-+|++|+|+|.. .|+ |.+.-.. .=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999985 342 3321110 001146677899999999999999999883
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=72.95 E-value=7.3 Score=47.69 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=37.5
Q ss_pred HHHHHHcCCCEEEE-ccc-------ccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 6 IAKAKEGGLDVIQT-YVF-------WNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 6 l~k~ka~G~n~v~~-yv~-------W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
|.-+|++|+|+|.. .|+ |.+.-.. .=.-.|.+..||.+|++.|+++||.|||-
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 36779999999987 343 3321110 00113556789999999999999999988
No 60
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.76 E-value=7.4 Score=46.08 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-ccccccCCcC-Ccc----------ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTY-VFWNLHEPQK-GQY----------DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~y-v~W~~hep~~-g~~----------df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.++|.-+|++|+++|-+- ++-+ |.. ..| +|....||.++++.|+++||+|||-.
T Consensus 36 ~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 36 TQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477889999999999773 4321 111 112 35567899999999999999999874
No 61
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=71.87 E-value=3.2 Score=45.58 Aligned_cols=65 Identities=15% Similarity=0.409 Sum_probs=46.9
Q ss_pred HHHHHHcCCCEEEEc--ccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCCceeeec
Q 004533 6 IAKAKEGGLDVIQTY--VFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLPIWLHDV 79 (746)
Q Consensus 6 l~k~ka~G~n~v~~y--v~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P~Wl~~~ 79 (746)
.+.+-..-||.|..- .-|...||.+|+|+|+ ..+++++-|+++||.|---+ -| |.. ..|.|+...
T Consensus 27 ~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv---W~~-~~P~w~~~~ 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV---WHS-QTPDWVFNL 93 (320)
T ss_dssp HHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE---ESS-SS-HHHHTS
T ss_pred HHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE---Ecc-cccceeeec
Confidence 444555678888875 5599999999999999 89999999999999986321 11 544 789999763
No 62
>PRK12568 glycogen branching enzyme; Provisional
Probab=71.49 E-value=8.2 Score=47.13 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEE-ccc-------ccccCC--cCCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 5 LIAKAKEGGLDVIQT-YVF-------WNLHEP--QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 5 ~l~k~ka~G~n~v~~-yv~-------W~~hep--~~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.|.-+|++|+|+|+. .|+ |.+.-. -.=.-.|.+..+|..|++.|+++||.|||-.
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 367889999999986 332 543210 0001145667899999999999999999874
No 63
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.33 E-value=6.3 Score=47.14 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCEEEE-ccc---------------ccccC-----CcCCccc----cC--CchhHHHHHHHHHHCCcEEE
Q 004533 4 SLIAKAKEGGLDVIQT-YVF---------------WNLHE-----PQKGQYD----FS--GRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~---------------W~~he-----p~~g~~d----f~--G~~dl~~f~~~a~~~gl~vi 56 (746)
+.|.-+|++|+|+|+. .|+ |.+.- |+ +.|- |. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4588999999999987 232 44431 11 1111 11 13689999999999999999
Q ss_pred Eec
Q 004533 57 LRI 59 (746)
Q Consensus 57 lrp 59 (746)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 873
No 64
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=71.11 E-value=9.2 Score=42.00 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEccc-------------ccccCC-cCCc-cccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVF-------------WNLHEP-QKGQ-YDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~-------------W~~hep-~~g~-~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
++.|++++++|||+|-.=|- |.---+ .+|. -.|+ -|+.+|+.|++.||.|....
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE
Confidence 46789999999999966554 332111 1121 1244 79999999999999999664
No 65
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.64 E-value=9.5 Score=46.37 Aligned_cols=57 Identities=9% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEE-ccccccc-----------------CCcCC-----ccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQT-YVFWNLH-----------------EPQKG-----QYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~-yv~W~~h-----------------ep~~g-----~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.+.|.-+|++|+|+|-+ .++=+.| --.+- .-.|....||..+++.|++.||+|||-.
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999986 3433322 21111 1235567899999999999999999874
No 66
>PRK14706 glycogen branching enzyme; Provisional
Probab=70.46 E-value=8.5 Score=46.43 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHHcCCCEEEE-cc--c-----ccccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 7 AKAKEGGLDVIQT-YV--F-----WNLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 7 ~k~ka~G~n~v~~-yv--~-----W~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.-+|+||+|+|+. .| + |.+.--. .=.-.|.+..||..|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999996 22 1 4332110 001124566899999999999999999873
No 67
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=68.94 E-value=7.4 Score=45.88 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCEEEEc-ccccccCCcCCcc----------ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 2 WPSLIAKAKEGGLDVIQTY-VFWNLHEPQKGQY----------DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~y-v~W~~hep~~g~~----------df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
+.+.|.-+|++|+|+|-.- |+ .... ....| .|.+..|+.++++.|++.||+|||-.
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~-~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFF-QSPL-RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCc-CCCC-CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4578889999999999763 32 1100 01111 25567899999999999999999873
No 68
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.46 E-value=11 Score=31.24 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 4 SLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 17 ~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 17 AVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 56778899999999999732 333 58777765 5778999999999988764
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=68.28 E-value=10 Score=48.92 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHcCCCEEEE-ccc-------ccccCC--cCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 6 IAKAKEGGLDVIQT-YVF-------WNLHEP--QKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 6 l~k~ka~G~n~v~~-yv~-------W~~hep--~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
|.-+|+||+|+|+. .|+ |.+.-- ..=.-.|.+..||..|++.|+++||.|||-
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 57899999999987 342 543211 111123556789999999999999999987
No 70
>PRK10785 maltodextrin glucosidase; Provisional
Probab=67.74 E-value=11 Score=44.95 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEE-ccccc--ccCCcCCcc-----ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQT-YVFWN--LHEPQKGQY-----DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~-yv~W~--~hep~~g~~-----df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.+.|.-+|++|+|+|-. .||=+ .|-=....| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36788899999999987 45522 111111111 25567899999999999999999874
No 71
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=67.64 E-value=19 Score=39.70 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCEEEEcc-------cccccCCcCCcccc--CCchhHHHHHHHHHHCCcEEEEecCcccccccCCCCCC
Q 004533 3 PSLIAKAKEGGLDVIQTYV-------FWNLHEPQKGQYDF--SGRNDIIRFIKEIQSQGLYVCLRIGPFIESEWTYGGLP 73 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv-------~W~~hep~~g~~df--~G~~dl~~f~~~a~~~gl~vilrpGPYIcAE~~~Gg~P 73 (746)
+..|+.+|+.|+|+|-+=| .+..-.|..-+..- ....|+.++++.++++|||+|.|.= |-- | |
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv---~Fk-D----~ 87 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIV---VFK-D----P 87 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEE---Eec-C----h
Confidence 4678899999999997644 45444443332221 1236999999999999999999952 100 0 0
Q ss_pred ceee-ecCCeeeecC-CCCceeeccCCCCCcccCCCCchHHHHHHHHHHhcCCCcc
Q 004533 74 IWLH-DVAGIVFRSD-NKPYKIENEYQTIEPAFHEKGPPYVLWAAKMAVDFHTGVP 127 (746)
Q Consensus 74 ~Wl~-~~p~~~~Rt~-~~~y~iENEYg~~~~~~~~~d~~Y~~~L~~~~~~~gi~vP 127 (746)
-|. .+|+.-+++. +..|+ +|+--...+.|...-.+|+-.+++.+.+.|++.-
T Consensus 88 -~la~~~pe~av~~~~G~~w~-d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEI 141 (316)
T PF13200_consen 88 -VLAEAHPEWAVKTKDGSVWR-DNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEI 141 (316)
T ss_pred -HHhhhChhhEEECCCCCccc-CCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 011 1344334322 22344 2221112222333345777777777767787643
No 72
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.86 E-value=14 Score=43.76 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEEc-ccccccCCcCCcc--------ccCCc----hhHHHHHHHHHHCCcEEEEecCccccccc--
Q 004533 3 PSLIAKAKEGGLDVIQTY-VFWNLHEPQKGQY--------DFSGR----NDIIRFIKEIQSQGLYVCLRIGPFIESEW-- 67 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~y-v~W~~hep~~g~~--------df~G~----~dl~~f~~~a~~~gl~vilrpGPYIcAE~-- 67 (746)
++.|..|+.+.||.|+.| ..|-+|.|-|+.= |+.|+ .-+...|+.|++.|+.++.=--=|-+-+.
T Consensus 121 ~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~ 200 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYE 200 (559)
T ss_dssp HHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--
T ss_pred HHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcc
Confidence 467899999999999999 6799999987644 23343 36789999999999999854322322222
Q ss_pred CCCCCCceeee
Q 004533 68 TYGGLPIWLHD 78 (746)
Q Consensus 68 ~~Gg~P~Wl~~ 78 (746)
..|-.|.|.+-
T Consensus 201 ~~gv~~eW~ly 211 (559)
T PF13199_consen 201 EDGVSPEWGLY 211 (559)
T ss_dssp S--SS-GGBEE
T ss_pred cccCCchhhhh
Confidence 36678888864
No 73
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.92 E-value=12 Score=33.12 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=33.1
Q ss_pred ceEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeec-cCCCceEEEEEecCCCc
Q 004533 402 PLDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHL-RQGTNDGALLSVTVGLP 458 (746)
Q Consensus 402 ~L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l-~~g~~~l~iLven~Gr~ 458 (746)
.|++.+-....+-||||+++|.....+ .+.+ .+ ..|.++|.+ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 444444456999999999998776432 2333 34 678888887 6777764
No 74
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.91 E-value=16 Score=45.27 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=42.5
Q ss_pred hHHHHHHHHHcCCCEEEEcccccc-----cC---CcC--CccccCCchhHHHHHHHHHHCCcEEEEecCc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNL-----HE---PQK--GQYDFSGRNDIIRFIKEIQSQGLYVCLRIGP 61 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~-----he---p~~--g~~df~G~~dl~~f~~~a~~~gl~vilrpGP 61 (746)
|.+.|.-++++|+++|-+-=++.. |- ... -.-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 18 ~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 18 AAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 567888999999999966322221 11 111 1223568899999999999999999988543
No 75
>PLN02361 alpha-amylase
Probab=62.20 E-value=18 Score=41.21 Aligned_cols=55 Identities=4% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEEcccccc---cCCcCCc-c----ccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 4 SLIAKAKEGGLDVIQTYVFWNL---HEPQKGQ-Y----DFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~yv~W~~---hep~~g~-~----df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
+.|.-+|++|+++|-+-=+..- |-=.+.. | .|....+|.++++.|++.||.||+-
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5677789999999987543321 2111222 1 2556689999999999999999975
No 76
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.65 E-value=17 Score=39.50 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCc-CCccccCCch--hHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQ-KGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~-~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||.+=.+++-..++... -+.|+|+-.+ |..++++.+++.|++|++-.=|+|+..
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 577899999998776555554444332 2466665332 899999999999999999999999753
No 77
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=61.47 E-value=20 Score=43.01 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------ccccCCcC--CccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 4 SLIAKAKEGGLDVIQT-YVF-------WNLHEPQK--GQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~-------W~~hep~~--g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
+.|--+|+||+++|+. .|. |.+----. =.=.|..-.||.+||+.|+++||-|||-
T Consensus 169 ~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 169 ELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5677899999999997 232 55422100 0113445579999999999999999998
No 78
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=61.28 E-value=13 Score=37.13 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCceEEEEECCeecccccc-cccCCCCCCceEEEeeecccccc--eeeeecccccccccCcccccccceEEEEEeccC
Q 004533 542 SMGKGEAWVNGQSIGRYWV-SFKTSKGNPSQTQYAVNTVTSIH--FCAIIKATNTYHVPRAFLKPTGNLLVLLEEENG 616 (746)
Q Consensus 542 g~gKG~v~VNG~~iGRYW~-~~~~~~ggPqqtl~~~~~~~~~~--~~~~~~~~~~Y~vP~~~Lk~g~N~lvv~E~~~~ 616 (746)
.-++=+|.||| ..+..+. .. ++..+. ...|+| .+... .+-||+..|++|.|+|.|=-..|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~-----~~d~~~----~r~g~~~G~~~~~----~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPF-----GNDNAI----YRSGIHRGNYRLY----EFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp TT-EEEEEETT-EE----------------S------GGGT---S---EE----EEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCCEEEEEcC-ccCCcccccc-----CCCCce----eeCceecccEEEE----EEEEcHHHEEeccEEEEEEEccCC
Confidence 34566899999 6666653 23 222233 122222 11111 257999999999999987544443
No 79
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=61.02 E-value=6.9 Score=38.58 Aligned_cols=65 Identities=26% Similarity=0.186 Sum_probs=35.4
Q ss_pred EeeeccCCCCC--CCCCCC-----cCccccCChhHHHHHHcCCCCccEEeec----CCCccC-CCCC--CCceEEEEEEE
Q 004533 679 IVFASFGNPDG--DCERYA-----VGSCHSSHSQGVVERACIGKSRCSIPLL----SRYFGG-DPCP--GIHKALLVDAQ 744 (746)
Q Consensus 679 I~~A~YGr~~~--~C~~~~-----~~~C~~~~sl~iV~~~C~Gk~~C~i~a~----~~~Fg~-DPCp--gt~KYL~V~Y~ 744 (746)
|..|.||.... .+.... ...+..-+.+ +.=+|.=+.++-.... ....|. |||| |..|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVT--ipLq~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVT--IPLQALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEh--hhhhhEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 89999999642 332211 1122222332 2224444444433222 112232 9999 88999999998
Q ss_pred e
Q 004533 745 C 745 (746)
Q Consensus 745 C 745 (746)
.
T Consensus 133 f 133 (151)
T PF11875_consen 133 F 133 (151)
T ss_pred E
Confidence 5
No 80
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=60.09 E-value=14 Score=39.49 Aligned_cols=85 Identities=9% Similarity=-0.076 Sum_probs=63.2
Q ss_pred ccCCCCceeeecCCCCeEEEEeeeccCCCC---CCCCCC----CcCccccCChhHHHHHHcCCCCccEEeecCCCccCCC
Q 004533 659 KFGKKPTVQPSCPLGKKISKIVFASFGNPD---GDCERY----AVGSCHSSHSQGVVERACIGKSRCSIPLLSRYFGGDP 731 (746)
Q Consensus 659 ~~~~~~~~~LsCp~G~~Is~I~~A~YGr~~---~~C~~~----~~~~C~~~~sl~iV~~~C~Gk~~C~i~a~~~~Fg~DP 731 (746)
.+...+++...|+....+ .++.+.+++.. ..|+.. ....|.....+..+...|.+++.|++..++.-++ -+
T Consensus 138 t~~~p~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~ 215 (265)
T KOG4729|consen 138 TFCTPSPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CR 215 (265)
T ss_pred eEecCCCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-cc
Confidence 356666788888888777 68888888864 355532 2334444567788899999999999999999887 57
Q ss_pred CC-CCceEEEEEEEe
Q 004533 732 CP-GIHKALLVDAQC 745 (746)
Q Consensus 732 Cp-gt~KYL~V~Y~C 745 (746)
|- +-.+|+-|.+.|
T Consensus 216 ~~~~~~~~~~~n~e~ 230 (265)
T KOG4729|consen 216 HGHLHKVYVTVTEEI 230 (265)
T ss_pred ccceeEEEEEecccc
Confidence 74 445888888776
No 81
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=59.89 E-value=14 Score=47.81 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCEEEE-cccccccCCc---CC-----cc----------ccC--CchhHHHHHHHHHHCCcEEEEec
Q 004533 4 SLIAKAKEGGLDVIQT-YVFWNLHEPQ---KG-----QY----------DFS--GRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~W~~hep~---~g-----~~----------df~--G~~dl~~f~~~a~~~gl~vilrp 59 (746)
+.|.-+|++|+|+|+. .|+=+..+.. .| -| .|. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577899999999987 3442221111 00 01 133 67899999999999999999883
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.11 E-value=14 Score=38.99 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=37.5
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
|++.|+.++++|+..|++.+. ..|+ .....+|+ ..++..+.++++++||.|.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCce
Confidence 789999999999999999642 2221 01122333 3478999999999999876
No 83
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=58.42 E-value=4.4 Score=42.31 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 5 LIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 5 ~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
..+++.++|-+.|.+.++|....+..-.+..+ ++.++.+.|++.||.||+-
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 45788999999999999997776655455555 8999999999999999998
No 84
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=58.29 E-value=35 Score=34.07 Aligned_cols=87 Identities=21% Similarity=0.178 Sum_probs=40.3
Q ss_pred ceEecCcceEEEEEECCEEEEEee---c-CCCcee---eEEEeeeeccCCCceEEEEEecCCCc---ccc---ccccccc
Q 004533 402 PLDVQSHGHILHAFVNGEYTGSAH---G-SHDNVS---FTLRNTVHLRQGTNDGALLSVTVGLP---DSG---AFLERKV 468 (746)
Q Consensus 402 ~L~v~~~~d~~~vfvng~~~G~~~---~-~~~~~~---~~~~~~~~l~~g~~~l~iLven~Gr~---n~G---~~~~~~~ 468 (746)
.|.|... .+-.+||||+.||... + ..-.+. .++.++--|++|.|+|.+++-+.... .++ .......
T Consensus 7 ~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~~~~ 85 (172)
T PF08531_consen 7 RLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARYGGR 85 (172)
T ss_dssp EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB---
T ss_pred EEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccccccccccccccccCCC
Confidence 3444432 4788999999999644 1 111111 12333333788999999999764432 111 1111233
Q ss_pred cceeE-EEE---CCee---cccCCceEe
Q 004533 469 AGVHR-VRV---QDKS---FTNCSWGYQ 489 (746)
Q Consensus 469 kGi~g-V~l---~~~~---l~~~~W~~~ 489 (746)
.+++. +.+ +|.. .++.+|+..
T Consensus 86 ~~l~~~l~i~~~DG~~~~i~TD~sW~~~ 113 (172)
T PF08531_consen 86 PALLAQLEITYADGTTEVIVTDESWKCS 113 (172)
T ss_dssp -EEEEEEEE---TTEEEE-E-STTSEEE
T ss_pred ceeEEEEEEEecCCCEEEeccCCCeeee
Confidence 45554 555 4542 356778753
No 85
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.89 E-value=24 Score=44.10 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCC-------------ccccCCchhHHHHHHHHHHCCcEEEEecCc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKG-------------QYDFSGRNDIIRFIKEIQSQGLYVCLRIGP 61 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g-------------~~df~G~~dl~~f~~~a~~~gl~vilrpGP 61 (746)
|.++|.-++++|+|+|-.-=++. ..+| .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 22 ~~~~l~YL~~LGis~IyLsPi~~---a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 22 AAELVPYFADLGVSHLYLSPILA---ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHhHHHHHcCCCEEEECcCcc---CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56788899999999996632221 1111 112457789999999999999999987654
No 86
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=56.91 E-value=15 Score=39.44 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=43.9
Q ss_pred cccchhhhccC---CCCCceEEEEEEeecCCCC-----CCCceEecCcceEEEEEECCEEEEEee
Q 004533 369 AEGLLDQISAA---KDASDYFWYTFRFHYNSSN-----AQAPLDVQSHGHILHAFVNGEYTGSAH 425 (746)
Q Consensus 369 ~p~~~Eql~~t---~d~~gy~~Y~t~~~~~~~~-----~~~~L~v~~~~d~~~vfvng~~~G~~~ 425 (746)
.|.++-++++. +|..|.+||+.++.++.+. +...|++.+.+-.|.|+|||.-+=...
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~ 134 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHE 134 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccc
Confidence 45567777775 6789999999999876543 456888999999999999997654433
No 87
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=56.78 E-value=23 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=42.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCcc----------ccCCchhHHHHHHHHHHCCcEEEEecCc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQY----------DFSGRNDIIRFIKEIQSQGLYVCLRIGP 61 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~----------df~G~~dl~~f~~~a~~~gl~vilrpGP 61 (746)
|.+.|.-+|++|+|+|-+-=++-.......-| .|.|..||.++++.|+++||.|||-.=|
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 67888999999999997643332111111111 2557889999999999999999987543
No 88
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=56.17 E-value=12 Score=41.99 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecCccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFI 63 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYI 63 (746)
..-|++|+++|+..|-| ++|.|+...=+. ...+..+++.|++.||.|++-..|=+
T Consensus 17 ~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp HHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred HHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 56799999999987655 688888543221 13788999999999999999987643
No 89
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=55.48 E-value=11 Score=31.56 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=24.3
Q ss_pred eEecCcceEEEEEECCEEEEEeecCCCceeeEEEeeeeccCCCceEEE
Q 004533 403 LDVQSHGHILHAFVNGEYTGSAHGSHDNVSFTLRNTVHLRQGTNDGAL 450 (746)
Q Consensus 403 L~v~~~~d~~~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~l~i 450 (746)
|.|.+.=..|.|||||+++|... ..+. .++.|.++|.|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 45555556799999999999433 1221 15677666655
No 90
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.92 E-value=32 Score=37.54 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCC--EEEEcccccccCCcCCccccCCc--hhHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLD--VIQTYVFWNLHEPQKGQYDFSGR--NDIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n--~v~~yv~W~~hep~~g~~df~G~--~dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.|+. +|-+=+.|. ..-|.|.|+-. -|..++++..++.|+++++-.=|||+.+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 4678899999975 444444452 34577776533 3899999999999999999999999864
No 91
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=53.29 E-value=29 Score=29.40 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=24.4
Q ss_pred CcceEEEEEECCEEEEEeecCCCc--eeeEEEee
Q 004533 407 SHGHILHAFVNGEYTGSAHGSHDN--VSFTLRNT 438 (746)
Q Consensus 407 ~~~d~~~vfvng~~~G~~~~~~~~--~~~~~~~~ 438 (746)
...|.|.||++++++|++++.... .++.|++.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 457999999999999999976544 45555543
No 92
>PLN00196 alpha-amylase; Provisional
Probab=52.75 E-value=33 Score=39.43 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccc---cCCcCCc-c-----ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNL---HEPQKGQ-Y-----DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~---hep~~g~-~-----df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.+.|.-+|++|+++|-+-=+.-- |-=.+.. | .|....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36678889999999977532211 1111211 2 24455799999999999999999863
No 93
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.50 E-value=26 Score=36.57 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
+++.|++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 5689999999999999985422 12588899999999999874
No 94
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=51.98 E-value=24 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHCCcEEEEec
Q 004533 38 RNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 38 ~~dl~~f~~~a~~~gl~vilrp 59 (746)
..+|.++++.|+++||.|||-.
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 3689999999999999999884
No 95
>PRK01060 endonuclease IV; Provisional
Probab=51.06 E-value=29 Score=36.75 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
+++.|++++++|++.|+..+. +-+.-..+.++- .++.++-+++++.||.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCC
Confidence 467899999999999998653 112211222222 26888999999999984
No 96
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=50.94 E-value=28 Score=38.08 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEEccc---ccccCCcCCcc--------ccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVF---WNLHEPQKGQY--------DFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~---W~~hep~~g~~--------df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.++++.+|..|+|++-+=+= =++.-|....+ .|- |+..||+.|+|.|||+|.|.
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 46788999999999865442 12222222222 244 99999999999999999994
No 97
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.78 E-value=26 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCEEEE-cccccccCCc-------------CCcc-----ccCC-----chhHHHHHHHHHHCCcEEEEec
Q 004533 5 LIAKAKEGGLDVIQT-YVFWNLHEPQ-------------KGQY-----DFSG-----RNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 5 ~l~k~ka~G~n~v~~-yv~W~~hep~-------------~g~~-----df~G-----~~dl~~f~~~a~~~gl~vilrp 59 (746)
.|.-+|++|+|+|.. .|+=...++. +-.| .|.. ..+|.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999987 2321111110 0000 1222 2589999999999999999873
No 98
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=50.18 E-value=24 Score=37.49 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
|++.|+.++++|++.|++-+ +..| ..+...+++ ..++..+.+++++.||.|.
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCce
Confidence 89999999999999999943 2222 223334554 3578899999999999976
No 99
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=49.56 E-value=28 Score=42.53 Aligned_cols=55 Identities=16% Similarity=0.348 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCEEEE-ccc----------------ccccCC----cCCcccc-CCchhHHHHHHHHHHCCcEEEEec
Q 004533 5 LIAKAKEGGLDVIQT-YVF----------------WNLHEP----QKGQYDF-SGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 5 ~l~k~ka~G~n~v~~-yv~----------------W~~hep----~~g~~df-~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
.|.-+|++|+|+|.. .|+ |.+.-- -.+.|-= ....+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999987 343 222110 0011100 135689999999999999999984
No 100
>PLN03059 beta-galactosidase; Provisional
Probab=48.03 E-value=65 Score=40.11 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=47.4
Q ss_pred CcceEEEEEEECCCCC-------CCeEEEeCCCc-eEEEEECCeecccccccccCCCCCCceEEEeeecccccceeeeec
Q 004533 518 RQLTWYKTTFRAPAGN-------DPIALNLQSMG-KGEAWVNGQSIGRYWVSFKTSKGNPSQTQYAVNTVTSIHFCAIIK 589 (746)
Q Consensus 518 ~~~~~yk~~F~~~~~~-------d~~~Ld~~g~g-KG~v~VNG~~iGRYW~~~~~~~ggPqqtl~~~~~~~~~~~~~~~~ 589 (746)
.+..||+++|.++... ++ .|.+.+.+ +-+|||||+-+|.-.-+- .+++-+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~----~~~~~~----------------- 526 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL----SNPKLT----------------- 526 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec----CCcceE-----------------
Confidence 4689999999987532 23 47777775 489999999999765321 134433
Q ss_pred ccccccccCc-ccccccceEEEEEeccC
Q 004533 590 ATNTYHVPRA-FLKPTGNLLVLLEEENG 616 (746)
Q Consensus 590 ~~~~Y~vP~~-~Lk~g~N~lvv~E~~~~ 616 (746)
++.+ -|+.|.|+|-||-+.-|
T Consensus 527 ------~~~~v~l~~g~n~L~iLse~vG 548 (840)
T PLN03059 527 ------FSQNVKLTVGINKISLLSVAVG 548 (840)
T ss_pred ------EecccccCCCceEEEEEEEeCC
Confidence 3433 36678999988765543
No 101
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=46.85 E-value=32 Score=36.78 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEccccc---ccCCcCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWN---LHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~---~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
++.+++||++|++.|...+- . .+....+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 57899999999999988765 2 111112233444 6677789999999886543
No 102
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.88 E-value=38 Score=37.18 Aligned_cols=62 Identities=13% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCC--ccccCCch--hHHHHHHHHHHCCcEEEEecCccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKG--QYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIES 65 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g--~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcA 65 (746)
++.++++++.||-.=.+.+-|.+.. ..+ .|+|+-.+ |..+||+.+++.|++|++-.=|+|+.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~ 92 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP 92 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC
Confidence 4678899999987766666555443 344 77776544 89999999999999999988888864
No 103
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=45.84 E-value=34 Score=36.42 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCcc--ccCCc--hhHHHHHHHHHHCCcEEEEecCccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQY--DFSGR--NDIIRFIKEIQSQGLYVCLRIGPFI 63 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~--df~G~--~dl~~f~~~a~~~gl~vilrpGPYI 63 (746)
++.++++++.||-.=.+.+-+.++.. .+.| +|+-. -|..++++.+++.|++|++-.=|+|
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 56788999999987777766555543 4666 55432 3899999999999999999999999
No 104
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=45.07 E-value=32 Score=39.22 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEE-ccc---ccccCCcCCcc-----ccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 4 SLIAKAKEGGLDVIQT-YVF---WNLHEPQKGQY-----DFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~-yv~---W~~hep~~g~~-----df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
+.|.-+|.+|+++|=+ .++ -..|.=..-.| .|.+..|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 6788899999999943 222 11221100000 6888899999999999999999976
No 105
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=44.16 E-value=13 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=19.0
Q ss_pred cCCcCCccccCCchhHHHHHHHHHHCCcE
Q 004533 26 HEPQKGQYDFSGRNDIIRFIKEIQSQGLY 54 (746)
Q Consensus 26 hep~~g~~df~G~~dl~~f~~~a~~~gl~ 54 (746)
.||.|..|||. +|.+|+++|.|.-+|
T Consensus 34 L~PgPS~~DF~---qLr~flk~alkTpvw 59 (92)
T PF02228_consen 34 LQPGPSSFDFH---QLRNFLKLALKTPVW 59 (92)
T ss_dssp SS---STTTHH---HHHHHHHHHHT-TTS
T ss_pred cCCCCCcccHH---HHHHHHHHHHcCCee
Confidence 58999999999 999999999875443
No 106
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=44.12 E-value=23 Score=35.34 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=31.0
Q ss_pred EEEeCCCceEEEEECCeecccccccccCCCCCCceEEEeeecccccceeeeecccccccccCcccccccceEEEEE
Q 004533 537 ALNLQSMGKGEAWVNGQSIGRYWVSFKTSKGNPSQTQYAVNTVTSIHFCAIIKATNTYHVPRAFLKPTGNLLVLLE 612 (746)
Q Consensus 537 ~Ld~~g~gKG~v~VNG~~iGRYW~~~~~~~ggPqqtl~~~~~~~~~~~~~~~~~~~~Y~vP~~~Lk~g~N~lvv~E 612 (746)
.|.+++.|+=.+||||+.+|+-- + .|..|-|. -..|| ++| ==.++|++|+|.|.|.=
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~--l-----~P~~t~y~-----~~~~Y------~ty-DVt~~L~~G~N~iav~l 63 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP--L-----APGWTDYD-----KRVYY------QTY-DVTPYLRPGENVIAVWL 63 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE---------------BT-----TEEEE------EEE-E-TTT--TTEEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCc--c-----ccccccCC-----CceEE------EEE-eChHHhCCCCCEEEEEE
Confidence 46777888889999999999743 3 44433200 00011 123 23678999999998853
No 107
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.05 E-value=42 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-----cCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-----QKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-----~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||-.=.+.+-+.++.. .-|.|+|+-.+ |..++++..++.|++|++-.=|+|+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~ 97 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKN 97 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCC
Confidence 57888999999876666554333432 23567765433 899999999999999999999999864
No 108
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=42.72 E-value=68 Score=38.84 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHcCCCEEEEc-cc-----ccc--cCCcCCccc---------cCCchhHHHHHHHHHHCCcEEEEe--cC------
Q 004533 6 IAKAKEGGLDVIQTY-VF-----WNL--HEPQKGQYD---------FSGRNDIIRFIKEIQSQGLYVCLR--IG------ 60 (746)
Q Consensus 6 l~k~ka~G~n~v~~y-v~-----W~~--hep~~g~~d---------f~G~~dl~~f~~~a~~~gl~vilr--pG------ 60 (746)
.+.++.+|+++|-+- ++ |.. .--..|-|| |....|++++++.|++.||.||+- |.
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 356789999999763 22 442 223356665 334579999999999999999964 22
Q ss_pred cccccccCCCCCCceeee
Q 004533 61 PFIESEWTYGGLPIWLHD 78 (746)
Q Consensus 61 PYIcAE~~~Gg~P~Wl~~ 78 (746)
||.-||...+-+|.|++-
T Consensus 160 dF~lAr~~~~~Y~g~Y~m 177 (688)
T TIGR02455 160 DFRLAELAHGDYPGLYHM 177 (688)
T ss_pred chHHHhhcCCCCCCceee
Confidence 588888888888888854
No 109
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=42.57 E-value=54 Score=37.39 Aligned_cols=65 Identities=18% Similarity=0.417 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccccccC
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIESEWT 68 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcAE~~ 68 (746)
++.++.+|+.|+-.=.+.+-..+.. ..+.|.|+..+ |...+++.+++.|+++++-.-|+|+-+-.
T Consensus 46 ~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 46 REVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp HHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred HHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 5788999999997777666544333 55566665432 89999999999999999999998876554
No 110
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=41.69 E-value=46 Score=43.52 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=51.2
Q ss_pred hHHHHHHHHHcCCCEEEE-ccc-ccc---cCCcCCccc----c----CCchhHHHHHHHHHHC-CcEEEEecCccccccc
Q 004533 2 WPSLIAKAKEGGLDVIQT-YVF-WNL---HEPQKGQYD----F----SGRNDIIRFIKEIQSQ-GLYVCLRIGPFIESEW 67 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~-yv~-W~~---hep~~g~~d----f----~G~~dl~~f~~~a~~~-gl~vilrpGPYIcAE~ 67 (746)
|+++|..+|++|+|+|-. .++ =.- .--....+. | .|..|+.++++.|++. ||.+|+-.= |
T Consensus 134 w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV------~ 207 (1464)
T TIGR01531 134 WEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV------F 207 (1464)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee------e
Confidence 999999999999999975 333 110 000111111 3 3668999999999985 999998721 1
Q ss_pred C-CCCCCceeeecCCeeeecCCCCce
Q 004533 68 T-YGGLPIWLHDVAGIVFRSDNKPYK 92 (746)
Q Consensus 68 ~-~Gg~P~Wl~~~p~~~~Rt~~~~y~ 92 (746)
+ ++--=.||..+|+.-.-..+.+||
T Consensus 208 NHTa~ds~Wl~eHPEa~Yn~~~sP~L 233 (1464)
T TIGR01531 208 NHTANNSPWLLEHPEAAYNCITSPHL 233 (1464)
T ss_pred cccccCCHHHHhChHhhcCCCCCchh
Confidence 1 111124666666643444444444
No 111
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.52 E-value=57 Score=34.66 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
++-|+..|..||++|++ ..|..++. ..+..++|+.+++.||.|+--.|
T Consensus 74 ~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 74 DEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 34567999999999987 45666665 45788999999999999997766
No 112
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.38 E-value=46 Score=36.83 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||..=.+.+-+.+. ...+.|+|+-.+ |..+|++..++.|++|++-.=|+|+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 27 KEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 467889999999766666554322 355677776443 899999999999999999999999853
No 113
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=40.70 E-value=52 Score=37.32 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEc----ccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 3 PSLIAKAKEGGLDVIQTY----VFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~y----v~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
.+++++++++|+..|+.. ++|..-..+. ..+++++-+++++.||.|..
T Consensus 35 ~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 35 VEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEE
Confidence 588999999999999964 2221111100 23578899999999999764
No 114
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.34 E-value=60 Score=37.27 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEEcc-------------cccccCCcCCcccc-CCchhHHHHHHHHHHCCcEEEEecCccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYV-------------FWNLHEPQKGQYDF-SGRNDIIRFIKEIQSQGLYVCLRIGPFIES 65 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv-------------~W~~hep~~g~~df-~G~~dl~~f~~~a~~~gl~vilrpGPYIcA 65 (746)
.+.|.+++++|+|||-.=| +|..-. ||.+.= .|..-|...|++|++.||.|+...=||..|
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a 141 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMA 141 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccC
Confidence 3678899999999996544 244443 454322 244468888899999999999887666654
No 115
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=40.30 E-value=44 Score=35.65 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
++-|+.+|++||++|++- .|..+.+ ..+..++|+.|++.|+.|+--.|
T Consensus 87 ~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 466889999999999873 4555554 34788999999999999998877
No 116
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.69 E-value=63 Score=35.44 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC---cCCccccCCc--hhHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP---QKGQYDFSGR--NDIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep---~~g~~df~G~--~dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||-+=.+.+-+.+..- ....|+|+-. -|..++++..++.|++|++-.=|+|+.+
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 35678999999977666654333322 2335666533 3899999999999999999999999864
No 117
>PRK09989 hypothetical protein; Provisional
Probab=39.68 E-value=52 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=33.3
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
.+++|++++++|++.|++-.+|. .+.++..++++++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 36899999999999999854332 2367788888999999885
No 118
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=39.49 E-value=64 Score=36.69 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
|+++|+.+|++||+....-+- ....+.. .-|...++.|++.|++++|.+-
T Consensus 19 w~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 19 WEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEec
Confidence 899999999999999888764 1222222 3688888999999999999964
No 119
>PLN02389 biotin synthase
Probab=37.22 E-value=48 Score=37.54 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCEEEEccc--ccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF--WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~--W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 57899999999999877321 21111111122454 67788899999998764
No 120
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=37.05 E-value=60 Score=36.07 Aligned_cols=63 Identities=10% Similarity=0.280 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hH--HHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DI--IRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl--~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++++.||..=.+.+-+.++. ..+.|+|+..+ |. .++++.+++.|++|++-.=|+|+.+
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~ 93 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISAN 93 (339)
T ss_pred HHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccC
Confidence 4678899999997766666554443 34778777543 77 9999999999999999998999864
No 121
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.81 E-value=9 Score=45.67 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=62.5
Q ss_pred cccccccccCCCCccccccccCCCcccccccCCCCceeeecCCCCeEEEEeeeccCCCCCCCCCCCcCccccCChhHHHH
Q 004533 630 KVCGHVTNSHLPPLSSWLRHRQRGDTDIKKFGKKPTVQPSCPLGKKISKIVFASFGNPDGDCERYAVGSCHSSHSQGVVE 709 (746)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LsCp~G~~Is~I~~A~YGr~~~~C~~~~~~~C~~~~sl~iV~ 709 (746)
..|.+.-++|..++ .+.-=.|.++.++.+|..|.||...+.|+.+-...|.++++...+.
T Consensus 312 gl~~~pk~ghlk~~--------------------hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~ 371 (649)
T KOG0496|consen 312 GLLRQPKYGHLKPL--------------------HTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFN 371 (649)
T ss_pred hhhcCCCccccccc--------------------hhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccC
Confidence 56888888884211 1222345678888889999999998899998888999999999999
Q ss_pred HHcCCCCccEEeecCCCcc
Q 004533 710 RACIGKSRCSIPLLSRYFG 728 (746)
Q Consensus 710 ~~C~Gk~~C~i~a~~~~Fg 728 (746)
+.|-.+..|+|......+.
T Consensus 372 ~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 372 KPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred CCccccCceeEEechhhcc
Confidence 9999999999998765443
No 122
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=36.21 E-value=70 Score=40.28 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHCCcEEEEec
Q 004533 39 NDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 39 ~dl~~f~~~a~~~gl~vilrp 59 (746)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 589999999999999999863
No 123
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.81 E-value=14 Score=37.34 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=25.2
Q ss_pred CccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 31 GQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 31 g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
.-|||-...+|.+|+++|+++||.+-|.
T Consensus 159 slFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 159 SLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred hHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3589988899999999999999998876
No 124
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.50 E-value=67 Score=35.29 Aligned_cols=62 Identities=8% Similarity=0.174 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hHHHHHHHHHHCCcEEEEecCccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIES 65 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcA 65 (746)
++.++++++.+|-.=.+.+-+.+.. ..+.|+|+-.+ |..+|++.+++.|++|++-.=|+|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 5788999999997666555433333 34677776443 89999999999999999998899874
No 125
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.46 E-value=67 Score=33.71 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
++++|++++++|++.|++.. | + ..+++++.+++++.||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 46899999999999999831 1 1 13799999999999999864
No 126
>PLN02784 alpha-amylase
Probab=35.21 E-value=63 Score=40.35 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC---cCCc-c----ccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP---QKGQ-Y----DFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep---~~g~-~----df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
.++|..++++|+++|-+-=+.....+ .+.. | .|....+|..+++.|+++||.||+-
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlD 587 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGD 587 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 35677889999999987543221111 1111 1 2445679999999999999999986
No 127
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.14 E-value=74 Score=34.47 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC--------cCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP--------QKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIE 64 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep--------~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIc 64 (746)
++.++++|+.||-+=.+++-..+|.- .-+.|+|+-.+ |..++++.+++.|++|++-.=|+|.
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~ 99 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADG 99 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 46789999999976666654333321 23567776433 8999999999999999998877653
No 128
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.65 E-value=64 Score=34.16 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCcee
Confidence 789999999999999999542 1111 01112333 2468899999999999875
No 129
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.16 E-value=31 Score=34.02 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 6 IAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 6 l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
|+.++++|+..|+....+....... ...++++.++++++||.++.-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEE
Confidence 6789999999999987643333222 347999999999999996643
No 130
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.90 E-value=89 Score=32.88 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCL 57 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vil 57 (746)
|++.|+.++++|++.|++..-. .|+-.+ ++. ..+++++-+++++.||.|..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999983210 011001 121 24788899999999999763
No 131
>PRK07094 biotin synthase; Provisional
Probab=32.75 E-value=45 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEccc---ccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF---WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~---W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.+++||++|++.|.+.+- -..++.-.....++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 47899999999999987653 22222222234555 7888899999999864
No 132
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=32.69 E-value=1e+02 Score=32.70 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=37.7
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHC-CcEEEEe
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQ-GLYVCLR 58 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~-gl~vilr 58 (746)
|++.|+.+|++|++.|++-+....... .......+++++.++++++ ++.+.+-
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 788999999999999998765321111 1112456899999999999 6665543
No 133
>PRK12677 xylose isomerase; Provisional
Probab=32.56 E-value=98 Score=35.14 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccC---CchhHHHHHHHHHHCCcEEE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFS---GRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~---G~~dl~~f~~~a~~~gl~vi 56 (746)
+++++++++++|+..|+.- .+..--|+.+ -...+.++.+++++.||.|.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred HHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 5789999999999999883 1111111111 11358899999999999977
No 134
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=32.35 E-value=75 Score=38.92 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCEEEE-cccccccCCcC--------------------CccccCC-----chhHHHHHHHHHHCCcEEEEe
Q 004533 5 LIAKAKEGGLDVIQT-YVFWNLHEPQK--------------------GQYDFSG-----RNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 5 ~l~k~ka~G~n~v~~-yv~W~~hep~~--------------------g~~df~G-----~~dl~~f~~~a~~~gl~vilr 58 (746)
.|.-+|.+|+++|+. .|+.-..+++. |.|--.+ .+.|..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 377899999999997 67755555543 2332223 357888999999999999987
No 135
>PLN02877 alpha-amylase/limit dextrinase
Probab=32.18 E-value=93 Score=39.48 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHCCcEEEEec
Q 004533 39 NDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 39 ~dl~~f~~~a~~~gl~vilrp 59 (746)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 479999999999999999873
No 136
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=30.77 E-value=51 Score=36.98 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=37.0
Q ss_pred CCcCCccccC----------CchhHHHHH--HHHHHCCcEEEEecCcccccccCCCC
Q 004533 27 EPQKGQYDFS----------GRNDIIRFI--KEIQSQGLYVCLRIGPFIESEWTYGG 71 (746)
Q Consensus 27 ep~~g~~df~----------G~~dl~~f~--~~a~~~gl~vilrpGPYIcAE~~~Gg 71 (746)
|-.||+|.|. .+++..+++ +.|++.|+-+-+-|=| +.+.|+..|
T Consensus 203 EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 203 EVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred cccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 4779999986 457888887 8999999999999987 999998744
No 137
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=30.44 E-value=44 Score=37.21 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEE-----EcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 3 PSLIAKAKEGGLDVIQ-----TYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~-----~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
++.|+++|++|++.+. ++..--++.-.++....+ +..+.++.|+++||.+-
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 5679999999997654 332333333445544444 56678999999998764
No 138
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=30.07 E-value=46 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccc------CCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLH------EPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~h------ep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
++.|++||++|++.+.. .-.... .-.|+...++ +..+.++.|+++||.+.
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 57899999999998740 001111 1123433443 56788999999999653
No 139
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.50 E-value=92 Score=34.43 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||-.=.+.+-+.+.. .-+.|+|+-.+ |..++++.+++.|+++++-.=|+|+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 5778899999996655555444333 34557665433 789999999999999999999999864
No 140
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.36 E-value=51 Score=36.90 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEEccc---ccccCCcCCccccCCchhHHHHHHHHHHCCcE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF---WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLY 54 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~---W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~ 54 (746)
++.|+.||++|+|.|++.|- -..++--....+++ ++.+.++.++++|+.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 47899999999999999985 33443333445555 888999999999975
No 141
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=26.42 E-value=3.2e+02 Score=25.41 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=39.5
Q ss_pred eEEEEEEeecCCCCCCCceEecCcceEEEEEECCEEEEEeecCCC-----ceeeEEEeeeeccCC-CceEEEEEecCC
Q 004533 385 YFWYTFRFHYNSSNAQAPLDVQSHGHILHAFVNGEYTGSAHGSHD-----NVSFTLRNTVHLRQG-TNDGALLSVTVG 456 (746)
Q Consensus 385 y~~Y~t~~~~~~~~~~~~L~v~~~~d~~~vfvng~~~G~~~~~~~-----~~~~~~~~~~~l~~g-~~~l~iLven~G 456 (746)
.+.+++.|..+.+. .-.+.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|+..+.+
T Consensus 47 ~~~~~G~~~~~~~G-~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 47 SVRWTGYFKPPETG-TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEEEEEEEESSSE-EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEEEEEEEecccCc-eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 44577777665321 2222233 6789999999999987765432 001112234456665 677877655444
No 142
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=26.17 E-value=1.5e+02 Score=32.54 Aligned_cols=64 Identities=20% Similarity=0.496 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEEccc-ccc-cCCcCC-----ccccCCc--hhHHHHHHHHHHCCcEEEEecCcccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVF-WNL-HEPQKG-----QYDFSGR--NDIIRFIKEIQSQGLYVCLRIGPFIESE 66 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~-W~~-hep~~g-----~~df~G~--~dl~~f~~~a~~~gl~vilrpGPYIcAE 66 (746)
++.++++|+.||-.=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++-.=|+|+.+
T Consensus 26 ~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~ 98 (317)
T cd06594 26 LEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADD 98 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 47789999999977666664 632 222223 2444433 2899999999999999999999999864
No 143
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.04 E-value=80 Score=25.16 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 4 SLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
+.+.-+.+.|+|.++++. +.........+.|.-+ +.++.++..+++|..|
T Consensus 15 ~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 15 EILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 566778999999999986 3322234455555422 3889999999999765
No 144
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.01 E-value=1.3e+02 Score=32.86 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEEccc----cccc-CC--cCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLDVIQTYVF----WNLH-EP--QKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~----W~~h-ep--~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
++.|..|...|+|.+..|+- +.-+ +- .+|.|.= .|+.++++.|++.||.||--
T Consensus 20 k~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEec
Confidence 46788999999999999873 2211 11 1344444 49999999999999999965
No 145
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=25.75 E-value=90 Score=34.27 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCC-EEEEccc----cccc-CCcCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLD-VIQTYVF----WNLH-EPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n-~v~~yv~----W~~h-ep~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
++.|+.||++|++ .|++.+- ..+. --.+|. +++ ++.+.+++++++|+.|.+-
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~-t~~---~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS-TFE---DFIRAAELARKYGAGVKAY 174 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC-CHH---HHHHHHHHHHHcCCcEEEE
Confidence 5789999999999 5888764 4442 234443 555 8889999999999986644
No 146
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.30 E-value=52 Score=34.22 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=17.2
Q ss_pred ceeeecCCCCeEEEEeeeccCCCC
Q 004533 665 TVQPSCPLGKKISKIVFASFGNPD 688 (746)
Q Consensus 665 ~~~LsCp~G~~Is~I~~A~YGr~~ 688 (746)
+.+||-++-|.+ .|-.|.-.+|.
T Consensus 135 P~~LSGGEQQRv-aIARAiV~~P~ 157 (223)
T COG2884 135 PSQLSGGEQQRV-AIARAIVNQPA 157 (223)
T ss_pred ccccCchHHHHH-HHHHHHccCCC
Confidence 567887777788 48888888875
No 147
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.30 E-value=76 Score=35.72 Aligned_cols=49 Identities=18% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEccc----ccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF----WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~----W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.|+.||++|+|.|++.|- -.+. --.+..+++ +..+.++.|+++|+..
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~-~l~r~~~~~---~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLK-RLGRIHGPD---EAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHH-HhCCCCCHH---HHHHHHHHHHHcCCCe
Confidence 47899999999999999985 1111 111223444 7888899999999853
No 148
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.22 E-value=1e+02 Score=32.33 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcC----CccccCCchhHHHHHHHHHHCCcEEEEec-Ccc
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQK----GQYDFSGRNDIIRFIKEIQSQGLYVCLRI-GPF 62 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~----g~~df~G~~dl~~f~~~a~~~gl~vilrp-GPY 62 (746)
+++.++.++++|..+|.+ |..+.... -.+... ...|.++.+.|++.|+.+.+-| +|+
T Consensus 92 ~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 456788899999999855 32232211 111111 1368888999999999999987 454
No 149
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=24.08 E-value=59 Score=35.84 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEc-----ccccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTY-----VFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~y-----v~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.+++||++|++.+.-. -.--.+.-.|....++ +..+.++.|+++||.+
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~---~~l~~i~~a~~~Gi~v 197 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSE---EWLEVMETAHKLGLPT 197 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 678999999999877411 0011111123344454 6688899999999864
No 150
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.02 E-value=63 Score=34.39 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcC--CccccCCchhHHHHHHHHHHCCcE
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQK--GQYDFSGRNDIIRFIKEIQSQGLY 54 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~--g~~df~G~~dl~~f~~~a~~~gl~ 54 (746)
|+++|.-+|++||+.|++-|- |..+ -.-||+ .........++.+.|+.
T Consensus 20 W~erl~~AK~~GFDFvEmSvD----EsDeRLaRLDWs-~~er~~l~~ai~etgv~ 69 (287)
T COG3623 20 WLERLALAKELGFDFVEMSVD----ESDERLARLDWS-KEERLALVNAIQETGVR 69 (287)
T ss_pred HHHHHHHHHHcCCCeEEEecc----chHHHHHhcCCC-HHHHHHHHHHHHHhCCC
Confidence 999999999999999998763 3322 234444 11234455666666654
No 151
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.82 E-value=88 Score=30.73 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEcccc-cccCCc--CCccccCCchhHHHHHHHHHHCCcEEEEecCcccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFW-NLHEPQ--KGQYDFSGRNDIIRFIKEIQSQGLYVCLRIGPFIE 64 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W-~~hep~--~g~~df~G~~dl~~f~~~a~~~gl~vilrpGPYIc 64 (746)
++.++.++++|...|.+...+ ..+... +..++.- ...|.+..+.|++.|+.+.+.|-|+..
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~~~ 137 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSSSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccCcc
Confidence 567888999999998887653 112111 1111111 136778888999999999999876543
No 152
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.96 E-value=2.6e+02 Score=22.85 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=30.8
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
.++.++++|+.|++.|.+=-+= ++. ...+|.+++++.||.||..
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~----------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG----------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC----------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 3677889999999988764320 222 3567888888889887643
No 153
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.95 E-value=91 Score=33.19 Aligned_cols=44 Identities=23% Similarity=0.518 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCEEEEcccccccCCcCCccccCCchhHHHHHHHHHHCCcEEE-EecCccccc
Q 004533 4 SLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC-LRIGPFIES 65 (746)
Q Consensus 4 d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi-lrpGPYIcA 65 (746)
+.++++|++|+ -||..| +|.+ +-++.|++.|-..| |-.|||..|
T Consensus 117 ~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 117 PAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 44566677776 455554 3332 23567777777766 777777765
No 154
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.90 E-value=87 Score=35.92 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEEccc----ccccCCcCCccccCCchhHHHHHHHHHHCCcEEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF----WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYVC 56 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~----W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~vi 56 (746)
++.|+.||++|+|.|++.|- -.++.-.++ .+++ ++.+.++.++++|+.+|
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~-~~~~---~~~~ai~~l~~~g~~~i 194 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRP-QKRA---DVHQALEWIRAAGFPIL 194 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCC-CCHH---HHHHHHHHHHHcCCCeE
Confidence 47899999999999999985 222222333 2444 88899999999998653
No 155
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=22.58 E-value=1.5e+02 Score=32.89 Aligned_cols=61 Identities=11% Similarity=0.251 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCccccCCch--hHHHHHHHHHHCCcEEEEecCcccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIE 64 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIc 64 (746)
++.++++++.+|-.=.+++-|.++. .-+.|.|+..+ |..++++..++.|+++++-.=|+|.
T Consensus 27 ~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 27 EEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred HHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 5678899999997666666666554 45778776543 7899999999999999999889887
No 156
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.27 E-value=1.7e+02 Score=31.91 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEccc----ccccCC----------------cCCccccCCchhHHHHHHHHHHCCcEEEEe
Q 004533 3 PSLIAKAKEGGLDVIQTYVF----WNLHEP----------------QKGQYDFSGRNDIIRFIKEIQSQGLYVCLR 58 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~----W~~hep----------------~~g~~df~G~~dl~~f~~~a~~~gl~vilr 58 (746)
++.|..|-..++|.+..++- |.+--+ ..|.|.-+ |+.++++.|++.||.||.-
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPE 91 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEe
Confidence 56788999999999999987 755422 12344444 9999999999999999965
No 157
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=21.19 E-value=2.3e+02 Score=28.84 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=50.0
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccC--C--------------------cCCccccCCc---------------hhHHHH
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHE--P--------------------QKGQYDFSGR---------------NDIIRF 44 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~he--p--------------------~~g~~df~G~---------------~dl~~f 44 (746)
+...++.+|++|+ .+-.|.|-.... + -|-.+|+|.. .++.+|
T Consensus 41 ~~~n~~~A~~aGl-~~G~Yhf~~~~~~~a~~qA~~fi~~~~~~~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~f 119 (199)
T cd06412 41 FSSQYNGAYNAGL-IRGAYHFALPDQSSGAAQADYFLDHGGGWSPDGRTLPGVLDLEYNPYGATCYGLSPAQMVSWIKDF 119 (199)
T ss_pred HHHHHHHHHHcCC-ceEEEEEeecCCCCHHHHHHHHHHHcccccCCCCCCCeEEEEecCCCCCccCCCCHHHHHHHHHHH
Confidence 5677889999998 667777642221 0 0113455541 356888
Q ss_pred HHHHHHC-CcEEEEecCccc-----ccccCCCCCCceeeecCC
Q 004533 45 IKEIQSQ-GLYVCLRIGPFI-----ESEWTYGGLPIWLHDVAG 81 (746)
Q Consensus 45 ~~~a~~~-gl~vilrpGPYI-----cAE~~~Gg~P~Wl~~~p~ 81 (746)
++..+++ |.+++|=.+++- ...-.....|.|+.+++.
T Consensus 120 ~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 162 (199)
T cd06412 120 SDTYKARTGRDPVIYTTTSWWNQCTGNSAGFANHPLWLARYGS 162 (199)
T ss_pred HHHHHHHHCCCcEEEecHHHHHHhccCcchhcCCCeEEEecCC
Confidence 8888774 888888777742 111234578899988654
No 158
>PRK15108 biotin synthase; Provisional
Probab=20.86 E-value=1.4e+02 Score=33.19 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCEEEEccc------ccccCCcCCccccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVF------WNLHEPQKGQYDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~------W~~hep~~g~~df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.++++|++|++.+...+- =.+|- .-+|+ +.-+.++.|++.|+.+
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~----~~~~~---~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIIT----TRTYQ---ERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCC----CCCHH---HHHHHHHHHHHcCCce
Confidence 56789999999997766542 22221 11333 6777788888889855
No 159
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=20.77 E-value=1.6e+02 Score=34.03 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccC---C--cCCcccc-----CC-----chhHHHHHHHHH-HCCcEEEEe
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHE---P--QKGQYDF-----SG-----RNDIIRFIKEIQ-SQGLYVCLR 58 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~he---p--~~g~~df-----~G-----~~dl~~f~~~a~-~~gl~vilr 58 (746)
|+++|+.++++|+|+|..-=.=..-+ | ...+..| +. ..++.+|+..++ +.||.++.-
T Consensus 24 W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 24 WEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred HHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 99999999999999996521100000 0 0011111 11 149999998885 789988755
No 160
>PRK08508 biotin synthase; Provisional
Probab=20.76 E-value=1.6e+02 Score=31.79 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCc-------cccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQ-------YDFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~-------~df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.|++||++|++.+... .|..+.- .+|+ +..+.++.|++.||.|
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~~~~~~~i~~~~~~~---~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETSKEFFPKICTTHTWE---ERFQTCENAKEAGLGL 153 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccchHHHhcCCCCCCCHH---HHHHHHHHHHHcCCee
Confidence 678999999999988763 2222211 2233 5566888899999744
No 161
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.68 E-value=2.1e+02 Score=31.03 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC--cCCccccCCchhHHHHHHHHHHCCcEEEEec
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP--QKGQYDFSGRNDIIRFIKEIQSQGLYVCLRI 59 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep--~~g~~df~G~~dl~~f~~~a~~~gl~vilrp 59 (746)
++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+.+++|++.|+.|.+-.
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 56788899999999999985432111 11211122 2378899999999999988773
No 162
>PRK06256 biotin synthase; Validated
Probab=20.52 E-value=1.1e+02 Score=33.69 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCCcCCcc-------ccCCchhHHHHHHHHHHCCcEE
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEPQKGQY-------DFSGRNDIIRFIKEIQSQGLYV 55 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep~~g~~-------df~G~~dl~~f~~~a~~~gl~v 55 (746)
++.+++||++|++.|...+ |..+-.| +++ +..+.++.|+++||.|
T Consensus 152 ~e~l~~LkeaG~~~v~~~l-----Ets~~~~~~i~~~~t~~---~~i~~i~~a~~~Gi~v 203 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL-----ETSRSYFPNVVTTHTYE---DRIDTCEMVKAAGIEP 203 (336)
T ss_pred HHHHHHHHHhCCCEEecCC-----ccCHHHHhhcCCCCCHH---HHHHHHHHHHHcCCee
Confidence 4789999999999887643 2122222 333 6778889999999865
No 163
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.50 E-value=1.7e+02 Score=35.65 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCEEEEcccccccCC-cCCccccCCch--hHHHHHHHHHHCCcEEEEecCccccc
Q 004533 3 PSLIAKAKEGGLDVIQTYVFWNLHEP-QKGQYDFSGRN--DIIRFIKEIQSQGLYVCLRIGPFIES 65 (746)
Q Consensus 3 ~d~l~k~ka~G~n~v~~yv~W~~hep-~~g~~df~G~~--dl~~f~~~a~~~gl~vilrpGPYIcA 65 (746)
++.++++|+.||-.=.+.+-+.++.. .-+.|.|+-.+ |...+++..++.|++|++..=|||..
T Consensus 286 ~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 286 NSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 35678899999865444433332333 23567665333 78999999999999999999999964
No 164
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.05 E-value=1.5e+02 Score=31.24 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCEEEEcccccccCCcC-CccccCCchhHHHHHHHHHHCCcEEEEecC
Q 004533 2 WPSLIAKAKEGGLDVIQTYVFWNLHEPQK-GQYDFSGRNDIIRFIKEIQSQGLYVCLRIG 60 (746)
Q Consensus 2 W~d~l~k~ka~G~n~v~~yv~W~~hep~~-g~~df~G~~dl~~f~~~a~~~gl~vilrpG 60 (746)
+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+-+-
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 46778889999999997521100001111 01110 013577888899999999999864
Done!