Query 004539
Match_columns 746
No_of_seqs 564 out of 3574
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 1E-104 2E-109 931.8 69.4 575 146-742 36-659 (659)
2 KOG0061 Transporter, ABC super 100.0 3E-103 6E-108 911.6 59.4 566 147-744 23-611 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-99 8E-104 883.9 63.3 570 149-743 17-615 (617)
4 PLN03140 ABC transporter G fam 100.0 5.6E-96 1E-100 914.1 66.2 568 144-744 862-1469(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 6.3E-95 1.4E-99 907.4 61.0 555 169-743 73-696 (1394)
6 PLN03140 ABC transporter G fam 100.0 1.1E-93 2.3E-98 893.6 59.5 555 168-741 176-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 7.5E-92 1.6E-96 879.7 62.8 560 149-742 759-1391(1394)
8 KOG0065 Pleiotropic drug resis 100.0 2.5E-92 5.5E-97 832.0 39.5 546 168-743 802-1385(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.2E-85 1.1E-89 770.1 46.0 554 169-741 127-730 (1391)
10 KOG0058 Peptide exporter, ABC 100.0 1.5E-61 3.3E-66 545.9 10.6 357 8-385 313-691 (716)
11 COG1126 GlnQ ABC-type polar am 100.0 1.1E-53 2.4E-58 421.6 24.9 218 149-384 2-224 (240)
12 KOG0055 Multidrug/pheromone ex 100.0 1.8E-52 3.9E-57 495.8 16.3 364 8-385 196-576 (1228)
13 COG1125 OpuBA ABC-type proline 100.0 1.8E-50 3.8E-55 406.0 22.3 220 149-385 1-225 (309)
14 COG2274 SunT ABC-type bacterio 100.0 3.1E-51 6.8E-56 478.4 13.9 362 10-386 320-697 (709)
15 COG1135 AbcC ABC-type metal io 100.0 9.2E-50 2E-54 412.0 22.6 222 149-384 1-230 (339)
16 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-48 2.3E-53 391.7 22.9 221 148-385 7-235 (263)
17 COG1131 CcmA ABC-type multidru 100.0 3.6E-48 7.7E-53 414.2 26.6 222 149-389 4-230 (293)
18 COG3842 PotA ABC-type spermidi 100.0 1.4E-48 3.1E-53 419.4 22.7 234 148-407 4-240 (352)
19 COG3839 MalK ABC-type sugar tr 100.0 3E-48 6.5E-53 414.9 24.5 218 149-385 3-223 (338)
20 COG1120 FepC ABC-type cobalami 100.0 1.9E-48 4.2E-53 402.0 21.8 220 149-384 2-227 (258)
21 KOG0055 Multidrug/pheromone ex 100.0 1.2E-49 2.6E-54 471.7 12.0 357 9-385 834-1213(1228)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-47 3.2E-52 393.5 24.3 219 148-385 3-227 (254)
23 COG1136 SalX ABC-type antimicr 100.0 2.4E-47 5.3E-52 386.7 25.3 210 150-374 2-220 (226)
24 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-47 3.8E-52 388.1 23.5 204 149-372 3-207 (248)
25 COG1132 MdlB ABC-type multidru 100.0 1.6E-48 3.4E-53 454.1 14.2 362 8-385 177-552 (567)
26 PRK11174 cysteine/glutathione 100.0 3.5E-48 7.6E-53 453.1 16.9 352 10-385 190-572 (588)
27 COG3638 ABC-type phosphate/pho 100.0 3.1E-47 6.7E-52 380.3 20.2 223 149-386 3-238 (258)
28 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-48 5.3E-53 462.7 14.0 354 9-385 327-702 (711)
29 COG1118 CysA ABC-type sulfate/ 100.0 3.6E-47 7.8E-52 391.8 20.6 220 149-385 2-227 (345)
30 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.7E-48 1E-52 459.5 15.7 351 10-385 302-673 (686)
31 COG2884 FtsE Predicted ATPase 100.0 8.5E-47 1.9E-51 364.9 20.1 213 149-379 1-220 (223)
32 COG1117 PstB ABC-type phosphat 100.0 8.2E-47 1.8E-51 371.1 18.9 233 148-404 6-248 (253)
33 COG4555 NatA ABC-type Na+ tran 100.0 7E-47 1.5E-51 368.3 18.2 219 149-385 1-222 (245)
34 PRK13537 nodulation ABC transp 100.0 1.1E-45 2.4E-50 398.0 28.5 219 148-385 6-227 (306)
35 KOG0057 Mitochondrial Fe/S clu 100.0 9.9E-48 2.1E-52 420.7 11.2 340 19-385 211-574 (591)
36 TIGR02314 ABC_MetN D-methionin 100.0 1.8E-45 3.9E-50 400.6 28.0 220 150-384 2-229 (343)
37 TIGR03375 type_I_sec_LssB type 100.0 2.8E-47 6.1E-52 453.4 15.1 358 9-386 311-689 (694)
38 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-47 5.3E-52 455.1 14.3 354 10-385 320-700 (710)
39 PRK11176 lipid transporter ATP 100.0 3.7E-47 8.1E-52 444.0 15.1 358 9-385 191-567 (582)
40 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-47 5.7E-52 454.6 13.9 356 9-385 321-697 (708)
41 PTZ00265 multidrug resistance 100.0 2.9E-47 6.2E-52 478.7 14.1 354 15-385 1015-1452(1466)
42 TIGR03265 PhnT2 putative 2-ami 100.0 4E-45 8.7E-50 400.1 28.5 218 149-385 4-224 (353)
43 PRK11650 ugpC glycerol-3-phosp 100.0 4.3E-45 9.3E-50 400.3 28.7 218 149-384 3-223 (356)
44 cd03261 ABC_Org_Solvent_Resist 100.0 4E-45 8.8E-50 379.2 26.7 217 150-384 1-225 (235)
45 PRK11432 fbpC ferric transport 100.0 6.1E-45 1.3E-49 398.2 28.6 217 149-384 6-225 (351)
46 PRK11160 cysteine/glutathione 100.0 1E-46 2.2E-51 439.1 14.1 354 9-385 187-562 (574)
47 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-44 3.3E-49 396.3 28.6 218 149-385 5-228 (362)
48 PRK10851 sulfate/thiosulfate t 100.0 1.7E-44 3.8E-49 395.1 28.4 220 149-384 2-225 (353)
49 PRK13536 nodulation factor exp 100.0 3.4E-44 7.3E-49 391.0 30.0 220 148-386 40-262 (340)
50 TIGR01842 type_I_sec_PrtD type 100.0 4.2E-46 9E-51 431.7 15.6 355 11-385 169-542 (544)
51 COG1124 DppF ABC-type dipeptid 100.0 6.9E-45 1.5E-49 366.0 22.4 221 149-385 3-231 (252)
52 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-44 2.7E-49 373.0 24.6 218 149-385 3-228 (235)
53 PRK09452 potA putrescine/sperm 100.0 3.7E-44 7.9E-49 394.7 29.1 217 149-384 14-233 (375)
54 TIGR01846 type_I_sec_HlyB type 100.0 4.9E-46 1.1E-50 442.7 15.0 356 10-385 305-680 (694)
55 cd03265 ABC_DrrA DrrA is the A 100.0 3.1E-44 6.7E-49 368.9 26.0 215 150-383 1-219 (220)
56 COG3840 ThiQ ABC-type thiamine 100.0 6.3E-45 1.4E-49 349.2 19.1 214 150-384 2-218 (231)
57 PRK10789 putative multidrug tr 100.0 7.1E-46 1.5E-50 431.7 15.1 353 10-385 164-538 (569)
58 TIGR01288 nodI ATP-binding ABC 100.0 4.8E-44 1E-48 385.0 28.1 218 149-385 4-224 (303)
59 PRK11607 potG putrescine trans 100.0 7.2E-44 1.6E-48 393.0 29.9 219 148-385 18-239 (377)
60 PRK11153 metN DL-methionine tr 100.0 5.5E-44 1.2E-48 390.5 28.1 220 150-384 2-229 (343)
61 cd03219 ABC_Mj1267_LivG_branch 100.0 5E-44 1.1E-48 371.0 26.3 219 150-384 1-231 (236)
62 PRK10790 putative multidrug tr 100.0 1.2E-45 2.6E-50 432.0 15.7 350 10-385 192-563 (592)
63 cd03259 ABC_Carb_Solutes_like 100.0 4E-44 8.7E-49 366.1 25.0 210 150-378 1-213 (213)
64 TIGR00960 3a0501s02 Type II (G 100.0 3.6E-44 7.8E-49 367.3 24.6 208 150-374 2-216 (216)
65 cd03296 ABC_CysA_sulfate_impor 100.0 8.3E-44 1.8E-48 370.4 27.2 220 149-384 2-225 (239)
66 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-45 2.4E-50 430.5 14.7 354 11-385 182-556 (571)
67 PRK13643 cbiO cobalt transport 100.0 1.3E-43 2.9E-48 378.9 29.1 237 150-401 2-252 (288)
68 PRK11000 maltose/maltodextrin 100.0 1E-43 2.2E-48 391.7 28.6 218 149-385 3-223 (369)
69 cd03218 ABC_YhbG The ABC trans 100.0 9E-44 2E-48 368.1 26.1 216 150-384 1-221 (232)
70 cd03293 ABC_NrtD_SsuB_transpor 100.0 1E-43 2.2E-48 365.1 26.1 216 150-381 1-219 (220)
71 cd03258 ABC_MetN_methionine_tr 100.0 9.5E-44 2E-48 368.3 26.0 220 150-384 2-229 (233)
72 cd03269 ABC_putative_ATPase Th 100.0 7.3E-44 1.6E-48 363.4 24.7 210 150-378 1-210 (210)
73 PRK13657 cyclic beta-1,2-gluca 100.0 3.3E-45 7.1E-50 428.0 16.7 355 10-385 183-558 (588)
74 cd03260 ABC_PstB_phosphate_tra 100.0 6.7E-44 1.5E-48 368.0 24.0 217 150-382 1-226 (227)
75 cd03263 ABC_subfamily_A The AB 100.0 1.1E-43 2.4E-48 364.6 25.2 216 150-383 1-219 (220)
76 PRK13637 cbiO cobalt transport 100.0 2.5E-43 5.4E-48 376.6 28.7 232 149-395 2-247 (287)
77 TIGR03522 GldA_ABC_ATP gliding 100.0 1.8E-43 4E-48 380.1 27.4 217 149-385 2-221 (301)
78 cd03256 ABC_PhnC_transporter A 100.0 1.2E-43 2.6E-48 369.1 25.0 220 150-384 1-233 (241)
79 cd03301 ABC_MalK_N The N-termi 100.0 1.6E-43 3.5E-48 361.6 25.4 210 150-378 1-213 (213)
80 PRK11264 putative amino-acid A 100.0 2.4E-43 5.2E-48 369.1 27.0 218 149-384 3-232 (250)
81 PRK13634 cbiO cobalt transport 100.0 3.2E-43 6.9E-48 376.3 28.3 232 149-395 2-248 (290)
82 cd03266 ABC_NatA_sodium_export 100.0 2.1E-43 4.6E-48 361.9 25.8 214 150-378 2-218 (218)
83 PRK09493 glnQ glutamine ABC tr 100.0 3E-43 6.5E-48 366.3 27.1 217 150-384 2-224 (240)
84 TIGR01188 drrA daunorubicin re 100.0 1.4E-43 3.1E-48 381.2 25.4 207 169-386 5-214 (302)
85 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.5E-43 5.5E-48 367.4 26.4 216 150-384 1-224 (242)
86 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-43 3.7E-48 363.5 24.5 214 150-384 1-220 (222)
87 PRK09536 btuD corrinoid ABC tr 100.0 2.2E-43 4.8E-48 390.9 26.9 220 149-384 3-227 (402)
88 TIGR02315 ABC_phnC phosphonate 100.0 1.8E-43 3.8E-48 368.5 24.4 219 150-383 2-233 (243)
89 PRK11831 putative ABC transpor 100.0 4.1E-43 8.9E-48 371.6 27.6 218 149-384 7-232 (269)
90 PRK13631 cbiO cobalt transport 100.0 8E-43 1.7E-47 377.6 29.9 233 148-395 20-278 (320)
91 PRK13647 cbiO cobalt transport 100.0 7.5E-43 1.6E-47 370.6 29.1 217 149-383 4-225 (274)
92 KOG0056 Heavy metal exporter H 100.0 1.7E-45 3.7E-50 394.5 8.3 348 17-385 393-761 (790)
93 cd03268 ABC_BcrA_bacitracin_re 100.0 2.8E-43 6E-48 358.6 23.8 206 150-378 1-208 (208)
94 PRK13650 cbiO cobalt transport 100.0 7.5E-43 1.6E-47 371.5 28.1 229 149-394 4-241 (279)
95 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-43 7E-48 360.6 23.8 209 150-374 1-218 (218)
96 COG1137 YhbG ABC-type (unclass 100.0 1.5E-44 3.2E-49 351.7 13.1 220 149-385 4-228 (243)
97 TIGR01192 chvA glucan exporter 100.0 1.4E-44 3E-49 421.9 15.5 354 11-385 184-558 (585)
98 TIGR00972 3a0107s01c2 phosphat 100.0 9.7E-43 2.1E-47 364.1 27.4 215 150-384 2-231 (247)
99 cd03234 ABCG_White The White s 100.0 9.2E-43 2E-47 359.5 26.7 221 149-378 3-226 (226)
100 PRK10895 lipopolysaccharide AB 100.0 7E-43 1.5E-47 363.8 25.9 218 149-384 3-225 (241)
101 TIGR02868 CydC thiol reductant 100.0 6.2E-45 1.3E-49 420.6 11.5 325 11-355 182-529 (529)
102 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.5E-42 3.3E-47 360.2 27.9 216 150-385 2-221 (236)
103 PRK10619 histidine/lysine/argi 100.0 1.4E-42 2.9E-47 365.2 27.8 218 149-384 5-240 (257)
104 TIGR01978 sufC FeS assembly AT 100.0 1.1E-42 2.4E-47 362.3 26.5 220 150-383 1-232 (243)
105 TIGR01186 proV glycine betaine 100.0 9.2E-43 2E-47 381.5 26.9 207 168-385 4-219 (363)
106 TIGR02673 FtsE cell division A 100.0 8E-43 1.7E-47 356.6 24.8 206 150-373 2-214 (214)
107 PRK14247 phosphate ABC transpo 100.0 1.7E-42 3.7E-47 362.8 27.8 224 149-384 3-233 (250)
108 PRK11629 lolD lipoprotein tran 100.0 1.7E-42 3.6E-47 359.2 27.3 216 149-380 5-229 (233)
109 PRK13646 cbiO cobalt transport 100.0 1.4E-42 3E-47 370.8 27.3 222 149-385 2-235 (286)
110 PRK15079 oligopeptide ABC tran 100.0 1.5E-42 3.2E-47 376.9 27.9 227 149-384 8-250 (331)
111 PRK11614 livF leucine/isoleuci 100.0 9.9E-43 2.2E-47 361.7 25.4 215 149-384 5-225 (237)
112 PRK13651 cobalt transporter AT 100.0 2.2E-42 4.9E-47 371.8 28.9 221 149-384 2-253 (305)
113 COG0411 LivG ABC-type branched 100.0 2.3E-43 5E-48 355.3 19.7 221 149-385 4-239 (250)
114 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-42 3.3E-47 363.7 26.7 217 150-384 1-235 (252)
115 PRK11124 artP arginine transpo 100.0 1.9E-42 4E-47 360.8 27.1 216 149-383 2-228 (242)
116 cd03292 ABC_FtsE_transporter F 100.0 1E-42 2.2E-47 355.7 24.6 207 150-374 1-214 (214)
117 PRK13636 cbiO cobalt transport 100.0 2.1E-42 4.6E-47 368.8 28.1 218 149-385 5-231 (283)
118 TIGR02204 MsbA_rel ABC transpo 100.0 3E-44 6.4E-49 419.0 14.8 355 9-385 184-563 (576)
119 cd03264 ABC_drug_resistance_li 100.0 8.6E-43 1.9E-47 355.8 23.7 208 150-378 1-211 (211)
120 PRK14273 phosphate ABC transpo 100.0 2.6E-42 5.5E-47 362.4 27.7 218 149-384 7-237 (254)
121 PRK13638 cbiO cobalt transport 100.0 2.7E-42 5.9E-47 365.7 28.0 216 150-384 2-224 (271)
122 PRK13641 cbiO cobalt transport 100.0 2.4E-42 5.2E-47 369.1 27.7 221 149-384 2-233 (287)
123 COG4988 CydD ABC-type transpor 100.0 3.1E-43 6.8E-48 391.1 21.6 216 147-385 318-543 (559)
124 PRK14268 phosphate ABC transpo 100.0 3E-42 6.4E-47 362.9 27.9 221 149-384 12-241 (258)
125 PRK14242 phosphate transporter 100.0 2.7E-42 5.9E-47 361.9 27.4 224 147-384 4-236 (253)
126 PRK13635 cbiO cobalt transport 100.0 3.2E-42 6.9E-47 366.6 28.2 219 149-385 5-229 (279)
127 COG0410 LivF ABC-type branched 100.0 1.1E-42 2.3E-47 348.0 22.7 217 149-385 3-226 (237)
128 PRK09473 oppD oligopeptide tra 100.0 4.3E-42 9.3E-47 373.4 28.8 227 149-385 12-251 (330)
129 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-42 2.9E-47 367.7 24.2 215 151-384 26-249 (269)
130 PRK14267 phosphate ABC transpo 100.0 4.1E-42 8.9E-47 360.5 27.5 224 149-384 4-236 (253)
131 PRK11022 dppD dipeptide transp 100.0 4.4E-42 9.6E-47 372.8 28.5 227 149-384 3-242 (326)
132 PRK11248 tauB taurine transpor 100.0 3.4E-42 7.4E-47 361.8 26.8 212 150-381 2-216 (255)
133 cd03226 ABC_cobalt_CbiO_domain 100.0 1.2E-42 2.7E-47 353.2 22.5 202 151-375 1-205 (205)
134 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-42 4.6E-47 353.1 24.2 207 150-374 1-213 (213)
135 cd03257 ABC_NikE_OppD_transpor 100.0 3E-42 6.5E-47 355.5 25.6 215 150-378 2-228 (228)
136 TIGR03411 urea_trans_UrtD urea 100.0 4.4E-42 9.4E-47 357.9 27.1 219 149-384 2-230 (242)
137 PRK11300 livG leucine/isoleuci 100.0 3.7E-42 8.1E-47 361.2 26.7 220 149-384 5-242 (255)
138 PRK14245 phosphate ABC transpo 100.0 5.1E-42 1.1E-46 359.3 27.7 222 149-384 3-233 (250)
139 PRK13548 hmuV hemin importer A 100.0 3.6E-42 7.8E-47 362.3 26.6 217 149-384 2-229 (258)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-42 6.8E-47 354.0 25.3 210 150-375 2-220 (221)
141 PRK10908 cell division protein 100.0 3.8E-42 8.2E-47 353.9 25.8 208 150-375 2-216 (222)
142 COG4987 CydC ABC-type transpor 100.0 2E-43 4.4E-48 386.7 17.3 215 149-385 336-561 (573)
143 PRK13644 cbiO cobalt transport 100.0 4.7E-42 1E-46 364.5 27.3 216 150-384 2-223 (274)
144 PRK13649 cbiO cobalt transport 100.0 7.4E-42 1.6E-46 364.1 28.7 221 149-384 2-233 (280)
145 PRK13648 cbiO cobalt transport 100.0 9.3E-42 2E-46 361.3 29.2 218 149-384 7-230 (269)
146 PRK13639 cbiO cobalt transport 100.0 7.8E-42 1.7E-46 363.0 28.6 217 150-385 2-226 (275)
147 PRK11247 ssuB aliphatic sulfon 100.0 3.7E-42 8.1E-47 361.7 25.7 207 149-381 12-219 (257)
148 PRK11308 dppF dipeptide transp 100.0 7E-42 1.5E-46 371.3 28.6 227 149-385 5-244 (327)
149 TIGR01257 rim_protein retinal- 100.0 2.6E-39 5.7E-44 407.4 55.9 223 148-388 927-1152(2272)
150 PRK14269 phosphate ABC transpo 100.0 6E-42 1.3E-46 358.0 26.9 223 149-384 2-229 (246)
151 PRK13652 cbiO cobalt transport 100.0 6.7E-42 1.4E-46 363.9 27.6 218 149-385 3-227 (277)
152 PRK10070 glycine betaine trans 100.0 6.6E-42 1.4E-46 378.9 28.6 203 171-384 42-253 (400)
153 PRK09984 phosphonate/organopho 100.0 5.2E-42 1.1E-46 361.8 26.5 220 149-383 4-240 (262)
154 PRK10744 pstB phosphate transp 100.0 7.9E-42 1.7E-46 360.0 27.7 224 147-384 11-243 (260)
155 PRK11231 fecE iron-dicitrate t 100.0 3.8E-42 8.3E-47 361.3 25.3 220 149-384 2-226 (255)
156 PRK15093 antimicrobial peptide 100.0 7.7E-42 1.7E-46 371.8 28.2 229 149-384 3-247 (330)
157 COG4618 ArpD ABC-type protease 100.0 7.2E-44 1.6E-48 386.8 12.1 361 13-388 189-563 (580)
158 TIGR02769 nickel_nikE nickel i 100.0 6.2E-42 1.3E-46 361.8 26.6 226 149-384 2-239 (265)
159 PRK13632 cbiO cobalt transport 100.0 7.4E-42 1.6E-46 362.4 27.2 218 149-384 7-230 (271)
160 PRK10575 iron-hydroxamate tran 100.0 5.8E-42 1.3E-46 362.1 26.1 220 149-384 11-236 (265)
161 cd03235 ABC_Metallic_Cations A 100.0 1.9E-42 4.1E-47 353.8 21.6 210 151-378 1-213 (213)
162 PRK14235 phosphate transporter 100.0 9.4E-42 2E-46 360.9 27.5 223 149-384 19-250 (267)
163 cd03225 ABC_cobalt_CbiO_domain 100.0 3.4E-42 7.3E-47 351.3 23.2 206 151-373 1-211 (211)
164 PRK14256 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 357.2 27.7 223 149-384 4-235 (252)
165 PRK13640 cbiO cobalt transport 100.0 1.4E-41 3E-46 362.3 28.8 220 149-385 5-232 (282)
166 TIGR03410 urea_trans_UrtE urea 100.0 4.8E-42 1E-46 354.9 24.5 212 150-383 1-219 (230)
167 PRK13633 cobalt transporter AT 100.0 1.2E-41 2.7E-46 362.4 28.2 222 149-385 4-233 (280)
168 TIGR03740 galliderm_ABC gallid 100.0 7.5E-42 1.6E-46 351.9 25.5 210 150-382 1-210 (223)
169 PRK14274 phosphate ABC transpo 100.0 1.2E-41 2.5E-46 358.5 27.5 222 149-384 12-242 (259)
170 COG4152 ABC-type uncharacteriz 100.0 1.3E-42 2.8E-47 347.2 19.0 220 149-387 2-221 (300)
171 TIGR03873 F420-0_ABC_ATP propo 100.0 7E-42 1.5E-46 359.6 25.7 219 150-384 2-225 (256)
172 TIGR00968 3a0106s01 sulfate AB 100.0 9.6E-42 2.1E-46 354.6 26.4 216 150-384 1-219 (237)
173 PRK10253 iron-enterobactin tra 100.0 6.9E-42 1.5E-46 361.5 25.6 220 149-384 7-232 (265)
174 PRK14237 phosphate transporter 100.0 1.6E-41 3.5E-46 359.1 28.3 224 147-384 18-250 (267)
175 PRK14241 phosphate transporter 100.0 1.2E-41 2.7E-46 358.1 27.3 223 149-384 4-241 (258)
176 TIGR02857 CydD thiol reductant 100.0 1E-43 2.2E-48 410.5 12.3 338 10-369 171-529 (529)
177 PRK14239 phosphate transporter 100.0 1.5E-41 3.3E-46 355.9 27.5 222 149-384 5-235 (252)
178 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-41 3.6E-46 351.6 26.7 216 150-384 1-219 (232)
179 COG4175 ProV ABC-type proline/ 100.0 1.8E-42 4E-47 357.1 19.2 204 171-385 42-254 (386)
180 cd03298 ABC_ThiQ_thiamine_tran 100.0 1E-41 2.2E-46 347.9 24.4 208 150-378 1-211 (211)
181 PRK14250 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 354.7 25.3 212 149-384 3-220 (241)
182 PRK14257 phosphate ABC transpo 100.0 3.3E-41 7.1E-46 366.2 29.6 224 148-384 79-312 (329)
183 PRK14240 phosphate transporter 100.0 2.5E-41 5.4E-46 354.0 27.5 222 149-384 3-233 (250)
184 PRK13645 cbiO cobalt transport 100.0 2.1E-41 4.5E-46 362.2 27.2 221 149-384 6-239 (289)
185 COG0444 DppD ABC-type dipeptid 100.0 1.1E-41 2.4E-46 356.9 24.3 226 150-384 2-242 (316)
186 PRK14244 phosphate ABC transpo 100.0 2.1E-41 4.5E-46 354.9 26.6 223 149-384 5-236 (251)
187 PRK13642 cbiO cobalt transport 100.0 3.5E-41 7.6E-46 358.4 28.7 219 149-384 4-228 (277)
188 PRK10584 putative ABC transpor 100.0 2.2E-41 4.8E-46 349.4 26.4 213 149-377 6-227 (228)
189 TIGR03415 ABC_choXWV_ATP choli 100.0 1.7E-41 3.7E-46 373.2 26.8 206 168-384 35-253 (382)
190 PRK10771 thiQ thiamine transpo 100.0 2.1E-41 4.6E-46 350.8 26.0 214 150-384 2-218 (232)
191 PRK14270 phosphate ABC transpo 100.0 3.6E-41 7.9E-46 353.1 27.7 222 149-384 4-234 (251)
192 PRK14272 phosphate ABC transpo 100.0 3.7E-41 8E-46 353.0 27.6 223 149-384 4-235 (252)
193 PTZ00265 multidrug resistance 100.0 3E-43 6.5E-48 442.5 14.0 350 10-372 224-655 (1466)
194 PRK14262 phosphate ABC transpo 100.0 3.7E-41 8E-46 352.7 27.3 222 149-384 3-233 (250)
195 TIGR02142 modC_ABC molybdenum 100.0 2E-41 4.4E-46 371.9 26.5 209 154-385 4-221 (354)
196 PRK15112 antimicrobial peptide 100.0 2.9E-41 6.3E-46 357.1 26.5 226 149-384 4-238 (267)
197 cd03299 ABC_ModC_like Archeal 100.0 4.1E-41 8.8E-46 349.4 27.0 215 150-384 1-218 (235)
198 PRK13549 xylose transporter AT 100.0 1.6E-41 3.4E-46 390.2 26.0 220 149-383 5-230 (506)
199 PRK14259 phosphate ABC transpo 100.0 4.2E-41 9E-46 356.3 27.2 222 148-385 12-253 (269)
200 PRK11144 modC molybdate transp 100.0 2.8E-41 6.1E-46 370.4 26.8 207 150-384 2-217 (352)
201 PRK14236 phosphate transporter 100.0 6.1E-41 1.3E-45 355.6 28.2 222 149-384 25-255 (272)
202 cd03233 ABC_PDR_domain1 The pl 100.0 3E-41 6.5E-46 342.6 24.6 195 149-378 3-202 (202)
203 PLN03130 ABC transporter C fam 100.0 8.4E-43 1.8E-47 442.2 16.3 217 148-385 1236-1461(1622)
204 COG5265 ATM1 ABC-type transpor 100.0 3.3E-43 7.1E-48 374.2 10.3 341 19-386 119-487 (497)
205 cd03232 ABC_PDR_domain2 The pl 100.0 3.1E-41 6.7E-46 339.8 24.1 189 149-378 3-192 (192)
206 PRK14253 phosphate ABC transpo 100.0 5E-41 1.1E-45 351.5 26.6 221 149-383 3-231 (249)
207 TIGR01277 thiQ thiamine ABC tr 100.0 5.2E-41 1.1E-45 343.4 26.0 209 150-379 1-212 (213)
208 PRK14251 phosphate ABC transpo 100.0 7E-41 1.5E-45 350.8 27.3 222 149-384 4-234 (251)
209 PRK14261 phosphate ABC transpo 100.0 7.1E-41 1.5E-45 351.3 27.4 222 149-384 6-236 (253)
210 PRK13547 hmuV hemin importer A 100.0 2.9E-41 6.3E-46 357.8 24.7 220 150-384 2-243 (272)
211 PRK14248 phosphate ABC transpo 100.0 8.6E-41 1.9E-45 353.7 28.1 222 149-384 21-251 (268)
212 PRK14249 phosphate ABC transpo 100.0 8.9E-41 1.9E-45 350.1 27.5 221 149-384 4-234 (251)
213 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-41 3.8E-46 352.2 21.7 214 150-385 1-225 (237)
214 PRK14238 phosphate transporter 100.0 1E-40 2.3E-45 353.6 27.7 222 149-384 24-254 (271)
215 PRK11701 phnK phosphonate C-P 100.0 9.9E-41 2.2E-45 351.2 26.9 218 149-384 6-240 (258)
216 PRK14271 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 354.2 27.4 221 149-384 21-250 (276)
217 COG4559 ABC-type hemin transpo 100.0 2.3E-41 5.1E-46 332.1 20.1 217 149-385 1-230 (259)
218 PLN03232 ABC transporter C fam 100.0 1.1E-42 2.4E-47 440.7 13.8 215 148-385 1233-1458(1495)
219 TIGR00957 MRP_assoc_pro multi 100.0 2.5E-42 5.4E-47 438.0 17.0 215 148-385 1283-1508(1522)
220 cd03297 ABC_ModC_molybdenum_tr 100.0 8E-41 1.7E-45 342.1 24.5 203 151-378 3-214 (214)
221 PRK10762 D-ribose transporter 100.0 5.4E-41 1.2E-45 385.2 25.9 219 149-383 4-228 (501)
222 PRK14260 phosphate ABC transpo 100.0 1.3E-40 2.8E-45 350.6 26.7 222 149-384 7-242 (259)
223 PRK14255 phosphate ABC transpo 100.0 2.1E-40 4.5E-45 347.4 28.1 222 149-384 5-235 (252)
224 cd03267 ABC_NatA_like Similar 100.0 6.9E-41 1.5E-45 348.0 24.2 200 168-378 32-236 (236)
225 PRK14258 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 350.1 27.4 222 149-384 7-244 (261)
226 PRK09700 D-allose transporter 100.0 6.7E-41 1.5E-45 385.3 26.4 219 149-383 5-232 (510)
227 PRK14275 phosphate ABC transpo 100.0 1.4E-40 3E-45 355.3 26.9 222 149-384 39-269 (286)
228 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-40 5.4E-45 346.7 28.0 222 149-383 7-239 (252)
229 COG4598 HisP ABC-type histidin 100.0 7.5E-42 1.6E-46 326.9 14.5 218 149-384 6-240 (256)
230 PRK10418 nikD nickel transport 100.0 2.1E-40 4.5E-45 348.0 26.4 216 148-384 3-229 (254)
231 PRK14266 phosphate ABC transpo 100.0 2.2E-40 4.9E-45 346.8 26.6 222 149-384 3-233 (250)
232 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-40 2.8E-45 382.7 27.1 213 149-384 11-228 (510)
233 cd03213 ABCG_EPDR ABCG transpo 100.0 2E-40 4.2E-45 334.5 24.8 191 149-378 3-194 (194)
234 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-40 4.7E-45 340.5 25.3 210 150-374 2-219 (220)
235 TIGR03608 L_ocin_972_ABC putat 100.0 1.3E-40 2.9E-45 338.1 23.3 198 152-369 1-206 (206)
236 PRK14265 phosphate ABC transpo 100.0 4.2E-40 9.1E-45 349.5 28.1 221 148-384 19-257 (274)
237 PRK14254 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 350.5 29.0 221 148-384 38-268 (285)
238 PRK10419 nikE nickel transport 100.0 2.3E-40 5E-45 350.5 25.8 226 149-384 3-240 (268)
239 PRK14263 phosphate ABC transpo 100.0 3.7E-40 8E-45 347.6 27.3 222 147-384 6-244 (261)
240 COG1123 ATPase components of v 100.0 1.8E-40 4E-45 370.5 26.2 228 149-386 5-245 (539)
241 PRK09580 sufC cysteine desulfu 100.0 4.2E-40 9.1E-45 344.1 27.3 229 150-392 2-241 (248)
242 cd03251 ABCC_MsbA MsbA is an e 100.0 8.2E-41 1.8E-45 346.5 21.7 215 150-386 1-226 (234)
243 COG4525 TauB ABC-type taurine 100.0 1.4E-40 3.1E-45 322.3 21.6 220 149-386 3-225 (259)
244 TIGR01184 ntrCD nitrate transp 100.0 1.3E-40 2.7E-45 344.7 22.7 201 173-383 1-202 (230)
245 PTZ00243 ABC transporter; Prov 100.0 5.2E-42 1.1E-46 434.3 14.6 215 148-385 1307-1533(1560)
246 PRK14243 phosphate transporter 100.0 3.4E-40 7.5E-45 348.4 25.6 220 149-384 10-247 (264)
247 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-40 2.2E-45 346.7 21.1 216 150-386 1-227 (238)
248 TIGR02323 CP_lyasePhnK phospho 100.0 5.1E-40 1.1E-44 344.7 26.4 218 149-384 3-237 (253)
249 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.3E-40 5E-45 350.9 23.9 213 149-385 2-225 (275)
250 cd03254 ABCC_Glucan_exporter_l 100.0 1.2E-40 2.7E-45 344.0 21.3 214 149-385 2-226 (229)
251 COG1123 ATPase components of v 100.0 2.1E-40 4.5E-45 370.1 24.7 228 148-384 279-518 (539)
252 TIGR02633 xylG D-xylose ABC tr 100.0 3.7E-40 8E-45 378.3 26.6 219 150-382 2-227 (500)
253 PRK10247 putative ABC transpor 100.0 2.7E-40 5.8E-45 341.1 22.9 210 149-381 7-223 (225)
254 COG4181 Predicted ABC-type tra 100.0 9.4E-41 2E-45 317.4 17.1 212 149-376 6-226 (228)
255 PRK14264 phosphate ABC transpo 100.0 1E-39 2.3E-44 351.6 27.3 224 149-384 45-288 (305)
256 PRK15056 manganese/iron transp 100.0 5.9E-40 1.3E-44 348.1 25.0 219 149-383 6-228 (272)
257 TIGR02770 nickel_nikD nickel i 100.0 6E-40 1.3E-44 339.5 24.3 203 172-384 1-214 (230)
258 PRK11288 araG L-arabinose tran 100.0 6.8E-40 1.5E-44 376.1 27.2 216 149-380 4-224 (501)
259 cd03245 ABCC_bacteriocin_expor 100.0 3.3E-40 7.1E-45 338.8 21.8 209 149-378 2-220 (220)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.7E-40 1.4E-44 332.2 23.3 192 150-390 1-198 (200)
261 PRK10982 galactose/methyl gala 100.0 6.9E-40 1.5E-44 375.3 25.7 215 153-383 2-221 (491)
262 PRK14246 phosphate ABC transpo 100.0 1.8E-39 3.8E-44 341.7 26.6 221 149-384 10-240 (257)
263 PRK03695 vitamin B12-transport 100.0 6.5E-40 1.4E-44 343.2 23.2 200 172-384 11-221 (248)
264 PRK14252 phosphate ABC transpo 100.0 2.6E-39 5.6E-44 341.8 27.9 223 148-384 15-248 (265)
265 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-39 2.4E-44 376.1 27.3 221 150-387 1-260 (520)
266 PRK10261 glutathione transport 100.0 1.2E-39 2.5E-44 382.6 27.9 227 148-384 312-552 (623)
267 cd03253 ABCC_ATM1_transporter 100.0 5.5E-40 1.2E-44 340.7 21.8 214 150-384 1-223 (236)
268 COG4161 ArtP ABC-type arginine 100.0 3.6E-40 7.8E-45 310.3 17.6 216 149-382 2-227 (242)
269 PRK13538 cytochrome c biogenes 100.0 1.7E-39 3.7E-44 330.1 24.0 198 150-369 2-202 (204)
270 PRK15134 microcin C ABC transp 100.0 1.3E-39 2.7E-44 376.3 25.3 226 149-384 275-514 (529)
271 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-39 3.4E-44 322.0 22.3 170 150-374 1-173 (173)
272 cd03231 ABC_CcmA_heme_exporter 100.0 2E-39 4.4E-44 328.8 23.2 195 150-369 1-198 (201)
273 TIGR01257 rim_protein retinal- 100.0 2.6E-39 5.6E-44 407.5 28.9 224 148-388 1936-2162(2272)
274 PRK10261 glutathione transport 100.0 2.6E-39 5.7E-44 379.7 26.8 222 149-384 12-257 (623)
275 PRK15134 microcin C ABC transp 100.0 4.1E-39 9E-44 372.0 27.8 224 149-384 5-245 (529)
276 PRK13543 cytochrome c biogenes 100.0 3.9E-39 8.5E-44 329.9 24.4 201 149-371 11-212 (214)
277 PRK13549 xylose transporter AT 100.0 1.5E-39 3.2E-44 373.8 23.7 223 149-383 259-492 (506)
278 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-39 3.8E-44 333.6 21.8 208 149-379 2-220 (221)
279 TIGR03269 met_CoM_red_A2 methy 100.0 4.9E-39 1.1E-43 370.7 26.7 223 148-385 278-517 (520)
280 COG4604 CeuD ABC-type enteroch 100.0 1.4E-40 3.1E-45 322.9 11.5 220 149-385 1-225 (252)
281 COG1129 MglA ABC-type sugar tr 100.0 4.3E-39 9.3E-44 357.4 24.8 216 148-379 7-228 (500)
282 PRK09544 znuC high-affinity zi 100.0 4.2E-39 9.1E-44 337.6 23.5 202 149-384 4-208 (251)
283 TIGR01189 ccmA heme ABC export 100.0 6.6E-39 1.4E-43 324.2 23.7 194 150-368 1-197 (198)
284 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.3E-39 7.2E-44 332.8 21.8 202 150-378 23-224 (224)
285 cd03288 ABCC_SUR2 The SUR doma 100.0 4.3E-39 9.4E-44 338.7 22.3 217 148-385 18-243 (257)
286 cd03229 ABC_Class3 This class 100.0 4.2E-39 9.1E-44 320.4 21.0 171 150-373 1-178 (178)
287 TIGR01271 CFTR_protein cystic 100.0 2.2E-40 4.7E-45 419.2 14.8 214 148-385 1216-1440(1490)
288 cd03247 ABCC_cytochrome_bd The 100.0 4.4E-39 9.5E-44 320.2 21.0 175 150-378 1-178 (178)
289 PRK13540 cytochrome c biogenes 100.0 7E-39 1.5E-43 324.6 22.4 193 150-367 2-197 (200)
290 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-39 5E-44 334.0 18.7 211 148-374 10-226 (226)
291 cd03246 ABCC_Protease_Secretio 100.0 5.5E-39 1.2E-43 318.1 20.5 169 150-374 1-173 (173)
292 PRK13546 teichoic acids export 100.0 5.6E-38 1.2E-42 331.2 29.3 218 148-385 3-232 (264)
293 PRK10522 multidrug transporter 100.0 9.9E-40 2.1E-44 378.6 16.9 203 148-377 321-530 (547)
294 cd03215 ABC_Carb_Monos_II This 100.0 8.1E-39 1.8E-43 319.4 21.1 171 149-374 4-182 (182)
295 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.4E-40 1.2E-44 381.3 14.6 210 148-377 336-551 (555)
296 PRK09700 D-allose transporter 100.0 6.6E-39 1.4E-43 368.8 23.3 214 149-380 265-493 (510)
297 PRK13539 cytochrome c biogenes 100.0 1.4E-38 3E-43 324.2 23.1 198 149-371 2-200 (207)
298 COG4172 ABC-type uncharacteriz 100.0 2E-38 4.4E-43 335.4 24.6 230 146-384 273-515 (534)
299 TIGR02633 xylG D-xylose ABC tr 100.0 8.3E-39 1.8E-43 367.2 23.2 221 149-381 257-488 (500)
300 PRK10938 putative molybdenum t 100.0 8.2E-39 1.8E-43 366.3 22.9 209 149-384 3-223 (490)
301 TIGR02324 CP_lyasePhnL phospho 100.0 2.6E-38 5.7E-43 325.7 24.2 208 150-370 2-223 (224)
302 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-38 4.5E-43 322.6 23.1 198 149-380 6-207 (207)
303 TIGR01166 cbiO cobalt transpor 100.0 3.2E-38 7E-43 317.0 21.7 177 169-356 4-188 (190)
304 PRK13545 tagH teichoic acids e 100.0 1.1E-37 2.3E-42 349.7 27.8 214 149-387 21-234 (549)
305 TIGR03771 anch_rpt_ABC anchore 100.0 5E-38 1.1E-42 323.8 21.6 197 178-384 1-200 (223)
306 PRK10762 D-ribose transporter 100.0 4.2E-38 9.1E-43 361.4 23.3 214 149-383 257-482 (501)
307 COG4148 ModC ABC-type molybdat 100.0 5.9E-39 1.3E-43 326.1 14.2 195 174-385 15-218 (352)
308 cd03214 ABC_Iron-Siderophores_ 100.0 2.8E-38 6.2E-43 315.0 18.5 175 151-378 1-180 (180)
309 COG0396 sufC Cysteine desulfur 100.0 2.9E-37 6.2E-42 307.7 25.1 231 149-394 3-242 (251)
310 PLN03232 ABC transporter C fam 100.0 2.6E-39 5.6E-44 410.0 12.7 342 12-385 469-828 (1495)
311 PRK11288 araG L-arabinose tran 100.0 5.7E-38 1.2E-42 360.3 22.6 215 149-383 257-483 (501)
312 cd03250 ABCC_MRP_domain1 Domai 100.0 8.4E-38 1.8E-42 317.5 20.6 194 150-373 1-204 (204)
313 COG3845 ABC-type uncharacteriz 100.0 1.6E-37 3.5E-42 338.3 22.6 215 149-379 4-223 (501)
314 cd03290 ABCC_SUR1_N The SUR do 100.0 2.6E-37 5.6E-42 317.1 22.2 200 151-373 2-218 (218)
315 PRK13541 cytochrome c biogenes 100.0 3.4E-37 7.4E-42 311.0 22.7 192 150-367 2-193 (195)
316 cd03228 ABCC_MRP_Like The MRP 100.0 1.8E-37 3.8E-42 306.7 20.0 167 150-373 1-171 (171)
317 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-37 3.9E-42 356.7 23.1 214 149-383 268-490 (510)
318 PLN03130 ABC transporter C fam 100.0 1E-38 2.2E-43 405.1 13.9 341 12-385 469-828 (1622)
319 TIGR01187 potA spermidine/putr 100.0 3E-37 6.5E-42 335.2 23.3 187 188-385 1-190 (325)
320 cd03216 ABC_Carb_Monos_I This 100.0 4.9E-37 1.1E-41 301.4 22.2 157 150-376 1-162 (163)
321 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.7E-37 2.1E-41 324.4 26.1 204 146-385 36-247 (282)
322 COG4619 ABC-type uncharacteriz 100.0 7.7E-39 1.7E-43 303.4 8.8 194 168-374 14-212 (223)
323 PRK10535 macrolide transporter 100.0 1.1E-36 2.3E-41 359.0 27.8 220 149-384 4-231 (648)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 8E-37 1.7E-41 300.7 21.0 163 150-372 1-163 (166)
325 PRK15064 ABC transporter ATP-b 100.0 7.3E-37 1.6E-41 353.4 24.0 211 150-385 2-242 (530)
326 TIGR00954 3a01203 Peroxysomal 100.0 3.6E-38 7.8E-43 371.8 12.2 340 8-371 264-653 (659)
327 PRK11819 putative ABC transpor 100.0 1.6E-36 3.4E-41 352.3 25.1 211 148-384 5-249 (556)
328 COG1119 ModF ABC-type molybden 100.0 6.2E-37 1.4E-41 308.8 18.0 216 148-379 30-256 (257)
329 PRK10982 galactose/methyl gala 100.0 1.8E-36 4E-41 347.0 22.6 215 148-380 249-475 (491)
330 PRK10938 putative molybdenum t 100.0 1.6E-36 3.5E-41 347.4 22.0 215 148-378 259-485 (490)
331 PRK15177 Vi polysaccharide exp 100.0 4.5E-36 9.7E-41 307.2 22.3 196 171-390 1-197 (213)
332 COG4172 ABC-type uncharacteriz 100.0 4E-36 8.7E-41 318.1 21.3 227 149-384 6-246 (534)
333 PRK15064 ABC transporter ATP-b 100.0 5.4E-36 1.2E-40 346.2 23.9 203 149-385 319-525 (530)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.7E-36 1.7E-40 346.3 24.5 211 149-385 4-248 (552)
335 COG4608 AppF ABC-type oligopep 100.0 7E-36 1.5E-40 307.2 20.4 194 149-385 4-199 (268)
336 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.3E-35 2.9E-40 310.1 22.4 189 171-382 8-204 (246)
337 COG4674 Uncharacterized ABC-ty 100.0 4.5E-36 9.9E-41 291.1 15.9 220 148-384 4-234 (249)
338 PRK11819 putative ABC transpor 100.0 4.5E-35 9.8E-40 340.1 24.4 205 148-383 323-531 (556)
339 KOG0054 Multidrug resistance-a 100.0 4.4E-36 9.5E-41 364.3 15.4 223 147-385 1136-1362(1381)
340 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-36 5.1E-41 383.6 13.1 209 149-385 636-850 (1522)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.1E-35 1.7E-39 337.8 24.4 204 148-382 321-528 (552)
342 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.8E-35 1E-39 307.3 18.7 199 154-378 5-220 (255)
343 PRK13409 putative ATPase RIL; 100.0 1.1E-34 2.4E-39 337.0 23.4 197 148-379 339-536 (590)
344 COG4586 ABC-type uncharacteriz 100.0 2.6E-35 5.6E-40 299.2 15.7 208 170-388 37-249 (325)
345 PRK10636 putative ABC transpor 100.0 2.3E-34 5E-39 338.4 24.2 203 148-385 311-517 (638)
346 COG1101 PhnK ABC-type uncharac 100.0 1.4E-34 3E-39 285.0 17.1 203 168-378 17-231 (263)
347 COG4136 ABC-type uncharacteriz 100.0 1.2E-34 2.7E-39 270.1 15.2 191 149-356 2-196 (213)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.3E-34 1.1E-38 274.2 19.5 144 150-373 1-144 (144)
349 COG1134 TagH ABC-type polysacc 100.0 2.7E-33 5.8E-38 282.9 23.7 224 149-391 3-242 (249)
350 PRK11147 ABC transporter ATPas 100.0 1E-33 2.2E-38 333.3 24.0 205 148-383 318-526 (635)
351 cd03238 ABC_UvrA The excision 100.0 9.8E-34 2.1E-38 280.8 19.4 158 168-374 6-166 (176)
352 PLN03073 ABC transporter F fam 100.0 2.3E-33 5.1E-38 331.6 25.7 207 148-386 507-715 (718)
353 PRK10636 putative ABC transpor 100.0 1.5E-33 3.3E-38 331.5 23.8 208 150-384 2-235 (638)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-33 2.5E-38 280.6 18.5 149 153-377 4-153 (177)
355 TIGR01271 CFTR_protein cystic 100.0 2.6E-33 5.6E-38 355.0 24.9 197 170-385 439-636 (1490)
356 COG4167 SapF ABC-type antimicr 100.0 2.5E-33 5.4E-38 269.1 17.4 227 149-385 4-239 (267)
357 KOG0059 Lipid exporter ABCA1 a 100.0 2E-33 4.4E-38 340.2 20.0 223 148-388 563-790 (885)
358 PRK11147 ABC transporter ATPas 100.0 8.3E-33 1.8E-37 325.6 24.2 208 149-384 3-242 (635)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.5E-32 3.2E-37 267.6 20.2 152 152-373 2-157 (157)
360 KOG0054 Multidrug resistance-a 100.0 2.2E-32 4.8E-37 332.2 23.0 207 148-384 517-730 (1381)
361 PRK13409 putative ATPase RIL; 100.0 2E-32 4.4E-37 318.1 18.6 189 154-372 78-287 (590)
362 PTZ00243 ABC transporter; Prov 100.0 7.8E-32 1.7E-36 341.9 22.0 199 169-385 672-870 (1560)
363 COG4107 PhnK ABC-type phosphon 100.0 7.6E-32 1.7E-36 257.0 14.1 214 149-384 6-240 (258)
364 COG4133 CcmA ABC-type transpor 100.0 8.6E-32 1.9E-36 260.9 14.5 187 150-357 3-192 (209)
365 COG0488 Uup ATPase components 100.0 2.7E-31 5.7E-36 302.1 20.6 208 149-383 3-238 (530)
366 PLN03073 ABC transporter F fam 100.0 1.1E-31 2.4E-36 317.5 17.4 219 147-383 175-429 (718)
367 COG4778 PhnL ABC-type phosphon 100.0 1.8E-30 3.9E-35 246.9 13.7 212 149-371 4-227 (235)
368 cd03270 ABC_UvrA_I The excisio 100.0 1E-29 2.2E-34 262.6 19.9 191 168-378 6-226 (226)
369 PF00005 ABC_tran: ABC transpo 100.0 4.3E-30 9.4E-35 243.7 13.4 133 173-324 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.4E-29 5.1E-34 263.9 19.9 195 170-380 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 7.1E-28 1.5E-32 268.1 21.9 213 147-379 261-484 (500)
372 COG0488 Uup ATPase components 100.0 4.6E-28 9.9E-33 275.7 20.4 205 147-385 319-525 (530)
373 COG4138 BtuD ABC-type cobalami 100.0 5.3E-29 1.2E-33 237.9 6.2 207 149-384 3-220 (248)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 4.9E-28 1.1E-32 244.9 12.8 165 174-371 14-190 (197)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.2E-28 7E-33 248.9 2.2 188 150-371 6-204 (212)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.1E-26 6.8E-31 238.7 15.0 186 168-370 13-234 (243)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.9E-26 4.2E-31 241.8 10.1 182 183-370 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.1E-26 8.8E-31 233.6 12.1 192 149-373 5-210 (213)
379 PRK00635 excinuclease ABC subu 99.9 8.1E-25 1.8E-29 273.0 23.6 138 240-385 759-906 (1809)
380 COG3845 ABC-type uncharacteriz 99.9 1.5E-24 3.3E-29 237.1 21.8 222 147-382 255-489 (501)
381 COG4615 PvdE ABC-type sideroph 99.9 5E-26 1.1E-30 240.8 9.2 206 148-379 321-531 (546)
382 cd03240 ABC_Rad50 The catalyti 99.9 1.8E-25 3.9E-30 227.4 12.5 165 175-371 15-197 (204)
383 COG4178 ABC-type uncharacteriz 99.9 5.6E-25 1.2E-29 249.3 17.1 197 147-370 390-587 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 8.2E-24 1.8E-28 254.5 23.9 126 244-385 792-927 (943)
385 COG4170 SapD ABC-type antimicr 99.9 2.3E-24 4.9E-29 211.4 10.2 229 150-385 4-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 4.2E-23 9.1E-28 248.0 22.7 125 243-383 789-923 (924)
387 KOG0927 Predicted transporter 99.9 8.8E-24 1.9E-28 231.9 14.0 216 148-384 74-308 (614)
388 KOG0927 Predicted transporter 99.9 6E-24 1.3E-28 233.2 9.2 203 147-381 387-592 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-22 5.1E-27 203.6 15.0 167 173-373 12-192 (198)
390 KOG0060 Long-chain acyl-CoA tr 99.9 6.8E-22 1.5E-26 218.6 17.3 204 148-371 432-641 (659)
391 COG1245 Predicted ATPase, RNas 99.9 1E-21 2.2E-26 211.6 16.2 174 172-370 356-530 (591)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.6E-22 7.8E-27 209.1 11.8 178 184-371 23-233 (247)
393 KOG2355 Predicted ABC-type tra 99.9 3.7E-21 8.1E-26 188.5 15.7 209 148-384 12-236 (291)
394 KOG0062 ATPase component of AB 99.9 3.6E-22 7.8E-27 218.3 9.4 203 148-384 79-284 (582)
395 KOG0066 eIF2-interacting prote 99.8 1.1E-20 2.4E-25 201.7 13.9 193 146-372 583-777 (807)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.1E-20 4.6E-25 191.4 13.8 81 292-373 123-211 (213)
397 KOG0062 ATPase component of AB 99.8 7.1E-20 1.5E-24 200.4 14.2 205 146-380 359-564 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 6.2E-20 1.3E-24 186.1 12.6 153 172-378 16-172 (200)
399 PF01061 ABC2_membrane: ABC-2 99.8 1.7E-21 3.8E-26 196.1 0.9 206 491-700 1-210 (210)
400 cd03239 ABC_SMC_head The struc 99.8 5.9E-19 1.3E-23 175.7 14.9 74 296-371 95-172 (178)
401 COG1245 Predicted ATPase, RNas 99.8 1.4E-19 3E-24 195.3 9.0 170 179-371 96-288 (591)
402 cd03283 ABC_MutS-like MutS-lik 99.8 3.1E-19 6.8E-24 180.9 9.7 136 169-356 13-149 (199)
403 PRK00635 excinuclease ABC subu 99.8 3.4E-18 7.4E-23 214.2 20.4 200 171-385 1504-1796(1809)
404 COG0178 UvrA Excinuclease ATPa 99.8 3.1E-18 6.7E-23 195.9 18.0 128 243-385 783-919 (935)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 5.9E-19 1.3E-23 181.8 8.8 153 169-379 16-175 (222)
406 cd03241 ABC_RecN RecN ATPase i 99.8 2.4E-18 5.1E-23 183.2 13.5 76 295-373 170-249 (276)
407 KOG0064 Peroxisomal long-chain 99.8 1.1E-18 2.4E-23 190.7 11.1 188 149-362 481-674 (728)
408 COG2401 ABC-type ATPase fused 99.8 2.1E-18 4.6E-23 184.1 12.5 185 169-375 395-588 (593)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 1.2E-17 2.7E-22 163.7 12.3 75 295-371 77-155 (162)
410 TIGR00630 uvra excinuclease AB 99.7 3.5E-17 7.6E-22 197.2 16.3 134 243-384 434-582 (924)
411 PRK00349 uvrA excinuclease ABC 99.7 3.8E-17 8.2E-22 197.2 14.9 135 243-385 436-585 (943)
412 cd03242 ABC_RecF RecF is a rec 99.7 2.7E-16 5.9E-21 166.9 17.1 77 293-374 181-269 (270)
413 KOG0066 eIF2-interacting prote 99.7 9E-18 1.9E-22 179.6 3.0 215 148-381 263-495 (807)
414 cd03243 ABC_MutS_homologs The 99.7 1.8E-16 3.9E-21 161.0 11.8 154 176-382 22-176 (202)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.6 6.3E-16 1.4E-20 157.2 8.6 136 169-356 15-152 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 2.1E-15 4.5E-20 154.9 10.8 158 169-384 17-180 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.2E-14 2.6E-19 156.1 12.0 178 169-370 348-531 (592)
418 TIGR02858 spore_III_AA stage I 99.6 1E-14 2.2E-19 154.2 10.9 139 184-383 112-267 (270)
419 PRK00064 recF recombination pr 99.5 1E-12 2.2E-17 145.1 16.8 77 294-374 272-359 (361)
420 smart00534 MUTSac ATPase domai 99.4 8.8E-14 1.9E-18 139.5 6.0 78 294-376 60-141 (185)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.7E-13 3.6E-18 140.8 6.4 88 269-370 121-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.7E-12 3.6E-17 133.2 13.2 134 171-356 17-155 (213)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 2.7E-13 5.9E-18 122.9 6.3 72 170-252 2-77 (107)
424 TIGR01069 mutS2 MutS2 family p 99.4 8E-13 1.7E-17 158.1 8.6 131 175-356 313-446 (771)
425 TIGR01247 drrB daunorubicin re 99.4 2.2E-10 4.8E-15 118.9 24.9 158 568-735 75-234 (236)
426 cd01128 rho_factor Transcripti 99.3 3.5E-12 7.6E-17 133.4 10.3 173 178-374 11-211 (249)
427 PTZ00132 GTP-binding nuclear p 99.3 2.5E-12 5.5E-17 131.6 7.6 44 300-343 157-205 (215)
428 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 7.1E-11 1.5E-15 120.2 17.9 148 582-741 58-207 (208)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.5E-11 5.4E-16 125.1 12.5 134 170-356 18-155 (222)
430 KOG0063 RNAse L inhibitor, ABC 99.3 9.2E-12 2E-16 134.2 9.0 170 180-371 97-288 (592)
431 TIGR01291 nodJ ABC-2 type tran 99.2 4.7E-09 1E-13 110.6 27.8 236 494-740 8-250 (253)
432 TIGR00634 recN DNA repair prot 99.2 1.4E-11 3E-16 143.8 9.2 77 294-373 439-519 (563)
433 TIGR03861 phenyl_ABC_PedC alco 99.2 7.2E-09 1.6E-13 108.9 27.5 235 490-740 1-251 (253)
434 PRK07721 fliI flagellum-specif 99.2 2.6E-10 5.5E-15 128.2 17.4 174 169-382 145-340 (438)
435 PRK10869 recombination and rep 99.2 3E-11 6.5E-16 140.2 10.1 75 295-372 430-508 (553)
436 PHA02562 46 endonuclease subun 99.2 2.4E-11 5.3E-16 141.9 9.4 79 292-374 465-555 (562)
437 COG0178 UvrA Excinuclease ATPa 99.2 1.8E-10 3.9E-15 133.1 14.9 137 242-385 427-577 (935)
438 TIGR00618 sbcc exonuclease Sbc 99.2 4.8E-11 1E-15 148.8 11.0 81 291-372 946-1036(1042)
439 TIGR00025 Mtu_efflux ABC trans 99.2 5.6E-09 1.2E-13 108.3 24.7 162 568-739 64-230 (232)
440 PRK00409 recombination and DNA 99.2 2.6E-11 5.7E-16 145.5 8.1 81 294-377 389-470 (782)
441 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1E-10 2.2E-15 120.2 8.3 135 169-356 16-154 (218)
442 PRK08533 flagellar accessory p 99.1 5.7E-10 1.2E-14 115.8 13.4 150 179-370 20-184 (230)
443 PF13304 AAA_21: AAA domain; P 99.1 8.5E-11 1.8E-15 120.1 6.8 63 294-356 235-300 (303)
444 cd01124 KaiC KaiC is a circadi 99.1 8.1E-10 1.8E-14 110.1 13.3 145 186-370 2-163 (187)
445 PRK13695 putative NTPase; Prov 99.1 8.3E-11 1.8E-15 116.6 4.3 80 294-379 77-158 (174)
446 COG3910 Predicted ATPase [Gene 99.0 3.7E-09 8E-14 103.6 13.8 82 289-373 123-205 (233)
447 PRK03918 chromosome segregatio 99.0 5.1E-10 1.1E-14 137.7 9.5 78 292-371 785-868 (880)
448 TIGR00606 rad50 rad50. This fa 99.0 7E-10 1.5E-14 141.2 9.6 108 244-363 1156-1277(1311)
449 PRK13830 conjugal transfer pro 99.0 7.9E-09 1.7E-13 125.5 17.7 78 311-392 650-736 (818)
450 PRK15066 inner membrane transp 99.0 4.7E-07 1E-11 95.5 28.8 151 581-741 101-253 (257)
451 PRK10246 exonuclease subunit S 99.0 1.4E-09 3E-14 135.4 11.0 80 291-371 945-1032(1047)
452 TIGR02788 VirB11 P-type DNA tr 99.0 1.9E-09 4.2E-14 116.7 9.8 144 175-384 136-280 (308)
453 cd01120 RecA-like_NTPases RecA 98.9 3.3E-09 7.2E-14 102.1 9.6 63 296-358 68-140 (165)
454 PRK06793 fliI flagellum-specif 98.9 4E-09 8.7E-14 117.9 10.5 169 150-380 131-306 (432)
455 PRK01156 chromosome segregatio 98.9 3.7E-09 8E-14 130.4 10.4 77 292-370 798-883 (895)
456 cd01131 PilT Pilus retraction 98.9 1.1E-08 2.4E-13 103.7 10.6 57 305-370 66-122 (198)
457 PRK06067 flagellar accessory p 98.8 2.6E-08 5.6E-13 103.5 13.1 164 171-371 12-187 (234)
458 TIGR02168 SMC_prok_B chromosom 98.8 4.8E-09 1E-13 132.5 7.5 76 292-370 1086-1165(1179)
459 cd01125 repA Hexameric Replica 98.7 5.7E-08 1.2E-12 101.4 11.4 136 183-356 1-160 (239)
460 TIGR02169 SMC_prok_A chromosom 98.7 1.7E-08 3.8E-13 127.5 8.1 77 292-371 1071-1151(1164)
461 PRK06995 flhF flagellar biosyn 98.7 3.9E-08 8.4E-13 111.5 9.9 151 171-353 244-400 (484)
462 PRK02224 chromosome segregatio 98.7 2.6E-08 5.6E-13 122.8 9.2 78 293-372 779-869 (880)
463 TIGR03238 dnd_assoc_3 dnd syst 98.7 1.5E-08 3.2E-13 113.3 5.3 52 170-224 19-70 (504)
464 smart00382 AAA ATPases associa 98.7 6.1E-07 1.3E-11 82.9 15.0 59 295-353 60-124 (148)
465 COG0842 ABC-type multidrug tra 98.7 5E-06 1.1E-10 87.1 23.7 167 568-743 116-285 (286)
466 TIGR01420 pilT_fam pilus retra 98.5 6.6E-07 1.4E-11 98.5 13.0 56 305-369 187-242 (343)
467 PRK13891 conjugal transfer pro 98.5 8.6E-07 1.9E-11 108.4 14.3 52 306-357 680-732 (852)
468 TIGR01248 drrC daunorubicin re 98.5 5E-06 1.1E-10 80.9 16.4 129 565-696 14-146 (152)
469 TIGR00611 recf recF protein. A 98.5 2.4E-07 5.2E-12 102.7 7.2 59 295-356 275-342 (365)
470 TIGR03881 KaiC_arch_4 KaiC dom 98.5 5.6E-08 1.2E-12 100.5 2.0 33 172-204 8-41 (229)
471 PRK14079 recF recombination pr 98.5 3.1E-07 6.6E-12 101.3 7.5 76 295-378 263-347 (349)
472 TIGR02655 circ_KaiC circadian 98.4 1.5E-08 3.3E-13 116.4 -2.9 167 171-370 8-190 (484)
473 TIGR01026 fliI_yscN ATPase Fli 98.4 1.6E-06 3.4E-11 97.9 13.1 175 169-383 150-346 (440)
474 cd01130 VirB11-like_ATPase Typ 98.4 7.3E-07 1.6E-11 89.5 8.2 84 172-257 14-100 (186)
475 PRK07196 fliI flagellum-specif 98.4 2.9E-07 6.3E-12 103.2 5.6 172 169-378 142-334 (434)
476 COG0419 SbcC ATPase involved i 98.4 1E-06 2.2E-11 108.9 10.5 78 292-371 812-897 (908)
477 cd02023 UMPK Uridine monophosp 98.3 5E-07 1.1E-11 91.4 5.2 112 185-328 1-113 (198)
478 PRK06002 fliI flagellum-specif 98.3 1.7E-06 3.7E-11 97.2 9.0 83 147-239 137-230 (450)
479 PRK05399 DNA mismatch repair p 98.3 1.4E-06 3E-11 106.4 8.6 138 170-365 595-738 (854)
480 PLN03210 Resistant to P. syrin 98.2 6.5E-06 1.4E-10 104.3 12.8 164 174-392 198-365 (1153)
481 TIGR02680 conserved hypothetic 98.2 1.9E-06 4.2E-11 109.9 7.4 60 293-355 1245-1316(1353)
482 PRK13898 type IV secretion sys 98.2 4.2E-05 9.1E-10 93.4 18.7 49 309-357 638-687 (800)
483 PRK09825 idnK D-gluconate kina 98.1 1.4E-06 3.1E-11 86.7 3.6 66 182-253 2-70 (176)
484 cd01122 GP4d_helicase GP4d_hel 98.1 6.2E-05 1.3E-09 79.8 15.7 36 170-205 17-52 (271)
485 PRK13873 conjugal transfer ATP 98.1 8.4E-05 1.8E-09 90.9 18.4 61 311-371 633-702 (811)
486 cd00009 AAA The AAA+ (ATPases 98.0 5E-05 1.1E-09 70.8 10.6 55 301-356 72-131 (151)
487 TIGR00767 rho transcription te 98.0 1.3E-05 2.8E-10 88.7 7.4 53 148-207 129-192 (415)
488 COG1682 TagG ABC-type polysacc 98.0 0.0036 7.7E-08 66.4 25.3 230 489-743 16-258 (263)
489 PRK06315 type III secretion sy 98.0 1.7E-05 3.7E-10 89.4 8.1 106 170-281 152-277 (442)
490 PRK00454 engB GTP-binding prot 98.0 8.7E-05 1.9E-09 74.2 12.5 67 270-344 126-195 (196)
491 PF13555 AAA_29: P-loop contai 98.0 9.9E-06 2.1E-10 66.3 4.4 35 173-207 12-47 (62)
492 TIGR03518 ABC_perm_GldF glidin 97.9 0.0041 9E-08 65.1 25.2 152 570-738 71-238 (240)
493 PF13558 SbcCD_C: Putative exo 97.9 2E-05 4.3E-10 69.8 6.5 48 293-340 30-90 (90)
494 PRK01889 GTPase RsgA; Reviewed 97.9 1E-05 2.2E-10 89.5 5.5 78 172-252 184-262 (356)
495 TIGR00416 sms DNA repair prote 97.9 3.3E-05 7.2E-10 88.1 9.6 62 312-373 169-247 (454)
496 PF12698 ABC2_membrane_3: ABC- 97.9 2.5E-06 5.3E-11 91.6 0.1 155 568-734 187-343 (344)
497 PRK09270 nucleoside triphospha 97.9 1.4E-05 2.9E-10 83.0 5.3 71 181-254 31-105 (229)
498 PF09818 ABC_ATPase: Predicted 97.9 0.00035 7.6E-09 77.7 16.1 160 179-374 241-416 (448)
499 cd01876 YihA_EngB The YihA (En 97.9 1.8E-05 4E-10 75.9 5.5 45 293-341 120-169 (170)
500 PRK03846 adenylylsulfate kinas 97.8 1E-05 2.2E-10 82.0 3.4 56 181-237 22-77 (198)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-104 Score=931.82 Aligned_cols=575 Identities=49% Similarity=0.875 Sum_probs=481.3
Q ss_pred CCceEEEEeEEEEEeeccc-c--------------------ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHH
Q 004539 146 LPIYLKFTDVTYKVILKGM-T--------------------SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~-~--------------------~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~ 204 (746)
.+..++|.|++|+....+. . ..+++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3568999999998754320 0 113567999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc
Q 004539 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (746)
Q Consensus 205 G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (746)
|+......+|+|.+||+++....+++++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||+++.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 97642224899999999987666678999999999999999999999998777665556667778899999999999999
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004539 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
|+.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999988999999999999999999999999999999999999999999999999988899999999999877889999
Q ss_pred EEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhH
Q 004539 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (746)
++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+......... . . ...
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~---------~-------~---~~~ 336 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSER---------E-------K---PNV 336 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcccc---------c-------c---chH
Confidence 99999999999999999999999999999999999999999998754211000000 0 0 001
Q ss_pred HHHHHHHHHHhHHHHHHhhh--c-CCCCCcHHh---hhhc-CCCCCCcCCcHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004539 445 HEYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQV 517 (746)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~R~~~~~~~r~~~~ 517 (746)
.+.+.+.|++.......... . ......+.. ..+. ....+.+.++||+|+.+|++|+++++|++.+.++|+++.
T Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~ 416 (659)
T PLN03211 337 KQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQV 416 (659)
T ss_pred HHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 11222233221110000000 0 000000000 0000 011123457899999999999999999998888999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 004539 518 LATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597 (746)
Q Consensus 518 i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~ 597 (746)
+++|+++|++||+++ +.++++|.|++||+++++++.+++.+++.|+.||++|+|||.+|+|++++|++|++++|+|+
T Consensus 417 i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~ 493 (659)
T PLN03211 417 IAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPM 493 (659)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999984 57899999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 004539 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPV 677 (746)
Q Consensus 598 ~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~ 677 (746)
.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++||...|+.+++++++++++|+||++++||+
T Consensus 494 ~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~ 573 (659)
T PLN03211 494 ELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPS 573 (659)
T ss_pred HHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCHHHHHHHHHHHHHcCCCCC-----CCC----------------CcccCchhhhHHHHHHHHHHHHHHHHHH
Q 004539 678 FISWIRYMSFNFHTYKILLKIQYADISP-----IVN----------------GMRTDSGFREVCALVAMVFGYRLLAYLS 736 (746)
Q Consensus 678 ~~~Wl~yiS~~~yafeal~~nef~~~~~-----~~~----------------g~~~~~~~~~~~iL~~~~~~f~~l~~~~ 736 (746)
||+|++|+||++||||+++.|||++... .+. +.+....|.++++|++++++||+++|++
T Consensus 574 ~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 653 (659)
T PLN03211 574 CMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLA 653 (659)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975321 010 1112346789999999999999999999
Q ss_pred HHHhhh
Q 004539 737 LRKMKL 742 (746)
Q Consensus 737 L~~~~~ 742 (746)
||++++
T Consensus 654 L~~~~~ 659 (659)
T PLN03211 654 LRRIKH 659 (659)
T ss_pred HHhccC
Confidence 997663
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-103 Score=911.63 Aligned_cols=566 Identities=43% Similarity=0.737 Sum_probs=489.0
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCC-
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~- 224 (746)
+..++|+|+++....+. +..+++|+|||++++|||++|||||||||||||||+|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999998874321 14588999999999999999999999999999999999998653 57899999997765
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|+..++++++++|+++++++||.+|+||++|+...|++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 45788899999999999999999999999999999989999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||.+|+.||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHHHhhh
Q 004539 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (746)
+||+++|++||++.||+||++|+++.+ .. ..+..+..+...... ..+. +. ...+... ++. +..
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~-~~~--------~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLIN-KFSQ-TD--NLKKTLE-ALE--------KSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHhh-hccc-cc--hhhhhHH-HHh--------hhc
Confidence 999999999999999999999998854 10 011110000000000 0000 00 0000000 000 000
Q ss_pred cCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 004539 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (746)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~ 543 (746)
.... .......++||.|+++|++|.+++ .|++.+.+.|+++.+++|+++|++||+++. +..+++++.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000011679999999999999997 677889999999999999999999999965 678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHH
Q 004539 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (746)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff 623 (746)
|++||++.++.|.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999998999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcC
Q 004539 624 LSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYA 701 (746)
Q Consensus 624 ~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~ 701 (746)
+|++++++..++++++|+++++++||...|+.+++++++++++|+|||++ .+|.||+|++|+||++|+||+++.|||.
T Consensus 471 ~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~ 550 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFS 550 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998 8999999999999999999999999998
Q ss_pred C-CC-C--------C--------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004539 702 D-IS-P--------I--------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 744 (746)
Q Consensus 702 ~-~~-~--------~--------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~~ 744 (746)
+ .. . . ..+++..+.|.|+.++++++++||+++|++||+..++.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 551 GGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5 11 0 0 11233456789999999999999999999999887764
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-99 Score=883.88 Aligned_cols=570 Identities=34% Similarity=0.574 Sum_probs=478.2
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCC-h
Q 004539 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~-~ 225 (746)
+++|.++. ++..... ++++++++|+|+|++++|||+++|+|||||||||||++|+|+.... ..+|+|.+||.+++ .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 45666665 4322111 1234678999999999999999999999999999999999976422 24799999999986 3
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc-ccCCCHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSGGerqRv 304 (746)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999998887777778888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||++|+.+|++++|||||+|||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|+++|.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999988899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHH-Hhh
Q 004539 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE-KKK 463 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 463 (746)
+||+++|++||++.||+||++|+++.+..... +.. ...+.+.+.|+++....+ ...
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---ESR--------------------ERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---chH--------------------HHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999865322100 000 001111122211100000 000
Q ss_pred hcCCC-CCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 004539 464 LMAPI-PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (746)
Q Consensus 464 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~ 541 (746)
..... +.....+.........+..+|++|+.+|++|+++. +|++.+.+.|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00000 00000000000112346789999999999999986 688888899999999999999999999975 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHH
Q 004539 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (746)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~ 621 (746)
+.|++|+++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999999888887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHH
Q 004539 622 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQ 699 (746)
Q Consensus 622 Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~ne 699 (746)
||+|+++++++.++++++|+++++++|+...|+.+++++++++++|+||+++ +||+||+|++|+||++|+||+++.||
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred cCCCCC-C-------------------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004539 700 YADISP-I-------------------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 700 f~~~~~-~-------------------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
|.+... . ..|++.++.|.++++|++++++|++++|++||+..++
T Consensus 552 f~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 552 WSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred hCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 976431 0 1133345668899999999999999999999886654
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.6e-96 Score=914.06 Aligned_cols=568 Identities=27% Similarity=0.464 Sum_probs=482.0
Q ss_pred CCCCceEEEEeEEEEEeecccc-----ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE
Q 004539 144 PTLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (746)
Q Consensus 144 ~~~~~~l~~~nvs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~ 218 (746)
|..|..++|+||+|.+..+... ..+++.+|+|||++++||+++||+||||||||||||+|+|+......+|+|.+
T Consensus 862 ~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~i 941 (1470)
T PLN03140 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 941 (1470)
T ss_pred CCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEE
Confidence 3345679999999998643210 11345799999999999999999999999999999999998643346899999
Q ss_pred CCEeCCh-hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 219 NDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 219 ~G~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
||.+..+ ..++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+..+++||
T Consensus 942 nG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 942 SGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 9998753 456789999999999999999999999988877666666777788999999999999999999987778999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~ 376 (746)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~ 1101 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEE
Confidence 99999999999999999999999999999999999999999999988999999999998778899999999996 89999
Q ss_pred ecCH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHH
Q 004539 377 FGKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE 450 (746)
Q Consensus 377 ~G~~----~~~~~~f~~~-G~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (746)
+|++ +++++||+++ |+ +||++.|||||++|+++.+... +. . .+ +.+
T Consensus 1102 ~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~-------------~d----~~~ 1153 (1470)
T PLN03140 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--G-------------ID----FAE 1153 (1470)
T ss_pred ECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--c-------------ch----HHH
Confidence 9996 6899999998 56 4999999999999997642110 00 0 00 111
Q ss_pred HHHHhHHH----HHHhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHH
Q 004539 451 AYETRVAE----NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILG 525 (746)
Q Consensus 451 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G 525 (746)
.|+++... ........+.+... ......++..+||+|+++|++|++++ +|++.+.+.|+++.+++|+++|
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G 1228 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPPPGAS-----DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCCCCcc-----ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 11111000 00001111111100 11123457889999999999999985 8999999999999999999999
Q ss_pred HHhcCCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 004539 526 LLWWQSDSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603 (746)
Q Consensus 526 ~lf~~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~ 603 (746)
++||+++++. ..+++++.|++|+++++.++..+...++.|..||++|+|||++|+|++.+|++|++++|+|+.++.++
T Consensus 1229 ~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~ 1308 (1470)
T PLN03140 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308 (1470)
T ss_pred HHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997532 36788899999999999888777777899999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhh
Q 004539 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISW 681 (746)
Q Consensus 604 if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W 681 (746)
+|++|+|||+||+++++.||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++| +||+||+|
T Consensus 1309 if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W 1388 (1470)
T PLN03140 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388 (1470)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred hhccCHHHHHHHHHHHHHcCCCCCC------------------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004539 682 IRYMSFNFHTYKILLKIQYADISPI------------------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 682 l~yiS~~~yafeal~~nef~~~~~~------------------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
++|+||++|+|++++.|||.+.... ..|++.++.|.++++++++.++|++++++++|+.+++
T Consensus 1389 ~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999874321 1234445667899999999999999999999999987
Q ss_pred c
Q 004539 744 F 744 (746)
Q Consensus 744 ~ 744 (746)
.
T Consensus 1469 ~ 1469 (1470)
T PLN03140 1469 T 1469 (1470)
T ss_pred c
Confidence 4
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.3e-95 Score=907.44 Aligned_cols=555 Identities=26% Similarity=0.422 Sum_probs=462.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hccCcEEEEecCCcCCCC
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 243 (746)
++++|+|+|+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 3468999999998742 345679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CCcHHHHHHH-HHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEE
Q 004539 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ill 318 (746)
+||+|||.|++.++.|. ..++++..++ ++++++.+||++++|+.+|+..+++|||||||||+||++|+.+|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998877543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCC
Q 004539 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~ 397 (746)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhH------HHHHHh-hhcCCCCC
Q 004539 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKK-KLMAPIPL 470 (746)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~ 470 (746)
.|||||++|+++.+.+... ...++..+ ... +.+.++|+++. .+.+.. +.......
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~~------------~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKVP------------RTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccCC------------CCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999865422110 00000000 011 11222222111 000000 00000000
Q ss_pred cH-------HhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 004539 471 DE-------EIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (746)
Q Consensus 471 ~~-------~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~ 542 (746)
.+ ..+.+.......+..|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 00 0001111233457889999999999999986 688888899999999999999999999975 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHH
Q 004539 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (746)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~F 622 (746)
.|++||++++.+|.++ ..+..++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888774 667778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 004539 623 FLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 700 (746)
Q Consensus 623 f~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef 700 (746)
|+|+++++++.++++++++++++++||...|+.+++++++++++|+||+++ +||+||+|++|+||++||||+++.|||
T Consensus 533 f~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef 612 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEF 612 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999997 799999999999999999999999999
Q ss_pred CCCCCC--------------------C------------C---------CcccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004539 701 ADISPI--------------------V------------N---------GMRTDSGFREVCALVAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 701 ~~~~~~--------------------~------------~---------g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 739 (746)
.+.... + . |++.++.|.|+++|++++++|++++++++.+
T Consensus 613 ~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 613 HGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred cCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 762210 0 1 1222456889999999999999999999999
Q ss_pred hhhh
Q 004539 740 MKLH 743 (746)
Q Consensus 740 ~~~~ 743 (746)
++..
T Consensus 693 ~~~~ 696 (1394)
T TIGR00956 693 NKGA 696 (1394)
T ss_pred cccc
Confidence 8743
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-93 Score=893.64 Aligned_cols=555 Identities=25% Similarity=0.394 Sum_probs=457.7
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChh-ccCcEEEEecCCcCCCCCC
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lT 245 (746)
.++.||+|+|+.++|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|+|.+++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999976421 2489999999988542 3678999999999999999
Q ss_pred HHHHHHHHHhccCCC-------CCcHHHH------------------------HHHHHHHHHHcCCCccccccccCcccc
Q 004539 246 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 246 V~E~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
|+|||.|+++++.+. ..+++++ +..++++++.+||++++||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998765321 1112211 123577899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999986 489999999999888999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 004539 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 453 (746)
Q Consensus 374 iv~~G~~~~~~~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (746)
++|+|+++++.+||+++|++||+++|||||++|+++.+... .... . ...|......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~--------~~~~---~-----~~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE--------QYWA---D-----RNKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh--------hhhh---c-----cCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998742110 0000 0 000000001122444454
Q ss_pred HhHHHH-HHhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC
Q 004539 454 TRVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 531 (746)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~ 531 (746)
++.... ...+... +.+...........+.|..++|.|++.|++|+++. +||+.+++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSV--PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhh--hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 332111 0011111 11111011111223457889999999999999986 6888888999999999999999999998
Q ss_pred CCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004539 532 DSK--SPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 609 (746)
Q Consensus 532 ~~~--~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~iv 609 (746)
+.+ +..+.+.+.|++||++++.+|.+ +..+..++.||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 642 12345678899999988877655 578899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCH
Q 004539 610 YFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSF 687 (746)
Q Consensus 610 Y~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~ 687 (746)
|||+||++++++||.|+++++++.++++++++++++++|++.+|+.+++++++++++|+||+++ +||+||+|++|+||
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp 716 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---------CCC--------CcccC--chhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004539 688 NFHTYKILLKIQYADISP---------IVN--------GMRTD--SGFREVCALVAMVFGYRLLAYLSLRKMK 741 (746)
Q Consensus 688 ~~yafeal~~nef~~~~~---------~~~--------g~~~~--~~~~~~~iL~~~~~~f~~l~~~~L~~~~ 741 (746)
++|||||++.|||.+... ... |+..+ +.|.++++|++++++|++++|++|++++
T Consensus 717 ~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 717 LSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999965421 111 23222 3478999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.5e-92 Score=879.71 Aligned_cols=560 Identities=29% Similarity=0.472 Sum_probs=466.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~ 227 (746)
.++++||+|+|..+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987667
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.+|||+|+|.+++.+||+|||.|++.++.|...+++++.++++++++.+||.+++|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88899999999999999999999999988876666677778889999999999999999998543 38999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC-eEEEecCH----H
Q 004539 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (746)
Q Consensus 308 ~aL~~~p~-illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (746)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999997778899999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHH
Q 004539 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (746)
Q Consensus 382 ~~~~~f~~~G~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (746)
++++||+++|+ +||++.|||||++|+++....... ..+. .+.+..++..+.. .+...
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~----~~~~-------~~~~~~s~~~~~~--------~~~~~--- 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA----NQDY-------HEVWRNSSEYQAV--------KNELD--- 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch----hccH-------HHHHhcCHHHHHH--------HHHHH---
Confidence 78999999996 999999999999999864321100 0000 0001111000000 00000
Q ss_pred HhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 004539 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (746)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~ 539 (746)
....+...... .........+.++||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++
T Consensus 1052 --~~~~~~~~~~~--~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAED--DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 00000000000 0000122357789999999999999986 799999999999999999999999999975 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 004539 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (746)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~-~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~ 618 (746)
++|.|++|+++++.++. ....++.|+.||.+| +|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+++
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988876654 346778888988885 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHH
Q 004539 619 AGP-------FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNF 689 (746)
Q Consensus 619 ~~~-------Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~ 689 (746)
+.. |++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||+++ +||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 766 9999999999999999999999999999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCC----------------------------------------C------C--------CcccCch
Q 004539 690 HTYKILLKIQYADISPI----------------------------------------V------N--------GMRTDSG 715 (746)
Q Consensus 690 yafeal~~nef~~~~~~----------------------------------------~------~--------g~~~~~~ 715 (746)
|+|++++.|||.+.... + + |+..++.
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~ 1365 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGR 1365 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccccc
Confidence 99999999999763200 0 0 2223456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004539 716 FREVCALVAMVFGYRLLAYLSLRKMKL 742 (746)
Q Consensus 716 ~~~~~iL~~~~~~f~~l~~~~L~~~~~ 742 (746)
|.|+++++++++++ ++++++|++..+
T Consensus 1366 w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1366 WRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred ccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 88999999999999 888888877543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-92 Score=832.02 Aligned_cols=546 Identities=30% Similarity=0.500 Sum_probs=467.9
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEecCCcCCCCCCH
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~~l~~~lTV 246 (746)
+.+++|+||++.++||.++||||+||||||||||+|+||...+..+|+|++||.|.+ +.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 667899999999999999999999999999999999999877778999999999998 6788999999999999999999
Q ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 004539 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSG 325 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p-~illLDEPTsg 325 (746)
||.|.|+|.+|.|.+++.+++.+.|+++++.++|++++|.+||..+ .|||.+||||++||.+|+.|| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999887 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEecCH----HHHHHHHHhcC-CCCCCCCC
Q 004539 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SEAMAYFSSIG-CSPQIAMN 399 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G~~----~~~~~~f~~~G-~~~~~~~n 399 (746)
||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||.|+. +.+++||+++| .+||...|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 9999999999999999999999999999999999999999999996 799999986 45788999997 78998889
Q ss_pred hHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHHHhhhcCCCCCcHHhhhhcC
Q 004539 400 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 479 (746)
Q Consensus 400 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (746)
||||++|++...... + ...+.++.|..++. |++..+ +-+++..+.+. +....
T Consensus 1041 PA~~mLevi~~~~~~-----~------~~~D~a~~w~~S~e-----------~k~~~e--~v~~l~~~~~~----~~~~~ 1092 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEA-----S------LSVDFAEIWKNSEE-----------YKRNKE--LVKELSQPPPG----FSTDL 1092 (1391)
T ss_pred hHHHHHhhccccccc-----c------cCccHHHHHhccHH-----------HHHHHH--HHHHHhcCCcc----CCccc
Confidence 999999998642111 0 00011111111111 111101 11122222221 11122
Q ss_pred CCCCCcCCcHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004539 480 SPKRNWGASWIQQYTILFRRGIK-EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (746)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~-~~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (746)
..++++..|+|.|++.+++|++. .||+|.+.++|++..++.||++|+.||+.+. +..++||.+|++|..+++.+-...
T Consensus 1093 ~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~-~~q~lqn~m~a~yma~v~~~~~~~ 1171 (1391)
T KOG0065|consen 1093 EFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH-NVQGLQNAMGAAYMATVFSGPNNN 1171 (1391)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC-cHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34456889999999999999987 5899999999999999999999999999984 688999999999998887554333
Q ss_pred HHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004539 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 559 ~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
......+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|.|+++|+..++.+|++|++.++++.++.++
T Consensus 1172 ~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~ 1251 (1391)
T KOG0065|consen 1172 QLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTT 1251 (1391)
T ss_pred hhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 23456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC----------
Q 004539 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI---------- 706 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~---------- 706 (746)
+|+++.+++||.++|..+.+++..++.+|+||++| .||.||+|++|+||+.|..++++..++.|.+..
T Consensus 1252 ~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~ 1331 (1391)
T KOG0065|consen 1252 LGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFD 1331 (1391)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccC
Confidence 99999999999999999999999999999999997 799999999999999999999999999874321
Q ss_pred -CCCc----------------ccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004539 707 -VNGM----------------RTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 707 -~~g~----------------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
+.|. ..+......++.+++.+++.+++.+.+|+.++.
T Consensus 1332 pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1332 PPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred CCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence 1121 111112234677889999999999999988764
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-85 Score=770.14 Aligned_cols=554 Identities=29% Similarity=0.500 Sum_probs=463.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc-cCcEEEEecCCcCCCCCCH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~-~~~i~yv~Q~~~l~~~lTV 246 (746)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23689999999986533 5779999999999999999
Q ss_pred HHHHHHHHhccCCCC----CcHHHHHH-HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004539 247 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
+|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||++|+...||+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999988732 23333332 5678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCCh
Q 004539 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~~np 400 (746)
+|+|||+.++.++++.|+++++. +.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999875 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHH-HHhhhcCCCCCcHHhhhhcC
Q 004539 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAEN-EKKKLMAPIPLDEEIKAKVS 479 (746)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 479 (746)
|||+.++++....... ..... .........+..+ .+.+..... ...+... +.+...+.+..
T Consensus 367 ADfLt~vts~k~~~~~-----------~~~~~-~~~~~~~~~ef~~----~~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQY-----------WNKRS-KPYPYTSVSEFAE----YFLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCcccccc-----------ccccC-CCcccCCHHHHHH----HHhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 9999999873211000 00000 0000001122222 222111110 1111111 11111122233
Q ss_pred CCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004539 480 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (746)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (746)
.....|..+.|.|++.|++|.++. .||..++..++++.+++|+|+|++|++.+-.+..+.+.|.|++||.+++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 455678899999999999999986 456566778999999999999999999873455778999999999999987776
Q ss_pred HHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004539 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 559 ~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
+..+....+.||||+|||...+|+|+||.++.+++++|+.++..++|.+|+||++||.+++++||.++++++++++|+.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC----------
Q 004539 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI---------- 706 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~---------- 706 (746)
+++++++++++...|++++++.++.+.+++||+|| +||+||+|++|+||+.||||+++.|||.+....
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 99999999999999999999999999999999998 799999999999999999999999999763110
Q ss_pred -------------CCC--------c-------ccCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004539 707 -------------VNG--------M-------RTDSGFREVCALVAMVFGYRLLAYLSLRKMK 741 (746)
Q Consensus 707 -------------~~g--------~-------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~ 741 (746)
..| + +..+.|++++|++|+.++|.++..+++-|.+
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 011 1 1245678999999999999999999998876
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-61 Score=545.91 Aligned_cols=357 Identities=25% Similarity=0.375 Sum_probs=296.1
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccc-eecchhc
Q 004539 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVS 86 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (746)
-++.++.||+.|.++.+|+|.+++.+|||+|+++..|.++|.++++...+.+.|++.+++.+ +.++.+..+ ..+.-++
T Consensus 313 rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~ 391 (716)
T KOG0058|consen 313 RKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILF 391 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999 555555555 4555578
Q ss_pred hhhhhhhhcccccchhhhhcccccChhhhccC----------------CCCCCCCCcccccccCCCCCCCCCCC-CCCce
Q 004539 87 SGAALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEP-TLPIY 149 (746)
Q Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (746)
+|+.++..|+++.|.+.+|..|++...+.... +.|+..|-.+.++.. ....| .....
T Consensus 392 ~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~------G~~~p~~~~G~ 465 (716)
T KOG0058|consen 392 YGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT------GTLAPDHLQGV 465 (716)
T ss_pred hccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC------Cccccccccce
Confidence 99999999999999999999999876543221 222222222111111 10111 23457
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+|+||+|+|+. +++.+||||+||+|+|||++|||||||+||||+.++|. |+++|. +|+|++||+|+++
T Consensus 466 IeF~~VsFaYP~-----Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 466 IEFEDVSFAYPT-----RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHK 538 (716)
T ss_pred EEEEEeeeecCC-----CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHH
Confidence 999999999953 35778999999999999999999999999999999999 688765 8999999999863
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.+|++||+|.|||.||.. ||+|||.|+......+++..+.+.+.+++.+..+ ++.+||.+|++. ..||||||||++
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VGEkG-~qLSGGQKQRIA 614 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVGEKG-SQLSGGQKQRIA 614 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCcc-ccccchHHHHHH
Confidence 578999999999999975 9999999996521111222334445566777755 899999999764 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||||++||.||||||.||+||++++..+.+.|.++.+ ++|||+|.|++++ .+.+|+|+++++|++++.|+|+|+++
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999999999876 7999999999875 68899999999999999999999985
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=421.57 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++| ++..+|+|||++|++||+++|+||||||||||||||.| +. .+++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999999 57789999999999999999999999999999999997 33 456999999998764
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..+|+++|+|||+..|||++||.||+.++...- ...++++.++++.++|+++||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999986432 246788889999999999999998885 578999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. ..+.+|||++|++|++++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999764 6788999999999999999999886
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-52 Score=495.78 Aligned_cols=364 Identities=24% Similarity=0.329 Sum_probs=274.8
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 004539 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
++++++.++.-+++-++|||++++.+||.+|+|+..+.+||++-+......+.+++...|...-....+-...-...+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999988888877766665554211222223344556788
Q ss_pred hhhhhhhcccccchhhhhcccc----------cChhhhccCCCCCCCCCcccccccCCCCCCCC---CCCCCCceEEEEe
Q 004539 88 GAALSRASSASLGLSFSFTGFT----------MPPDEIADSKPFSDDDIPEDIEAGTRERPKFQ---TEPTLPIYLKFTD 154 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~n 154 (746)
|+.+...+...-|......... .|..+....-..+..++-+.++..++..+... ........++|+|
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~n 355 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRN 355 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEE
Confidence 8888888766665554433222 12221111111112222222222222111110 1112345799999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 004539 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~ 230 (746)
|+|+|+. +++..||+|+|+.|++|+.+||+|||||||||++++|. |+++|. +|+|++||.|+. +.+|++
T Consensus 356 V~FsYPs-----Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 356 VCFSYPS-----RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred EEecCCC-----CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHHHhh
Confidence 9999953 35678999999999999999999999999999999999 577765 899999999985 357899
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH
Q 004539 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
||.|.|+|.||. .||+|||.|+......+++.++.+.+.+.+.+..+ ++..||.+|+..+. ||||||||++|||||
T Consensus 429 iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~l--p~g~~T~vge~g~q-LSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 429 IGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKL--PDGYDTLVGERGVQ-LSGGQKQRIAIARAL 504 (1228)
T ss_pred cCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhh--HHhhcccccCCCCC-CChHHHHHHHHHHHH
Confidence 999999999996 69999999984221111122222333355566554 88999999987654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++||+|||||||||+||++++..+.+.|++..+ |+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999998764 9999999999875 46699999999999999999999986
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-50 Score=405.96 Aligned_cols=220 Identities=30% Similarity=0.566 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+|+|||+.| +++.+++|+|++|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++++
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 37999999998 46789999999999999999999999999999999995 5554 58999999999864
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
++|++||||-|.-.|||++||.|||.+...+. ..+++..+++++|+++.+||++. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 58999999999999999999999999987654 45788899999999999999752 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. +.++++|||++|++|+++..++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 999999999975 68899999999999999999999998
Q ss_pred HH
Q 004539 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 74
No 14
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.1e-51 Score=478.44 Aligned_cols=362 Identities=23% Similarity=0.327 Sum_probs=276.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++..+.-++..+...|.+.+.+|+++.+.++....+..++..+....+.+..--......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566777889999999999999999999999999998887777653333333333345555666777789999
Q ss_pred hhhhhcccccchhhhhcccccC----hhhhccCCC------CCCCCCcccccccCCCC-CC-CCCCCCCCceEEEEeEEE
Q 004539 90 ALSRASSASLGLSFSFTGFTMP----PDEIADSKP------FSDDDIPEDIEAGTRER-PK-FQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~nvs~ 157 (746)
.++..+.+++|.+..|..+... ...+.+.-. ....++.+.+..+.+.. +. ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 9999999999999999865543 222221100 00111111122221111 11 123344556899999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004539 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|. ..+..+|+|+|++|+|||.+||+|+||||||||+|+|+|. +. +.+|+|++||.|+.+ .+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~-p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YK-PQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2334799999999999999999999999999999999985 44 458999999999863 57999999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004539 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+||+.+|.. |++||+.++......+.+-++...+.+++.+..+ +..+||.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--ccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999974 9999999874321111122233334456666654 78899999865 457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004539 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++. .+.||+|+||++|++++.|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999865 8999999999874 789999999999999999999999874
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-50 Score=412.04 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=198.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||+|+|.+ +.. |++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 37899999988431 1234579999999999999999999999999999999996 444 569999999988752
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..|++||++||++.|+...||.||+.|...+. ..++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46789999999999999999999999998765 36789999999999999999988874 5789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||||+.+|+||++|||||+|||.+...|++.|+++.++ |.||+++||++. .+.+.||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999765 999999999975 57889999999999999999999
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8874
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-48 Score=391.71 Aligned_cols=221 Identities=32% Similarity=0.516 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|++++|+++| +++.||+|||++|++||+++||||||+|||||||+|.|.+. +.+|+|.++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 67899999999999999999999999999999999999653 568999999998742
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
+.++++|++||+..||..+||+||+.|..+- ...++++..++.+..-|+.+||... +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 4578999999999999999999999997542 3457788888899999999999865 1235788999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
+||++||||++.||+|||+||||+||||.++..+-++++++.+. |.|++++|||.. +++..||++++|.+|+|+..|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 999999999976 4889999999999999999999
Q ss_pred HHHHHH
Q 004539 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++|+.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.6e-48 Score=414.17 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.++++||+++| + ++.+|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 47899999998 4 5789999999999999999999999999999999999654 468999999998764
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++++||++|++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56789999999999999999999999999887542 24567789999999999985444 3568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+||+||+.+|++|||||||+||||.++.++.+.|++++++| +||+++||++. ++...||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 58888999999999999999999998
Q ss_pred HHHHHh
Q 004539 384 MAYFSS 389 (746)
Q Consensus 384 ~~~f~~ 389 (746)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776654
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=419.43 Aligned_cols=234 Identities=27% Similarity=0.466 Sum_probs=208.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+++| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. .+++|+|.+||++++.
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--QPSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCC
Confidence 369999999999 4678999999999999999999999999999999999943 3569999999999974
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+|.||+|||+..|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 46889999999999999999999999998733 334567788999999999999987764 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||. ++.+.++|||++|++|+|...|+++|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999765 99999999995 4678999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHHh
Q 004539 385 AYFSSIGCSPQIAMNPAEFLLDL 407 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~ 407 (746)
..|...=.|||+-+.
T Consensus 226 --------~~P~~~fVA~FiG~~ 240 (352)
T COG3842 226 --------ERPATRFVADFIGES 240 (352)
T ss_pred --------hCcchHHHHHHhCcc
Confidence 345555567777653
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-48 Score=414.87 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. .+++|+|.++|+++++ .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCh
Confidence 58999999998 2222999999999999999999999999999999999953 3569999999999974 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+|.||+|||+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.|+|++..|+. +++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 5789999999999999999999999998765 357888999999999999999988864 67999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|.+|||. .++..++|||++|++|+|...|++.|+.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999765 89999999996 46889999999999999999999999854
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.9e-48 Score=402.03 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++||++.| +++++|+|+||++++||+++|+||||||||||||+|+|.+. +.+|+|.+||+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 48999999999 46789999999999999999999999999999999998653 46899999999985
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
+++.+++|||||.+.....+||+|-+.++..-.... ....+++++.++++++.+|+.+.+++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 356789999999988777899999999985321111 1224455668999999999999988754 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|.|||||+.+|+||+||||||.||...+.++++.++++++ +|+|||+++||+.. ..++||++++|++|+++..|++++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999985 49999999999875 679999999999999999999988
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
No 21
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-49 Score=471.75 Aligned_cols=357 Identities=23% Similarity=0.352 Sum_probs=274.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+-+++.++...++...|.|..++.+||++++.+.--...|.+.+.+....+.++++-.|.-.-.+.+...-......++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999999999999999999888877777776666666553445555556677778899
Q ss_pred hhhhhhcccccchhhhhc-ccccChhhhccCCCCCCCCCcc----------cccccCCCCCC---CCCCCCCCceEEEEe
Q 004539 89 AALSRASSASLGLSFSFT-GFTMPPDEIADSKPFSDDDIPE----------DIEAGTRERPK---FQTEPTLPIYLKFTD 154 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~l~~~n 154 (746)
+.++..+..+....+--. .+++-...+..... ..+|+.+ .++..++..+. ....+.....++|+|
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s-~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~ 992 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASS-YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRN 992 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEee
Confidence 999998866554433222 11111111110000 0011111 01111111111 001223445799999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCc
Q 004539 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~ 230 (746)
|+|.|+ .+++.+||+|+|+++++|+.+||||||||||||.+.+|- |+++|. +|.|.+||+|+++ .+|++
T Consensus 993 V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 993 VSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred eEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHHHHh
Confidence 999995 346789999999999999999999999999999999999 788765 8999999999863 67999
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHH-----HHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+|.|.|+|.||. -|++|||.|+.. + .+.++ +.+.+++.+. +|++.+||.+|++.. +||||||||++
T Consensus 1066 i~lVsQEP~LF~-~TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFN-GTIRENIAYGSE----E-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QLSGGQKQRIA 1136 (1228)
T ss_pred cceeccCchhhc-ccHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cCCchHHHHHH
Confidence 999999999997 599999999921 1 33333 3334555555 569999999997654 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++||+||||||.||+||+++++.+.+.|.+.. .|+|.|+++|++++ .+.||.|+|+++|+|++.|+|+++++
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999999999999999999975 49999999999985 68899999999999999999999986
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=393.52 Aligned_cols=219 Identities=31% Similarity=0.547 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++|+++.|. .+ ++|+||||++++|++++|+||||||||||+|+|.|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y~-------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG-------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC-------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 3699999999992 23 69999999999999999999999999999999999653 46899999999876543
Q ss_pred -cCcEEEEecC---CcCCCCCCHHHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 228 -~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
+.+||||||. |.-|| +||+|.+..+...+.. ... .+.+++.++++|+++|+.+.+|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 34577 7999999987433221 122 23447889999999999999998875 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|||.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||+.. +.+.||+|++|+ ++++..|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999874 889999999995 6889999998
Q ss_pred HHHH
Q 004539 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-47 Score=386.67 Aligned_cols=210 Identities=34% Similarity=0.561 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||++.|..++ ....+|+++|++|++||+++|+|||||||||||++|.|.. . +++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~-pt~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-K-PTSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCceEEECCEEcCcCCHH
Confidence 67899999884322 2357999999999999999999999999999999999854 3 469999999988752
Q ss_pred ---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. .+++||||||+..|+|++||+||+.+...+.. .+....+++++++++.+||++..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 2 35679999999999999999999998765442 2232567778899999999876652 34679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||||+.+|++|+.||||.+||+.++.+|+++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999984
No 24
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=388.10 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+++++|++.| +...+|+|+|++|++||+++|+||||||||||||+|+|.. .+.+|+|.++|.++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~--~p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE--KPTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCccc-CCCC
Confidence 58899999998 3478999999999999999999999999999999999954 35689999999998 4556
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
..++||||++.|+|.+||+||+.++...+. .++++.++++++.|+.+||.+..|. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999987542 4566777799999999999988774 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
||+.+|+||+||||+++||+.++.++.+.|.++.++ ++||+++|||.. |...++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999998754 899999999976 566899999999984
No 25
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-48 Score=454.14 Aligned_cols=362 Identities=23% Similarity=0.316 Sum_probs=260.5
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 004539 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
.+..++.++..++..+...|..++.+++|+|+.+..+.+++.++..+......+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888999999999999999999999999999988888876655544432111111111011111111223334457
Q ss_pred hhhhhhhcccccchhhhhcccccCh----hhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEE
Q 004539 88 GAALSRASSASLGLSFSFTGFTMPP----DEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~ 157 (746)
|..+...+.++.|....|..+.... ..+..... .+..++.+.+...+...............++|+||+|
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf 336 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSF 336 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEE
Confidence 7777777778888877777554322 11111000 0001111111111100000000111234599999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004539 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
.|+ +++++|+|+|++++|||.+||+||||||||||+++|.| ++++ .+|+|.+||+|+++ .+|++|+|
T Consensus 337 ~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 337 SYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHHHHhccE
Confidence 992 25789999999999999999999999999999999996 5555 58999999999863 57899999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004539 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+||+.+|. -||+|||.++......+++.++.+.+.+++.++.+ +++.||.+|+. ...||||||||++||||+++|
T Consensus 408 V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 408 VSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred Ecccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHHHHHhcC
Confidence 999999998 69999999984321111222233333445556655 77899999954 456999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+||+||||||+||+.++..+.+.++++. +++|+|+++|++++ + +.||+|++|++|++++.|+|+|+++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999887 57899999999864 4 5599999999999999999999986
No 26
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-48 Score=453.09 Aligned_cols=352 Identities=19% Similarity=0.209 Sum_probs=237.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++.++.++...|.+...+++|+++.+....+++.+..........+.................-..+.-+..|+
T Consensus 190 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (588)
T PRK11174 190 ANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFG 269 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888889999999999999999999999999887766554432211100000000000000000001112222
Q ss_pred hhhhhcccccchh-hh------hc------ccccChhhhccC-------CCCCCCCCcccccccCCCCCCCC-CCC-CCC
Q 004539 90 ALSRASSASLGLS-FS------FT------GFTMPPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQ-TEP-TLP 147 (746)
Q Consensus 90 ~~~~~~~~~~~~~-~~------~~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 147 (746)
... .+.++.|.+ .+ +. .+..|...+... .+ +..++.+.++..+...+... ..+ ...
T Consensus 270 ~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 347 (588)
T PRK11174 270 FSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVG-AAESLVTFLETPLAHPQQGEKELASNDP 347 (588)
T ss_pred HHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCCCccccCCCCC
Confidence 222 255555532 11 00 011222221110 00 00111111111110000000 001 112
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++|+||+|.|. +++++|+|+|++++|||.+||+||||||||||+++|+|. + | .+|+|.+||+++.+
T Consensus 348 ~~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-~-p-~~G~I~i~g~~i~~~~ 417 (588)
T PRK11174 348 VTIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-L-P-YQGSLKINGIELRELD 417 (588)
T ss_pred ceEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-C-C-CCcEEEECCEecccCC
Confidence 3599999998762 245799999999999999999999999999999999984 4 4 48999999998853
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
.+|++|+||+|++.+|+. |++|||.++. | +.++++.. ..+++.++. |++..||.+|+. ...|||
T Consensus 418 ~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~-G~~LSG 488 (588)
T PRK11174 418 PESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQ-AAGLSV 488 (588)
T ss_pred HHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--cccccccccccC-CCCCCH
Confidence 578899999999999975 9999999873 1 23333322 233444444 477889999875 456999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999986 4899999999985 35789999999999999999
Q ss_pred CHHHHHH
Q 004539 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+|+|+++
T Consensus 566 ~~~eL~~ 572 (588)
T PRK11174 566 DYAELSQ 572 (588)
T ss_pred CHHHHHh
Confidence 9999874
No 27
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-47 Score=380.26 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+..|+ +++++|+|||++|++||++||+||||||||||||+|+|. .+ +.+|+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999983 467899999999999999999999999999999999984 33 458999999987642
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+.++.+.|+++|+.+.+.++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46789999999999999999999999886443221 1223455677889999999998887654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||+|||+|||||+.+|+|++.|||+++|||.+++++|+.|+++++ +|.|||++.|+... ..++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999976 49999999999764 67899999999999999
Q ss_pred EecCHHHHHHH
Q 004539 376 YFGKASEAMAY 386 (746)
Q Consensus 376 ~~G~~~~~~~~ 386 (746)
|.|+++|+-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999987554
No 28
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-48 Score=462.72 Aligned_cols=354 Identities=21% Similarity=0.320 Sum_probs=256.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
++.++.++..++..+.+.|..++.+|||.++.+..+.++|.++..+......+.....+...........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999888766655443333333221222222223344556689
Q ss_pred hhhhhhcccccchhhhhcccccChh----hhccCCC------CCCCCCcccccccCCCCCCCCCCC-CCCceEEEEeEEE
Q 004539 89 AALSRASSASLGLSFSFTGFTMPPD----EIADSKP------FSDDDIPEDIEAGTRERPKFQTEP-TLPIYLKFTDVTY 157 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~nvs~ 157 (746)
+.++..+.++.|.+.++..+..... .+..... .+..++.+-++..+...+.....+ .....++|+||+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf 486 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSF 486 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEE
Confidence 9999999999999888876653221 1110000 000011111111110000000011 1223699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004539 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|+. .+++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .++++|+|
T Consensus 487 ~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 487 SYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred ECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 9932 1246799999999999999999999999999999999984 44 458999999999853 56889999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHH
Q 004539 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
|+||+.+|+ .|++|||.++.. ..+++ ++.++++..+ +++..||.+|+. ...||||||||++|
T Consensus 560 v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlal 628 (711)
T TIGR00958 560 VGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAI 628 (711)
T ss_pred EecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHH
Confidence 999999997 599999998632 12222 2333444433 356788988865 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++|+|||||||||+||+++++.+.+ .. ..+++|+|+++|+++ ..+.||+|++|++|++++.|+|+|+++
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999998 22 235899999999986 357799999999999999999999875
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-47 Score=391.83 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE---eCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~---~~~~ 225 (746)
+|+++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ |.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47788888877 46679999999999999999999999999999999999543 56899999999 5443
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
...|+||||+|+..+|++|||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..+ .++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23578999999999999999999999998766 334567788899999999999987666 5678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|++++|||+. ++++.||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999965 6899999999999999999999999
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
No 30
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.7e-48 Score=459.48 Aligned_cols=351 Identities=21% Similarity=0.245 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888899999999999999999888888777665544443321111111111112222223344456888
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEE
Q 004539 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
.++..|.++.|.+..+..+.. |...+..... ....++.+.++..+...............++++||+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y 461 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY 461 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEc
Confidence 888889999998887765432 2222211100 000111111111110000000001112369999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEe
Q 004539 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~ 235 (746)
+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|++||||+
T Consensus 462 ~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 462 R------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred C------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 3 2346799999999999999999999999999999999985 44 458999999999863 5789999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHH
Q 004539 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
||+.+|+. |++|||.++.. .+++ ++.++++..| +++..||.+|+. ...||||||||++|||
T Consensus 534 Q~~~lf~g-TI~eNi~~~~~------~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialAR 601 (686)
T TIGR03797 534 QNGRLMSG-SIFENIAGGAP------LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIAR 601 (686)
T ss_pred cCCccCcc-cHHHHHhcCCC------CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHH
Confidence 99999975 99999998632 2222 2333343333 356789999865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+++|+||+||||||+||+.++.++++.|+++ ++|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999886 589999999985 357899999999999999999999864
No 31
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.5e-47 Score=364.89 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+|+||++.|. ..+++|+||||+|++||++-|+||||||||||||+|.+.. .++.|+|+++|.+++.
T Consensus 1 mI~f~~V~k~Y~-------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e--~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP-------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE--RPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC-------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh--cCCCceEEECCeecccccc
Confidence 378999999992 2367999999999999999999999999999999999854 3568999999999852
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+|++||+|+||..|.++.||+||+.|+.... ..++.+.++++.++|+.+||.+..+. .+.+|||||+
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47899999999999999999999999987654 35677888999999999999988775 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.|||.. -+-++-.+++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999953 3555667999999999987654
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-47 Score=371.13 Aligned_cols=233 Identities=24% Similarity=0.437 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC----CCccEEEECCEeC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~ 223 (746)
..++++||++.| +++.+|+|||+.|++++++|||||||||||||||++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 358999999998 5788999999999999999999999999999999998 44432 2479999999998
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ++|++||+|||.|.-|| +|++||+.|+.++.. ..+++.++.|+..|+...|.+.-..++. ....+||
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LS 151 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLH-KSALGLS 151 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCC
Confidence 53 57999999999999999 899999999987653 2236677888999988887643332332 3346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||+||++|||||+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999985 789999999976 46789999999999999999
Q ss_pred cCHHHHHHHHHhcCCCCCCCCChHHHH
Q 004539 378 GKASEAMAYFSSIGCSPQIAMNPAEFL 404 (746)
Q Consensus 378 G~~~~~~~~f~~~G~~~~~~~npad~~ 404 (746)
|+.+++. ..|.+.-..||+
T Consensus 230 g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cCHHhhh--------cCccHHHHHHHh
Confidence 9998873 456665566665
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-47 Score=368.29 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|++.+++++|. ...++++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 378899999882 23359999999999999999999999999999999998664 458999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..|++||.++.+..++..||++|||.|.+++. .+.+.+.+++++++.+.|+|.++.|+++| ++|.|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 46899999998889999999999999998875 46778888999999999999999999876 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||||++||++++|||||||||..+...+.+.++++.++|++||++||.+. ++..+||+|++|++|++++.|+.+++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999988999999999964 6888999999999999999999988764
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-45 Score=397.98 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999543 468999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..+++||||+|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 35678999999999999999999999876543 2334445567889999999998888765 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999886
Q ss_pred H
Q 004539 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 5
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-48 Score=420.71 Aligned_cols=340 Identities=26% Similarity=0.390 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccee----cchhchhhhhhhh
Q 004539 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLE----LDEVSSGAALSRA 94 (746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~ 94 (746)
-.+...|-+++.+-++||.|+.+.-|.+||...+.+--+.+.+-...-+- .+..|-.+= .--...|.+=...
T Consensus 211 n~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~----lnfgQ~~iFsv~~~~im~l~~~gi~~ 286 (591)
T KOG0057|consen 211 NSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAF----LNFGQKAIFSVALTFIMVLGSNGIAA 286 (591)
T ss_pred hHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455788899999999999999999999998887655544321111111 112221110 0011233332344
Q ss_pred cccccchhhhhcccc----cChhhhccC-----------C-CCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004539 95 SSASLGLSFSFTGFT----MPPDEIADS-----------K-PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 95 ~~~~~~~~~~~~~~~----~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
|.+..|.+.....+. +|...+... . -+...+...++..+. .+ .. ..+..|+|+||+++
T Consensus 287 ~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~--~~---i~-~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 287 GKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAA--LP---IE-LFGGSIEFDDVHFS 360 (591)
T ss_pred ccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhcc--CC---cc-cCCCcEEEEeeEEE
Confidence 444444443333221 221111100 0 000001111111110 00 01 12335999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|++||+++.+ .+|+.||||
T Consensus 361 y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 361 YG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred eC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 92 34559999999999999999999999999999999995 554 58999999999853 578999999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 314 (746)
|||..||.+ ||.+||.|+......+.+-+..++...++.+.. +++.++|.+|++. ..|||||||||+||||+++||
T Consensus 431 PQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 431 PQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred CCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhcc-cccccchHHHHHHHHHHhcCC
Confidence 999999975 999999998532211111112222234445544 4788999999765 459999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+++|||||+||++++.++++.+.+.. .|+|+|++.|+.+ ..+.||+|++|++|++.+.|+|+|+++
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999954 4999999999976 468899999999999999999999987
No 36
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.8e-45 Score=400.64 Aligned_cols=220 Identities=25% Similarity=0.418 Sum_probs=192.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ...+.+|+||||+|++||+++|+||||||||||+|+|+|.. ++++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~--~p~~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 2 IKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RPTSGSVIVDGQDLTTLSNS 75 (343)
T ss_pred EEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCHH
Confidence 7899999998311 12357999999999999999999999999999999999954 3568999999998752
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..+++|+|++|++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|. ++.+|||||||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQ 147 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHH
Confidence 24678999999999999999999999976532 23456667789999999999887775 45689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999975 577899999999999999999998
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~v~ 229 (343)
T TIGR02314 227 EIF 229 (343)
T ss_pred HHH
Confidence 874
No 37
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.8e-47 Score=453.41 Aligned_cols=358 Identities=23% Similarity=0.352 Sum_probs=255.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++..+..++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888899999999999999999988888887766554333222111111110111111222234445688
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCC--CCCCCCCCCceEEEEeEE
Q 004539 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERP--KFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~nvs 156 (746)
+.++..|.++.|.+..|..+.. |...+..... ....++.+.++..+...+ .....+.....++|+||+
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEE
Confidence 8888889999998888765442 2222211000 000111111111110000 000011122369999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004539 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .+|++|+
T Consensus 471 f~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 471 FAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhccE
Confidence 9993 2346799999999999999999999999999999999985 44 458999999999853 5789999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++.. ..++++..+ .+++.++. +++..||.+|+. ...||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~gl~T~i~e~-G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVRR--HPDGLDMQIGER-GRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHHh--CcccccceecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 123332222 23333443 467789999865 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
|||+++|++++||||||+||+.++.++.+.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+|+|+++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999865 8999999999863 578999999999999999999998763
No 38
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-47 Score=455.07 Aligned_cols=354 Identities=22% Similarity=0.283 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++-++..+...|...+.+|+|+++.+....+++.+...+......+.....+.........+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666678888899999999999999999988888876665544433221111111101111122222344456888
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCC-CC-------CCCCCCCCceEE
Q 004539 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRER-PK-------FQTEPTLPIYLK 151 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~l~ 151 (746)
.++..|.++.|.+..+..+.. |...+..... ....++.+.+...+... .. ....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888889999998888775543 2222211100 00001111111100000 00 000011224699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 004539 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999985 44 458999999999853 57
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
|++|+||+|++.+|+ .|++|||.++. + ..++++..+ .+++.++. +++..||.+|+. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~~--lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDADLVRACKDAAIHDVITS--RPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHHh--CcCcccceeccC-CCCCCHHHHH
Confidence 899999999999997 59999998752 1 123322221 12233333 466788999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||||+++|+|||||||||+||+.++.++++.|++ .++|+|++||+++. .+.||+|++|++|++++.|++++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999863 57799999999999999999999
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
No 39
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.7e-47 Score=443.96 Aligned_cols=358 Identities=20% Similarity=0.277 Sum_probs=250.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++.+++.++..+...|.....+++|+++.+....+++.+..........+..............+..-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888899999999999999999988888888766654443322111111111111111111223334567
Q ss_pred hhhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004539 89 AALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+..+..+.++.|....+..+. .|...+..... ....++.+.+...+.........+..+..++++||+|+
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~ 350 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFT 350 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEe
Confidence 777777888888875544332 23332211100 00011111111010000000001111236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ .+++++|+|+|++|++||.+||+||||||||||+|+|+|.. + +.+|+|.+||+++++ .++++|+||
T Consensus 351 y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 351 YP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D-IDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred cC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 83 23467999999999999999999999999999999999853 3 458999999999853 568899999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+||+.+|+ .|++|||.++. ++..++++..+ ..++.++. |++..||.+|+. ...||||||||++||||
T Consensus 423 ~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~--lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 423 SQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFINK--MDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred ccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHh--cccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 99999997 59999999862 22223332222 12233333 467789999865 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999854 799999999985 467899999999999999999999874
No 40
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-47 Score=454.58 Aligned_cols=356 Identities=21% Similarity=0.282 Sum_probs=254.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
++.++.+++-++..+...|.+.+.+|+|+++.+....+++.++.........+.....+.....+...+.-..+.-+..|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888889999999999999999988888877766544443322111111110111111222234455689
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCC-C-CCCCCCCCCceEEEEeEE
Q 004539 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRER-P-KFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~nvs 156 (746)
+.++..|.++.|.+..|..+.. |...+..... ....++.+.+....... . .....+.....++++||+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEE
Confidence 9999999999999888876543 3222211100 00011111111110000 0 000111122369999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004539 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|. .++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|++||+++.+ .+|++|+
T Consensus 481 f~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 481 YSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence 9992 235799999999999999999999999999999999984 44 458999999999753 5788999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++.. + ..++++.. ..+++.++. +++..||.+|+. ...||||||||++||
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~~--lp~gldt~i~e~-G~~LSgGQrQRialA 623 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIEN--MPLGYQTELSEE-GSSISGGQKQRIALA 623 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHHh--cccccCcEecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 1 12322221 223334443 466789999864 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 4899999999986 357899999999999999999999875
No 41
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.9e-47 Score=478.72 Aligned_cols=354 Identities=20% Similarity=0.263 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhhhhh
Q 004539 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (746)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (746)
++.+++.++.++|.+++.+|||+|+.+....++|.+..........+.....+.....+...+.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655443332222222221222233333455667799999999
Q ss_pred cccccchhhhhccccc----Chhhhcc-------C-----CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004539 95 SSASLGLSFSFTGFTM----PPDEIAD-------S-----KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 95 ~~~~~~~~~~~~~~~~----~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+.++.|.+..+..+.. +...+.. . +.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 9999987666432211 1111100 0 0000111111010000000000000111236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---------------------------
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--------------------------- 211 (746)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 942 124579999999999999999999999999999999996 55552
Q ss_pred --------------------------CccEEEECCEeCC----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC
Q 004539 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 261 (746)
.+|+|++||+++. +.+|++||||+|++.||+ .|++|||.|+.. +
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 357899999999999997 699999999732 2
Q ss_pred CcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 004539 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (746)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 336 (746)
.+.++.+ +.+++.++. |++.+||.+|+. ...||||||||++|||||+++|+|||||||||+||+.+++.|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~--LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIES--LPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHh--CccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 233445543 588999999964 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeC----CeEE-EecCHHHHHH
Q 004539 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (746)
Q Consensus 337 ~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 385 (746)
.|+++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
No 42
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4e-45 Score=400.11 Aligned_cols=218 Identities=27% Similarity=0.503 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|.. ++++|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~--~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE--RQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 58999999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.+|||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|++..+. .+++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999986543 24566677889999999999987775 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.+
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 6789999999999999999999998864
No 43
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-45 Score=400.31 Aligned_cols=218 Identities=28% Similarity=0.473 Sum_probs=193.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++|. +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~--~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 489999999982 2457999999999999999999999999999999999954 3568999999998853 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.||||+|++.+||++||+||+.|+.+.+ ..++.+..++++++++.+||++..+.. +++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999986532 235556667899999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999775 899999999975 588999999999999999999999874
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-45 Score=379.17 Aligned_cols=217 Identities=29% Similarity=0.510 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL--RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccChh
Confidence 4789999998 2457999999999999999999999999999999999954 3468999999988642
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++||+|++.+++.+||+||+.++..... ..++++..+++.++++.+||.+..++. ++.|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 246789999999999999999999998753211 123445566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999975 477889999999999999999988
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 753
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=398.17 Aligned_cols=217 Identities=25% Similarity=0.516 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE--KPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 69999999998 3457999999999999999999999999999999999954 3568999999998853 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++|+||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .++.|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999987543 24556677889999999999877664 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++.+++|+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578999999999999999999999875
No 46
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-46 Score=439.12 Aligned_cols=354 Identities=23% Similarity=0.328 Sum_probs=248.9
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++.++..++.++...|..+..+++|+|+.+..+.+++.+...+..+...+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888999999999999999999999988888888776655544332211111110111111111112223455
Q ss_pred hhhhhhcccccchhhhhcccc-----cChhhhccCC------CCCCCCCcccccccCC-CCCCCCCCCCCCceEEEEeEE
Q 004539 89 AALSRASSASLGLSFSFTGFT-----MPPDEIADSK------PFSDDDIPEDIEAGTR-ERPKFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~nvs 156 (746)
+.+. .+..+.|.+..|..+. .|...+.... ..+..++.+.++..+. ..+.....+.....++|+||+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~ 345 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVS 345 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEE
Confidence 5553 5666777766654332 1211111000 0001111111111110 000000001122469999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004539 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|+ .+++++|+|+|++++|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|++|+
T Consensus 346 f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 346 FTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhhee
Confidence 9983 1235799999999999999999999999999999999984 44 458999999999853 5688999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC------CccccccccCccccCCCHHHHHHHHH
Q 004539 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
||+||+.+|+. |++||+.++. + ..+ ++++.++++..++ ++..||.+|+. ...||||||||++|
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 99999999975 9999999863 1 122 2345556666655 45678888865 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|++++.|+|+|+++
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999864 8999999999864 46799999999999999999999875
No 47
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.5e-44 Score=396.31 Aligned_cols=218 Identities=26% Similarity=0.467 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCc--cEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~--G~I~~~G~~~~~- 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+|||||||||||++|+|.. ++.+ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV--KAAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCCEEEEECCEECCCC
Confidence 58999999998 2456999999999999999999999999999999999954 3568 999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|+||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||++..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 24578999999999999999999999987543 245566677899999999998877754 568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++||++. ++..++|+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999975 5788999999999999999999998
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
No 48
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=395.09 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||||+|+|.. ++.+|+|.+||+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE--HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 48899999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++||+|++.+||++||+||+.|+...... ...++++..++++++++.++|++..+. ++.+|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 457899999999999999999999998653211 123455667789999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 899999999975 578899999999999999999999875
No 49
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.4e-44 Score=390.96 Aligned_cols=220 Identities=28% Similarity=0.418 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 34579999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|||++|++.+++.+||+||+.+....+. .+..+..++++++++.++|++..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 356789999999999999999999997654431 233445567788999999998777665 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 678899999999999999999999986
Q ss_pred HH
Q 004539 385 AY 386 (746)
Q Consensus 385 ~~ 386 (746)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
No 50
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-46 Score=431.68 Aligned_cols=355 Identities=25% Similarity=0.335 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004539 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+........+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888999999999999999988888876665443332211111111111111222223444568888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEe
Q 004539 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (746)
++..|.++.|.+..+..+.. |...+..... .+..++.+.++..+...+.. ..+.....++++|++|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCCeEEEEEEEEEcC
Confidence 89899999999888775543 2222111100 00111111111111110000 1111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEec
Q 004539 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (746)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q 236 (746)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 23467999999999999999999999999999999999854 3 458999999998753 46788999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh
Q 004539 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~ 311 (746)
++.+|+. |++||+.+... ..++++. ....++.++.+ ++..||.+|+. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999985 99999986421 1222222 22334555544 55678888754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 312 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998756899999999986 357899999999999999999998764
No 51
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-45 Score=366.00 Aligned_cols=221 Identities=28% Similarity=0.435 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++.|..+. .-.++|+||||+|.+||+++|+|+||||||||.++|+|.. .+.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~--~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE--KPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCCceEEECCcccCcccc
Confidence 589999999994221 1226999999999999999999999999999999999954 3568999999988754
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.|-+|||||. +.|..||++.|.-+... ...++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 35788999999984 78999999999866542 233333 334899999999986433 356789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.+ .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999865 789999999975 58899999999999999999999
Q ss_pred HHHHH
Q 004539 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
No 52
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=372.97 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|++|+|. .+ +.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 588999999982 22 689999999999999999999999999999999999653 45899999999865
Q ss_pred -hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..+++++|||+|+| .+|. -||.|.+.|+.... .+++++.+++++++++.+|+.+.++. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25689999999997 5665 59999999997543 35677788999999999999988775 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++|||.. .+...||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999887 699999999965 58888999999999999999998
Q ss_pred HHHHH
Q 004539 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 87754
No 53
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.7e-44 Score=394.75 Aligned_cols=217 Identities=25% Similarity=0.450 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++.. .
T Consensus 14 ~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~--~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 14 LVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred eEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|++..+.. +.+|||||||||+|
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaL 155 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAI 155 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 4678999999999999999999999986532 234556667889999999998877754 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |+|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 899999999975 578899999999999999999999875
No 54
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.9e-46 Score=442.65 Aligned_cols=356 Identities=23% Similarity=0.338 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666777888889999999999999999999888887776554433321111111100111111122334456899
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCC-CCCCCCCCCceEEEEeEEEE
Q 004539 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERP-KFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~nvs~~ 158 (746)
.++..|.++.|.+..|..+.. |...+..... ....++.+.++..+.... .....+.....++++||+|+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~ 464 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFR 464 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEE
Confidence 999999999998888775532 3222211100 000111111111110000 00011122346999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|. ..++++|+|+|+++++||.+||+|+||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|++|+||
T Consensus 465 y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~-p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 465 YA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-T-PQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred cC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 93 23457999999999999999999999999999999999853 3 458999999999853 578899999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+|++.+|+ .|++|||.++. + ..+.++.. ..+++.++. +++..||.+|+. ...||||||||++||||
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRIAIARA 607 (694)
T ss_pred ccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999998752 1 12222222 123344443 366788988865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|++||||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 58999999999863 46799999999999999999999874
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=368.88 Aligned_cols=215 Identities=28% Similarity=0.475 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL--KPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecCcChHH
Confidence 4789999998 3457999999999999999999999999999999999964 3468999999987642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|++..++. ++.||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4568999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999975 57788999999999999999987763
No 56
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.3e-45 Score=349.21 Aligned_cols=214 Identities=26% Similarity=0.460 Sum_probs=186.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
+.+++|.|+|. ..=-.++++|++||++||+||||||||||||+|+|.. . +.+|+|++||++.+. ..
T Consensus 2 l~L~~V~~~y~----------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~-P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYG----------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-T-PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeC----------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-C-CCCceEEEcCeecCcCCcc
Confidence 56788888882 1224678899999999999999999999999999954 3 468999999999863 45
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
.|-++++||+.+||.++||.+|+.++..-.+ ++ .++.+++++.++.++||..+.+.. +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 7789999999999999999999999853221 12 355677899999999999888764 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+++-+||+||||+|+|||.-+.++..++.+++++ +.|++++||+|+ ++.+.+|+++++++|||.+.|+.++.+
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999999864 889999999987 578999999999999999999988865
No 57
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.1e-46 Score=431.73 Aligned_cols=353 Identities=21% Similarity=0.269 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++..++..+...|...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888899999999999999999998888887665444333221111111101111111122334456788
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004539 90 ALSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
.++..|.++.|.+..+..+.. |...+... .. +..++.+.+...+.........+.....++++|++|+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~-a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSA-AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEE
Confidence 888889999998888775543 22111110 00 0011111111111000000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ ..++++|+|+|+++++|+.++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++.++||
T Consensus 323 y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 323 YP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-D-VSEGDIRFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred CC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCCEEEECCEEHhhCCHHHHHhheEEE
Confidence 83 23457999999999999999999999999999999999853 3 468999999998753 567889999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHH
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+|++.+|+. |++|||.++. + ..++++ ++++++.. .+++..||.+|+. ...||||||||++||
T Consensus 395 ~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lA 463 (569)
T PRK10789 395 SQTPFLFSD-TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIA 463 (569)
T ss_pred ccCCeeccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHH
Confidence 999999975 9999998762 1 123322 22233332 3467788888764 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|++|||||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.||+|++|++|++++.|+++++++
T Consensus 464 Rall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 464 RALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999985 58999999999853 57799999999999999999999864
No 58
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.8e-44 Score=385.01 Aligned_cols=218 Identities=28% Similarity=0.421 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI--SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECcccHH
Confidence 58999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+++++|++|++.+++.+||+||+.+..... ..+..+..++++++++.++|++..++.+ ++||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHH
Confidence 34678999999999999999999998754432 1233444566788999999988777654 589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999999998764
No 59
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-44 Score=392.97 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|++++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--QPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCC
Confidence 369999999998 3457999999999999999999999999999999999954 3568999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.||||+|++.+||++||.||+.|+...+ ..++.+.++++.++++.++|.+..+. .+++|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986533 23456667789999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 899999999975 578999999999999999999999875
Q ss_pred H
Q 004539 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
No 60
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-44 Score=390.47 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=190.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|... ..++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 i~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~--~p~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 2 IELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE--RPTSGRVLVDGQDLTALSEK 75 (343)
T ss_pred EEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCcCCHH
Confidence 7899999998310 12457999999999999999999999999999999999964 3568999999998752
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..+++|+||+|++.+++.+||+||+.+..... ..+..+..+++.++++.+||++..++. +++|||||||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~q 147 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 23578999999999999999999999876432 234445567789999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 899999999975 577889999999999999999998
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~~~ 229 (343)
T PRK11153 227 EVF 229 (343)
T ss_pred HHH
Confidence 875
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5e-44 Score=371.00 Aligned_cols=219 Identities=30% Similarity=0.484 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL--RPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEECCCCCHH
Confidence 4689999998 2356999999999999999999999999999999999964 3468999999998753
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC-------CcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
. .++.++|++|++.+++.+||+||+.+......... .......++++++++.+||++..++. ++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01334456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999976 57788999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988764
No 62
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-45 Score=432.00 Aligned_cols=350 Identities=18% Similarity=0.240 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccce-eeeccccccceecchhchh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (746)
..+..+++..+..+...|...+.+++|+++.+....+++.+...+......+.....+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777788888899999999999987777777665543333211100000000 0000001111111111222
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004539 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+. ...|.++.|.+..+..+.. |..++..... .+..++.+.++..+.. ......+.....++++||+|+
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~-~~~~~~~~~~~~i~~~~v~f~ 349 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ-YGNDDRPLQSGRIDIDNVSFA 349 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CCCCccCCCCCeEEEEEEEEE
Confidence 32 4567778887777764432 2222211000 0001111111110000 000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ .++++|+|+|+++++||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||.++++ .++++|+||
T Consensus 350 y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 350 YR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred eC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 93 235699999999999999999999999999999999985 44 458999999999853 578999999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHH
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+||+.+|+. |++|||.++. ..++ ++++++++.+| |++..||.+|+. ...||||||||++||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqrQRialA 488 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQKQLLALA 488 (592)
T ss_pred ccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999986 9999999863 1222 23444555444 456788988864 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ....||+|++|++|++++.|+++|+++
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 799999999985 467799999999999999999999874
No 63
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-44 Score=366.14 Aligned_cols=210 Identities=31% Similarity=0.540 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE--RPDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcCcCchh
Confidence 4689999998 2357999999999999999999999999999999999964 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.++.... ........++++++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875422 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 567889999999999998765
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.6e-44 Score=367.28 Aligned_cols=208 Identities=27% Similarity=0.477 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 2 IRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE--KPTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred eEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEehhhcChh
Confidence 78999999982 12246999999999999999999999999999999999954 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.++.... ....++.++++.++++.+||++..++. +.+|||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 145 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQ 145 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999999899999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999877999999999975 56678999999999974
No 65
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-44 Score=370.38 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE--RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCc
Confidence 48899999998 2357999999999999999999999999999999999954 3468999999998743 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333456688899999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 467889999999999999999988763
No 66
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-45 Score=430.55 Aligned_cols=354 Identities=21% Similarity=0.289 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004539 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.+..+++..+..+...+...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777778899999999999999998888888766654433222111111111111111122223444567888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEe
Q 004539 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (746)
++..|.++.|.+..+..+.. |...+..... ....++.+.+...+...............++++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 88889999998877775432 2222211100 0011111111111110000000011123599999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEec
Q 004539 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (746)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q 236 (746)
..++++|+|+|+++++||.++|+|+||||||||+|+|+|.. + +.+|+|.+||+++++ .++++++||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 22457999999999999999999999999999999999954 3 458999999998752 56788999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
++.+|+. |++|||.++. +++.++ ++++++++.+| |++..||.+|+. .+.||||||||++|||+
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 9999999763 112232 23344444443 456788999865 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++++|+|++||||||+||+.++..+++.|+++.+ ++|+|++||++. ..+.||+|++|++|+++..|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999999854 799999999975 568899999999999999999999863
No 67
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=378.94 Aligned_cols=237 Identities=30% Similarity=0.438 Sum_probs=196.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ....+.+|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 2 IKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL--QPTEGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred EEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC--CCCCcEEEECCEECcccccc
Confidence 7899999999311 011246999999999999999999999999999999999964 3468999999998741
Q ss_pred ----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCH
Q 004539 226 ----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++.++||+|++ .+++ .||.||+.|+.... ..++++.++++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSg 147 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSG 147 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCH
Confidence 3467899999986 5675 69999999876432 234556677889999999996 34443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999877999999999975 567889999999999999999
Q ss_pred CHHHHHH---HHHhcCCCCCCCCChH
Q 004539 379 KASEAMA---YFSSIGCSPQIAMNPA 401 (746)
Q Consensus 379 ~~~~~~~---~f~~~G~~~~~~~npa 401 (746)
+++++.. .+...|+.+|.....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 227 TPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred CHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 9998743 3456677766543333
No 68
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=391.73 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||||+|+|.. ++.+|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~--~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--DITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 48999999998 3457999999999999999999999999999999999954 3468999999998753 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.|+||+|++.+|+++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986533 234455567889999999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5778999999999999999999988753
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9e-44 Score=368.11 Aligned_cols=216 Identities=27% Similarity=0.509 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV--KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccCCHh
Confidence 4789999998 3457999999999999999999999999999999999964 3568999999998642
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
. .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++. ++.||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 24579999999999999999999998653321 23344556788999999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999988763
No 70
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=365.12 Aligned_cols=216 Identities=30% Similarity=0.474 Sum_probs=183.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++|... ...+++|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~-~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE--RPTSGEVLVDGEPVT-GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECc-cccC
Confidence 4689999998210 01157999999999999999999999999999999999964 246899999999875 3467
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++||+|++.+++.+||+||+.+....+ ........++++++++.+||.+..++. ++.||||||||++|||+
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999999899999999875432 123344456788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (746)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-44 Score=368.34 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++|..+ .+.+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE--RPTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcccCCHH
Confidence 7899999998210 01137999999999999999999999999999999999964 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.++|++..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23577999999999999899999999875432 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999775 899999999975 577889999999999999999988
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
No 72
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-44 Score=363.41 Aligned_cols=210 Identities=30% Similarity=0.565 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII--LPDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCCchhHHHHc
Confidence 4789999988 2456999999999999999999999999999999999954 35689999999987655677
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+|+++..++. +++||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999899999999875433 123344556788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466889999999999998765
No 73
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.3e-45 Score=427.98 Aligned_cols=355 Identities=22% Similarity=0.301 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..+..+++..+.++...+.....+++|.++.+..+.+++.+...+..+...+.....+.....+..+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888999999999999999998887777776555443332111111111111111222222344455788
Q ss_pred hhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCC-C-CCCCCCCCCCceEEEEeEEE
Q 004539 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRE-R-PKFQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~nvs~ 157 (746)
.++..|.++.|....+..+. .|...+..... ....++.+.++..+.. . +.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 88888888888887665432 22222211000 0000000001100000 0 00000111123699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004539 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|+ +++++|+|+|++++|||.++|+|+||||||||+|+|+|.. + +.+|+|.+||+++.+ .++++|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-D-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 993 2246999999999999999999999999999999999854 3 458999999998863 56889999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
|+|++.+|+ .|++|||.++. + +.++++..+ ..++.++. +++..||.+|+. .+.||||||||++|||
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCccccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 999999997 49999999862 1 123222221 12233333 466788888764 4569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+++|+|++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998754 899999999975 468899999999999999999999864
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.7e-44 Score=368.02 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh-
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999988 345799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+||.+..+.... +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2457899999999888 7899999998754321 11222345678899999999876554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.+.||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999975 56788999999999999999987
Q ss_pred HH
Q 004539 381 SE 382 (746)
Q Consensus 381 ~~ 382 (746)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 75
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-43 Score=364.59 Aligned_cols=216 Identities=29% Similarity=0.492 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++||+++|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL--RPTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccchHH
Confidence 47899999982 11257999999999999999999999999999999999954 3468999999998742 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
++++++||+|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 56779999999999988999999998754321 23334456788999999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 699999999976 46678999999999999999998764
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=376.59 Aligned_cols=232 Identities=27% Similarity=0.466 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL--KPTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEECCEECCCcCc
Confidence 38899999998311 011257999999999999999999999999999999999964 3468999999998742
Q ss_pred ---hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC--ccccccccCccccCCCH
Q 004539 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSG 298 (746)
..+++||||+|++ .++ ..||+||+.++.... ..++++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 245566667889999999996 44454 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 46688999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCC
Q 004539 378 GKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 378 G~~~~~~~---~f~~~G~~~~ 395 (746)
|+++++.+ .+...|+.+|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99988753 2334455443
No 77
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.8e-43 Score=380.13 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. ++++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~--~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccChH
Confidence 48899999998 3467999999999999999999999999999999999954 3568999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++.+ +.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHH
Confidence 356789999999999999999999998765431 234445567889999999998777654 689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++.+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999975 5788999999999999999999999765
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=369.13 Aligned_cols=220 Identities=29% Similarity=0.486 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV--EPTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEeccccCHh
Confidence 46899999882 1257999999999999999999999999999999999954 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC-----CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++.+++.+||+||+.++..... ..........+++.++++.++|.+..++. +.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCC
Confidence 245679999999999998999999987642110 00011223456788899999998665543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4777999999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988753
No 79
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.6e-43 Score=361.58 Aligned_cols=210 Identities=27% Similarity=0.508 Sum_probs=181.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE--EPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCcc
Confidence 4789999988 2357999999999999999999999999999999999964 3468999999998743 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+|+.+..+.. ++.||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 567889999999999999876
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.4e-43 Score=369.11 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE--QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEcccccc
Confidence 48999999998 2356999999999999999999999999999999999964 3468999999988641
Q ss_pred ---------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..++.++||+|++.+++.+||+||+.++..... ....+...+++.++++.+||.+..++. ++.|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhC
Confidence 235679999999999988999999988643111 123344556788999999998766543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
No 81
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=376.33 Aligned_cols=232 Identities=27% Similarity=0.453 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|... ....+++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL--QPTSGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 37899999999311 011256999999999999999999999999999999999964 3468999999998731
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.|+||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 3456799999986 4664 69999999875432 234555566789999999996 44554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.||+|++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5778899999999999999
Q ss_pred ecCHHHHHH---HHHhcCCCCC
Q 004539 377 FGKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 377 ~G~~~~~~~---~f~~~G~~~~ 395 (746)
.|+++++.+ .+...+..+|
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCC
Confidence 999988642 2334455444
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.1e-43 Score=361.91 Aligned_cols=214 Identities=30% Similarity=0.520 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++||+++|..+ ....++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL--EPDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEEcccCHHH
Confidence 7899999998311 01126999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. ++.||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 4678999999999999899999998865432 133445567788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 577889999999999998765
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3e-43 Score=366.30 Aligned_cols=217 Identities=29% Similarity=0.507 Sum_probs=187.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCChh
Confidence 7899999998 2457999999999999999999999999999999999954 3568999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.++.... ......+..+++.++++.+||++..+.. ++.||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 34567999999999998899999998864211 1123444556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 46778999999999999999998876
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
No 84
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-43 Score=381.23 Aligned_cols=207 Identities=29% Similarity=0.455 Sum_probs=183.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEecCCcCCCCCC
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lT 245 (746)
++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. ..++++||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 468999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 2334455667899999999988777654 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004539 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++.+-
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999987654
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-43 Score=367.38 Aligned_cols=216 Identities=30% Similarity=0.549 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
++++||+++| ++ +.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRY--------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI--EPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEe--------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCeEcCcCCh
Confidence 4689999998 22 56999999999999999999999999999999999964 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc--cccccccCccccCCCHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+||+||+.+..... ....+...+++.++++.+||.+ ..++ .++.|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34568999999999999899999999875432 1234445567889999999985 4443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 86
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.7e-43 Score=363.46 Aligned_cols=214 Identities=29% Similarity=0.515 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL--PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcCCCCHH
Confidence 4789999988 2357999999999999999999999999999999999964 3468999999988742
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHHH
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++++..++. ++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122344567778877 466655543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 57788999999999999999998775
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
No 87
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-43 Score=390.85 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.+
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++++|||+|++.+++.+||+||+.++....... ........++++++++.+|+.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988899999999864211000 001234556789999999998877754 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999999885
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.8e-43 Score=368.48 Aligned_cols=219 Identities=29% Similarity=0.450 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV--EPSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCccEEEECCEEhhhCCHH
Confidence 78999999882 1457999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC--C---CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++.+||+||+.++..... . ......+..+++.++++.+||.+..+.. +..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCC
Confidence 246779999999999998999999987532100 0 0011233456788999999998766643 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4678899999999999999
Q ss_pred ecCHHHH
Q 004539 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998774
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.1e-43 Score=371.63 Aligned_cols=218 Identities=24% Similarity=0.448 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccCh
Confidence 59999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++|++|++.+++.+||.||+.+...... ........+++.+.++.+||.+..+.. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 135679999999999998999999998643211 123444456788899999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57788999999999999999998
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-43 Score=377.57 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||++.|..+ ...++++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~--~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI--KSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCEEccccc
Confidence 369999999999311 011346999999999999999999999999999999999954 3468999999987632
Q ss_pred ------------------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccc
Q 004539 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (746)
Q Consensus 226 ------------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (746)
.++++++||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 59999999875321 234555566788999999996 344
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004539 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
++ .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||++. .+.+.||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45689999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEeCCeEEEecCHHHHHH---HHHhcCCCCC
Q 004539 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~---~f~~~G~~~~ 395 (746)
+|++|++|++++.|+++++.. .++..|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999988643 2334455444
No 91
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-43 Score=370.57 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|. .++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY--LPQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCceEEEECCEECCCCCH
Confidence 589999999982 1346999999999999999999999999999999999954 3468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++||+|++. .++..||.||+.|+.... ..++.+.++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34577999999973 334579999999875421 234445556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999975 46688999999999999999998654
No 92
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=394.48 Aligned_cols=348 Identities=24% Similarity=0.317 Sum_probs=243.6
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhc----hhhhhh
Q 004539 17 QLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALS 92 (746)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 92 (746)
+--|+-+.+-.|.-+-|||+-|+++.-|...|...+.+-...+.|....-+ --+-.|..+-..++. .++..+
T Consensus 393 ~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLn----fLN~~Qn~Ii~lgll~gsll~aY~V 468 (790)
T KOG0056|consen 393 SWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLN----FLNIVQNGIIGLGLLAGSLLCAYRV 468 (790)
T ss_pred hhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHhhhhheeeeee
Confidence 334555566677778899999999998888887665433222221000000 012223322222222 344455
Q ss_pred hhcccccchhhhhccccc----Chhhh----ccCCCCCCCCCccc---ccccCCC--CCCCCCCCCCCceEEEEeEEEEE
Q 004539 93 RASSASLGLSFSFTGFTM----PPDEI----ADSKPFSDDDIPED---IEAGTRE--RPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
..+....|....|..|.+ |..-. +.... ..-|.++- ++..+.. .|.-.+.......++|+||+|.|
T Consensus 469 t~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~-nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y 547 (790)
T KOG0056|consen 469 TEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQK-NFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY 547 (790)
T ss_pred eeccccccceehHHHHHHHHhCchHHHHHHHHHHHH-hhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec
Confidence 566777887777765443 32100 00000 00111110 1111000 01111111223469999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEe
Q 004539 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~ 235 (746)
. .++++|+||||++.||+.+||+||||+||||++++|- |+.+. .+|.|.+||+|++. .+|+.||.||
T Consensus 548 ~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 548 D-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred C-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 3 5689999999999999999999999999999999999 66654 48999999999863 6899999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004539 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
||..||.+ |+..||+|+......+++..+.+.+.+++ +.++.++.++|+||++..+ |||||||||+|||+++++|.
T Consensus 619 QDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 619 QDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred Ccceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCc
Confidence 99999975 99999999732211111111222222333 2357799999999987765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|++|||.||+||..+++.|...|.++++ ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999986 8999999999986 35699999999999999999999985
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.8e-43 Score=358.63 Aligned_cols=206 Identities=32% Similarity=0.536 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI--KPDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCCcccchHHH
Confidence 4789999998 2457999999999999999999999999999999999964 3568999999988742 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+||+||+.+...... . .+++++++++.++|.+..++. ++.|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 5679999999999989999999988754221 1 234678889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999975 466789999999999998765
No 94
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-43 Score=371.50 Aligned_cols=229 Identities=24% Similarity=0.435 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 122469999999999999999999999999999999999643 468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..+++++||+|++. +++..||+||+.|+.... ..++++..++++++++.+||++..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 566789999999875432 244556667789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||++++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999753 5 5799999999999999999988
Q ss_pred HHHH---HHhcCCCC
Q 004539 383 AMAY---FSSIGCSP 394 (746)
Q Consensus 383 ~~~~---f~~~G~~~ 394 (746)
+.+. ++..|+++
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (279)
T PRK13650 227 LFSRGNDLLQLGLDI 241 (279)
T ss_pred HHcChHHHHHcCCCC
Confidence 6532 33445443
No 95
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.2e-43 Score=360.58 Aligned_cols=209 Identities=32% Similarity=0.541 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|... ...+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD--RPTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc--CCCceeEEECCEehhhcchh
Confidence 4789999998210 01157999999999999999999999999999999999954 3468999999998742
Q ss_pred ---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. .++.++|++|++.+++.+||+||+.++...+. ......+++++++++.+||++..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 24679999999999998999999998764331 22334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. + ..||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999764 5 48999999999974
No 96
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=351.68 Aligned_cols=220 Identities=26% Similarity=0.492 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|..+|+.++| ++++++++||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58889999988 56789999999999999999999999999999999999653 568999999999874
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..|..|||+||++..|..|||+|||......+.. +..+++.+.+++++|++++|.|.++..- ..||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHH
Confidence 2345699999999999999999999988766532 2334566677899999999999998653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|+++|..|+++-|+.. +....|||.+++.+|++..+|+++|+
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 57799999999999999999999998
Q ss_pred HH
Q 004539 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 227 ~~ 228 (243)
T COG1137 227 VN 228 (243)
T ss_pred hc
Confidence 63
No 97
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.4e-44 Score=421.90 Aligned_cols=354 Identities=21% Similarity=0.266 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004539 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.+..++..++..+...|..++.+|+|+++.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667788889999999999999999988888777766554333221100000000000011111112333457888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCC-CC-CCCCCCCCCceEEEEeEEEE
Q 004539 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRE-RP-KFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~nvs~~ 158 (746)
++..+.++.|.+..+..+.. |...+..... ....++.+.++..+.. .+ .....+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 88888888888777764332 2222211100 0000011101100000 00 00001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004539 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ +++++|+|+|+++++||.++|+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-D-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-C-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 82 2246899999999999999999999999999999999853 3 468999999998753 567889999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH-----HHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+|++.+|+ .|++||+.++. + ..++++..+. .++.+. .+++..||.+|+. ...||||||||++|||+
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 1233322222 222232 2456677877754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999885 48999999999853 46799999999999999999999864
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.7e-43 Score=364.11 Aligned_cols=215 Identities=26% Similarity=0.460 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC-----ccEEEECCEeCC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPYS 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~-----~G~I~~~G~~~~ 224 (746)
++++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 2 IEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEcc
Confidence 7899999998 23469999999999999999999999999999999999653 33 899999999874
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC----ccccccccCcccc
Q 004539 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~ 294 (746)
. ..++.++|++|++.+++ +||+||+.+....+. ..+..+..++++++++.+||. +..++ .++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~ 143 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SAL 143 (247)
T ss_pred ccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Ccc
Confidence 2 24578999999999998 899999998754321 123344556788999999997 44443 456
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGEL 221 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999977 589999999975 47788999999999999
Q ss_pred EEecCHHHHH
Q 004539 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 222 ~~~~~~~~~~ 231 (247)
T TIGR00972 222 VEYGPTEQIF 231 (247)
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 99
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.2e-43 Score=359.52 Aligned_cols=221 Identities=44% Similarity=0.742 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeCCh-h
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-~ 226 (746)
.++|+||+++|... +..+++|+|+|+++++||+++|+||||||||||+|+|+|.... .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998321 1146899999999999999999999999999999999996531 1468999999998753 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH-HHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++|++|++.+++.+||+||+.++.....+.....+...+++++ .++.+++.+..++. ++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHH
Confidence 56789999999999999999999998765432222222333344555 88888887665543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999755688999999999999999876
No 100
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-43 Score=363.77 Aligned_cols=218 Identities=28% Similarity=0.550 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV--PRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 58999999998 2357999999999999999999999999999999999964 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.+..... .....++.+.+++++++.+|+.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 23567999999999998899999998864322 112334455678899999999765554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
No 101
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.2e-45 Score=420.64 Aligned_cols=325 Identities=22% Similarity=0.280 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004539 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888889999999999999999999999988877665554433211111111011111111112333457888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCCC----CCCCCCCCCCCceEEEEeE
Q 004539 91 LSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTRE----RPKFQTEPTLPIYLKFTDV 155 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~nv 155 (746)
++..|.++.|.+.++..+.. |...+... .. +..++.+.++..+.. .+.....+.....++|+||
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA-AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDL 340 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEE
Confidence 88888888888777765432 21111110 00 001111111111100 0000001112236999999
Q ss_pred EEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEE
Q 004539 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIG 232 (746)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~ 232 (746)
+|+|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .+|++|+
T Consensus 341 sf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 341 SFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhheE
Confidence 99993 224699999999999999999999999999999999984 44 458999999998763 5678999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++. + +.++++..+ .+++.++. |++..||.+|+.. ..||||||||++||
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~~--lp~GldT~ige~G-~~LSGGQrQRiaiA 482 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLRS--LPDGLDTVLGEGG-ARLSGGERQRLALA 482 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHHh--Ccccccchhcccc-CcCCHHHHHHHHHH
Confidence 99999999975 9999999863 1 123322221 12233333 4678899998754 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
|||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999874 489999999985
No 102
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.5e-42 Score=360.24 Aligned_cols=216 Identities=31% Similarity=0.542 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY--VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcccCChh
Confidence 7899999998 2457999999999999999999999999999999999964 3568999999988742 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+|++||+.+....+ ........+++.++++.+||++..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999998888899999998865432 123344456788999999998766654 45899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. +. .||++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999975 58999999999864 44 599999999999999999887754
No 103
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=365.19 Aligned_cols=218 Identities=29% Similarity=0.490 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccccc
Confidence 48999999998 2457999999999999999999999999999999999964 3468999999987631
Q ss_pred --------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-cccccC
Q 004539 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (746)
Q Consensus 226 --------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~ 290 (746)
..++.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 335789999999999998999999987542111 123445567788999999997653 43
Q ss_pred ccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35689999999999999999999999999999999999999999999999877999999999975 4667899999999
Q ss_pred CCeEEEecCHHHHH
Q 004539 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
No 104
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.1e-42 Score=362.32 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC---C-CCcHHHHHHHHHHHHHHcCCCc-cccccccCcccc-CCCH
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~LSG 298 (746)
. .+..++||+|++.+++.+|++||+.+....... . ..+..+..+++.++++.+||++ ..++. +. +|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999886532110 0 1123334567889999999973 44443 33 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 46666 799999999999999
Q ss_pred cCHHHH
Q 004539 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.2e-43 Score=381.48 Aligned_cols=207 Identities=26% Similarity=0.462 Sum_probs=183.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc----cCcEEEEecCCc
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yv~Q~~~ 239 (746)
+++.+|+|+||+|++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++.. .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~--~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI--EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC--CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3567999999999999999999999999999999999854 3568999999999853 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEE
Q 004539 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (746)
Q Consensus 240 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illL 319 (746)
+||++||+||+.|+.... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456667789999999999876665 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.||+|++|++|++++.|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999975 5778999999999999999999998753
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8e-43 Score=356.65 Aligned_cols=206 Identities=33% Similarity=0.517 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL--TPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcccCCHH
Confidence 78999999882 2357999999999999999999999999999999999964 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.+..... .......+++++++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24568999999999998899999999875432 123344556788999999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999777999999999975 5777899999999985
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=362.78 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 48999999998 2356999999999999999999999999999999999965321 358999999998742
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+++.|+|++|++.+++.+||+||+.++...... .....+..+.+.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3467899999999888889999999987542211 112344456788999999986422111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. ++.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 467889999999999999999998
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
No 108
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=359.22 Aligned_cols=216 Identities=30% Similarity=0.504 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCCH
Confidence 58999999998310 01257999999999999999999999999999999999964 3468999999998742
Q ss_pred ----hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||++..++. ++.|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999875432 123344556788999999998766653 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999754 4 4468999999999998886
Q ss_pred H
Q 004539 380 A 380 (746)
Q Consensus 380 ~ 380 (746)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
No 109
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=370.78 Aligned_cols=222 Identities=23% Similarity=0.432 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|..+ ....+++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL--KPTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 48999999999311 011246999999999999999999999999999999999954 3468999999998742
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.||||+|++ .+++ .||.||+.++.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 4666 59999999875432 234555667789999999996 55554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999975 4678899999999999999
Q ss_pred ecCHHHHHH
Q 004539 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988653
No 110
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.5e-42 Score=376.93 Aligned_cols=227 Identities=24% Similarity=0.423 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeeccc-----cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 004539 149 YLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 223 (746)
.|+++||+++|..++. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 6999999999843110 00123579999999999999999999999999999999999653 4689999999987
Q ss_pred Ch-------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 004539 224 SK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV 293 (746)
Q Consensus 224 ~~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 293 (746)
.. .++++|+||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..+ .++
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RYP 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CCc
Confidence 42 2457899999997 588899999999987543211 245566677888999999995 3334 456
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G 238 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLG 238 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999999765 899999999975 467789999999999
Q ss_pred eEEEecCHHHHH
Q 004539 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
++++.|+++++.
T Consensus 239 ~ive~g~~~~i~ 250 (331)
T PRK15079 239 HAVELGTYDEVY 250 (331)
T ss_pred EEEEEcCHHHHH
Confidence 999999998875
No 111
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-43 Score=361.72 Aligned_cols=215 Identities=24% Similarity=0.433 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCH
Confidence 58999999998 2457999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+||+||+.++.... ......+.++++++.+ ++.+..++ .++.|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566777777 46654443 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999999988
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
No 112
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=371.84 Aligned_cols=221 Identities=25% Similarity=0.453 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|..+. .....+|+|+|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL--LPDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEEeceecccccc
Confidence 389999999993210 11246999999999999999999999999999999999964 346899999987541
Q ss_pred ------------------------hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc
Q 004539 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (746)
Q Consensus 225 ------------------------~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (746)
..+++.||||+|++ .++ ..||+|||.|+.... ..++++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677889999999
Q ss_pred CCC-ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 279 gL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
||+ +..++ .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999965
Q ss_pred HHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
.+.+.||+|++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 477899999999999999999998874
No 113
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=355.28 Aligned_cols=221 Identities=27% Similarity=0.487 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++.+||+++| +.-.+++|||+++++||+++|+||||||||||+|+|+|.+ . +++|+|.++|++++.
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~-P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-K-PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-c-CCCceEEECCcccCCCCH
Confidence 58899999988 6778999999999999999999999999999999999964 3 568999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC--------CCC-CcHHHHHHHHHHHHHHcCCCccccccccCcccc
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
..+..|+--||...+|++|||.||+..++..+. +.. -..++..+++.++|+.+||.+.+|+..|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~----- 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG----- 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----
Confidence 235678999999999999999999999865331 111 1245667789999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||+. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999874 699999999976 5899999999999999
Q ss_pred EEEecCHHHHHH
Q 004539 374 LLYFGKASEAMA 385 (746)
Q Consensus 374 iv~~G~~~~~~~ 385 (746)
++..|+|+|+.+
T Consensus 228 ~IAeG~P~eV~~ 239 (250)
T COG0411 228 VIAEGTPEEVRN 239 (250)
T ss_pred CcccCCHHHHhc
Confidence 999999999753
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-42 Score=363.72 Aligned_cols=217 Identities=32% Similarity=0.514 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccccc
Confidence 4789999998 2357999999999999999999999999999999999964 3468999999987631
Q ss_pred -------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004539 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
..++.++|++|++.+++.+||.||+.++.... .........+.+.++++.+|+.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM----- 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----
Confidence 24678999999999999899999999864211 1123444556788999999998766643
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 115
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=360.79 Aligned_cols=216 Identities=29% Similarity=0.481 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE--MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecccccc
Confidence 48899999998 2357999999999999999999999999999999999954 356899999999762
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+||++..++. ++.||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 124568999999999999999999997532 211 123344456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999999999999
Q ss_pred cCHHHH
Q 004539 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|++++.
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-42 Score=355.73 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE--LPTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcccCCHH
Confidence 46899999882 1257999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+....+ ....++..+++.++++.+||++..++. +++|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24567999999999999999999999875432 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
No 117
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=368.76 Aligned_cols=218 Identities=29% Similarity=0.527 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|. .++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~--~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL--KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCEECCCCcc
Confidence 699999999982 2356999999999999999999999999999999999954 356899999999873
Q ss_pred --hhccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..+++.++|++|++. ++ ..||+||+.++.... ..+..+..++++++++.+||.+..++. ++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 135678999999973 44 479999999865422 234455566789999999998766654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999975 4667899999999999999999
Q ss_pred HHHHHH
Q 004539 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
No 118
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3e-44 Score=419.03 Aligned_cols=355 Identities=23% Similarity=0.326 Sum_probs=247.4
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004539 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+.++..++...+..+...+.....+++|+++.+....+++.+..........+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888999999999999999999988888888766544333221110000000001111111223334567
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCC-C-CCCCCC-CCCCCceEEEEe
Q 004539 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTR-E-RPKFQT-EPTLPIYLKFTD 154 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~l~~~n 154 (746)
+.++..++++.|....+..+.. |...+... .+ +..++.+.+...+. . ...... .......++++|
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAG-AAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQ 342 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEE
Confidence 7777778888887766653332 22211110 00 00111111110000 0 000000 001123599999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCc
Q 004539 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~ 230 (746)
|+|+|+. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|.. + +.+|+|.+||.++++ .++++
T Consensus 343 v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 343 VNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-D-PQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred EEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCEEEECCEEHHhcCHHHHHHh
Confidence 9999831 12367999999999999999999999999999999999954 3 458999999998753 46788
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCCCHHHHHH
Q 004539 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqR 303 (746)
++|+||++.+|+ .|++|||.++. ++ .++ +++.+.++..++ ++..||.+|+. ...||||||||
T Consensus 416 i~~~~Q~~~lf~-~Ti~~Ni~~~~----~~-~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~Qr 484 (576)
T TIGR02204 416 MALVPQDPVLFA-ASVMENIRYGR----PD-ATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQRQR 484 (576)
T ss_pred ceEEccCCcccc-ccHHHHHhcCC----CC-CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHHHH
Confidence 999999999997 49999998852 11 222 234444444443 45667888754 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|+|++|++|++++.|+++++
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHH
Confidence 999999999999999999999999999999999999985 4899999999975 4578999999999999999999987
Q ss_pred HH
Q 004539 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 562 ~~ 563 (576)
T TIGR02204 562 IA 563 (576)
T ss_pred HH
Confidence 54
No 119
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-43 Score=355.79 Aligned_cols=208 Identities=30% Similarity=0.590 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++++|+|+||++++| +++|+||||||||||+++|+|.+ ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT--PPSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCCccccchHH
Confidence 4789999998 2347999999999999 99999999999999999999954 3468999999987642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+|+.+||+||+.+..... ...+++..++++++++.+||++..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999899999999865432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 699999999975 466789999999999998765
No 120
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=362.40 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|..... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 69999999998 2356999999999999999999999999999999999965321 248999999988631
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC----ccccccccCccccC
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 295 (746)
..++.++|++|++.+++ +||+||+.++..... .......++++.+.++.+++. +..++ .++.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 150 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALS 150 (254)
T ss_pred ccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Cccc
Confidence 34678999999998885 899999998754321 112334456788889988874 33343 4578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|++|+++
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIE 228 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 799999999976 467889999999999999
Q ss_pred EecCHHHHH
Q 004539 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
..|+++++.
T Consensus 229 ~~g~~~~~~ 237 (254)
T PRK14273 229 EESSTDELF 237 (254)
T ss_pred EeCCHHHHH
Confidence 999998874
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=365.74 Aligned_cols=216 Identities=22% Similarity=0.433 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----- 224 (746)
|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 2 LATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL--RPQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred eEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCccEEEECCEEcccccCC
Confidence 7899999998 2457999999999999999999999999999999999954 356899999999873
Q ss_pred -hhccCcEEEEecCCcC-CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 225 -KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
...++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKK 143 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHH
Confidence 1245679999999752 33468999998865332 123444456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999999887
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 223 ~~ 224 (271)
T PRK13638 223 VF 224 (271)
T ss_pred Hh
Confidence 64
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=369.07 Aligned_cols=221 Identities=27% Similarity=0.437 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|..+ ....+.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL--KPSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 47899999998310 001257999999999999999999999999999999999954 3568999999998732
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..++. ++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCC
Confidence 2456799999997 455 479999999875432 234455566789999999996 455543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 57789999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9988764
No 123
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=391.10 Aligned_cols=216 Identities=32% Similarity=0.534 Sum_probs=184.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (746)
+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|... +.+|+|.+||++..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC------CccccccccCccccCC
Q 004539 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~L 296 (746)
..++++++||+|+|.+|+. |++|||.++.. +.+++ .+.+++++.|| ++..|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3588999999999999985 99999998732 12333 34444444443 45778888854 5679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++|||+.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 6999999999753 57799999999999999
Q ss_pred ecCHHHHHH
Q 004539 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
No 124
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=362.85 Aligned_cols=221 Identities=23% Similarity=0.405 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 12 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 12 QIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred eEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 69999999988 245699999999999999999999999999999999996531 1368999999988632
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +||+||+.+..... ..+.+...++++++++.+++.+...... +..+..||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 158 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGG 158 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHH
Confidence 24567999999999888 89999999875432 1233444566888999998843211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 899999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14268 237 TRQIF 241 (258)
T ss_pred HHHHh
Confidence 98763
No 125
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=361.87 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeC
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~ 223 (746)
|..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+|+|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 23569999999999999999999999999999999999542 12 3589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ..++.++|++|++.+++ .||+||+.++...+. ....+..++++++.++.+++.+...... +..++.||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34578999999999888 599999998754321 1123344567888999999854322211 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
No 126
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=366.65 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|. ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 589999999982 123569999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.|+|++|++. +++..||.||+.++.... ..+.++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566689999999875432 234455567789999999998777654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 8999999999764 54 599999999999999999988
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
No 127
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=347.99 Aligned_cols=217 Identities=27% Similarity=0.463 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+..| +..++|++||+++++||+++|+||||+|||||||+|+|.. ++.+|+|.++|+|++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~--~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV--RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeeEEECCeecCCCCH
Confidence 58999999988 5578999999999999999999999999999999999954 3458999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-CCccccccccCccccCCCHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerq 302 (746)
..|..|+||||...+||.|||+|||..++..+.. ++..+...+++.+.|- |.+.++++- ..|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHH
Confidence 3467899999999999999999999998654321 1112222666777763 455555543 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++.. ...+.+||.++|.+|++++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988855 577899999999999999999999
Q ss_pred HHHH
Q 004539 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++.+
T Consensus 223 eL~~ 226 (237)
T COG0410 223 ELLA 226 (237)
T ss_pred HHhc
Confidence 9763
No 128
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.3e-42 Score=373.36 Aligned_cols=227 Identities=25% Similarity=0.436 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|... +. .+|+|.++|+++..
T Consensus 12 ~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 12 LLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNL 86 (330)
T ss_pred eEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcC
Confidence 69999999998421 133579999999999999999999999999999999999653 32 38999999998742
Q ss_pred ---h---cc-CcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ---S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---~---~~-~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. +| +.|+||+|++ .++|.+|+.+++........ ..++.+..+++.++++.+||++..+. + +.++++|
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~L 162 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEF 162 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccC
Confidence 1 22 4799999998 68899999999987654321 23455666788999999999764322 2 3567899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 899999999976 466789999999999999
Q ss_pred EecCHHHHHH
Q 004539 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+++++..
T Consensus 242 e~g~~~~i~~ 251 (330)
T PRK09473 242 EYGNARDVFY 251 (330)
T ss_pred EECCHHHHHh
Confidence 9999998753
No 129
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=367.67 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=184.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
.++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~--~p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI--EPTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEccccChhh
Confidence 456777766 4567999999999999999999999999999999999954 3468999999998742 1
Q ss_pred ----ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 227 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+..++. ++.|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998899999999875432 123344556788999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 477889999999999999999988
Q ss_pred HHH
Q 004539 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 764
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=360.54 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (746)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2356999999999999999999999999999999999965321 24899999999874
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..+++.++|++|++.+++.+||.||+.++...+.. ....+...++++++++.+++.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 13457899999999999989999999987542210 012334455678899999885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 799999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 88864
No 131
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-42 Score=372.85 Aligned_cols=227 Identities=26% Similarity=0.380 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12246999999999999999999999999999999999965321 358999999998742
Q ss_pred ---hc----cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ---SL----KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---~~----~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
.+ ++.|+||+|++ .+.|.+||.+++........ ...+++.++++.++++.+||.+..+ ..+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 11 24699999998 47889999998876543221 2345566778999999999975221 113457899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++|||+. .+.+.||+|++|++|+++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 4899999999976 466889999999999999
Q ss_pred EecCHHHHH
Q 004539 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999998875
No 132
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=361.81 Aligned_cols=212 Identities=31% Similarity=0.492 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ...
T Consensus 2 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~-~~~ 70 (255)
T PRK11248 2 LQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV--PYQHGSITLDGKPVEG-PGA 70 (255)
T ss_pred EEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCC-CCC
Confidence 7899999998 2357999999999999999999999999999999999954 3568999999998753 345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..|||||||||+|||+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~lara 142 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARA 142 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 6899999999999899999998865422 123444556788999999998766643 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (746)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||++++|+ +|+++..++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999999854 5899999999975 5778899999998 59999988754
No 133
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-42 Score=353.19 Aligned_cols=202 Identities=29% Similarity=0.508 Sum_probs=171.9
Q ss_pred EEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc
Q 004539 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~ 228 (746)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|.. ++.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI--KESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEhhhHHhh
Confidence 367899988 22 57999999999999999999999999999999999954 3568999999998753 345
Q ss_pred CcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 229 ~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+.++|++|++. .+..+||+||+.+..... . ...+++.++++.+||.+..++. ++.||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1125678899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999777999999999975 466789999999999975
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-42 Score=353.13 Aligned_cols=207 Identities=32% Similarity=0.553 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--EPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCccchh
Confidence 4689999998 2357999999999999999999999999999999999954 3568999999998731
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.++..... ....++..++++++++.+|+++..++. ++.||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 123444556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 56788999999999974
No 135
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3e-42 Score=355.52 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=175.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ..+.++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchh
Confidence 7899999998210 01136999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH-HHHHHHHcCCC-ccccccccCccccCCCH
Q 004539 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++ .+++.+||+||+.+......+. ......+. ++++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3457899999998 4677899999998865432211 11222222 35888999985 44454 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 004539 378 G 378 (746)
Q Consensus 378 G 378 (746)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
No 136
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.4e-42 Score=357.90 Aligned_cols=219 Identities=26% Similarity=0.416 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT--RPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCeecCCCCH
Confidence 47899999998 2357999999999999999999999999999999999964 3468999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC--C---CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+|+++..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 012234456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 799999999975 577889999999999999999
Q ss_pred CHHHHH
Q 004539 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-42 Score=361.15 Aligned_cols=220 Identities=23% Similarity=0.373 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY--KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc--CCCcceEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999954 3568999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC----------CCC--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 004539 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 291 (746)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234689999999999999999999986431110 000 1122345678889999998766654
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004539 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 899999999975 5778899999999
Q ss_pred CCeEEEecCHHHHH
Q 004539 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
No 138
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=359.28 Aligned_cols=222 Identities=22% Similarity=0.403 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC--CCC-CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~--~~~-~~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 3457999999999999999999999999999999999852 222 148999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .|++||+.++...+. ....+...+.++++++.+||.+..+... +..++.||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34567999999998887 699999998754321 1122334566888999999865322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 4899999999976 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 98874
No 139
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=362.28 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEEcccCCH
Confidence 48899999998 3457999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.+..... ....+..+++++++++.+||.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 305 ~IA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999997 56899999999975 46778999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-42 Score=354.01 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ .+.+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD--NPTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccCC----CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEhhhcCHh
Confidence 6899999998311 11256999999999999999999999999999999999964 3468999999998742
Q ss_pred h---cc-CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ~---~~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..++. ++.||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 22 57999999999998899999999865432 123334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 899999999976 34 558999999999975
No 141
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-42 Score=353.89 Aligned_cols=208 Identities=27% Similarity=0.481 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChh
Confidence 78999999882 2357999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.+..... ..+.++..++++++++.+++.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHH
Confidence 14578999999999888899999999875432 133444456678899999998766643 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++. ++...||++++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999975 466789999999999975
No 142
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=386.68 Aligned_cols=215 Identities=32% Similarity=0.566 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+|+|+ ..+.++|+|+|+++++||.+||+|+||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999994 3455899999999999999999999999999999999984 34 458999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-------ccccccccCccccCCC
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LS 297 (746)
.+++.|++++|...+|.+ |+++||.++. |+ .++ +.+.++++++||+ +..||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLAN----PD-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcC----CC-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 367889999999999975 9999999873 22 233 3355566666654 4567778754 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+-++ |||+|++||+... .+.||+|++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999999775 9999999999875 578999999999999999
Q ss_pred cCHHHHHH
Q 004539 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
No 143
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-42 Score=364.49 Aligned_cols=216 Identities=26% Similarity=0.456 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 2 IRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL--RPQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred EEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEECCccccH
Confidence 78999999982 2356999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQC 144 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHH
Confidence 34678999999975 355689999999875422 234455566788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|+++++
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999877999999999976 45 56999999999999999998876
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 223 ~ 223 (274)
T PRK13644 223 L 223 (274)
T ss_pred h
Confidence 4
No 144
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=364.07 Aligned_cols=221 Identities=25% Similarity=0.417 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ ....+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH--VPTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccccc
Confidence 37899999998311 001246999999999999999999999999999999999954 3468999999998642
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
.+++.|+|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..+. .++.||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 2457799999997 4565 69999999865322 1234445567888999999963 3443 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 56788999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998864
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-42 Score=361.27 Aligned_cols=218 Identities=24% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ...+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE--KVKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCH
Confidence 699999999982 12246999999999999999999999999999999999964 3468999999998742
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. +++..|+++|+.+..... ....+...++++++++.+++.+..++. ++.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 35678999999984 677789999998875422 123444556788999999998766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999864 54 499999999999999999987
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
No 146
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-42 Score=362.99 Aligned_cols=217 Identities=30% Similarity=0.548 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|. +.+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL--KPTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEECccccch
Confidence 78999999982 2346999999999999999999999999999999999954 3568999999998731
Q ss_pred --hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+++.|+|++|++ .+++ .||.||+.++.... ....++..+++.++++.+||.+..++. ++.||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999996 3454 69999998864321 233445556788999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999975 567789999999999999999998
Q ss_pred HHHH
Q 004539 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++..
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 8753
No 147
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-42 Score=361.70 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++. .++
T Consensus 12 ~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~-~~~ 80 (257)
T PRK11247 12 PLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE--TPSAGELLAGTAPLA-EAR 80 (257)
T ss_pred cEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEHH-Hhh
Confidence 59999999998 3457999999999999999999999999999999999964 346899999998763 456
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
+.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..+.. +..||||||||++|||
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~lar 146 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALAR 146 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 789999999999998999999987521 0 1235678899999998766643 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+.||++++|++|++++.|+.+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999865 4899999999975 467889999999999999988754
No 148
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=371.29 Aligned_cols=227 Identities=26% Similarity=0.435 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeeccc--cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+.. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~--~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE--TPTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCcEEEECCEEcCcC
Confidence 5999999999843210 0012357999999999999999999999999999999999964 2468999999998742
Q ss_pred ------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCC
Q 004539 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 296 (746)
.++++|+||+|++ .+.|.+||.+++....... ....+.+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 5889999999998765432 12345566778999999999963 444 356799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||++||..++.++++.|+++.++ |.|+|++|||+. .+.+.||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999975 466789999999999999
Q ss_pred EecCHHHHHH
Q 004539 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+.+++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988753
No 149
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-39 Score=407.39 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||++.|. ++++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4699999999982 124679999999999999999999999999999999999653 568999999998853
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..|+.+|||+|++.+++.+||+||+.+.++.+. .+.++.+++++++++.+||++..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 346789999999999999999999999876542 33445567789999999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|+||||||||+|||+.++..+.+.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999975 577889999999999999999999998
Q ss_pred HHHH
Q 004539 385 AYFS 388 (746)
Q Consensus 385 ~~f~ 388 (746)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7774
No 150
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-42 Score=358.02 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-- 225 (746)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.... ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 235799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+|+ .||+||+.++...+.. .......++++.++++.++|.+...... +..++.||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34678999999999997 6999999987533210 0012334456788999999954221111 23456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||++. ++.+.||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
No 151
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-42 Score=363.90 Aligned_cols=218 Identities=30% Similarity=0.526 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|. +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL--KPTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCH
Confidence 488999999982 2346999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++. ++ ..||.||+.+..... ..+.+...++++++++.+||.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 35678999999973 45 579999998865422 234455566788999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 577899999999999999999998
Q ss_pred HHHH
Q 004539 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 152
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-42 Score=378.91 Aligned_cols=203 Identities=26% Similarity=0.463 Sum_probs=178.3
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h----ccCcEEEEecCCcCCC
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLFP 242 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~Q~~~l~~ 242 (746)
.+|+|+||+|++||+++|+||||||||||+|+|+|.. . +.+|+|.++|+++.. . .+++++||+|++.+|+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-E-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4899999999999999999999999999999999954 3 468999999998742 1 1357999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 004539 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEP 322 (746)
++||+||+.++...+ ..+.++..+++.++++.+||.+..++. ++.|||||||||+|||||+.+|++||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999986543 233455567788999999998766654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999975 4899999999975 577899999999999999999998875
No 153
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.2e-42 Score=361.78 Aligned_cols=220 Identities=27% Similarity=0.484 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... |. .+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccc
Confidence 68999999998 34579999999999999999999999999999999999643 32 36999999988632
Q ss_pred --------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004539 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
..++.++|++|++.+++.+||+||+.+......+. ....+..+++++++++.+||++..+..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 149 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR----- 149 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----
Confidence 23567999999999999899999998764211100 011233456788999999998766654
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~ 228 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ 228 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999764 899999999975 46788999999999
Q ss_pred CeEEEecCHHHH
Q 004539 372 GSLLYFGKASEA 383 (746)
Q Consensus 372 G~iv~~G~~~~~ 383 (746)
|++++.|++++.
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999998763
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-42 Score=360.03 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=185.9
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~ 223 (746)
...++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3469999999998 234699999999999999999999999999999999996531 2 3589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. .++++++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999998887 799999998754221 1334445567889999999853211111 23456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-42 Score=361.34 Aligned_cols=220 Identities=26% Similarity=0.456 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL--TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCcEEEECCEEhHHCCH
Confidence 48899999998 3457999999999999999999999999999999999954 3468999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|+.||+.++...... .........++++++++.+||.+..++. ++.||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999886321000 0011223455678899999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 4
No 156
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=371.84 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC--CCCccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~- 225 (746)
.|+++||+++|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999999432 1345799999999999999999999999999999999996532 1358999999998742
Q ss_pred ---h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCC---CcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004539 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 226 ---~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
. .++.|+||+|++. +.|.+||.+++........... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 112344567889999999975322 113456
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999999874 899999999975 577889999999999
Q ss_pred eEEEecCHHHHH
Q 004539 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 157
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.2e-44 Score=386.81 Aligned_cols=361 Identities=25% Similarity=0.319 Sum_probs=276.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhhh
Q 004539 13 TKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALS 92 (746)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 92 (746)
.-+|.....+..++.+.-+.|+++|-+-.+.+.++..+.-....+..+.-....|.+.-.|+.+-+.+|.--+-.|+-++
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 33556666666777777788999999998999888887776666665555555666666688888888888888999999
Q ss_pred hhcccccchhhhhcc---ccc-Chhhhcc-CCC-----CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEeec
Q 004539 93 RASSASLGLSFSFTG---FTM-PPDEIAD-SKP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILK 162 (746)
Q Consensus 93 ~~~~~~~~~~~~~~~---~~~-~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~~ 162 (746)
-.+.++-|....=+- -.. |.+.... .+. .++.++.+-+..-+...+ ....|.....|.++++++.
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-~m~LP~P~g~L~Ve~l~~~---- 343 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-RMPLPAPQGALSVERLTAA---- 343 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-CCCCCCCCceeeEeeeeec----
Confidence 999999998754332 222 2221110 010 122223333322222111 1233444457999999873
Q ss_pred cccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCC
Q 004539 163 GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD 238 (746)
Q Consensus 163 ~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~ 238 (746)
++..++++|+|+||++.+||.++|+||||||||||.|+|.|.. ++.+|.|.+||.++++ .+-++|||.|||-
T Consensus 344 --PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 344 --PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred --CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 3556789999999999999999999999999999999999954 3569999999998853 4568899999999
Q ss_pred cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEE
Q 004539 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (746)
Q Consensus 239 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ill 318 (746)
.||+. ||.|||.=...-..++.+-++.+.+.++|++-. +++.+||.||+.. ..||||||||+++||||..||.+++
T Consensus 420 eLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 420 ELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred eecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99985 999999732211111112233444557777765 4999999999754 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 004539 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (746)
||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++-.+|+.+|+++...
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999999999999999999999987 578899999999999999999999998764
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.2e-42 Score=361.84 Aligned_cols=226 Identities=23% Similarity=0.428 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|.... ....+++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE--KPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEccccC
Confidence 488999999983210 00012467999999999999999999999999999999999954 3568999999998742
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .++.||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 4677899999998764321 1123344556788999999996 45554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998875
No 159
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=362.42 Aligned_cols=218 Identities=27% Similarity=0.480 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. .+++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 7 MIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL--KPQSGEIKIDGITISKENL 78 (271)
T ss_pred EEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCcCCH
Confidence 699999999982 12457999999999999999999999999999999999954 3568999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++. .++.+||+||+.++.... ..+.++..++++++++.+||.+..++. ++.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQR 150 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566789999999875322 123444556788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+.++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999766 5999999999864 4 4799999999999999999887
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 229 ~~ 230 (271)
T PRK13632 229 IL 230 (271)
T ss_pred Hh
Confidence 64
No 160
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-42 Score=362.08 Aligned_cols=220 Identities=25% Similarity=0.426 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCCH
Confidence 69999999998 2357999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++.+++.+||.||+.++...... ....+....++++++++.++|++..++. ++.||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 3456799999998888889999999876321100 0011123345688999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999975 5778899999999999999999877
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
No 161
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.9e-42 Score=353.79 Aligned_cols=210 Identities=27% Similarity=0.499 Sum_probs=173.5
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCc
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~ 230 (746)
+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL--KPTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCccHH-HHHhh
Confidence 367899988 2356999999999999999999999999999999999954 346899999998764 45678
Q ss_pred EEEEecCCcCC--CCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 231 i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++|++|++.++ ..+||+||+.+....... .....+...++++++++.+++++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999886432110 0011233456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999975 577889999999886 66654
No 162
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-42 Score=360.88 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 245799999999999999999999999999999999996532 1368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++. ||.||+.++...+.. ..++....+++.++++.+||.+...... +..++.||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 246779999999998875 999999987543211 0123344567888999999964211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88764
No 163
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.4e-42 Score=351.30 Aligned_cols=206 Identities=30% Similarity=0.542 Sum_probs=173.0
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
+++|++++|. +.++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEcccCCHHH
Confidence 3688999882 11257999999999999999999999999999999999964 3568999999998742 3
Q ss_pred ccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++|++|++. .++.+||+||+.+..... ........++++++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4678999999974 355689999998865422 123344456788999999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 5677899999999985
No 164
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=357.19 Aligned_cols=223 Identities=22% Similarity=0.408 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 235699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++.+||+||+.++.... ......+.++++++.++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 34678999999999999899999998764321 11223344566888999999864221111 1345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 5678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=362.33 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~- 225 (746)
.|+++|+++.|. ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.. +|+|.++|+++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..+++++||+|++. +++..||+||+.|..... ..+.++..+++.++++.+||.+..++. ++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHH
Confidence 34678999999974 566789999999864322 234556667889999999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 8999999999764 4 57999999999999999999
Q ss_pred HHHHH
Q 004539 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
No 166
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.8e-42 Score=354.89 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-CCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.++..... .. ..+.++++++.++ +.+..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999998999999998754321 11 1233566777775 4544444 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 5777899999999999999999887
Q ss_pred H
Q 004539 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=362.41 Aligned_cols=222 Identities=23% Similarity=0.409 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|.... +..++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL--IPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEecccccc
Confidence 699999999983210 011357999999999999999999999999999999999964 3568999999998742
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++||+|++. +++ .||.||+.|+.... ..++.+.+++++++++.+||.+..++. ++.||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 34678999999974 454 69999999875422 234455567789999999998877764 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999
Q ss_pred HHHHH
Q 004539 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 88754
No 168
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.5e-42 Score=351.93 Aligned_cols=210 Identities=29% Similarity=0.494 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL--RPTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEeccccccc
Confidence 4789999988 2357999999999999999999999999999999999964 35689999999987543345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+|++||+.+...... .. .+++.++++.+||++..+.. +..||||||||++|||+
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 24577889999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877999999999975 4678899999999999999998753
No 169
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=358.49 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... +. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 59999999998 245799999999999999999999999999999999996531 21 48999999998741
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+...... ...+++..++++++++.+++.+...... +..+++||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346779999999999885 99999988753221 1123444566788899998854211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 799999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
No 170
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=347.15 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=205.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+++++|+++| +++.+++|+||.++||++.+++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 48899999988 67899999999999999999999999999999999999653 458999999999998889
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
.+|||.|.+.-|+|.+||.|.|.|.+.++ .+++++.++++..+|+++++......+ +.+||.|++|++.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 477888999999999999998766654 4789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975 689999999999999999999999988755
No 171
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7e-42 Score=359.56 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL--RPDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEEcccCCHH
Confidence 6889999998 3457999999999999999999999999999999999954 3468999999998743
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998777789999999885321000 0011123345788999999997766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++.|+.+++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 477899999999999999999988763
No 172
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.6e-42 Score=354.57 Aligned_cols=216 Identities=27% Similarity=0.502 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE--QPDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCChh
Confidence 4789999998 2457999999999999999999999999999999999964 3468999999998753 33
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+|+.+|++||+.+....+ ........+.++++++.+++.+..++. ++.|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 123334456778999999997666654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998775 899999999975 567889999999999999999988874
No 173
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=361.47 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM--TPAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEEhhhCCH
Confidence 69999999998 2457999999999999999999999999999999999964 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.++.....+. ....+...++++++++.+||.+..++. ++.||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHH
Confidence 34567999999999998899999998753111000 001123445688999999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999975 5788999999999999999999887
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
No 174
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=359.07 Aligned_cols=224 Identities=24% Similarity=0.383 Sum_probs=187.4
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeC
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~ 223 (746)
...|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3479999999998 346799999999999999999999999999999999996532 14689999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ..++.++|++|++.+++ .||+||+.++.... ....++..++++.++++.++|.+..+... +..++.||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24677999999998887 59999999875321 11233445567888999999864322222 24567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.+.||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999976 57789999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998864
No 175
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=358.06 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (746)
.++++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235799999999999999999999999999999999996532 1 25899999998863
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..+++.++|++|++.+++.+||+||+.++...+. .......+++++++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999998999999998754321 1123444567888999998842111111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCe
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~ 373 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999965 789999999975 4778899999997 799
Q ss_pred EEEecCHHHHH
Q 004539 374 LLYFGKASEAM 384 (746)
Q Consensus 374 iv~~G~~~~~~ 384 (746)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
No 176
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1e-43 Score=410.49 Aligned_cols=338 Identities=22% Similarity=0.257 Sum_probs=226.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++.++..+...|.....+++|+++.+..+.+++.+...+......+.................-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888899999999999999999999888876555443322210000000000000111111111123444
Q ss_pred hhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEE
Q 004539 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
.....|.++.|....+..+. .|...+..... .+..++.+.++..+...+.....+.....++++||+|+|
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y 330 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAY 330 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEEC
Confidence 45556777777777665433 22222110000 000111111110000000000001111369999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEe
Q 004539 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yv~ 235 (746)
+ ..++++|+|+|++++|||.++|+||||||||||+|+|+|. ++ +.+|+|.+||+++. +.+|++++||+
T Consensus 331 ~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 331 P------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred C------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 3 2235799999999999999999999999999999999984 43 45899999999875 35788999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHH
Q 004539 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
|++.+|+ .|++||+.++.. ..+++ +++++++..+ +++..||.+|+. ...||||||||++|||
T Consensus 403 Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~qri~laR 471 (529)
T TIGR02857 403 QHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQRLALAR 471 (529)
T ss_pred CCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHHHHHHHH
Confidence 9999997 599999998631 12222 2333333333 356778988864 4569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999975 48999999999853 5789999985
No 177
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=355.93 Aligned_cols=222 Identities=28% Similarity=0.449 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 24579999999999999999999999999999999999532 231 48999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++||+|++.+++ +||+||+.++..... ........+++.++++.+++.+...+.. +..++.||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHH
Confidence 34677999999999887 799999998754321 1122334566788899998753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=351.62 Aligned_cols=216 Identities=28% Similarity=0.473 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCChh
Confidence 4689999998 3457999999999999999999999999999999999954 3458999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+....+. .......++++++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5679999999999988999999998754331 23344456788899999998777654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999865 899999999975 477889999999999999999987764
No 179
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=357.12 Aligned_cols=204 Identities=29% Similarity=0.492 Sum_probs=186.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-------h-ccCcEEEEecCCcCCC
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDVLFP 242 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------~-~~~~i~yv~Q~~~l~~ 242 (746)
.-++|+|++|+.||+..|||-||||||||+++|.+ +.+| +.|+|+++|.++.+ + .++++++|||...|+|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999995 5554 58999999998742 2 3567999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 004539 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEP 322 (746)
+.||.||..|+...+ .++++++++++.+.|+.+||..+.+. ++++|||||||||.|||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998765 57899999999999999999998875 5689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+|||--+.++.+.|.+|.++ +||||++|||+. |.+++-|||.+|++|+|+..|+|+|++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999765 899999999976 5789999999999999999999999873
No 180
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-41 Score=347.90 Aligned_cols=208 Identities=25% Similarity=0.444 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++|. ++. .|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE--TPQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcCcCCHh
Confidence 46899999882 222 3999999999999999999999999999999964 3568999999998743 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.++..... .. ....++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999998999999987643211 11 223455788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999975 466889999999999998764
No 181
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=354.67 Aligned_cols=212 Identities=31% Similarity=0.487 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI--DPTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEhhhcCh
Confidence 48999999998 2456999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999887 69999998754321 1 1234677899999996 34443 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999975 4678899999999999999999988
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
No 182
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=366.16 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++|++++|. .+.+.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999983 1335699999999999999999999999999999999985421 135899999999985
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCc-HHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
..+++.++||||++.+|+ .|++||+.|+.... ..+ ++..++.+.+.++.++|.+..++.++ .....||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 79999999875321 122 23334557788899888655555554 3467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
No 183
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=353.97 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 48999999998 235799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +|++||+.++..... ....+..+++++++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34677999999999887 899999998754321 1123344567788888888753211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 899999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=362.24 Aligned_cols=221 Identities=24% Similarity=0.398 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|..+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI--ISETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEcccccc
Confidence 589999999983110 00135999999999999999999999999999999999964 356899999998863
Q ss_pred -----hhccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004539 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..+++.|+|++|++. +++ .||+||+.++.... ....+...+++.++++.++|+ +..++ .++.|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134567999999973 454 69999999875321 123444456678899999995 44554 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 577899999999999999
Q ss_pred EecCHHHHH
Q 004539 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
No 185
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=356.92 Aligned_cols=226 Identities=26% Similarity=0.459 Sum_probs=192.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC--
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~-- 224 (746)
|+++||+..|... .+...+++||||++++||++||+|.|||||||+.+.|.|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999988532 23467999999999999999999999999999999999876523 25799999999763
Q ss_pred -h----hc-cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCC-cHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004539 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 225 -~----~~-~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+ .+ .+.|+++|||+ .|.|.+||.+.+.-..... ... .+++..+++.++|+.+||++-.. +.+.++++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 22 35799999997 5889999998887665432 122 45667788999999999986432 34578999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||..|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999986 47899999999999999
Q ss_pred EEecCHHHHH
Q 004539 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
No 186
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=354.91 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999988 245799999999999999999999999999999999996431 2 358999999988642
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..++.||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999998885 99999998743321 11122334456788999999965322211 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+.||++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 5678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
No 187
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=358.38 Aligned_cols=219 Identities=24% Similarity=0.424 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF--EEFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCEEEECCEECCcCCH
Confidence 5899999999831 12346999999999999999999999999999999999964 3568999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. .++..||.||+.++.... ..++++..++++++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566689999998865421 233445556788999999998766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 4 4699999999999999999988
Q ss_pred HH
Q 004539 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 65
No 188
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.2e-41 Score=349.45 Aligned_cols=213 Identities=31% Similarity=0.478 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD--DGSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCeeEEECCEEcccCCH
Confidence 59999999998310 01135999999999999999999999999999999999954 3468999999998742
Q ss_pred -h---c-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~---~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
. . ++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..+.. +..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge 151 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGE 151 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHH
Confidence 1 2 257999999999999899999998865332 123344567789999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ +.||++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999764 899999999976 34 56999999999999753
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.7e-41 Score=373.16 Aligned_cols=206 Identities=24% Similarity=0.409 Sum_probs=180.2
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE----eCCh----h---c-cCcEEEEe
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---L-KSKIGFVT 235 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~----~~~~----~---~-~~~i~yv~ 235 (746)
+...+|+|+||+|++||+++|+||||||||||+++|+|.. . +.+|+|+++|+ ++.. . . +++++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-P-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3457899999999999999999999999999999999954 3 46899999996 3321 1 2 25799999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004539 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
|++.++|.+||+||+.++...+ ..++++.++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986432 234566677889999999998877654 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||||||+|||+.++.++.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|++++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999875 899999999975 577999999999999999999998875
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=350.76 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++||+++|. ++. .|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCeecCcCChh
Confidence 78999999982 222 3999999999999999999999999999999954 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999998999999987532111 11 223456788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467889999999999999999988764
No 191
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=353.05 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 4 KMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred EEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 68999999998 235699999999999999999999999999999999996431 1 258999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.++|.+...... +..++.||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 151 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGG 151 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 24677999999999997 899999998754321 1123344566788999998853211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999876 689999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14270 230 TEKIF 234 (251)
T ss_pred HHHHh
Confidence 98864
No 192
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=353.00 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.....+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 58999999998 24579999999999999999999999999999999999653211 37999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++.+|+.||+.++..... ...+++..+.+++.++.+++.+..... .+..++.||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 345679999999999998999999987653221 112333455667777777664211111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 799999999975 5777899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 193
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3e-43 Score=442.49 Aligned_cols=350 Identities=21% Similarity=0.265 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004539 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++..++..+.++|++++.+||++|+++..+.++|.+........+.+.....+.+.........-..+..++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987666555544332222222211111111222344556788
Q ss_pred hhhhhc--------ccccchhhhhc--------cccc--Ch-hhhccCCCCCCCCCcccccccCCCC--CCCCCCCCCCc
Q 004539 90 ALSRAS--------SASLGLSFSFT--------GFTM--PP-DEIADSKPFSDDDIPEDIEAGTRER--PKFQTEPTLPI 148 (746)
Q Consensus 90 ~~~~~~--------~~~~~~~~~~~--------~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 148 (746)
.++..+ ..+.|.+.++. .+.. |. ..+..... +..++.+.+...+... ......+. ..
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~-a~~ri~~ii~~~~~~~~~~~~~~~~~-~~ 381 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE-ATNSLYEIINRKPLVENNDDGKKLKD-IK 381 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCCCCccCCC-CC
Confidence 777664 22333222211 1100 00 00000000 0011111111110000 00000111 12
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE-CCEeCC---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS--- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~-~G~~~~--- 224 (746)
.|+++||+|+|+. +.++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 382 ~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchhhCC
Confidence 6999999999931 1235799999999999999999999999999999999984 44 45899999 567764
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC----------CC-----------------------------CC--
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------TL-- 262 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~~-----------------------------~~-- 262 (746)
+.+|++||||+|++.+|+ .||+|||.++..... +. ..
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 246788999999999997 599999999742100 00 00
Q ss_pred -------cHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004539 263 -------TKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 263 -------~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
.....++.+.++++.++ |++..||.+|.. ...||||||||++|||||+++|+|||||||||+||+
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 00011234556655554 456678888754 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 329 TTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 329 ~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.++..+.+.|+++.+ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999975 58999999999864 4789999999986
No 194
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=352.70 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 1 258999999988742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++ .||+||+.+...... ...++..++.+++.++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34677999999999987 899999998754321 112333455678889998886422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
No 195
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2e-41 Score=371.89 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=180.6
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------
Q 004539 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------- 225 (746)
||+++| +++. + |+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~--~p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT--RPDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECccCccccccc
Confidence 788887 2233 4 999999999999999999999999999999954 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.++||+|++.+|+++||+||+.|+.... ...+.+++++++++.+||.+..++. +++|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24577999999999999999999999875421 1233456788999999998777654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 577889999999999999999998875
Q ss_pred H
Q 004539 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
No 196
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.9e-41 Score=357.12 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeecccc-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|..+... ..+++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCc
Confidence 58999999998311000 012357999999999999999999999999999999999964 3468999999998752
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHH
Q 004539 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44444 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999764 899999999975 5777899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-41 Score=349.43 Aligned_cols=215 Identities=30% Similarity=0.542 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|+++.| ++ ++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~--~p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI--KPDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcCcCChh
Confidence 4689999988 22 3899999999999999999999999999999999954 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999998899999999875322 123444556778899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998765 899999999975 467789999999999999999988764
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=390.15 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|... + +.+|+|.++|.++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 59999999998 34579999999999999999999999999999999999653 3 368999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||++..+.. +++|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13467999999999999999999999875422111123344456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 5778899999999999999998765
Q ss_pred H
Q 004539 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
No 199
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=356.32 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 469999999998 345699999999999999999999999999999999996431 046899999999863
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+++.++||+|++.+++ .||+||+.+.+..+. ... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 134677999999999998 499999998764321 122 2345667788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-------
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~------- 371 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999965 799999999975 57889999999996
Q ss_pred ----CeEEEecCHHHHHH
Q 004539 372 ----GSLLYFGKASEAMA 385 (746)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (746)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
No 200
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=370.38 Aligned_cols=207 Identities=28% Similarity=0.484 Sum_probs=180.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|++ ||+++| +++. + |+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~--~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT--RPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccccc
Confidence 667 899888 2222 3 899999999999999999999999999999964 3468999999988642
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++||+|++.+|+++||+||+.|+.. ....++++++++.+||.+..+.. +++||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 236789999999999999999999998642 12345688999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 899999999975 57889999999999999999999
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9875
No 201
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-41 Score=355.60 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965321 368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++. ||+||+.+...... ...++..+++++++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999985 99999988754321 1123334456788899988864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
No 202
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=342.61 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.+.|+||+|.|+.+ ++++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 47899999999542 24568999999999999999999999999999999999964311 568999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999999999998763210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6787777776555678899999999999998765
No 203
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.4e-43 Score=442.20 Aligned_cols=217 Identities=23% Similarity=0.368 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+++|+|+|++|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|++
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 3699999999993 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
+.+|++|++||||+.+|+. |+||||.++. ..++++. ...+++.++. +++..||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~--lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRR--NSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHh--CccccCccccCC-CCCCCH
Confidence 3678999999999999985 9999998642 1222222 1222334433 366789999864 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||||+++|+||+||||||+||++++..|.+.|++..+ ++|+|+++|+++. ...||+|++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998754 8999999999875 4569999999999999999
Q ss_pred CHHHHHH
Q 004539 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999975
No 204
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-43 Score=374.22 Aligned_cols=341 Identities=26% Similarity=0.352 Sum_probs=240.3
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccee--------cchhchhhh
Q 004539 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLE--------LDEVSSGAA 90 (746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~ 90 (746)
.++.+.|..|+-+-|||+-|+.+.-+..+|..-+++--....| .| .|..+..-++ ..-...++.
T Consensus 119 s~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k------~~--~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~ 190 (497)
T COG5265 119 SDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK------VH--VSLLVLNFGQTAIFSTGLRVMMTMSAL 190 (497)
T ss_pred hHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH------HH--HHHHHHHHhhHHHHHHHHHHHHhhcHH
Confidence 4556677788888899999999988888887655432211110 00 0111100000 000112223
Q ss_pred hhhhcccccchhhhhcccccChh-----------hhccC-----CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEe
Q 004539 91 LSRASSASLGLSFSFTGFTMPPD-----------EIADS-----KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 154 (746)
.+..+.++.|.......+..+.. ++... .++...+.+.++...+..++- .+..+..+.|+|
T Consensus 191 ~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L---~~~~~g~v~F~~ 267 (497)
T COG5265 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPL---WPVRLGAVAFIN 267 (497)
T ss_pred HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccc---cccccceEEEEE
Confidence 33344555555444433222111 11111 112222222222222211111 112345699999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 004539 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~ 230 (746)
|+|.|. +.+++|+++||++++|+.+|++||||+||||++++|- |++++. +|.|.+||+++. +.+|+-
T Consensus 268 V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 268 VSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred EEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHHhHHHHHHHH
Confidence 999983 5679999999999999999999999999999999999 677754 899999999985 357899
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH
Q 004539 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
||.||||..||.+ |...|+.|+..-...++...+.+.+++.++++.+ ++..|+.||.++.+ |||||||||+|||++
T Consensus 339 Ig~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vgerglk-lSggekqrvaiar~i 414 (497)
T COG5265 339 IGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLK-LSGGEKQRVAIARTI 414 (497)
T ss_pred hCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheee-ccCchHHHHHHHHHH
Confidence 9999999999975 9999999984322111122223334556666655 89999999987665 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004539 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
+++|+||+|||.||+||..++++|...|+++.+ |+|.+++.|++++ + -.+|.|+||++|+|++.|+|+++++.
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999999874 9999999999986 3 45899999999999999999999863
No 205
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=339.76 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++|+++.|... ..++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 48999999998321 11357999999999999999999999999999999999964323568999999998765566
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEec
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (746)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999986446788999999999 9999876
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=351.53 Aligned_cols=221 Identities=24% Similarity=0.385 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 2457999999999999999999999999999999999964311 258999999988731
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++.+++ .||.||+.++.... ....+...++++.+.++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 34677999999999997 79999999875321 11123344566778888888754221111 23456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHH
Q 004539 381 SEA 383 (746)
Q Consensus 381 ~~~ 383 (746)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 775
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.2e-41 Score=343.40 Aligned_cols=209 Identities=26% Similarity=0.479 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++||++.|. .+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI--EPASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEEcccCChh
Confidence 47899999881 2468999999999999999999999999999999954 3568999999998743 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+|+.||+.+...... . .....+++++++++.+||++..++. ++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHH
Confidence 6779999999999998999999987643211 1 1122345678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 4667899999999999999875
No 208
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-41 Score=350.81 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +.+++|+|+|++|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996531 2 358999999998631
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .||+||+.++..... ...++..+++++++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 24667999999999886 799999988653221 112233445678889999885221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98764
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=351.27 Aligned_cols=222 Identities=27% Similarity=0.415 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999995431 21 47999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+...+.. +..++.||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHH
Confidence 235679999999999984 999999987543211 122334556788888888754221111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4667899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 88764
No 210
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-41 Score=357.77 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC-------CccEEEECCEe
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~-------~~G~I~~~G~~ 222 (746)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. +. .+|+|.++|.+
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999988 34579999999999999999999999999999999999653 22 17999999998
Q ss_pred CCh----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 223 ~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
+.. .+++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999886321100 011112344568889999999866554 346899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 004539 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 298 GGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999876 899999999975 5778899999
Q ss_pred EEeCCeEEEecCHHHHH
Q 004539 368 LLGKGSLLYFGKASEAM 384 (746)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-41 Score=353.66 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 59999999998 34579999999999999999999999999999999999532 11 468999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 246679999999999885 99999998643221 112223345677888888885321111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
No 212
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=350.12 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (746)
.++++||+++| +++.+|+|+|++|++|++++|+||||||||||+++|+|... +. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 23569999999999999999999999999999999999643 32 2699999998864
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. .+++.++||+|++.+++. |++||+.+....+.. ..++...+++++.++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999985 999999987543211 11223345677788888875422211 1244678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999975 467889999999999999999
Q ss_pred CHHHHH
Q 004539 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988764
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-41 Score=352.24 Aligned_cols=214 Identities=31% Similarity=0.538 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. ...+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY--VPENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCEEEECCeehHhcCHH
Confidence 47899999882 12357999999999999999999999999999999999964 3568999999998642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHc--CCCccccccccCccccCCCH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
.+++.++|++|++.+++ .||+||+.+.... ...... .....+.++.+ ++.+..+ ..+++|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34677999999998886 6999999875321 111111 11223444444 3333222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999864 4 569999999999999999
Q ss_pred CHHHHHH
Q 004539 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+++++.+
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888654
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=353.64 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+|+||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 235699999999999999999999999999999999996531 2 468999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++ .||+||+.++..... ...+...++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999887 599999998754221 1122233455677777775432111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
No 215
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.9e-41 Score=351.22 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (746)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL--APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCcccccccc
Confidence 59999999998 2357999999999999999999999999999999999954 3468999999987 5
Q ss_pred Ch----h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 004539 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (746)
Q Consensus 224 ~~----~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 292 (746)
.. . .++.++||+|++. +++.+|+.||+.+...... .....+.++++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2456999999973 6777899999976532111 1122334566889999999963 4443 3
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||++++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=354.17 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC----CCccEEEECCEeCC
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~~ 224 (746)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 34679999999999999999999999999999999999643 3 35899999998874
Q ss_pred h-----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 ~-----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
. .+++.++|++|++.+|+ .||+||+.++.... ...+..+..+++.+.++.++|.+..++.. +..++.||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 79999999864321 11233444456778899999875432222 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
No 217
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-41 Score=332.07 Aligned_cols=217 Identities=29% Similarity=0.540 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+.+|++|+. ..+.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 37889999987 56789999999999999999999999999999999999653 468999999999863
Q ss_pred -hccCcEEEEecCCcC-CCCCCHHHHHHHHHhccCCCCC--cHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
++.++-+.+||+..+ || .||+|.+.++. .|... ...+..+.+++++...++.+.+... ...||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEq 141 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQ 141 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHH
Confidence 455677999999877 65 69999999985 34322 2235555678899998888766543 368999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 302 KRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 302 qRv~IA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||.+||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||+.- ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999975 456999999999999999999999999999999999999999875 56899999999999999
Q ss_pred EecCHHHHHH
Q 004539 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
..|++++++.
T Consensus 221 a~g~p~~vlt 230 (259)
T COG4559 221 ASGSPQDVLT 230 (259)
T ss_pred ecCCHHHhcC
Confidence 9999998763
No 218
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-42 Score=440.69 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+++|+|+|++|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||+|++
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999993 233579999999999999999999999999999999996 4544 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCC
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~L 296 (746)
+.+|++|+|||||+.+|+. |+||||.++. ..+++ ++.++++..+ +++..||.+|+. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3578999999999999985 9999998642 12332 2333343333 356788998864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+++|+++. ...||+|++|++|++++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 45699999999999999
Q ss_pred ecCHHHHHH
Q 004539 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+|+++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
No 219
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.5e-42 Score=438.01 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+|+||+|+|+ .+.+++|+|||++|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|+++
T Consensus 1283 g~I~f~nVsf~Y~------~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR------EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeC------CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 4699999999993 223479999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCC
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~L 296 (746)
.+|++|+|||||+.+|+. |+||||.... ..++++ +.++++..+ +++..||.+|+. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 678999999999999985 9999997321 123322 333444433 356789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999864 56799999999999999
Q ss_pred ecCHHHHHH
Q 004539 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
No 220
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=342.14 Aligned_cols=203 Identities=30% Similarity=0.504 Sum_probs=173.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (746)
.+ ||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE--KPDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEecccccchh
Confidence 44 888888 23444 99999999 999999999999999999999964 3468999999988641
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+.. ++.|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHH
Confidence 23567999999999998899999998865321 2334456788999999998665543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999875 899999999975 466889999999999998875
No 221
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=385.24 Aligned_cols=219 Identities=23% Similarity=0.400 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY--TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 58999999998 3457999999999999999999999999999999999965 3458999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
. .++.++||+|++.+++.+||+||+.++...... ...+..+.+++++++++.+||++..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122334456788999999998776654 4589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999998765
Q ss_pred H
Q 004539 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 222
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=350.61 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-C--CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~--~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|..... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 58999999998 2356999999999999999999999999999999999964321 2 48999999998732
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+|+ +||+||+.++...+. ...+....+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34568999999999997 899999988754321 123334456678889988884321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-----CCeE
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-----~G~i 374 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 699999999975 5778999999998 5999
Q ss_pred EEecCHHHHH
Q 004539 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
No 223
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=347.43 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .+. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 58999999998 23579999999999999999999999999999999999642 121 48999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .||+||+.+....+.. ..++..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34578999999999998 6999999987543211 12222344567778888764221111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
+.+..
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
No 224
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.9e-41 Score=347.96 Aligned_cols=200 Identities=33% Similarity=0.491 Sum_probs=171.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEe-cCCcCCCC
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPH 243 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~ 243 (746)
+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL--QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4567999999999999999999999999999999999954 3468999999987532 3467899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004539 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
+||+||+.+..... ....++..+++.++++.+||++..++.+ ..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 1234445566788999999988777654 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 899999999975 577889999999999998765
No 225
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=350.11 Aligned_cols=222 Identities=23% Similarity=0.417 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 59999999998 23469999999999999999999999999999999999653 31 3799999998863
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCH
Confidence 134677999999999988 899999988653221 1123344567888999998854322211 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC-----C
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-----G 372 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57889999999999 9
Q ss_pred eEEEecCHHHHH
Q 004539 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999874
No 226
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=385.32 Aligned_cols=219 Identities=25% Similarity=0.408 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH--EPTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc--CCCccEEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhcc--C-C-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +++||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998754210 0 0 0012334456788999999998776654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+...||++++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999975 4778899999999999999999
Q ss_pred HHHH
Q 004539 380 ASEA 383 (746)
Q Consensus 380 ~~~~ 383 (746)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
No 227
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=355.33 Aligned_cols=222 Identities=23% Similarity=0.368 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 39 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 39 HVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred EEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 69999999998 23469999999999999999999999999999999999542 13 368999999988642
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++||+|++.+++. ||.||+.++...... .+....++++.++++.+++.+..... -+..+..||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 186 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGG 186 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHH
Confidence 246789999999998875 999999987543211 12233445677888888874211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~ 264 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 689999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 265 ~~~~~ 269 (286)
T PRK14275 265 TAQLF 269 (286)
T ss_pred HHHHH
Confidence 88864
No 228
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-40 Score=346.74 Aligned_cols=222 Identities=24% Similarity=0.344 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 59999999998 2356999999999999999999999999999999999953223568999999998743
Q ss_pred -hccC-cEEEEecCCcCCCCCCHHHHHHHHHhccCC----CCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCH
Q 004539 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 -~~~~-~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 1222 488999999999999999999876432110 0112223345678899999997 34444321 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999998779999999999753 4454 899999999999999
Q ss_pred cCHHHH
Q 004539 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999854
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-42 Score=326.92 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. +..|+|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999888 6678999999999999999999999999999999998 4543 56899999998762
Q ss_pred -------------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCc
Q 004539 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (746)
Q Consensus 225 -------------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 291 (746)
+.+|.+.++|+|+.+|++++||.||+.-+...-+ ..++.+..++++.+|+.+||.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246779999999999999999999976532211 35678888899999999999887774
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. ..+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999764 5678899999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999874
No 230
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.1e-40 Score=348.03 Aligned_cols=216 Identities=20% Similarity=0.345 Sum_probs=180.5
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| ++.+|+|+|+++++||+++|+||||||||||+++|+|... + +++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 368999999987 2369999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc---ccccccCccccCCC
Q 004539 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ~-~-~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LS 297 (746)
. . .++.++||+|++. +.+.+|+.+++.+.+.... ... .++++.++++.++|.+. .++ .+..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS 142 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMS 142 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccC
Confidence 3 2 2357999999974 4566799999876543211 111 23568889999999752 333 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 4668899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 222 ~~~~~~~~ 229 (254)
T PRK10418 222 QGDVETLF 229 (254)
T ss_pred ecCHHHHh
Confidence 99988864
No 231
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=346.78 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.++++||++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.+||+++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 48899999988 245799999999999999999999999999999999995421 2 368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+|+. |+.||+.++.... .....+..++++.+.++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 9999998865322 11223344567888999998854322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 899999999975 5788899999999999999999
Q ss_pred HHHHH
Q 004539 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-40 Score=382.74 Aligned_cols=213 Identities=24% Similarity=0.439 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.++|.++..
T Consensus 11 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 11 LLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV--PPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred eEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 69999999998 3457999999999999999999999999999999999964 3568999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
. .++.++||+|++.+++.+||+||+.+.... ....+++++++++.+||.+..+.. +..||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 148 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQI 148 (510)
T ss_pred HHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHHH
Confidence 1 235699999999999999999999885321 123446788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999999999888999999999975 47788999999999999999998765
Q ss_pred H
Q 004539 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 228 ~ 228 (510)
T PRK15439 228 S 228 (510)
T ss_pred C
Confidence 3
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2e-40 Score=334.54 Aligned_cols=191 Identities=52% Similarity=0.894 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.++++||+++|.... ...++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 489999999983210 011367999999999999999999999999999999999954113568999999998864 45
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999989999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998765
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.2e-40 Score=340.48 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|+++.|..+ .+++.+|+|+||++++|++++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999988311 11367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|+.||+.++..... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 133445566789999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. +.+.||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999976 4899999999975 4589999999999986
No 235
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.3e-40 Score=338.14 Aligned_cols=198 Identities=28% Similarity=0.505 Sum_probs=169.5
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---
Q 004539 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~--- 225 (746)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEccccchhhH
Confidence 36888888 2457999999999999999999999999999999999964 346899999999853 1
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||++..++. +++||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23568999999999999899999999875432 223445566788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ..+.||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877999999999975 34689999875
No 236
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=349.54 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 369999999998 235799999999999999999999999999999999996432 1 25899999999873
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. .+++.|+|++|++.+++. ||.||+.++...+. ... ..++.+.+.++.+++.+..... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998874 99999998653221 111 2234466778887774221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe--------
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-------- 370 (746)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999975 5778999999998
Q ss_pred -CCeEEEecCHHHHH
Q 004539 371 -KGSLLYFGKASEAM 384 (746)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999998874
No 237
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=350.47 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 369999999998 235799999999999999999999999999999999996531 146899999998863
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. ..++.++|++|++.+++. ||+||+.+...... ... ...++++++++.++|.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988885 99999998754321 122 33456888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE-EEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||+++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 5677899975 6799999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
No 238
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.3e-40 Score=350.48 Aligned_cols=226 Identities=24% Similarity=0.451 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeecccc-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|...+.. ...++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE--SPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEeccccC
Confidence 48999999998310000 001367999999999999999999999999999999999954 3468999999998642
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
.+++.++|++|++ .+++..|+.||+.+..... .....++..++++++++.+|+. +..++ .++.||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 4667789999997754211 1123445556789999999996 34454 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998864
No 239
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=347.57 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.1
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeC
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~ 223 (746)
++.+.++++++.| +++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 3468999999887 3467999999999999999999999999999999999965320 2589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004539 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. .+++.++|++|++.++ .+|+.||+.++...+. . ..+..++++++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 42 3467799999999888 4899999998764321 1 2233467888999999865332222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-------
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------- 370 (746)
||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++.+ ++|+|+++|++. ++.+.||++++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 799999999975 4778899999996
Q ss_pred -CCeEEEecCHHHHH
Q 004539 371 -KGSLLYFGKASEAM 384 (746)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998865
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=370.53 Aligned_cols=228 Identities=27% Similarity=0.444 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||+..|... .+...+++||||++.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|.++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999999543 233579999999999999999999999999999999999765431 47999999997631
Q ss_pred ------h-ccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ------~-~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. ..++|+||||++ .|-|-+||.+.+.=...... ..+.++.++++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 236799999997 46777899988876655443 23477888899999999999986654 5689999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 4999999999986 578999999999999999
Q ss_pred EecCHHHHHHH
Q 004539 376 YFGKASEAMAY 386 (746)
Q Consensus 376 ~~G~~~~~~~~ 386 (746)
+.|+++++++-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
No 241
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.2e-40 Score=344.08 Aligned_cols=229 Identities=27% Similarity=0.347 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||++.| +++++|+|+|++|++|++++|+||||||||||+++|+|....++.+|+|.++|+++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHh-ccC--C-CCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHH
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGG 299 (746)
. .++.++|++|++.+++.+|+.+++.+... .+. . .........+.+++.++.+++++ ..+..+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 1 23569999999998888888777654321 110 0 01112233456788899999963 333322 1369999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEec
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~G 378 (746)
|||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999975 35454 8999999999999999
Q ss_pred CHHHHHHHHHhcCC
Q 004539 379 KASEAMAYFSSIGC 392 (746)
Q Consensus 379 ~~~~~~~~f~~~G~ 392 (746)
+++.+ ..++..++
T Consensus 229 ~~~~~-~~~~~~~~ 241 (248)
T PRK09580 229 DFTLV-KQLEEQGY 241 (248)
T ss_pred CHHHH-HHHHhcCC
Confidence 98854 44554443
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-41 Score=346.47 Aligned_cols=215 Identities=31% Similarity=0.509 Sum_probs=174.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. ..++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY--DVDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc--cCCCCEEEECCEEhhhCCHH
Confidence 47899999982 12236999999999999999999999999999999999964 3568999999988642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHc--CCCccccccccCccccCCCH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||+||+.+.... ...... ...+.+.++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999887 6999999875321 111111 11234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999964 8999999999864 54 49999999999999999
Q ss_pred CHHHHHHH
Q 004539 379 KASEAMAY 386 (746)
Q Consensus 379 ~~~~~~~~ 386 (746)
+++++.+.
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
No 243
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=322.30 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+..++++.+|+. ....+|+|+|++|.+||.++++||||||||||||+++|... +..|+|.+||++++.. -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4667888888832 22569999999999999999999999999999999999543 4689999999998632 2
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
..-|.|+|++.|+|.+||.||+.|+.+++ .+.++++.+++.+.+..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 23489999999999999999999999876 47889999999999999999987664 45789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC--CeEEEecCHHHHHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~ 385 (746)
||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+..+ ..-++++++||+. |||+..=+++-..+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999999999876 49999999999875 4557999999985 79998877764333
Q ss_pred H
Q 004539 386 Y 386 (746)
Q Consensus 386 ~ 386 (746)
|
T Consensus 225 ~ 225 (259)
T COG4525 225 Y 225 (259)
T ss_pred h
Confidence 3
No 244
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-40 Score=344.68 Aligned_cols=201 Identities=31% Similarity=0.470 Sum_probs=171.1
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHH
Q 004539 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 252 (746)
|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999964 35689999999987532 2235899999999998999999988
Q ss_pred HHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 004539 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (746)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~ 332 (746)
......+ ...+.+..+++.++++.+||++..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999765 899999999975 57788999999999999998865543
No 245
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.2e-42 Score=434.30 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+.+|+||||+|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 3699999999993 233469999999999999999999999999999999996 4544 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCC
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~L 296 (746)
+.+|++|+|||||+.+|+. ||+|||.... ..++ +.+.++++..++ ++..||.+|+. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3678999999999999975 9999996421 2232 334455554443 56789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+++ |+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 48999999999864 5779999999999999
Q ss_pred EecCHHHHHH
Q 004539 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+|+|+++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=348.37 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (746)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+|+|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 59999999998 235799999999999999999999999999999999995431 1 25899999998863
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004539 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
...++.++|++|++.+++ .||+||+.+..... ... ....++++++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 134677999999998887 49999999875422 111 12335566778887774321111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe---------
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~--------- 370 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 5789999999998
Q ss_pred CCeEEEecCHHHHH
Q 004539 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
No 247
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-40 Score=346.69 Aligned_cols=216 Identities=30% Similarity=0.497 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|+++.|.. ..++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY--DPTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC--CCCCCEEEECCEehhhcCHH
Confidence 468999998821 12357999999999999999999999999999999999954 3568999999988642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHc--CCCccccccccCccccCCCH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||+||+.+..... ..+...+ .+.+.++.+ ++....+ ..++.|||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~ 142 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSG 142 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCH
Confidence 23567999999998886 69999998753211 1111111 122233333 2322222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999987 69999999999764 5 479999999999999999
Q ss_pred CHHHHHHH
Q 004539 379 KASEAMAY 386 (746)
Q Consensus 379 ~~~~~~~~ 386 (746)
+.+++.++
T Consensus 220 ~~~~~~~~ 227 (238)
T cd03249 220 THDELMAQ 227 (238)
T ss_pred CHHHHhhc
Confidence 98887654
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=5.1e-40 Score=344.69 Aligned_cols=218 Identities=25% Similarity=0.423 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL--APDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEEeccccccccc
Confidence 58999999998 2356899999999999999999999999999999999954 3568999999976 4
Q ss_pred Ch----h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 004539 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (746)
Q Consensus 224 ~~----~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 292 (746)
.. . .++.++|++|++. +++.+|+.||+.+..... . .......++++.++++.+|+.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 1 2356999999974 456679999997643211 1 0111234467889999999963 4454 3
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998764 899999999975 56678999999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 249
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.3e-40 Score=350.93 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|. .++..+|+|+|++|++||+++|+||||||||||+++|+|.. + .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~--~-~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc--C-CCcEEEECCEEhhhCCH
Confidence 488999999983 23456999999999999999999999999999999999865 2 47999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccc-------cccCccccCCC
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LS 297 (746)
.+++.++||+|++.+|+. ||+||+.... ..+. +++.+.++.+||.+..+. .+++ ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 457889999999999984 9999996421 1122 345667778887654443 3332 235699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||+|++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999974 45 45999999999999999
Q ss_pred cCHHHHHH
Q 004539 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+++++++
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999874
No 250
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=344.01 Aligned_cols=214 Identities=33% Similarity=0.520 Sum_probs=172.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++|. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY--DPQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCEEEECCEeHHHcCH
Confidence 478999999882 1346999999999999999999999999999999999964 3568999999988742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-------cccccCccccCCC
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+.. ++.. +..++.||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 346779999999988875 999999875321 111 1223333333332221 1121 23357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999753 4 56999999999999999
Q ss_pred cCHHHHHH
Q 004539 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+.++..+
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.1e-40 Score=370.08 Aligned_cols=228 Identities=26% Similarity=0.425 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
..++++||++.|..++. ...+...+++||||++++||++||+|+||||||||.|+|+|.. . +.+|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~-P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-P-PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEEeCcccc
Confidence 35899999999975331 1123467999999999999999999999999999999999854 3 46899999998731
Q ss_pred ------hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
...++++-+||||+ .|.|.+||+++|.-....... ...++.++++.++++.+||+.. ..++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 13567888999987 589999999999987654332 2356677789999999999842 345688999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+.+|++|++|||||+||+..+.+++++|+++.++ |.|.|+||||+. .+...||||++|++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999876 999999999976 578899999999999999
Q ss_pred EecCHHHHH
Q 004539 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888875
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.7e-40 Score=378.32 Aligned_cols=219 Identities=26% Similarity=0.403 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh---
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~--- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. .+ +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~-~~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCCeEEEECCEECCCCCH
Confidence 7899999998 3457999999999999999999999999999999999965 33 258999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.++|.+..+. ..+++|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322111 12233445678899999999765421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999975 5778899999999999999998654
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-40 Score=341.08 Aligned_cols=210 Identities=24% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 59999999988 3457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++.+++ .||+||+.+....+.. . ...++++++++.+++. ...++ .++.||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 34678999999999887 5999999886433211 1 1234577899999995 34443 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe-CCeEEEecCHH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (746)
|+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + +.||++++|+ ++..+.+|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999763 5 5699999995 56777777764
No 254
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.4e-41 Score=317.37 Aligned_cols=212 Identities=32% Similarity=0.500 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+.+++++.+.. ..+...||++|++.|++||.+||+|||||||||||-+++|. . .+++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d-~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-D-DPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-C-CCCCceEEEcCcchhhcCH
Confidence 4788888887632 23456899999999999999999999999999999999994 3 3569999999999752
Q ss_pred ----hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.+ .+++|+|||...|.|+||..||+...+.++.. ......+.+.+.++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 23 47899999999999999999999998877642 233445668889999999876654 567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||. +...|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999998754 999999999986 567799999999999975
No 255
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=351.58 Aligned_cols=224 Identities=24% Similarity=0.429 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++..
T Consensus 45 ~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 45 KLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred eEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996532 1468999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC---------CCc-HHHHHHHHHHHHHHcCCCcccccccc
Q 004539 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN---------TLT-KQQKEKRAIDVINELGLERCQDTMIG 289 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg 289 (746)
..++.++||+|++.+++ .||+||+.++....... ... ....++++.++++.+++.+..+...
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 34578999999998887 59999999875321100 011 2233566888999998854332222
Q ss_pred CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEE-EE
Q 004539 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-IL 368 (746)
Q Consensus 290 ~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i-~v 368 (746)
+..++.|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEE
Confidence 244678999999999999999999999999999999999999999999999976 589999999975 467889997 57
Q ss_pred EeCCeEEEecCHHHHH
Q 004539 369 LGKGSLLYFGKASEAM 384 (746)
Q Consensus 369 L~~G~iv~~G~~~~~~ 384 (746)
|++|++++.|+++++.
T Consensus 273 l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVEYDDTDKIF 288 (305)
T ss_pred ecCCEEEEeCCHHHHH
Confidence 8999999999988764
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=348.08 Aligned_cols=219 Identities=23% Similarity=0.389 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++|. +++.+|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV--RLASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEhHHhhc
Confidence 589999999982 2357999999999999999999999999999999999964 3468999999998754333
Q ss_pred -CcEEEEecCCcCC--CCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 229 -~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+.++|++|++.+. ...+++||+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345678899999998777654 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||+++++ +|++++.|+++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999877999999999975 577889999877 8999999998876
No 257
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6e-40 Score=339.51 Aligned_cols=203 Identities=24% Similarity=0.393 Sum_probs=171.5
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCChh-c-cCcEEEEecCCc--CCCCC
Q 004539 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 244 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~~-~-~~~i~yv~Q~~~--l~~~l 244 (746)
+|+|+|+++++||+++|+||||||||||+|+|+|.. .| +.+|+|.++|+++... . ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 589999999999999999999999999999999964 33 1689999999987532 2 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc---cccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004539 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
|++||+.+...... .......+++.++++.+++++ ..+. .+..|||||||||+|||+|+.+|++|||||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987653221 112334567889999999973 3333 456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999764 899999999976 577889999999999999999988874
No 258
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-40 Score=376.14 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY--QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCCH
Confidence 58999999998 2456999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++||+|++.+++.+||+||+.++............+..+++.++++.+||++..+.. +.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHH
Confidence 24578999999999999999999999864211111123344456788999999998665543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999975 56788999999999999877653
No 259
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.3e-40 Score=338.82 Aligned_cols=209 Identities=30% Similarity=0.546 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+|+++++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCH
Confidence 378999999882 12356999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccccccc------CccccCCCH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||.||+.+.... .. .+.+.+.++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 24567999999998887 6999999874211 11 2345567777888765554321 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+ +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999876 489999999976 34 799999999999998764
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.7e-40 Score=332.19 Aligned_cols=192 Identities=30% Similarity=0.429 Sum_probs=163.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4689999988 2356999999999999999999999999999999999963123468999999998753
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
. .++.++|++|++.+++..|+++++. ...+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~---------------------------------------~~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR---------------------------------------YVNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh---------------------------------------hccccCCHHHHHHH
Confidence 1 2445999999999998888887760 01136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh-ccCEEEEEeCCeEEEecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .||++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 9999999999999999999999999999999999999877899999999976 4555 7999999999999999954 46
Q ss_pred HHHHHhc
Q 004539 384 MAYFSSI 390 (746)
Q Consensus 384 ~~~f~~~ 390 (746)
..+|...
T Consensus 192 ~~~~~~~ 198 (200)
T cd03217 192 ALEIEKK 198 (200)
T ss_pred Hhhhccc
Confidence 6666433
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=375.25 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=182.5
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----hc
Q 004539 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 227 (746)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-----~~ 227 (746)
+|++++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..
T Consensus 2 ~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 2 SNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY--QKDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCEECCCCCHHHHH
Confidence 6888888 3457999999999999999999999999999999999954 3468999999998742 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+||+||+.++............+..++++++++.+++.+..++. +.+|||||||||+||
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA 146 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIA 146 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHH
Confidence 567999999998898999999998764211010112334456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999999888999999999975 57788999999999999999987664
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=341.67 Aligned_cols=221 Identities=25% Similarity=0.447 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC------CEe
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~------G~~ 222 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. . +.+|+|.++ |++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~-~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-E-IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCcCceeEcCEEEECCcc
Confidence 59999999998 4567999999999999999999999999999999999954 3 345555554 455
Q ss_pred CC----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 223 ~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..++.|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998754221 1123445567889999999864211111 124568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||++++|++|+++..|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 699999999975 466889999999999999999
Q ss_pred CHHHHH
Q 004539 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
No 263
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.5e-40 Score=343.18 Aligned_cols=200 Identities=29% Similarity=0.468 Sum_probs=172.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCCHH
Q 004539 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTV~ 247 (746)
+|+|+||++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 8999999998742 3456799999998888789999
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 004539 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-------~p~illLD 320 (746)
||+.+.... ....++..++++++++.+||.+..++. ++.||||||||++|||+|+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999986321 122334456788999999998766654 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999975 477899999999999999999987763
No 264
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=341.84 Aligned_cols=223 Identities=24% Similarity=0.388 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (746)
..|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 359999999998 245799999999999999999999999999999999996532 1 15899999997652
Q ss_pred --------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 --------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..+++.++|++|++.+++. ||+||+.++..... .......++++.+.++.+++.+...... +..+..|
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~L 162 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNL 162 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccC
Confidence 1346779999999999985 99999998753221 1112233456778888887743211111 2345689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 789999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 99988764
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-39 Score=376.08 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC----------
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~---------- 219 (746)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|....++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 3457999999999999999999999999999999999964113458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEecC-CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHH
Q 004539 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (746)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v 271 (746)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3221 0 1235679999997 67888899999999875432 12344556788
Q ss_pred HHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 004539 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (746)
Q Consensus 272 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~ 350 (746)
.++++.+||++..+.. +++|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999998766643 468999999999999999999999999999999999999999999999965 4899999
Q ss_pred EecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004539 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 351 ~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
+||++. .+.+.||++++|++|++++.|+++++...+
T Consensus 225 vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999975 466889999999999999999998876654
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=382.64 Aligned_cols=227 Identities=24% Similarity=0.382 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEEeeccc--c-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004539 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
..|+++||++.|...+. . ....+.+|+||||+|++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~--~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV--ESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCcEEEECCEECC
Confidence 36999999999842100 0 001246999999999999999999999999999999999965 346899999999874
Q ss_pred h-------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCcccc
Q 004539 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 294 (746)
. .++++|+||+|++ .+++.+||.||+.+...... ...+++..+++.++++.+||+ +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58889999999988654321 112344557788999999996 44554 457
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |.|||++|||+. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999775 899999999975 5778999999999999
Q ss_pred EEEecCHHHHH
Q 004539 374 LLYFGKASEAM 384 (746)
Q Consensus 374 iv~~G~~~~~~ 384 (746)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999874
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-40 Score=340.71 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=170.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 47899999882 1356999999999999999999999999999999999954 3568999999988742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.+++.++|++|++.+++ .||+||+.+.... .......+ .+.+.++.+ +...++.+. ..++.|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHH
Confidence 34667999999999886 6999999875321 11111111 122233333 212222222 2357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 9999999999764 4 45999999999999999998
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 7764
No 268
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=310.29 Aligned_cols=216 Identities=31% Similarity=0.522 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++|+++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+ +.+.+|+..+.|...+
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-ll-e~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LL-EMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HH-hCCCCCeEEecccccccccC
Confidence 47899999988 5668999999999999999999999999999999997 44 3456899999886432
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+|+.+|+|+|+..++|++||-|||.-+.. +. ..+++++...++.++++++.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1468899999999999999999999976532 22 246788888899999999999998885 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|||+|||||+.+|++|++||||++|||+-..++++++++|+..|.|-+++||... ...+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999965 356789999999999999999
Q ss_pred CHHH
Q 004539 379 KASE 382 (746)
Q Consensus 379 ~~~~ 382 (746)
+++.
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8754
No 269
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=330.08 Aligned_cols=198 Identities=24% Similarity=0.426 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 2 LEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA--RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred eEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEcccchHH
Confidence 7899999998 2356999999999999999999999999999999999954 356899999999874 23
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||.||+.+...... . ..+++++++++.+||.+..++. ++.||||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 140 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVAL 140 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHH
Confidence 56789999999999999999999998754321 1 2345678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.. +-...+|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999999999998778999999999763 54555677766
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-39 Score=376.29 Aligned_cols=226 Identities=27% Similarity=0.469 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++|..+.. ...+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. + .+|+|+++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccc
Confidence 5999999999831100 0001357999999999999999999999999999999999964 3 58999999988742
Q ss_pred -------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccC
Q 004539 226 -------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 -------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 295 (746)
.++++++||+|++ .+++.+||+||+.++...+.. ..+..+.++++.++++.+||. +..+. .++.
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAE 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCcc
Confidence 1356799999997 478889999999987532211 123344556788999999996 34554 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 47788999999999999
Q ss_pred EEecCHHHHH
Q 004539 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 505 ~~~~~~~~~~ 514 (529)
T PRK15134 505 VEQGDCERVF 514 (529)
T ss_pred EEEcCHHHHh
Confidence 9999998874
No 271
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-39 Score=321.98 Aligned_cols=170 Identities=31% Similarity=0.608 Sum_probs=153.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL--KPDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccchHh
Confidence 4689999988 2346999999999999999999999999999999999954 3468999999998752 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+|++||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999975 56678999999999974
No 272
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2e-39 Score=328.83 Aligned_cols=195 Identities=27% Similarity=0.444 Sum_probs=169.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (746)
|+++||++.| +++.+|+|+|++|++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHH
Confidence 4789999988 3457999999999999999999999999999999999954 356899999998864 24
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||+||+.+.... ..+++++++++.+++++..++. ++.||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 1235678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|++||++. ++...+|+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999998877999999999976 466789999887
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-39 Score=407.45 Aligned_cols=224 Identities=26% Similarity=0.388 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||+++|. ++++.+|+|||+.|++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3599999999982 123679999999999999999999999999999999999653 568999999998852
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|||++|++.+++.+||+||+.+.+.++. .++++.+++++++++.+||.+..|+.+ ++|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 346789999999999999999999998776542 344455667889999999988877654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|+||||||||+|||+.+++.+.+.|++++++|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 688899999999999999999999998
Q ss_pred HHHH
Q 004539 385 AYFS 388 (746)
Q Consensus 385 ~~f~ 388 (746)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=379.66 Aligned_cols=222 Identities=22% Similarity=0.358 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC-----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~----- 223 (746)
.|+++||++.|... .++.++|+||||++++||++||+||||||||||+|+|+|.+. +.+|+|.++|.++
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 69999999998321 123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc---ccc
Q 004539 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQD 285 (746)
Q Consensus 224 --------~~----~~~-~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~ 285 (746)
.. ..+ +.||||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||++ ..+
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 11 122 4799999998 68888999999999865321 2345555678899999999964 233
Q ss_pred ccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccC
Q 004539 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 286 ~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D 364 (746)
..+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++++++ |+|||++||++. .+.+.||
T Consensus 164 -----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~ad 237 (623)
T PRK10261 164 -----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIAD 237 (623)
T ss_pred -----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCC
Confidence 346789999999999999999999999999999999999999999999999865 899999999975 4778999
Q ss_pred EEEEEeCCeEEEecCHHHHH
Q 004539 365 KLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++|++++.|+++++.
T Consensus 238 ri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEEeeCCeecccCCHHHhh
Confidence 99999999999999988764
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.1e-39 Score=372.01 Aligned_cols=224 Identities=23% Similarity=0.413 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++||+++|... ...+++|+|+||++++||+++|+||||||||||+|+|+|.+... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 58999999998310 11357999999999999999999999999999999999965321 258999999998742
Q ss_pred -------hcc-CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 004539 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (746)
Q Consensus 226 -------~~~-~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~ 292 (746)
..+ +++|||+|++. +++.+||+||+.+..... ...+..+..++++++++.+||.+. .++ .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 667789999988654321 123445566788999999999752 343 4
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++. .+.+.||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 276
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-39 Score=329.91 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 11 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 11 LLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVESGQIQIDGKTATRGDR 80 (214)
T ss_pred eEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCCeeEEECCEEccchhh
Confidence 69999999987 3456999999999999999999999999999999999954 3468999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+....+. . ..++.++++++.++|++..++. +..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHHH
Confidence 4569999999999998999999988654321 1 1234567889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+++.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 9999999999999999999999999999999999888999999999975 57889999999863
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=373.78 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. .++.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 5999999998721 12356999999999999999999999999999999999954 33368999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCC--CCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++||+|++ .+++.+||.||+.++....... ...++..+++++++++.+++. +..++. ++.||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998763211110 012334456788999999996 455654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cCHHHH
Q 004539 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987654
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-39 Score=333.59 Aligned_cols=208 Identities=26% Similarity=0.452 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 378999999982 12357999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccc-------ccccCccccCCC
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+..+ +.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 59999997531 111 123455566666544322 222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999865 7899999999753 4 45999999999999988
Q ss_pred cC
Q 004539 378 GK 379 (746)
Q Consensus 378 G~ 379 (746)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.9e-39 Score=370.74 Aligned_cols=223 Identities=26% Similarity=0.447 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC-CEe---C
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~-G~~---~ 223 (746)
..|+++||+++|... ..+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL--EPTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEEecCCccccc
Confidence 369999999998310 012357999999999999999999999999999999999964 3568999996 532 2
Q ss_pred Ch-------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 004539 224 SK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (746)
Q Consensus 224 ~~-------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~ 291 (746)
.. ..+++++||+|++.+++.+||+||+.+..... .+.+..++++.++++.+||.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 11 23567999999999999999999998764321 223334567889999999974 2343
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004539 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999765 899999999975 5778999999999
Q ss_pred CCeEEEecCHHHHHH
Q 004539 371 KGSLLYFGKASEAMA 385 (746)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (746)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999888653
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=322.93 Aligned_cols=220 Identities=25% Similarity=0.457 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
+++++||+++| +++.+|+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 36889999998 5778999999999999999999999999999999999 5653 46899999999985
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+++.++++..-|+..+-..+||+|-+.|+....... ....+++..+++.++.++|++..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 357788999999999988999999999985332222 23456677899999999999888754 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
-||+.|+.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999876 9999999999874 5578899999999999999999998
Q ss_pred HH
Q 004539 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
++
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 64
No 281
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=357.43 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.. ++++|+|.+||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--PPDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--cCCCceEEECCEEccCCC
Confidence 369999999998 5678999999999999999999999999999999999953 356999999999874
Q ss_pred --hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004539 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
+.....|+.|+|+..|+|+|||.|||.++...+. ..-++.....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 1345679999999999999999999998865433 123566777888999999999964466665 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|.|.|||||..+++|||||||||+|+......+.+.+++|.++|.+||++||++. ++++.||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999975 7999999999999999998877
No 282
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-39 Score=337.57 Aligned_cols=202 Identities=25% Similarity=0.464 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV--APDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECC-------c
Confidence 58999999998 2457999999999999999999999999999999999964 34689999987 2
Q ss_pred CcEEEEecCCcCCCC--CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
..++|++|++.+++. .|+.+++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999887765 3788877542 1 111 24567889999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 57788999999965 799999988764
No 283
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.6e-39 Score=324.21 Aligned_cols=194 Identities=25% Similarity=0.393 Sum_probs=165.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHH
Confidence 4689999988 3457999999999999999999999999999999999954 3568999999998642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+||.||+.+...... . .++++.++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999989888999999988654321 1 134577889999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEE
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~v 368 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998779999999999754 34677664
No 284
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.3e-39 Score=332.81 Aligned_cols=202 Identities=26% Similarity=0.373 Sum_probs=168.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
+..+|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY--PPDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEchh----
Confidence 5667777766 4567999999999999999999999999999999999954 3568999999987531
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
..+...+.+.+||+||+.+..... ....++.++++.++++.++|++..++.+ ++||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHH
Confidence 111234456789999999875432 1233445567888999999987777654 5899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998765
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-39 Score=338.67 Aligned_cols=217 Identities=23% Similarity=0.366 Sum_probs=172.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|++++|. ..++.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV--DIFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc--CCCCCeEEECCEEhhhCC
Confidence 3699999999982 12357999999999999999999999999999999999964 3568999999998743
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++||+|++.+++ .|++||+.... ....... ...+.+.++.+ +...++.++ ...+.|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 35678999999998887 59999986421 1111111 11223334443 112223332 24568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++.. +. .||++++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999864 44 49999999999999999
Q ss_pred CHHHHHH
Q 004539 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
No 286
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-39 Score=320.36 Aligned_cols=171 Identities=36% Similarity=0.634 Sum_probs=153.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccchh
Confidence 4689999988 2356999999999999999999999999999999999954 3468999999988642
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999997642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999975 4667899999999985
No 287
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-40 Score=419.24 Aligned_cols=214 Identities=21% Similarity=0.368 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+++|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.|+.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCC
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~L 296 (746)
+.+|++++|||||+.+|+. ||||||.... ..+ ++.+.++++..+| ++..|+.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999985 9999996421 122 2345566666554 45678888853 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++..+ ++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998754 8999999999864 46699999999999999
Q ss_pred ecCHHHHHH
Q 004539 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.4e-39 Score=320.16 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHH
Confidence 47899999882 12246999999999999999999999999999999999954 3568999999997642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 4678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999763 4 569999999999998765
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7e-39 Score=324.60 Aligned_cols=193 Identities=26% Similarity=0.393 Sum_probs=165.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL--NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeeEEECCCccccCHHH
Confidence 7899999998 3457999999999999999999999999999999999954 3568999999988742 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++++..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997765544 35799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++.. .+.+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999987779999999999753 46677654
No 290
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.3e-39 Score=334.01 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++|++++|.. ..++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 36999999999831 11246999999999999999999999999999999999954 3568999999987642
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc--CCCccccccccCccccCCCHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++|++|++.+++ .||+||+.++..........+......+++.++.+ |+.+..+. .++.||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34567999999998886 59999998754211000000111122356778888 66654443 3568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999865 6899999999764 5 45999999999974
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.5e-39 Score=318.08 Aligned_cols=169 Identities=34% Similarity=0.617 Sum_probs=150.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. ..++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL--RPTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc--CCCCCeEEECCEEcccCCHH
Confidence 47899999882 12356999999999999999999999999999999999954 3568999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++++++|++|++.+++ .||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHHHHHH
Confidence 34678999999998887 4999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 67999999999974
No 292
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-38 Score=331.19 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEeecc------------ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccE
Q 004539 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~ 215 (746)
..++++||++.|.... ......+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~--~p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL--SPTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 3688999988886521 01123457999999999999999999999999999999999954 356899
Q ss_pred EEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004539 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 216 I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
|.++|. +++++|++.+.+.+|+.||+.+..... ..+.++..+.++++++.++|.+..+.. ++.
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788877788899999998765332 123444455677888888988766654 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||++||++|+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++. .+.+.||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 567889999999999999
Q ss_pred EecCHHHHHH
Q 004539 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+.+++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
No 293
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.9e-40 Score=378.64 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+|+|+ +++++|+|+|+++++||.+||+||||||||||+++|+|. ++ +.+|+|.+||+++.+
T Consensus 321 ~~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 321 QTLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQ 391 (547)
T ss_pred ceEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCC
Confidence 3699999999993 234699999999999999999999999999999999984 43 468999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCc--cccCCCHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSGGer 301 (746)
.++++++||+||+.+|+. |++|| + + ...++.++++++.+++.+..+. ++. ....||||||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQK 455 (547)
T ss_pred HHHHhhheEEEecChhHHHH-hhccc---c-----C-----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHH
Confidence 568899999999999974 88887 1 1 1233457788899988764432 221 1357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987654 5899999999975 4678999999999999877
No 294
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.1e-39 Score=319.45 Aligned_cols=171 Identities=27% Similarity=0.538 Sum_probs=153.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR--PPASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCccCH
Confidence 58999999864 899999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999984 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999975 57788999999999974
No 295
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.4e-40 Score=381.29 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+|+|+.+. ..++++|+|+|+++++||+++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 4699999999994210 0124699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC-ccccCCCHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGGerq 302 (746)
.++++++||+||+.+|+. |+++|+. + ...+++++++++.+++.+..+....+ .....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8998841 1 12344577888888887644332211 123579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|++|||+|+++|+||+|||||++||+.++..+.+.+. ++..+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45556899999999985 4578999999999999864
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-39 Score=368.82 Aligned_cols=214 Identities=23% Similarity=0.430 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|+++.| +.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 265 ~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 265 VFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD--KRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred EEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--cCCCCeEEECCEECCCCCH
Confidence 69999999754 13899999999999999999999999999999999954 3468999999988742
Q ss_pred --hccCcEEEEecC---CcCCCCCCHHHHHHHHHhcc---CCC--C-CcHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 004539 226 --SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV 293 (746)
Q Consensus 226 --~~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 293 (746)
..++.++||+|+ ..+++.+||+||+.++...+ ... . ......+++++++++.+||. +..++. +
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 407 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-----I 407 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----c
Confidence 235679999998 46888899999998753211 000 0 12223345678999999996 666654 4
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999999878999999999975 5778999999999999
Q ss_pred EEEecCH
Q 004539 374 LLYFGKA 380 (746)
Q Consensus 374 iv~~G~~ 380 (746)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988865
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-38 Score=324.15 Aligned_cols=198 Identities=26% Similarity=0.430 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEeCcchhh
Confidence 48999999998 2356999999999999999999999999999999999954 3468999999987642 25
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+.. ++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHH
Confidence 6789999999988888999999987653321 1 123478899999998655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++.++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999988779999999999753 43 3 88887744
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-38 Score=335.42 Aligned_cols=230 Identities=27% Similarity=0.496 Sum_probs=200.2
Q ss_pred CCceEEEEeEEEEEeeccccc---cccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe
Q 004539 146 LPIYLKFTDVTYKVILKGMTS---SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 222 (746)
.+..++.+||...|..++.-- .....++++||+++++||.++|+|.||||||||-.+|.+ +.. + +|+|.++|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr-L~~-s-~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR-LIP-S-QGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh-hcC-c-CceEEECCcc
Confidence 355799999999998764211 123579999999999999999999999999999999995 432 3 6999999999
Q ss_pred CCh-------hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004539 223 YSK-------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 223 ~~~-------~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
+.. .+|+++-.|||||. |-|.+||.|-|.-+.....| ..+.+++++++.++++++||+.... ++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR----NRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh----hcCC
Confidence 852 36789999999985 88999999999988765543 4788999999999999999975322 4688
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.++ |.+-++++||+. .+..+||+|+||.+|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 999999999999999999999999999999999999999999999999754 899999999976 577899999999999
Q ss_pred eEEEecCHHHHH
Q 004539 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
+||+.|+.+++.
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
No 299
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.3e-39 Score=367.18 Aligned_cols=221 Identities=21% Similarity=0.376 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. .|+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCH
Confidence 5999999987621 12346999999999999999999999999999999999965 33358999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
..+++++||+|+. .+++.+||+||+.++...... ........+++++++++.++|.+ ..++. ++.||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 2457899999995 588889999999876321110 01223344567889999999964 45544 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. ++.+.||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999988
Q ss_pred cCHH
Q 004539 378 GKAS 381 (746)
Q Consensus 378 G~~~ 381 (746)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.2e-39 Score=366.32 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=178.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~--~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL--PLLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCceEEECCcccccCCH
Confidence 48999999998 2346999999999999999999999999999999999964 3568999999976532
Q ss_pred -hccCcEEEEecCCcC--C-C-----CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||++..+.. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234569999998643 1 1 46888887532 12345688999999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++.
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988754
No 301
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-38 Score=325.70 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC--CE--eCC
Q 004539 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~--G~--~~~ 224 (746)
|+++||+++|..+. +.+ .+.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~-~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-L-PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCCeEEEecCCCccchh
Confidence 78999999983210 011 247999999999999999999999999999999999954 3 458999998 42 432
Q ss_pred h-------hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccC
Q 004539 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (746)
Q Consensus 225 ~-------~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~ 295 (746)
. .. ++.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+. .+. .+++
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999998865322 12334445678889999999753 343 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4567899998763
No 302
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-38 Score=322.64 Aligned_cols=198 Identities=21% Similarity=0.402 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL--EAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEhHHCCH
Confidence 589999999982 12247999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++||+|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 59999997531 1121 12333333 2 2 23568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
+|||+|+.+|+++||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-38 Score=317.01 Aligned_cols=177 Identities=32% Similarity=0.576 Sum_probs=151.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh------hccCcEEEEecCC--cC
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~--~l 240 (746)
++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL--RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 457999999999999999999999999999999999964 3468999999998731 2456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 004539 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (746)
Q Consensus 241 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLD 320 (746)
++ .||+||+.+..... ..+.++..++++++++.+||++..++. ++.||||||||++|||+|+.+|++++||
T Consensus 82 ~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54 79999999875422 123444556788999999998766654 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004539 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999974
No 304
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=349.68 Aligned_cols=214 Identities=25% Similarity=0.339 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++||++.|.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl--~P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT--MPNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCceEEEECCEee-----
Confidence 5888999887721 12357999999999999999999999999999999999964 35689999999752
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2233445667789999998754322 123444556678899999998776654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004539 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++++..-|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 577889999999999999999999886544
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5e-38 Score=323.77 Aligned_cols=197 Identities=28% Similarity=0.443 Sum_probs=163.7
Q ss_pred EEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCC--CCCHHHHHHHHHh
Q 004539 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (746)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~ 255 (746)
|++++||+++|+||||||||||+++|+|.. ++.+|+|.+||+++. ..+++++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI--PPAKGTVKVAGASPG-KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCccch-HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999954 346899999999864 34577999999987632 4799999987632
Q ss_pred ccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 004539 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (746)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i 334 (746)
.... ........++++.++++.+++.+..++. +.+||||||||++|||+|+.+|+++||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998766654 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 335 ~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999975 577889999999 89999999988763
No 306
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=361.37 Aligned_cols=214 Identities=23% Similarity=0.432 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~--~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 578888862 3799999999999999999999999999999999964 2458999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC---CCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..+++++||+|++ .+++.+||+||+.+....... ......+.+++++++++.+||. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2356799999996 578889999999875321100 0122334456788999999995 555654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5778999999999999999
Q ss_pred ecCHHHH
Q 004539 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
No 307
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=326.13 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.4
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEecCCcCCCCCC
Q 004539 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lT 245 (746)
=++++..+.-.++||-|+||||||||+|+|+|... +++|.|.+||.-+.+ ..+|+|||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 46778887757999999999999999999999653 468999999986532 24789999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+.||.|+.... ..+..+++++.||++|..+. ++..|||||||||+|+|||+++|++|++|||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985321 33457788999999998885 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||-..+.+++-.|.+|.++ ...|+.+||.+. |+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 789999999965 6899999999999999999999999864
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.8e-38 Score=314.96 Aligned_cols=175 Identities=33% Similarity=0.586 Sum_probs=150.3
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHH
Confidence 478999988 2356999999999999999999999999999999999954 3568999999998742 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++| +++.+|+.+..++ .++.||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456788887 4556677654443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=307.70 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+.++ .+ +.||++||++|++||+.+||||||||||||.++|+|+-....++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 58999999987 34 58999999999999999999999999999999999965334578999999999852
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGer 301 (746)
..|..|...+|.|.=+|..|+.+.|..+...+....-...+..+++++.++.+++++ ..++.+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 356779999999999999999999998875433221113456677889999999987 4555443 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc--CEEEEEeCCeEEEecC
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (746)
||..|+..++.+|++.|||||-||||..+-+.+-+.++++...|.+++++||.. .+.++. |++.+|.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999984 466766 9999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 004539 380 ASEAMAYFSSIGCSP 394 (746)
Q Consensus 380 ~~~~~~~f~~~G~~~ 394 (746)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999865
No 310
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-39 Score=409.99 Aligned_cols=342 Identities=19% Similarity=0.195 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhh
Q 004539 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (746)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (746)
++.++.-.+.++...|.+.+.++||.++.+....+++.+...+......+.....+......... ..-+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fg~~~ 546 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--PVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33345556677788899999999999999887777766433322222221111000000000000 0011123456666
Q ss_pred hhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEee
Q 004539 92 SRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (746)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~ 161 (746)
...+.++.|..+++..+. .|...+..... .+..++.+-+...+...............++++|++|+|+.
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCC
Confidence 666777777776664222 22221111100 01111111111111000000000011235999999999942
Q ss_pred ccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCC
Q 004539 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (746)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~ 241 (746)
..++++|+|+|++|++||.++|+||||||||||+++|.|.. + +.+|.+. .+++.|+||+|++.+|
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~-~~~G~i~--------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 627 -----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-S-HAETSSV--------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred -----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-c-ccCCCEE--------EecCcEEEEcCccccc
Confidence 12467999999999999999999999999999999999854 3 3466552 3567899999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHHHHHhhCC
Q 004539 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 314 (746)
+ .||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|+.. ..||||||||++||||++++|
T Consensus 692 ~-gTIreNI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 692 N-ATVRENILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred c-ccHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCC
Confidence 7 599999999731 2222 223333322 35677889999764 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|++||||||+||++++.++++. ++.+. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999988765 55443 5899999999986 367899999999999999999999874
No 311
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=360.27 Aligned_cols=215 Identities=20% Similarity=0.372 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++ +.+++|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCH
Confidence 578888863 14899999999999999999999999999999999964 3568999999988642
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccC-CCC--CcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.++++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 000 12233345688999999994 556654 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++.++++.|++++++|.|||++|||+. ++.+.||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 5788999999999999999
Q ss_pred ecCHHHH
Q 004539 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
No 312
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.4e-38 Score=317.50 Aligned_cols=194 Identities=27% Similarity=0.447 Sum_probs=152.8
Q ss_pred EEEEeEEEEEeeccccccc--cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
++++||+++|.. +. .+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC-------
Confidence 478999999821 11 136999999999999999999999999999999999954 35689999998
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-------cccccccCccccCCCHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGe 300 (746)
+|+|++|++.+++ .|++||+.+... ...+ ...+.++.+++.+ ..++.+. .....|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999885 699999987532 1111 1222233333221 1222222 2357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||++|||+|+.+|++++|||||+|||+.++..+.+ .++++.++|+|||+++|++.. +.. +|++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 567666668999999999753 544 99999999985
No 313
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=338.26 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|+++.| +...+++|||++|++||+.||+|.||||||||+++|.|. +. +++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999995 44 46999999999874
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
+..+..||+|.|++.|+|++||.|||..+........++.+..+++++++.++.||+-..|..+ .+||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2356789999999999999999999999864322223567778889999999999987667655 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.+. |+.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999975 6889999999999999876654
No 314
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-37 Score=317.12 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=158.4
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 004539 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (746)
.+.|+.|.|. +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM--QTLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCeEEECCcccccccccc
Confidence 4678888872 2357999999999999999999999999999999999964 3458999999987632
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-------cccccCccccC
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 295 (746)
..++.++|++|++.+++ .|++||+.+... ... +...++++.++|.+.. ++.. +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 13467999999998884 799999987531 111 1223445555554322 2222 234678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~--~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|+|+|+++|++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 667666668999999999864 4 5799999999884
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-37 Score=311.00 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=160.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++| +++.+++ +|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM--QPSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 99999999999999999999999999999954 35689999999987543345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++|||+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998864321 0 134567888999997766643 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
|+.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++.. .+.+|-|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999998777779999999999763 35566553
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-37 Score=306.75 Aligned_cols=167 Identities=37% Similarity=0.639 Sum_probs=147.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|.. .+..+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY--DPTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhhhcCHH
Confidence 468999998821 1236999999999999999999999999999999999954 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34677999999998886 5999887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||++. .+.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 799999999976 4555 99999999985
No 317
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.8e-37 Score=356.70 Aligned_cols=214 Identities=22% Similarity=0.325 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++. .+|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEECCCCCH
Confidence 588888872 1599999999999999999999999999999999954 3458999999998742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHH
Q 004539 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGG 299 (746)
..++.|+||+|++ .+++.+|+.||+........+........+++++++++.+||+ +..++. ++.||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999984 4788899999996431111110011222345688999999996 566654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999975 5778999999999999999987
Q ss_pred HHHH
Q 004539 380 ASEA 383 (746)
Q Consensus 380 ~~~~ 383 (746)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7653
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-38 Score=405.11 Aligned_cols=341 Identities=18% Similarity=0.200 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhh
Q 004539 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (746)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (746)
++..+...+.++...|.+.+.+++|.++.+....++..+...+-....++.+............ ..+.+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fg~~~ 546 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNS--IPVLVTVVSFGVFT 546 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3344555666778888999999999999988766666543222111111100000000000000 00011223356666
Q ss_pred hhhcccccchhhhhcc----cccChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEee
Q 004539 92 SRASSASLGLSFSFTG----FTMPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (746)
Q Consensus 92 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~ 161 (746)
...+.++.|..+++.. +..|...+..... .+..++.+-+...+...............++++|++|+|+.
T Consensus 547 ~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~ 626 (1622)
T PLN03130 547 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDS 626 (1622)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccC
Confidence 6666677776655432 2223222211000 01111111111111100000000011235999999999942
Q ss_pred ccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCc-cEEEECCEeCChhccCcEEEEecCCcC
Q 004539 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSLKSKIGFVTQDDVL 240 (746)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~l 240 (746)
..++++|+|+|++|++||+++|+||||||||||+++|.|.. + +.+ |+|.+ +++|+||+|++.+
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~-~~~GG~I~l---------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 627 -----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-P-PRSDASVVI---------RGTVAYVPQVSWI 690 (1622)
T ss_pred -----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-c-cCCCceEEE---------cCeEEEEcCcccc
Confidence 12467999999999999999999999999999999999954 3 457 89975 5579999999999
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004539 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 241 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+ .||+|||.|+.. .++ ++.+++++.. .|+++.+|.+|++. ..|||||||||+||||++++
T Consensus 691 fn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 691 FN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred CC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHHHHHHHHHHhCC
Confidence 97 599999999732 122 2233333333 34677899998764 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 314 PSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+|+|||||||+||++++.++++ .++.+. +|+|+|++||+++ ....||+|++|++|++++.|+++++++
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999998865 566554 5899999999985 467899999999999999999999864
No 319
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3e-37 Score=335.15 Aligned_cols=187 Identities=31% Similarity=0.526 Sum_probs=163.1
Q ss_pred EECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHH
Q 004539 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (746)
Q Consensus 188 IvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 265 (746)
|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+|+++||+||+.|+...+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~--~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE--QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC--CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999954 3568999999998743 24578999999999999999999999986432 23344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 004539 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (746)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~- 344 (746)
+.+++++++++.++|.+..++. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 5566789999999998776654 4689999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 345 g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+|+|++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5788999999999999999999998753
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.9e-37 Score=301.36 Aligned_cols=157 Identities=31% Similarity=0.489 Sum_probs=141.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHH
Confidence 4789999998 2347999999999999999999999999999999999964 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899988 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999965 4667899999999999875
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.7e-37 Score=324.40 Aligned_cols=204 Identities=29% Similarity=0.442 Sum_probs=163.1
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004539 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.+..|+++|+++. .+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~--~p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL--EPSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECC-----
Confidence 3456999999974 246999999999999999999999999999999999964 35689999998
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-------cccccccCccccCCCH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSG 298 (746)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+ ..++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 11 11222333333322 2233332 23468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. +++|||+++|++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999865 5554 48999999999764 4 67999999999999999
Q ss_pred cCHHHHHH
Q 004539 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-39 Score=303.44 Aligned_cols=194 Identities=28% Similarity=0.491 Sum_probs=169.1
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEecCCcCCCC
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~ 243 (746)
.+.++|+|+||++.+||..+|.||||||||||+|+++. +. ++++|.+++.|++++ +.+|.+|+||.|.+.||+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 56789999999999999999999999999999999996 43 456899999999986 3578999999999999986
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004539 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
||++|+.|..+.+..+ .+.+++.+.++++++++..- ++.+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987665321 13456788999999986432 2445689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|+||+.+++.|-++|.++. .+.+.++.+||++.. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 568999999999764 5688999999999876
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=358.97 Aligned_cols=220 Identities=27% Similarity=0.472 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|+++.|... .+.+.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD--KPTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEcCcCCH
Confidence 59999999998311 12357999999999999999999999999999999999964 3568999999998752
Q ss_pred -h----ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004539 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
+ .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+. ++.|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865322 223455667789999999998776654 45899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
+||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|+.
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8765
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8e-37 Score=300.73 Aligned_cols=163 Identities=30% Similarity=0.546 Sum_probs=143.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW--PWGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCC-------c
Confidence 46899999882 1256999999999999999999999999999999999954 346899999873 5
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+++|++|++.++ ..||+||+.+. .++.||||||||++|||+
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999998752 124799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999986 689999999975 34789999999875
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=353.40 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.++|. .
T Consensus 2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~-------~ 64 (530)
T PRK15064 2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL--EPSAGNVSLDPN-------E 64 (530)
T ss_pred EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCC-------C
Confidence 7899999998 3457999999999999999999999999999999999954 345899999873 4
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHh-c-----------cCCCC-----------------CcHHHHHHHHHHHHHHcCC
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELGL 280 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL 280 (746)
.|+|++|++.+++.+||+||+.++.. . ..+.. ....+.++++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999987531 0 00000 0001224568889999999
Q ss_pred CccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004539 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 281 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
++..+. ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||+++|++. .+.
T Consensus 145 ~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~ 216 (530)
T PRK15064 145 PEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN 216 (530)
T ss_pred ChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence 753321 23468999999999999999999999999999999999999999999864 5899999999975 577
Q ss_pred hccCEEEEEeCCeE-EEecCHHHHHH
Q 004539 361 HKFDKLILLGKGSL-LYFGKASEAMA 385 (746)
Q Consensus 361 ~~~D~i~vL~~G~i-v~~G~~~~~~~ 385 (746)
+.||+|++|++|++ ++.|++++.++
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 89999999999999 58999887654
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.6e-38 Score=371.85 Aligned_cols=340 Identities=16% Similarity=0.159 Sum_probs=221.7
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccc--ceecchh
Q 004539 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (746)
.++.++.+++.++..+..+|...+.++|++|+++..+.+++.++.........+................. -..+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999988776655543322111111011111100 0011111
Q ss_pred chhhhhhh-----hcccccchhhh-hccc-------ccChhhhccC------------CCCCCCCCcccccccC----CC
Q 004539 86 SSGAALSR-----ASSASLGLSFS-FTGF-------TMPPDEIADS------------KPFSDDDIPEDIEAGT----RE 136 (746)
Q Consensus 86 ~~g~~~~~-----~~~~~~~~~~~-~~~~-------~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~ 136 (746)
..|..... .+.++.|.... |..+ ..|...+... +.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 22221221 13445454333 2221 1111111100 0000011000000000 00
Q ss_pred C------------CC---CCCCCCCCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHH
Q 004539 137 R------------PK---FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (746)
Q Consensus 137 ~------------~~---~~~~~~~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~ 201 (746)
. +. ..........++++||++.|+ +++++|+|+|+++++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 0 00 000011123599999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC
Q 004539 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 202 ~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (746)
+|+|.. ++.+|+|.+++ +++++||+|++.+++. |++||+.++...... ..+...++++.++++.+++.
T Consensus 497 lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCH
Confidence 999953 34589998864 5679999999999986 999999986421100 00011234567888888887
Q ss_pred cccccccc----CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 282 RCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 282 ~~~~~~vg----~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
+..+...| ......||||||||++|||+|+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|+++.
T Consensus 565 ~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~ 641 (659)
T TIGR00954 565 HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL 641 (659)
T ss_pred HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH
Confidence 65443221 113467999999999999999999999999999999999999999998876 38999999999763
Q ss_pred HHHhccCEEEEEeC
Q 004539 358 RLFHKFDKLILLGK 371 (746)
Q Consensus 358 ~i~~~~D~i~vL~~ 371 (746)
.+.||++++|+.
T Consensus 642 --~~~~d~il~l~~ 653 (659)
T TIGR00954 642 --WKYHEYLLYMDG 653 (659)
T ss_pred --HHhCCEEEEEeC
Confidence 578999999974
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-36 Score=352.27 Aligned_cols=211 Identities=27% Similarity=0.384 Sum_probs=173.5
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~------- 68 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAP------- 68 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------
Confidence 3699999999981 14679999999999999999999999999999999999643 4689999975
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhc---------------cCCC-CCc-----------------HHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPN-TLT-----------------KQQKEKRAIDV 274 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~---------------~~~~-~~~-----------------~~~~~~~v~~~ 274 (746)
...+|||+|++.+++.+||.||+.++... ..+. ... ..+..++++++
T Consensus 69 ~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 69 GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 24699999999999999999999875310 0000 000 00123567888
Q ss_pred HHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 004539 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (746)
Q Consensus 275 l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~ 354 (746)
++.+||++ .+. .+.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 34689999999999999999999999999999999999999999999986 2499999999
Q ss_pred CChHHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004539 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
+. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 75 577889999999999986 889887654
No 328
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-37 Score=308.76 Aligned_cols=216 Identities=28% Similarity=0.484 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+++||+.+| ++|+||+|+|.+|+|||-.+|+|||||||||||++++|. .++.+|.+.+.|++..
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCc
Confidence 469999999998 578999999999999999999999999999999999994 3455899999998863
Q ss_pred --hhccCcEEEEecC--CcCCCCCCHHHHHHHHHh--ccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004539 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 --~~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
.++|++||+|.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|... ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3678999999753 345556788887764322 111111223556778899999999999888654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||-|||||+++|++||||||++|||...+..+.+.|.+++.. +.++|+|||+.. ++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 6889999999999999999
Q ss_pred ecC
Q 004539 377 FGK 379 (746)
Q Consensus 377 ~G~ 379 (746)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=346.98 Aligned_cols=215 Identities=20% Similarity=0.370 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR--EKSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC--cCCccEEEECCEECCCCC
Confidence 369999998752 35999999999999999999999999999999999954 3468999999988742
Q ss_pred ---hccCcEEEEecCC---cCCCCCCHHHHHHHHHh--c-cCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccC
Q 004539 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--L-RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 295 (746)
..++.++|++|++ .+|+.+|+.+|..+... . ...........++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 46888888877433210 0 0000012233456678899999995 34454 4568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCH
Q 004539 376 YFGKA 380 (746)
Q Consensus 376 ~~G~~ 380 (746)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87754
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-36 Score=347.37 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. .+..+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 2356999999999999999999999999999999999943 22258999999986531
Q ss_pred ---hccCcEEEEecCCcCCC--CCCHHHHHHHHHhc--cCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004539 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
..+++++|++|++.++. ..|+++++.++... ....... ...+++++++++.+||.+ ..++. +..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0101112 223457889999999986 56654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHHHh-ccCEEEEEeCCeEE
Q 004539 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv 375 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|. |||++||++. ++.+ .||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999999999987764 6999999975 4555 58999999999987
Q ss_pred Eec
Q 004539 376 YFG 378 (746)
Q Consensus 376 ~~G 378 (746)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.5e-36 Score=307.18 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=159.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-ECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
.+|+||||+|++||+++|+||||||||||+|+|+|.. ++.+|+|. ++|..+ .+.|++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD--APDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--cCCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999954 35689997 777543 13356678899999999
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
+.+...... ...++.. +.+.+.++|++..++.+ +.||||||||++|||+|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 23345567776666544 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhc
Q 004539 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390 (746)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~ 390 (746)
++..+.+.|.+..+ ++|+|+++|++. .+.+.||++++|++|++++.|+.+++.++++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998876544 578999999976 466789999999999999999999998887643
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4e-36 Score=318.07 Aligned_cols=227 Identities=26% Similarity=0.454 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---CccEEEECCEeCC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~- 224 (746)
.|+++|++..+... .+...++++|||+|++||.+||+|.||||||-..+.+.|.+..+. .+|+|.++|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999998543 356789999999999999999999999999999999998775532 4799999999873
Q ss_pred --h-hc---c-CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004539 225 --K-SL---K-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 225 --~-~~---~-~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+ .+ | .+|+++||+|. |.|-.|+.+-|.-..++ ...+++++.++++.++++.+|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 1 22 2 47999999984 67777887777655443 34577888899999999999998755432 468999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++||||+. -+.+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 47788999999999999
Q ss_pred EEecCHHHHH
Q 004539 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988874
No 333
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=346.18 Aligned_cols=203 Identities=23% Similarity=0.377 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~p~~G~i~~~~~------- 381 (530)
T PRK15064 319 ALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL--EPDSGTVKWSEN------- 381 (530)
T ss_pred eEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCc-------
Confidence 69999999998 3456999999999999999999999999999999999954 345899999873
Q ss_pred CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHHHH
Q 004539 229 SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 229 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+.+||++|++. +++.+||+||+.+.. .. ...+++++++++.+|+. +..+.. +..|||||||||+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~ 448 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRML 448 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHH
Confidence 46999999864 566789999986421 11 01235678899999994 455543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++|+++ +.|++++++
T Consensus 449 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 449 FGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999999999886 359999999975 577889999999999998 889887764
Q ss_pred H
Q 004539 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
+
T Consensus 525 ~ 525 (530)
T PRK15064 525 R 525 (530)
T ss_pred H
Confidence 3
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.7e-36 Score=346.35 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|.. ++.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~--~p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD--KEFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecC-------C
Confidence 589999999982 1457999999999999999999999999999999999964 24689999975 2
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhc-cC-----------CCCCcHH---------------------HHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (746)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000010 0123566777
Q ss_pred HHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004539 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 276 ~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 8888853 343 34689999999999999999999999999999999999999999999876 35999999997
Q ss_pred ChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 004539 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (746)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (746)
. .+...||++++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 577889999999999975 7898887654
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-36 Score=307.20 Aligned_cols=194 Identities=26% Similarity=0.440 Sum_probs=165.8
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
.++++|+++.|..+.. .......+++||||+|++||+++|+|+||||||||-|+|.|. .. +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 5899999999975431 111124799999999999999999999999999999999974 43 46899999999864211
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+++..+++.++++.+||.... .++++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHH
Confidence 345667899999999986421 2357899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||++ .+..++|||.+|..|+||+.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 999999999976 4788899999999999999999999863
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-35 Score=310.10 Aligned_cols=189 Identities=25% Similarity=0.310 Sum_probs=154.2
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCC
Q 004539 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 245 (746)
..++|++++++ +||+++|+||||||||||+++|+|.. ++.+|+|.++|. .|+|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~--~p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL--KPDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36677777776 79999999999999999999999954 356899999985 5899999987766789
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+|++.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 122356788999998766654 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE--EecCHHH
Q 004539 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 382 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~ 382 (746)
||+.++..+.+.|++++++ |+|||+++|++. .+...||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999999764 899999999975 566789999999764333 3445544
No 337
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-36 Score=291.12 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-EeCCh-
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~- 225 (746)
..|+++||+.++ +...+|+|+||++.+||+-+|+|||||||||++++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 5667999999999999999999999999999999999953 45689999999 77753
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..|..||--||.|..|+.+||+|||..+.....+- .-...+.+++++++|+..||.+.++...+ .|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hh
Confidence 23567999999999999999999999876432110 01124456789999999999998886653 69
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|-||||++.|++-++.+|++|+||||++|+--+...+.-++|+.++. +++|+++-||+. .+.+++|+|-||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999999999999999999986 789999999975 5889999999999999999
Q ss_pred ecCHHHHH
Q 004539 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.5e-35 Score=340.10 Aligned_cols=205 Identities=22% Similarity=0.374 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE--QPDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCc------
Confidence 369999999998 3457999999999999999999999999999999999954 356899999542
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004539 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..||||+|++ .+++.+||+||+.+...... .... ...+.++++.+|+.+ ..+.. +.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 1111 123457899999964 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~~ 383 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 57788999999986 7876 56665543
No 339
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-36 Score=364.32 Aligned_cols=223 Identities=26% Similarity=0.430 Sum_probs=183.9
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
...|+|+|++.+|. .+...||||||++|+|||.+||+|..|||||||+++|- |+.++ .+|+|.+||.|+.+
T Consensus 1136 ~G~I~f~~~~~RYr------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKI 1207 (1381)
T ss_pred CCeEEEEEeEEEeC------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccc
Confidence 35799999999993 23468999999999999999999999999999999999 56554 58999999999974
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
++|++++.+||||.+|.. |||.||.=.... .++.++++-.+...++.++. ++...|+.+.+. ...+|-||||
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~~--~p~~Ld~~v~eg-G~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVSS--LPGGLDSEVSEG-GENFSVGQRQ 1282 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHhh--CCcCCCceecCC-CccCChHHHH
Confidence 789999999999999985 999999632111 11122233333344445543 345577777543 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
-+++||||+++++||+|||+|++.|+++-..|.+.|++--+ ++|||.+.|+..+ +. .+|||+||++|+++++|+|.+
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHH
Confidence 99999999999999999999999999999999999998543 8999999999886 44 489999999999999999999
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 1360 Ll~ 1362 (1381)
T KOG0054|consen 1360 LLS 1362 (1381)
T ss_pred HHh
Confidence 985
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-36 Score=383.62 Aligned_cols=209 Identities=22% Similarity=0.404 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++|++|.|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--ccCCcEEEECC--------
Confidence 699999999983 12357999999999999999999999999999999999954 34689999987
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH---HHHHcC-CCccccccccCccccCCCHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+|+||+|++.+++ .||+|||.|+.. .+++.. +++.+ +.+.++ +++..+|.+|+. ...||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999886 699999998632 122221 11222 122332 355667888765 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l--~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+||||++.+|++++||||||+||+.++..+.+.+.+. ..+|+|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2348999999999863 45699999999999999999999
Q ss_pred HHH
Q 004539 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.1e-35 Score=337.81 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=167.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~--~p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE--QPDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEECCc------
Confidence 369999999998 3457999999999999999999999999999999999954 356899999542
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004539 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..|||++|++ .+++.+||.||+.++..... .... +.++.++++.+|+.+ ..+.. +..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 47888999999998643211 1111 223557899999964 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~ 382 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.+.||++++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 57788999999987 5876 5566544
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-35 Score=307.29 Aligned_cols=199 Identities=26% Similarity=0.370 Sum_probs=162.8
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 004539 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (746)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+|+|+|.. ++++|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL--KPNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc--CCCCceEeeccccchhhhhccCch
Confidence 5777772 1235999999 59999999999999999999999999964 35689996 88887
Q ss_pred CCh---hcc---CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 223 ~~~---~~~---~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
+.+ ..+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 643 111 247999999888874 8888887642 1223345678999999998766543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++| +|++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 466789999999 466665
Q ss_pred ec
Q 004539 377 FG 378 (746)
Q Consensus 377 ~G 378 (746)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-34 Score=337.00 Aligned_cols=197 Identities=29% Similarity=0.373 Sum_probs=168.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|+++.| ++ ..|+++|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~--~p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL--KPDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEEe--------
Confidence 469999999988 22 2599999999999999999999999999999999964 3568999986
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
..++|++|+..+++.+||+||+.+.... ... ...++++++.++|.+..++. +..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 12467899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...||++++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999764 899999999975 5778899999996 58877776
No 344
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=299.23 Aligned_cols=208 Identities=27% Similarity=0.421 Sum_probs=178.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEe-cCCcCCCCCC
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPHLT 245 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~lT 245 (746)
..+.+||||+|++|++++++|||||||||+||+|+|.+. +.+|.|.++|.+.-+ ++-+++++|+ |.-.+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 358999999999999999999999999999999999654 568999999986532 3446677776 4455655667
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
+.|.+......+ +++.++..++.+.+.+.|+|+...+.+ +|.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 788777654333 467788888999999999998877765 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 004539 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (746)
||..++..|.+.|++..+ .+.||+.+||+.+ ++.++||||++|+.|+++|.|+.+++.+.|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999875 4899999999976 5889999999999999999999999988764
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=338.38 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|.. ++++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL--APVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCC------
Confidence 369999999998 3467999999999999999999999999999999999964 356899999742
Q ss_pred cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHH
Q 004539 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 228 ~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv 304 (746)
.++||++|+. .+.+..|+.+++.-. . .....+++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~----~-----~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL----A-----PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh----C-----chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 0 1123456788999999963 45544 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (746)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999965 577889999999999997 88998876
Q ss_pred HH
Q 004539 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=285.02 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=168.6
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh----ccCcEEEEecCCc--CC
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV--LF 241 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~~~--l~ 241 (746)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++. ....++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 56789999999999999999999999999999999999763 5699999999999742 2345889999985 69
Q ss_pred CCCCHHHHHHHHHhccCCCCCcH---HHHHHHHHHHHHHc--CCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCE
Q 004539 242 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~i 316 (746)
+.||+.||+..+......+.++. ..+.+...+-++.+ ||++..++++| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764322222332 22333344455554 66777777765 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 317 llLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|||-|++|||.++..+++.=.++.++ +.|.+++||.+. +..++-+|.++|++|+||..=
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998755 679999999976 567999999999999999763
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=270.10 Aligned_cols=191 Identities=31% Similarity=0.499 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.+.++||+.+. ++...|.|+|++|.+||++-||||||||||||+..+.|.+... ..+|++++|+++++.
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 46788998654 5678999999999999999999999999999999999976432 368999999998863
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+|++|+.+||+.+||+++|.+||.|+ +|..+..+.++..++..+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 4578999999999999999999999997 45566667788889999999999877664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCC
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvi~~~H~~~ 356 (746)
+-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||..
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999999999999999999887654 445999999999954
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=5.3e-34 Score=274.25 Aligned_cols=144 Identities=33% Similarity=0.564 Sum_probs=130.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++| ++..+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+ +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--EPDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCe-------E
Confidence 4689999988 2346999999999999999999999999999999999954 356899999984 4
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++| ||+||+||++|||+
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999986 479999999975 5667899999999985
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-33 Score=282.90 Aligned_cols=224 Identities=22% Similarity=0.320 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecc----------------ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC
Q 004539 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~ 212 (746)
.++++||++.|.... ........+|+||||++++||.++|+|+||||||||||+|+|.. +|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--~Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--KPT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--CCC
Confidence 578888888876432 01123457999999999999999999999999999999999954 356
Q ss_pred ccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004539 213 GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
+|+|.++|+-.. -+--..| +-|.+|.+||+.+-..+. .+++++.+++++++++--+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~-li~lg~G-------f~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 SGKVKVTGKVAP-LIELGAG-------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred CceEEEcceEeh-hhhcccC-------CCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 999999997421 1111122 345699999999876543 4678899999999999999999998765
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
+..|-||+-|++.|.+...+|+|||+||-.+--|+.-+++-.+.++++.++++|||+++|++. .+.+.||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCC
Confidence 789999999999999999999999999999999999999999999999888899999999975 588999999999999
Q ss_pred eEEEecCHHHHHHHHHhcC
Q 004539 373 SLLYFGKASEAMAYFSSIG 391 (746)
Q Consensus 373 ~iv~~G~~~~~~~~f~~~G 391 (746)
++.+.|++++++++|+...
T Consensus 224 ~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 224 QIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred EEEEcCCHHHHHHHHHHhh
Confidence 9999999999999987643
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-33 Score=333.34 Aligned_cols=205 Identities=26% Similarity=0.454 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|.. ++.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL--QADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEE-CCCc----
Confidence 369999999998 3457999999999999999999999999999999999964 356899998 4332
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHHHH
Q 004539 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.|||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++. ++.|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1234577889999985 345544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-CCeEE-EecCHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 383 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv-~~G~~~~~ 383 (746)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|+ +|+++ |.|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 5778899999998 79985 45776654
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.8e-34 Score=280.77 Aligned_cols=158 Identities=27% Similarity=0.386 Sum_probs=132.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHH
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 247 (746)
..+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999863 379999988732 222445888877
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 004539 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTS 324 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~--p~illLDEPTs 324 (746)
.++++.++|.+. .+. .++.||||||||++|||+|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235677787642 443 3568999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
+||+.++..+.+.|+++.+.|+|||++||++.. + +.||++++|++|+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999999998779999999999753 4 67999999966543
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.3e-33 Score=331.63 Aligned_cols=207 Identities=21% Similarity=0.376 Sum_probs=166.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.|. +++.+|+|+||+|++|++++|+||||||||||||+|+|.+ ++.+|+|.+++
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll--~p~~G~I~~~~------- 570 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL--QPSSGTVFRSA------- 570 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCceEEECC-------
Confidence 4699999999982 2346999999999999999999999999999999999964 35689999875
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+.+|||++|++. +.+++.++.........+. .. .+++.++++.+|+.+ ..+. .+..|||||||||+|
T Consensus 571 ~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 571 KVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred ceeEEEEecccc--ccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 246999999852 3456766644322111111 11 345778999999973 3443 356899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (746)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++|||+. .+...||++++|++|+++ +.|+.++..+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999888765 34 9999999975 577889999999999998 7888876544
Q ss_pred H
Q 004539 386 Y 386 (746)
Q Consensus 386 ~ 386 (746)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=331.51 Aligned_cols=208 Identities=28% Similarity=0.440 Sum_probs=163.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++||+++| +++.+|+||||+|++|++++|+||||||||||||+|+|.. ++++|+|.++|..
T Consensus 2 i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~--~pd~G~I~~~~~~------- 64 (638)
T PRK10636 2 IVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTFPGNW------- 64 (638)
T ss_pred EEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCCC-------
Confidence 7899999998 4567999999999999999999999999999999999954 3568999998842
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHh--------c-----cCC-----------CCCcHHHHHHHHHHHHHHcCCC-ccc
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAAL--------L-----RLP-----------NTLTKQQKEKRAIDVINELGLE-RCQ 284 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~--------~-----~~~-----------~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (746)
.++|++|++..+. .|+.+.+.-... + ... ........+.++.++++.+|+. +..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~ 143 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL 143 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh
Confidence 3889998654432 466554431100 0 000 0000012345788899999996 455
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004539 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
+.. +..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||.. .+.+.||
T Consensus 144 ~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d 214 (638)
T PRK10636 144 ERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVD 214 (638)
T ss_pred cCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcC
Confidence 554 4589999999999999999999999999999999999999999998875 569999999965 5778899
Q ss_pred EEEEEeCCeEE-EecCHHHHH
Q 004539 365 KLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 365 ~i~vL~~G~iv-~~G~~~~~~ 384 (746)
+|++|++|+++ |.|+.++..
T Consensus 215 ~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 215 KIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEEeCCEEEEecCCHHHHH
Confidence 99999999996 678766543
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-33 Score=280.56 Aligned_cols=149 Identities=28% Similarity=0.417 Sum_probs=130.8
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE
Q 004539 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (746)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (746)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL--IPNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC--CCCCcEEEECCEE--------EE
Confidence 5788887 356789885 899999999999999999999999999954 3568999999863 78
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh
Q 004539 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~ 312 (746)
|++|+.. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 313 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
+|++++|||||++||+.++..+.+.|+++++++ +|||+++|++. .+.+.||++++|+++-.++.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~ 153 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYG 153 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccce
Confidence 999999999999999999999999999997765 89999999975 46678999999998766544
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.6e-33 Score=355.03 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999543 5689999998 49999999999975 99999
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
|.|+.... .....+..+....++.++.+ ++..+|.+|.. ...|||||||||+||||++.+|+++||||||+|||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874211 00000000111123333433 44556778765 5679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 330 ~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++.++++. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999984 67765 48999999999864 45699999999999999999998864
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-33 Score=269.11 Aligned_cols=227 Identities=22% Similarity=0.449 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
-++++|+++++.... .-.+....+.+.|||+++.|+.+||+|.||||||||.|+|+|.. ++++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi--~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc--CCCCceEEECCccccccc
Confidence 377888877663221 11123456899999999999999999999999999999999965 3569999999998742
Q ss_pred -hc-cCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHH
Q 004539 226 -SL-KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~~-~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 300 (746)
.. .++|-+++||+. +.|.+.+.+-|....++ ..+++.+++.+++.+.++.+||- +.++ -+++.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchh
Confidence 23 467999999985 67777787777766543 44677888999999999999984 4444 3567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++||||+.+|+|+|.||...+||...+.+++++.-+|.++ |.+-|.++.+.. .+...+|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999764 999999999876 4788999999999999999999
Q ss_pred HHHHHH
Q 004539 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998863
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-33 Score=340.19 Aligned_cols=223 Identities=24% Similarity=0.435 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|||||||||++|+|.|.. ++++|++.++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 35889999998832 122 999999999999999999999999999999999943 4569999999998853
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
+.++.+||+||+|.+++.+|.||++.+.++++ .+++.+..+.++..++.++|.+..|+.+ +.+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 25788999999999999999999999999887 3556667777999999999999999875 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+++|.||+.+|++++|||||+|+||.+++.+.+.++++.+.|+.||+|||-. +|...+|||+.+|.+|++.-.|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999996 46889999999999999999999999
Q ss_pred HHHHHH
Q 004539 383 AMAYFS 388 (746)
Q Consensus 383 ~~~~f~ 388 (746)
+...|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 998875
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.3e-33 Score=325.60 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=161.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|.. ++++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~--~p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV--LLDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEeCCCC------
Confidence 58999999998 3467999999999999999999999999999999999954 3568999998732
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHh-----------c--cCCC------------------CCcHHHHHHHHHHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (746)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665421100 0 0000 00001124568889999
Q ss_pred cCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 278 lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
+|+.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||++|||+.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99963 33 45689999999999999999999999999999999999999999999987 359999999965
Q ss_pred HHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004539 358 RLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
.+.+.||+|++|++|+++ +.|+.++.+
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 477889999999999997 568776543
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=267.58 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.6
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 004539 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++|++++| .++.+|+++|+++++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 67898887 23469999999999999999999999999999999999643 468999999987643 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567999998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|+++.+|++++|||||+|||+.++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998776799999999975 4667789999999875
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-32 Score=332.17 Aligned_cols=207 Identities=25% Similarity=0.404 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|.++++.. ....+.|+|||++|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999843 234459999999999999999999999999999999999663 56899999985
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGe 300 (746)
++||+|++.++. .||||||.|+... . +++.+++++... |+++-.|.||++++ +|||||
T Consensus 584 ---iaYv~Q~pWI~n-gTvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN-GTVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhC-CcHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhH
Confidence 899999999996 5999999998432 2 233334444333 34566788987765 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+++|||+.+|++|++||.|.|++|+++..+|.+..-+-.-++||+|++|||.. ..+.+|+|++|++|+|++.|+.
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999999988665544445899999999864 5788999999999999999999
Q ss_pred HHHH
Q 004539 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+|++
T Consensus 727 ~el~ 730 (1381)
T KOG0054|consen 727 EELL 730 (1381)
T ss_pred HHHH
Confidence 9998
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-32 Score=318.11 Aligned_cols=189 Identities=29% Similarity=0.405 Sum_probs=155.3
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 004539 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (746)
+++++|. .+..+|++++ .+++||+++|+||||||||||+|+|+|.+. +.+|+|. ++|.+
T Consensus 78 ~~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 78 EPVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred CceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChH
Confidence 3666661 2246999999 999999999999999999999999999543 4589998 99988
Q ss_pred CChh---c---cCcEEEEecC----CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004539 223 YSKS---L---KSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 223 ~~~~---~---~~~i~yv~Q~----~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
+... . +.++++++|. +.++. .||+|++... +..++++++++.++|.+..|+.+
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~---- 210 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRDI---- 210 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh----
Confidence 7431 1 2345666664 44443 3999998631 12356889999999987777654
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+...+|+|++|+++
T Consensus 211 -~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 -SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999988 999999999975 577889999999863
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=7.8e-32 Score=341.92 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++ ++|+||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999643 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
||.|+.... .+...+..+...+++.++.+ ++..++.+|. ....|||||||||+|||||+.+|++++|||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999852110 00000111112234445544 3334566654 3567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004539 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
.++..+++.+.....+|+|+|++||++.. .+.||+|++|++|++++.|+++++++
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999753 47799999999999999999998753
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.6e-32 Score=256.99 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe---CC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~---~~- 224 (746)
-++++++|+.| +...--+||||++.|||+.+|+|+|||||||||++|++|+. ++.|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58899999988 44567899999999999999999999999999999999874 568999996532 21
Q ss_pred ----h-h----ccCcEEEEecCCc--CCCCC----CHHHHHH-HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccc
Q 004539 225 ----K-S----LKSKIGFVTQDDV--LFPHL----TVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (746)
Q Consensus 225 ----~-~----~~~~i~yv~Q~~~--l~~~l----TV~E~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 288 (746)
+ + .|..-|+|.|+|. +-... .|.|-+. .+++ .....++.+.++++++.++..+ +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 1 2345799999874 32222 3333332 1111 1233456678899998876432 2
Q ss_pred cCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 004539 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
+..++.+|||++||+.|||.|++.|+++|+||||-|||...+..++++++.+..+ |..++++|||+.- +.-++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 2457899999999999999999999999999999999999999999999999765 8999999999753 445689999
Q ss_pred EEeCCeEEEecCHHHHH
Q 004539 368 LLGKGSLLYFGKASEAM 384 (746)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888775
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-32 Score=260.87 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=160.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++.+|++.. +++..++.++||++.+||++-|.||||||||||||+|+|... +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 456667653 367789999999999999999999999999999999999653 458999999998864 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.+-|+--.+-+=+.+||.|||.|....... ...+.+.+.++.+||....|.++ +.||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 446678888888888899999999998664321 12356788999999999888766 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
||-+++.+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999888888899999999865
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=302.13 Aligned_cols=208 Identities=29% Similarity=0.459 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++|++++| +++++++|+|+++.+|+.++|||+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 58999999998 57889999999999999999999999999999999999653 56899987642
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhcc-------------CCCC--------------CcHHHHHHHHHHHHHHcCCC
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (746)
-+++|++|++.+.+..||.+.+.-+..-. .++. +..-..+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 35999999999999899999887653210 0000 00001135677888888888
Q ss_pred ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh
Q 004539 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (746)
Q Consensus 282 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~ 361 (746)
+. ++.+ .+||||||.||+||++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|+|||| ...+-+
T Consensus 146 ~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 76 5544 589999999999999999999999999999999999999988888854 47 99999999 566788
Q ss_pred ccCEEEEEeCCeE-EEecCHHHH
Q 004539 362 KFDKLILLGKGSL-LYFGKASEA 383 (746)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~~~ 383 (746)
.|++|+-++.|++ .|.|..+.-
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HhhheEEecCCceeEecCCHHHH
Confidence 9999999999976 566765543
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.1e-31 Score=317.47 Aligned_cols=219 Identities=22% Similarity=0.282 Sum_probs=157.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeC--
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~-- 223 (746)
...|+++|++++| +++.+|+|+||+|++|+.+||+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3469999999999 345699999999999999999999999999999999986421 23468887644321
Q ss_pred ---Ch-------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC---------------CcHHHHHHHHH
Q 004539 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---------------LTKQQKEKRAI 272 (746)
Q Consensus 224 ---~~-------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~---------------~~~~~~~~~v~ 272 (746)
+. .+++.++|++|++.+... ++.++.........+.. ......++++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 10 012335666665443221 22222111000000000 00012344566
Q ss_pred HHHHHcCCC-ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 004539 273 DVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (746)
Q Consensus 273 ~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~ 351 (746)
+++..+|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 778888885 33343 34689999999999999999999999999999999999999999999886 6799999
Q ss_pred ecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 004539 352 IHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (746)
Q Consensus 352 ~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (746)
+|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 398 sHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 398 SHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99964 577889999999999996 77876654
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=246.94 Aligned_cols=212 Identities=26% Similarity=0.402 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe--CC--
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS-- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~--~~-- 224 (746)
.|..+||++++.... ..+-.-++|+|+||+++.||++++=||||+|||||||+|-|.. . +++|+|++.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~-~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-L-PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-C-CCCceEEEEeCcchhhhh
Confidence 478899988775321 1122357999999999999999999999999999999999854 3 568999985432 11
Q ss_pred ----h---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004539 225 ----K---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 ----~---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. . .++.||||.|.-...|..+..|.+.-.+.- ...+.+..++++.+++.+|++++....+ .+.++
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 1 1 345699999988778877777766544322 3466777888899999999998766654 35789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||||+|||.|||.++.|-+||+|||||+.||..++.-++++|++-+.+|..+|=+-||- +.-...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999877899999999993 334567899988764
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1e-29 Score=262.59 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=136.1
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHH-HHHHcCCCCCCCccEEEEC------------CEeCCh--hcc-CcE
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL-~~L~G~~~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (746)
.+..+|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 356799999999999999999999999999995 44431 1222110 000000 111 224
Q ss_pred EEEecCCc--CCCCCCHH---HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004539 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 232 ~yv~Q~~~--l~~~lTV~---E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
++..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. .+.+||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 45555443 23444544 3222221111 11112223 56789999975 3443 45789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEe
Q 004539 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (746)
Q Consensus 306 IA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~ 377 (746)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||++. .+ +.||++++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999878999999999975 34 689999999 99999998
Q ss_pred c
Q 004539 378 G 378 (746)
Q Consensus 378 G 378 (746)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 7
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.3e-30 Score=243.70 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=117.9
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCCHHH
Q 004539 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
|+|||+++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999542 468999999999864 35788999999999999999999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTs 324 (746)
| ...++++++++.+++.+..++.++.. ...|||||||||+||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23455888999999988778777543 47899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.4e-29 Score=263.87 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=152.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHH-----cCCCC----C----------CCccEEEECCEeCChhccC-
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~-----G~~~~----~----------~~~G~I~~~G~~~~~~~~~- 229 (746)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+....|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC
Q 004539 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (746)
Q Consensus 230 -----------------------------~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (746)
.+.|..++......+||.|++.|..... ..+++.+.++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2456666655567899999999875431 12456789999999
Q ss_pred Cc-cccccccCccccCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004539 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 281 ~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+ ..+. .+..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2443 3468999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred hHHHhccCEEEEE------eCCeEEEecCH
Q 004539 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (746)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (746)
. .+.||+++.| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 79999999974
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.1e-28 Score=268.12 Aligned_cols=213 Identities=23% Similarity=0.443 Sum_probs=178.1
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++..
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 345788877642 258999999999999999999999999999999993 34568999999998742
Q ss_pred ----hccCcEEEEecC---CcCCCCCCHHHHHHHHHhccCC-C-CCcHHHHHHHHHHHHHHcCCCc-cccccccCccccC
Q 004539 226 ----SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (746)
Q Consensus 226 ----~~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 295 (746)
..+..|+|||.| .-++..++|++|+.++...+.. . -++....++.+++.++.+++.. ..+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 356789999997 4578889999999988332221 1 2556666677889999998852 2223 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||.+|||.|||.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++|.++ +|+..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999996 4789999999999999998
Q ss_pred EecC
Q 004539 376 YFGK 379 (746)
Q Consensus 376 ~~G~ 379 (746)
..=+
T Consensus 481 ~e~~ 484 (500)
T COG1129 481 GELD 484 (500)
T ss_pred EEec
Confidence 7433
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=275.73 Aligned_cols=205 Identities=28% Similarity=0.454 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
...++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34699999999982 23689999999999999999999999999999999999543 44899987532
Q ss_pred ccCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
-++||..|+. .+.+..|+.|++.-.. |. ..+..+...+..++++...- ...++.||||||.||.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3599999986 4557789999987532 11 11566788999999974322 1345689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe-cCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~-G~~~~~~ 384 (746)
+|+.++.+|.+|||||||+.||..+...+.+.|.+.. | |||+||||. ..+-+.|++++.+.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--G-tvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--G-TVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--C-eEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999999998762 4 999999995 458889999999998 65544 8776655
Q ss_pred H
Q 004539 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=5.3e-29 Score=237.86 Aligned_cols=207 Identities=28% Similarity=0.467 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||... +-|-.+|+.+..||++-++|||||||||||-.++|.. +-+|+|.++|.|+..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 3566676543 3478899999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
++.++-+|..|+..-...|.|...+.+. . +..+....++++...++|++..... +..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 5666778998876544458899888754 2 2355667788899999998766543 468999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004539 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 305 ~IA~aL~~-----~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
-+|...+. || ++|+||||.++||...+..+-+.|.+++++|.+||++.||+.. ..+.+|++.+|++|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987753 44 6899999999999999999999999999999999999999875 5688999999999999999
Q ss_pred cCHHHHH
Q 004539 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=4.9e-28 Score=244.85 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.0
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-------CCCccEEEECCEeCCh-hccCcEEEEecCCcCCCCCC
Q 004539 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-------~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lT 245 (746)
+++++++++| +++|+||||||||||+++|+|.... ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 9999999999999999999985421 1123678888876543 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDE 321 (746)
|.. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 02355666665 333343 35689999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3478999999974
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.2e-28 Score=248.86 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=139.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|.. +| +++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++
T Consensus 6 l~l~nfk-~~--------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~ 59 (212)
T cd03274 6 LVLENFK-SY--------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQK 59 (212)
T ss_pred EEEECcc-cC--------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhh
Confidence 5666654 34 45679999987 8999999999999999999972 1 22222122235
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCC-----CCCcHHHHHH--HHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
++++++|+..+++.+|++|++.+....... .....+.... ...++++.++|++..++.+ +.||+||||
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~ 134 (212)
T cd03274 60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKT 134 (212)
T ss_pred hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHH
Confidence 789999999888889999887765432100 0011111000 1245566777877776643 579999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 303 RVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 303 Rv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|++||++++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 5799999999999999999999999999864 67899999995 57789999999975
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.1e-26 Score=238.71 Aligned_cols=186 Identities=16% Similarity=0.313 Sum_probs=131.5
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC---------------CCCCCcc--------EEEECCEe--
Q 004539 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~---------------~~~~~~G--------~I~~~G~~-- 222 (746)
+++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCc
Confidence 3567888887 7899999999999999999998321 11 1234 56666532
Q ss_pred --CC-h--hccCcEEEEecCCcCCC-CCCHHHHHHHHHhccCCCCCcH-HHHHHHHHHHHHHcCCCccccccccCccccC
Q 004539 223 --YS-K--SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 223 --~~-~--~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+. . ..++.++|++|+..+++ ..|..|...+............ ...+.++.+ .+++.+..+. .++.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccc-----cccc
Confidence 11 1 24677999999888876 3577776666554322211000 000112222 2344433333 3468
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
||||||||++|||+|+. +|++++|||||+|||+.++..+++.|+++++ ++|+|+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78889888884 4678999999986
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.9e-26 Score=241.81 Aligned_cols=182 Identities=18% Similarity=0.249 Sum_probs=136.4
Q ss_pred CeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE-eCCh------hccCcEEEEecCC---------cCCCCCCH
Q 004539 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (746)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~-~~~~------~~~~~i~yv~Q~~---------~l~~~lTV 246 (746)
..+++|+||||||||||+++|++.+. +...|++...|. ++-. ..+.++++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 34999999999999999999998653 223568888776 3311 1234799999985 34567899
Q ss_pred HHHHHHHHhccCCCCC-cHHHHHHHHHHHHHHcCCCccccc---------------cccCccccCCCHHHHHHHHHHHHH
Q 004539 247 KETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
.+++..+...+. .. .+....+++.+.++.+|+...... ..-+..+..||||||||++||++|
T Consensus 104 ~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998876432111 01 122334678889999998611000 011234678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 311 I----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 311 ~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+ .+|+++++||||++||+.....+.+.|+++.+ |.|+|++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 57899999999999999999999999999854 89999999994 5778899999875
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=4.1e-26 Score=233.64 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=132.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEe-CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-Ee-CC-
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HP-YS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~-~~- 224 (746)
.|+++|+. +| .+. ++++|... +|++++|+||||||||||+++|++.++.+. .+....+. .. +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47777776 44 121 56666543 589999999999999999999996554322 33333321 01 11
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
...+..|++++|++... .++.+.. .++.++..+.+ .++..++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~--~~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKK--YRVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeE--EEEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 23356699999987431 1221111 12222222111 123333333333 34568999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 305 ~IA~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+||++|+. +|+++||||||++||+.+...+.+.|++++++|+|+|++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877999999999975 4678899999999874
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=8.1e-25 Score=272.96 Aligned_cols=138 Identities=25% Similarity=0.369 Sum_probs=112.2
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHh---hCCC
Q 004539 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (746)
Q Consensus 240 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~---~~p~ 315 (746)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999987542111111233444556 58889999764 4543 4689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCeEEEecCHHHHHH
Q 004539 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (746)
++||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999888999999999975 34 8999999996 789999999998753
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=237.10 Aligned_cols=222 Identities=23% Similarity=0.375 Sum_probs=186.0
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC---
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~--- 223 (746)
...|+++|++..- ..+...+++|||++++||+++|.|-.|-|-+.|+.+|+|.. . +.+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~-~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-K-PASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-c-cCCceEEECCEecccc
Confidence 4579999998752 23357899999999999999999999999999999999953 2 3469999999996
Q ss_pred -Ch--hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC----CCCcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004539 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 224 -~~--~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
+. ..+..++|||+|. -+-+.+|+.||+.+....+.| .-+...+..+.+.+++++++....-.. ...
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cch
Confidence 22 2346799999986 367789999999987543211 125567778889999999988632211 235
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.++++.|+.|++++-++. +++.+||||.||.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 689999999999999999999999999999999999999999999999999999999999975 6999999999999999
Q ss_pred EEEecCHHH
Q 004539 374 LLYFGKASE 382 (746)
Q Consensus 374 iv~~G~~~~ 382 (746)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999888765
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=5e-26 Score=240.78 Aligned_cols=206 Identities=24% Similarity=0.303 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||.|.|.. ..-=+..||++|++||++-|+|.||||||||+++|.|. +. |.+|+|++||+|++.
T Consensus 321 ~~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCC
Confidence 36999999999842 22568899999999999999999999999999999995 44 458999999999973
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
++|+-++-|+-|..+|+.+- .++.. ...+.++..++++.|.+...-.-|+-..-.||.|||||
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 56777888999988887521 11111 12234666777777665433222222334699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
+++-.||+-+-+|+++||=-+.-||.-++.+.+.+-- +.++||||+.+|||-. -|..+||++.+.+|++++.-+
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeeccc
Confidence 9999999999999999999999999999999887765 4567999999999943 588999999999999988753
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=1.8e-25 Score=227.41 Aligned_cols=165 Identities=17% Similarity=0.267 Sum_probs=124.6
Q ss_pred ceEEEEeCCeEEEEECCCCccHHHHHHHHH----cCCCCCCCccEEEECCEeCC-hhccCcEEEEecCC-----cCCCCC
Q 004539 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHL 244 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~----G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~-----~l~~~l 244 (746)
..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 344567788 99999999999999999995 7542 33455542222222 23456799999987 445556
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH------HHHHHHHhhCCCEEE
Q 004539 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLF 318 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~IA~aL~~~p~ill 318 (746)
|+.||+.+. ..+ .+++.+ + ..++.||+||||| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~---------~~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFC---------HQG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeee---------chH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 888888653 111 122222 2 2346899999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 319 LDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 319 LDEPTsgLD~~~~~-~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+||||++||+..+. .+.+.|+++.++ |+|||++||++. ....||+++.|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999776 889999999964 4577999999965
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=5.6e-25 Score=249.35 Aligned_cols=197 Identities=28% Similarity=0.451 Sum_probs=156.8
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
...++++|++..- ...+..|++.++.++|||.+.|.||||||||||+|+|+|. . |--+|+|..-
T Consensus 390 ~~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P------- 453 (604)
T COG4178 390 DHGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP------- 453 (604)
T ss_pred cceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------
Confidence 3579999999864 2345899999999999999999999999999999999995 4 2335777543
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC-ccccCCCHHHHHHHH
Q 004539 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGGerqRv~ 305 (746)
....+-|+||.|.+... |.||-|.|.... .. ..++.+.++|.++||++..+..-+. +.-+.||+||||||+
T Consensus 454 ~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRla 525 (604)
T COG4178 454 ADSALLFLPQRPYLPQG-TLREALCYPNAA---PD----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525 (604)
T ss_pred CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CC----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHH
Confidence 12458899999998765 999999986321 11 3345678899999998876653221 234569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+||.|+++|++++|||.||+||+.++..+++.|++-. .+.|||-+.|++. +....++.+-+.
T Consensus 526 fARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999998743 3899999999975 456666655543
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=8.2e-24 Score=254.48 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 004539 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p---~illL 319 (746)
+||.|++.|...+. + ..+..+.++.+||.+ ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865421 1 123467899999975 2343 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004539 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
||||+|||+.....+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++.+
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998789999999999753 4679999999 6899999999998753
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.3e-24 Score=211.41 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=175.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC--CCccEEEECCEeCC---
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS--- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~--- 224 (746)
+.++|++..+.. +.+...+++++|++++.||+-+++|.||||||-..|+|+|...+. .+.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 567777777643 345668999999999999999999999999999999999965431 12234456666542
Q ss_pred h-hc----cCcEEEEecCCcC--CCCCCHHHHHHHHHhccCCC-CCc--HHHHHHHHHHHHHHcCCCccccccccCcccc
Q 004539 225 K-SL----KSKIGFVTQDDVL--FPHLTVKETLTYAALLRLPN-TLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~-~~----~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~~~~~~-~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
. +. -+.|++++|+|.- -|.-+|...|.-......-+ ..+ -..++.++-+++.++|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 1 22 2458899999863 33333433322111111001 111 134567788999999999877743 46788
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|.-||-|+|.||.|++.+|++||.||||+++||.++.+|.++|.++.+ +|.||++++||.. .+.+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 4899999999976 4788999999999999
Q ss_pred EEEecCHHHHHH
Q 004539 374 LLYFGKASEAMA 385 (746)
Q Consensus 374 iv~~G~~~~~~~ 385 (746)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.2e-23 Score=247.95 Aligned_cols=125 Identities=27% Similarity=0.453 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhh---CCCEEE
Q 004539 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~---~p~ill 318 (746)
.+||.|.+.|...+. ...+..++++.+||... .+. ..++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777764321 01234578889999752 333 346899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHH
Q 004539 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 383 (746)
|||||+|||+.....+++.|+++.++|.|||+++|++.. .+.||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4679999999 79999999998875
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=8.8e-24 Score=231.91 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=145.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..+.++|+++++ .++.+++|+++++++|+.++|+|+|||||||+|++|.|+..+.+.+=.++.-.+.+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 468999999987 567899999999999999999999999999999999998653232222332222221110
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHh-c----------------cCCCCCcHHHHHHHHHHHHHHcCCC-cccccccc
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL-L----------------RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIG 289 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 289 (746)
..-+-+|.+. .-..+.-+.+-.. + .....+..+..+.++.+++..+|.. +..+.
T Consensus 146 ~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k--- 217 (614)
T KOG0927|consen 146 KQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK--- 217 (614)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH---
Confidence 0111111100 0001111111000 0 0001122333445566667666543 33333
Q ss_pred CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 290 ~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
.+.++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+..+ + ++|+++|.- ..+-..|.+|+-|
T Consensus 218 --~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l 292 (614)
T KOG0927|consen 218 --KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHL 292 (614)
T ss_pred --HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhhee
Confidence 4568999999999999999999999999999999999999888888876532 2 899999984 4577889999999
Q ss_pred eCCe-EEEecCHHHHH
Q 004539 370 GKGS-LLYFGKASEAM 384 (746)
Q Consensus 370 ~~G~-iv~~G~~~~~~ 384 (746)
++++ +.|.|+.++.+
T Consensus 293 ~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQYV 308 (614)
T ss_pred cccceeeecCCHHHHh
Confidence 9998 67778877644
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=6e-24 Score=233.21 Aligned_cols=203 Identities=22% Similarity=0.351 Sum_probs=157.2
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
++.+.++||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.-
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~------ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS------ 451 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc------
Confidence 45799999999983 22379999999999999999999999999999999999654 4578775432
Q ss_pred ccCcEEEEecC--CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004539 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 227 ~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++++-.|+ +.+--+.++-|++.=.. ++....+.+..++.++||....++ ...+.||+|||+||
T Consensus 452 -H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 452 -HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred -cccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 2334555554 23333467777765321 113345668889999999854443 24578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHH
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 381 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~ 381 (746)
..|+.++..|.+|+|||||+|||..+...+-+.|.+.- | +||+++||.. -+-+.+++|.+..+|.+ .+.|...
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--G-gvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--G-GVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--C-ceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999999999999999999888752 3 8999999965 47788999999988754 5666643
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.4e-22 Score=203.56 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=121.1
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE--CCEeCCh-----hccCcEEEEecCCcCCCCCC
Q 004539 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~--~G~~~~~-----~~~~~i~yv~Q~~~l~~~lT 245 (746)
++++++.+.+| +++|+||||||||||+.+|..-+ .|+... .|..... .....|.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46778888887 88999999999999999997422 122111 1221111 11345888888776554
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 004539 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL----~~~p~illLDE 321 (746)
| ... ...+++++++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 83 ---~-----------~~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 011 1123556677766 444444 3468999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004539 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~---g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
||+|||+.+...+.+.|+++.++ ++|||+++|++.. +.+ +|+|-+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 99999999999999999998653 3689999999764 544 59999998753
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=6.8e-22 Score=218.55 Aligned_cols=204 Identities=21% Similarity=0.343 Sum_probs=157.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++|++|+..- +..+..+++|+|++|+.|+-+.|.||||||||+|+|+|+|. . |..+|.+.--.+..
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~---- 499 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGG---- 499 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCC----
Confidence 479999999864 33355788899999999999999999999999999999984 4 34578886543321
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccccccc------CccccCCCHHHH
Q 004539 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGER 301 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSGGer 301 (746)
-+.+-||||.|.+--. |.||-+.|...--.+ ..+...++++.+.|+.++|.|..+..-| -.....||+||+
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 1458899999987654 999999987321111 1122334567777777777765543211 112346999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-+.|+.+ +.+.-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999998886 4999999999976 5666688888875
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1e-21 Score=211.62 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=136.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHH
Q 004539 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 251 (746)
-|+-=.++|..||+++++||||-||||+.++|+|.+. +++|+ .. .-+|+|=||--.--...||++-|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 4555556777889999999999999999999999653 45676 11 234888888533223579999887
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 004539 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (746)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~ 331 (746)
-....+... .-...++++-|+|++..+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 654322111 122357788899988888665 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004539 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
..+-+.|+++... ++|.+++-||..- +--++||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 7899999999753 444578888775
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=3.6e-22 Score=209.10 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=117.6
Q ss_pred eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-C-Ch---------hccCcEEEEecCCcC-CCCCCHHHHHH
Q 004539 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-SK---------SLKSKIGFVTQDDVL-FPHLTVKETLT 251 (746)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yv~Q~~~l-~~~lTV~E~l~ 251 (746)
.+++|+|||||||||||++|++.+. + ..|++..++.. + .. ...-.+.|..|++.. .-..++++...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 3999999999999999999998553 2 24665543321 0 00 111123444444321 00112222110
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccc---------cccCc--------cccCCCHHHHHHHHHHHHHhhC-
Q 004539 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGGS--------FVRGVSGGERKRVCIGNEIIIN- 313 (746)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSGGerqRv~IA~aL~~~- 313 (746)
..+.... ....+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 101 ---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 ---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 0011110 1123345688888888633211 11111 2368999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 314 ---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 314 ---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+++||||||+|||+..+..+.+.|++++++|.|||++||++ ++.+.||++++|.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999994 46788999999874
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.86 E-value=3.7e-21 Score=188.55 Aligned_cols=209 Identities=23% Similarity=0.305 Sum_probs=158.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|++.++.|+|+ ...+++-|+|++++.|..+.++|.||||||||||+|+|.-. ...|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~-------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEecc-------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 3699999999994 23489999999999999999999999999999999999432 335899999986421
Q ss_pred -------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004539 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
++.+.+++-- +-.+-.++++.+.| |+.. .... +|-+++++.|.+.- +. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl-~W------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDL-RW------R 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccc-eE------E
Confidence 2333333333 22223346765544 4432 1122 23345666666542 12 2
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
.+.+|-|||+||.|++.|++.=++|+|||-|-.||..++.++++.|++-.+ +|.||+..||-... +.....+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 357999999999999999999999999999999999999999999999875 48999999998654 6677899999999
Q ss_pred CeEEEecCHHHHH
Q 004539 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|+++..-+.+++.
T Consensus 224 Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 224 GKLVDNLKYQKIK 236 (291)
T ss_pred Ceeeeccccchhh
Confidence 9999866555544
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.6e-22 Score=218.27 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=142.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
.+|...|++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| ++-++.++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888888 57889999999999999999999999999999999984 222 222332232
Q ss_pred cCcEEEEecC-CcCCCCCCHHHHHHHHHhccCCCCCcHH-HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+. .+++-. +.+-.+.++.+-+.--. .+... ..++...++|..+|..+.... ...+.||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 22 122221 12222323332222110 11111 223334448888988754432 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHHHHH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~~ 384 (746)
+||||..+|+||+|||||+.||..+..=+.+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|+.++..
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999999999999988888888764 4799999999 5556677888887777555 4566655543
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.1e-20 Score=201.68 Aligned_cols=193 Identities=26% Similarity=0.400 Sum_probs=150.2
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004539 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.|+.|-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|.+. | ..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P-~~GE~RK------- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-P-NDGELRK------- 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-C-Ccchhhc-------
Confidence 356799999999983 56789999999999999999999999999999999999764 3 4676532
Q ss_pred hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004539 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 ~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 2345699988874 35555677777654321 222 2345678889999888885 367899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
|++|.--+..|+||||||||++||.++...+-+.|++.. -.||+++||-.. +.+.--.+.|+.+-
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEecccce-eeecCceEEEEccC
Confidence 999999999999999999999999999999999988763 379999999553 33333355665543
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=2.1e-20 Score=191.35 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.6
Q ss_pred cccCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCCChHHHhccC-
Q 004539 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~Tvi~~~H~~~~~i~~~~D- 364 (746)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 3568999999998877554 5799999999999999999999999999999776 5 589999999754 446665
Q ss_pred -EEEEEeCCe
Q 004539 365 -KLILLGKGS 373 (746)
Q Consensus 365 -~i~vL~~G~ 373 (746)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 888888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7.1e-20 Score=200.41 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=157.0
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004539 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.++.+++.+|+|.|.. ++-+++.+++..++.-+..+++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCC------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 3557999999998831 12279999999999999999999999999999999998553 3467776553
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004539 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
|.+|+|-.|...=+-.+.|.+- .+...++ |. .++ +.++.-+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-KTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-CCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 5679999997543333455443 3333332 22 233 3455678899997422 12235789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE-ecCH
Q 004539 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 380 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~-~G~~ 380 (746)
+|.....+|.+|+|||||+.||-.+-..+.+.|+++. | .||++||+. +.+-..|+.+.+.++|++.- .|..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999999998762 3 799999995 45778899999999999864 3444
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=6.2e-20 Score=186.14 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=109.8
Q ss_pred ceeceEEEEeCCe-EEEEECCCCccHHHHHHHHH-cCCCCCCCcc-EEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004539 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLL~~L~-G~~~~~~~~G-~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
-.-++|+++.+|+ +++|.||||||||||||+|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 4568999999995 89999999999999999998 2110 0011 00000 001233444431111
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
+.++..+. ....+|+|||||+.|+++ +.+|+++++||||+|||+
T Consensus 80 ------------------------------g~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 11111111 124699999999999987 489999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004539 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
.....+. ..++++.+.|.|+|++||+. ++.+.||++++|++|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 46788877789999999983 577899999999999998874
No 399
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.82 E-value=1.7e-21 Score=196.05 Aligned_cols=206 Identities=28% Similarity=0.549 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004539 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (746)
Q Consensus 491 ~Q~~~L~~R~~~~-~R~~~~~-~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (746)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+++ ++.++. ++.|++++.+...++............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999985 6888666 7889999999999999999886 344455 7788888877776655544455778899
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004539 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 648 (746)
Q Consensus 569 R~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~ 648 (746)
|..+.||+.++.|++.+|++|+.+.+++..++..+++.++.|++.|++.+ +|+.+++.++++.+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 6777778888888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 004539 649 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 700 (746)
Q Consensus 649 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef 700 (746)
+.+.+..+.+++..++++++|.+.| .+|+|++|+.|+||.+|++|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998 799999999999999999999998876
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=5.9e-19 Score=175.75 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 296 LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999975
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=195.27 Aligned_cols=170 Identities=31% Similarity=0.486 Sum_probs=127.0
Q ss_pred EEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-------------CChhcc----C--cEEEEec---
Q 004539 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-------------YSKSLK----S--KIGFVTQ--- 236 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-------------~~~~~~----~--~i~yv~Q--- 236 (746)
..++|++++|+||||-||||-+|+|+|.+. |. =|+ .++.| +...++ . ++..=+|
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 457999999999999999999999999764 33 232 22221 100010 1 1222233
Q ss_pred -CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004539 237 -DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 237 -~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
-|..+. -||.|-|.-. ...-..+++++.++|.+..|..+ +.|||||-||++||.+++++++
T Consensus 172 ~iPk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 233343 3677765421 11235788999999998888654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++++|||||-||...+...-+.++++++.+++||++-||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999753 4446788888864
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.78 E-value=3.1e-19 Score=180.87 Aligned_cols=136 Identities=19% Similarity=0.258 Sum_probs=102.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~-----~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS-----SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC-----ccCcccceEEEeccchh
Confidence 346788887765 79999999999999999999998431 12344444221 36778888899999999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
|+.++.. .... ..+++.++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~~-e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYA-ELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHH-HHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 1122 22556777776642 79999999999999999
Q ss_pred HHHHHHHH-HHHHHHHCCCEEEEEecCCC
Q 004539 329 TTALRIVQ-MLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 329 ~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.....+.. .++++.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 99987754 68888777899999999975
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=3.4e-18 Score=214.23 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=145.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHH-c----CCCC--CCCccEEEECCEeCCh--------------hcc-
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLK- 228 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~-G----~~~~--~~~~G~I~~~G~~~~~--------------~~~- 228 (746)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|..|+.. ..|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3489999999999999999999999999997433 1 1100 0123447777666521 000
Q ss_pred ---------------CcE---------------EEEecCCcCCC--------------------------------CCCH
Q 004539 229 ---------------SKI---------------GFVTQDDVLFP--------------------------------HLTV 246 (746)
Q Consensus 229 ---------------~~i---------------~yv~Q~~~l~~--------------------------------~lTV 246 (746)
.+. |++.=+-.++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 001 11111111111 3677
Q ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 004539 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 323 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---p~illLDEPT 323 (746)
.|.+.|... ..+-.+.-+.|.++||.... +| +...+|||||.||+-||.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 776666421 11234456788889997532 33 44567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004539 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
+||++.....+++.|++|.+.|.|||++.|++ ++.+.||.|+=| +.|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999996 467889999999 3479999999999864
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.1e-18 Score=195.90 Aligned_cols=128 Identities=28% Similarity=0.484 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 004539 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p---~illL 319 (746)
.|||.|...|... . ..-.+..+.|.++||.-. .+| +...+|||||.|||-+|.+|.++. -+++|
T Consensus 783 ~MTveEA~~FF~~------~---p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEA------I---PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhc------c---hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 3667776666532 1 123345567788888643 233 445689999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004539 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
||||+||-.....++++.|.+|.+.|.|||+|-|.+. +.+.||.|+=| +.|+|+..|+|+|+.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 68999999998 4579999999999875
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=5.9e-19 Score=181.83 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=116.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEecCCcCCCCCCHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 247 (746)
.+.+.+|++++.++|++++|.||||+|||||++.++- . .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-I------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-H------------------HHHHHhCCCcCcccEEEe-----
Confidence 4568999999999999999999999999999999972 1 1122333 5555432221
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 004539 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL--~~~p~illLDEP--- 322 (746)
.+++++..+++++.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 122344555665432 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004539 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3344443 48899999996 46789999999999999987764
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.4e-18 Score=183.22 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 468899999998
Q ss_pred CCe
Q 004539 371 KGS 373 (746)
Q Consensus 371 ~G~ 373 (746)
+|+
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=190.68 Aligned_cols=188 Identities=22% Similarity=0.368 Sum_probs=136.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004539 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|.++||-.-. + ....+...+||.|++|--+.|.||||||||+|.++|+|. . |...|.... ...
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~-------P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI-------PRP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec-------CCC
Confidence 36777775432 2 334689999999999999999999999999999999994 4 333343321 123
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhcc--CCCCCcHHHHHHHHHHHHHHcCCCccccccccC----ccccCCCHHHHH
Q 004539 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSGGerq 302 (746)
.++-|+||.|..- .-|.||.+.|..... ..+..+ ++..+.+++.+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888877642100 001111 23345566666666554433321 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 004539 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (746)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-++|+|+ +++.
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKY 674 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHH
Confidence 99999999999999999999999999999999988875 4999999999997 4554
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.76 E-value=2.1e-18 Score=184.08 Aligned_cols=185 Identities=26% Similarity=0.430 Sum_probs=139.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC------CCCccEEEECCEeCChhccCcEEEEecCC-cCC
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLF 241 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~------~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~ 241 (746)
+..+|+|+|++++||++++|+|+|||||||||++|+|.... .+++|.|.+--.. ..+.+|-+. .-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccccccc
Confidence 45799999999999999999999999999999999984321 1356776653221 123444432 223
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004539 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
..-|+.|.+.- .+.+ -..+.+++++.||.+-. .-....++||-|||.|..||.++...|.+++.||
T Consensus 468 ~~~tilehl~s-----~tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 35577776642 1111 12356889999997532 2223457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhc-cCEEEEEeCCeEE
Q 004539 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv 375 (746)
--+.||+.++..+.+-|.+++++ |.|++++||+|.- +-.+ -|+++++.=|.+.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999865 9999999999752 3334 4898888766543
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=1.2e-17 Score=163.71 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+||+||+||++||++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998666889999999964 467799999996
Q ss_pred C
Q 004539 371 K 371 (746)
Q Consensus 371 ~ 371 (746)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.5e-17 Score=197.15 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhccCCCCCcH------HHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004539 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
.|||.|.+.|...+..+..... .+..+++ +.+..+||.+. .+ +.+.+|||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 5899999998765432211000 0111122 34667787643 34 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHH
Q 004539 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (746)
+++||||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999975 34 689999999 899999999998874
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=3.8e-17 Score=197.23 Aligned_cols=135 Identities=23% Similarity=0.417 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHhccCCCC---Cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004539 243 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
.+||.|.+.|...+..+.. +. -.+..++++ .++.+||.+. .|+. +.+|||||||||.||++|..+|
T Consensus 436 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~~~ 509 (943)
T PRK00349 436 ELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSGLT 509 (943)
T ss_pred cCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhCCC
Confidence 5899999998544322210 00 012233443 6788888754 4544 4689999999999999999997
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004539 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
++++|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 510 ~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 510 GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999763 4 569999999 8999999999988743
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.7e-16 Score=166.89 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.2
Q ss_pred ccCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 004539 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (746)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999865 334 55555433 345556
Q ss_pred ---CEEEEEeCCeE
Q 004539 364 ---DKLILLGKGSL 374 (746)
Q Consensus 364 ---D~i~vL~~G~i 374 (746)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9e-18 Score=179.61 Aligned_cols=215 Identities=26% Similarity=0.365 Sum_probs=149.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|.++|.+.+- ..+.++.|.|++|-.|..++++||||-||||||+-|+.|-..-+..=+|++..+.+-.
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 358888877654 4567999999999999999999999999999999999875432223455555443310
Q ss_pred ------hc---cCcEEEEecCCcC-----CCCCCHHHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC
Q 004539 226 ------SL---KSKIGFVTQDDVL-----FPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (746)
Q Consensus 226 ------~~---~~~i~yv~Q~~~l-----~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 290 (746)
-+ .++...+..++.| -...|+.|-+.-.+ .++. +.....++++..+|.-||.+.....
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~---- 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE---- 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc----
Confidence 00 1111221111111 12346666554322 2221 1122345567788888888754432
Q ss_pred ccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+....+|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-+ .+-..|..|+-|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 3345799999999999999999999999999999999988877777777764 59999999965 4778899999999
Q ss_pred CCeEE-EecCHH
Q 004539 371 KGSLL-YFGKAS 381 (746)
Q Consensus 371 ~G~iv-~~G~~~ 381 (746)
+-++- |.|...
T Consensus 484 ~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 484 NQKLHYYRGNYT 495 (807)
T ss_pred hhhhhhhcchHH
Confidence 87764 456543
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=1.8e-16 Score=161.04 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=103.8
Q ss_pred eEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHh
Q 004539 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (746)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 255 (746)
.++++.+|++++|+|||||||||||++|++.... ...|.. . ...+..+++..|.. ..+...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~-~~~~~~i~~~dqi~---~~~~~~d~i----- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------V-PAESASIPLVDRIF---TRIGAEDSI----- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------c-cccccccCCcCEEE---EEecCcccc-----
Confidence 3445558999999999999999999999953211 112211 1 01122344433321 111111110
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 004539 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335 (746)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~ 335 (746)
+. ....++++++ |++.+.+++.+|+++++||||+|||+.....+.
T Consensus 86 -----------------------------~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------SD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------cC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 00 1134565555 577778889999999999999999999888876
Q ss_pred H-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 336 Q-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 336 ~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4666766789999999985 4677899999999999998886544
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=6.3e-16 Score=157.25 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=98.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEecCCcCCCCCCHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 247 (746)
++.+.+|+++++++|++++|+||||+|||||++++++.. ...++| +| |..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------------HHHHcCCCc---chhhcCccCh
Confidence 457999999999999999999999999999999998732 111222 33 3334456666
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 004539 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD 327 (746)
|+|... ++..+..+. ....+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 666422 122211111 124689999865 55667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEecCCC
Q 004539 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9876655 4567777777999999999853
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.61 E-value=2.1e-15 Score=154.92 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=110.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+.+|++++.++ ++++|.||||+|||||||.+++...- |+ .|.++.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999987 99999999999999999999863221 21 1222221 2356777765 567778877
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---C
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 323 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~p~illLDEP---T 323 (746)
++..+. |. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 765431 11 133444444444679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+++|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+++|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887652 23344555555 88999999995 577888988888899988877666543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=156.10 Aligned_cols=178 Identities=25% Similarity=0.367 Sum_probs=134.0
Q ss_pred cccceeceEEEEeCCe-----EEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCC
Q 004539 169 EKDILNGITGSVNPGE-----VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge-----~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 243 (746)
.+.-+.+..+.|+.|+ ++..+|.||.|||||+++++|++. |...|+|-. -.++|=||.-.-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 4456778888888874 789999999999999999999764 444455432 246777876433234
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004539 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
-|||+.+.--.+. .-....-+.++++-|.+++..|..+ .+|||||.|||+||..|=+.+++.+.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5899876532110 0112245678888888887777554 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+-||++.+..--+.+++.. +.++|-.++-||.--+. -++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999999888888864 45889999999965433 3578887764
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.56 E-value=1e-14 Score=154.16 Aligned_cols=139 Identities=20% Similarity=0.265 Sum_probs=95.5
Q ss_pred eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC
Q 004539 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (746)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 258 (746)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|++. .+.++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 5789999999999999999998653 45899999999874 234456778888653 34455544311
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 004539 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (746)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 338 (746)
+. .|. ..+++ ..+|+++++|||++ ...+...+
T Consensus 182 -----k~--------------------------------~~~---~~~i~--~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KA--------------------------------EGM---MMLIR--SMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HH--------------------------------HHH---HHHHH--hCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 011 12223 35999999999974 33444555
Q ss_pred HHHHHCCCEEEEEecCCChHHH------------hccCEEEEEeCCeEEEecCHHHH
Q 004539 339 QDIAEAGKTVVTTIHQPSSRLF------------HKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 339 ~~l~~~g~Tvi~~~H~~~~~i~------------~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.+ +.|+|+|+++|++..+-. ..|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 369999999998543222 5689999999887 66666544
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.46 E-value=1e-12 Score=145.13 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc--
Q 004539 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-- 362 (746)
..+|.||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999885 799999999999999999999999988754 4578899998542 3333
Q ss_pred cCEEEEEeCCeE
Q 004539 363 FDKLILLGKGSL 374 (746)
Q Consensus 363 ~D~i~vL~~G~i 374 (746)
.++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.44 E-value=8.8e-14 Score=139.49 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred cCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEE
Q 004539 294 RGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~--~~p~illLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
..+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468887776 444444 499999999999999999877765 556777764 88999999996 467778754444
Q ss_pred eCCeEEE
Q 004539 370 GKGSLLY 376 (746)
Q Consensus 370 ~~G~iv~ 376 (746)
.+++...
T Consensus 135 ~~~~~~~ 141 (185)
T smart00534 135 RNLHMSA 141 (185)
T ss_pred eEEEEEE
Confidence 4454443
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=1.7e-13 Score=140.81 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 004539 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (746)
Q Consensus 269 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (746)
+.+.+.+...++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34555666555542 269999999999997664 46799999999999999999999999999865
Q ss_pred CCEEEEEecCCChHHHhccCEEEEEe
Q 004539 345 GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 345 g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+.-+|++||++ ..+..+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 57799999995 4788999887664
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.7e-12 Score=133.16 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=87.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCC-CCCHHHH
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTV~E~ 249 (746)
.|-+|+++.=..+.+++|.||||+|||||||.++....- ...|...... ...++|..|....+. ..++.++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc
Confidence 455566554222379999999999999999999831110 1235443221 234677777532221 1111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
+ +.. .-|.||++++++++.+|++++||||++|+|+.
T Consensus 89 ~------------------------------S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 89 Q------------------------------SAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred c------------------------------chH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 0 100 23689999999999999999999999999997
Q ss_pred HHHHH-HHHHHHHHHC---CCEEEEEecCCC
Q 004539 330 TALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (746)
Q Consensus 330 ~~~~i-~~~L~~l~~~---g~Tvi~~~H~~~ 356 (746)
....+ ...++++.+. +.++|++||++.
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 65444 5688888764 248999999964
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.41 E-value=2.7e-13 Score=122.89 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=61.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCC
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lT 245 (746)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999985 5889999998742 344557777777 554 59
Q ss_pred HHHHHHH
Q 004539 246 VKETLTY 252 (746)
Q Consensus 246 V~E~l~~ 252 (746)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=8e-13 Score=158.07 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=90.8
Q ss_pred ceEEEEeCC-eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCc-CCCCCCHHHHHHH
Q 004539 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (746)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~ 252 (746)
.+|+.+.++ ++++|.||||+|||||||+|+|...- ...| .+||.... .+ .+.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIF- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhhee-
Confidence 378888887 89999999999999999999984211 1122 13333321 11 1111110
Q ss_pred HHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 004539 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (746)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~ 332 (746)
. .+..+ + .+. .....+|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 ~-------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 A-------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred e-------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 0 011 11247999999999998876 799999999999999999999
Q ss_pred HH-HHHHHHHHHCCCEEEEEecCCC
Q 004539 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 333 ~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+ ...|+.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5778888777999999999964
No 425
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.35 E-value=2.2e-10 Score=118.92 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=121.7
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004539 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+.++.|=+.. =.++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..
T Consensus 75 ~~g~~~~~~~~-P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~ 151 (236)
T TIGR01247 75 QFGFLKEILVA-PASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARM 151 (236)
T ss_pred HhCHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443332 33678999999999999999999999999998877654 3455455555666778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHH
Q 004539 648 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 725 (746)
Q Consensus 648 ~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~ 725 (746)
+|.+.++.+.+++..+++++||.+.| .+|+|++|+.|++|.+|+.|++-..-.++ ....+.+.++++|+.+
T Consensus 152 ~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-------~~~~~~~~~~~~l~~~ 224 (236)
T TIGR01247 152 DSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-------SPTFPLEQDLLVLTLL 224 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-------CcccchHHHHHHHHHH
Confidence 99999988898988999999999998 79999999999999999999965543321 1123344578888888
Q ss_pred HHHHHHHHHH
Q 004539 726 VFGYRLLAYL 735 (746)
Q Consensus 726 ~~~f~~l~~~ 735 (746)
.+++.+++..
T Consensus 225 ~~~~~~l~~~ 234 (236)
T TIGR01247 225 AVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.34 E-value=3.5e-12 Score=133.44 Aligned_cols=173 Identities=17% Similarity=0.228 Sum_probs=105.1
Q ss_pred EEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC--CEe-CC-hhccC---cEEEEecCCcCCCCCCHHHHH
Q 004539 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~--G~~-~~-~~~~~---~i~yv~Q~~~l~~~lTV~E~l 250 (746)
+.+..||.++|+||+|+|||||++.|.+.......+..+.+- +.+ .. .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 368899999999999999999999999754321111222221 111 11 11111 1222333222 111111
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHHcC------------CCccccccccCccccCCCHHH--------HHHHHHHHHH
Q 004539 251 TYAALLRLPNTLTKQQKEKRAIDVINELG------------LERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEI 310 (746)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~~~~vg~~~~~~LSGGe--------rqRv~IA~aL 310 (746)
.... ...+.++... .-| +.+..++..| ...+.+|||+ +||+++||++
T Consensus 86 ~~~~-----------~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 86 QVAE-----------MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHH-----------HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 1000 0000111111 001 1222344333 2335689999 9999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 311 IINPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~-i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 999999999 999999766654 54 55555457899999999864 578999999999987
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.32 E-value=2.5e-12 Score=131.57 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 004539 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPT-----sgLD~~~~~~i~~~L~~l~~ 343 (746)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 428
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.31 E-value=7.1e-11 Score=120.24 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004539 582 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 661 (746)
Q Consensus 582 ~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~ 661 (746)
+...++++|.+..++..+++.+++..+.|++.|++.. +++.+++.+++..++..++|.++++..++...+. ..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4467799999999999999999999999999999864 4666777778888899999999999998765443 33344
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004539 662 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 662 ~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 739 (746)
.+.++++|.+.| .+|.|++|+.|++|.+|+.+++-...+++ .....+.++++|+++.+++.++++...|+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------~~~~~~~~~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------NDGTLWQAVAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566667887787 79999999999999999999998777643 12234668889999999999999988876
Q ss_pred hh
Q 004539 740 MK 741 (746)
Q Consensus 740 ~~ 741 (746)
.+
T Consensus 206 ~~ 207 (208)
T TIGR03062 206 KR 207 (208)
T ss_pred hc
Confidence 54
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=2.5e-11 Score=125.06 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=88.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
+.+.+|+++.+++|++++|.||||+||||+++++++.... ...|...... .-.++|..| ++..+...|+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~---i~~~~~~~d~ 86 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDS---VLTRMGASDS 86 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccce---EEEEecCccc
Confidence 5689999999999999999999999999999999983221 2345543221 112333322 1111111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~p~illLDEPTsgLD 327 (746)
+. .++| ..|-+|++-...-+.+|+++|||||.+|.|
T Consensus 87 ~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 87 IQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 10 0112 224555555555667899999999999988
Q ss_pred HHHHHHH-HHHHHHHHHC-CCEEEEEecCCC
Q 004539 328 STTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~-g~Tvi~~~H~~~ 356 (746)
+.....+ ...++.+.+. +.++|++||++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7776664 5667777765 889999999964
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.27 E-value=9.2e-12 Score=134.25 Aligned_cols=170 Identities=27% Similarity=0.397 Sum_probs=118.0
Q ss_pred EeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h------------ccC--cEEEEecC
Q 004539 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQD 237 (746)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------~------------~~~--~i~yv~Q~ 237 (746)
-+||++.+++|.||-||||-+++++|++. |+. |.- .++-+..+ + ++. +.-||.|-
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k-pnl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK-PNL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC-CCC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHH
Confidence 35899999999999999999999999764 332 211 01111000 0 000 00111111
Q ss_pred CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEE
Q 004539 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (746)
Q Consensus 238 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~il 317 (746)
+... ..+|.++|. ....++..+++++.+.|.+..+..+ ..|||||-||.+||++-+.+.++.
T Consensus 174 pr~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advy 235 (592)
T KOG0063|consen 174 PRAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVY 235 (592)
T ss_pred HHHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhccee
Confidence 1111 113333332 1222234667788888877766544 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++|||.+.||...+..--..++.+....+=||++-||++- +--+.|-+.+|..
T Consensus 236 MFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 236 MFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred EecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 9999999999999999999999998888899999999874 4445788888864
No 431
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.25 E-value=4.7e-09 Score=110.55 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=146.1
Q ss_pred HHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHh
Q 004539 494 TILFRRGIKE-HRH-DYFSWLRITQVLATAVILGLLWWQSDSK-SPKGLEDQA--GLLFFIAVFWSFFPIFTAIFTFPQE 568 (746)
Q Consensus 494 ~~L~~R~~~~-~R~-~~~~~~r~~~~i~~ali~G~lf~~~~~~-~~~~~~~~~--g~lff~~~~~~~~~~~~~i~~~~~e 568 (746)
..+.+|+++. .|+ +......+++-++.-+++|..+-....+ +..+..+.. |++-+.+++.++......+..-..|
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~ 87 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMRV 87 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888875 455 4444445666666667777776432110 101111111 2222222222211100000011123
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004539 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 648 (746)
Q Consensus 569 R~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~ 648 (746)
+..++|-+..-. ++..++++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|++++++.+
T Consensus 88 ~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~ 164 (253)
T TIGR01291 88 TRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAALAP 164 (253)
T ss_pred cccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444333333 6789999999999777777776655555443 44433 33444444555667777899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHH
Q 004539 649 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMV 726 (746)
Q Consensus 649 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~ 726 (746)
+.+.+..+.+++..|+++.+|.+.| .+|.|++|+.+++|..|+.|++-..-+++ +..+.+.++++++++.
T Consensus 165 ~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~~~~l~~~~ 236 (253)
T TIGR01291 165 SYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG--------PGTQVGLHLGALCLYA 236 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHH
Confidence 9999988889999999999999988 79999999999999999999975554432 1112335678888888
Q ss_pred HHHHHHHHHHHHHh
Q 004539 727 FGYRLLAYLSLRKM 740 (746)
Q Consensus 727 ~~f~~l~~~~L~~~ 740 (746)
+++..++....|+.
T Consensus 237 vv~~~la~~~fr~~ 250 (253)
T TIGR01291 237 VVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888777766543
No 432
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.24 E-value=1.4e-11 Score=143.85 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.0
Q ss_pred cCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~----p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
+.+||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++++ ++|||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 44689999999
Q ss_pred eCCe
Q 004539 370 GKGS 373 (746)
Q Consensus 370 ~~G~ 373 (746)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 433
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.22 E-value=7.2e-09 Score=108.92 Aligned_cols=235 Identities=11% Similarity=0.152 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC-CC------CChhhH--HHHHHHHHHHHHHHHHHHHH
Q 004539 490 IQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DS------KSPKGL--EDQAGLLFFIAVFWSFFPIF 559 (746)
Q Consensus 490 ~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~-~~------~~~~~~--~~~~g~lff~~~~~~~~~~~ 559 (746)
++++..+++|.++. .|++.....-+++-++.-+++|.+|-.. +. ++..+. .--.|++-+...+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 35788899999986 5666655556777777778888887432 10 000011 112233333222222211
Q ss_pred HHHH-HhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004539 560 TAIF-TFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 560 ~~i~-~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
+.. ...+|+..+.+=+.... +...+.+++++...-..++..+++.++.+. .|.+.....++.....+++..++..+
T Consensus 79 -~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 -SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred -hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 11233334444454444 677899999999987777776665555543 36665544444444455566677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--C---CccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 004539 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--E---VPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 713 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~---ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~ 713 (746)
+|+++++++++.+.+..+.++++.+++..+|.+.| . +|.|++|+.+++|++|..|++=..-+++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~----------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ----------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC-----------
Confidence 99999999999988888888888888889998865 3 4889999999999999999875432211
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh
Q 004539 714 SGFREVCALVAMVFGYRLLAYLSLRKM 740 (746)
Q Consensus 714 ~~~~~~~iL~~~~~~f~~l~~~~L~~~ 740 (746)
..+....+++++.+++.+++....|+.
T Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~fr~~ 251 (253)
T TIGR03861 225 LNLPALGWTLGATTLFTLLAFWGFDPQ 251 (253)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 124456677788887777777766553
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.22 E-value=2.6e-10 Score=128.24 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=115.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC---Ch---------hccCcEEEEec
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~yv~Q 236 (746)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999853 3 4579999965443 21 24567889987
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH-HHHhhCCC
Q 004539 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA-~aL~~~p~ 315 (746)
.+.-. -.+....+.+ -.+.|.+.+-| .|..+- ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g----~~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQG----LNVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCC----CcEEEE---EeChH-----HHHHHHHHHH----
Confidence 54311 1111111111 11223333323 222221 11222 11111 2211
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004539 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 316 illLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||++. ..||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 122453 689999999999999999873 575 99999999874 6799999999999999998766
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.21 E-value=3e-11 Score=140.22 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 589999999999999997 5899999999999999999999999999975 789999999985 458999999998
Q ss_pred CC
Q 004539 371 KG 372 (746)
Q Consensus 371 ~G 372 (746)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 75
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.21 E-value=2.4e-11 Score=141.93 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.7
Q ss_pred cccCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004539 292 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----------~~p~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
.+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 4899999999964 45
Q ss_pred hccCEEEEEeC-CeE
Q 004539 361 HKFDKLILLGK-GSL 374 (746)
Q Consensus 361 ~~~D~i~vL~~-G~i 374 (746)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 554
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.8e-10 Score=133.10 Aligned_cols=137 Identities=23% Similarity=0.392 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHH------HHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004539 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
..|++.|.+.|...+.+.+. .....+..+.++ |..+||+... .++...+|||||.||+-||..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 35788888888766553211 111122222333 3345665322 12344689999999999999997653
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004539 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
=+++||||+.||-+..-.++++.|++|.+.|-|+|++-||+ +....+|+|+=| +.|+|++.|+++++++
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999999995 467889999998 5689999999999985
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.8e-11 Score=148.77 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.7
Q ss_pred ccccCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004539 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
..++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++.+.|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 3567899999999999999986 79999999999999999999999999999878999999999975 467
Q ss_pred hccCEEEEEeCC
Q 004539 361 HKFDKLILLGKG 372 (746)
Q Consensus 361 ~~~D~i~vL~~G 372 (746)
..+|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
No 439
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.19 E-value=5.6e-09 Score=108.31 Aligned_cols=162 Identities=17% Similarity=0.256 Sum_probs=113.9
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004539 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+..+.|=+..-. ++..|+++|++..++..++..+++. +++++.|++.....+ ..++.+.+..+++.+++.+++++.
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666655544 7889999999988888776655554 556677988654332 223333444455666777777766
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHH
Q 004539 648 M---DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCAL 722 (746)
Q Consensus 648 ~---~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL 722 (746)
+ +.+.+..++++..++++++||.+.| .+|.|++|+.+++|++|+.+++-..-.+ |.+....+.+++++
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-------~~~~~~~~~~~~~l 213 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-------SVDTFGAVRDLVVV 213 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-------CCChhhHHHHHHHH
Confidence 4 4555577888888899999999998 7999999999999999999987554332 22223345677788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004539 723 VAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 723 ~~~~~~f~~l~~~~L~~ 739 (746)
+++.+++..++....||
T Consensus 214 ~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 214 LAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888887777666553
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=2.6e-11 Score=145.54 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. .++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999988 8999999999999999999888854 577777778999999999542 22334544443 45
Q ss_pred eEEEe
Q 004539 373 SLLYF 377 (746)
Q Consensus 373 ~iv~~ 377 (746)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 441
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=1e-10 Score=120.16 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=90.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+-+|+++..++|++++|.||||+||||+++.+++...- ... |..+..+ ..+++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQM------GMDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHc------CCccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999873210 011 1111111 1112221 22232222222
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 004539 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEPTSGL 326 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~p~illLDEPTsgL 326 (746)
++.. ++|- -|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 1111 2455555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CCEEEEEecCCC
Q 004539 327 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 327 D~~~~~~i~~~-L~~l~~~-g~Tvi~~~H~~~ 356 (746)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999888888 7777765 899999999964
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.12 E-value=5.7e-10 Score=115.82 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=91.6
Q ss_pred EEeCCeEEEEECCCCccHHHH-HHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhcc
Q 004539 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-L~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 257 (746)
-+++|+++.|.|+|||||||| ++.+.+... .| .++.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 688886321 12 124555532 35555555443222
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 004539 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL----DST 329 (746)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgL----D~~ 329 (746)
. .. ++.... +.-...+ .. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 0000001 01 136777665555444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhccCEEEEEe
Q 004539 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (746)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~------~i~~~~D~i~vL~ 370 (746)
...++++.++++++.|.|+++++|+... .+...+|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998778887776664321 0233457777776
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.11 E-value=8.5e-11 Score=120.14 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004539 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
..+|.|+||.+.|...|...+ .++++|||-++|+|..+..+++.|++..+.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988776 899999999999999999999999887765789999999864
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.11 E-value=8.1e-10 Score=110.06 Aligned_cols=145 Identities=21% Similarity=0.125 Sum_probs=94.9
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHH
Q 004539 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (746)
Q Consensus 186 ~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 265 (746)
+.|.||+|+|||||.--++-... .. | +.+.|+.= ..|..+.+.....+. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~------g--------~~v~~~s~------e~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---AR------G--------EPGLYVTL------EESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HC------C--------CcEEEEEC------CCCHHHHHHHHHHcC----CCh-
Confidence 67999999999999876652111 11 1 12445432 134555444433221 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 004539 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQ 336 (746)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~IA~aL~~~p~illLDEPTsgLD---~~~~~~i~~ 336 (746)
++ +...|+....+ ..+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 54 ------~~-l~~~g~l~~~d-----~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 54 ------ER-LEDEGLLAIVD-----ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred ------HH-HHhcCCeEEEe-----cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 11 12233322223 234578999998 4444555667999999999999999 888888889
Q ss_pred HHHHHHHCCCEEEEEecCCCh--------HHHhccCEEEEEe
Q 004539 337 MLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLG 370 (746)
Q Consensus 337 ~L~~l~~~g~Tvi~~~H~~~~--------~i~~~~D~i~vL~ 370 (746)
.++.+++.|.|+|+++|.... .+...||.|+.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999988889999999998653 2567789999887
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.07 E-value=8.3e-11 Score=116.62 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004539 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
..+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 43444 345666666666799999999984 34567899999999
Q ss_pred CeEEEecC
Q 004539 372 GSLLYFGK 379 (746)
Q Consensus 372 G~iv~~G~ 379 (746)
|++++.-+
T Consensus 151 ~~i~~~~~ 158 (174)
T PRK13695 151 GRVYELTP 158 (174)
T ss_pred cEEEEEcc
Confidence 99987743
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=103.60 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=60.7
Q ss_pred cCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEE
Q 004539 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (746)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~ 367 (746)
|+...+.-|-||-=---+.+. ..+.-|.+||||-++|.|.-+.+++..|+++++.|.-+|+.||.|- +..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEE
Confidence 334445689999754334433 4577899999999999999999999999999999999999999874 2222 13555
Q ss_pred EEeCCe
Q 004539 368 LLGKGS 373 (746)
Q Consensus 368 vL~~G~ 373 (746)
-++.+-
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 555543
No 447
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=5.1e-10 Score=137.70 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.6
Q ss_pred cccCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 004539 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 292 ~~~~LSGGerq------Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
.+..|||||++ |++||++++.+|+++++||||++||+..+..+.+.|..+...+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555566788999999999999999999999999999998776789999999963 6788999
Q ss_pred EEEEeC
Q 004539 366 LILLGK 371 (746)
Q Consensus 366 i~vL~~ 371 (746)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 448
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=7e-10 Score=141.18 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHhccCCCCCcHH---HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH------HHHHHHHHhhCC
Q 004539 244 LTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINP 314 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~IA~aL~~~p 314 (746)
.|+.|||.+ . +. .+.+ ....+..+++.. +... |+.++. ...||||||| |++||++++.+|
T Consensus 1156 ~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1156 GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 599999987 1 11 1211 111223333332 2333 555542 2479999999 999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCChHHHhcc
Q 004539 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~~~i~~~~ 363 (746)
++|+|||||+|||+.+...+.+.|.++.. .|.|||++||++. .+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999988742 3789999999965 354443
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.99 E-value=7.9e-09 Score=125.50 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChH--------HHhccCEEEEEeCCeEEEecCHH
Q 004539 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 311 ~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~--------i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
..+|+++++|||+.+| |+..+..+.+.++++.+.|.++|++||++... +.+.||.+++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998642 2368999999999998777643
Q ss_pred HHHHHHHhcCC
Q 004539 382 EAMAYFSSIGC 392 (746)
Q Consensus 382 ~~~~~f~~~G~ 392 (746)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
No 450
>PRK15066 inner membrane transport permease; Provisional
Probab=98.98 E-value=4.7e-07 Score=95.51 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004539 581 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVT 660 (746)
Q Consensus 581 Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~ 660 (746)
-+...+.+++++...-..++..++..++.+...|.+... ...++..+++..++....|++++++.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 377789999999887666666655555555544665432 222333333333333445888888888888888888888
Q ss_pred HHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHHHHHHHHHHHHHH
Q 004539 661 IMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLR 738 (746)
Q Consensus 661 ~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~ 738 (746)
+.+++..+|.+.| .+|+|++|+.+++|+.|..|++=..-+++ .....+.++++++++.+++.+++....|
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------SDVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999887 79999999999999999999875433211 1112356778888999888888888776
Q ss_pred Hhh
Q 004539 739 KMK 741 (746)
Q Consensus 739 ~~~ 741 (746)
+.+
T Consensus 251 r~~ 253 (257)
T PRK15066 251 RGR 253 (257)
T ss_pred hhc
Confidence 554
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=1.4e-09 Score=135.40 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=68.8
Q ss_pred ccccCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 004539 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~--------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (746)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ..-++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4567899999999999999996 89999999999999999999999999999888999999999743 23344
Q ss_pred cCEEEEEeC
Q 004539 363 FDKLILLGK 371 (746)
Q Consensus 363 ~D~i~vL~~ 371 (746)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 556666654
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.96 E-value=1.9e-09 Score=116.75 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=94.5
Q ss_pred ceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEecCCcCCCCCCHHHHHHHH
Q 004539 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
=+++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.++..+ +....+..+.++.+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~--~~~~~iv~ied~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI--PKDERIITIEDTREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC--CccccEEEEcCccccCCCCCCEEEEEecCC---------------
Confidence 366789999999999999999999999999854 3445666664311 0000011121111100
Q ss_pred HhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 004539 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (746)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~ 333 (746)
.+ + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 199 ---------------------------~~------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 199 ---------------------------GQ------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ---------------------------CC------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 00 0 001111 1245667888999999999996 34
Q ss_pred HHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004539 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 334 i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
..+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56677776543346799999976 45668999999999998888877765
No 453
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=3.3e-09 Score=102.05 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH
Q 004539 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~ 358 (746)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566677888888999999999999995 4455555665555555544689999999987543
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=4e-09 Score=117.88 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=114.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004539 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|.. . +..|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~-~~~gvI~~iGer------- 193 (432)
T PRK06793 131 FEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-K-ADINVISLVGER------- 193 (432)
T ss_pred hheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-C-CCeEEEEeCCCC-------
Confidence 45555554441 234688885 999999999999999999999999999853 2 345666555532
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004539 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
..+|+|.+.... ..-++.+. ..+ ....+-|.|+|+|+..+.+
T Consensus 194 -------------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 -------------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred -------------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 146766654321 11122110 111 1235689999999999988
Q ss_pred Hh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004539 310 II-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 310 L~-------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
.+ .++-++++||||+..|+. .+|-..+.+.-..|.+..+.+|- + ++++|.-..++|.|...++.
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 87 789999999999999996 55555556654458888888884 2 33444444678988777654
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=3.7e-09 Score=130.35 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=66.6
Q ss_pred cccCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C-CEEEEEecCCChHHHhc
Q 004539 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-A-G-KTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 292 ~~~~LSGGerqRv~I------A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~Tvi~~~H~~~~~i~~~ 362 (746)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.|+...+ . | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 456899999999975 5899999999999999999999999999999986543 3 3 48999999975 4578
Q ss_pred cCEEEEEe
Q 004539 363 FDKLILLG 370 (746)
Q Consensus 363 ~D~i~vL~ 370 (746)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.86 E-value=1.1e-08 Score=103.72 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|.++. ....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 5788999999999999996 665433333 345569999999999763 46678887664
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.85 E-value=2.6e-08 Score=103.52 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=97.5
Q ss_pred cceece-EEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004539 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
.-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| +++.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 345554 55799999999999999999999998852110 1 11 2345555432 33333
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~p~illLDEPTsg-- 325 (746)
+.-...... .. .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 222111110 00 01100 011111111110 112356788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhccCEEEEEeC
Q 004539 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 371 (746)
Q Consensus 326 -LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~------~i~~~~D~i~vL~~ 371 (746)
+|.....++++.++.+++.|.|+++++|+... .+...+|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777779999999998653 13455677776653
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.81 E-value=4.8e-09 Score=132.48 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred cccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004539 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57799997
Q ss_pred EEe
Q 004539 368 LLG 370 (746)
Q Consensus 368 vL~ 370 (746)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.74 E-value=5.7e-08 Score=101.36 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=83.6
Q ss_pred CeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-EeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC
Q 004539 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 261 (746)
|++..|+||+|+|||||.-.++=.. ..|.=.+++ ... ....++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6789999999999999998876311 123212211 111 1123455554322
Q ss_pred CcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 004539 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (746)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~----------------aL~~~p~illLDEPTs- 324 (746)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555443322211 1244555554443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCC
Q 004539 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 325 -----gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~ 356 (746)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999765 899999999864
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=1.7e-08 Score=127.52 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.1
Q ss_pred cccCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004539 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
.+..||||||++++||++++. +|+++|||||+++||+.....+.+.|+++++ +.++|++||++. .+..||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356799999999999999985 6799999999999999999999999999865 578999999974 568999998
Q ss_pred EEeC
Q 004539 368 LLGK 371 (746)
Q Consensus 368 vL~~ 371 (746)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.72 E-value=3.9e-08 Score=111.55 Aligned_cols=151 Identities=22% Similarity=0.280 Sum_probs=92.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHH
Q 004539 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 250 (746)
.++++.+..++.|++++++||||+||||++..|++++. ...|. ++|++|.+|. + ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 35667777788999999999999999999999998542 11231 2578999886 2 47899999
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 004539 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (746)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~IA~aL~~~p-----~illLDEPTs 324 (746)
.+.+.... ++........+......++.+....+| .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766432 111111122233334456665544433 232222322 234444555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 004539 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H 353 (746)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555444555555555
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=2.6e-08 Score=122.75 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.2
Q ss_pred ccCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHH
Q 004539 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (746)
Q Consensus 293 ~~~LSGGerq------Rv~IA~aL~~~-----p-~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i 359 (746)
+..||||||+ |++|+++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999998864 3 67999999999999999999999999876564 8999999975 3
Q ss_pred HhccCEEEEEeCC
Q 004539 360 FHKFDKLILLGKG 372 (746)
Q Consensus 360 ~~~~D~i~vL~~G 372 (746)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5679999999743
No 463
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.69 E-value=1.5e-08 Score=113.27 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
+.+|++||+++++||+++|+|||||||||||+ +|.. .++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5543 3444448999999874
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=6.1e-07 Score=82.92 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHCCCEEEEEec
Q 004539 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ------MLQDIAEAGKTVVTTIH 353 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~------~L~~l~~~g~Tvi~~~H 353 (746)
...+++..+..+.++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467788888888888887899999999999999998877664 22222334778899988
No 465
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.67 E-value=5e-06 Score=87.14 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=119.3
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 004539 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG-AI 646 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~-a~ 646 (746)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....++.+...+.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 567777777777666666666666666666732 233444445555566667777777666 35
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHH
Q 004539 647 LMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 724 (746)
Q Consensus 647 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~ 724 (746)
..+.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+.. .+..+.++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 266 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------NDGIWISLLILLL 266 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHH
Confidence 566778888888888999999999998 7999999999999999999998766543321 1225667889999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 004539 725 MVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 725 ~~~~f~~l~~~~L~~~~~~ 743 (746)
+.+++.+++...+|+..++
T Consensus 267 ~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999887653
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.54 E-value=6.6e-07 Score=98.48 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004539 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4677888999999999997 8888765444 34569999999998653 3556776544
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.51 E-value=8.6e-07 Score=108.37 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888999999999999999 7999999999999998889999999999764
No 468
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.49 E-value=5e-06 Score=80.87 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=92.9
Q ss_pred hHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHH
Q 004539 565 FPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGA--GPFFLSMLTVFLSIVAAQGLGLA 642 (746)
Q Consensus 565 ~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~--~~Ff~f~l~~~l~~~~~~slg~~ 642 (746)
.-.|+.++.|-+..-. +.+.|+++|++...-..+++.++..++.+++ |.+.+. ...+.+++...+...+...++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888777 6789999999999999999888777777544 887663 22223333333344444555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHH
Q 004539 643 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILL 696 (746)
Q Consensus 643 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~ 696 (746)
++...++.+..+ ...++.+|+++.+|.+.| .+|.|++|+.+++|..|+.+++=
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 655555554433 446667787788888888 89999999999999999999873
No 469
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=2.4e-07 Score=102.68 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004539 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~---------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 599999999999999999 99999999999999999999999999753 679999999864
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.46 E-value=5.6e-08 Score=100.52 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.6
Q ss_pred ceece-EEEEeCCeEEEEECCCCccHHHHHHHHH
Q 004539 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~ 204 (746)
-|+++ .+-+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4679999999999999999999988665
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.45 E-value=3.1e-07 Score=101.32 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 004539 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 24555555443 56999
Q ss_pred EEEEeCCeEEEec
Q 004539 366 LILLGKGSLLYFG 378 (746)
Q Consensus 366 i~vL~~G~iv~~G 378 (746)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875443
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.45 E-value=1.5e-08 Score=116.39 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=99.2
Q ss_pred cceece-EEEEeCCeEEEEECCCCccHHHHHHHHH--cCCCCCCCccEEEECCEeCChhcc---CcEEEEecCCcCCCCC
Q 004539 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSLK---SKIGFVTQDDVLFPHL 244 (746)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~--G~~~~~~~~G~I~~~G~~~~~~~~---~~i~yv~Q~~~l~~~l 244 (746)
+-|+.+ .+=+++|..+.|.||+|||||||..-.+ |.. .. -+.-+++....-.++++ +..|+..++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-~~-ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-HF-DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hC-CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc---
Confidence 345664 5678999999999999999999988663 311 10 12345554433222221 2344443321100
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 004539 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA--~aL~~~p~illLDEP 322 (746)
+++.+ . . .... .....+++.+++.+..+.. .+.+|+|++|||.|+ .+|..+|+..
T Consensus 83 ---g~l~~-----~-~-~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI-----L-D-ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE-----E-e-cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 0 0 0000 0011123344444444432 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH-------H-HhccCEEEEEe
Q 004539 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~-------i-~~~~D~i~vL~ 370 (746)
...+..+.+.++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999888899999999986420 1 45789999987
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.44 E-value=1.6e-06 Score=97.94 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=107.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh------------hccCcEEEEec
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q 236 (746)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|.. . +..|.+...|..-.+ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35789999 999999999999999999999999999854 3 345666665554321 11233444444
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH-HHHhhCCC
Q 004539 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA-~aL~~~p~ 315 (746)
.+. +..+-..-+ ..... +.|.+...|- |..+- ...|+ |.+=| |++.
T Consensus 227 ~d~-----~p~~r~~~~-----------~~a~t-~AE~frd~G~----~Vll~---~DslT-----r~A~A~REis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-----------YVATA-IAEYFRDQGK----DVLLL---MDSVT-----RFAMAQREIG---- 273 (440)
T ss_pred CCC-----CHHHHHHHH-----------HHHHH-HHHHHHHCCC----CEEEE---EeChH-----HHHHHHHHHH----
Confidence 332 121111100 00011 2222322232 22211 11222 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004539 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 316 illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||..+ ..+|++.-+.+|+++..++..+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 345675 459999999999999998876667 88889999754 56899999999999999987663
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.40 E-value=7.3e-07 Score=89.53 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=61.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEecCC--cCCCCCCHHH
Q 004539 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~--~l~~~lTV~E 248 (746)
..+=+.+.+++|+.++|+||||||||||+++|+|... +..|.|.+++..-. ...+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4455556789999999999999999999999998653 45799999774321 12234567766654 3466789999
Q ss_pred HHHHHHhcc
Q 004539 249 TLTYAALLR 257 (746)
Q Consensus 249 ~l~~~~~~~ 257 (746)
.+..+.+..
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876543
No 475
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.39 E-value=2.9e-07 Score=103.20 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=104.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh----------hccCcEEEEec
Q 004539 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~----------~~~~~i~yv~Q 236 (746)
...+|+++ +++.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.+ ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 45799999 999999999999999999999999999854 3321 2445555554432 12456899999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHHH-HHHHHHHhhCC
Q 004539 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR-VCIGNEIIINP 314 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqR-v~IA~aL~~~p 314 (746)
++..+..+++.|++.+.+....... .+++=.+ .+...+ |-+| +++
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g----------~~Vll~~Dsltr~a---------------~A~REisl-------- 266 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKG----------HDVLLLVDSLTRYA---------------MAQREIAL-------- 266 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhcc----------CCEEEeecchhHHH---------------hhhhHHHH--------
Confidence 9999989999999887664321000 0010000 001111 1111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHH---CC-CEEEEEecCCChHHH-hccCEEEEEeCCeEEEec
Q 004539 315 SLLFLDEP--TSGLDSTTALRIVQMLQDIAE---AG-KTVVTTIHQPSSRLF-HKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 315 ~illLDEP--TsgLD~~~~~~i~~~L~~l~~---~g-~Tvi~~~H~~~~~i~-~~~D~i~vL~~G~iv~~G 378 (746)
.+.|| +.|-.+..-..+-+++.+--+ .| .|.+.+..-+..++- -.+|.+.-+-||+|+..-
T Consensus 267 ---~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 ---SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred ---hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 22344 236766666666666665421 12 466666654433322 246788888899998853
No 476
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.38 E-value=1e-06 Score=108.87 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=69.4
Q ss_pred cccCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 004539 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~------~~--p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (746)
.+..|||||+-.++||.+|+ .+ -+.|||||||..||+.+...+++.|.++...+.+|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887764 35 699999999999999999999999999988899999999995 467889
Q ss_pred CEEEEEeC
Q 004539 364 DKLILLGK 371 (746)
Q Consensus 364 D~i~vL~~ 371 (746)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.33 E-value=5e-07 Score=91.39 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=65.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHh-ccCCCCCc
Q 004539 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 263 (746)
Q Consensus 185 ~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~~ 263 (746)
+++|.||||||||||.+.|++.+ . .|. +.++++|+.+. .++..+....... ...|..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l---~-~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---G-NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---C-CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCc--
Confidence 57999999999999999999854 1 222 34555554332 2333333222111 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004539 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
...+...+.+..+...+..+.. ....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 59 --~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 --FDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --ccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1223344566665544332222 24577777776554 5678999999999999986
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.30 E-value=1.7e-06 Score=97.21 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC---EeC
Q 004539 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~ 223 (746)
+..++.++++..|. ....+++.++ .+.+||.++|+||||+|||||+++|++.. . +..|.|.+.| .++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 34588999988773 2357889886 99999999999999999999999999743 3 4578888864 444
Q ss_pred Ch--------hccCcEEEEecCCc
Q 004539 224 SK--------SLKSKIGFVTQDDV 239 (746)
Q Consensus 224 ~~--------~~~~~i~yv~Q~~~ 239 (746)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12467999999874
No 479
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.29 E-value=1.4e-06 Score=106.38 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=86.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
..|-+|+++. +.+.++.|.|||++||||+||.++-... -..-| +|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-lAq~G-----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-LAQIG-----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-HHhcC-----------------CceeccceE---ecccCe
Confidence 4577888888 6778999999999999999999873110 00011 233332211 111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 004539 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 324 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~p~illLDEP---Ts 324 (746)
+..++|-. |. ...++|--+.....++..|-. +++++|+||| |+
T Consensus 653 ------------------------I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 ------------------------IFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ------------------------eeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11112211 11 124677766777777776654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCE
Q 004539 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
.+|..+ .....++.+.+. |.++|++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999544 455566666655 58999999993 46677664
No 480
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=6.5e-06 Score=104.27 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=90.4
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHH
Q 004539 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
.=+++..+.+++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... .. +-.++... .+..
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~-- 264 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMK-- 264 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-hh--cccccccc-------cchh--
Confidence 335667788999999999999999999999876543 34799988763221100 00 00010000 0000
Q ss_pred HhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 004539 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (746)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~ 333 (746)
....++.+.++++..++. + ..+ ++.|+|+ ..++-+|+||+- |.. .
T Consensus 265 ----------~~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~L------~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 265 ----------LHLQRAFLSEILDKKDIK------I-----YHL-GAMEERL------KHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred ----------HHHHHHHHHHHhCCCCcc------c-----CCH-HHHHHHH------hCCeEEEEEeCC----CCH---H
Confidence 001122233444433331 1 112 5566663 345567788984 433 3
Q ss_pred HHHHHHHHH---HCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEecCHHHHHHHHHhcCC
Q 004539 334 IVQMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (746)
Q Consensus 334 i~~~L~~l~---~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~ 392 (746)
.++.|.... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|...-+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 344444432 348899999999542 2222 576655531 145678888876544
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.20 E-value=1.9e-06 Score=109.90 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.0
Q ss_pred ccCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004539 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 293 ~~~LSGGerqRv~----IA~a--------L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.+.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 45799999999999999999999999999887 78999999873
No 482
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.20 E-value=4.2e-05 Score=93.45 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004539 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999998889999999999753
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.14 E-value=1.4e-06 Score=86.74 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh--c-cCcEEEEecCCcCCCCCCHHHHHHHH
Q 004539 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--L-KSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~--~-~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
+||+++|+|+||||||||+++|+|++. -+.++|.++... . +...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998542 257888776421 2 22356777765555555666666543
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.12 E-value=6.2e-05 Score=79.85 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=32.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHc
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G 205 (746)
.+.|+++.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457888888999999999999999999999998874
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.10 E-value=8.4e-05 Score=90.94 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=49.1
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh--------HHHhccCEEEEEeC
Q 004539 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLGK 371 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~--------~i~~~~D~i~vL~~ 371 (746)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.. .+.+.++-.++|.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 45899999999999999 788999999999998889999999999752 24445555555544
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.99 E-value=5e-05 Score=70.84 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCC
Q 004539 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~ 356 (746)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445556666778999999998765 56667778888887643 4678888888643
No 487
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.98 E-value=1.3e-05 Score=88.73 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.1
Q ss_pred ceEEEEeEEEEEeecccccccccccee-----------ceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC
Q 004539 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (746)
..++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+...
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3599999999983 2346786 999999999999999999999999999999643
No 488
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.0036 Score=66.43 Aligned_cols=230 Identities=17% Similarity=0.242 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHH-hhcch--hHHH---HHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH--HH
Q 004539 489 WIQQYTILFRRGIKE-HRHDY--FSWL---RITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI--FT 560 (746)
Q Consensus 489 ~~~Q~~~L~~R~~~~-~R~~~--~~~~---r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~--~~ 560 (746)
.++....|.+|.++. .|+.. ..|. =+++.++++++.|.++-.-+. +..-.++.-...+.|.+. ..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~-------~~~~~l~~G~~~w~f~~~~i~~ 88 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL-------NFLAYLLAGLILWFFFSEAISE 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHHHHHHHHh
Confidence 456677888999985 56554 2343 234445555566655533211 122122222222222221 12
Q ss_pred HHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 004539 561 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 640 (746)
Q Consensus 561 ~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg 640 (746)
+...+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.+ + .++......+.+..+.+.++|
T Consensus 89 ~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~ 162 (263)
T COG1682 89 GAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLG 162 (263)
T ss_pred HHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556555432 278899999999998766666666555555555544 3 344444445556666777778
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCch
Q 004539 641 LAIGAIL---MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 715 (746)
Q Consensus 641 ~~i~a~~---~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~ 715 (746)
+++|+++ +|.... -+.+.-+++..+|-+=+ .+|+.++|+.++||+.|-.|.+=..-+++..+ .
T Consensus 163 l~~a~l~v~fRD~~~i---~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~---------~ 230 (263)
T COG1682 163 LILASLGVRFRDLGQI---LGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP---------D 230 (263)
T ss_pred HHHHhHhhhcccHHHH---HHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc---------c
Confidence 8777664 554443 33444455556665543 79999999999999999999875555433222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004539 716 FREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 716 ~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
+.+.....+..++...++++..++.+++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345556667777777888887776654
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.96 E-value=1.7e-05 Score=89.37 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=67.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC---EeCCh----hcc---CcEEEE-----
Q 004539 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV----- 234 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~~~----~~~---~~i~yv----- 234 (746)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .++ .+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999985422 3346777755 44421 121 234555
Q ss_pred ecCCc--CCCCC---CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC
Q 004539 235 TQDDV--LFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 235 ~Q~~~--l~~~l---TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (746)
+|++. +.+.+ ++.|.+.. .....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~----~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRD----QGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHH----cCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 22222 33443332 1111123345667777888888774
No 490
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.96 E-value=8.7e-05 Score=74.21 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCccccccccCccccCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 004539 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (746)
Q Consensus 270 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~--IA~aL~~-~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (746)
.+.+.++..+++- -.+++ ....+++||+|++. +.+.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555443 34443 99999999999999999988764
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.95 E-value=9.9e-06 Score=66.30 Aligned_cols=35 Identities=43% Similarity=0.757 Sum_probs=27.9
Q ss_pred eeceEEEEeC-CeEEEEECCCCccHHHHHHHHHcCC
Q 004539 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (746)
.++.++.+.+ |+++.|.||||||||||+++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445667775 5699999999999999999987433
No 492
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.95 E-value=0.0041 Score=65.11 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=92.6
Q ss_pred HHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccC--CCCChHHHHHHHHHHHHHHHHH
Q 004539 570 AMLSKERAADMY--------RLSAYFLARTTSDLPLNLVLPV---LFLVIVYFMAG--LRMGAGPFFLSMLTVFLSIVAA 636 (746)
Q Consensus 570 ~v~~rEr~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~ivY~m~g--l~~~~~~Ff~f~l~~~l~~~~~ 636 (746)
..+.+||++|.. +...++++|.+.-+-+.++..+ ++....++... -..+.+.++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456677777653 4578899999988655443332 22222222211 1235666665555666777788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--ccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 004539 637 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYF-VQEV--PVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 713 (746)
Q Consensus 637 ~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~ 713 (746)
.++|.++|+++.+...|..++.... +.++.|+- +.++ |++.+|+.|+||.+|-.+. . +| .++
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~-~-----------~g-~i~ 215 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDGLASLLWGGSAYTISELGLSYHYESI-S-----------RG-VID 215 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHHHhhhcchhHHHHHHHcCHHHHHHHH-H-----------cC-ccc
Confidence 8999999999998888765543332 22222221 3344 8889999999997774332 2 12 111
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 004539 714 SGFREVCALVAMVFGYRLLAYLSLR 738 (746)
Q Consensus 714 ~~~~~~~iL~~~~~~f~~l~~~~L~ 738 (746)
+.++...+.+.+.+..++...++
T Consensus 216 --~~~~v~~~~~~~~~l~l~~~~~~ 238 (240)
T TIGR03518 216 --SRDVIYFLSITVLFLALTKLQLK 238 (240)
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777776654
No 493
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.94 E-value=2e-05 Score=69.75 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=36.9
Q ss_pred ccCCCHHHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 004539 293 VRGVSGGERK-RVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (746)
Q Consensus 293 ~~~LSGGerq-Rv~IA~aL~------~------~p~illLDEPTsgLD~~~~~~i~~~L~~ 340 (746)
..++|||||| .+.++.+++ . .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 444444332 2 3799999999999999999999999874
No 494
>PRK01889 GTPase RsgA; Reviewed
Probab=97.93 E-value=1e-05 Score=89.51 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=59.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hccCcEEEEecCCcCCCCCCHHHHH
Q 004539 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l 250 (746)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..... ..++++.+++|+..++++ ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555555678999999999999999999999998543 458999998754322 235679999999888864 455555
Q ss_pred HH
Q 004539 251 TY 252 (746)
Q Consensus 251 ~~ 252 (746)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 44
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.92 E-value=3.3e-05 Score=88.06 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEecCCCh-------HHHhccCEEEEEeCCe
Q 004539 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (746)
Q Consensus 312 ~~p~illLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~-------~i~~~~D~i~vL~~G~ 373 (746)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234556666777754 59999999996432 1456789999998654
No 496
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.90 E-value=2.5e-06 Score=91.60 Aligned_cols=155 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004539 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+.+..|-+..|. +...|++++++..+.+.++..+++..+++-..+++.. .++..++.+++..++..+++.+++.++
T Consensus 187 ~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~is~~~ 263 (344)
T PF12698_consen 187 ESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIIIIFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLISSFF 263 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556665 7889999999999999888887766642211124433 455555666777888899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHH
Q 004539 648 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 725 (746)
Q Consensus 648 ~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~ 725 (746)
++...|..+++++.++.+.++|.+.+ .+|.+++|+.++.|.+|..+++...-+ |. ....+.++++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~~~ 334 (344)
T PF12698_consen 264 KNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIY--------GD-WSEIWISLIILLLF 334 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHH--------hc-HHHHHHHHHHHHHH
Confidence 99999888777776644444444443 789999999999999998887654432 21 11233566777777
Q ss_pred HHHHHHHHH
Q 004539 726 VFGYRLLAY 734 (746)
Q Consensus 726 ~~~f~~l~~ 734 (746)
.+++.+++.
T Consensus 335 ~~v~~~l~~ 343 (344)
T PF12698_consen 335 AVVYLLLAI 343 (344)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 777766654
No 497
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.89 E-value=1.4e-05 Score=83.05 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.2
Q ss_pred eCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccE----EEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHH
Q 004539 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (746)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~----I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 254 (746)
.+..+++|.||||||||||.+.|++.+. ..+|. |.+|+.......++..+++++.+. +...++.+.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHH
Confidence 4568999999999999999999998664 34676 555654433333444577665433 34556666555443
No 498
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.87 E-value=0.00035 Score=77.68 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=98.7
Q ss_pred EEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC
Q 004539 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 258 (746)
-|++| ++.|+|.+=-||||||++|.--.++. .-| ||...-- .......+--+|- ..|
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VV-T~~~avkirAEDG----R~V------------ 297 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVV-TDPDAVKIRAEDG----RSV------------ 297 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEE-ECCCceEEEecCC----ceE------------
Confidence 48889 99999999999999999997434321 122 2322100 0000001111110 000
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHH
Q 004539 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTALR 333 (746)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgL-----D~~~~~~ 333 (746)
. ...+.-++.. |+...||.- -....=||-.-|=.+|..||=..+++||+||=||+- |...+..
T Consensus 298 ----~----~vDISpFI~~--LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~L 365 (448)
T PF09818_consen 298 ----E----GVDISPFINN--LPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQAL 365 (448)
T ss_pred ----e----CccchHHHhh--CCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHh
Confidence 0 0001122332 355555431 112457999999999999999999999999999974 4444444
Q ss_pred H----------HHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004539 334 I----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 334 i----------~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
+ ++.+++|. +.|.+.|+++-- +.+.+..+|+|++|++=+.
T Consensus 366 v~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 366 VSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 4 55566664 358888887765 5578899999999998554
No 499
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.87 E-value=1.8e-05 Score=75.92 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.7
Q ss_pred ccCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004539 293 VRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL-----~~~p~illLDEPTsgLD~~~~~~i~~~L~~l 341 (746)
...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345789988887666553 2345655 99999999999999988764
No 500
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.84 E-value=1e-05 Score=81.99 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=42.1
Q ss_pred eCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecC
Q 004539 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (746)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~ 237 (746)
++|++++|+|+||||||||.+.|++++.. .-.|.+.++|.++.+.+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 57899999999999999999999986642 224789999987654433345555554
Done!