Query 004537
Match_columns 746
No_of_seqs 323 out of 3574
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:01:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004537.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1844-1848//hhsearch_pdb/004537hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 444.8 11.3 356 8-385 261-641 (1321)
2 4f4c_A Multidrug resistance pr 1.0 1 1 444.7 5.5 355 10-385 923-1304(1321)
3 3g5u_A MCG1178, multidrug resi 1.0 1 1 414.5 16.1 356 8-385 233-613 (1284)
4 3qf4_A ABC transporter, ATP-bi 1.0 1 1 408.4 7.3 353 9-385 189-566 (587)
5 4a82_A Cystic fibrosis transme 1.0 1 1 404.9 10.1 353 9-385 187-564 (578)
6 3qf4_B Uncharacterized ABC tra 1.0 1 1 404.7 11.1 356 9-385 203-578 (598)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 399.3 9.8 356 9-385 191-567 (582)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 398.5 14.6 350 9-385 191-567 (582)
9 2yl4_A ATP-binding cassette SU 1.0 1 1 395.9 10.3 355 9-385 188-570 (595)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 394.5 13.5 355 10-385 878-1258(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=444.76 Aligned_cols=356 Identities=21% Similarity=0.276 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCH
Q ss_conf 47678879999999999730988545424457887310012445543148986777776610422133321100100000
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
.+..++.++..++..+.++|..++.+++|+++.+..+.+++.+........+.+.....+...........-..+...+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998399999821429999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHCCCCC----CHHHHC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 23564200221000000002556----800001------------68999889994000026778998889999871089
Q 004537 88 GAALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (746)
|+.++..+.++.|..+++..+.. |...+. ..+.++..+.++.++...... .........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG---RKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC---CCCCCCCCCEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCEE
T ss_conf 999999599869999999999999999999899999999999999999999971785345666556---56778887679
Q ss_pred EEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999622566644454002127999488099998799862899999997399999974189998870792----10
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
|+||+|+|+ ..+++++|+|+|+++++|+.+||+||||||||||+++|.| +++|. +|+|.+||+++++ .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~~~-~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYDVL-KGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSCCS-EEEEEETTEETTTSCHHHH
T ss_pred EEEEEEECC-----CCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCC-CCCCC-CCCCCCCCCCCHHCCHHHH
T ss_conf 998554079-----9998743333188622882789980589857788887545-65164-4861579965011259998
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 273899903886799999999999987406998776999999-----999999883997422222358556678988989
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 228 ~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrq 302 (746)
|++++||+|++.+|+. |++|||.|+.. ..++++..+ .+++.++.+ +++.||.||+.+. .|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~~l--p~G~~T~vGe~G~-~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMVAACKMANAEKFIKTL--PNGYNTLVGDRGT-QLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHHHS--TTTTSSEESSSSC-CCCHHHHH
T ss_pred HHCCCCCCCCCEEECC-CHHHHHHHHCC-----CCHHHHHHHHHHHCCCHHHHHCC--CCCCCCEECCCCC-CCCHHHHH
T ss_conf 5046665875332078-61678864155-----22099999999875654688708--8888607558988-77777879
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999499999999999999999999997897799995688908885067799970976999529778
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 RvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~ 382 (746)
|++||||++++|+|++||||||+||+.++..+.+.|+++.+ |+|+|+++||++. ...+|+|++|++|++++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--HHHCCEEEEEECCEEECCCCHHH
T ss_conf 99999987259998998455446887899999999999847-9889997363878--98689899963996513689999
Q ss_pred HHH
Q ss_conf 999
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 998
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=444.67 Aligned_cols=355 Identities=22% Similarity=0.296 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHHH
Q ss_conf 67887999999999973098854542445788731001244554314898677777661042213332110010000023
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
...+.++..+.....+.|+....+|+|+++.+....+++.+.+........+.....+...........-+....++.|.
T Consensus 923 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 1002 (1321)
T 4f4c_A 923 KNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGL 1002 (1321)
T ss_dssp CSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888988999999627988861414889999999999999999999999999999999999999999998757
Q ss_pred HHHHHCCCCCCHHHHHC------CCCCCHHHHCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56420022100000000------255680000168------------999889994000026778998889999871089
Q 004537 90 ALSRASSASLGLSFSFT------GFTMPPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (746)
.++..+..+.+....+. ....+...+... +.++..+..++++... .....++....|+
T Consensus 1003 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~~g~I~ 1078 (1321)
T 4f4c_A 1003 ALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS----LAGEKKKLYGKVI 1078 (1321)
T ss_dssp HTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----CCSBCCCCCCCEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCEEE
T ss_conf 887537654214789999999987788999999999999999999998999860766577766----7787888888189
Q ss_pred EEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999622566644454002127999488099998799862899999997399999974189998870792----10
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
|+||+|+|+ .+++.++|+|+|++++|||.+||+||||||||||+++|. |+++|. +|+|.+||.|+++ .+
T Consensus 1079 f~nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~~p~-~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1079 FKNVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYDTL-GGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp EEEEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT-TSSCCS-SSEEEETTEETTTBCHHHH
T ss_pred EEEEEEECC-----CCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCC-CCEEEECCEEHHHCCHHHH
T ss_conf 998798579-----999882124516998898999998999981999999995-686389-9789999998654999999
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 273899903886799999999999987406998776999999-----999999883997422222358556678988989
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 228 ~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrq 302 (746)
|++++||+||+.+|+. |+||||.|+.. |.+.++++..+ .++++++ .|+++.||.||+.+. .|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~~Al~~a~l~~~I~--~Lp~GldT~vge~G~-~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIA--ELPEGFETRVGDRGT-QLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHHHHHHHTTCHHHHH--TSTTTTCSEETTTSC-SSCHHHHH
T ss_pred HHHEEEECCCCEEECC-CHHHHHHCCCC---CCCCCHHHHHHHHHHHCCHHHHH--CCCCCCCCEECCCCC-CCCHHHHH
T ss_conf 8545998789973272-39999745499---99999999999999829849997--176789998238891-56999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999499999999999999999999997897799995688908885067799970976999529778
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 RvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~ 382 (746)
|++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++||+++ ...+|+|++|++|+++++|+|+|
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999971799899968111578999999999999973-99989996068999--99699999998989999888899
Q ss_pred HHH
Q ss_conf 999
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 984
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=414.55 Aligned_cols=356 Identities=23% Similarity=0.306 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCH
Q ss_conf 47678879999999999730988545424457887310012445543148986777776610422133321100100000
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
.+..++.++..++..+.++|+.+..+|+|+|+.+..+.+++.+........+.+.....+..............+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997879999846539999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHCCCC----CCHHHH------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 2356420022100000000255----680000------------168999889994000026778998889999871089
Q 004537 88 GAALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (746)
|+.++..+.++.|.+..+..+. .|...+ +..+.++..+.+++++...... . ..+.....++
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~--~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG-H--KPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC-C--CCTTCCCCEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-C--CCCCCCCEEE
T ss_conf 999999299889999999999999999999999999999999999999999972898677666567-7--7777777189
Q ss_pred EEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999622566644454002127999488099998799862899999997399999974189998870792----10
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++||+|+|.. +++.++|+|+|+++++||.+||+||||||||||+++|.| +++|. +|+|.+||.++.. .+
T Consensus 390 ~~~v~~~y~~-----~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g-~~~~~-~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYPS-----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR-LYDPL-DGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCSS-----TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT-SSCCS-EEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEECCC-----CCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CEEEEECCEEHHHCCHHHH
T ss_conf 9998997699-----998710125458975998899989999979999999807-88999-7389999998775799999
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 27389990388679999999999998740699877699999-----9999999883997422222358556678988989
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 228 ~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrq 302 (746)
+++++||+|++.+|+. ||+||+.++... .+.++.. ...++.++.+ ++..||.+|... ..|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g-~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGERG-AQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSSSS-CSSCHHHHH
T ss_pred HHHEEEECCCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHHHC--CCCCCCCCCCCC-CCCCHHHHH
T ss_conf 8654898688753776-699997457989-----9999999999982969999746--563345014787-865999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999639978999499999999999999999999997897799995688908885067799970976999529778
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 RvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~ 382 (746)
|++|||+|+.+|+||+||||||+||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+|++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--i~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH--HTTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHH
T ss_conf 9999999952999899979877779999999999999973-99989999407789--97499899998999999788999
Q ss_pred HHH
Q ss_conf 999
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 986
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=408.40 Aligned_cols=353 Identities=22% Similarity=0.291 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++.+++..+..+...|.....+++|+++.+..+.+++.+..........+.....+..............+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999855999998621499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCC----CHHHHC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3564200221000000002556----800001------------689998899940000267789988899998710899
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (746)
+.++..+.++.|....|..+.. |...+. ..+..+..+.++..+... .....+.....+++
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD----NALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT----TCBCCSCCCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCEEE
T ss_conf 99998499389999999999999999999999999999999999999999976897657887----76566888880799
Q ss_pred EEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999622566644454002127999488099998799862899999997399999974189998870792----102
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (746)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~ 228 (746)
+||+|+|. ..++++|+|+|+++++||+++|+||||||||||+++|+| +++|. +|+|.+||+++.+ .++
T Consensus 345 ~~v~~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-~~~~~-~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 345 ENVEFRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR-LIDPE-RGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT-SSCCS-EEEEEESSSBGGGBCHHHHH
T ss_pred EEEEEECC------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CCEEEECCEECCCCCHHHHH
T ss_conf 78899848------999764211179986998899989999979999999927-86699-86798999983407899998
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 7389990388679999999999998740699877699999-----99999998839974222223585566789889899
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqR 303 (746)
++++||+|++.+|+. ||+||+.++... .++++.. ...++.++ .+++..++.++.. ...||||||||
T Consensus 417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~-~~~LSgGqrQr 487 (587)
T 3qf4_A 417 GHISAVPQETVLFSG-TIKENLKWGRED-----ATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERG-GRNFSGGQKQR 487 (587)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSS-SCSSCHHHHHH
T ss_pred HHEEEECCCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHH--HCCCCHHHHHCCC-CCCCCHHHHHH
T ss_conf 413897789867675-599998524889-----99999999999968499997--5653121275189-89929999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789994999999999999999999999978977999956889088850677999709769995297789
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 vsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||++||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+|+|+
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHHHH
T ss_conf 999999972999999979754479999999999999867-99989998227688--981998999989989997889999
Q ss_pred HH
Q ss_conf 99
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
++
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=404.93 Aligned_cols=353 Identities=25% Similarity=0.341 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..+..++...+..+...|...+.+++|+++.+..+.+++.+..........+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999824999998166499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCC----CHHHHCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3564200221000000002556----80000168------------9998899940000267789988899998710899
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (746)
+.++..+.++.|....+..+.. |...+... +..+..+.+.+.+... .....+.....+++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGV----GAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCT----TCCCCCCCSCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCEEEE
T ss_conf 99998599589999999999999999999999999999999999999999976897666787----76666777880799
Q ss_pred EEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999622566644454002127999488099998799862899999997399999974189998870792----102
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (746)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~ 228 (746)
+||+|+|. +.++++|+|+|+++++||+++|+||||||||||+++|+| +++|. +|+|.+||+++.+ .++
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p~-~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR-FYDVT-SGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT-SSCCS-EEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC------CCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCC-CCEEEECCEEHHHCCHHHHH
T ss_conf 99999758------999741343379987999999989999859999999846-78899-96799999984427899996
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 738999038867999999999999874069987769999999-----999998839974222223585566789889899
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqR 303 (746)
++++||+|++.+|+. ||+||+.++... .++++..+. .++.++ .++++.++.+|+. ...||||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~lp~g~~t~~~~~-g~~LSgGq~Qr 485 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRPT-----ATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGER-GVKLSGGQKQR 485 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCHHHHHHHHHHTTCHHHHH--TSTTGGGCBCCGG-GTTSCHHHHHH
T ss_pred HHEEEEECCCCCCCC-CHHHHHHCCCCC-----CCHHHHHHHHHHHCCHHHHH--HCCCHHHHHHCCC-CCCCCHHHHHH
T ss_conf 006899289834764-599998527999-----88999999998809599997--5733010253068-89679999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789994999999999999999999999978977999956889088850677999709769995297789
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 vsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||++||+.++..+.+.++++. +++|+|+++|+++. .+.+|+|++|++|++++.|+|+|+
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHHH
T ss_conf 999999974999999978654579999999999999980-89979998317899--971998999989989998889999
Q ss_pred HH
Q ss_conf 99
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
++
T Consensus 563 ~~ 564 (578)
T 4a82_A 563 IA 564 (578)
T ss_dssp HH
T ss_pred HH
T ss_conf 85
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=404.68 Aligned_cols=356 Identities=23% Similarity=0.280 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..+..+++..+..+...|...+.+++|+++.+....+++.+..........+.....+..............+.-+..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999737999997487099999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCCCHH----HHCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3564200221000000002556800----0016------------89998899940000267789988899998710899
Q 004537 89 AALSRASSASLGLSFSFTGFTMPPD----EIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (746)
+.++..+.++.|....+..+..... .+.. .+..+..+.+++.+.. .....+.....+++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-----~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-----DAVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-----SCCCCCSCCCCEEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCEEEE
T ss_conf 9999859978999999999999999999999999999999999999999997688777777-----77777777771899
Q ss_pred EEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999622566644454002127999488099998799862899999997399999974189998870792----102
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (746)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~ 228 (746)
+||+|+|. +++++|+|+|+++++||+++|+||||||||||+++|+| +++|. +|+|.+||+++.+ .++
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p~-~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR-FYDVD-RGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT-SSCCS-EEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CEEEEECCEEHHHCCHHHHH
T ss_conf 99899779-------99860122279986998899989999969999999945-85799-80899999983018899998
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73899903886799999999999987406998776999999999999883997422222358556678988989999999
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~ 308 (746)
++++||+|++.+|+. ||+||+.++......+++.+..+....++.++. +++..++.+|+. ...||||||||++|||
T Consensus 429 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~t~~~~~-g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 429 SSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH--LPEGYETVLTDN-GEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHEEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHT--STTGGGCBCHHH-HTTSCHHHHHHHHHHH
T ss_pred HCEEEEECCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHH--CCCCCCCHHCCC-CCCCCHHHHHHHHHHH
T ss_conf 410899079823246-399997447999999999999999697888974--645323642278-8987999999999999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99639978999499999999999999999999997897799995688908885067799970976999529778999
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
+|+.+|++++|||||++||+.++..+.+.++++. +|+|+|+++|+++. ...+|+|++|++|++++.|+|+|+++
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9964999999989766799999999999999980-89989999427789--97199899998999998778999986
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=399.34 Aligned_cols=356 Identities=19% Similarity=0.257 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..+..++...+..+...|...+.+++|+++.+..+.+++.+..........+.....+..............+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999961999998376899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCC----CHHHHCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 3564200221000000002556----8000016899------98899940000267789988899998710899948999
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~ 158 (746)
+.++..+.++.|.+..+..+.. |...+..... .....+.+.++..+...+.....+.....++++||+|+
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 350 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFT 350 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEEC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99998499989999999999999999999999999999999999999999975998766777777788884799988997
Q ss_pred EEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCCCCEEEE
Q ss_conf 9622566644454002127999488099998799862899999997399999974189998870792----102738999
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~~~i~yV 234 (746)
|. +.++++|+|+|+++++||.++|+||||||||||+++|+| +++| .+|+|.+||+++.+ .++++++||
T Consensus 351 y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g-~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b60_A 351 YP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR-FYDI-DEGHILMDGHDLREYTLASLRNQVALV 422 (582)
T ss_dssp SS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT-TTCC-SEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred CC------CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCC-CCCEEEECCEECCCCCHHHHHHHCEEE
T ss_conf 39------999744156159976999899989999989999999861-0689-897697999982306999999608088
Q ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0388679999999999998740699877699999999999988399-------742222235855667898898999999
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 235 ~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~ig~~~~~~LSGGqrqRvsIA 307 (746)
+|++.+|+. ||+||+.++.. + ..++ +++++.++..++ +++.++.+|+. ...||||||||++||
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 423 SQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIA 492 (582)
T ss_dssp CSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHCCCC---C-CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 068747787-89999854599---9-9899----999999998497999984504114511479-887899999999999
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999639978999499999999999999999999997897799995688908885067799970976999529778999
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
|+|+.+|++++|||||++||+.++..+.+.++++.+ |+|+|+++|+++. .+.+|+|++|++|++++.|+++++++
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999728998999786555798999999999999967-9979999454778--98599899997888988458999987
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=398.48 Aligned_cols=350 Identities=21% Similarity=0.297 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..+..++...+..+...|...+.+++|+++.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999951999997087599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCC----CHHHHCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3564200221000000002556----80000168------------9998899940000267789988899998710899
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (746)
+.++..+.++.|.+..+..+.. |...+... +..+..+.+.+.+.+ . ...+.....+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~-~~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG-----K-YEAERVNGEVDV 344 (582)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C-CCCCCCCCEEEE
T ss_conf 9999859988999999999999999999999999999999999999999997589767777-----7-777778882899
Q ss_pred EEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999622566644454002127999488099998799862899999997399999974189998870792----102
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (746)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~ 228 (746)
+||+|+|. +.++++|+|+|+++++||.++|+||||||||||+++|+| +++|. +|+|.+||+++.+ .++
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g-~~~p~-~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR-FYDVD-SGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEECC------CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CCEEEECCEEHHHCCHHHHH
T ss_conf 99899728------998654004169987999899989999979999999965-77899-98798999985638899996
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7389990388679999999999998740699877699999999999988399-------742222235855667898898
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~ig~~~~~~LSGGqr 301 (746)
++++||+|++.+|+. ||+||+.++.. + ..++ +++++.++..++ +++.||.+|+. ...||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCC---C-CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCHHCCC-CCCCCHHHH
T ss_conf 485898279905310-29999856688---9-9999----999999998798999984765334510688-884799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 99999999963997899949999999999999999999999789779999568890888506779997097699952977
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~ 381 (746)
||++|||+|+.+|++++|||||++||+.++..+.+.++++.+ |+|+|+++|+++. .+.+|+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHH
T ss_conf 999999999749999999785446899999999999999728-9989999368899--9819989999899899977899
Q ss_pred HHHH
Q ss_conf 8999
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++++
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHH
T ss_conf 9984
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=395.91 Aligned_cols=355 Identities=24% Similarity=0.340 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHH
Q ss_conf 76788799999999997309885454244578873100124455431489867777766104221333211001000002
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..+..++...+..+...|...+.+++|+++.+..+.+++.+..........+.....+..............+.-++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 267 (595)
T 2yl4_A 188 KLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 267 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999811999998375699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHCCCCC----CHHHHCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EE
Q ss_conf 3564200221000000002556----80000168------------9998899940000267789988899998710-89
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIY-LK 151 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 151 (746)
+.++..+.++.|.+..|..+.. |...+... +..+..+.+++.+.... . ...+..... ++
T Consensus 268 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~-~~~~~~~~~~i~ 343 (595)
T 2yl4_A 268 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG---V-ILNEKSFQGALE 343 (595)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS---B-CCCTTTCCCCEE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---C-CCCCCCCCCEEE
T ss_conf 999986997899999999999999999999999999999999999999999838976677778---7-777678998389
Q ss_pred EEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HC
Q ss_conf 99489999622566644454002127999488099998799862899999997399999974189998870792----10
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++||+|+|.. ++++++|+|+|+++++||+++|+||||||||||+++|+| +++| .+|+|.+||+++.+ .+
T Consensus 344 ~~~v~~~y~~-----~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g-~~~p-~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 344 FKNVHFAYPA-----RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR-LYDP-ASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEECSS-----CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT-SSCC-SEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEECC-----CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEEHHHCCHHHH
T ss_conf 9988998589-----988812011279984998899989999979999999825-8578-98379999998111799999
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2738999038867999999999999874069987769999999999998839-------974222223585566789889
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 228 ~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~ig~~~~~~LSGGq 300 (746)
+++++||+|++.+|+. ||+||+.++.... ...++ ++++++++..+ ++++.|+.+|+. ...|||||
T Consensus 417 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgGq 488 (595)
T 2yl4_A 417 RSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGGQ 488 (595)
T ss_dssp HHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHHH
T ss_pred HHCEEEECCCCCCCCC-CHHHHHHHCCCCC--CCCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCC-CCCCCHHH
T ss_conf 7322898368832687-7999984058776--65689----999999998697999974732013501688-78689999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 89999999996399789994999999999999999999999978977999956889088850677999709769995297
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~ 380 (746)
|||++|||+|+.+|++++|||||++||+.++..+.+.++++.+ ++|+|+++|+++. .+.+|+|++|++|++++.|++
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH--HHHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCH
T ss_conf 9999999999759999999886668998999999999999965-9979999468789--975998999989989997889
Q ss_pred HHHHH
Q ss_conf 78999
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++++
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHH
T ss_conf 99974
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=394.49 Aligned_cols=355 Identities=19% Similarity=0.282 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCHHCHHH
Q ss_conf 67887999999999973098854542445788731001244554314898677777661042213332110010000023
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++++......+.|.....+|+|+++.+....+++.+.+........+.+...+.....+.....-..+..++.|+
T Consensus 878 ~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 957 (1284)
T 3g5u_A 878 QALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGA 957 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999889999984659999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHCCCCC----CHHHHCCCCCCCCCCCCC----------CCCCCCCC--C-CCCCCCCCCCCEEEE
Q ss_conf 564200221000000002556----800001689998899940----------00026778--9-988899998710899
Q 004537 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKPFSDDDIPE----------DIEAGTRE--R-PKFQTEPTLPIYLKF 152 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~-~~~~~~~~~~~~i~~ 152 (746)
.++..+.++.+....+..+.. +...+... ..++.. .++..+.. . ......+.....+++
T Consensus 958 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~ 1033 (1284)
T 3g5u_A 958 YLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSF----APDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQF 1033 (1284)
T ss_dssp CCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSS----SCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEE
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 999909806999999999999999999999999----9999999999999999983887666655566545677785799
Q ss_pred EEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH----HCC
Q ss_conf 9489999622566644454002127999488099998799862899999997399999974189998870792----102
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (746)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~----~~~ 228 (746)
+||+|+|.. +++.++|+|+|+++++||.+||+||||||||||+++|.| +++|. +|+|.+||++++. .++
T Consensus 1034 ~~v~~~y~~-----~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g-~~~p~-~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1034 SGVVFNYPT-----RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER-FYDPM-AGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp EEEEBCCSC-----GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT-SSCCS-EEEEESSSSCTTSSCHHHHT
T ss_pred EEEEEECCC-----CCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CCEEEECCEECCCCCHHHHH
T ss_conf 998997799-----998700203059976998899988999978999999946-86789-97798999980007899997
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 73899903886799999999999987406998776999999-----9999998839974222223585566789889899
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqR 303 (746)
++++||+||+.+|+ .||+||+.++...+ ..+.++..+ .+++.++ .++++.||.+|+. ...||||||||
T Consensus 1107 ~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSGGQKQR 1179 (1284)
T ss_dssp TSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCHHHHHH
T ss_pred HCEEEECCCCCCCC-CCHHHHHHCCCCCC---CCCHHHHHHHHHHHCCHHHHH--HCCCCCCCCCCCC-CCCCCHHHHHH
T ss_conf 02689877874066-66999974668778---999999999999839599997--2704245611788-89338999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999996399789994999999999999999999999978977999956889088850677999709769995297789
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 vsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|+||+|||||++||+.++..+.+.|++. .+|+|+|+++|+++. ...+|+|++|++|++++.|+|+++
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEETBEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH--HHCCCEEEEEECCEEEEECCHHHH
T ss_conf 99999997499999986875557999999999999986-799989999558799--980998999989989997789999
Q ss_pred HH
Q ss_conf 99
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
++
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred HH
T ss_conf 84
Done!