Query 004538
Match_columns 746
No_of_seqs 331 out of 2847
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:18:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004538.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1844-1848//hhsearch_pdb/004538hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 1.0 1 1 708.3 45.7 580 70-734 5-628 (632)
2 3nd0_A SLL0855 protein; CLC fa 1.0 1 1 569.7 43.7 440 45-568 2-444 (466)
3 1ots_A Voltage-gated CLC-type 1.0 1 1 555.2 45.1 415 73-568 33-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 1.0 1 1 548.7 46.4 411 75-567 19-436 (446)
5 3org_A CMCLC; transporter, tra 1.0 1 1 135.4 18.0 192 312-556 4-211 (632)
6 2d4z_A Chloride channel protei 1.0 1 1 129.8 9.2 63 669-732 184-247 (250)
7 4esy_A CBS domain containing m 1.0 1 1 116.0 6.9 128 579-734 13-165 (170)
8 4ene_A CLC-EC1, H(+)/CL(-) exc 1.0 1 1 110.3 18.5 105 453-561 112-224 (446)
9 1ots_A Voltage-gated CLC-type 1.0 1 1 109.5 18.9 190 316-561 33-239 (465)
10 3pc3_A CG1753, isoform A; CBS, 1.0 1 1 107.9 5.2 149 559-736 359-516 (527)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=708.29 Aligned_cols=580 Identities=24% Similarity=0.398 Sum_probs=429.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 46588999-99999999999999999999999977999999987543345699999999999999988755015555688
Q 004538 70 YSVVVKWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGS 148 (746)
Q Consensus 70 ~~~~~~w~-~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 148 (746)
.| ..||+ +++++|+++|+++++++..++++++++.+.. +..++ ..+|+.|+.+++++++++++++++++|.++||
T Consensus 5 ~~-~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 80 (632)
T 3org_A 5 MY-LLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-RLAGR--FAGYILYVVSGVALCLLSTFWCAVLSTEAEGS 80 (632)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBC
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78-9999999999999999999999999999999999999-97425--47899999999999999999999618766789
Q ss_pred CHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCC-CCCC
Q ss_conf 8676878541445--555135779999999989873046766673249989999999741048632110010001-3689
Q 004538 149 GIPEIKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ-VFRS 225 (746)
Q Consensus 149 Gipev~~~l~g~~--~~~~l~~~~l~~k~~~~i~si~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~~~~~~~~-~f~~ 225 (746)
||||++++++|.. .++++++|+++.|++++++++++|+|+|||||++|+||++|+.+++. ++++ .++|
T Consensus 81 GIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~ 151 (632)
T 3org_A 81 GLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTD 151 (632)
T ss_dssp SHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHS
T ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH---------HHHCCCCCC
T ss_conf 98999999927421245535299999999999999953877666542999999999987420---------121133589
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 44335599884322335440376101456653300012345679999999999999998542212797544689860786
Q 004538 226 DRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIW 305 (746)
Q Consensus 226 ~~~~r~li~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~ia~~~~~~~~~~~~~g~~~~fg~~~~~~f 305 (746)
++++|++++||+|||+||+|||||||++|++||++++|+.+.+|+++++|.+++++++.+... ...+..|+. .|
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~ 225 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NF 225 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC----CC
T ss_conf 999999999898887899838840869999999888876877878999999999999996267--652011466----55
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33788875002349899999999998889998668999999998731358503788999999999998720112234799
Q 004538 306 DISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSP 385 (746)
Q Consensus 306 ~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~~c~~ 385 (746)
+. ..++++.++ +++++|+++|++|++|+ +++.++.+++.++..+.+|++++++++++++.+. .|..
T Consensus 226 ~~---~~~~~~~~l-~~~~lGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~p~~----- 291 (632)
T 3org_A 226 DA---SDVSRTQTL-LYAILGALMGVLGALFI---RCVRSIYELRMRHYPGTNRYFLVGVVALFASALQ--YPFR----- 291 (632)
T ss_dssp ------CCCCSCTH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHSSTTCCTHHHHHHHHHHHHHHT--TTC------
T ss_pred CC---CCCCCHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHH-----
T ss_conf 54---577768999-99999999999999999---9999999999986434348999999999999999--8787-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999988778878999988776311001599652023564206907999987501265---63137899999999999999
Q 004538 386 CPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI---HEYSAQSLLTFLVMFYTLAV 462 (746)
Q Consensus 386 ~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~---~~~~~~~L~~~~~~k~~~t~ 462 (746)
.| . + ++++.++.+|+..+. +.+.+..++++++.|+++|+
T Consensus 292 ---------------~g-------------~-~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~ 333 (632)
T 3org_A 292 ---------------LF-------------A-L---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVA 333 (632)
T ss_dssp -------------------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHH
T ss_pred ---------------HC-------------C-C---------CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---------------54-------------8-7---------67999999972786323453038999999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77236667443116999989887899999997420278775899999865421011122246545787432886328899
Q 004538 463 VTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLI 542 (746)
Q Consensus 463 ~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pi 542 (746)
+|+|+|+|||+|+|++++||++|+++|.+++.++|. .++|+.||++||||+++|++|+|+++ +|++|+||++++++|+
T Consensus 334 ~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~-~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl 411 (632)
T 3org_A 334 LSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGN-AIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPV 411 (632)
T ss_dssp HHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHH
T ss_conf 998289860100788999999999999999996776-56528999999999999999879999-9999992985679999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHCC--CCEEEECCCCCCCEEEEEEEHHHHHHHHH
Q ss_conf 9999999999852076536999985088887784023310152864305--66366316889624785002999999986
Q 004538 543 MLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACG--AQKVIDHSRNGERLVIGLVLRSHLLVLLQ 620 (746)
Q Consensus 543 mia~~ia~~v~~~~~~~iy~~~l~~k~~p~L~~~~~~~l~~l~v~diMs--~~vVid~~~~~~~~l~GlI~R~~l~~lL~ 620 (746)
|+++++|+++++.+++|+||.+++.|++|++++..+...++++|+|+|+ ++++ .+.++.++ +|+...++
T Consensus 412 ~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~---~v~~~~t~------~e~~~~~~ 482 (632)
T 3org_A 412 LISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEP---HLFPDSEP------QHIKGILE 482 (632)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSC---CBCSSSCH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCE---EECCCCCH------HHHHHHHH
T ss_conf 9999999999998478787899986489852233444202576999960579855---85699949------99999997
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCC----CC-------CCCCCCCC----C-CC----------CCC--
Q ss_conf -1443557998778889988864443210---0478----78-------88753334----4-77----------434--
Q 004538 621 -SKVDFQHSPLPCDTRGGSKPISHSFSEF---VKPA----SS-------KGLSIDDI----H-LS----------SDD-- 668 (746)
Q Consensus 621 -~~~~~~~~pv~~~~~~~~~~~~~~~~~~---~~~~----~~-------~gi~i~di----~-l~----------~~~-- 668 (746)
++. +...||+.+ ++...++...-+.. .+.. +. .....+++ + .. ..+
T Consensus 483 ~~~~-~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 560 (632)
T 3org_A 483 KFPN-RLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRT 560 (632)
T ss_dssp HSTT-CCEECBBCT-TCBBCCEESHHHHTTTTTTC---------------------------------------------
T ss_pred HCCC-CCEEEEEEC-CCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCHHHHCCCC
T ss_conf 3589-656999905-99699998899999999987551425455445110368999975404578888431012312560
Q ss_pred ---CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCC
Q ss_conf ---344334213457898042699999999999998499898995799908999838677576305862
Q 004538 669 ---MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 669 ---~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~lvGIITr~DL~~~~~~~~~ 734 (746)
.+...+++++|+++|.+|++++++.++.++|.+++.+++||+| +|+++||||++|+++++.+..+
T Consensus 561 ~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve-~G~lvGIVT~~Dll~~~~~~~~ 628 (632)
T 3org_A 561 ATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE-RGKLVGIVEREDVAYGYSNSLE 628 (632)
T ss_dssp ----------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE-TTEEEEEEEGGGTEECCCC---
T ss_pred EEEECCCCCCCHHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
T ss_conf 3761364324201057872446888599999999856887799988-9989999754467988734478
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=1.00 E-value=1 Score=569.73 Aligned_cols=440 Identities=21% Similarity=0.355 Sum_probs=355.0
Q ss_pred CCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76620012067899997405541134658899999999999999999999999999977999999987543345699999
Q 004538 45 SLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYI 124 (746)
Q Consensus 45 s~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (746)
..|||+. |+.+.++.+++.+....+..+..++.++++|+++|+++.+|+..+++++++++..... ...+++..|+.++
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ 79 (466)
T 3nd0_A 2 AADFETS-NRRWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQI-LAPIPPLAWLVTA 79 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTSCTHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHH
T ss_conf 7517888-8789999999999873242999999999999999999999999999999999998744-0224179999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999998875501555568886768785414455551357799999999898730467666732499899999997
Q 004538 125 LINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASL 204 (746)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~k~~~~i~si~sG~svG~EGP~vhiGa~igs~ 204 (746)
..+..++.++++++++++|+++||||||+++.+++.+ +..+.|+++.|++++++++++|+|+|||||++|+|+++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999999999777767899899999981888--87528999999999999995587777765699999999999
Q ss_pred HHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 4104863211001000136894433559988432233544037610145665330001234--56799999999999999
Q 004538 205 LGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVV 282 (746)
Q Consensus 205 l~~~~~~~~~~~~~~~~~f~~~~~~r~li~~GaAAgvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~ia~~~~ 282 (746)
++| +++. +++|+|++++||+|||+||+||||++|++|++||+.++|+. ..+|++++++.++++++
T Consensus 158 l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-----------HCCC--CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998-----------8099--866899999999999999994882687899987531435089999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98542212797544689860786337888750023498999999999988899986689999999987313585037889
Q 004538 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (746)
Q Consensus 283 ~~~~~~~~~g~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (746)
+.+ +++++ .|+++. ...++..|+++++++|+++|++|.+|+ +.+.+..+++.+.+ +..++.+
T Consensus 225 ~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~---~~~~~~~~~~~~~~-~~~~~~~ 286 (466)
T 3nd0_A 225 RMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFN---RGLFKVLDWFDRLP-PLATKWK 286 (466)
T ss_dssp HHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCC-HHHHHHH
T ss_pred HHH-----------CCCCC--CEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCC-CCCHHHH
T ss_conf 997-----------58887--130577-787899999999999999999999999---99999999998705-4647999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 99999999998720112234799999988778878999988776311001599652023564206907999987501265
Q 004538 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (746)
Q Consensus 363 ~~~~~~~~~~i~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (746)
+.+++++++++.++.|.. .| .| | +.++.+++
T Consensus 287 ~~l~g~~~g~l~~~~p~~--------------------~G-----------~G--~------------~~i~~~~~---- 317 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL--------------------TD-----------GG--D------------NAVLWAFN---- 317 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC--------------------SS-----------SS--H------------HHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHH--------------------CC-----------CC--H------------HHHHHHHC----
T ss_conf 999999999999997877--------------------39-----------93--9------------99999984----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 63137899999999999999772366674431169999898878999999974202787758999998654210111222
Q 004538 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (746)
Q Consensus 443 ~~~~~~~L~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p 522 (746)
+++++..++.+++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|....+|+.||++||+|+++|++|+|
T Consensus 318 ~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aP 397 (466)
T 3nd0_A 318 SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAP 397 (466)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89519999999999999999998279987540578999999999999999986776556789999999999999998449
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHH
Q ss_conf 4654578743288632889999999999998520-765369999850
Q 004538 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLR 568 (746)
Q Consensus 523 is~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~k 568 (746)
+|+++|++|+||++++++|+|+++++|+++++.+ ++||||.++++-
T Consensus 398 lt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r~ 444 (466)
T 3nd0_A 398 LTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERT 444 (466)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999997876789999999999999999818998499999998
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=1.00 E-value=1 Score=555.18 Aligned_cols=415 Identities=26% Similarity=0.470 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 88999999999999999999999999999779999999875433456999999999999999887550155556888676
Q 004538 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (746)
Q Consensus 73 ~~~w~~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (746)
+..|++++++|+++|+++.+|+..+++++++++......... ....|+.++.++..+++++++++++++|.+.||||||
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADN-YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 999999999999999999999999999999999998640234-5618999999999999999999998586446999679
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHH
Q ss_conf 87854144555513577999999998987304676667324998999999974104863211001000136894433559
Q 004538 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (746)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~k~~~~i~si~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~~~~~~~~~f~~~~~~r~l 232 (746)
+++++++.+ +..++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. ++++|+|++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHH
T ss_pred HHHHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-----------HHCC-CCHHHHHHH
T ss_conf 999982899--88728999999999999995187767755299999999999999-----------8436-988999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
Q ss_conf 98843223354403761014566533000123456--7999999999999999854221279754468986078633788
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQL--MWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (746)
Q Consensus 233 i~~GaAAgvaaaF~APigGvLFalE~~~~~~~~~~--~~~~f~~~~ia~~~~~~~~~~~~~g~~~~fg~~~~~~f~~~~~ 310 (746)
++||+|||+||+||||++|++|++||+.++|+.+. .+++++++.+++++.+.+ +|+++ .|+++.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~- 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK- 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCC--EEECCC-
T ss_conf 9999999999997884599999999989860468899999999999999999998-----------59986--461477-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8750023498999999999988899986689999999987313-585-03788999999999998720112234799999
Q 004538 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGN-RVKIIEACVISVITSVISFGLPLLRKCSPCPE 388 (746)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~p~~~~c~~~~~ 388 (746)
....++.++++++++|+++|++|.+|+ +.+.+..+++.+. +.+ ++++.++.++++++++++++.|..
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~-------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFN---KWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 777889999999999999999999999---999999999976346871657999999999999999986725--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98877887899998877631100159965202356420690799998750126563137899999999999999772366
Q 004538 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (746)
Q Consensus 389 ~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g 468 (746)
.| .|+ +.++.++++ ++++..++.+++.|+++|++|+|+|
T Consensus 313 ------------lG-----------~G~--------------~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG 351 (465)
T 1ots_A 313 ------------SG-----------GGF--------------NLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSG 351 (465)
T ss_dssp ------------SS-----------CST--------------THHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------CC-----------CHH--------------HHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------28-----------929--------------999999848----8349999999999999999998489
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67443116999989887899999997420278775899999865421011122246545787432886328899999999
Q 004538 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (746)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~i 548 (746)
+|||+|+|++++||++|+++|.+++.++|....+|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 352 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~i 431 (465)
T 1ots_A 352 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 431 (465)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 87122078899999999999999999777654567999999999999999878999999999993987799999999999
Q ss_pred HHHHHHHH-CCCHHHHHHHHH
Q ss_conf 99998520-765369999850
Q 004538 549 SKAVGDAF-SEGLYEEQAHLR 568 (746)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~k 568 (746)
|+++++.+ ++|+||.+++.+
T Consensus 432 A~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 432 ATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999967998599999998
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=1.00 E-value=1 Score=548.65 Aligned_cols=411 Identities=26% Similarity=0.470 Sum_probs=335.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999-9999999999999999999999997799999998754334569999999999999998875501555568886768
Q 004538 75 KWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (746)
Q Consensus 75 ~w~-~~~liGi~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (746)
+|+ .++++|+++|+++.+|+..+++++++++....+. ..+++..|+.+..++.+++.++++++++++|+++||||||+
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v 97 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 97 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999999999999999999999999999998751-21205999999999999999999999996764578997899
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHH-HH
Q ss_conf 78541445555135779999999989873046766673249989999999741048632110010001368944335-59
Q 004538 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR-DL 232 (746)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~k~~~~i~si~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~~~~~~~~~f~~~~~~r-~l 232 (746)
++++++.+ +..++|+++.|++++++++++|+|+|||||++|+|+++|++++| ++|. +++|+| ++
T Consensus 98 ~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~l 162 (446)
T 4ene_A 98 EGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTL 162 (446)
T ss_dssp HHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHH
T ss_pred HHHHHCCC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-----------HCCC--CHHHHHHHH
T ss_conf 99980887--65429999999999999995487667753098999999999998-----------8199--979999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
Q ss_conf 988432233544037610145665330001234--567999999999999999854221279754468986078633788
Q 004538 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (746)
Q Consensus 233 i~~GaAAgvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~ia~~~~~~~~~~~~~g~~~~fg~~~~~~f~~~~~ 310 (746)
++||+|||+||+||||++|++|++||+.++|+. +..|++++++.+++++++.+. ++++ .|+++.
T Consensus 163 l~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~~- 228 (446)
T 4ene_A 163 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVGK- 228 (446)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT-----------TTCC--SCCCCC-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CCCC--EEECCC-
T ss_conf 99899999999818962578998999874166567799999999999999999974-----------8886--032577-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8750023498999999999988899986689999999987313-585037-88999999999998720112234799999
Q 004538 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGNRVK-IIEACVISVITSVISFGLPLLRKCSPCPE 388 (746)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~~~~p~~~~c~~~~~ 388 (746)
...++..++++++++|+++|++|.+|+ +.+.+..+++.+. +.+..| +..+.+++++++.+.++.|..
T Consensus 229 ~~~~~~~~l~~~illGi~~Gl~g~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~-------- 297 (446)
T 4ene_A 229 LSDAPLNTLWLYLILGIIFGIFGPIFN---KWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 297 (446)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 776678999999999999999999999---999999999986133412699999999999999999983765--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98877887899998877631100159965202356420690799998750126563137899999999999999772366
Q 004538 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (746)
Q Consensus 389 ~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~g~g 468 (746)
.| .| |+ .++.+++ +++++..|+.+++.|+++|++|+|+|
T Consensus 298 ------------~G-----------~G--~~------------~i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG 336 (446)
T 4ene_A 298 ------------SG-----------GG--FN------------LIPIATA----GNFSMGMLVFIFVARVITTLLCFSSG 336 (446)
T ss_dssp ------------SS-----------CC--ST------------HHHHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------CC-----------CC--HH------------HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------28-----------93--99------------9999874----88419999999999999999998169
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67443116999989887899999997420278775899999865421011122246545787432886328899999999
Q 004538 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (746)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~i 548 (746)
+|||+|+|++++||++|+++|.+++.++|..+++|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 337 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~i 416 (446)
T 4ene_A 337 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 416 (446)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98632588899999999999999999677655678999999999999999740899999999997886689999999999
Q ss_pred HHHHHHHH-CCCHHHHHHHH
Q ss_conf 99998520-76536999985
Q 004538 549 SKAVGDAF-SEGLYEEQAHL 567 (746)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~ 567 (746)
|+++++.+ ++|+||.++++
T Consensus 417 a~~v~~~~~~~~iY~~~l~r 436 (446)
T 4ene_A 417 ATLLAQFTGGKPLYSAILAR 436 (446)
T ss_dssp HHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999984899869999999
No 5
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=135.36 Aligned_cols=192 Identities=10% Similarity=0.027 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC-C--CCHH-HHHHHHHHHHHHHHH-HHCCCCCCCC
Q ss_conf 750023498999999999988899986689999999987---313-5--8503-788999999999998-7201122347
Q 004538 312 EDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNY---LHK-K--GNRV-KIIEACVISVITSVI-SFGLPLLRKC 383 (746)
Q Consensus 312 ~~~~~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~---~~~-~--~~~~-~~~~~~~~~~~~~~i-~~~~p~~~~c 383 (746)
.+|....+.+.+++|++.|+++.+|. +.+.+..+.+ ... . .++. .++.+++.+++.+.+ .++.|..
T Consensus 4 ~~~~~r~~~~~~lvGi~~gl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a--- 77 (632)
T 3org_A 4 LMYLLRLVCFLTLLGVTAALFIFAVD---LAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEA--- 77 (632)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---
T ss_conf 57899999999999999999999999---999999999999999742547899999999999999999999618766---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHH
Q ss_conf 9999998877887899998877631100159965202356420690799998750126---5631378999999999999
Q 004538 384 SPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKT---IHEYSAQSLLTFLVMFYTL 460 (746)
Q Consensus 384 ~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~---~~~~~~~~L~~~~~~k~~~ 460 (746)
.|.|-++ ++..+++.. ....++ -.++.|++.
T Consensus 78 ------------------------------~GsGIp~------------v~~~l~g~~~~~~~~~~~----~~~~~K~~~ 111 (632)
T 3org_A 78 ------------------------------EGSGLPQ------------MKSILSGFYDKMRSALEL----RVLFAKALG 111 (632)
T ss_dssp ------------------------------CBCSHHH------------HHHHTTTTHHHHGGGGSH----HHHHHHHHH
T ss_pred ------------------------------CCCCHHH------------HHHHHHCCCCCCCCCCCH----HHHHHHHHH
T ss_conf ------------------------------7899899------------999992742124553529----999999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCC
Q ss_conf 997723666744311699998988789999--99974202787758999998654210111222465457874328-863
Q 004538 461 AVVTFGIAVPAGQFVPGIMIGSTYGRLVGM--FVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITN-NLK 537 (746)
Q Consensus 461 t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~--~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ElTg-~~~ 537 (746)
+.+|.|+|.+.|.-.|++.+||+.|..++. .+..... ...+......+||||.++++.++|++.+++.+|... +++
T Consensus 112 ~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~-~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~ 190 (632)
T 3org_A 112 LICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCT-DRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYL 190 (632)
T ss_dssp HHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999995387766654299999999998742012113358-9999999999898887899838840869999999888876
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q ss_conf --2889999999999998520
Q 004538 538 --FLPLIMLVLLISKAVGDAF 556 (746)
Q Consensus 538 --~l~pimia~~ia~~v~~~~ 556 (746)
.+.|.++++++|..+.+.+
T Consensus 191 ~~~~~~~~~as~~a~~v~~~~ 211 (632)
T 3org_A 191 VQAFWKGVLSALSGAIVYELL 211 (632)
T ss_dssp TTHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 877878999999999999996
No 6
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=1.00 E-value=1 Score=129.81 Aligned_cols=63 Identities=21% Similarity=0.418 Sum_probs=57.1
Q ss_pred CCCCCCCCC-CCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCC
Q ss_conf 344334213-4578980426999999999999984998989957999089998386775763058
Q 004538 669 MEMYIDLGP-FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 732 (746)
Q Consensus 669 ~~~~idl~~-im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~g~lvGIITr~DL~~~~~~~ 732 (746)
++..+|+++ +|+++|++|.+++||.+++.+|+++|++|+||+++ |+++|||||+|+++++...
T Consensus 184 l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVGIVTrkDl~kai~~~ 247 (250)
T 2d4z_A 184 KNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEGS 247 (250)
T ss_dssp TTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHC-
T ss_pred CCCEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHHHHHHH
T ss_conf 176641466411089818789995999999999839908999889-9799999999999999987
No 7
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=1.00 E-value=1 Score=115.99 Aligned_cols=128 Identities=14% Similarity=0.187 Sum_probs=93.5
Q ss_pred HHHCCCCHHHHCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3310152864305663663168896247850029999999861443557998778889988864443210047878887-
Q 004538 579 YKMRQMTAKEACGAQKVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGL- 657 (746)
Q Consensus 579 ~~l~~l~v~diMs~~vVid~~~~~~~~l~GlI~R~~l~~lL~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~gi- 657 (746)
..+++++|+|+|+++++ .+.++.++ .++...|.++. +...||. +++++..|+
T Consensus 13 ~~l~~~~V~diM~~~v~---~v~~~~tl------~~a~~~m~~~~-~~~~pVv-----------------d~~g~lvGii 65 (170)
T 4esy_A 13 RAIRQVPIRDILTSPVV---TVREDDTL------DAVAKTMLEHQ-IGCAPVV-----------------DQNGHLVGII 65 (170)
T ss_dssp HHHHTSBGGGGCCSCCC---CEETTSBH------HHHHHHHHHTT-CSEEEEE-----------------CTTSCEEEEE
T ss_pred HHHCCCCHHHHCCCCCC---EECCCCCH------HHHHHHHHHCC-CEEEEEE-----------------CCCCCEEEEE
T ss_conf 98759797995679983---78891939------99999999859-8199998-----------------4993388888
Q ss_pred CCCCCCC--CC----------------------CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 5333447--74----------------------34344334213457898042699999999999998499898995799
Q 004538 658 SIDDIHL--SS----------------------DDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 713 (746)
Q Consensus 658 ~i~di~l--~~----------------------~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 713 (746)
+..|+.. .+ .+.....++.++|+++++++.+++++.+++++|.+++++++||+|+
T Consensus 66 t~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~- 144 (170)
T 4esy_A 66 TESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD- 144 (170)
T ss_dssp EGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-
T ss_pred EHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC-
T ss_conf 7999998775124431134442023146677653133456512512568646784004999999999839958999999-
Q ss_pred CEEEEEEEHHHHHHHHHCCCC
Q ss_conf 908999838677576305862
Q 004538 714 SRVIGLITRKDLLIEDGEDST 734 (746)
Q Consensus 714 g~lvGIITr~DL~~~~~~~~~ 734 (746)
|+++||||++|+++++.++..
T Consensus 145 g~lvGivt~~Dil~~l~~~~~ 165 (170)
T 4esy_A 145 GVPVGIVTRRDLLKLLLLEES 165 (170)
T ss_dssp TEEEEEEEHHHHTTTSCCC--
T ss_pred CEEEEEEEHHHHHHHHHHCCC
T ss_conf 999999989999999973537
No 8
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=1.00 E-value=1 Score=110.32 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999772366674431169999898878999999974202787758-999998654210111222465457874
Q 004538 453 FLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEG-TYALLGAASFLGGSMRMTVSLCVIMVE 531 (746)
Q Consensus 453 ~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~-~~aliGaaa~l~g~~r~pis~~vi~~E 531 (746)
.+..|++.+.+|.++|.+-|.-.|+..+||+.|..++..++.- ..+.. ....+|+||-++++.++|+..+++.+|
T Consensus 112 ~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~~----~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE 187 (446)
T 4ene_A 112 VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLK----GDEARHTLLATGAAAGLAAAFNAPLAGILFIIE 187 (446)
T ss_dssp HHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCC----SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999999548766775309899999999999881999----799999999989999999981896257899899
Q ss_pred HC-CCCC----HHHHHHHHHHHHHHHHHHH--CCCHH
Q ss_conf 32-8863----2889999999999998520--76536
Q 004538 532 IT-NNLK----FLPLIMLVLLISKAVGDAF--SEGLY 561 (746)
Q Consensus 532 lT-g~~~----~l~pimia~~ia~~v~~~~--~~~iy 561 (746)
.. ++++ .+.|.++++++|..+++.+ +++.|
T Consensus 188 ~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~~ 224 (446)
T 4ene_A 188 EMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALI 224 (446)
T ss_dssp TTSCSSSCCCCCHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9874166567799999999999999999974888603
No 9
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=1.00 E-value=1 Score=109.52 Aligned_cols=190 Identities=16% Similarity=0.169 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC-CC---CCHHH--HHHHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf 23498999999999988899986689999999987---31-35---85037--889999999999987-20112234799
Q 004538 316 FEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNY---LH-KK---GNRVK--IIEACVISVITSVIS-FGLPLLRKCSP 385 (746)
Q Consensus 316 ~~~l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~---~~-~~---~~~~~--~~~~~~~~~~~~~i~-~~~p~~~~c~~ 385 (746)
...+...+++|+++|+.+.+|. +.++...+.+ .. .. .+++. ++.+.+.+++.+.+. ++.|..
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a----- 104 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFD---KGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEA----- 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-----
T ss_conf 9999999999999999999999---99999999999998640234561899999999999999999999858644-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998877887899998877631100159965202356420690799998750126563137899999999999999772
Q 004538 386 CPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTF 465 (746)
Q Consensus 386 ~~~~~~~~~~~~p~~~g~~g~~~~~~c~~G~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~L~~~~~~k~~~t~~t~ 465 (746)
.|.|.+ .++..+++.. .... .-.+..|++.+.+|.
T Consensus 105 ----------------------------~GsGip------------~v~~~l~~~~--~~~~---~r~~~~k~~~~~lti 139 (465)
T 1ots_A 105 ----------------------------GGSGIP------------EIEGALEDQR--PVRW---WRVLPVKFFGGLGTL 139 (465)
T ss_dssp ----------------------------SSCSHH------------HHHHHHTTCS--CCCH---HHHHHHHHHHHHHHH
T ss_pred ----------------------------CCCCHH------------HHHHHHHCCC--CCCC---HHHHHHHHHHHHHHH
T ss_conf ----------------------------699967------------9999982899--8872---899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCCC--H--HH
Q ss_conf 36667443116999989887899999997420278775899999865421011122246545787432-8863--2--88
Q 004538 466 GIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEIT-NNLK--F--LP 540 (746)
Q Consensus 466 g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~ElT-g~~~--~--l~ 540 (746)
++|.+.|...|+..+||+.|..++..++... ..+......+||||.++++.++|++.+++.+|.. ++++ . +.
T Consensus 140 ~sG~s~GrEGP~vqiGa~ig~~l~~~~~l~~---~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~ 216 (465)
T 1ots_A 140 GGGMVLGREGPTVQIGGNIGRMVLDIFRLKG---DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIK 216 (465)
T ss_dssp HTTCSCBSHHHHHHHHHHHHHHHHHHTTCCS---HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHH
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 5187767755299999999999999843698---8999999999999999999788459999999998986046889999
Q ss_pred HHHHHHHHHHHHHHHH--CCCHH
Q ss_conf 9999999999998520--76536
Q 004538 541 LIMLVLLISKAVGDAF--SEGLY 561 (746)
Q Consensus 541 pimia~~ia~~v~~~~--~~~iy 561 (746)
|.++++++|..+++.+ +++.|
T Consensus 217 ~~~~as~~a~~v~~~~~G~~~~f 239 (465)
T 1ots_A 217 AVFIGVIMSTIMYRIFNHEVALI 239 (465)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999999985998646
No 10
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=1.00 E-value=1 Score=107.89 Aligned_cols=149 Identities=11% Similarity=0.011 Sum_probs=104.1
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHCCCCEEEECCCCCC-CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 536999985088887784023310152864305663663168896-2478500299999998614435579987788899
Q 004538 559 GLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 637 (746)
Q Consensus 559 ~iy~~~l~~k~~p~L~~~~~~~l~~l~v~diMs~~vVid~~~~~~-~~l~GlI~R~~l~~lL~~~~~~~~~pv~~~~~~~ 637 (746)
-.++..+..+++.......+..+...+|+|+|+++++ .+.++ ..+ .++..+|.++. +...||
T Consensus 359 ~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~v---tv~~~~~tv------~ea~~~m~~~~-~~~lpV------- 421 (527)
T 3pc3_A 359 FVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPP---VILKSDATV------GEAIALMKKHR-VDQLPV------- 421 (527)
T ss_dssp TTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCS---CCEETTCBH------HHHHHHHHHHT-CSEEEE-------
T ss_pred HHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCE---EECCCCCCH------HHHHHHHHHCC-CCEEEE-------
T ss_conf 4058888755886554434565468869993768986---980897819------99999999859-986779-------
Q ss_pred CCCCCCCCCCCC-CCCCCCCC-CCCCCC--CCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 888644432100-47878887-533344--77434344334213457898042699999999999998499898995799
Q 004538 638 SKPISHSFSEFV-KPASSKGL-SIDDIH--LSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 713 (746)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~~gi-~i~di~--l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 713 (746)
++ ++++..|+ +.+|+. +.........++.++|++++.+|.+++++.++.++|.+.+. +||||++
T Consensus 422 ----------vd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~ 489 (527)
T 3pc3_A 422 ----------VDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKN 489 (527)
T ss_dssp ----------ECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEEC
T ss_pred ----------EECCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHCCE--EEEEECC
T ss_conf ----------9789997999988999999997056768880899951898188998919999999825888--9999178
Q ss_pred ----CEEEEEEEHHHHHHHHHCCCCHH
Q ss_conf ----90899983867757630586201
Q 004538 714 ----SRVIGLITRKDLLIEDGEDSTTV 736 (746)
Q Consensus 714 ----g~lvGIITr~DL~~~~~~~~~~~ 736 (746)
++++||||++|+++++.+.....
T Consensus 490 ~~~~g~lvGIVT~~Dll~~l~~~~~~~ 516 (527)
T 3pc3_A 490 PAGKVELKALATKLDVTTFIAAGKQKP 516 (527)
T ss_dssp SSSCEEEEEEEEHHHHHHHHHTCCCC-
T ss_pred CCCCCEEEEEEEHHHHHHHHHHCCCCC
T ss_conf 666882899987899999998445234
Done!