BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004536
(746 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 381 DQSATRFFVIQGSESLASWQANLLFEPVQFEGLE-VVVHRGIYEAAKGIYEQMLPEVHAH 439
D T + V +GS S+ +W A+L F PV + + VH+G ++ + +++ V
Sbjct: 70 DSEKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQ 129
Query: 440 LKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVPASSLLPVITFGAPSIMCGGD-- 495
K ++ +++ TGHSLGG+ +L L L R E +SS L + T G P + GD
Sbjct: 130 FK---QYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRV---GDPA 183
Query: 496 --HLLRKLGLPRSHVQSITLHRDIVP 519
+ + G+P + RDIVP
Sbjct: 184 FANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 381 DQSATRFFVIQGSESLASWQANLLFEPVQFEGLE-VVVHRGIYEAAKGIYEQMLPEVHAH 439
D T + V +GS S+ +W A+L F PV + + VH+G ++ + +++ V
Sbjct: 70 DSEKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQ 129
Query: 440 LKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVPASSLLPVITFGAPSIMCGGD-- 495
K ++ +++ TGHSLGG+ ++L L L R E +SS L + T G P + G+
Sbjct: 130 FK---QYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRV---GNPA 183
Query: 496 --HLLRKLGLPRSHVQSITLHRDIVP 519
+ + G+P + RDIVP
Sbjct: 184 FANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 363 DDLK-----STRLSPCEWFICDDDQSATRFFVIQGSESLASWQANLLFEPVQFEGLE-VV 416
+DLK ST + + D T + V +GS S+ +W A+L F PV + +
Sbjct: 47 EDLKIIKTWSTLIYDTNAMVARGDSEKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTK 106
Query: 417 VHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEV 474
VH+G ++ + +++ V K ++ +++ TGHSLGG+ ++L L L R E
Sbjct: 107 VHKGFLDSYGEVQNELVATVLDQFK---QYPSYKVAVTGHSLGGATALLCALDLYQREEG 163
Query: 475 PASSLLPVITFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 519
+SS L + T G P + G+ + + G+P + RDIVP
Sbjct: 164 LSSSNLFLYTQGQPRV---GNPAFANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 381 DQSATRFFVIQGSESLASWQANLLFEPVQFEGLE-VVVHRGIYEAAKGIYEQMLPEVHAH 439
D T + V +GS S+ +W A+L F PV + + VH+G ++ + +++ V
Sbjct: 70 DSEKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQ 129
Query: 440 LKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVPASSLLPVITFGAPSIMCGGD-- 495
K ++ +++ TGHSLGG+ ++L L L R E +SS L + T G P + G+
Sbjct: 130 FK---QYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRV---GNPA 183
Query: 496 --HLLRKLGLPRSHVQSITLHRDIVP 519
+ + G+P + RDIVP
Sbjct: 184 FANYVVSTGIPYRRTVN---ERDIVP 206
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 367 STRLSPCEWFICDDDQSATRFFVIQGSESLASWQANLLFEPVQFEGLE-VVVHRGIYEAA 425
++ LS ++ D+ T + V +G+ S S +++F ++ ++ VH G +
Sbjct: 57 TSLLSDTNGYVLRSDKQKTIYLVFRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSY 116
Query: 426 KGIYEQMLPEVHAHLKACGKHATFRF--TGHSLGGSLSVLINLMLLIRGEVPASSLLPVI 483
+ + P V L A H T++ TGHSLGG+ ++L + L R + L +
Sbjct: 117 EQVVNDYFPVVQEQLTA---HPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIF 173
Query: 484 TFGAPSIMCGGD----HLLRKLGLPRSHVQSITLHRDIVP 519
T G P + G+ + + G+P Q RDIVP
Sbjct: 174 TVGGPRV---GNPTFAYYVESTGIP---FQRTVHKRDIVP 207
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 376 FICDDDQSATRFFVIQGSESLASWQANLLFEPVQFEGL--EVVVHRGIYEAAKGIYEQML 433
F+ D+ + +GS S+ +W NL F+ + + H G + + + + +
Sbjct: 66 FLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLR 125
Query: 434 PEVHAHLKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVPASSLLPVITFGAPSIM 491
+V ++ +H +R FTGHSLGG+L+ + L RG + V ++GAP +
Sbjct: 126 QKVEDAVR---EHPDYRVVFTGHSLGGALATVAGADL--RGN---GYDIDVFSYGAPRV- 176
Query: 492 CGGDHLLRKLGLPRS--HVQSITLHRDIVPR 520
G+ + ++ + IT DIVPR
Sbjct: 177 --GNRAFAEFLTVQTGGTLYRITHTNDIVPR 205
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 376 FICDDDQSATRFFVIQGSESLASWQANLLFEPVQFEGL--EVVVHRGIYEAAKGIYEQML 433
F+ D+ + +GS S+ +W NL F+ + + H G + + + + +
Sbjct: 66 FLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLR 125
Query: 434 PEVHAHLKACGKHATFR--FTGHSLGGSLSVLINLMLLIRGEVPASSLLPVITFGAPSIM 491
+V ++ +H +R FTGH+LGG+L+ + L RG + V ++GAP +
Sbjct: 126 QKVEDAVR---EHPDYRVVFTGHALGGALATVAGADL--RGN---GYDIDVFSYGAPRV- 176
Query: 492 CGGDHLLRKLGLPRS--HVQSITLHRDIVPR 520
G+ + ++ + IT DIVPR
Sbjct: 177 --GNRAFAEFLTVQTGGTLYRITHTNDIVPR 205
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 414 EVVVHRGIYEAAKGIYEQMLPEVHAHLKACGKHATFRFTGHSLGGSLSVLINLMLLIRGE 473
+ +VH G ++ Y Q+ P++ + ++ + TGHSLGG+ ++L + L + G
Sbjct: 122 DCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQ-IAVTGHSLGGAAALLFGINLKVNGH 180
Query: 474 VPASSLLPVITFGAPSI 490
P V+T G P +
Sbjct: 181 DPL-----VVTLGQPIV 192
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 19/67 (28%)
Query: 377 ICDDDQSATRFFVIQGSESLASWQ----------ANLLFEPVQFEGLEVVVHRGIYEAAK 426
I DD++ A FF + S S A+W AN++ +P +F+ YEA +
Sbjct: 277 ISDDEEIADEFFEVNKSTSRATWSNICRPAXRTXANIVADPAKFKE---------YEAER 327
Query: 427 GIYEQML 433
Y Q++
Sbjct: 328 NCYYQLI 334
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 376 FICDDDQSATRFFVIQGSESLASWQANL---LFEPVQFEGL----EVVVHRGIYEAAKGI 428
F+ + T +++GS ++ + ++ L P + G+ +V + RG++ +
Sbjct: 48 FVGYSTEKKTIAVIMRGSTTITDFVNDIDIALITP-ELSGVTFPSDVKIMRGVHRPWSAV 106
Query: 429 YEQMLPEVHAHLKACGKHATFRFTGHSLGGSLSVLINLML 468
++ ++ EV A L A T GHSLGG+L+ + ++ L
Sbjct: 107 HDTIITEVKA-LIAKYPDYTLEAVGHSLGGALTSIAHVAL 145
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MDTLCLKSGIHGITSPISVGGPLEVRSNSAQQQ 33
+D+L ++ GITS + GPL V++N+ QQQ
Sbjct: 75 LDSLISEAETRGITSYNPLAGPLRVQANNPQQQ 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,722,281
Number of Sequences: 62578
Number of extensions: 732838
Number of successful extensions: 1309
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 12
length of query: 746
length of database: 14,973,337
effective HSP length: 106
effective length of query: 640
effective length of database: 8,340,069
effective search space: 5337644160
effective search space used: 5337644160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)