Query 004538
Match_columns 746
No_of_seqs 373 out of 2847
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 1E-154 2E-159 1242.4 46.0 664 39-730 51-747 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 1.8E-82 3.9E-87 686.5 38.8 563 79-730 58-695 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 2E-82 4.4E-87 693.9 25.0 616 58-731 78-859 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 2.9E-78 6.3E-83 679.4 45.2 461 44-576 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 1.7E-72 3.7E-77 652.7 52.8 541 77-732 26-573 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 6.3E-69 1.4E-73 601.1 41.3 412 83-573 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 3.3E-67 7.1E-72 584.7 40.4 413 76-575 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 4.7E-66 1E-70 574.2 38.5 407 83-562 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 3.1E-59 6.7E-64 519.4 40.9 401 82-566 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 1.4E-58 3.1E-63 513.2 41.4 410 74-568 3-417 (418)
11 PRK05277 chloride channel prot 100.0 1E-57 2.3E-62 511.9 45.3 411 77-568 2-417 (438)
12 COG0038 EriC Chloride channel 100.0 2.7E-55 5.8E-60 489.4 41.2 411 75-572 22-435 (443)
13 cd01034 EriC_like ClC chloride 100.0 3.3E-55 7.1E-60 484.6 38.8 386 87-562 1-390 (390)
14 PF00654 Voltage_CLC: Voltage 100.0 1.2E-55 2.6E-60 482.4 34.7 349 130-555 2-355 (355)
15 cd01033 ClC_like Putative ClC 100.0 4.6E-55 9.9E-60 482.0 38.4 385 83-557 1-387 (388)
16 cd00400 Voltage_gated_ClC CLC 100.0 2.2E-52 4.9E-57 462.3 37.7 383 83-550 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 2.2E-49 4.8E-54 436.1 38.8 375 79-562 2-378 (378)
18 PRK03655 putative ion channel 100.0 5.1E-46 1.1E-50 410.6 37.9 384 73-554 10-398 (414)
19 cd01034 EriC_like ClC chloride 99.7 4.7E-16 1E-20 172.6 20.0 184 73-284 199-382 (390)
20 cd01033 ClC_like Putative ClC 99.7 2E-16 4.3E-21 175.1 16.5 184 74-285 203-386 (388)
21 PRK05277 chloride channel prot 99.7 2.1E-15 4.6E-20 169.8 17.6 189 74-284 215-403 (438)
22 cd00400 Voltage_gated_ClC CLC 99.6 1.1E-14 2.3E-19 161.7 14.8 178 73-276 203-380 (383)
23 PRK01862 putative voltage-gate 99.6 2.4E-14 5.3E-19 166.8 16.0 183 75-284 238-421 (574)
24 PRK01610 putative voltage-gate 99.6 6.3E-14 1.4E-18 156.3 16.7 184 74-284 219-403 (418)
25 cd01031 EriC ClC chloride chan 99.5 4.1E-13 9E-18 149.8 16.5 187 73-284 204-390 (402)
26 cd03682 ClC_sycA_like ClC sycA 99.5 9E-13 1.9E-17 145.7 18.2 172 73-281 197-370 (378)
27 COG3448 CBS-domain-containing 99.3 1.2E-11 2.6E-16 125.0 13.1 125 581-732 242-374 (382)
28 PF00654 Voltage_CLC: Voltage 99.3 7.5E-11 1.6E-15 129.5 17.7 185 74-282 162-353 (355)
29 COG0038 EriC Chloride channel 99.2 1.4E-10 3E-15 130.4 16.7 182 76-285 235-418 (443)
30 PRK03655 putative ion channel 99.2 3.7E-10 8E-15 125.7 17.8 173 74-282 221-397 (414)
31 cd03684 ClC_3_like ClC-3-like 99.2 2.5E-10 5.4E-15 128.7 16.5 194 74-285 205-427 (445)
32 COG2524 Predicted transcriptio 99.1 5E-11 1.1E-15 118.7 6.5 121 582-730 170-291 (294)
33 PRK11543 gutQ D-arabinose 5-ph 99.1 1.3E-10 2.9E-15 125.9 9.0 145 557-728 164-318 (321)
34 PRK10892 D-arabinose 5-phospha 99.1 1.9E-10 4.1E-15 125.0 9.1 144 557-728 169-323 (326)
35 cd03685 ClC_6_like ClC-6-like 99.1 1.9E-09 4.1E-14 122.2 16.6 168 73-284 274-441 (466)
36 COG4109 Predicted transcriptio 99.0 1.9E-10 4.1E-15 119.2 5.6 155 539-738 157-314 (432)
37 cd01036 ClC_euk Chloride chann 99.0 8.4E-09 1.8E-13 115.5 16.6 170 74-284 234-409 (416)
38 PF00571 CBS: CBS domain CBS d 99.0 1.5E-09 3.3E-14 85.9 6.5 56 675-730 1-56 (57)
39 PRK07807 inosine 5-monophospha 98.8 6.6E-09 1.4E-13 117.2 8.4 124 577-731 82-206 (479)
40 cd03683 ClC_1_like ClC-1-like 98.8 7.1E-08 1.5E-12 108.4 15.1 172 74-284 230-406 (426)
41 TIGR00400 mgtE Mg2+ transporte 98.7 3.3E-08 7.2E-13 111.9 8.3 127 582-734 129-256 (449)
42 cd04603 CBS_pair_KefB_assoc Th 98.7 4.4E-08 9.5E-13 88.5 6.9 80 648-727 30-110 (111)
43 COG3620 Predicted transcriptio 98.6 8.3E-08 1.8E-12 89.2 7.6 119 582-731 63-185 (187)
44 cd04619 CBS_pair_6 The CBS dom 98.6 1.9E-07 4.1E-12 84.7 9.0 54 674-727 60-113 (114)
45 TIGR01303 IMP_DH_rel_1 IMP deh 98.6 1E-07 2.2E-12 107.6 8.4 120 580-731 84-204 (475)
46 PRK15094 magnesium/cobalt effl 98.6 4.4E-08 9.6E-13 104.3 4.6 126 581-734 64-193 (292)
47 COG2239 MgtE Mg/Co/Ni transpor 98.5 8.5E-08 1.9E-12 106.6 5.5 126 584-735 132-258 (451)
48 TIGR03520 GldE gliding motilit 98.5 1E-07 2.3E-12 106.3 5.6 124 581-733 188-314 (408)
49 cd04641 CBS_pair_28 The CBS do 98.5 6.3E-07 1.4E-11 82.0 9.3 53 676-728 68-120 (120)
50 PRK07107 inosine 5-monophospha 98.5 1.8E-07 4E-12 106.2 6.7 75 653-729 142-219 (502)
51 cd04600 CBS_pair_HPP_assoc Thi 98.5 2.3E-07 5.1E-12 85.1 6.3 57 672-728 68-124 (124)
52 cd04607 CBS_pair_NTP_transfera 98.5 7.7E-07 1.7E-11 80.3 9.1 54 674-727 59-112 (113)
53 cd04631 CBS_pair_18 The CBS do 98.4 8.7E-07 1.9E-11 81.4 9.4 56 673-728 70-125 (125)
54 cd04639 CBS_pair_26 The CBS do 98.4 3.2E-07 6.9E-12 82.4 5.8 54 674-727 57-110 (111)
55 cd04608 CBS_pair_PALP_assoc Th 98.4 1.3E-07 2.9E-12 87.5 2.9 57 673-729 59-124 (124)
56 cd04595 CBS_pair_DHH_polyA_Pol 98.4 3.7E-07 8E-12 81.9 5.4 53 674-727 57-109 (110)
57 cd04586 CBS_pair_BON_assoc Thi 98.4 3.7E-07 8E-12 85.5 5.6 55 673-728 81-135 (135)
58 cd04620 CBS_pair_7 The CBS dom 98.4 1.2E-06 2.6E-11 79.3 8.7 55 674-728 59-115 (115)
59 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 4.9E-07 1.1E-11 81.3 6.2 55 673-727 58-113 (114)
60 TIGR01137 cysta_beta cystathio 98.4 5.9E-07 1.3E-11 102.3 8.2 122 578-729 329-453 (454)
61 cd04630 CBS_pair_17 The CBS do 98.4 6.6E-07 1.4E-11 81.0 6.7 55 673-728 60-114 (114)
62 cd04618 CBS_pair_5 The CBS dom 98.4 3.7E-07 8E-12 80.9 4.7 45 683-727 52-97 (98)
63 cd04593 CBS_pair_EriC_assoc_ba 98.4 7.3E-07 1.6E-11 80.8 6.5 56 673-728 58-115 (115)
64 cd04801 CBS_pair_M50_like This 98.4 1.6E-06 3.4E-11 78.4 8.5 53 675-727 59-113 (114)
65 cd04627 CBS_pair_14 The CBS do 98.4 2E-06 4.4E-11 79.0 9.3 52 675-726 70-121 (123)
66 cd04596 CBS_pair_DRTGG_assoc T 98.3 9.7E-07 2.1E-11 79.1 6.7 55 673-727 53-107 (108)
67 cd04625 CBS_pair_12 The CBS do 98.3 1.9E-06 4E-11 77.5 8.5 54 674-728 59-112 (112)
68 COG3448 CBS-domain-containing 98.3 3.7E-07 7.9E-12 93.0 4.0 58 672-729 244-301 (382)
69 cd04617 CBS_pair_4 The CBS dom 98.3 7.7E-07 1.7E-11 81.2 5.7 55 673-727 58-117 (118)
70 cd04624 CBS_pair_11 The CBS do 98.3 2.9E-06 6.2E-11 76.3 9.3 54 674-727 58-111 (112)
71 cd04803 CBS_pair_15 The CBS do 98.3 1.1E-06 2.3E-11 80.5 6.5 57 672-728 66-122 (122)
72 cd04636 CBS_pair_23 The CBS do 98.3 1.2E-06 2.7E-11 81.6 7.1 55 673-728 78-132 (132)
73 cd04629 CBS_pair_16 The CBS do 98.3 2.1E-06 4.5E-11 77.4 8.1 54 674-728 61-114 (114)
74 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 2.7E-06 5.9E-11 76.1 8.8 54 674-727 57-110 (111)
75 cd04615 CBS_pair_2 The CBS dom 98.3 1.2E-06 2.6E-11 78.9 6.4 55 673-727 58-112 (113)
76 cd04623 CBS_pair_10 The CBS do 98.3 3.3E-06 7.2E-11 75.7 9.3 54 674-728 60-113 (113)
77 cd04583 CBS_pair_ABC_OpuCA_ass 98.3 3.2E-06 7E-11 75.4 9.1 54 674-727 55-108 (109)
78 cd04614 CBS_pair_1 The CBS dom 98.3 1.5E-06 3.2E-11 76.6 6.7 46 683-728 51-96 (96)
79 TIGR00393 kpsF KpsF/GutQ famil 98.3 1.1E-06 2.4E-11 92.7 7.0 112 583-721 154-268 (268)
80 cd04605 CBS_pair_MET2_assoc Th 98.3 3.7E-06 8E-11 75.3 9.4 53 675-727 57-109 (110)
81 cd04587 CBS_pair_CAP-ED_DUF294 98.3 1E-06 2.3E-11 79.2 5.7 55 673-727 58-112 (113)
82 COG2905 Predicted signal-trans 98.3 1.8E-06 3.9E-11 95.5 8.2 60 671-731 212-271 (610)
83 TIGR01302 IMP_dehydrog inosine 98.3 8.3E-07 1.8E-11 100.4 5.7 116 585-730 81-201 (450)
84 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 1.9E-06 4.1E-11 77.6 7.0 55 673-727 59-113 (114)
85 cd04585 CBS_pair_ACT_assoc2 Th 98.3 3.2E-06 7E-11 76.9 8.6 56 673-728 67-122 (122)
86 cd04602 CBS_pair_IMPDH_2 This 98.3 1.6E-06 3.5E-11 78.5 6.4 55 673-727 57-113 (114)
87 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 4.1E-06 8.8E-11 75.0 8.9 55 674-728 57-111 (111)
88 cd04601 CBS_pair_IMPDH This cd 98.3 2E-06 4.3E-11 76.9 6.7 55 673-727 54-109 (110)
89 cd04588 CBS_pair_CAP-ED_DUF294 98.3 1.5E-06 3.4E-11 77.8 5.9 55 673-727 55-109 (110)
90 PLN02274 inosine-5'-monophosph 98.2 1.3E-06 2.8E-11 99.6 6.6 59 673-731 163-223 (505)
91 cd04582 CBS_pair_ABC_OpuCA_ass 98.2 2.5E-06 5.3E-11 75.9 7.1 54 674-727 52-105 (106)
92 PRK05567 inosine 5'-monophosph 98.2 1.3E-06 2.8E-11 99.9 6.5 116 585-730 88-205 (486)
93 cd04642 CBS_pair_29 The CBS do 98.2 2.6E-06 5.7E-11 78.6 7.3 51 677-727 75-125 (126)
94 cd04635 CBS_pair_22 The CBS do 98.2 2.2E-06 4.7E-11 78.4 6.6 57 672-728 66-122 (122)
95 cd04622 CBS_pair_9 The CBS dom 98.2 4.9E-06 1.1E-10 74.8 8.7 54 674-727 59-112 (113)
96 PTZ00314 inosine-5'-monophosph 98.2 1.2E-06 2.5E-11 99.9 5.6 58 673-730 159-218 (495)
97 cd04626 CBS_pair_13 The CBS do 98.2 2.3E-06 5E-11 76.9 6.2 54 673-727 57-110 (111)
98 cd04591 CBS_pair_EriC_assoc_eu 98.2 2.1E-06 4.7E-11 76.8 5.7 50 678-728 56-105 (105)
99 cd04640 CBS_pair_27 The CBS do 98.2 1.5E-06 3.2E-11 80.4 4.6 56 672-727 63-125 (126)
100 cd04590 CBS_pair_CorC_HlyC_ass 98.2 2.5E-06 5.4E-11 76.6 5.3 53 674-727 58-110 (111)
101 cd04589 CBS_pair_CAP-ED_DUF294 98.2 3.2E-06 7E-11 75.9 6.0 56 672-728 56-111 (111)
102 cd04621 CBS_pair_8 The CBS dom 98.2 4.4E-06 9.6E-11 78.5 7.1 54 673-727 81-134 (135)
103 cd04633 CBS_pair_20 The CBS do 98.2 4.3E-06 9.4E-11 76.2 6.9 55 673-728 67-121 (121)
104 cd04800 CBS_pair_CAP-ED_DUF294 98.1 3.9E-06 8.5E-11 75.3 6.2 54 673-727 57-110 (111)
105 cd04637 CBS_pair_24 The CBS do 98.1 6.5E-06 1.4E-10 75.3 7.6 55 674-728 68-122 (122)
106 cd04643 CBS_pair_30 The CBS do 98.1 2.9E-06 6.4E-11 76.7 5.2 54 673-728 63-116 (116)
107 cd04609 CBS_pair_PALP_assoc2 T 98.1 3.4E-06 7.3E-11 75.3 5.5 54 673-728 57-110 (110)
108 cd04606 CBS_pair_Mg_transporte 98.1 3.9E-06 8.4E-11 75.2 5.8 77 648-728 31-108 (109)
109 cd04632 CBS_pair_19 The CBS do 98.1 1E-05 2.2E-10 74.8 8.5 56 673-728 71-128 (128)
110 cd04599 CBS_pair_GGDEF_assoc2 98.1 6.5E-06 1.4E-10 72.9 6.9 52 674-726 52-103 (105)
111 cd04597 CBS_pair_DRTGG_assoc2 98.1 5E-06 1.1E-10 75.6 6.3 55 673-727 58-112 (113)
112 COG0517 FOG: CBS domain [Gener 98.1 1.7E-05 3.7E-10 71.6 9.0 53 674-726 63-117 (117)
113 cd02205 CBS_pair The CBS domai 98.1 1.7E-05 3.7E-10 70.2 8.8 53 675-727 60-112 (113)
114 cd04594 CBS_pair_EriC_assoc_ar 98.1 6.5E-06 1.4E-10 73.2 6.0 53 674-727 51-103 (104)
115 COG2524 Predicted transcriptio 98.1 5.9E-06 1.3E-10 83.1 5.8 61 672-733 171-231 (294)
116 cd04802 CBS_pair_3 The CBS dom 98.0 1.9E-05 4.1E-10 70.9 8.6 53 674-727 59-111 (112)
117 cd04584 CBS_pair_ACT_assoc Thi 98.0 8.4E-06 1.8E-10 74.2 5.7 55 672-727 66-120 (121)
118 cd04610 CBS_pair_ParBc_assoc T 98.0 1.2E-05 2.6E-10 71.5 6.3 55 674-728 53-107 (107)
119 cd04598 CBS_pair_GGDEF_assoc T 98.0 2.4E-05 5.2E-10 71.0 7.7 54 674-727 62-118 (119)
120 COG3620 Predicted transcriptio 97.9 1.1E-05 2.3E-10 75.5 4.5 62 671-733 63-124 (187)
121 cd04634 CBS_pair_21 The CBS do 97.9 5E-05 1.1E-09 72.0 8.5 54 673-727 89-142 (143)
122 cd04638 CBS_pair_25 The CBS do 97.8 5.4E-05 1.2E-09 67.3 7.7 52 675-727 54-105 (106)
123 PRK11573 hypothetical protein; 97.8 2.3E-05 5E-10 87.7 6.0 131 581-736 184-317 (413)
124 cd04641 CBS_pair_28 The CBS do 97.8 6.7E-05 1.5E-09 68.5 7.3 50 682-731 2-51 (120)
125 cd04618 CBS_pair_5 The CBS dom 97.8 5.3E-05 1.2E-09 67.0 6.2 47 683-729 3-50 (98)
126 KOG0475 Cl- channel CLC-3 and 97.7 9.9E-05 2.1E-09 82.8 8.7 187 75-278 308-509 (696)
127 PRK14869 putative manganese-de 97.7 6.2E-05 1.4E-09 87.7 7.6 61 673-733 68-128 (546)
128 smart00116 CBS Domain in cysta 97.7 0.0001 2.3E-09 54.5 6.1 47 683-729 2-48 (49)
129 COG1253 TlyC Hemolysins and re 97.7 5.4E-05 1.2E-09 85.4 6.3 131 581-736 203-334 (429)
130 PRK14869 putative manganese-de 97.7 5.9E-05 1.3E-09 87.9 6.4 60 671-730 244-304 (546)
131 cd04592 CBS_pair_EriC_assoc_eu 97.6 0.00014 3.1E-09 68.3 7.4 50 682-731 2-51 (133)
132 cd04614 CBS_pair_1 The CBS dom 97.6 0.00018 3.9E-09 63.2 6.7 47 682-728 2-48 (96)
133 KOG0474 Cl- channel CLC-7 and 97.6 0.00014 3E-09 81.4 7.0 89 442-534 181-278 (762)
134 cd04608 CBS_pair_PALP_assoc Th 97.5 0.00024 5.3E-09 65.5 7.3 50 681-730 2-51 (124)
135 PRK10892 D-arabinose 5-phospha 97.5 0.00016 3.5E-09 78.6 6.8 59 672-730 201-261 (326)
136 PRK11543 gutQ D-arabinose 5-ph 97.5 0.00016 3.4E-09 78.5 6.4 59 672-730 196-256 (321)
137 cd04624 CBS_pair_11 The CBS do 97.4 0.00042 9.1E-09 62.0 7.2 50 682-731 2-51 (112)
138 cd04605 CBS_pair_MET2_assoc Th 97.4 0.00046 9.9E-09 61.6 7.4 50 681-730 2-51 (110)
139 cd04613 CBS_pair_SpoIVFB_EriC_ 97.4 0.00041 9E-09 62.1 6.8 51 681-731 1-51 (114)
140 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00046 9.9E-09 61.1 6.9 48 682-729 2-49 (106)
141 cd04643 CBS_pair_30 The CBS do 97.4 0.00048 1E-08 62.0 7.0 49 682-730 2-50 (116)
142 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.00054 1.2E-08 61.8 7.2 49 682-730 2-50 (115)
143 cd04600 CBS_pair_HPP_assoc Thi 97.3 0.00053 1.1E-08 62.6 7.2 51 681-731 2-52 (124)
144 cd04617 CBS_pair_4 The CBS dom 97.3 0.00063 1.4E-08 61.8 7.4 49 682-730 2-50 (118)
145 cd04623 CBS_pair_10 The CBS do 97.3 0.00063 1.4E-08 60.7 7.3 50 682-731 2-51 (113)
146 TIGR01137 cysta_beta cystathio 97.3 0.00043 9.3E-09 78.9 7.4 61 671-731 333-393 (454)
147 cd04603 CBS_pair_KefB_assoc Th 97.3 0.00062 1.3E-08 61.2 6.8 47 682-728 2-48 (111)
148 cd04619 CBS_pair_6 The CBS dom 97.3 0.00065 1.4E-08 61.3 6.7 48 683-730 3-50 (114)
149 cd04642 CBS_pair_29 The CBS do 97.3 0.00053 1.2E-08 63.1 6.1 49 682-730 2-50 (126)
150 cd04621 CBS_pair_8 The CBS dom 97.2 0.00065 1.4E-08 63.7 6.7 49 682-730 2-50 (135)
151 cd04632 CBS_pair_19 The CBS do 97.2 0.00083 1.8E-08 61.9 7.2 48 682-729 2-49 (128)
152 TIGR00393 kpsF KpsF/GutQ famil 97.2 0.00044 9.5E-09 72.9 6.0 59 672-730 154-213 (268)
153 cd04586 CBS_pair_BON_assoc Thi 97.2 0.00066 1.4E-08 63.3 6.6 50 681-730 2-51 (135)
154 cd04630 CBS_pair_17 The CBS do 97.2 0.00085 1.8E-08 60.4 6.9 49 682-730 2-51 (114)
155 cd04801 CBS_pair_M50_like This 97.2 0.00072 1.6E-08 60.8 6.4 49 682-730 2-51 (114)
156 cd04631 CBS_pair_18 The CBS do 97.2 0.00075 1.6E-08 61.7 6.5 50 682-731 2-52 (125)
157 cd04640 CBS_pair_27 The CBS do 97.2 0.00082 1.8E-08 61.9 6.8 46 682-727 2-47 (126)
158 cd04629 CBS_pair_16 The CBS do 97.2 0.00067 1.5E-08 60.8 6.1 49 682-730 2-50 (114)
159 cd04639 CBS_pair_26 The CBS do 97.2 0.00074 1.6E-08 60.3 6.3 49 682-730 2-50 (111)
160 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00086 1.9E-08 59.7 6.7 49 681-730 1-49 (111)
161 cd04636 CBS_pair_23 The CBS do 97.2 0.00067 1.5E-08 63.0 6.2 50 682-731 2-51 (132)
162 TIGR01186 proV glycine betaine 97.2 0.0014 3E-08 72.2 9.2 57 675-732 304-360 (363)
163 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.0012 2.6E-08 58.5 7.4 49 681-729 2-50 (109)
164 cd04615 CBS_pair_2 The CBS dom 97.2 0.00098 2.1E-08 59.7 6.8 48 682-729 2-49 (113)
165 COG2905 Predicted signal-trans 97.2 0.00044 9.5E-09 77.1 5.2 60 673-732 149-208 (610)
166 cd04635 CBS_pair_22 The CBS do 97.1 0.00079 1.7E-08 61.2 6.0 47 682-728 2-48 (122)
167 PRK07807 inosine 5-monophospha 97.1 0.00076 1.6E-08 76.6 7.0 56 672-727 88-143 (479)
168 cd04627 CBS_pair_14 The CBS do 97.1 0.00096 2.1E-08 61.0 6.5 49 682-730 2-51 (123)
169 cd04588 CBS_pair_CAP-ED_DUF294 97.1 0.0013 2.8E-08 58.6 7.2 48 682-730 2-49 (110)
170 KOG0476 Cl- channel CLC-2 and 97.1 0.051 1.1E-06 62.8 21.1 62 671-732 586-649 (931)
171 cd04609 CBS_pair_PALP_assoc2 T 97.1 0.0011 2.4E-08 58.8 6.6 49 682-731 2-50 (110)
172 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.0014 2.9E-08 58.6 7.0 50 682-731 2-52 (111)
173 cd04607 CBS_pair_NTP_transfera 97.1 0.0015 3.2E-08 58.6 7.2 49 682-730 3-51 (113)
174 COG0517 FOG: CBS domain [Gener 97.1 0.0018 3.9E-08 58.2 7.5 55 678-733 4-58 (117)
175 cd04637 CBS_pair_24 The CBS do 97.0 0.0016 3.5E-08 59.2 7.0 48 682-730 2-49 (122)
176 cd04803 CBS_pair_15 The CBS do 97.0 0.0013 2.8E-08 59.8 6.4 49 682-730 2-50 (122)
177 cd02205 CBS_pair The CBS domai 97.0 0.0018 4E-08 57.0 7.1 50 682-731 2-51 (113)
178 cd04584 CBS_pair_ACT_assoc Thi 97.0 0.0014 3E-08 59.4 6.3 48 682-729 2-49 (121)
179 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0015 3.3E-08 58.1 6.4 47 682-728 3-49 (108)
180 cd04626 CBS_pair_13 The CBS do 97.0 0.0017 3.7E-08 58.0 6.6 49 682-730 2-50 (111)
181 cd04585 CBS_pair_ACT_assoc2 Th 97.0 0.0018 3.8E-08 58.6 6.6 48 682-730 2-49 (122)
182 cd04634 CBS_pair_21 The CBS do 97.0 0.0015 3.2E-08 61.8 6.2 49 681-730 1-49 (143)
183 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0022 4.8E-08 57.1 7.0 49 681-730 1-49 (111)
184 cd04589 CBS_pair_CAP-ED_DUF294 97.0 0.0027 5.8E-08 56.7 7.5 48 682-730 2-49 (111)
185 TIGR03520 GldE gliding motilit 97.0 0.0014 3E-08 73.4 6.8 58 673-730 191-251 (408)
186 PRK10070 glycine betaine trans 96.9 0.0034 7.4E-08 69.9 9.4 58 674-732 338-395 (400)
187 COG4536 CorB Putative Mg2+ and 96.9 0.0015 3.2E-08 69.6 6.1 54 681-734 275-328 (423)
188 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0025 5.4E-08 56.9 7.0 47 682-729 2-48 (113)
189 cd04595 CBS_pair_DHH_polyA_Pol 96.9 0.0027 5.8E-08 56.6 7.1 48 681-729 2-49 (110)
190 TIGR01302 IMP_dehydrog inosine 96.9 0.0014 3.1E-08 74.3 6.4 58 671-728 78-138 (450)
191 PRK05567 inosine 5'-monophosph 96.9 0.0018 4E-08 74.2 7.0 55 673-727 87-141 (486)
192 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.0023 5E-08 57.8 6.4 48 682-730 2-50 (119)
193 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0032 7E-08 56.0 7.2 49 682-731 2-50 (111)
194 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.003 6.6E-08 55.6 6.5 47 682-729 2-48 (105)
195 PRK15094 magnesium/cobalt effl 96.8 0.0024 5.2E-08 68.2 6.7 58 673-730 67-127 (292)
196 cd04622 CBS_pair_9 The CBS dom 96.8 0.0034 7.3E-08 56.1 6.6 46 681-727 1-46 (113)
197 KOG2550 IMP dehydrogenase/GMP 96.7 0.0024 5.2E-08 68.5 6.1 57 673-729 171-227 (503)
198 cd04633 CBS_pair_20 The CBS do 96.7 0.0035 7.7E-08 56.8 6.6 48 682-730 2-49 (121)
199 cd04802 CBS_pair_3 The CBS dom 96.7 0.0044 9.6E-08 55.3 7.0 48 681-729 1-48 (112)
200 cd04606 CBS_pair_Mg_transporte 96.7 0.0027 5.9E-08 56.6 5.3 44 685-728 1-49 (109)
201 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0042 9.1E-08 55.9 6.5 46 682-727 3-51 (114)
202 cd04604 CBS_pair_KpsF_GutQ_ass 96.7 0.0044 9.6E-08 55.3 6.5 49 683-731 4-52 (114)
203 cd04620 CBS_pair_7 The CBS dom 96.6 0.0055 1.2E-07 55.0 6.9 48 682-730 2-50 (115)
204 cd04601 CBS_pair_IMPDH This cd 96.6 0.0043 9.3E-08 55.0 6.0 48 681-728 2-49 (110)
205 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0052 1.1E-07 54.3 6.4 44 684-728 4-47 (104)
206 PTZ00314 inosine-5'-monophosph 96.5 0.0039 8.6E-08 71.3 6.5 55 673-727 96-153 (495)
207 TIGR01303 IMP_DH_rel_1 IMP deh 96.5 0.0045 9.8E-08 70.3 6.5 55 672-727 87-141 (475)
208 PRK07107 inosine 5-monophospha 96.4 0.0044 9.5E-08 70.9 5.9 54 674-727 95-154 (502)
209 cd04638 CBS_pair_25 The CBS do 96.3 0.011 2.3E-07 52.4 6.9 46 683-728 3-48 (106)
210 cd04610 CBS_pair_ParBc_assoc T 96.3 0.0098 2.1E-07 52.5 6.4 47 681-728 2-48 (107)
211 cd04625 CBS_pair_12 The CBS do 96.3 0.012 2.6E-07 52.5 6.9 48 682-730 2-49 (112)
212 PLN02274 inosine-5'-monophosph 96.3 0.0077 1.7E-07 69.1 6.9 52 676-727 103-157 (505)
213 cd04591 CBS_pair_EriC_assoc_eu 96.2 0.0079 1.7E-07 53.5 5.4 46 684-729 5-53 (105)
214 KOG1764 5'-AMP-activated prote 96.2 0.013 2.9E-07 64.8 8.1 51 683-733 312-362 (381)
215 cd04592 CBS_pair_EriC_assoc_eu 96.1 0.017 3.6E-07 54.2 7.0 36 678-713 83-118 (133)
216 TIGR00400 mgtE Mg2+ transporte 95.9 0.014 3E-07 66.5 6.3 56 673-728 131-191 (449)
217 COG4535 CorC Putative Mg2+ and 95.3 0.039 8.4E-07 55.5 6.4 62 673-735 133-194 (293)
218 COG4109 Predicted transcriptio 95.2 0.022 4.8E-07 60.3 4.4 59 672-730 187-247 (432)
219 PRK11573 hypothetical protein; 94.6 0.075 1.6E-06 59.7 7.2 58 673-730 187-247 (413)
220 COG1253 TlyC Hemolysins and re 93.1 0.19 4.2E-06 56.8 7.0 60 673-732 206-268 (429)
221 TIGR03415 ABC_choXWV_ATP choli 93.0 0.16 3.5E-06 56.3 6.1 55 674-731 327-381 (382)
222 COG2239 MgtE Mg/Co/Ni transpor 90.6 0.36 7.9E-06 54.4 5.3 55 674-728 133-192 (451)
223 KOG1764 5'-AMP-activated prote 89.3 0.49 1.1E-05 52.5 5.1 50 682-731 238-287 (381)
224 COG4535 CorC Putative Mg2+ and 89.0 0.23 4.9E-06 50.1 1.9 62 673-734 67-131 (293)
225 COG4175 ProV ABC-type proline/ 88.5 0.77 1.7E-05 48.8 5.5 53 678-731 332-384 (386)
226 COG1125 OpuBA ABC-type proline 84.6 1.6 3.5E-05 45.2 5.2 43 686-728 266-308 (309)
227 KOG2550 IMP dehydrogenase/GMP 84.2 0.73 1.6E-05 50.1 2.7 48 681-728 116-166 (503)
228 PRK10070 glycine betaine trans 83.3 2.6 5.7E-05 47.2 6.8 58 673-730 274-334 (400)
229 TIGR01186 proV glycine betaine 79.0 5 0.00011 44.4 7.1 53 679-731 248-300 (363)
230 COG4536 CorB Putative Mg2+ and 78.9 2 4.4E-05 46.5 3.7 62 672-733 199-263 (423)
231 PF00571 CBS: CBS domain CBS d 76.2 3.7 7.9E-05 31.6 3.7 19 602-620 38-56 (57)
232 PRK09765 PTS system 2-O-a-mann 67.1 2.4E+02 0.0052 33.7 17.6 20 171-190 458-477 (631)
233 PF10518 TAT_signal: TAT (twin 56.2 8.9 0.00019 25.1 1.8 23 228-250 3-25 (26)
234 PRK02509 hypothetical protein; 51.7 4.2E+02 0.0091 33.1 15.9 20 318-337 326-345 (973)
235 cd04597 CBS_pair_DRTGG_assoc2 35.6 21 0.00046 31.8 1.6 31 584-623 58-88 (113)
236 PF01102 Glycophorin_A: Glycop 35.3 49 0.0011 30.5 3.8 17 320-336 66-82 (122)
237 PF10399 UCR_Fe-S_N: Ubiquitin 30.5 36 0.00078 25.0 1.7 20 225-244 7-28 (41)
238 TIGR02865 spore_II_E stage II 28.6 1.2E+03 0.025 28.7 21.9 82 480-565 197-288 (764)
239 KOG0236 Sulfate/bicarbonate/ox 24.8 1.9E+02 0.0042 34.7 7.5 19 229-247 362-380 (665)
240 KOG4267 Predicted membrane pro 23.6 1.1E+02 0.0025 27.4 3.9 46 475-521 28-73 (110)
241 KOG2118 Predicted membrane pro 23.4 1.2E+02 0.0027 35.0 5.3 57 672-730 272-328 (498)
242 COG4129 Predicted membrane pro 22.8 1.8E+02 0.004 31.7 6.2 48 520-567 107-158 (332)
243 PRK01844 hypothetical protein; 20.2 2.4E+02 0.0052 23.5 4.8 20 318-337 5-24 (72)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-155 Score=1242.38 Aligned_cols=664 Identities=54% Similarity=0.916 Sum_probs=609.8
Q ss_pred CCCCCCCccchhhhchHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 004538 39 GSSSVESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS--- 115 (746)
Q Consensus 39 ~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~--- 115 (746)
|+++|||||||++||+.|+|+||++++.+.++|...||.++++||+++|++|.++|..+|++.++|+..+...+.+.
T Consensus 51 k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~ 130 (762)
T KOG0474|consen 51 KVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQ 130 (762)
T ss_pred CCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999987766544
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCch
Q 004538 116 ---YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEG 192 (746)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EG 192 (746)
++.+++.|..++++++++++.++.+++|.|+||||||||+||||+++|+.+++||+++|++|+++|+++|+.+||||
T Consensus 131 ~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEG 210 (762)
T KOG0474|consen 131 KGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEG 210 (762)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHH
Q 004538 193 PLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVF 272 (746)
Q Consensus 193 P~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~ 272 (746)
||||.||+||+.++|++|.+++++|||+|+||||+||||+++||+||||||||+||+||+||++||.++||++.++||+|
T Consensus 211 PMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~f 290 (762)
T KOG0474|consen 211 PMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTF 290 (762)
T ss_pred CeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 004538 273 FTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH 352 (746)
Q Consensus 273 ~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~ 352 (746)
|++++++++++.++.+|.+|+|+.|+.+++++|++++....|+..|+++++++|++||++|++||++|....+ +++.+
T Consensus 291 Fss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~--~r~~~ 368 (762)
T KOG0474|consen 291 FSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVL--RRYNY 368 (762)
T ss_pred HHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHH--HHHhc
Confidence 9999999999999999999999999999999999997777999999999999999999999999955443333 33346
Q ss_pred ccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHH
Q 004538 353 KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDA 432 (746)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~ 432 (746)
.|.+..|++++++++++|+++.|.+|++++|+|||++..+ .+|| +|+||+|+ |||+|+++|||+||+
T Consensus 369 ~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~--~~~p----------~f~Cp~~~-YNdlAtL~fnt~dda 435 (762)
T KOG0474|consen 369 EKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITE--GQCP----------TFFCPDGE-YNDLATLFFNTNDDA 435 (762)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCccc--ccCc----------cccCCCCc-hhHHHHHHcCCcHHH
Confidence 7788899999999999999999999999999999974421 1454 48999999 999999999999999
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh
Q 004538 433 IRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAA 512 (746)
Q Consensus 433 i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaa 512 (746)
||+|||..+ ++|++.+|++|++.+++++++|||+.+|+|+|+|++++||+|||++|.++..++ ++|||.||++|||
T Consensus 436 VrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---~id~G~yAllGAA 511 (762)
T KOG0474|consen 436 VRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT---NIDPGLYALLGAA 511 (762)
T ss_pred HHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh---ccCchHHHHHhHH
Confidence 999999876 999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred hhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhhCcchhHHHHHhhCCCCCCCchhhhhccccHhhhccc
Q 004538 513 SFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA 592 (746)
Q Consensus 513 A~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~~~~iY~~~l~~~~~p~L~~~~~~~l~~l~v~dVM~~ 592 (746)
|+|||++|||+|+|||++|+| |..+++|+|++.++||||+|.||++|||.++++||+|+|+|+++++|++++|+|+|++
T Consensus 512 a~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~ 590 (762)
T KOG0474|consen 512 AFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK 590 (762)
T ss_pred HHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC
Confidence 999999999999999999999 5677888899999999999999999999999999999999999999999999999999
Q ss_pred ce-------------------------eeeccC-CCcceEEeeeeHHHHHHHHhcccccc-CCCCCCCCCCCCCCccccc
Q 004538 593 QK-------------------------VIDHSR-NGERLVIGLVLRSHLLVLLQSKVDFQ-HSPLPCDTRGGSKPISHSF 645 (746)
Q Consensus 593 ~v-------------------------Vv~~~~-~~~~~l~GlIlR~~L~~lL~~~~~~~-~~pv~~~~~~~~~~~~~~~ 645 (746)
|+ |+|++- .+..+++|+|+|+|+.++++++. |. +.|...+.. ..+++
T Consensus 591 pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~-f~~~~~~~~~~~-----~~~~~ 664 (762)
T KOG0474|consen 591 PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRV-FVEESRSTFDLP-----VRRKF 664 (762)
T ss_pred CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhh-hhccCccccCcc-----hhhcC
Confidence 88 445432 23368999999999999999987 54 444322221 01122
Q ss_pred cccccCCCCCCCccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHH
Q 004538 646 SEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 725 (746)
Q Consensus 646 ~~~~~~~~~~g~~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDL 725 (746)
.. ++...++.+++|++++++++++++|++|+||++|++|++++|+.+++.+||++|+||+.||++.++++|++||||+
T Consensus 665 ~~--~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 665 TF--RDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred CH--HHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 11 1222356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhh
Q 004538 726 LIEDG 730 (746)
Q Consensus 726 l~~~~ 730 (746)
.++..
T Consensus 743 ~~~~~ 747 (762)
T KOG0474|consen 743 ARYRI 747 (762)
T ss_pred hhHHH
Confidence 98763
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-82 Score=686.54 Aligned_cols=563 Identities=33% Similarity=0.551 Sum_probs=434.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHh-----hh-hhhhHHHHHH
Q 004538 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTF---------------------------SIIQ-----KS-YFAGFLVYIL 125 (746)
Q Consensus 79 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~---------------------------~~~~-----~~-~~~~~~~~~~ 125 (746)
.++||..+|..+.+.+...+| ++|-+.+. ..+. .+ +...|++|+.
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 478888888888888888777 22211100 0000 01 3458899999
Q ss_pred HHHHHHHHHHHHhhhccccccCCChHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHh
Q 004538 126 INLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLL 205 (746)
Q Consensus 126 ~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l 205 (746)
+++.++.++..+++.++|.|.||||||+|+.+.|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.+
T Consensus 136 ~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~ 215 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIF 215 (696)
T ss_pred HHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccccccchhhcccc-CChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 206 GQGGSTKYHLRYRWLQVF-RSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 206 ~~~~s~~~~l~~~~~~~f-~~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
++ +++.+ .|...+|+.+++++|||||++|||||||+||++|++++++..+..|+.|+|+.+|.++++.
T Consensus 216 s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 216 SK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 87 34333 3778899999999999999999999999999999999999999999999999999998886
Q ss_pred hhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHH
Q 004538 285 AMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEAC 364 (746)
Q Consensus 285 ~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (746)
. ..|+++....|.+. .+.+|++.|+++|+++|++||+.|.+|. +.+.++.|++...+...+++++++
T Consensus 285 i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~LGifgGl~G~~~i---r~n~~~~~~rK~~~lg~~pv~ev~ 351 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVD-YDRPWSLFELLPFILLGIFGGLWGAFFI---RLNIRFCRFRKSSKLGKFPVLEVV 351 (696)
T ss_pred e---------cccCCCceEEEEEe-ccCCcccccchHHHHHHHhhhHHHHHHH---HHHHHHHhccchhhccCCcchhHH
Confidence 5 46788888888887 4789999999999999999999999999 555555554422244557899999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccc
Q 004538 365 VISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHE 444 (746)
Q Consensus 365 ~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~ 444 (746)
+++++|++++|+.|+++--.. +......++|+ ...+- ++ . .+.-.
T Consensus 352 ~vt~iTaiIs~~np~~r~~~~--e~i~~Lf~~C~---------------~~~s~-~l-------~----------~~~~~ 396 (696)
T KOG0475|consen 352 FVTLVTAIISLFNPETRFNMS--ELITILFNKCS---------------PSSST-SL-------P----------ETTVY 396 (696)
T ss_pred HHHHHHHHHHhcCHHHHhhHH--HHHHHHHhhcC---------------Ccccc-cC-------c----------ccchH
Confidence 999999999999998731000 00000011121 11100 00 0 00001
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCChHHHHHHHhhhhhh
Q 004538 445 YSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYALLGAASFLG 516 (746)
Q Consensus 445 ~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~--------~~~~~p~~~AliGaaA~l~ 516 (746)
-....|+..+++|+++|++|+|+++|+|+|+||+.+||+.||++|.++..+.+ ...+.|+.||++||||.|+
T Consensus 397 ~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~Ls 476 (696)
T KOG0475|consen 397 SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLS 476 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhc
Confidence 12445677788999999999999999999999999999999999987766542 2358899999999999999
Q ss_pred ccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhh-CcchhHHHHHhhCCCCCCCchhhhhccccHhhhccc---
Q 004538 517 GSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--- 592 (746)
Q Consensus 517 g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~-~~~iY~~~l~~~~~p~L~~~~~~~l~~l~v~dVM~~--- 592 (746)
|++|+|+|++|||+|+||++.+++|+|+|+++|+||+|.+ ..+|||.+++++|+||++.+.+.. .--+.++|.+
T Consensus 477 GvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~ 554 (696)
T KOG0475|consen 477 GVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRS 554 (696)
T ss_pred CcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcC
Confidence 9999999999999999999999999999999999999999 789999999999999997654432 1122333321
Q ss_pred -----------------------------ceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccc
Q 004538 593 -----------------------------QKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISH 643 (746)
Q Consensus 593 -----------------------------~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~ 643 (746)
|+++++ +.+.++|.++|+++...+.+.......-+ + .
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---~sq~lvGfv~rr~l~~~i~~ar~~q~~~~--~---------~ 620 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE---DSQRLVGFVLRRNLFLAILNARKIQSFIV--T---------T 620 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEcc---ccceeEEEEchHHHHHHHhhhccccccce--e---------c
Confidence 223322 35677777777776544432210111000 0 0
Q ss_pred cccccccCCCCCCCccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHh
Q 004538 644 SFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRK 723 (746)
Q Consensus 644 ~~~~~~~~~~~~g~~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrk 723 (746)
+. .++++ ............+++++|+.+|++|..++|.+-+.++|+++|++++.|.++ |++.|+||+|
T Consensus 621 ~~-~f~~~----------~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~-G~l~Giitkk 688 (696)
T KOG0475|consen 621 SI-YFNDP----------SPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN-GILLGIITKK 688 (696)
T ss_pred cc-ccCCC----------CccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC-CeeEeeeehH
Confidence 00 01110 011122334568899999999999999999999999999999999988765 9999999999
Q ss_pred HHhHhhh
Q 004538 724 DLLIEDG 730 (746)
Q Consensus 724 DLl~~~~ 730 (746)
|++++.+
T Consensus 689 d~l~~~r 695 (696)
T KOG0475|consen 689 DCLRHTR 695 (696)
T ss_pred HHHHhhc
Confidence 9998754
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-82 Score=693.90 Aligned_cols=616 Identities=27% Similarity=0.488 Sum_probs=464.5
Q ss_pred HHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004538 58 EEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYI 137 (746)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 137 (746)
++|..|..+..+++..+.|++.+++|++++++++.+|.+++.+++...+...+.-+.+....|+.|+.+.+.+.++++.+
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f 157 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGF 157 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777889999999999999999999999999998877655443333334477888999999999999999
Q ss_pred hhhccccccCCChHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccch
Q 004538 138 ITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRY 217 (746)
Q Consensus 138 ~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~ 217 (746)
+++++|+|-||||||+|.++.|+..+++++.||++.|++|..+++|||+++|||||+||+++++++.+++..+ +
T Consensus 158 ~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a------~ 231 (931)
T KOG0476|consen 158 CHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTA------C 231 (931)
T ss_pred HheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHH------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987532 1
Q ss_pred hhccccCChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCcccc
Q 004538 218 RWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF 297 (746)
Q Consensus 218 ~~~~~f~~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f 297 (746)
.+-..|+|+....+++++|+|.|||+.|.||+|||||++|++++||..+++||.||++.++++++|.+..|..+..-.
T Consensus 232 ~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t-- 309 (931)
T KOG0476|consen 232 QFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT-- 309 (931)
T ss_pred hccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh--
Confidence 233567788888899999999999999999999999999999999999999999999999999999987664421110
Q ss_pred CCCceEEeecC-CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHH--hcccCchhHHHHHHHHHHHHH
Q 004538 298 GSGGFIIWDIS-DGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWR---RNY--LHKKGNRVKIIEACVISVITS 371 (746)
Q Consensus 298 ~~~~~~~f~~~-~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~l~~ 371 (746)
-. ..|+.+ ..+.+|++.|+|+|+++|++||++|++|+ ++.+++. |.. .++-...+|++.+.+++++.+
T Consensus 310 -It--A~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fV---ylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~s 383 (931)
T KOG0476|consen 310 -IT--ALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFV---YLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFS 383 (931)
T ss_pred -hH--HHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceee---eeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHh
Confidence 00 122322 13458999999999999999999999999 5444321 110 111112346888888888888
Q ss_pred HHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhc------------
Q 004538 372 VISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSA------------ 439 (746)
Q Consensus 372 ~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~------------ 439 (746)
.+.|-. -+ |.|. .|+ +. ..++++.+|++
T Consensus 384 sltfP~-Gl------------------------G~f~-----aG~-l~---------f~etl~~fF~Nctw~~~~~~~~~ 423 (931)
T KOG0476|consen 384 SLTFPP-GL------------------------GQFL-----AGR-LS---------FRETLVDFFDNCTWWVQTNDSEL 423 (931)
T ss_pred heecCC-cc------------------------cccc-----ccc-cc---------HHhHHHHHhhcCeeeecCCCcCC
Confidence 776521 11 1111 121 10 01122222221
Q ss_pred ---------cc-c-cchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCC
Q 004538 440 ---------KT-I-HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLN 500 (746)
Q Consensus 440 ---------~~-~-~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~--------~~~ 500 (746)
.. + +.-.+.+|.+|+++||++++++..+.+|+|+|+|.+++||++||++|+.+..++| ...
T Consensus 424 ~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~ 503 (931)
T KOG0476|consen 424 CPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPP 503 (931)
T ss_pred CChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCc
Confidence 01 1 1223457899999999999999999999999999999999999999988877653 235
Q ss_pred CChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhhCcchhHHHHHhhCCCCCCCchhhh
Q 004538 501 IEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYK 580 (746)
Q Consensus 501 ~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~~~~iY~~~l~~~~~p~L~~~~~~~ 580 (746)
+.||.||++|||||-|++| +|+|.+||++|+||++..++|+|||+++|++|+..+++||||..++.|++|||++.++..
T Consensus 504 I~PG~YAVVGAAAfsGaVT-HTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~ 582 (931)
T KOG0476|consen 504 IHPGGYAVVGAAAFSGAVT-HTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSR 582 (931)
T ss_pred cccchhhhhhhhhhcccee-eeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcc
Confidence 8899999999999866665 699999999999999999999999999999999999999999999999999999987654
Q ss_pred --hccccHhhhcccceee--------------ec---------cCCCcceEEeeeeHHHHHHHHhccccccCCCC-----
Q 004538 581 --MRQMTAKEACGAQKVI--------------DH---------SRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL----- 630 (746)
Q Consensus 581 --l~~l~v~dVM~~~vVv--------------~~---------~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv----- 630 (746)
.+.+.|+|+|.+|+.. .. ...+++.++|.|.|++|..+++++. .++|+
T Consensus 583 ~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i--g~~~r~~~a~ 660 (931)
T KOG0476|consen 583 SSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI--GPEPRLVEAQ 660 (931)
T ss_pred cceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc--CccHhHHHHH
Confidence 5678899999888710 00 1245688999999999999887632 11111
Q ss_pred ------------------------CCCCC--------CCC------CCcc-------ccccccc---cCCCCCC------
Q 004538 631 ------------------------PCDTR--------GGS------KPIS-------HSFSEFV---KPASSKG------ 656 (746)
Q Consensus 631 ------------------------~~~~~--------~~~------~~~~-------~~~~~~~---~~~~~~g------ 656 (746)
+...+ ..+ .+.. ...+.+. .+.+..|
T Consensus 661 ~r~r~~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~ 740 (931)
T KOG0476|consen 661 KRVRTASEIFLTIFERSKKEEPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENAL 740 (931)
T ss_pred HHhhhhhhchhhhhhhhhccCCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCcccccc
Confidence 00000 000 0000 0000000 0000000
Q ss_pred Ccc----------------------------------ccc--cCCc--------cccccccccccc-cCCCCeeecCCCC
Q 004538 657 LSI----------------------------------DDI--HLSS--------DDMEMYIDLGPF-LNPSPYVVPEDMS 691 (746)
Q Consensus 657 ~~i----------------------------------~dl--~~~~--------~~~~~~~dl~~i-m~~~p~tV~~~~s 691 (746)
.+. +|. ++.. +.....+|+++. +++.|+.+.+.+|
T Consensus 741 ~s~~~~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TS 820 (931)
T KOG0476|consen 741 LSLRDMESPLHGPAAEHHPLHKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTS 820 (931)
T ss_pred ccccccccCCCCCcccccccccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccch
Confidence 000 000 0111 122344666654 6789999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 692 LSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 692 L~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
|.+++.+|..+|++|..|++. ||++|+|+.|||.+++..
T Consensus 821 L~K~HtLFSLLgL~~AYVT~~-GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 821 LYKVHTLFSLLGLNHAYVTSC-GRLVGVVALKELRKAIEN 859 (931)
T ss_pred HHHHHHHHHHhccchhhhccc-CcEEEEEEHHHHHHHHHh
Confidence 999999999999999999998 999999999999999765
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=2.9e-78 Score=679.36 Aligned_cols=461 Identities=56% Similarity=0.959 Sum_probs=396.6
Q ss_pred CCccchhhhchHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHH
Q 004538 44 ESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLV 122 (746)
Q Consensus 44 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 122 (746)
||+||++.||+.+|++||+|++++...+.+.||++++++|+++|+++.+|+..+++++++++....+...+. ....|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 899999999999999999999999899999999999999999999999999999999999877654443333 4455667
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHH
Q 004538 123 YILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIA 202 (746)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig 202 (746)
|+.+++++++++++++.+++|+++||||||+++++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 77888888999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHhhccCccccccchhhccccCChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHH
Q 004538 203 SLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (746)
Q Consensus 203 ~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (746)
+.++|..++.+++++|+++++++++|||++++||+|||+||+|||||+|++|++||+.++|+.+..|+.+++++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998766666777788888889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHH
Q 004538 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (746)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (746)
+.+......+....|+.++.+.|+.......+++.|+++++++|++||++|.+|+++++..++++++. +.+.+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-~~~~~~~~~l~ 319 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI-NHKGKLLKVLE 319 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHH
Confidence 87765443322334554444455554334568899999999999999999999995444443333321 11234457777
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccc
Q 004538 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (746)
Q Consensus 363 ~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (746)
+++++++++.+.+
T Consensus 320 ~~lv~~~~~~~~~------------------------------------------------------------------- 332 (466)
T cd03685 320 ALLVSLVTSVVAF------------------------------------------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 7777766654321
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccch
Q 004538 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (746)
Q Consensus 443 ~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~p 522 (746)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+.+....+|+.||++||||+++|++|+|
T Consensus 333 ----~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raP 408 (466)
T cd03685 333 ----PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMT 408 (466)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhh
Confidence 1234556678999999999999999999999999999999999999887665678999999999999999999999
Q ss_pred hhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhhCcchhHHHHHhhCCCCCCCc
Q 004538 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESR 576 (746)
Q Consensus 523 is~~vi~~ElTg~~~~l~pimia~~va~~v~~~~~~~iY~~~l~~~~~p~L~~~ 576 (746)
+|+++|++|+||++++++|+|+++++|+++++.+++|+||.+++.||+|||+..
T Consensus 409 lt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 409 VSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999864
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.7e-72 Score=652.75 Aligned_cols=541 Identities=18% Similarity=0.271 Sum_probs=418.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh-HHH
Q 004538 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE-IKG 155 (746)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe-v~~ 155 (746)
++++++|+++|+++.+|+..++++++++|....+........+|++.+.++++.+++++++..+..+..+++|+++ +++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~ 105 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEA 105 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHH
Confidence 3789999999999999999999999998753221111111123333344555556677777666666666555555 556
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHH
Q 004538 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (746)
Q Consensus 156 ~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~ 235 (746)
+.++ .+.+++|+.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++|
T Consensus 106 ~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~ 169 (574)
T PRK01862 106 VALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVAC 169 (574)
T ss_pred HHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHH
Confidence 6654 355778999999999999999999999999999999999999987 4443 56788999999
Q ss_pred hhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcch
Q 004538 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYS 315 (746)
Q Consensus 236 GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~ 315 (746)
|+|||+||+||||++|++|++|++.+.|+.+.++++++++.+++++.+.+. +.++ .|+++ ....++
T Consensus 170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~-~~~~~~ 235 (574)
T PRK01862 170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFA-----------GYQP--PYEMP-VFPAVT 235 (574)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeeCC-CcCcCC
Confidence 999999999999999999999999888988999999999988888877642 3333 45555 245678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCC
Q 004538 316 FEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGI 395 (746)
Q Consensus 316 ~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~ 395 (746)
..++++++++|++||++|++|+ +.+.+..+++.+.+ .++++...+.+++++++.++.|.+
T Consensus 236 ~~~~~~~~~lGv~~G~~~~~f~---~~~~~~~~~~~~~~--~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 236 GWEVLLFVALGVLCGAAAPQFL---RLLDASKNQFKRLP--VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8999999999999999999999 55555555442222 223445566777888887777755
Q ss_pred CCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccch
Q 004538 396 ECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFV 475 (746)
Q Consensus 396 ~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~ 475 (746)
. |.||+ .++++++. ...+..++.+++.|+++|++|+|+|+|||+|+
T Consensus 296 -----~-------------g~G~~------------~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~ 341 (574)
T PRK01862 296 -----W-------------GNGYS------------VVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFT 341 (574)
T ss_pred -----h-------------cCCHH------------HHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchh
Confidence 1 22243 34555542 34566677788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhh
Q 004538 476 PGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDA 555 (746)
Q Consensus 476 Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~ 555 (746)
|++++||++|+++|.+++.+.|....+|+.|+++||||+++|++|+|++++++++|+|++++.++|+|+++++|+++++.
T Consensus 342 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 342 PTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887655556788999999999999999999999999999999999999999999999999999
Q ss_pred h-CcchhHHHHHhhCCCCCCCchhhhhccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCC
Q 004538 556 F-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 634 (746)
Q Consensus 556 ~-~~~iY~~~l~~~~~p~L~~~~~~~l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~ 634 (746)
+ ++|+||.+++.++. +.+.+.+++++++|+|+++.. .+.++..+ +|+.+.++++. ...
T Consensus 422 ~~~~~iy~~~~~~~~~----~~~~~~L~~~~V~dim~~~~~---~v~~~~tl------~ea~~~l~~~~-~~~------- 480 (574)
T PRK01862 422 LGTTSMYEITLRRHQD----EAERERLRTTQMRELIQPAQT---VVPPTASV------ADMTRVFLEYP-VKY------- 480 (574)
T ss_pred hCCCChHHHHHHhccc----cchhhHHhhCcHHHHhcCCCc---eeCCCCCH------HHHHHHHHhCC-Cce-------
Confidence 8 89999999998764 345667899999999998765 22233333 56666665543 222
Q ss_pred CCCCCCccccccccccCCCCCCC-ccccccC--CccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeC
Q 004538 635 RGGSKPISHSFSEFVKPASSKGL-SIDDIHL--SSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 711 (746)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~g~-~i~dl~~--~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd 711 (746)
+.+.|++++..|. +.+|+.. .+++.....+++++|++++.++++|++++++.++|.+.+.+++||+|
T Consensus 481 ----------~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 481 ----------LYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred ----------EEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 2334444455555 5555532 11111223468899999999999999999999999999999999998
Q ss_pred CC--CeEEEEEeHhHHhHhhhcC
Q 004538 712 RA--SRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 712 ~~--gklvGIITrkDLl~~~~~~ 732 (746)
++ +|++|+||++|+++++.+.
T Consensus 551 ~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 551 SEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred CCCCCeEEEEEEHHHHHHHHHhh
Confidence 76 5899999999999987653
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=6.3e-69 Score=601.08 Aligned_cols=412 Identities=39% Similarity=0.702 Sum_probs=344.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhccccc
Q 004538 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (746)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (746)
|+++|+++..++..++|+..++.... +|+.|+.+++++++++++++++++|.++||||||+|+++||.+.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 70 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII 70 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc
Confidence 78999999999999999987775431 45667778888899999999999999999999999999999878
Q ss_pred ccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccC-ChhhhhhHHHHhhhhhh
Q 004538 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFR-SDRDRRDLVTCGCAAGV 241 (746)
Q Consensus 163 ~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~-~~~~~r~lv~~GaAAgv 241 (746)
++.+++|+++.|++++++++++|+|+|||||++|+||++|+.++| |++.++ +++|||++++||+|||+
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGl 139 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGV 139 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999987 444333 78899999999999999
Q ss_pred hhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHH
Q 004538 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (746)
Q Consensus 242 aaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (746)
||+||||++|++|++||+.++|+.+.+|++++++++++++.+.+.. ++.++...|+++. ..+++..|+++
T Consensus 140 aAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~---------~~~~~~~~f~~~~-~~~~~~~~l~~ 209 (445)
T cd03684 140 AVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNP---------FGTGRLVLFEVEY-DRDWHYFELIP 209 (445)
T ss_pred HHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcc---------cCCCCceEEeccC-CCCccHHHHHH
Confidence 9999999999999999999999999999999999999988876532 3334445566542 45678899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004538 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (746)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (746)
++++|+++|++|.+|+ +.+.++.+++.+.+.+.++++++++++++++++.++.|+...
T Consensus 210 ~i~lGi~~Gl~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~~------------------- 267 (445)
T cd03684 210 FILLGIFGGLYGAFFI---KANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTRL------------------- 267 (445)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHcc-------------------
Confidence 9999999999999999 555555444422221234678888999999999998887621
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHHhhc---------------c-cccc-hhHHHHHHHHHHHHHHHHHH
Q 004538 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSA---------------K-TIHE-YSAQSLLTFLVMFYTLAVVT 464 (746)
Q Consensus 402 g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~---------------~-~~~~-~~~~~L~~~~~~k~~~t~~t 464 (746)
+|+ +.++.+|+. . .+.. .....+++++++|+++|++|
T Consensus 268 ------------~g~--------------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt 321 (445)
T cd03684 268 ------------DMT--------------ELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFT 321 (445)
T ss_pred ------------chh--------------hHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 010 011111110 0 0111 23456777889999999999
Q ss_pred hccccCcccchhHHHHHHHHHHHHHHHHHHhh---hc-----------CCCChHHHHHHHhhhhhhccccchhhhhhHHH
Q 004538 465 FGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFY---KK-----------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMV 530 (746)
Q Consensus 465 ~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~---~~-----------~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ 530 (746)
+|+|+|||+|+|++++||++|+++|.+++.+. |+ ..++|+.||++||||+++|++|+|+|+++|++
T Consensus 322 ~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ 401 (445)
T cd03684 322 FGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMF 401 (445)
T ss_pred HcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheee
Confidence 99999999999999999999999999998653 21 24789999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHHHHHHHhhh-CcchhHHHHHhhCCCCC
Q 004538 531 EITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLL 573 (746)
Q Consensus 531 ElTg~~~~l~pimia~~va~~v~~~~-~~~iY~~~l~~~~~p~L 573 (746)
|+||++++++|+|+++++|+++++.+ .+|+||.+++.|++|||
T Consensus 402 ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 402 ELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred eccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999999999999999999999 58999999999999996
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3.3e-67 Score=584.73 Aligned_cols=413 Identities=31% Similarity=0.578 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHH
Q 004538 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (746)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (746)
|++.+++|+++|+++.+++..++++++++..... ..+++.+..++.|+.+++++++++++++.+++|+++||||||+++
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 80 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYS-LLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKT 80 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH
Confidence 8889999999999999999999999988865532 233345556777788888888899999999999999999999999
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhcc-ccCChhhhhhHHH
Q 004538 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ-VFRSDRDRRDLVT 234 (746)
Q Consensus 156 ~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~-~f~~~~~~r~lv~ 234 (746)
+++|.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|+.++|.. +. .+ .++++.+||++++
T Consensus 81 ~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~----~~~~~~~~~~rr~Li~ 152 (426)
T cd03683 81 ILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TF----FSGIYENESRRMEMLA 152 (426)
T ss_pred HHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----cc----ccccccCHHHHHHHHH
Confidence 999988899999999999999999999999999999999999999999999732 11 01 1457888999999
Q ss_pred HhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCce-EEeecC-CCCC
Q 004538 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGF-IIWDIS-DGQE 312 (746)
Q Consensus 235 ~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~-~~f~~~-~~~~ 312 (746)
||+|||+||+||||++|++|++||+.++|+.+..|+++++|++++++.+.+.++... .... -.|... ....
T Consensus 153 ~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 225 (426)
T cd03683 153 AACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSD-------QETITALFKTTFFVDF 225 (426)
T ss_pred hHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CccccccccccccCCC
Confidence 999999999999999999999999999999999999999999999988766433211 1100 001111 1234
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc--ccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCC
Q 004538 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH--KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESD 390 (746)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~ 390 (746)
+++..++++++++|+++|++|++|+++++...++++++.. +..+..+.+++++++++++++.+ |
T Consensus 226 ~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------ 291 (426)
T cd03683 226 PFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------ 291 (426)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H------------
Confidence 6788999999999999999999999555544444333211 11223467777777777654321 1
Q ss_pred CCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccC
Q 004538 391 LDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVP 470 (746)
Q Consensus 391 ~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~ 470 (746)
+..++++++.|+++|++|+|+|+|
T Consensus 292 --------------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~ 315 (426)
T cd03683 292 --------------------------------------------------------FLTLFLFIVVKFVLTALAITLPVP 315 (426)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 224566788999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhh-------cCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHH
Q 004538 471 AGQFVPGIMIGSTYGRLVGMFVVNFYK-------KLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIM 543 (746)
Q Consensus 471 gG~f~Psl~iGa~~G~l~g~~~~~~~~-------~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pim 543 (746)
||+|+|++++||++|+++|.+++.+.| ....+|+.||++||||+++|++|+|.+ ++|++|+||++++++|+|
T Consensus 316 GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~ 394 (426)
T cd03683 316 AGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVL 394 (426)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHH
Confidence 999999999999999999999988765 345789999999999999999998665 579999999999999999
Q ss_pred HHHHHHHHHHhhhCcchhHHHHHhhCCCCCCC
Q 004538 544 LVLLISKAVGDAFSEGLYEEQAHLRGVPLLES 575 (746)
Q Consensus 544 ia~~va~~v~~~~~~~iY~~~l~~~~~p~L~~ 575 (746)
+++++|+++++.+++|+||.+++.|++|||++
T Consensus 395 ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 395 IAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 99999999999998899999999999999974
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=4.7e-66 Score=574.25 Aligned_cols=407 Identities=43% Similarity=0.716 Sum_probs=337.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhccccc
Q 004538 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (746)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (746)
|+++|+++.+++..++++++++.....+. .+++...|+.|+.+++++++++++++.+++|.++||||||+|+++||.+.
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc
Confidence 67899999999999999999988775442 33345566778888889999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhhh
Q 004538 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (746)
Q Consensus 163 ~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgva 242 (746)
++++++|+++.|++++++++++|+|+|||||++|+||++|++++|..+..++...++++++++++|||++++||+|||+|
T Consensus 80 ~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGla 159 (416)
T cd01036 80 PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVA 159 (416)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999854433333335666778899999999999999999
Q ss_pred hhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCC-ceEEeecCCCCCcchhhhHHH
Q 004538 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSG-GFIIWDISDGQEDYSFEELLP 321 (746)
Q Consensus 243 aaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~-~~~~f~~~~~~~~~~~~~l~~ 321 (746)
|+||||++|++|++||+.++|+.+.+|+.++++.+++++.+.+.++........+..+ ....++++ ...+++..|+++
T Consensus 160 AaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 238 (416)
T cd01036 160 SAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIP 238 (416)
T ss_pred hccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998876543221100000000 00122232 245678899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004538 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (746)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (746)
++++|++||++|.+|++.++...+++++..+.+.+++|++++++++++++++.+
T Consensus 239 ~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------- 292 (416)
T cd01036 239 TVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY-------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999955544444433322222345678888888887766432
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHH
Q 004538 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (746)
Q Consensus 402 g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iG 481 (746)
+..++++++.|+++|++|+|+|+|||+|+|++++|
T Consensus 293 ---------------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iG 327 (416)
T cd01036 293 ---------------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIG 327 (416)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 12345677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc--------CCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHH
Q 004538 482 STYGRLVGMFVVNFYKK--------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (746)
Q Consensus 482 a~~G~l~g~~~~~~~~~--------~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~ 553 (746)
|++|+++|.+++.+.|. ..++|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|++++
T Consensus 328 A~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~ 407 (416)
T cd01036 328 AAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVA 407 (416)
T ss_pred HHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHH
Confidence 99999999999887653 2489999999999999999999999999999999999999999999999999999
Q ss_pred hhhCcchhH
Q 004538 554 DAFSEGLYE 562 (746)
Q Consensus 554 ~~~~~~iY~ 562 (746)
+.+++|+||
T Consensus 408 ~~~~~siY~ 416 (416)
T cd01036 408 DAFCESLYH 416 (416)
T ss_pred HhhCCCCCC
Confidence 999999997
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.1e-59 Score=519.36 Aligned_cols=401 Identities=29% Similarity=0.498 Sum_probs=332.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhcccc
Q 004538 82 IGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (746)
Q Consensus 82 iGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (746)
+|+++|+++.+|+..+++++++++....... ..+..++.++..+.++++++++++.++.|+++|+|+||+++.+++..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~ 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA--NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC
Confidence 5899999999999999999999887533211 22233444556677778888888888899999999999999999854
Q ss_pred cccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhh
Q 004538 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (746)
Q Consensus 162 ~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgv 241 (746)
+..++++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. ++.++|++++||+|||+
T Consensus 79 --~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~ 143 (402)
T cd01031 79 --PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGL 143 (402)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhH
Confidence 34578999999999999999999999999999999999999987 3333 57789999999999999
Q ss_pred hhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHH
Q 004538 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (746)
Q Consensus 242 aaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (746)
+++||||++|++|++|++.++|+.+.+++.++++.+++++.+.+. ++++ .|.++ ....++..|+++
T Consensus 144 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~-----------~~~~--~~~~~-~~~~~~~~~l~~ 209 (402)
T cd01031 144 AAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFF-----------GLGP--VLSIP-PLPALPLKSYWL 209 (402)
T ss_pred HHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eEecC-CCCCCCHHHHHH
Confidence 999999999999999999998988899999999999988877542 3333 34554 245688899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004538 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (746)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (746)
++++|+++|++|++|+ +.+.+.++++.+.+ +..+.+.+.+.+++++++.++.|+. .
T Consensus 210 ~illGv~~G~~g~~f~---~~~~~~~~~~~~~~-~~~~~~~~~l~gl~~~~~~~~~p~~--------------------~ 265 (402)
T cd01031 210 LLLLGIIAGLLGYLFN---RSLLKSQDLYRKLK-KLPRELRVLLPGLLIGPLGLLLPEA--------------------L 265 (402)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc-cCChhHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 55555555442211 2224555667777888888777765 1
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHH
Q 004538 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (746)
Q Consensus 402 g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iG 481 (746)
| +| | +.++.+++ +++++..++.+++.|+++|++|+|+|+|||+|+|++++|
T Consensus 266 g-----------~G--~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iG 316 (402)
T cd01031 266 G-----------GG--H------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALG 316 (402)
T ss_pred C-----------CH--H------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 12 2 33455543 346677788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhh-Ccch
Q 004538 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGL 560 (746)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~-~~~i 560 (746)
|++|+++|++++.++|....+|+.||++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++|+
T Consensus 317 a~~G~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~si 396 (402)
T cd01031 317 ALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPI 396 (402)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999887666789999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHH
Q 004538 561 YEEQAH 566 (746)
Q Consensus 561 Y~~~l~ 566 (746)
||.++|
T Consensus 397 Y~~~l~ 402 (402)
T cd01031 397 YEALLE 402 (402)
T ss_pred hHHHhC
Confidence 999874
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.4e-58 Score=513.18 Aligned_cols=410 Identities=17% Similarity=0.267 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh-hhhhHHHHHHHHHHHHHHHHHHhhhccc--cccCCC
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTF-SIIQKS-YFAGFLVYILINLILVFSSVYIITKFAP--AAAGSG 149 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~p--~a~GsG 149 (746)
++|++++++|+++|+++.+|...+++++++.+.... +..+.. ...+| +...++++.+++++++..++.| ..+++|
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~~~g 81 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQRPHA 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 456689999999999999999999998775543211 111111 11223 3345556667777777777765 477899
Q ss_pred hHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhh
Q 004538 150 IPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDR 229 (746)
Q Consensus 150 ipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~ 229 (746)
++++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++ +++||
T Consensus 82 ~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~ 144 (418)
T PRK01610 82 PTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEW 144 (418)
T ss_pred cHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHH
Confidence 9998887765 366889999999999999999999999999999999999999997 333 56789
Q ss_pred hhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCC
Q 004538 230 RDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISD 309 (746)
Q Consensus 230 r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~ 309 (746)
|.+++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+. +..+ ..|+++
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~-----------g~~~-~~~~i~- 211 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN-----------GSDA-LLYNVQ- 211 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----------CCCC-CeeecC-
Confidence 999999999999999999999999999999888877777777777777777666532 2211 245665
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCC
Q 004538 310 GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPES 389 (746)
Q Consensus 310 ~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~ 389 (746)
....++..++++++++|+++|++|.+|+ +.+++.++++.+.+ ..+.+...+.+++++++.++.|..
T Consensus 212 ~~~~~~~~~l~~~i~lGii~Gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~lggli~g~l~~~~p~~--------- 277 (418)
T PRK01610 212 LSVTVQARDYALIISTGLLAGLCGPLLL---TLMNASHRGFVSLK--LAPPWQLALGGLIVGLLSLFTPAV--------- 277 (418)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcccc--cchhHHHHHHHHHHHHHHHHhhHH---------
Confidence 2456788999999999999999999999 66666655543222 223455677778888888777754
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 004538 390 DLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAV 469 (746)
Q Consensus 390 ~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~ 469 (746)
. |.||+. ++.+++ .+.....++++++.|+++|++|+|+|.
T Consensus 278 -----------~-------------G~G~~~------------i~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~ 317 (418)
T PRK01610 278 -----------W-------------GNGYSV------------VQSFLT----APPLLMLIAGIFLCKLLAVLASSGSGA 317 (418)
T ss_pred -----------h-------------CCcHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 222432 333333 233455666778899999999999999
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHH
Q 004538 470 PAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLIS 549 (746)
Q Consensus 470 ~gG~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va 549 (746)
|||+|.|++++||++|.++|++++.+++....+|..||++||+|++++++|+|++++++++|+||++++++|+|+++++|
T Consensus 318 ~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia 397 (418)
T PRK01610 318 PGGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIA 397 (418)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999877654455688999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-CcchhHHHHHhh
Q 004538 550 KAVGDAF-SEGLYEEQAHLR 568 (746)
Q Consensus 550 ~~v~~~~-~~~iY~~~l~~~ 568 (746)
+++++.+ ++++||.++..+
T Consensus 398 ~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 398 SVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHHhCCCCchHHHHhcc
Confidence 9999998 999999998654
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1e-57 Score=511.85 Aligned_cols=411 Identities=27% Similarity=0.495 Sum_probs=328.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHh
Q 004538 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (746)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (746)
++++++|+++|+++.+|+..+++++++++....+ .....+..|..++.++.+++.++.++++++.|.++|+|+||++++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~ 80 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGA 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Confidence 4688999999999999999999999998765332 111122333444456666677888888999999999999999999
Q ss_pred hcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHh
Q 004538 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (746)
Q Consensus 157 l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~G 236 (746)
+++.+.. ...++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||
T Consensus 81 l~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G 146 (438)
T PRK05277 81 LEGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAG 146 (438)
T ss_pred HcCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHH
Confidence 9975422 125789999999999999999999999999999999999987 3332 2567899999999
Q ss_pred hhhhhhhhhcCcchhhhhhhhhhchhh--hhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcc
Q 004538 237 CAAGVAAAFRAPVGGVLFALEEVTSWW--RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDY 314 (746)
Q Consensus 237 aAAgvaaaF~APigGvLFalE~~~~~~--~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~ 314 (746)
+|||++|+||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+. +..+ .|+++. ...+
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~-----------g~~~--~~~~~~-~~~~ 212 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN-----------GEQA--VIEVGK-FSAP 212 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc-----------CCCc--eEeccC-CCCC
Confidence 999999999999999999999987644 55667888888888888877542 2233 344442 2335
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-cCchh-HHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 004538 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGNRV-KIIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (746)
Q Consensus 315 ~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~ 392 (746)
+..++++++++|+++|++|++|+ +.+.+.++++.+. +.+++ .++.+.+++++++.+.++.|..
T Consensus 213 ~~~~l~~~i~lGi~~G~~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------ 277 (438)
T PRK05277 213 PLNTLWLFLLLGIIFGIFGVLFN---KLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------ 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh------------
Confidence 67889999999999999999999 5555555544221 22222 3345566677777777766543
Q ss_pred CCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcc
Q 004538 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (746)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG 472 (746)
. |.||+ .++++++ +++++..++.+++.|++++++|+|+|+|||
T Consensus 278 --------~-------------g~G~~------------~i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG 320 (438)
T PRK05277 278 --------V-------------GGGFN------------LIPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGG 320 (438)
T ss_pred --------c-------------CChHH------------HHHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 1 22233 3444443 245666777788999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHH
Q 004538 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (746)
Q Consensus 473 ~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v 552 (746)
+|.|++++||++|+++|.+++.++|....+|..|+++||+|+++|++|+|+|++++++|+||+++.++|+|+++++|+++
T Consensus 321 ~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v 400 (438)
T PRK05277 321 IFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLL 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888776678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-CcchhHHHHHhh
Q 004538 553 GDAF-SEGLYEEQAHLR 568 (746)
Q Consensus 553 ~~~~-~~~iY~~~l~~~ 568 (746)
++.+ ++++||.+++..
T Consensus 401 ~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 401 AQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHhCCCChHHHHHHHH
Confidence 9999 799999999864
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-55 Score=489.45 Aligned_cols=411 Identities=27% Similarity=0.440 Sum_probs=322.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHhhhccccccCCChHhH
Q 004538 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSV-YIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 75 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~p~a~GsGipev 153 (746)
.+....++|++.++.....+....+.+........ ..+....| +.+......+++++ +++.++.|+++|+|+||+
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~ 97 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS---AAQAPGPW-LLPLVPALGGLLVGALLVYKFAPEARGSGIPQA 97 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccccchhH-HHHHHHHHHHHHHHHHHHHHhCccccCCChhHH
Confidence 34467777777777777777776666554432111 11111122 22233334555555 688889999999999999
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHH
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 233 (746)
++.+++. ++.+++|..++|++++++++++|+|+|||||++|+|+++|+.+++ |++. ++.|||.++
T Consensus 98 i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll 162 (443)
T COG0038 98 IEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILL 162 (443)
T ss_pred HHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHH
Confidence 9998874 457889999999999999999999999999999999999999997 4443 578999999
Q ss_pred HHhhhhhhhhhhcCcchhhhhhhhhhchh-hhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCC
Q 004538 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSW-WRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (746)
Q Consensus 234 ~~GaAAgvaaaF~APigGvLFalE~~~~~-~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~ 312 (746)
+||+|||+||+|||||+|++|++|++... |+.+.+++.++++.++..+.+.+. +.+ ..+.+.. ..
T Consensus 163 ~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~-----------~~~--~~~~~~~-~~ 228 (443)
T COG0038 163 AAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG-----------GPH--FLLPIVT-TP 228 (443)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC-----------CCC--ceeeccc-cC
Confidence 99999999999999999999999999887 888888888888777777766532 212 2334432 45
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 004538 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (746)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~ 392 (746)
.+++++++.++++|+++|++|.+|. +.+.+.++.+ ++.+..+.+.+.+.+++++.+.++.|..
T Consensus 229 ~~~~~~~~~~~~lGii~G~~g~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~g~l~g~~~l~~P~~------------ 291 (443)
T COG0038 229 HMSLWDLLLYLVLGIIAGLFGVLLS---RLLALSRRFF--RRLPLPPLLRPALGGLLVGALGLLFPEV------------ 291 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHHhchhh------------
Confidence 6788999999999999999999999 4444443332 2223336677778888888888888765
Q ss_pred CCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcc
Q 004538 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (746)
Q Consensus 393 ~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG 472 (746)
.| .|+++++ ..++ .++.+..++.+++.|+++|.+|+|+|.|||
T Consensus 292 --------lg-----------~G~~~~~--------------~~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GG 334 (443)
T COG0038 292 --------LG-----------NGYGLIQ--------------LALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGG 334 (443)
T ss_pred --------hC-----------CCccHHH--------------HHHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 11 2442322 1222 233333367788999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHH
Q 004538 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (746)
Q Consensus 473 ~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v 552 (746)
+|.|++++||++|.++|.+++..++.....|..|+++||+|++++++|+|++++++++|+|||++.++|+|+++++|+.+
T Consensus 335 if~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~ 414 (443)
T COG0038 335 IFAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLV 414 (443)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999988765567788999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-CcchhHHHHHhhCCCC
Q 004538 553 GDAF-SEGLYEEQAHLRGVPL 572 (746)
Q Consensus 553 ~~~~-~~~iY~~~l~~~~~p~ 572 (746)
++.. +.++|+..++.++.+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (443)
T COG0038 415 SRLLGGRPIYTQLLARRGAPI 435 (443)
T ss_pred HHHhCCCcHHHHHHHhcCchh
Confidence 9988 8999999999988873
No 13
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=3.3e-55 Score=484.57 Aligned_cols=386 Identities=26% Similarity=0.407 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhccc---ccc
Q 004538 87 GLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGV---DIH 163 (746)
Q Consensus 87 Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~---~~~ 163 (746)
|+++..|+..+++++++++.... .+ +|+.++..++ .+.++.+++.++.|+++|+||||+++.+++. +.+
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~p~-~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~ 72 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH---PWLPLLLTPA-GFALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARR 72 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc---hHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHccccccccc
Confidence 56788899999999888764421 11 2333334443 3445566677799999999999999998853 345
Q ss_pred cchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhhhh
Q 004538 164 GILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAA 243 (746)
Q Consensus 164 ~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgvaa 243 (746)
+++++|+++.|++++++++++|+|+|||||++|+|+++|+.++| +++. +++++||++++||+|||+||
T Consensus 73 ~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGlaa 140 (390)
T cd01034 73 RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLAA 140 (390)
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999997 3332 23688999999999999999
Q ss_pred hhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHHHH
Q 004538 244 AFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMA 323 (746)
Q Consensus 244 aF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~~ 323 (746)
+||||++|++|++|++.++|+.+..++.+.++.+++++.+.+. +..+ .|+++. ...+++.++++++
T Consensus 141 ~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----------g~~~--~f~~~~-~~~~~~~~~~~~i 206 (390)
T cd01034 141 AFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAVL-----------GNYP--YFGVAA-VALPLGEAWLLVL 206 (390)
T ss_pred HhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--ccCCCC-CCcCCHHHHHHHH
Confidence 9999999999999999999988888888888888887776542 2222 344432 2335678899999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCC
Q 004538 324 VIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGM 403 (746)
Q Consensus 324 ~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~ 403 (746)
++|+++|++|.+|++......+..+++.+.+.+.++++.+.+.+++++++.++.|.. .
T Consensus 207 llGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~--------------------~-- 264 (390)
T cd01034 207 VCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL--------------------T-- 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc--------------------c--
Confidence 999999999999994443333332222211222234455666666766666554311 0
Q ss_pred CCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Q 004538 404 YGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGST 483 (746)
Q Consensus 404 ~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~ 483 (746)
.|.||+. ++.+++++. .. ...+++.|+++|++|+|+|+|||+|.|++++||+
T Consensus 265 ----------~G~G~~~------------i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~ 316 (390)
T cd01034 265 ----------FGTGYLQ------------ARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAG 316 (390)
T ss_pred ----------ccCcHHH------------HHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHH
Confidence 1222433 444444321 11 2245679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhh-CcchhH
Q 004538 484 YGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYE 562 (746)
Q Consensus 484 ~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~-~~~iY~ 562 (746)
+|++++.+++ ..+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||
T Consensus 317 ~G~~~~~~~~------~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 317 LGSLLAALLG------SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHhc------CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998864 258999999999999999999999999999999999999999999999999999998 889996
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.2e-55 Score=482.40 Aligned_cols=349 Identities=35% Similarity=0.588 Sum_probs=274.6
Q ss_pred HHHHHHHHhhhccccccCCChHhHHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccC
Q 004538 130 LVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGG 209 (746)
Q Consensus 130 ~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~ 209 (746)
+++++++++.++.|+++|+||||+++.+++.+ +.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 45677889999999999999999999999854 34899999999999999999999999999999999999999987
Q ss_pred ccccccchhhccccCChhh-hhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 004538 210 STKYHLRYRWLQVFRSDRD-RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGW 288 (746)
Q Consensus 210 s~~~~l~~~~~~~f~~~~~-~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~ 288 (746)
+++. ++++ +|.+++||+|||+||+||||++|++|++|++.++++.+.+++.++++.+++++++.+.+.
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~ 146 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFGN 146 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHTS
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcCc
Confidence 3333 3344 777999999999999999999999999999999999999999999999999999876432
Q ss_pred hcCCCccccCCCceEEee-cCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 004538 289 CKSGKCGHFGSGGFIIWD-ISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVIS 367 (746)
Q Consensus 289 ~~~~~~~~f~~~~~~~f~-~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (746)
.+ .|+ ++. ...+++.++++++++|++||++|++|+++++..++..+++. +.+.++.+++.+.+
T Consensus 147 -----------~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~--~~~~~~~l~~~i~g 210 (355)
T PF00654_consen 147 -----------HP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK--RLKIPPILRPVIGG 210 (355)
T ss_dssp -----------S---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred -----------Cc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHH
Confidence 22 244 442 34789999999999999999999999955544444433321 23334566889999
Q ss_pred HHHHHHHhcccc--cccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccch
Q 004538 368 VITSVISFGLPL--LRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEY 445 (746)
Q Consensus 368 ~l~~~~~~~~p~--~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~ 445 (746)
++++++.++.|+ . . |.+|+. ++.+++++ +..+
T Consensus 211 l~~g~l~~~~p~~~~--------------------~-------------g~G~~~------------i~~ll~~~-~~~~ 244 (355)
T PF00654_consen 211 LVIGLLAFFFPEGSV--------------------L-------------GSGYEL------------IQSLLSGS-PPWF 244 (355)
T ss_dssp HHHHHHHHSSGG-SG--------------------S-------------SSSTTH------------HHHHCTT-----S
T ss_pred HHHHHHHHHHhhhcc--------------------c-------------CCcHHH------------HHHHHcCC-cchh
Confidence 999999998886 4 1 122333 55565432 2247
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHhhhhhhccccchhh
Q 004538 446 SAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKL-NIEEGTYALLGAASFLGGSMRMTVS 524 (746)
Q Consensus 446 ~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~~~-~~~p~~~AliGaaA~l~g~~r~pis 524 (746)
++..++.+++.|++++++|+++|+|||+|+|++++||++|+++|.+++..+|+. ..+|+.|+++||+|++++++|+|++
T Consensus 245 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt 324 (355)
T PF00654_consen 245 SLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLT 324 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHH
Confidence 788899999999999999999999999999999999999999999999986532 3489999999999999999999999
Q ss_pred hhhHHHhhcCCcchHHHHHHHHHHHHHHHhh
Q 004538 525 LCVIMVEITNNLKFLPLIMLVLLISKAVGDA 555 (746)
Q Consensus 525 ~~vi~~ElTg~~~~l~pimia~~va~~v~~~ 555 (746)
++++++|+|||+++++|+|+++++|+.++++
T Consensus 325 ~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 325 AIVLVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999873
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=4.6e-55 Score=481.97 Aligned_cols=385 Identities=23% Similarity=0.305 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhcccc
Q 004538 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (746)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (746)
|+++|+.+..|+..+++++++.+........+. ...++++....+.+.+++++++..++ + ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~-~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLL-R-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHH-h-ccCCCcccHHHHhcCC-
Confidence 688999999999999999999876422111111 11122222334445555665553333 3 3699999999999873
Q ss_pred cccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhh
Q 004538 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (746)
Q Consensus 162 ~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgv 241 (746)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|+++++ +++. ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999987 4443 67899999999999999
Q ss_pred hhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHH
Q 004538 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (746)
Q Consensus 242 aaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~ 321 (746)
||+||||++|++|++|++.++|+.+.+++.++++.+++++.+.+. ++.+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLLK-----------GDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhC-----------CCCc--eeecCC--CCCCHHHHHH
Confidence 999999999999999999999998888888888888888877642 3333 455542 3345778999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004538 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (746)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~ 401 (746)
++++|+++|++|.+|+ +.+++.++++.+.+ +..+.+.+.+++++++.++.|.. .
T Consensus 208 ~illGi~~Gl~~~lf~---~~~~~~~~~~~~~~---~~~~~~~l~gl~~g~~~~~~p~~--------------------~ 261 (388)
T cd01033 208 ALLAGPVLGVVAAGFR---RLSQAARAKRPKGK---RILWQMPLAFLVIGLLSIFFPQI--------------------L 261 (388)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 66666655542221 12334556667777777777765 1
Q ss_pred CCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHH
Q 004538 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (746)
Q Consensus 402 g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iG 481 (746)
| .| | +.++.+++. +++...++.+++.|+++|++|+|+|.|||+|.|++++|
T Consensus 262 G-----------~G--~------------~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iG 312 (388)
T cd01033 262 G-----------NG--R------------ALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALG 312 (388)
T ss_pred C-----------Cc--H------------HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 1 12 3 234445442 34556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcC-CcchHHHHHHHHHHHHHHHhhhC
Q 004538 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITN-NLKFLPLIMLVLLISKAVGDAFS 557 (746)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg-~~~~l~pimia~~va~~v~~~~~ 557 (746)
|++|+++|++++...| ..++..|+++||||++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.++
T Consensus 313 a~~G~~~g~~~~~~~p--~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 313 ALLGALLGIVWNALLP--PLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887654 56889999999999999999999999999999999 99999999999999999998763
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=2.2e-52 Score=462.26 Aligned_cols=383 Identities=28% Similarity=0.465 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhccccc
Q 004538 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (746)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (746)
|+++|+++.+|+..+++.++++++...+.. .....+++++...+.+.++++++++.+..| +.|+|+||+++.+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~-- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL-AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG-- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--
Confidence 688999999999999999998876532211 001223344455555666677777666666 8999999999988753
Q ss_pred ccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhhhhhh
Q 004538 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (746)
Q Consensus 163 ~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAgva 242 (746)
++.+++++++.|++++++++++|+|+|+|||++|+|+++|+++++ +++. ++.++|.+++||+|||++
T Consensus 77 ~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagla 143 (383)
T cd00400 77 GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIA 143 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999987 3332 567899999999999999
Q ss_pred hhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhhhHHHH
Q 004538 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPM 322 (746)
Q Consensus 243 aaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~ 322 (746)
|+||||++|++|++|++.++++.+.+++.++++.+++.+.+.+. +..+ .|+++. ..+++..+++++
T Consensus 144 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~~-~~~~~~~~~~~~ 209 (383)
T cd00400 144 AAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVPL-YDPLSLLELPLY 209 (383)
T ss_pred HhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCCC-CCcCCHHHHHHH
Confidence 99999999999999999999988888999999888888887643 2222 345542 467889999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCC
Q 004538 323 AVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPG 402 (746)
Q Consensus 323 ~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g 402 (746)
+++|+++|++|.+|+ +.+.+.++++.+. +.++.+++.+.+++++.+.++.|+.. |
T Consensus 210 il~Gv~~g~~g~~f~---~~~~~~~~~~~~~--~~~~~~~~~i~gll~~~~~~~~p~~~--------------------g 264 (383)
T cd00400 210 LLLGLLAGLVGVLFV---RLLYKIERLFRRL--PIPPWLRPALGGLLLGLLGLFLPQVL--------------------G 264 (383)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHH--------------------c
Confidence 999999999999999 6665655554322 23356677777888888888888661 1
Q ss_pred CCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHH
Q 004538 403 MYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGS 482 (746)
Q Consensus 403 ~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa 482 (746)
.| |+. ++..++ ++++...++.+++.|++++++|+|+|+|||+|.|++++||
T Consensus 265 -----------~G--~~~------------~~~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa 315 (383)
T cd00400 265 -----------SG--YGA------------ILLALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGA 315 (383)
T ss_pred -----------Cc--HHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 12 332 223322 3456667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHH
Q 004538 483 TYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (746)
Q Consensus 483 ~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~ 550 (746)
++|+++|++++.++|....+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 316 ~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 316 ALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999998877656789999999999999999999999999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.2e-49 Score=436.05 Aligned_cols=375 Identities=20% Similarity=0.296 Sum_probs=284.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHHhhc
Q 004538 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLN 158 (746)
Q Consensus 79 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~ 158 (746)
++++|+++|+++.+|+..+++++++++.. +|+. ..++ +.+++.+++..++.|. .|+|++|+++.++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~-----------~~~~-~~~p-~~g~~i~~l~~~~~~~-~~~g~~~v~~~~~ 67 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH-----------PWLL-PFLP-LAGLLIGYLYQKFGKN-SEKGNNLIIEEIH 67 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHH-HHHH-HHHHHHHHHHHHhCcc-cCCChHHHHHHHH
Confidence 67899999999999999999998876521 1211 1122 3455666777777655 5789999988777
Q ss_pred ccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHHHHhhh
Q 004538 159 GVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCA 238 (746)
Q Consensus 159 g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaA 238 (746)
+. .+.+++|..+.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. +++++|++++||+|
T Consensus 68 ~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~a 132 (378)
T cd03682 68 GP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIA 132 (378)
T ss_pred cc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHH
Confidence 52 346778999999999999999999999999999999999999997 3332 46688999999999
Q ss_pred hhhhhhhcCcchhhhhhhhhhc-hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCCcchhh
Q 004538 239 AGVAAAFRAPVGGVLFALEEVT-SWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFE 317 (746)
Q Consensus 239 AgvaaaF~APigGvLFalE~~~-~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~ 317 (746)
||++|+||||++|++|++|++. +.++.+.+++.++++.+++.+.+.+. .++ ..|.++ ...++++.
T Consensus 133 Aglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~------------~~~-~~~~~~-~~~~~~~~ 198 (378)
T cd03682 133 AGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG------------LEH-THYHIV-FIPTLDPL 198 (378)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC------------CCC-CccccC-CCCCCCHH
Confidence 9999999999999999999985 55556666777777777666655421 111 123443 23567889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 004538 318 ELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIEC 397 (746)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~c~~~~~~~~~~~~~~ 397 (746)
++++++++|+++|++|.+|+ +.+++.++++.+.+ ..+++.+.+.+++++++.++.+.-
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~iggl~~g~~~~~~~~~----------------- 256 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFA---ELLHFLKKLLKKRI--KNPYLRPFVGGLLIILLVYLLGSR----------------- 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 99999999999999999999 44444444432221 123445566666776666543311
Q ss_pred CCCCCCCCccccccccCCcccchhhhhhccCcHHHHHH-HhhcccccchhHHHHHHHHHHHHHHHHHHhccccCcccchh
Q 004538 398 PRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRN-LFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVP 476 (746)
Q Consensus 398 p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~-l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~P 476 (746)
+ . .|.+|+.+ +. +++. +.+ ...++.|+++|++|+|+|+|||+|.|
T Consensus 257 -~---~----------~G~g~~~i------------~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P 302 (378)
T cd03682 257 -R---Y----------LGLGTPLI------------EDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTP 302 (378)
T ss_pred -c---c----------ccCCHHHH------------HHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceech
Confidence 0 0 13334432 22 2221 222 12357999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccchhhhhhHHHhhcCCcchHHHHHHHHHHHHHHHhhh
Q 004538 477 GIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF 556 (746)
Q Consensus 477 sl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~va~~v~~~~ 556 (746)
++++||++|+++|+++ ..++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++
T Consensus 303 ~l~iGa~~G~~~~~~~-------~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~-- 372 (378)
T cd03682 303 LFFIGATLGNALAPIL-------GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG-- 372 (378)
T ss_pred HHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--
Confidence 9999999999999986 45788999999999999999999999999999999 5778899999999999998
Q ss_pred CcchhH
Q 004538 557 SEGLYE 562 (746)
Q Consensus 557 ~~~iY~ 562 (746)
++|||+
T Consensus 373 ~~~iy~ 378 (378)
T cd03682 373 HTGIYG 378 (378)
T ss_pred CCCCCC
Confidence 889985
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=5.1e-46 Score=410.58 Aligned_cols=384 Identities=16% Similarity=0.209 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..++.++++|+++|+++.+|...+++++++.|....+........+| +.+.++.+.++++++++++ .|...|+ .|+
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~~ 86 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DPA 86 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hHH
Confidence 445679999999999999999999999999988653211111111122 2234455667777877655 4765555 466
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhH
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 232 (746)
++...++ .++.+.+..|++++++++++|+|+|||||++|+||+++++++| +++ ++.++|++
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l 147 (414)
T PRK03655 87 TEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDW 147 (414)
T ss_pred HHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHH
Confidence 6665432 3556888999999999999999999999999999999999997 221 23456788
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCccccCCCceEEeecCCCCC
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~ 312 (746)
+.||+|||+||+||||++|++|++||+.+.+.... |...+.+.+++.+....... .+ ++.+.++++. ..
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~~-~~ 216 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIAH-YG 216 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecCC-CC
Confidence 99999999999999999999999999987665422 33334434333332222211 11 1222334432 34
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHhcc-cccccCCCCCCCCC
Q 004538 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGL-PLLRKCSPCPESDL 391 (746)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~~c~~~~~~~~ 391 (746)
..+..++++++++|++||++|.+|+ +...+.++++.+.+.+. ....+.+++++.+.++. |..
T Consensus 217 ~~~~~~~~~~l~lgi~~gl~G~lf~---~~~~~~~~~~~~~~~p~---~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 217 QMEMTDILSGAIVAAIAIAAGMVAV---WCLPRLHALMHRLKNPV---LVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHhCCcc-----------
Confidence 4667889999999999999999999 66666665553333332 33455666666666543 221
Q ss_pred CCCCCCCCCCCCCCccccccccCCcccchhhhhhccCcHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhccccCc
Q 004538 392 DSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPA 471 (746)
Q Consensus 392 ~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g~~g 471 (746)
.|.||+. ++.+.+. +++++..++++.+.|+++|++|+|+|+||
T Consensus 280 ----------------------~g~Gy~~------------i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~G 322 (414)
T PRK03655 280 ----------------------LFKGLDE------------MQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRG 322 (414)
T ss_pred ----------------------ccCCHHH------------HHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 1233543 4444332 34667778888999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhcccc----chhhhhhHHHhhcCCcchHHHHHHHHH
Q 004538 472 GQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMR----MTVSLCVIMVEITNNLKFLPLIMLVLL 547 (746)
Q Consensus 472 G~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r----~pis~~vi~~ElTg~~~~l~pimia~~ 547 (746)
|+|+|++++||++|..++.+++ ..++...+++||+|+++|++| +|+|+.||++||| +.|+|++++
T Consensus 323 GiF~PsL~iGA~~G~~~~~l~p------~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~ 391 (414)
T PRK03655 323 GRIFPAVFVGVALGLMLHAHVP------AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVM 391 (414)
T ss_pred ceehHHHHHHHHHHHHHHHhcc------CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHH
Confidence 9999999999999999998853 467888999999999999999 6999999999999 677787777
Q ss_pred HHHHHHh
Q 004538 548 ISKAVGD 554 (746)
Q Consensus 548 va~~v~~ 554 (746)
++-|+--
T Consensus 392 ~~~~~~~ 398 (414)
T PRK03655 392 LPAWLLL 398 (414)
T ss_pred HHHHHHH
Confidence 7777653
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.70 E-value=4.7e-16 Score=172.56 Aligned_cols=184 Identities=20% Similarity=0.197 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..|...+++|+++|+++.+|+..+.+.++++.+..... ....+++ . ..+.+++.+.+..+..|...|+|.++
T Consensus 199 ~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~gl~~~~~~~~~~~~~~G~G~~~ 271 (390)
T cd01034 199 GEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRF---RRRRPVL-F---AALCGLALALIGLVSGGLTFGTGYLQ 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchhhHH-H---HHHHHHHHHHHHHhCCCccccCcHHH
Confidence 334568999999999999999999988877653321100 0111111 1 11222233333333445778999999
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhH
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 232 (746)
++..+++.. .+++..++.|++.+++|+++|.++|+|+|++++||++|+.+++ +++ ..+.+.+
T Consensus 272 i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~ 333 (390)
T cd01034 272 ARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGAL 333 (390)
T ss_pred HHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHH
Confidence 999887632 3456778999999999999999999999999999999999987 222 2467899
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
+.|||||++|+++|+|+++++|++|++.+ .+.+.+.++++.+|..+.+.
T Consensus 334 a~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 334 VLLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 34556666666666666554
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.70 E-value=2e-16 Score=175.06 Aligned_cols=184 Identities=20% Similarity=0.180 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..+.+.+++|+++|+++.+|+..+.++++++. ... .+++.. .+.+++.+. +.++.|+..|+|.+.+
T Consensus 203 ~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~--~~~~~~---~l~gl~~g~-~~~~~p~~~G~G~~~i 268 (388)
T cd01033 203 PLLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGK--RILWQM---PLAFLVIGL-LSIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccc--chHHHH---HHHHHHHHH-HHHHHHHHhCCcHHHH
Confidence 34557899999999999999999888776431 111 111111 122333333 3456799999999988
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHH
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 233 (746)
+..+++..... .-+..++.|++.+.+|+++|.++|.|+|++.+||++|+.+++. ++.+.++.+.+.++
T Consensus 269 ~~~~~~~~~~~-~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTLS-LLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV-----------WNALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH-----------HHHhCCcccHHHHH
Confidence 88887632222 2367789999999999999999999999999999999999972 22111344567899
Q ss_pred HHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 004538 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (746)
Q Consensus 234 ~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (746)
.|||||++|+++||||++++|++|++.. +.+.+.+.++++++|+.+.+.+
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999762 2566777888888888777654
No 21
>PRK05277 chloride channel protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=169.84 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..+...+++|+++|+++.+|+..+.+++++..+. .+++...++ ....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 215 ~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 215 NTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----HGGNKKRWV---LMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccccHHHH---HHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 3455788999999999999999998887654221 111111111 1222333444443 456799999999999
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHH
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 233 (746)
+..+++. .+-...+..++.|++.+.+|+++|.++|.|+|++++||++|..+++..+. +++. .+.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAA-------LFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HcCc--ccccHHHHH
Confidence 9988862 22222345679999999999999999999999999999999998863211 2211 234567899
Q ss_pred HHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 234 ~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
.+||||++|+++|+|+++++|++|++.+ .+.+.+.++++.+|..+.+.
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~~ 403 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQF 403 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 34555666666666666554
No 22
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.59 E-value=1.1e-14 Score=161.69 Aligned_cols=178 Identities=21% Similarity=0.217 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..+...+++|+++|+++.+|+....++++++... . .+..+.. ++.+++.+. +.++.|+..|+|.++
T Consensus 203 ~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~----~~~~~~~---~i~gll~~~-~~~~~p~~~g~G~~~ 269 (383)
T cd00400 203 LLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P----IPPWLRP---ALGGLLLGL-LGLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C----CcHHHHH---HHHHHHHHH-HHHHHHHHHcCcHHH
Confidence 44556889999999999999999999887654321 0 1111222 223334444 355679999999999
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhH
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 232 (746)
+...+++.. +-......++.|++.+.+++++|.++|.|+|++.+||++|..+++.. +. ++. .++.+.+.+
T Consensus 270 ~~~~~~~~~-~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~----~~---~~~--~~~~~~~~~ 339 (383)
T cd00400 270 ILLALAGEL-SLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLL----PA---LFP--GLVASPGAY 339 (383)
T ss_pred HHHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----HH---hCC--cccCChHHH
Confidence 888877522 21223457899999999999999999999999999999999999831 11 111 134568899
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHH
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSA 276 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~ 276 (746)
+.||+||++++++|+|+++++|++|++.+ .+...+.++++.
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~---~~~l~p~~ia~~ 380 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGD---YSLLLPLMLAVV 380 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 99999999999999999999999999874 334444444433
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.57 E-value=2.4e-14 Score=166.85 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHH
Q 004538 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (746)
Q Consensus 75 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (746)
.+.+.+++|+++|+++.+|+..+.+.++++... . .+..+... +.+++.+. +.++.|+..|+|.+.++
T Consensus 238 ~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--------~-~~~~~~~~---~~gl~~g~-l~~~~p~~~g~G~~~i~ 304 (574)
T PRK01862 238 EVLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--------P-VPLPVRLA---LGGLLVGV-ISVWVPEVWGNGYSVVN 304 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-CchhHHHH---HHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 345678999999999999999988876543211 1 11112221 22333333 34557999999999999
Q ss_pred HhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCCh-hhhhhHH
Q 004538 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSD-RDRRDLV 233 (746)
Q Consensus 155 ~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~-~~~r~lv 233 (746)
..+++.. .-..-...++.|++.+.+|+++|.++|.++|++.+||++|+.+++.. +. ++.+. .+.-.++
T Consensus 305 ~~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~----~~------~~~~~~~~~~~~a 373 (574)
T PRK01862 305 TILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAM----HA------LWPGHTSAPFAYA 373 (574)
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHH----HH------hCCCcccchHHHH
Confidence 8887622 11122445689999999999999999999999999999999999731 10 11111 2233488
Q ss_pred HHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 234 ~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
.+||||.+|+++|||+++++|++|++.+ .....+.++++++|+.+.+.
T Consensus 374 ~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 374 MVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999855 45666777777777766654
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.55 E-value=6.3e-14 Score=156.32 Aligned_cols=184 Identities=20% Similarity=0.223 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..+.+.+++|+++|+++.+|...+.+.+++.... ...++ +.. .+.+++.+.+. ++.|+..|+|.+.+
T Consensus 219 ~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~~~~-~~~---~lggli~g~l~-~~~p~~~G~G~~~i 285 (418)
T PRK01610 219 RDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KLAPP-WQL---ALGGLIVGLLS-LFTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------ccchh-HHH---HHHHHHHHHHH-HHhhHHhCCcHHHH
Confidence 3455789999999999999999888776543211 11111 111 23344444443 34499999999988
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhh-hhhH
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRD-RRDL 232 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~-~r~l 232 (746)
+..+++.. .-.+-.-.++.|++.+.+|+++|.++|.++|++.+||++|+.+++.. + ..+.+..+ .-.+
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~----~------~~~~~~~~~~~~~ 354 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSL----G------LWLPDGEEITLLL 354 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----H------HhCCCcccchHHH
Confidence 88877521 11111223689999999999999999999999999999999999831 1 11112222 3456
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
..+||||.+++++|||++++++++|++.+ .+...+.++++.+++.+.+.
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~---~~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGE---YQLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999765 23455666777777776654
No 25
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.49 E-value=4.1e-13 Score=149.81 Aligned_cols=187 Identities=21% Similarity=0.214 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..+...+++|+++|+++.+|...++++++++.+.. .. ..++ ... +.+++.+.+ .++.|+..|+|.+.
T Consensus 204 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~~---~~~~-~~~---l~gl~~~~~-~~~~p~~~g~G~~~ 271 (402)
T cd01031 204 LKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----KL---PREL-RVL---LPGLLIGPL-GLLLPEALGGGHGL 271 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC---ChhH-HHH---HHHHHHHHH-HHHHHHHhCCHHHH
Confidence 344557899999999999999999888876543210 11 1111 111 223333333 33479999999877
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhH
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 232 (746)
++...++. .+-..-...++.|++.+.+++++|.++|.+.|++.+||++|..+++.... +++ .+..+...+
T Consensus 272 i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~~--~~~~~~~~~ 341 (402)
T cd01031 272 ILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQ-------LGP--IPISAPATF 341 (402)
T ss_pred HHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-------hcC--cccccHHHH
Confidence 77777652 22222234578999999999999999999999999999999999973211 111 124567889
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
+.+||||.+++++|+|++++++++|.+.+ .+.+.+.++++++|..+.+.
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~---~~~l~p~~ia~~ia~~v~~~ 390 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN---FNLLLPLMVVCLVAYLVADL 390 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 35566666666666666543
No 26
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.48 E-value=9e-13 Score=145.70 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhc-cccccCCChH
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKF-APAAAGSGIP 151 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~p~a~GsGip 151 (746)
+..+.+.+++|+++|+++.+|+..+.++++++.+. ....++ .+ .+.+++.+.+..+. .|...|.|.+
T Consensus 197 ~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--------~~~~~~-~~---~iggl~~g~~~~~~~~~~~~G~g~~ 264 (378)
T cd03682 197 PLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--------IKNPYL-RP---FVGGLLIILLVYLLGSRRYLGLGTP 264 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCcHH-HH---HHHHHHHHHHHHHhcCCccccCCHH
Confidence 33445788999999999999999999887765321 111122 22 22233333333322 3556799988
Q ss_pred hHHH-hhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhh
Q 004538 152 EIKG-YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (746)
Q Consensus 152 ev~~-~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r 230 (746)
+++. ..++ ..+...++.|++.+.+|+++|.++|.+.|++.+||++|+.+++ +++. +..
T Consensus 265 ~i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~ 323 (378)
T cd03682 265 LIEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVS 323 (378)
T ss_pred HHHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHH
Confidence 8877 4432 2345678999999999999999999999999999999999997 3321 234
Q ss_pred hHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHH
Q 004538 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 281 (746)
Q Consensus 231 ~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v 281 (746)
.++.|||||.+++++|+|++++++++|++.. ....+.++++.+|+.+
T Consensus 324 ~~~~~Gmaa~laa~~raPlt~ivl~~Eltg~----~~~~p~~ia~~ia~~~ 370 (378)
T cd03682 324 LLAALGFVAVFAGATNTPLACIIMGIELFGA----ENAPYFFIACLVAYLF 370 (378)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhCc----cchHHHHHHHHHHHHH
Confidence 7899999999999999999999999999873 2233444444444443
No 27
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-11 Score=125.02 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=93.9
Q ss_pred hccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-cc
Q 004538 581 MRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SI 659 (746)
Q Consensus 581 l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i 659 (746)
+..+++.|||+++++ ++.++..+ .|..++|.++. +...||.. +..+..|+ +.
T Consensus 242 ~~~LtcadIMSrdVv---tv~~~ts~------dhA~~ll~~H~-ikaLPV~d-----------------~~~rl~GiVt~ 294 (382)
T COG3448 242 MGELTCADIMSRDVV---TVSTDTSI------DHARKLLQEHR-IKALPVLD-----------------EHRRLVGIVTQ 294 (382)
T ss_pred hccccHHHhcCccce---ecCCcCCh------HHHHHHHHHcC-cccccccc-----------------cccceeeeeeH
Confidence 467899999999998 66566555 78888888877 66677633 33334444 33
Q ss_pred ccccC--C--cc---ccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcC
Q 004538 660 DDIHL--S--SD---DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 660 ~dl~~--~--~~---~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~ 732 (746)
.|+.- . +- .....-.++.+|++...|+++|++..+..-.|.+-|++++||+|++||++||||..|++.++.+.
T Consensus 295 ~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 295 RDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred HHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 33310 0 00 00112347889999999999999999999999999999999999999999999999999987754
No 28
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.29 E-value=7.5e-11 Score=129.47 Aligned_cols=185 Identities=24% Similarity=0.247 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhcccc--ccCCChH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPA--AAGSGIP 151 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~--a~GsGip 151 (746)
..+...+++|+++|+++.+|+....++++++.+.. +.....++ .. ++.+++.+ ++.++.|+ ..|.|..
T Consensus 162 ~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~~~l-~~---~i~gl~~g-~l~~~~p~~~~~g~G~~ 231 (355)
T PF00654_consen 162 WELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-----RLKIPPIL-RP---VIGGLVIG-LLAFFFPEGSVLGSGYE 231 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHH-HH---HHHHHHHH-HHHHSSGG-SGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccchHH-HH---HHHHHHHH-HHHHHHhhhcccCCcHH
Confidence 34567899999999999999999999887554321 00011111 21 22233333 34556688 9999998
Q ss_pred hHHHhhcccc--cccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCCh---
Q 004538 152 EIKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSD--- 226 (746)
Q Consensus 152 ev~~~l~g~~--~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~--- 226 (746)
.++..+++.. ..-..-.-..+.|++.+.+++++|.++|...|++-+|+++|..++... ..+-++
T Consensus 232 ~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~-----------~~~~~~~~~ 300 (355)
T PF00654_consen 232 LIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALL-----------GSFFPGISS 300 (355)
T ss_dssp HHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHH-----------HHH-GGG-T
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHH-----------HhhCCCcCC
Confidence 9999887631 111222345789999999999999999999999999999999999732 211011
Q ss_pred hhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHH
Q 004538 227 RDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (746)
Q Consensus 227 ~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (746)
.+...++.+||+|.++++.|+|++.+++.+|.+.+ .+...+.++++++|..+.
T Consensus 301 ~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~ 353 (355)
T PF00654_consen 301 VDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVA 353 (355)
T ss_dssp -SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh
Confidence 14678999999999999999999999999999985 455566666666666554
No 29
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.4e-10 Score=130.42 Aligned_cols=182 Identities=24% Similarity=0.244 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHHH
Q 004538 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (746)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (746)
....+++|++.|+.+.++.+.....++++. + ...+..+.. +++++...+...+.|+..|.|...+..
T Consensus 235 ~~~~~~lGii~G~~g~~~~~~~~~~~~~~~--------~-~~~~~~~~~----~~~g~l~g~~~l~~P~~lg~G~~~~~~ 301 (443)
T COG0038 235 LLLYLVLGIIAGLFGVLLSRLLALSRRFFR--------R-LPLPPLLRP----ALGGLLVGALGLLFPEVLGNGYGLIQL 301 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c-CcchHHHHH----HHHHHHHHHHHHhchhhhCCCccHHHH
Confidence 346789999999999888877754432221 1 112222222 222333344566789999999888888
Q ss_pred hhcccccccch-hHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccC-ChhhhhhHH
Q 004538 156 YLNGVDIHGIL-LFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFR-SDRDRRDLV 233 (746)
Q Consensus 156 ~l~g~~~~~~l-~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~-~~~~~r~lv 233 (746)
..++.. ... ..-.++.|.+.+.+|++||.++|...|++.+|+++|..+++... ..+. +..+.-.++
T Consensus 302 ~~~~~~--~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~----------~~~~~~~~~~~~~a 369 (443)
T COG0038 302 ALAGEG--GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLG----------LLFPPSILEPGLFA 369 (443)
T ss_pred HHccCc--cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHH----------hhcCccccchHHHH
Confidence 877632 122 35578999999999999999999999999999999999997321 1111 133455799
Q ss_pred HHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHh
Q 004538 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (746)
Q Consensus 234 ~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (746)
.+||+|.++++-|+|++++++++|++.+ .++.+..+.+|++++.+.+..
T Consensus 370 l~Gm~a~la~~~~aPlta~vlv~EmTg~---~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 370 LLGMAAFLAATTRAPLTAIVLVLEMTGN---YQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 466777888888888877654
No 30
>PRK03655 putative ion channel protein; Provisional
Probab=99.20 E-value=3.7e-10 Score=125.65 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..|...+++|+++|+++.+|.......+++.... ..+++ +. .+.+++.+.+.....|...|+|..++
T Consensus 221 ~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~---------~~p~~-~~---~lgGl~vg~l~l~~~~~~~g~Gy~~i 287 (414)
T PRK03655 221 TDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL---------KNPVL-VL---GIGGFILGILGVIGGPLTLFKGLDEM 287 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccchH-HH---HHHHHHHHHHHHHhCCccccCCHHHH
Confidence 3456778899999999999988776655443211 11221 11 23344445554445688899999999
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhHH
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 233 (746)
+..+++.+.+-..-.-..+.|++.+.+|++||.++|...|++.+||++|+.+++. + ++.+....+
T Consensus 288 ~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v 352 (414)
T PRK03655 288 QQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITV 352 (414)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHH
Confidence 9887653322111122467999999999999999999999999999999999872 1 234456788
Q ss_pred HHhhhhhhhhhhc----CcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHH
Q 004538 234 TCGCAAGVAAAFR----APVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (746)
Q Consensus 234 ~~GaAAgvaaaF~----APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (746)
++||+|.++++-+ +|+++++.++|++ ..+.+.++++++.+.
T Consensus 353 ~~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 353 SCAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 9999999999999 6999999999997 334455566655543
No 31
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.20 E-value=2.5e-10 Score=128.74 Aligned_cols=194 Identities=16% Similarity=0.095 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..+...+++|+++|+++.+|+....++++++.+.. . ....++.. .+.+++.+. +.++.|+..|+|-..+
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~-----~--~~~~~~~~---~l~~l~~~~-l~~~~p~~~~~g~~~i 273 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL-----L--KRYPVLEV---LLVALITAL-ISFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c--chhHHHHH---HHHHHHHHH-HHhChHHHccchhhHH
Confidence 34557899999999999999999998877654321 0 01111121 122333333 3456799999997777
Q ss_pred HHhhccccc----------------ccc----hhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCcccc
Q 004538 154 KGYLNGVDI----------------HGI----LLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKY 213 (746)
Q Consensus 154 ~~~l~g~~~----------------~~~----l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~ 213 (746)
+..+++... ... .-.-.++.|++.+.+|+++|.++|...|++-+||++|..++...+...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~ 353 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA 353 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH
Confidence 776653110 001 112346899999999999999999999999999999999987421100
Q ss_pred ccchhhcc---ccC------ChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 214 HLRYRWLQ---VFR------SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 214 ~l~~~~~~---~f~------~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
. +.. +|. .+.+.-.++.+||||-++++.|+|++++++++|.+.+ .+.+.+.++++.+|..+.+.
T Consensus 354 ~----~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~~ 426 (445)
T cd03684 354 Y----SYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVADA 426 (445)
T ss_pred h----hCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHHH
Confidence 0 000 010 1233457999999999999999999999999999985 45677778888888777765
Q ss_pred h
Q 004538 285 A 285 (746)
Q Consensus 285 ~ 285 (746)
+
T Consensus 427 ~ 427 (445)
T cd03684 427 I 427 (445)
T ss_pred h
Confidence 4
No 32
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.15 E-value=5e-11 Score=118.72 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=93.4
Q ss_pred ccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-ccc
Q 004538 582 RQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SID 660 (746)
Q Consensus 582 ~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~ 660 (746)
.+.+|+++|+++++ .+..+.++ ++..+++.++. +...|+.. + +...|+ +..
T Consensus 170 Pk~~V~~~~s~~~i---~v~~d~tl------~eaak~f~~~~-i~GaPVvd-----------------~-dk~vGiit~~ 221 (294)
T COG2524 170 PKEKVKNLMSKKLI---TVRPDDTL------REAAKLFYEKG-IRGAPVVD-----------------D-DKIVGIITLS 221 (294)
T ss_pred CcchhhhhccCCce---EecCCccH------HHHHHHHHHcC-ccCCceec-----------------C-CceEEEEEHH
Confidence 45679999999987 44455555 67777777776 67777622 1 244555 666
Q ss_pred cccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 661 DIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 661 dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
|+...-.+-.....+++||.++++|+++|+.+.+|.++|..++.++|.|+|.+|+.+|||||.|+++.+.
T Consensus 222 dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 222 DIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred HHHHHHHcCCccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 6642222223346799999999999999999999999999999999999998899999999999998764
No 33
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.12 E-value=1.3e-10 Score=125.92 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=104.3
Q ss_pred CcchhHHHHHhhCCCC---CCCchhhhhc---cccHhhhcccc--eeeeccCCCcceEEeeeeHHHHHHHHhccccccCC
Q 004538 557 SEGLYEEQAHLRGVPL---LESRPKYKMR---QMTAKEACGAQ--KVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 628 (746)
Q Consensus 557 ~~~iY~~~l~~~~~p~---L~~~~~~~l~---~l~v~dVM~~~--vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~ 628 (746)
.+++|...++.++... ...++...++ .++|+|+|+++ ++ .+.++..+ +++.+.+.++. ..
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~---~v~~~~sv------~~a~~~~~~~~-~~-- 231 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIP---QVALTASV------MDAMLELSRTG-LG-- 231 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCc---EeCCCCCH------HHHHHHHHHcC-CC--
Confidence 5688988888888765 6667777788 89999999987 54 23334444 66766665443 11
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCC-cccccc-CCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCE
Q 004538 629 PLPCDTRGGSKPISHSFSEFVKPASSKGL-SIDDIH-LSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRH 706 (746)
Q Consensus 629 pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~dl~-~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~ 706 (746)
.+.+++++++..|+ +.+|+. ...++.....++.++|++++.++.+++++.++++.|.+.+.++
T Consensus 232 ---------------~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~ 296 (321)
T PRK11543 232 ---------------LVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITA 296 (321)
T ss_pred ---------------EEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCE
Confidence 23334445555565 544543 1011111223578999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHhHHhHh
Q 004538 707 IFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 707 lpVVd~~gklvGIITrkDLl~~ 728 (746)
+||||++++++|+||++|++++
T Consensus 297 lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 297 APVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEEEcCCCeEEEEEEHHHHHhc
Confidence 9999988999999999999875
No 34
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.10 E-value=1.9e-10 Score=124.99 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=101.9
Q ss_pred CcchhHHHHHhhCCCC---CCCchhhhh---ccccHhhhccc--ceeeeccCCCcceEEeeeeHHHHHHHHhccccccCC
Q 004538 557 SEGLYEEQAHLRGVPL---LESRPKYKM---RQMTAKEACGA--QKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 628 (746)
Q Consensus 557 ~~~iY~~~l~~~~~p~---L~~~~~~~l---~~l~v~dVM~~--~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~ 628 (746)
.+++|...++.+|.-. ...++...+ +.++|+|+|++ +++ .+.++..+ +++.+.|.++. ...
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~---~v~~~~sl------~~a~~~~~~~~-~~~- 237 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIP---HVSKTASL------RDALLEITRKN-LGM- 237 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCe---EECCCCCH------HHHHHHHHhcC-CCe-
Confidence 5688888888888765 555555566 88999999986 655 23334444 56767665543 111
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCC-cccccc--CCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCC
Q 004538 629 PLPCDTRGGSKPISHSFSEFVKPASSKGL-SIDDIH--LSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLR 705 (746)
Q Consensus 629 pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~dl~--~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr 705 (746)
+.+.+++++..|+ +.+|+. ..........+++++|++++.++.+++++.+++++|.+.+.+
T Consensus 238 ----------------~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~ 301 (326)
T PRK10892 238 ----------------TVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHIT 301 (326)
T ss_pred ----------------EEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCc
Confidence 1122334455565 555543 111111123468899999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEeHhHHhHh
Q 004538 706 HIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 706 ~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++||+|+ ++++|+||++|++++
T Consensus 302 ~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 302 SVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred EEEEeeC-CEEEEEEEhHHhHhc
Confidence 9999986 899999999999875
No 35
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.08 E-value=1.9e-09 Score=122.20 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHh
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..+...+++|+++|+++.+|+....+.++++... .+. .....+....+.+++.+.+. + +
T Consensus 274 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~lv~~~~~~~~-~----------~- 333 (466)
T cd03685 274 YFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI-----NHK---GKLLKVLEALLVSLVTSVVA-F----------P- 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccc---cchhHHHHHHHHHHHHHHHH-H----------H-
Confidence 34456789999999999999999998887654322 000 01111122222232322221 1 0
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhccccCChhhhhhH
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 232 (746)
..-.-.++.|++.+.+|+++|.++|...|++-+||++|..++..... ++.. ...+.-.+
T Consensus 334 ------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~~--~~~~~~~~ 392 (466)
T cd03685 334 ------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFGF--TSIDPGLY 392 (466)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hccc--cCCCchHH
Confidence 01133457899999999999999999999999999999999873211 1111 23345679
Q ss_pred HHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 233 v~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
+.+||||-++++.|+|++++++.+|.+.+ .+.+.+.++++++|..+.+.
T Consensus 393 aliGmaa~lag~~raPlt~iviv~ElTg~---~~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 393 ALLGAAAFLGGVMRMTVSLTVILLELTNN---LTYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45667777777777777764
No 36
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.04 E-value=1.9e-10 Score=119.16 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhhhCcchhHHHHHhhCCCCCCCchhhhhccccHhhhccc--ceeeeccCCCcceEEeeeeHHHHH
Q 004538 539 LPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--QKVIDHSRNGERLVIGLVLRSHLL 616 (746)
Q Consensus 539 l~pimia~~va~~v~~~~~~~iY~~~l~~~~~p~L~~~~~~~l~~l~v~dVM~~--~vVv~~~~~~~~~l~GlIlR~~L~ 616 (746)
-+|++-+.-=.+.|+...|+.+|+.+++. . -++|+|+|++ +.. ...++.++ .+..
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKk-d-------------I~~Vedi~~P~~~~~---yL~~~d~v------~d~~ 213 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKK-D-------------IITVEDIMTPLEDTS---YLRETDTV------EDWL 213 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhh-h-------------eeeHHHhccccccce---eccccccH------HHHH
Confidence 34556555556677887889999988863 2 2789999984 111 11223333 6666
Q ss_pred HHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-ccccccCCccccccccccccccCCCCeeecCCCCHHHH
Q 004538 617 VLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKV 695 (746)
Q Consensus 617 ~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a 695 (746)
.+.++.. +.++|| ++......|+ +.+|+.- ......+..+|+++|++|.+.+++..+
T Consensus 214 ~l~~kt~-~sRfPV-----------------vn~~~kvvGvVt~rDv~~----~~~~t~ieKVMtknp~tv~~~tsVAsv 271 (432)
T COG4109 214 DLVEKTG-HSRFPV-----------------VNRSMKVVGVVTMRDVLD----KKPSTTIEKVMTKNPITVRAKTSVASV 271 (432)
T ss_pred HHHHHcC-CCccce-----------------ecccceEEEEEEehhhhc----CCCCccHHHHhccCCeeecccchHHHH
Confidence 6666655 666666 3333344454 4444421 112356788999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcchhhh
Q 004538 696 YNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTVEL 738 (746)
Q Consensus 696 ~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~~~~~ 738 (746)
.+.|-.-|++-+||+|++++++|+|||+|+++.++....+...
T Consensus 272 aq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqv 314 (432)
T COG4109 272 AQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQV 314 (432)
T ss_pred HHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999998754444433
No 37
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.99 E-value=8.4e-09 Score=115.55 Aligned_cols=170 Identities=18% Similarity=0.117 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..+...+++|+++|+++.+|+....++++++.+.... ......++ ...+.+++.+.+. +
T Consensus 234 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~i~~~~~-~------------- 292 (416)
T cd01036 234 YEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR---KTARYRVL----EPVLFTLIYSTIH-Y------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhHH----HHHHHHHHHHHHH-H-------------
Confidence 3455789999999999999999999887765432110 00111111 1122222322221 1
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhcccc------CChh
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVF------RSDR 227 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~~f------~~~~ 227 (746)
. . .-.-.++.|++.+.+++++|.++|...|++-+||++|..++...+. +++.. ....
T Consensus 293 ---~------~-~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~-------~~~~~~~~~~~~~~~ 355 (416)
T cd01036 293 ---A------P-TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHR-------IAVAGIGAESATLWA 355 (416)
T ss_pred ---H------H-HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-------HccccccccccCCcc
Confidence 0 0 1134578999999999999999999999999999999999873211 11100 0123
Q ss_pred hhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 228 DRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 228 ~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
+...++.+||||-++++.|+|++++++.+|.+.+ .+...+.++++++|..+.+.
T Consensus 356 ~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 356 DPGVYALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred ChHHHHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999999976 45666777777777766654
No 38
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.95 E-value=1.5e-09 Score=85.88 Aligned_cols=56 Identities=30% Similarity=0.554 Sum_probs=52.8
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++++|+++++++++++++.++.+.|++.+.+++||+|++++++|+||++||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999998864
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.83 E-value=6.6e-09 Score=117.23 Aligned_cols=124 Identities=13% Similarity=0.161 Sum_probs=92.2
Q ss_pred hhhhhccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 004538 577 PKYKMRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKG 656 (746)
Q Consensus 577 ~~~~l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g 656 (746)
....++.++++++|.++++ .+.++..+ +++..++.++. +...| +++++++..|
T Consensus 82 q~~~l~~VKv~~iMi~~pv---tv~~d~tv------~eA~~~m~~~~-~s~l~-----------------VVD~~gklvG 134 (479)
T PRK07807 82 VAEVVAWVKSRDLVFDTPV---TLSPDDTV------GDALALLPKRA-HGAVV-----------------VVDEEGRPVG 134 (479)
T ss_pred HHHHHhhcccccccccCCe---EECCCCCH------HHHHHHHHhcC-CceEE-----------------EECCCCeEEE
Confidence 3446788899999988776 44445554 67777776654 33333 3344444556
Q ss_pred C-ccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 657 L-SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 657 ~-~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
+ +.+|+...+. ..+++++|++++.++++++++.+++++|.+.+.+++||+|++++++|+||++||++....
T Consensus 135 IVT~rDL~~~~~----~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 135 VVTEADCAGVDR----FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred EEeHHHHhcCcc----CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 5 5566542211 235889999999999999999999999999999999999988999999999999987654
No 40
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.79 E-value=7.1e-08 Score=108.36 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhH
Q 004538 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
..|...+++|+++|+++.+|+....+.++++.+... ...-........ ..+++++.+.+. .| .
T Consensus 230 ~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---~~~~g~~~~~l~---~p---------~ 292 (426)
T cd03683 230 QELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRL--FSKFLKRSPLLY---PAIVALLTAVLT---FP---------F 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcccchHHH---HHHHHHHHHHHH---HH---------H
Confidence 445678999999999999999998888776532210 000000111111 122233323221 13 0
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccccchhhcc----c-cCChhh
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ----V-FRSDRD 228 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~l~~~~~~----~-f~~~~~ 228 (746)
..-.-.++.|++.+.+|+++|.++|...|+.-+||++|..++..... +++ . .....+
T Consensus 293 -----------~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~-------~~p~~~~~~~~~~~~ 354 (426)
T cd03683 293 -----------LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAV-------LFPEGIRGGISNPIG 354 (426)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHH-------HcCcccccCCCCCcC
Confidence 11234578999999999999999999999999999999998863211 111 0 001234
Q ss_pred hhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 004538 229 RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (746)
Q Consensus 229 ~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (746)
.-.++.+||||-++++.|+|.+.+ +.+|++.+ .+.+.+.++++++|..+.+.
T Consensus 355 ~~~~alvGmaa~~a~~~ra~~t~v-lv~E~Tg~---~~~llpl~ia~~ia~~v~~~ 406 (426)
T cd03683 355 PGGYAVVGAAAFSGAVTHTVSVAV-IIFELTGQ---ISHLLPVLIAVLISNAVAQF 406 (426)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHh-eeeeecCC---cchHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999775 89999976 35666777777777766654
No 41
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.69 E-value=3.3e-08 Score=111.85 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=90.9
Q ss_pred ccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-ccc
Q 004538 582 RQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SID 660 (746)
Q Consensus 582 ~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~ 660 (746)
+.-+|+++|+++++ .+.++.++ +++.+.+++.. -.. +....+.+.+++++..|. +.+
T Consensus 129 ~e~tvg~iMt~~~~---~v~~~~tv------~eal~~l~~~~-~~~------------~~~~~v~Vvd~~~~l~GvV~l~ 186 (449)
T TIGR00400 129 SDDSAGRIMTIEYV---ELKEDYTV------GKALDYIRRVA-KTK------------EDIYTLYVTNESKHLKGVLSIR 186 (449)
T ss_pred CcchHHHhCcCceE---EECCCCcH------HHHHHHHHhcC-CCc------------cceeEEEEECCCCeEEEEEEHH
Confidence 45689999998876 33344444 67777776422 000 001122223445555665 666
Q ss_pred cccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcc
Q 004538 661 DIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 661 dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~ 734 (746)
|+...++ ...++++|++.++++++++++.++.+.|++.+...+||||++|+++|+||++|+++.+.++..
T Consensus 187 dLl~a~~----~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ 256 (449)
T TIGR00400 187 DLILAKP----EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEAT 256 (449)
T ss_pred HHhcCCC----CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhH
Confidence 7643322 235899999999999999999999999999999999999998999999999999998876554
No 42
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.66 E-value=4.4e-08 Score=88.53 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred cccCCCCCCC-ccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHh
Q 004538 648 FVKPASSKGL-SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 726 (746)
Q Consensus 648 ~~~~~~~~g~-~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl 726 (746)
.+++++..|+ +..|+.....+......+.++|...+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++
T Consensus 30 ~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 30 VDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred EcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 3444444555 555543211111112347888988889999999999999999999999999999889999999999997
Q ss_pred H
Q 004538 727 I 727 (746)
Q Consensus 727 ~ 727 (746)
+
T Consensus 110 ~ 110 (111)
T cd04603 110 R 110 (111)
T ss_pred c
Confidence 6
No 43
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.63 E-value=8.3e-08 Score=89.24 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=84.2
Q ss_pred ccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCC-Cccc
Q 004538 582 RQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKG-LSID 660 (746)
Q Consensus 582 ~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~ 660 (746)
..++++++|++|++ ...++..+ ++...+|+++. |+..||... + ...| ++-+
T Consensus 63 ~~ita~~iM~spvv---~v~pdDsi------~~vv~lM~~~g-~SQlPVi~~-~-----------------k~VGsItE~ 114 (187)
T COG3620 63 TRITAKTIMHSPVV---SVSPDDSI------SDVVNLMRDKG-ISQLPVIEE-D-----------------KVVGSITEN 114 (187)
T ss_pred ceEeHhhhccCCee---EECchhhH------HHHHHHHHHcC-CccCceeeC-C-----------------eeeeeecHH
Confidence 56899999999998 44455555 78888999888 777777322 1 1111 1222
Q ss_pred ccc---CCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 661 DIH---LSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 661 dl~---~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++. +...+.-....++++|..+-.+|+++.|+..+.+++..+.. +.|+++ |+++||||+.|+++...+
T Consensus 115 ~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e~-G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 115 DIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVEN-GKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEeC-CceEEEEeHHHHHHHHhc
Confidence 221 11112122456899999888899999999999999886654 667754 999999999999987653
No 44
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.59 E-value=1.9e-07 Score=84.72 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=50.4
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 60 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 60 PVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 467788889999999999999999999999999999998899999999999875
No 45
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.59 E-value=1e-07 Score=107.62 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=85.9
Q ss_pred hhccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-c
Q 004538 580 KMRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-S 658 (746)
Q Consensus 580 ~l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 658 (746)
.++.+++.++|.++++ .+.++..+ +++..+|+++. +...++ .+ +++..|+ +
T Consensus 84 ~v~~VKv~eim~~~pv---tv~p~~tI------~eA~~lm~~~~-~~~~vV-----------------vD-~gklvGIVT 135 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPI---TLAPHDTV------SDAMALIHKRA-HGAAVV-----------------IL-EDRPVGLVT 135 (475)
T ss_pred HHhhcchhhccccCCe---EECCCCCH------HHHHHHHHhcC-CeEEEE-----------------EE-CCEEEEEEE
Confidence 4567788888887766 33344444 66777776544 221111 22 2334454 5
Q ss_pred cccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 659 IDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 659 i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
.+|+...+ ...+++++|+++++++++++++.++.++|.+.+.+++||+|++++++|+||++||++....
T Consensus 136 ~rDL~~~~----~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 136 DSDLLGVD----RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred HHHhhcCC----CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 55653221 1245889999999999999999999999999999999999988999999999999986654
No 46
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.57 E-value=4.4e-08 Score=104.32 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=85.8
Q ss_pred hccccHhhhccc--ceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccC-CCCCCC
Q 004538 581 MRQMTAKEACGA--QKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP-ASSKGL 657 (746)
Q Consensus 581 l~~l~v~dVM~~--~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~-~~~~g~ 657 (746)
+...+|+|+|++ +++ .+..+..+ +++...+.+.. +.+.|| ++++ +...|+
T Consensus 64 l~~~~V~diMtpr~~i~---~l~~~~sl------~e~~~~i~~~~-~sr~PV-----------------~~~~~d~iiGi 116 (292)
T PRK15094 64 IADQRVRDIMIPRSQMI---TLKRNQTL------DECLDVIIESA-HSRFPV-----------------ISEDKDHIEGI 116 (292)
T ss_pred cCCCEEeEEccchHHEE---EEeCCCCH------HHHHHHHHhcC-CcEEEE-----------------ecCCCCcEEEE
Confidence 455699999997 444 22223433 66767676655 566565 2221 233444
Q ss_pred -ccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcc
Q 004538 658 -SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 658 -~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~ 734 (746)
.++|+.....+.....++.++|.+ +++|++++++.++++.|++.+.+.+||+|+.|.++|+||++|+++.+..+..
T Consensus 117 v~~kDll~~~~~~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 117 LMAKDLLPFMRSDAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred EEHHHHHhHhhccCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCc
Confidence 455553111111112347788865 5699999999999999999999999999988999999999999998876543
No 47
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.52 E-value=8.5e-08 Score=106.61 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=98.2
Q ss_pred ccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-ccccc
Q 004538 584 MTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SIDDI 662 (746)
Q Consensus 584 l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~dl 662 (746)
-+|+.+|+...+ .+.++.++ ++.+..+++.. - +. +....+.++++.++..|. +++++
T Consensus 132 ~taG~~Mt~e~v---~l~~~~Tv------~~al~~ir~~~-~-------~~-----e~~~~lyVvD~~~~L~Gvvsl~~L 189 (451)
T COG2239 132 DTAGRIMTTEFV---TLPEDVTV------DEALDRIRERA-E-------DA-----ETIYYLYVVDEKGKLLGVVSLRDL 189 (451)
T ss_pred hhhhccceeeeE---EeccCcCH------HHHHHHHHHhc-c-------cc-----cccceEEEECCccceEEEeeHHHH
Confidence 368888998887 55455443 78888888654 1 00 222345557777778887 88887
Q ss_pred cCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcch
Q 004538 663 HLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTT 735 (746)
Q Consensus 663 ~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~~ 735 (746)
...+.+ ..++++|++.+++|.++++.+++.++|+++++-++||||++|+++|+||-.|+++.+.++..+
T Consensus 190 l~a~~~----~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~e 258 (451)
T COG2239 190 LTAEPD----ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATE 258 (451)
T ss_pred hcCCcH----hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHH
Confidence 655433 358899999999999999999999999999999999999999999999999999998776544
No 48
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.50 E-value=1e-07 Score=106.31 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=88.4
Q ss_pred hccccHhhhccc--ceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-
Q 004538 581 MRQMTAKEACGA--QKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL- 657 (746)
Q Consensus 581 l~~l~v~dVM~~--~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~- 657 (746)
+++.+|+|+|++ +++ .+..+..+ +++.+.+.++. |++.||..+. .++..|+
T Consensus 188 l~~~~v~diMtpr~~v~---~l~~~~~~------~e~~~~~~~~~-~sR~PV~~~~----------------~d~ivGiv 241 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIF---ALDIETSF------SEIIPKIIENG-YSRIPVYKET----------------IDNITGVL 241 (408)
T ss_pred cCCCEeeeeCCchHhEE---EEECCCCH------HHHHHHHHhCC-CCEEEEEcCC----------------CCceEEEE
Confidence 578899999997 444 22223333 67878888776 7777773211 1223444
Q ss_pred ccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 658 SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 658 ~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
..+|+....++ ...+++++|. +|++|++++++.++++.|++.+.+..+|+|+.|.++|+||.+|+++.+..+.
T Consensus 242 ~~kDll~~~~~--~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei 314 (408)
T TIGR03520 242 YIKDLLPHLNK--KNFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI 314 (408)
T ss_pred EHHHHHhHhcc--CCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence 44554311111 1245778886 5889999999999999999999999999999899999999999999986443
No 49
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.3e-07 Score=82.00 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=48.0
Q ss_pred ccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 676 GPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 676 ~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.+.|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 68 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 68 RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 35566778899999999999999999999999999988999999999999863
No 50
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=1.8e-07 Score=106.24 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCCCC-ccccccCCccccccccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 653 SSKGL-SIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 653 ~~~g~-~i~dl~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+..|+ +..|++.... ....+++++|++ +++++++++++.+|+++|.+.+.+++||||++|+++|+||++|+++..
T Consensus 142 kLvGIVT~~DLr~~~~--~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 142 KLLGIVTSRDYRISRM--SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEEEEEEcHHhhcccc--CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 34454 5555542211 223468899996 678999999999999999999999999999889999999999999864
No 51
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=2.3e-07 Score=85.09 Aligned_cols=57 Identities=25% Similarity=0.460 Sum_probs=52.4
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++.++|++.+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 68 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 68 PETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred cccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 346788899999999999999999999999999999999988999999999999763
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=7.7e-07 Score=80.33 Aligned_cols=54 Identities=28% Similarity=0.467 Sum_probs=49.6
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++++++++.+++++|.+.+.+++||+|++++++|+||++|++.
T Consensus 59 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 366778888889999999999999999999999999998899999999999874
No 53
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=8.7e-07 Score=81.40 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=51.5
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|.+.+.++++++++.++++.|++.+.+++||+|++|+++|+||++|++++
T Consensus 70 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 70 EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 45778888889999999999999999999999999999987999999999999864
No 54
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=3.2e-07 Score=82.44 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=50.0
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++++++++.+++++|.+.+.+++||+|++++++|+||++|+.+
T Consensus 57 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 57 PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 467788888899999999999999999999999999998899999999999975
No 55
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.41 E-value=1.3e-07 Score=87.46 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=49.6
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHH---------cCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQ---------LGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~---------~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
..++++|++++.++.+++++.++.+++.. .+.+++||+|++|+++||||++|+++++
T Consensus 59 ~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 59 DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 35888999999999999999999996543 3689999999889999999999999763
No 56
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.40 E-value=3.7e-07 Score=81.95 Aligned_cols=53 Identities=30% Similarity=0.517 Sum_probs=49.1
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++++++++.+++++|.+.+.+++||+| +|+++|+||++|+++
T Consensus 57 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 57 PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred cHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 46678888999999999999999999999999999999 599999999999975
No 57
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.40 E-value=3.7e-07 Score=85.49 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=51.2
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++.+.++.+++++.+++++|++.+.+++||+| +|+++|+||++|++++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 468899999999999999999999999999999999999 6999999999999763
No 58
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.39 E-value=1.2e-06 Score=79.30 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=49.1
Q ss_pred ccccccCCCCeeecCC--CCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPED--MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~--~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.+.++|.+.+.+++++ +++.+++++|.+.+...+||+|++|+++|+||++|++++
T Consensus 59 ~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 59 PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 3567788888889887 799999999999999999999988999999999999863
No 59
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.39 E-value=4.9e-07 Score=81.32 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=51.0
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCC-CCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~-~gklvGIITrkDLl~ 727 (746)
.++.++|++.+.++++++++.++++.|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 3577889999999999999999999999999999999987 799999999999975
No 60
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.39 E-value=5.9e-07 Score=102.27 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=81.1
Q ss_pred hhhhccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 004538 578 KYKMRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL 657 (746)
Q Consensus 578 ~~~l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~ 657 (746)
...+++++++|+|+++++ .+.++..+ +++.+.|.++. +...|+ ++++++..|+
T Consensus 329 ~~~l~~~~v~~im~~~~~---~v~~~~tl------~ea~~~m~~~~-~~~~~V-----------------vd~~~~~~Gi 381 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPV---TVHPTETV------GDAIEILREYG-FDQLPV-----------------VTEAGKVLGS 381 (454)
T ss_pred HHHhccCCHHHhCcCCCe---EECCCCcH------HHHHHHHHHcC-CCEEEE-----------------EcCCCeEEEE
Confidence 345888999999988775 33334444 56666676543 222232 3333444454
Q ss_pred -cccccc--CCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 658 -SIDDIH--LSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 658 -~i~dl~--~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+.+|+. +.+++.....++.++|++++.++++++++.++.++|.+.+ .|||+++|+++|+||++|+++++
T Consensus 382 vt~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 382 VTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred EEHHHHHHHHhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 555543 1111111223588899999999999999999999999864 35555569999999999999875
No 61
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=6.6e-07 Score=80.98 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=51.1
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++++.++++++++.++.++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 60 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 60 VNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred cCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 4688899988999999999999999999999999999998 999999999999763
No 62
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.37 E-value=3.7e-07 Score=80.89 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=42.9
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhH
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLI 727 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~ 727 (746)
+.++++++++.++.++|.+.+.+++||+|++ |+++|+||++|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7799999999999999999999999999987 89999999999975
No 63
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.36 E-value=7.3e-07 Score=80.76 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=51.4
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC--CeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~--gklvGIITrkDLl~~ 728 (746)
..++++|.+++.++.+++++.+++++|.+.+.+++||+|++ |+++|+||++|++++
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 34778899999999999999999999999999999999987 799999999999863
No 64
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=1.6e-06 Score=78.41 Aligned_cols=53 Identities=36% Similarity=0.510 Sum_probs=46.3
Q ss_pred cccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 675 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 675 l~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+.++|++ .+.++.+++++.+++++|++.+.+++||+|++++++|+||++|+++
T Consensus 59 v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 59 VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred hhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4556653 2568999999999999999999999999998799999999999875
No 65
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=2e-06 Score=78.99 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=47.5
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHh
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 726 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl 726 (746)
..++|.+++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 3456788889999999999999999999999999999889999999999974
No 66
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=9.7e-07 Score=79.06 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=51.7
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+++++|++.+.++++++++.++.++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 53 TTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 4688999989999999999999999999999999999998899999999999975
No 67
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.9e-06 Score=77.53 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=49.2
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.+.++|++.+.++++++++.+++++|.+.+.+.+||+|+ |+++|+||++|++++
T Consensus 59 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 59 TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 466788888889999999999999999999999999985 999999999999763
No 68
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.33 E-value=3.7e-07 Score=93.00 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=54.6
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
.++..++|.++.+++++++++.++.+++.+++++.+||+|++.|++||||++|+.+..
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA 301 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence 3568899999999999999999999999999999999999999999999999999843
No 69
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.32 E-value=7.7e-07 Score=81.24 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=49.3
Q ss_pred cccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC---CeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~---gklvGIITrkDLl~ 727 (746)
..+.++|.+ .+.++++++++.++.++|.+.+.+++||+|++ ++++|+||++|+++
T Consensus 58 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 58 VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 456778875 67899999999999999999999999999986 69999999999875
No 70
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=2.9e-06 Score=76.27 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=49.5
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|++++.++++++++.++.+.|.+.+...+||+|++|+++|+||++|+++
T Consensus 58 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 58 PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 366778888999999999999999999999999999998899999999999975
No 71
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=1.1e-06 Score=80.45 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=52.9
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 467889999999999999999999999999999999999988899999999999864
No 72
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=1.2e-06 Score=81.58 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=51.3
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++++..+.+++++.+++++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 78 KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 3688899999999999999999999999999999999998 999999999999864
No 73
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=2.1e-06 Score=77.42 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=49.9
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++|++.+.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 61 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 61 TVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred cHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 467788888999999999999999999999999999998 999999999999763
No 74
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.30 E-value=2.7e-06 Score=76.14 Aligned_cols=54 Identities=33% Similarity=0.616 Sum_probs=49.9
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+.++|++.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 57 ~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 57 PVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 466778888999999999999999999999999999998899999999999975
No 75
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=1.2e-06 Score=78.90 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=51.3
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|.+++.++++++++.++++.|.+.+..++||+|++|+++|+||++|+++
T Consensus 58 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 58 AKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 4678899999999999999999999999999999999998899999999999975
No 76
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=3.3e-06 Score=75.74 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=49.7
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++|.+++.++++++++.+++++|.+.+.+++||+|+ ++++|+||++|++++
T Consensus 60 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 60 PVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 467788888899999999999999999999999999998 999999999999763
No 77
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.30 E-value=3.2e-06 Score=75.37 Aligned_cols=54 Identities=30% Similarity=0.421 Sum_probs=49.4
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 55 SLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred cHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 356678888899999999999999999999999999998899999999999875
No 78
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=1.5e-06 Score=76.59 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=43.4
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+.++++++++.++.++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 7799999999999999999999999999988999999999999863
No 79
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.29 E-value=1.1e-06 Score=92.73 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=74.1
Q ss_pred cccHhhhcccc-eeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-ccc
Q 004538 583 QMTAKEACGAQ-KVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SID 660 (746)
Q Consensus 583 ~l~v~dVM~~~-vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~ 660 (746)
-++|+|+|+++ ++ .+.++..+ .++...+.+.. .. .+.+.+++++..|+ +.+
T Consensus 154 ~~~v~~im~~~~~~---~v~~~~~v------~~a~~~~~~~~-~~-----------------~~~Vvd~~g~~~Givt~~ 206 (268)
T TIGR00393 154 LVKVKDLMQTTDLP---LIAPTTSF------KDALLEMSEKR-LG-----------------SAIVCDENNQLVGVFTDG 206 (268)
T ss_pred hhhHHHHhCCCCCC---cCCCCCcH------HHHHHHHhhcC-Cc-----------------EEEEEeCCCCEEEEEEcH
Confidence 47889999877 54 23333333 55656665432 11 22223334444454 444
Q ss_pred cccCC-ccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEe
Q 004538 661 DIHLS-SDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 721 (746)
Q Consensus 661 dl~~~-~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIIT 721 (746)
|+... ..+.....+++++|.+.+.++++++++.+++++|.+.+.+++||+|++|+++|+|+
T Consensus 207 dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 207 DLRRALLGGGSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HHHHHHhcCCcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44210 01111234588999999999999999999999999999999999998899999986
No 80
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=3.7e-06 Score=75.29 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=48.8
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+.++|.+.+.++++++++.+++++|.+.+.+++||++++++++|+||++|+.+
T Consensus 57 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 56677788899999999999999999999999999998899999999999864
No 81
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.29 E-value=1e-06 Score=79.24 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=51.5
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|++.+.++++++++.+++++|.+.+.+++||+|++++++|+||++|++.
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 4688899999999999999999999999999999999998899999999999975
No 82
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.27 E-value=1.8e-06 Score=95.50 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=55.8
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 671 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 671 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
....++++|+.+|++|.+++.+-+|.-+|.+++++|+||+++ |+++||||.+||++...+
T Consensus 212 ~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~-gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 212 KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED-GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-CeeeEEeeHHHHHHhhCC
Confidence 456799999999999999999999999999999999999987 999999999999988654
No 83
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.27 E-value=8.3e-07 Score=100.39 Aligned_cols=116 Identities=20% Similarity=0.310 Sum_probs=81.4
Q ss_pred cHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccC---CCCCCC-ccc
Q 004538 585 TAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP---ASSKGL-SID 660 (746)
Q Consensus 585 ~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~---~~~~g~-~i~ 660 (746)
+.++.|.++++ .+.++.++ .++.+++.++. +...|+ +++. ++..|+ +.+
T Consensus 81 ~~~~~~~~~~v---tl~~~~tv------~eal~~m~~~~-~s~lpV-----------------vd~~~~~~~lvGIVt~r 133 (450)
T TIGR01302 81 RAENGIISDPV---TISPETTV------ADVLELMERKG-ISGIPV-----------------VEDGDMTGKLVGIITKR 133 (450)
T ss_pred cccCceecCce---EeCCCCCH------HHHHHHHHHcC-CCEEEE-----------------EeCCCCCCeEEEEEEHH
Confidence 45666766655 33334444 66767776554 444444 2222 234444 555
Q ss_pred cccCCccccccccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 661 DIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 661 dl~~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
|+.... +...+++++|+ +++.++++++++.+++++|++.+.+++||+|++|+++|+||++|+++...
T Consensus 134 DL~~~~---~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 134 DIRFVK---DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred HHhhhh---cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 553211 12346889999 48999999999999999999999999999999999999999999998753
No 84
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.27 E-value=1.9e-06 Score=77.57 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=51.4
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|.+.+.++++++++.++.++|++.+...+||+|++++++|+||++|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 3588899999999999999999999999999999999997799999999999976
No 85
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.27 E-value=3.2e-06 Score=76.86 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=51.6
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 67 IKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred cCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence 45778898899999999999999999999999999999988999999999999863
No 86
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.26 E-value=1.6e-06 Score=78.49 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=50.0
Q ss_pred cccccccCCCCeeecC--CCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPE--DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~--~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+++++|.+.+.++.+ ++++.+++++|++.+.+++||+|++++++|+||++|+++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 3588899888888866 999999999999999999999998899999999999875
No 87
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.26 E-value=4.1e-06 Score=74.97 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=49.9
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 57 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~ 111 (111)
T cd04612 57 LVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhhC
Confidence 3556788888999999999999999999999999999988999999999999763
No 88
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.25 E-value=2e-06 Score=76.88 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=49.9
Q ss_pred cccccccCCCCeeecC-CCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPE-DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~-~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
..+.++|++.+.++.+ ++++.+++++|.+.+.+.+||+|++++++|+||++|+++
T Consensus 54 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 54 KPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4678899887777777 999999999999999999999998899999999999975
No 89
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.25 E-value=1.5e-06 Score=77.77 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=51.3
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|.+.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5688889989999999999999999999999999999998899999999999975
No 90
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.25 E-value=1.3e-06 Score=99.57 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=54.1
Q ss_pred cccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 673 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 673 ~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
.+++++|++. ..++++++++.+++++|.+.+.+.+||||++++++|+||++|+++....
T Consensus 163 ~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 163 TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 4578899877 6799999999999999999999999999988999999999999998764
No 91
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.25 E-value=2.5e-06 Score=75.90 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=50.2
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++.+++++.+++++|.+.+...+||+|++++++|+||++|+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 367889888889999999999999999999999999998899999999999975
No 92
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.24 E-value=1.3e-06 Score=99.89 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=80.4
Q ss_pred cHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-cccccc
Q 004538 585 TAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SIDDIH 663 (746)
Q Consensus 585 ~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~dl~ 663 (746)
.++|+|.++++ .+.++..+ +++..++.++. +...|+ +++.++..|+ +.+|+.
T Consensus 88 ~~~dim~~~~v---~i~~~~tv------~ea~~~m~~~~-~~~lpV-----------------vd~~g~lvGiVt~~DL~ 140 (486)
T PRK05567 88 RSESGVVTDPV---TVTPDTTL------AEALALMARYG-ISGVPV-----------------VDENGKLVGIITNRDVR 140 (486)
T ss_pred hhhhcccCCCe---EeCCCCCH------HHHHHHHHHhC-CCEEEE-----------------EccCCEEEEEEEHHHhh
Confidence 35677776665 22233333 56666666544 333333 3333344454 455543
Q ss_pred CCccccccccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 664 LSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 664 ~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.... ...++.++|+ ++++++++++++.++.++|.+.+.+.+||+|++|+++|+||++|+++...
T Consensus 141 ~~~~---~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 141 FETD---LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred hccc---CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 2111 1235888998 78899999999999999999999999999999999999999999998754
No 93
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=2.6e-06 Score=78.64 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=47.5
Q ss_pred cccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 677 PFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 677 ~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+.|.+.+.++++++++.++.++|.+.+.+++||+|++++++|+||++|+++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 457778899999999999999999999999999998899999999999975
No 94
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=2.2e-06 Score=78.36 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=52.3
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 356778899999999999999999999999999999999988999999999999863
No 95
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.23 E-value=4.9e-06 Score=74.82 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=49.9
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|++.+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 59 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 367788888999999999999999999999999999998899999999999975
No 96
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.22 E-value=1.2e-06 Score=99.89 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=53.8
Q ss_pred cccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 673 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 673 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+++++|++ ++.++++++++.++.++|.+.+.+.+||+|++++++|+||++|+++...
T Consensus 159 ~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 159 TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 468899987 7899999999999999999999999999999999999999999998754
No 97
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=2.3e-06 Score=76.88 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=50.2
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
..+.++|++.+.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3578889999999999999999999999999999999998 99999999999864
No 98
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.20 E-value=2.1e-06 Score=76.83 Aligned_cols=50 Identities=54% Similarity=0.961 Sum_probs=46.6
Q ss_pred ccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 678 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 678 im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+|.+++.++++++++.+++++|.+.+.+++||++ +|+++|+||++|++++
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 7888899999999999999999999999999996 4999999999999764
No 99
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=1.5e-06 Score=80.39 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=48.0
Q ss_pred ccccccccCCCCeee------cCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhH
Q 004538 672 YIDLGPFLNPSPYVV------PEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLI 727 (746)
Q Consensus 672 ~~dl~~im~~~p~tV------~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~ 727 (746)
..+++++|++.+.++ .+++++.++++.|.+.+.+++||+|++ |+++|+||++|+++
T Consensus 63 ~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 63 ELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred heEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 345788998765443 378999999999999999999999986 79999999999975
No 100
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.16 E-value=2.5e-06 Score=76.57 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=47.4
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+.++|. .+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 58 ~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 4566664 5789999999999999999999999999998899999999999875
No 101
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.16 E-value=3.2e-06 Score=75.90 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=51.2
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++.++|++.+.++++++++.++.++|.+.+.+.+||+|+ ++++|+||++|++++
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 34678899999999999999999999999999999999987 999999999999763
No 102
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.16 E-value=4.4e-06 Score=78.51 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=50.6
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+++++|.+.+.++.+++++.++++.|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4688899988999999999999999999999999999998 99999999999976
No 103
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=4.3e-06 Score=76.24 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=50.6
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++++.++++++++.++.++|.+.+.+++||+|+ ++++|+||++|++++
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 67 LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 3577788888999999999999999999999999999998 999999999999863
No 104
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.15 E-value=3.9e-06 Score=75.26 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=50.8
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|++.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 57 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 57 TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 5688899999999999999999999999999999999998 99999999999975
No 105
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=6.5e-06 Score=75.25 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=51.5
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++|+++++++.+++++.++.+.|.+.+.+.+||+|++++++|++|++|++++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 68 RAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 5788899999999999999999999999999999999988999999999999864
No 106
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=2.9e-06 Score=76.65 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=48.4
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++++|++.+.++++++++.+++++|.+.+ .+||+|++|+++|+||++|++++
T Consensus 63 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 63 LKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 4578899999999999999999999998865 59999988999999999999864
No 107
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.13 E-value=3.4e-06 Score=75.29 Aligned_cols=54 Identities=24% Similarity=0.400 Sum_probs=47.6
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++.++|++.+.++++++++.++.++|++ . .++||+|++++++|+||++|++++
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 45778899889999999999999999998 3 458899888999999999999864
No 108
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=3.9e-06 Score=75.24 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=60.5
Q ss_pred cccCCCCCCC-ccccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHh
Q 004538 648 FVKPASSKGL-SIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 726 (746)
Q Consensus 648 ~~~~~~~~g~-~i~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl 726 (746)
+++.+...|+ +.+++...+ ...++.++|++++.++.+++++.++++.|.+.+.+++||+|++++++|+||++|++
T Consensus 31 vd~~~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 31 VDEEGRLLGVVSLRDLLLAD----PDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred ECCCCCEEEEEEHHHHhcCC----CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 3444444554 444543211 12458889999999999999999999999999999999999889999999999998
Q ss_pred Hh
Q 004538 727 IE 728 (746)
Q Consensus 727 ~~ 728 (746)
++
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 75
No 109
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.12 E-value=1e-05 Score=74.83 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=50.0
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeC--CCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd--~~gklvGIITrkDLl~~ 728 (746)
.++.++|++++.++++++++.++.++|.+.+.+++||++ ++++++|+||++|++++
T Consensus 71 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 71 LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred CcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 357788998899999999999999999999999999994 46899999999999863
No 110
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.11 E-value=6.5e-06 Score=72.91 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=48.7
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 726 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl 726 (746)
.+.++|++.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++
T Consensus 52 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 52 LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 366788889999999999999999999999999999998 9999999999987
No 111
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.11 E-value=5e-06 Score=75.64 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=51.4
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
..++++|.+.+.++++++++.+++++|++.+.+.+||+|++|+++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998899999999999864
No 112
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=71.61 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=48.7
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHH-cCCCEEEEeCCCC-eEEEEEeHhHHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQ-LGLRHIFVVPRAS-RVIGLITRKDLL 726 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~-~glr~lpVVd~~g-klvGIITrkDLl 726 (746)
.+.++|++++.++.+++++.++.++|.+ .+.+++||+|+++ +++|++|++|++
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 4677888889999999999999999999 6999999999976 999999999974
No 113
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.07 E-value=1.7e-05 Score=70.24 Aligned_cols=53 Identities=30% Similarity=0.524 Sum_probs=49.0
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+.++|..++.++++++++.++++.|.+.+.+++||+|++++++|++|++|+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 55677888889999999999999999999999999999899999999999976
No 114
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.07 E-value=6.5e-06 Score=73.25 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=49.1
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 467788888999999999999999999999999999985 99999999999875
No 115
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.05 E-value=5.9e-06 Score=83.05 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=56.3
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
...+.++|.++++++.+|+|++++.++|.+.+.|..||+|+ +|++|++|.+|+.++..+..
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~ 231 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGN 231 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCC
Confidence 34588999999999999999999999999999999999998 59999999999999987743
No 116
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.04 E-value=1.9e-05 Score=70.89 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=48.2
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+.++|++.+.++.+++++.+++++|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 59 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 59 PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 466778888889999999999999999999999999997 59999999999874
No 117
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.01 E-value=8.4e-06 Score=74.23 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=51.1
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
..+++++|.+.+.++++++++.+++++|.+.+..++||+|+ ++++|+||++|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 35688899999999999999999999999999999999988 99999999999975
No 118
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.2e-05 Score=71.51 Aligned_cols=55 Identities=16% Similarity=0.337 Sum_probs=50.9
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+++++|.+.+.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 53 TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence 4778888889999999999999999999999999999988999999999999863
No 119
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.96 E-value=2.4e-05 Score=71.04 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=47.8
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEE---EEeCCCCeEEEEEeHhHHhH
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHI---FVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~l---pVVd~~gklvGIITrkDLl~ 727 (746)
++.++|++++.++.+++++.+++++|.+.+.+++ ||++++++++|+||++|+++
T Consensus 62 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 4778899999999999999999999999987544 68887899999999999875
No 120
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.92 E-value=1.1e-05 Score=75.47 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=57.6
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 671 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 671 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
..+..+.+|+++.+.++|++++.++.++|+..|...+||+++ |+++|-||..|+.+...+..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 456788999999999999999999999999999999999998 99999999999999987654
No 121
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.87 E-value=5e-05 Score=71.95 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=50.4
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.++.++|++.+.++++++++.++++.|.+.+.+++||+++ ++++|+||++|+++
T Consensus 89 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 89 MKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4678889999999999999999999999999999999998 99999999999874
No 122
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.84 E-value=5.4e-05 Score=67.32 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=47.6
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+.++|++.+.++.+++++.++.++|++.+.+.+||+|+ ++++|+||++|+++
T Consensus 54 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 54 LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 55678888899999999999999999999999999986 89999999999875
No 123
>PRK11573 hypothetical protein; Provisional
Probab=97.82 E-value=2.3e-05 Score=87.68 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=84.6
Q ss_pred hccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-cc
Q 004538 581 MRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SI 659 (746)
Q Consensus 581 l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i 659 (746)
+++.+|+|+|++..-+. .+..+..+ +++.+.+.+.. |++.||..+. .++..|+ ..
T Consensus 184 l~~~~v~eiMtPr~~i~-~l~~~~~~------~e~~~~~~~~~-~SR~PVy~~~----------------~D~IiGiv~~ 239 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIV-GIDINDDW------KSILRQLTHSP-HGRIVLYRDS----------------LDDAISMLRV 239 (413)
T ss_pred cCCCChhhcCCccceEE-EEECCCCH------HHHHHHHHhCC-CceEEEEcCC----------------CCceEEEEEH
Confidence 57789999998743111 11123333 67777777766 7777772221 1112233 33
Q ss_pred ccccC--CccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcchh
Q 004538 660 DDIHL--SSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTV 736 (746)
Q Consensus 660 ~dl~~--~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~~~ 736 (746)
+|+-. .+.......++.+++ ++|+.|++++++.++++.|++.+.+-..|+|+.|...|+||.+|+++.+..+..++
T Consensus 240 kDll~~~~~~~~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 240 REAYRLMTEKKEFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred HHHHHHhhccCcCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence 34310 000000112234554 46889999999999999999999999999999999999999999999887555443
No 124
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.77 E-value=6.7e-05 Score=68.46 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
+..++++++++.++.++|.+.+.+++||+|++++++|++|++|+.++..+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~ 51 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE 51 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhc
Confidence 45689999999999999999999999999988999999999999986543
No 125
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.76 E-value=5.3e-05 Score=66.96 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=43.3
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhh
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 729 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~ 729 (746)
++++++++++.++.++|.+.+.+++||+|++ |+++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 5789999999999999999999999999974 8999999999998754
No 126
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=9.9e-05 Score=82.78 Aligned_cols=187 Identities=21% Similarity=0.182 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccCCChHhHH
Q 004538 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (746)
Q Consensus 75 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (746)
-.+..+++|+.+|+.+.++..+--+..+++... ....++. +-++++.+...++.++.|..+=.+...+.
T Consensus 308 EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~----~lg~~pv-------~ev~~vt~iTaiIs~~np~~r~~~~e~i~ 376 (696)
T KOG0475|consen 308 ELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS----KLGKFPV-------LEVVFVTLVTAIISLFNPETRFNMSELIT 376 (696)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHhccchh----hccCCcc-------hhHHHHHHHHHHHHhcCHHHHhhHHHHHH
Confidence 345678999999999999887665555544322 0111211 11233333445567778888777655566
Q ss_pred Hhhccccc------cc-------chhHHHHHHHHHHHHHHhcccCcccCchhHHHHHHHHHHHhhccCccccc-cchhhc
Q 004538 155 GYLNGVDI------HG-------ILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYH-LRYRWL 220 (746)
Q Consensus 155 ~~l~g~~~------~~-------~l~~~~~~~K~~~~~~sv~sG~s~G~EGP~v~iGa~ig~~l~~~~s~~~~-l~~~~~ 220 (746)
..+|.... +. .+-...++.|++.++++.|++.|.|..-|++.+||+.|-.+|-..-+.+. -+|
T Consensus 377 ~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~--- 453 (696)
T KOG0475|consen 377 ILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDF--- 453 (696)
T ss_pred HHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 66553221 11 12245678999999999999999999999999999999988743211111 111
Q ss_pred cccC-ChhhhhhHHHHhhhhhhhhhhcCcchhhhhhhhhhchhhhhhhHHHHHHHHHHH
Q 004538 221 QVFR-SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIV 278 (746)
Q Consensus 221 ~~f~-~~~~~r~lv~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~~~~~~va 278 (746)
..|. +-.........||||-++++-|-|++-|+.-+|.+.. .+...+.+.+.+++
T Consensus 454 ~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~---l~~IlPlm~av~~S 509 (696)
T KOG0475|consen 454 NLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA---LNYILPLMLAVMIS 509 (696)
T ss_pred cccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc---ceeHHHHHHHHHHH
Confidence 1111 1123456788999999999999999999999999976 23344444444433
No 127
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.71 E-value=6.2e-05 Score=87.75 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=56.2
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
..++++|++.+.++++++++.+++++|++.+.+++||+|++|+++|+||++|+.+.+.+..
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~ 128 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDIL 128 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999999998899999999999999776543
No 128
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.69 E-value=0.0001 Score=54.54 Aligned_cols=47 Identities=30% Similarity=0.566 Sum_probs=43.1
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+.++.+++++.++.+.|++.+.+++||++++++++|+++++|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999998754
No 129
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.68 E-value=5.4e-05 Score=85.40 Aligned_cols=131 Identities=22% Similarity=0.242 Sum_probs=83.7
Q ss_pred hccccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccccccCCCCCCCCCCCCCCccccccccccCCCCCCC-cc
Q 004538 581 MRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL-SI 659 (746)
Q Consensus 581 l~~l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i 659 (746)
+++.+|+++|++.--+. ....+... .++...+.+.. |++.||.. .+ .+...|+ ..
T Consensus 203 l~~~~v~eiMtPR~~i~-~l~~~~~~------~~~~~~~~~~~-~SR~PV~~-~~---------------~D~iiGiv~~ 258 (429)
T COG1253 203 LDDRTVREIMTPRTDIV-ALDLTDTV------EELIELILESG-HSRIPVYD-GD---------------LDNIIGIVHV 258 (429)
T ss_pred cCCcEeeeEeeecccEE-EEcCCCCH------HHHHHHHHhCC-CCeeeEEc-CC---------------CCcEEEEEEH
Confidence 57889999998743111 11112222 67777776666 78888733 11 1122233 33
Q ss_pred ccccCCccccccccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcchh
Q 004538 660 DDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTTV 736 (746)
Q Consensus 660 ~dl~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~~~ 736 (746)
+|+-....+.....+....+ ++|+.|++++++.++++.|++.+.+-..|+|+-|.+.|+||..|+++...-+..++
T Consensus 259 Kdll~~~~~~~~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de 334 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDE 334 (429)
T ss_pred HHHHHHHhcCccccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCc
Confidence 44321111110012222222 27889999999999999999999999999999999999999999999987654443
No 130
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.66 E-value=5.9e-05 Score=87.93 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred cccccccccC-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 671 MYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 671 ~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
...+++++|+ +++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...
T Consensus 244 ~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 244 QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 4577999999 89999999999999999999999999999998899999999999998654
No 131
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.63 E-value=0.00014 Score=68.26 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=46.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
.+.++++++++.++.+.|.+.+..++||+|++|+++|+||.+|++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 46789999999999999999999999999988999999999999987653
No 132
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00018 Score=63.17 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 56789999999999999999999999999988999999999999864
No 133
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00014 Score=81.42 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=67.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHH-------hhh--cCCCChHHHHHHHhh
Q 004538 442 IHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN-------FYK--KLNIEEGTYALLGAA 512 (746)
Q Consensus 442 ~~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~-------~~~--~~~~~p~~~AliGaa 512 (746)
++-+.+.+| +.|.+=.+.+.+.|.-.|---|++-.||+.+..+|+-=.. +++ -..-|-.-+.-+|+|
T Consensus 181 P~ivrl~TL----~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaA 256 (762)
T KOG0474|consen 181 PGIVRLRTL----IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAA 256 (762)
T ss_pred cceeehhhh----HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchH
Confidence 344445554 4688888888888999999999999999999999863211 111 013456678899999
Q ss_pred hhhhccccchhhhhhHHHhhcC
Q 004538 513 SFLGGSMRMTVSLCVIMVEITN 534 (746)
Q Consensus 513 A~l~g~~r~pis~~vi~~ElTg 534 (746)
|..+++.|+|+..+++.+|=--
T Consensus 257 AGVaAAF~APvGGvLFaLEE~a 278 (762)
T KOG0474|consen 257 AGVAAAFRAPVGGVLFALEEGA 278 (762)
T ss_pred HhHHHHhCCCccceEEEechhh
Confidence 9999999999999999999543
No 134
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.53 E-value=0.00024 Score=65.54 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=45.8
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 45789999999999999999999999999998899999999999997554
No 135
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.50 E-value=0.00016 Score=78.59 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred ccccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 672 YIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 672 ~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++++|++ ++.++++++|+.++.++|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 4678999997 8899999999999999999999988888998899999999999987654
No 136
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.49 E-value=0.00016 Score=78.49 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=54.3
Q ss_pred ccccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 672 YIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 672 ~~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
..+++++|+++ +.++++++++.++.+.|++.+..++||+|++|+++|+||.+|+.+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 35799999998 899999999999999999999999999998899999999999987654
No 137
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00042 Score=62.02 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=45.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 46789999999999999999999999999988999999999999886543
No 138
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00046 Score=61.57 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=45.6
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+++.++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 46778999999999999999999999999998899999999999987643
No 139
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.38 E-value=0.00041 Score=62.05 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=45.7
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
+.+.++++++++.++.++|++.+.+++||+|++++++|+||++|+.+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFD 51 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhc
Confidence 356789999999999999999999999999988999999999999876543
No 140
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.37 E-value=0.00046 Score=61.11 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
++.++++++++.++++.|++.+.+++||+|++|+++|++|++|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 567899999999999999999999999999889999999999998753
No 141
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.36 E-value=0.00048 Score=61.98 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++++++++.++.+.|++.+.+.+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 3578999999999999999999999999998899999999999988764
No 142
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.35 E-value=0.00054 Score=61.78 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+..++||+|++|+++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999998899999999999988654
No 143
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00053 Score=62.61 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=46.3
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
+++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 52 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARP 52 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcc
Confidence 567899999999999999999999999999988999999999999876543
No 144
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.33 E-value=0.00063 Score=61.84 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 4578999999999999999999999999998899999999999998764
No 145
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00063 Score=60.73 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.+.|.+.+..++||+|++++++|++|++|+.+...+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 45689999999999999999999999999988999999999999986553
No 146
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.31 E-value=0.00043 Score=78.89 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=55.6
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 671 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 671 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
..++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+.+...+
T Consensus 333 ~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 333 KNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred ccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999988999999999999986543
No 147
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.29 E-value=0.00062 Score=61.19 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.|.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 36789999999999999999999999999988999999999999874
No 148
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.27 E-value=0.00065 Score=61.34 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=44.1
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+.++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+.+...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 458899999999999999999999999998899999999999987653
No 149
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00053 Score=63.10 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 4678999999999999999999999999998899999999999988664
No 150
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.25 E-value=0.00065 Score=63.71 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=45.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 4568999999999999999999999999999899999999999998764
No 151
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00083 Score=61.88 Aligned_cols=48 Identities=29% Similarity=0.435 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
++.++.+++++.++.++|.+.+.+.+||+|++++++|+||++|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 356899999999999999999999999999889999999999998654
No 152
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.24 E-value=0.00044 Score=72.92 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=54.2
Q ss_pred ccccccccCCC-CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 672 YIDLGPFLNPS-PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 672 ~~dl~~im~~~-p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 46789999988 899999999999999999999999999998899999999999988653
No 153
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.24 E-value=0.00066 Score=63.30 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+++.++.+++++.++.+.|.+.+.+++||+|++++++|+||++|+.+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 45678999999999999999999999999998899999999999987543
No 154
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00085 Score=60.44 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=44.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~ 730 (746)
.+.++++++++.++.+.|++.+.+++||+|++ ++++|++|.+|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVV 51 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHH
Confidence 46789999999999999999999999999987 89999999999988643
No 155
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00072 Score=60.84 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+..++++++++.++.+.|.+.+ .+++||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 3468999999999999997775 899999998899999999999988654
No 156
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00075 Score=61.68 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=45.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.++|.+.+.+.+||+|++ ++++|+|+++|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 46789999999999999999999999999987 999999999999987653
No 157
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00082 Score=61.90 Aligned_cols=46 Identities=37% Similarity=0.602 Sum_probs=42.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
++.++.+++++.++.+.|++.+.+++||+|++|+++|+||.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999999999999999998899999999999985
No 158
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00067 Score=60.82 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=44.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 5678999999999999999999999999998899999999999987653
No 159
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00074 Score=60.29 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=44.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++.+++++.++.+.|.+.+.+++||+|++++++|+|+.+|+.+...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA 50 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence 4568999999999999999999999999998899999999999988654
No 160
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.20 E-value=0.00086 Score=59.73 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=44.7
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+++.++++++++.++.+.|.+.+.+++||+|+ ++++|+++++|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA 49 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence 45778999999999999999999999999998 99999999999987654
No 161
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00067 Score=62.97 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.+.|.+.+.+++||+|++++++|+|+++|+.+...+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 46789999999999999999999999999988999999999999986643
No 162
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.18 E-value=0.0014 Score=72.19 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=50.3
Q ss_pred cccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcC
Q 004538 675 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 675 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~ 732 (746)
+.+.+.+...++++++++.+++.++.+.+.. +||+|++|+++|+||+.++++++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 304 LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 4445666677999999999999999999999 99999999999999999999988653
No 163
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.17 E-value=0.0012 Score=58.51 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=44.5
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+++.++++++++.++.+.|.+.+.+++||+|++++++|+||.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 3567899999999999999999999999999889999999999998754
No 164
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.00098 Score=59.71 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
.|.++.+++++.++.+.|.+.+.+++||+|++++++|++|++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA 49 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence 377899999999999999999999999999889999999999998753
No 165
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.00044 Score=77.10 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=55.1
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcC
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~ 732 (746)
..+.++++.+|++|++.+|+.+|++.|.+.|.+.+.|+|++++..||||++|+.+....+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~ 208 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD 208 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhc
Confidence 347788999999999999999999999999999999999999999999999999987653
No 166
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00079 Score=61.23 Aligned_cols=47 Identities=34% Similarity=0.595 Sum_probs=43.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.+.++++++++.++.+.|.+.+.+++||+|++++++|++|++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 56789999999999999999999999999988999999999999874
No 167
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.14 E-value=0.00076 Score=76.64 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=52.1
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+.++++|.++|.++++++++.++.++|++.+.+.+||+|++++++|+||.+|+..
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 46678899999999999999999999999999999999998899999999999854
No 168
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00096 Score=61.04 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+++||+|++ ++++|+||.+|+++...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence 35689999999999999999999999999987 89999999999988653
No 169
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.14 E-value=0.0013 Score=58.58 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+++||+|+ ++++|++|++|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~ 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999998 99999999999998654
No 170
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.051 Score=62.75 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=54.6
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC--CeEEEEEeHhHHhHhhhcC
Q 004538 671 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 671 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~--gklvGIITrkDLl~~~~~~ 732 (746)
..+.++++|.++...+..+++..|.-+......+|.+|+||+. .-++|.|.|+.|...+.++
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 3577999999999999999999999998888889999999864 4699999999999887653
No 171
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.13 E-value=0.0011 Score=58.84 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=44.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.+.|++.+.+++||+|+ ++++|++|++|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 3568999999999999999999999999998 999999999999987543
No 172
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.11 E-value=0.0014 Score=58.56 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.++|.+.+.+++||+|++ ++++|++|.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 45789999999999999999999999999988 999999999999987654
No 173
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.0015 Score=58.65 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.++++++++++.++.+.|.+.+.+++||+|++++++|++|.+|+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL 51 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence 4678999999999999999999999999998899999999999987654
No 174
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.07 E-value=0.0018 Score=58.20 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=49.5
Q ss_pred ccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 678 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 678 im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
.|.+.+.++.+++++.++..+|.+.+...+||++. ++++|+||.+|+.++.....
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG 58 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence 45588999999999999999999999999999987 58999999999999886543
No 175
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0016 Score=59.25 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=43.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|++.+.+++||+|+ ++++|++|++|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS 49 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence 4678999999999999999999999999998 99999999999987643
No 176
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0013 Score=59.77 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=44.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++.+++++.++.++|.+.+.+.+||+|++++++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 4678999999999999999999999999998899999999999988654
No 177
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.03 E-value=0.0018 Score=56.97 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=45.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++++|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 45688999999999999999999999999988999999999999987654
No 178
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.02 E-value=0.0014 Score=59.44 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
++.++++++++.++.+.|.+.+.+++||+|++++++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 467899999999999999999999999999889999999999998754
No 179
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.02 E-value=0.0015 Score=58.15 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=43.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+...
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 45689999999999999999999999999988999999999999864
No 180
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0017 Score=57.96 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 4568999999999999999999999999998899999999999987643
No 181
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.98 E-value=0.0018 Score=58.59 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++.+++++.++.++|.+.+.+++||+|+ ++++|+++++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 4678999999999999999999999999998 99999999999988654
No 182
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0015 Score=61.81 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.9
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++++++++++++.++.+.|++.+...+||+|+ ++++|++|++|+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 35779999999999999999999999999998 99999999999988764
No 183
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.96 E-value=0.0022 Score=57.15 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=44.1
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|+.+...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVV 49 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHh
Confidence 35678999999999999999999999999998 99999999999987543
No 184
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.95 E-value=0.0027 Score=56.71 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.++++++++++.++.+.|.+.+.+++||+|+ ++++|++|.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999998 89999999999987654
No 185
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.95 E-value=0.0014 Score=73.40 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=52.2
Q ss_pred cccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhh
Q 004538 673 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 730 (746)
Q Consensus 673 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~ 730 (746)
..++++|++ ++++++.+++++++.+++.+.+..++||.+++ ++++|+|+.||++.+..
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 468899997 67899999999999999999999999999864 79999999999997654
No 186
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0034 Score=69.93 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=50.6
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcC
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~ 732 (746)
++.+.+.+...+|++++++.+++..+.+.... +||||++|+++|+||+.++++.+.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 35556677778999999999999999997766 99999899999999999999988654
No 187
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0015 Score=69.59 Aligned_cols=54 Identities=33% Similarity=0.399 Sum_probs=49.2
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcc
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~ 734 (746)
..|+.|++.+++.+-+..|++.+-+--.|||+=|.+.|+||..|+++...-+..
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 568999999999999999999999999999999999999999999998765443
No 188
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.91 E-value=0.0025 Score=56.94 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=42.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+||++|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV 48 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 4678999999999999999999999999998 9999999999998543
No 189
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.91 E-value=0.0027 Score=56.60 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+++.++++++++.++.+.|.+.+.+++||+|+ ++++|+|+++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL 49 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence 45678999999999999999999999999998 9999999999998765
No 190
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.90 E-value=0.0014 Score=74.29 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=52.2
Q ss_pred cccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC---CeEEEEEeHhHHhHh
Q 004538 671 MYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLIE 728 (746)
Q Consensus 671 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~---gklvGIITrkDLl~~ 728 (746)
...+.++.|.++|.++++++++.++.++|++.+.+.+||+|++ ++++|+||++|+...
T Consensus 78 ~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 78 RVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred hhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 3455777888999999999999999999999999999999987 699999999999753
No 191
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.87 E-value=0.0018 Score=74.17 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=51.2
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
..++++|.+++.++++++++.++.++|++.+.+.+||+|++++++|+||++|+..
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 3467889999999999999999999999999999999998899999999999864
No 192
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.86 E-value=0.0023 Score=57.84 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=42.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|++.+ .+.+||+|+ |+++|+|+.+|+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 4568899999999999999887 899999999 99999999999987543
No 193
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.86 E-value=0.0032 Score=55.97 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=44.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
+..++++++++.++.+.|.+.+.+.+||+|+ ++++|++|++|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~ 50 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLAS 50 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhc
Confidence 3468999999999999999999999999998 999999999999987643
No 194
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.80 E-value=0.003 Score=55.58 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=42.6
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
++.++++++++.++.+.|++.+.+.+||+|+ ++++|++|.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~Giv~~~~l~~~~ 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED-GKLVGIITSRDVRRAH 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEehHHhhccc
Confidence 4678999999999999999999999999985 9999999999998743
No 195
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.79 E-value=0.0024 Score=68.22 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=52.2
Q ss_pred cccccccCC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhh
Q 004538 673 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 730 (746)
Q Consensus 673 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~ 730 (746)
..++++|++ ...+++++++++++.+.+++.+..++||++++ ++++|+|+.+|+++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 468899997 58899999999999999999999999999876 79999999999987553
No 196
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.77 E-value=0.0034 Score=56.11 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=42.3
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV 46 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence 35678999999999999999999999999998 99999999999873
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0024 Score=68.48 Aligned_cols=57 Identities=12% Similarity=0.346 Sum_probs=53.3
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
..++++|++.+++.+.+.+++++-+++++.....+||||++++++-+|+|.||.+..
T Consensus 171 ~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 171 LLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred chhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 457889999999999999999999999999999999999999999999999998764
No 198
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0035 Score=56.80 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=43.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|++|++|+.+...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence 4678999999999999999999999999998 99999999999987644
No 199
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.72 E-value=0.0044 Score=55.30 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=43.5
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 729 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~ 729 (746)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV 48 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 35678999999999999999999999999997 5999999999999865
No 200
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.68 E-value=0.0027 Score=56.56 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=38.8
Q ss_pred eecCCCCHHHHHHHHHHcC-----CCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 685 VVPEDMSLSKVYNLFRQLG-----LRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 685 tV~~~~sL~~a~~lf~~~g-----lr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
++.+++++.++.+.|.+.+ .+++||+|++++++|+||++|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~ 49 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA 49 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence 4678999999999999887 5789999988999999999999763
No 201
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.67 E-value=0.0042 Score=55.90 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=42.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCC---CCeEEEEEeHhHHhH
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLI 727 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~---~gklvGIITrkDLl~ 727 (746)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+|+.+|+..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 4678999999999999999999999999997 689999999999874
No 202
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.65 E-value=0.0044 Score=55.34 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=44.0
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
..++++++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK 52 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence 4578999999999999999999999999988999999999999987653
No 203
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.62 E-value=0.0055 Score=55.03 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=42.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
++.++++++++.++.+.|.+.+ .+.+||+|+ ++++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK-GRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-CcEEEEEeHHHHHHHHh
Confidence 4678999999999999999888 777888885 99999999999997654
No 204
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.60 E-value=0.0043 Score=55.04 Aligned_cols=48 Identities=25% Similarity=0.532 Sum_probs=43.4
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+.+.++++++++.++.+.|.+.+...+||+|++|+++|++|++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE 49 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence 356789999999999999999999999999988999999999998743
No 205
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.59 E-value=0.0052 Score=54.34 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=41.1
Q ss_pred eeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 684 YVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 684 ~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
.++++++++.++.+.|.+.+...+||+|+ ++++|+++.+|+.+.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 47899999999999999999999999998 999999999999864
No 206
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.52 E-value=0.0039 Score=71.34 Aligned_cols=55 Identities=16% Similarity=0.397 Sum_probs=49.2
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC---CeEEEEEeHhHHhH
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLI 727 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~---gklvGIITrkDLl~ 727 (746)
...++.|.++|+++++++++.++.++|++.+.+.+||+|++ ++++|+||.+|+..
T Consensus 96 k~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 96 KRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred cccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence 34566788899999999999999999999999999999873 79999999999863
No 207
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.47 E-value=0.0045 Score=70.31 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=50.4
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhH
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 727 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~ 727 (746)
.+.++++|.++|+++++++++.++.++|++.+.+++||+|+ ++++|+||.+|+..
T Consensus 87 ~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~ 141 (475)
T TIGR01303 87 FVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLG 141 (475)
T ss_pred hcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhc
Confidence 46677889999999999999999999999999999999986 89999999999853
No 208
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.41 E-value=0.0044 Score=70.93 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=46.9
Q ss_pred ccccccC---CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCC---CCeEEEEEeHhHHhH
Q 004538 674 DLGPFLN---PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLI 727 (746)
Q Consensus 674 dl~~im~---~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~---~gklvGIITrkDLl~ 727 (746)
.++++|. .+|.++++++++.++.++|.+.+.+.+||+|+ +++++|+||.+|+..
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI 154 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence 3555665 45679999999999999999999999999996 589999999999864
No 209
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.34 E-value=0.011 Score=52.36 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=41.7
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++.+++++.++.+.|.+.+.+.+||+|++++++|+++++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 4578899999999999999999999999988999999999999754
No 210
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.30 E-value=0.0098 Score=52.47 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=42.3
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+++.++++++++.++.+.|.+.+...+||+|+ ++++|+++.+|+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~ 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc
Confidence 45678999999999999999989889999998 999999999998753
No 211
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.29 E-value=0.012 Score=52.47 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=41.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
...++++++++.++.+.|.+.+...++|.++ ++++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER-GELVGLLTFREVLQAMA 49 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHHHHHHH
Confidence 3568999999999999999888888877765 99999999999997754
No 212
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.26 E-value=0.0077 Score=69.06 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=47.0
Q ss_pred ccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCC---CCeEEEEEeHhHHhH
Q 004538 676 GPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLI 727 (746)
Q Consensus 676 ~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~---~gklvGIITrkDLl~ 727 (746)
+.-|.++|+++++++++.++.++|.+.+.+.+||+|+ +++++|+||.+|+..
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 4447789999999999999999999999999999987 379999999999864
No 213
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.23 E-value=0.0079 Score=53.54 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=42.1
Q ss_pred eeecCCCCHHHHHHHHHHcCCCEEEEeCC---CCeEEEEEeHhHHhHhh
Q 004538 684 YVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLIED 729 (746)
Q Consensus 684 ~tV~~~~sL~~a~~lf~~~glr~lpVVd~---~gklvGIITrkDLl~~~ 729 (746)
..+++++++.++.+.+.+.+.+.+||+|+ +++++|+|+++|+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 47899999999999999999999999998 69999999999998755
No 214
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.20 E-value=0.013 Score=64.76 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=48.0
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCc
Q 004538 683 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 683 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~ 733 (746)
.+++.++.+|.+++..+...+.++++|||++|+++|+||-.|++.++....
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999999999999987543
No 215
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.07 E-value=0.017 Score=54.20 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred ccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC
Q 004538 678 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 713 (746)
Q Consensus 678 im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 713 (746)
.|.+++.++++++++.+|+++|.+.+.+++||+|++
T Consensus 83 ~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 83 GQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 345678899999999999999999999999999864
No 216
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=95.85 E-value=0.014 Score=66.45 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=49.8
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHH-----cCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQ-----LGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~-----~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
..++++|+++..++++++++.++.+.|++ .+...+||+|++++++|+|+.+|++..
T Consensus 131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a 191 (449)
T TIGR00400 131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA 191 (449)
T ss_pred chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC
Confidence 34889999999999999999999999986 456789999988999999999999764
No 217
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.039 Score=55.45 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=51.8
Q ss_pred cccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhcCcch
Q 004538 673 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDSTT 735 (746)
Q Consensus 673 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~~~~~ 735 (746)
.+++++. ++...|++.-.+.+.++-||.....-..|+|+-|-+-|.||-.|++....-+.++
T Consensus 133 F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIED 194 (293)
T COG4535 133 FDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIED 194 (293)
T ss_pred ccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccc
Confidence 4555544 5567899999999999999999998889999999999999999999987655443
No 218
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.17 E-value=0.022 Score=60.31 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.9
Q ss_pred ccccccccC--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 672 YIDLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 672 ~~dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
.+.++|+|. ..+.++.+++++++-+++-++.|..++||+|+..+++|+||-+|+.....
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP 247 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC
Confidence 355788898 56789999999999999999999999999999999999999999987643
No 219
>PRK11573 hypothetical protein; Provisional
Probab=94.61 E-value=0.075 Score=59.68 Aligned_cols=58 Identities=5% Similarity=0.070 Sum_probs=50.7
Q ss_pred cccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhh
Q 004538 673 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 730 (746)
Q Consensus 673 ~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~ 730 (746)
..++++|.+. ..+++.+++++++.+++++.+..++||.+++ ++++|+|+.||+++...
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 4578888853 5789999999999999999999999999765 89999999999997643
No 220
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=93.14 E-value=0.19 Score=56.81 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=52.5
Q ss_pred cccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeC-CCCeEEEEEeHhHHhHhhhcC
Q 004538 673 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVP-RASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 673 ~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd-~~gklvGIITrkDLl~~~~~~ 732 (746)
..++++|++. ...++.+.+.+++.+.+.+.+..++||.+ +.+.++|+|+.||++++..+.
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 4578889863 56888999999999999999999999999 448999999999999987755
No 221
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.04 E-value=0.16 Score=56.31 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=46.4
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
++.+ +.+...++++++++.+++....+.+.. ++|+|+ |+++|+|++.++++++.+
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 3555 566677999999999999998887765 889987 999999999999988753
No 222
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=90.56 E-value=0.36 Score=54.39 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=49.5
Q ss_pred ccccccCCCCeeecCCCCHHHHHHHHHHcCC-----CEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 674 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGL-----RHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 674 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl-----r~lpVVd~~gklvGIITrkDLl~~ 728 (746)
....+|++..++++++.++.++...+|+.+- ..+.|+|+++|++|+|+-++++..
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a 192 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA 192 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC
Confidence 3677899999999999999999999997664 789999999999999999999854
No 223
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=89.30 E-value=0.49 Score=52.48 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 682 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 682 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
....+.+++++.+|+++|+..+...+||||+.++.+|++++.|+.....+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 46789999999999999999999999999999999999999999877654
No 224
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=88.98 E-value=0.23 Score=50.12 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=52.7
Q ss_pred cccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhhcCcc
Q 004538 673 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 673 ~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~~~~~ 734 (746)
+.++++|-+. ..+++.+.++.+....+.+....++||+.++ +.+.||+..|||++++....+
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~ 131 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE 131 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc
Confidence 3477888754 5789999999999999999999999999654 789999999999998776543
No 225
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.50 E-value=0.77 Score=48.76 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=45.8
Q ss_pred ccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 678 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 678 im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
.+++.+.++.+|+++.+.....++.+. .++|+|++++++|+|++.++++++..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 456677899999999999998887766 58899999999999999999998754
No 226
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.62 E-value=1.6 Score=45.16 Aligned_cols=43 Identities=30% Similarity=0.317 Sum_probs=37.1
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHh
Q 004538 686 VPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 728 (746)
Q Consensus 686 V~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~ 728 (746)
+...+...+++..|...+...+||+|++|+++|.||+.|+.+.
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 4455566778889999999999999999999999999999864
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=84.20 E-value=0.73 Score=50.12 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=42.5
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCC---CeEEEEEeHhHHhHh
Q 004538 681 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLIE 728 (746)
Q Consensus 681 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~---gklvGIITrkDLl~~ 728 (746)
.+|+.++|+.++.++.+.++..|...+||..+. .|++|+||.+|+--.
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence 468899999999999999999999999999643 799999999997533
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=83.32 E-value=2.6 Score=47.16 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=46.6
Q ss_pred cccccccCCCCe---eecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 673 IDLGPFLNPSPY---VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 673 ~dl~~im~~~p~---tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
....++|.+.+. ...++.+..++++.|++.+.+.++|+|+++++.|+|+.+|+.+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh
Confidence 345566654332 3447778999999999999999999999999999999999986543
No 229
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=79.05 E-value=5 Score=44.35 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=45.6
Q ss_pred cCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhhc
Q 004538 679 LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 731 (746)
Q Consensus 679 m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~~ 731 (746)
|...+.+..++.+..++++.|+..+.+.+.|+|+++++.|+|+.+++.++...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 300 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK 300 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc
Confidence 44555567788899999999999999999999999999999999999876543
No 230
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=78.87 E-value=2 Score=46.49 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred ccccccccCCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeCCC-CeEEEEEeHhHHhHhhhcCc
Q 004538 672 YIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGEDS 733 (746)
Q Consensus 672 ~~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~-gklvGIITrkDLl~~~~~~~ 733 (746)
.++|+|+|.+. ...+..|++.+++++...+.-..++||-.++ +.++||++.||+++++.+..
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 35688888753 5689999999999999999999999998654 67999999999999998765
No 231
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=76.22 E-value=3.7 Score=31.60 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.4
Q ss_pred CcceEEeeeeHHHHHHHHh
Q 004538 602 GERLVIGLVLRSHLLVLLQ 620 (746)
Q Consensus 602 ~~~~l~GlIlR~~L~~lL~ 620 (746)
+++.++|+++++++++.+.
T Consensus 38 ~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 38 EDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp TTSBEEEEEEHHHHHHHHH
T ss_pred cCCEEEEEEEHHHHHhhhh
Confidence 4688999999999987653
No 232
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=67.05 E-value=2.4e+02 Score=33.75 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcccCcccC
Q 004538 171 LIGKIFGSIGSVGGGLALGK 190 (746)
Q Consensus 171 ~~~K~~~~~~sv~sG~s~G~ 190 (746)
+..-++|...+.+.|.++=|
T Consensus 458 l~g~iiG~mv~~~m~gpi~k 477 (631)
T PRK09765 458 LLGAILGFMCSFDLGGPVNK 477 (631)
T ss_pred HHHHHHHHHHHHcCCCccch
Confidence 44555666666666666655
No 233
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=56.18 E-value=8.9 Score=25.10 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.0
Q ss_pred hhhhHHHHhhhhhhhhhhcCcch
Q 004538 228 DRRDLVTCGCAAGVAAAFRAPVG 250 (746)
Q Consensus 228 ~~r~lv~~GaAAgvaaaF~APig 250 (746)
.||+|+-.+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48999999999999999988764
No 234
>PRK02509 hypothetical protein; Provisional
Probab=51.71 E-value=4.2e+02 Score=33.09 Aligned_cols=20 Identities=10% Similarity=0.391 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004538 318 ELLPMAVIGVIGGLLGALFN 337 (746)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~ 337 (746)
.+|...++.+++.+++.+|.
T Consensus 326 ~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 326 QLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677778888877777765
No 235
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=35.58 E-value=21 Score=31.82 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=18.8
Q ss_pred ccHhhhcccceeeeccCCCcceEEeeeeHHHHHHHHhccc
Q 004538 584 MTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKV 623 (746)
Q Consensus 584 l~v~dVM~~~vVv~~~~~~~~~l~GlIlR~~L~~lL~~~~ 623 (746)
.+++|+|.+++. .+.++..+ .++..+|.+..
T Consensus 58 ~~v~dim~~~~~---~v~~~~~l------~~a~~~~~~~~ 88 (113)
T cd04597 58 PRVRDVINRKPV---TARPNDPL------REALNLMHEHN 88 (113)
T ss_pred hhHHHhcCCCCC---EECCcCcH------HHHHHHHHHcC
Confidence 678999987654 22233333 56667776544
No 236
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.35 E-value=49 Score=30.51 Aligned_cols=17 Identities=24% Similarity=0.682 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004538 320 LPMAVIGVIGGLLGALF 336 (746)
Q Consensus 320 ~~~~~lGv~~Gl~g~~f 336 (746)
+..+++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 36778899999988765
No 237
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=30.45 E-value=36 Score=24.98 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=10.8
Q ss_pred ChhhhhhHH--HHhhhhhhhhh
Q 004538 225 SDRDRRDLV--TCGCAAGVAAA 244 (746)
Q Consensus 225 ~~~~~r~lv--~~GaAAgvaaa 244 (746)
.+..||+|+ +.+++++++++
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 356788877 55555555554
No 238
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=28.58 E-value=1.2e+03 Score=28.70 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccch----------hhhhhHHHhhcCCcchHHHHHHHHHHH
Q 004538 480 IGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT----------VSLCVIMVEITNNLKFLPLIMLVLLIS 549 (746)
Q Consensus 480 iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~p----------is~~vi~~ElTg~~~~l~pimia~~va 549 (746)
+||+.|...|.+...-. ...|....+.|-++++||.+|-. ++.+++.+=..++..+.. .+.-+++|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~---~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia 272 (764)
T TIGR02865 197 AGAAGGVVIGVILGLAN---NANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIA 272 (764)
T ss_pred HhHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHH
Confidence 47777888777765433 33455556667777888888632 222233332223333322 23344555
Q ss_pred HHHHhhhCcchhHHHH
Q 004538 550 KAVGDAFSEGLYEEQA 565 (746)
Q Consensus 550 ~~v~~~~~~~iY~~~l 565 (746)
..+--.++..+|+..-
T Consensus 273 ~~lFll~P~~~~~~~~ 288 (764)
T TIGR02865 273 TLLFLLIPNKIYKKLE 288 (764)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 5554444777777553
No 239
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=24.83 E-value=1.9e+02 Score=34.72 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=16.6
Q ss_pred hhhHHHHhhhhhhhhhhcC
Q 004538 229 RRDLVTCGCAAGVAAAFRA 247 (746)
Q Consensus 229 ~r~lv~~GaAAgvaaaF~A 247 (746)
.+++++.|++--+++.|++
T Consensus 362 nqELiAlG~~Ni~sSff~~ 380 (665)
T KOG0236|consen 362 NQELIALGISNILSSFFGC 380 (665)
T ss_pred ChHHHHHHHHHHhhhhhce
Confidence 5789999999999999983
No 240
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=23.61 E-value=1.1e+02 Score=27.42 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhhhccccc
Q 004538 475 VPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRM 521 (746)
Q Consensus 475 ~Psl~iGa~~G~l~g~~~~~~~~~~~~~p~~~AliGaaA~l~g~~r~ 521 (746)
+||+..|..+|.++|..-.....+. -.-..+++.|.+++++|++-+
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~-~~~~~~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDK-KGGSLVALGGTSAALLGVMGQ 73 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCC-CcCchhHHHHHHHHHHHHHhh
Confidence 5999999999998887655443211 112345565567777777643
No 241
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=23.45 E-value=1.2e+02 Score=34.98 Aligned_cols=57 Identities=26% Similarity=0.194 Sum_probs=44.2
Q ss_pred ccccccccCCCCeeecCCCCHHHHHHHHHHcCCCEEEEeCCCCeEEEEEeHhHHhHhhh
Q 004538 672 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 730 (746)
Q Consensus 672 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~gklvGIITrkDLl~~~~ 730 (746)
..++..++.+.-..+++++++.+..+.|++... |+.|+.+...-++++|..|+ ....
T Consensus 272 ~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 272 PLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRNGHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred cccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEecCCcceeeEeccch-hhhc
Confidence 345677777777889999999999999986665 55555555788999999998 5444
No 242
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.76 E-value=1.8e+02 Score=31.67 Aligned_cols=48 Identities=19% Similarity=0.093 Sum_probs=28.0
Q ss_pred cchhhhhhHHHhhcCCcc----hHHHHHHHHHHHHHHHhhhCcchhHHHHHh
Q 004538 520 RMTVSLCVIMVEITNNLK----FLPLIMLVLLISKAVGDAFSEGLYEEQAHL 567 (746)
Q Consensus 520 r~pis~~vi~~ElTg~~~----~l~pimia~~va~~v~~~~~~~iY~~~l~~ 567 (746)
...+...-++++.+++.. =+..+++.+.+|..+.-.+..+=|+.....
T Consensus 107 ~~~~~~~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~ 158 (332)
T COG4129 107 PITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELKLYR 158 (332)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHH
Confidence 334444445566665443 245578888899888887732225554433
No 243
>PRK01844 hypothetical protein; Provisional
Probab=20.24 E-value=2.4e+02 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004538 318 ELLPMAVIGVIGGLLGALFN 337 (746)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~ 337 (746)
-.+..+++++++|+++.+|.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455567888888887776
Done!