Query 004540
Match_columns 746
No_of_seqs 111 out of 114
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:53:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004540.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1844-1848//hhsearch_pdb/004540hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1f_C Cell adhesion molecule- 1.0 1 1 65.7 9.3 91 355-445 7-101 (102)
2 2ee3_A Collagen alpha-1(XX) ch 1.0 1 1 65.4 10.9 89 353-446 8-96 (108)
3 3b83_A Ten-D3; beta sheet, com 1.0 1 1 65.3 10.0 91 355-450 4-95 (100)
4 1x4y_A Biregional cell adhesio 1.0 1 1 65.3 10.8 92 355-446 11-106 (114)
5 3tes_A Tencon; fibronectin typ 1.0 1 1 64.5 10.1 89 353-446 2-91 (98)
6 1ujt_A KIAA1568 protein; fibro 1.0 1 1 63.1 9.4 89 357-446 17-112 (120)
7 2dn7_A Receptor-type tyrosine- 1.0 1 1 60.7 11.3 92 353-446 7-98 (107)
8 2edx_A Protein tyrosine phosph 1.0 1 1 60.7 9.7 92 355-446 21-116 (134)
9 2rb8_A Tenascin; beta sheet,lo 1.0 1 1 60.6 10.1 88 355-447 5-93 (104)
10 3t04_D Monobody 7C12; engineer 1.0 1 1 60.6 10.7 83 352-435 7-91 (103)
No 1
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=1.00 E-value=1 Score=65.66 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCCCCCCCC-EEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 674179998412048999276799--999861379876304878899992-44315773137525776602459998516
Q 004540 355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPT-CTLFAPNTRFVVTGLCPATEYQFKVVSSN 431 (746)
Q Consensus 355 ~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~y~~ePt-~~~~~p~~r~lvs~L~P~TEY~fkvvsF~ 431 (746)
++-.++.+.++++||.|-++.... ....|.||+|+||........+.. .++....++++|.+|.|.|.|.|+|.+||
T Consensus 7 ~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~V~A~n 86 (102)
T 3n1f_C 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFN 86 (102)
T ss_dssp CCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEEECCCHHHCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCCEEEEEEEEEC
T ss_conf 99635989868877999918989366388614699999999999987448999769946999799998988999999978
Q ss_pred CCCCCCCEE-EEEEC
Q ss_conf 886675214-68750
Q 004540 432 GTTELGRCE-IWFST 445 (746)
Q Consensus 432 ~~~elg~~E-~k~~T 445 (746)
..|+=-.++ +.|.|
T Consensus 87 ~~G~G~~S~~~~~~T 101 (102)
T 3n1f_C 87 EGGESEFSNVMICET 101 (102)
T ss_dssp TTEECCCCCCEEEEC
T ss_pred CCCCCCCCCCEEEEC
T ss_conf 996899988888556
No 2
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=65.36 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf 65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540 353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG 432 (746)
Q Consensus 353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~ 432 (746)
+.++-.++|.+|+++|+.|-++.. ...|.||++-|+........ ...+....+.+.|.+|.|.|+|.|+|.++++
T Consensus 8 ~~pP~~l~~~~vt~tsi~vsW~pp---~~~i~~Y~I~y~~~~~~~~~--~~~v~~~~t~~~l~~L~p~T~Y~v~V~A~~~ 82 (108)
T 2ee3_A 8 LAPPRHLGFSDVSHDAARVFWEGA---PRPVRLVRVTYVSSEGGHSG--QTEAPGNATSAMLGPLSSSTTYTVRVTCLYP 82 (108)
T ss_dssp CCCSSCEEEESCCSSCEEEEESCC---SSCCSEEEEEEEETTTCCBC--CEEEETTCCEEEECSCCSSCEEEEEEEEECT
T ss_pred CCCCCEEEEEECCCCEEEEEEECC---CCCCCEEEEEEEECCCCCEE--EEECCCCCCEEECCCCCCCCEEEEEEEEEEC
T ss_conf 999954798771588589996099---78841899999969999602--8995898699981899999999999999939
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 86675214687507
Q 004540 433 TTELGRCEIWFSTG 446 (746)
Q Consensus 433 ~~elg~~E~k~~T~ 446 (746)
.|+-...+..+.|.
T Consensus 83 ~g~s~p~~~~~~T~ 96 (108)
T 2ee3_A 83 GGGSSTLTGRVTTK 96 (108)
T ss_dssp TSCEEEEEEEEECC
T ss_pred CCCCCCCCCEEEEC
T ss_conf 97588724778728
No 3
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=65.34 Aligned_cols=91 Identities=23% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 674179998412048999276799999861379876304878-8999924431577313752577660245999851688
Q 004540 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT 433 (746)
Q Consensus 355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~ 433 (746)
++-.+++.+++++||+|-+.... ..|.||.++|+..... ... ...+....+.+.|.||.|.|+|.|+|.+++..
T Consensus 4 ~P~~l~~~~~~~~sv~lsW~pP~---~~i~~Y~v~y~~~~~~~~~~--~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~n~~ 78 (100)
T 3b83_A 4 PPFNIKVTNITLTTAVVTWQPPI---LPIEGILVTFGRKNDPSDET--TVDLTSSITSLTLTNLEPNTTYEIRIVARNGQ 78 (100)
T ss_dssp CCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEESSCTTTCE--EEEECTTEEEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCCEEEEECCCEEEEEECCCC---CCCCEEEEEEEECCCCCCCE--EEEECCCCEEEEECCCCCCCEEEEEEEEEECC
T ss_conf 59761999842888999981995---53877999999898999736--99979861099988979998999999999399
Q ss_pred CCCCCEEEEEECCCCCC
Q ss_conf 66752146875076656
Q 004540 434 TELGRCEIWFSTGSSRD 450 (746)
Q Consensus 434 ~elg~~E~k~~T~s~e~ 450 (746)
|.-........|...+.
T Consensus 79 g~s~p~~~~~~~~~~~~ 95 (100)
T 3b83_A 79 QYSPPVSTTFTTGSLEH 95 (100)
T ss_dssp EECCCEEEEEECCCCCC
T ss_pred CCCCCEEEEEEEEEEEC
T ss_conf 88998999998775421
No 4
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=1.00 E-value=1 Score=65.26 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 674179998412048999276799--999861379876304878-89999244315773137525776602459998516
Q 004540 355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431 (746)
Q Consensus 355 ~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~ 431 (746)
++..++.+.++++||.|-+..... ....|.||+|+||..... .......++..+.++++|.+|.|.|+|.|+|.+|+
T Consensus 11 ~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 90 (114)
T 1x4y_A 11 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFN 90 (114)
T ss_dssp CCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEEEECCCCHHCCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEEEEC
T ss_conf 99278999659988999973898241398434089999999998875323686379676999178999987999999983
Q ss_pred CCCCCCCEE-EEEECC
Q ss_conf 886675214-687507
Q 004540 432 GTTELGRCE-IWFSTG 446 (746)
Q Consensus 432 ~~~elg~~E-~k~~T~ 446 (746)
..|+=-.++ +.+.|.
T Consensus 91 ~~G~g~~S~~v~~~T~ 106 (114)
T 1x4y_A 91 EGGESEFSNVMICETK 106 (114)
T ss_dssp TTCCCCCCCCEEEECC
T ss_pred CCCCCCCCCCEEEEEC
T ss_conf 8966998578999959
No 5
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=1.00 E-value=1 Score=64.46 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=70.6
Q ss_pred CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCC-CEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 6567417999841204899927679999986137987630487889999-244315773137525776602459998516
Q 004540 353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARP-TCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431 (746)
Q Consensus 353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~eP-t~~~~~p~~r~lvs~L~P~TEY~fkvvsF~ 431 (746)
||++-.+++.+++++|++|-+.... +.|.||.|.|+..... .++ ...+....+.+.|+||.|.|+|.|+|.+++
T Consensus 2 lp~P~~l~v~~~t~~Sv~lsW~~p~---~~i~~Y~v~y~~~~~~--~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~ 76 (98)
T 3tes_A 2 LPAPKNLVVSEVTEDSLRLSWTAPD---AAFDSFMIQYQESEKV--GEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVK 76 (98)
T ss_dssp BCCCEEEEEESCCSSCEEEEEECCT---TSCSEEEEEEEETTBC--SCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEEECCCC---CCCCEEEEEEEECCCC--CCEEEEECCCCCCEEEECCCCCCCEEEEEEEEEE
T ss_conf 8888761998538996999966986---7666699999989889--9569999289768999799899998999999996
Q ss_pred CCCCCCCEEEEEECC
Q ss_conf 886675214687507
Q 004540 432 GTTELGRCEIWFSTG 446 (746)
Q Consensus 432 ~~~elg~~E~k~~T~ 446 (746)
+.|+-........|.
T Consensus 77 ~~g~S~p~~~~~~~~ 91 (98)
T 3tes_A 77 GGHRSNPLSAEFTTG 91 (98)
T ss_dssp TTEEBCCEEEEEECS
T ss_pred CCCCCCCEEEEEECC
T ss_conf 996069999999728
No 6
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=1.00 E-value=1 Score=63.05 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=63.2
Q ss_pred CEEEE---EEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCC-E-EEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf 41799---98412048999276799999861379876304878-899992-4-431577313752577660245999851
Q 004540 357 NMVKF---EDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPT-C-TLFAPNTRFVVTGLCPATEYQFKVVSS 430 (746)
Q Consensus 357 ~~vrF---Eevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt-~-~~~~p~~r~lvs~L~P~TEY~fkvvsF 430 (746)
|.++. +.++++||.|-+.. ......|.||+++||..... -..+-. . +.....+.++|.||.|.|+|.|+|.+|
T Consensus 17 ~~v~l~~~~a~sstsi~vsW~~-~~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~ 95 (120)
T 1ujt_A 17 VLVRLHNPVVLTPTTVQVTWTV-DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPY 95 (120)
T ss_dssp CCEEECCCCCCBTTEEEEEEEE-SSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEE
T ss_pred CEEEEECCEECCCCEEEEEECC-CCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCCEEEEEEEEE
T ss_conf 2898562378467618999726-888970736999999999988887427888658982779979989999899999997
Q ss_pred CCCCCCCCEE-EEEECC
Q ss_conf 6886675214-687507
Q 004540 431 NGTTELGRCE-IWFSTG 446 (746)
Q Consensus 431 ~~~~elg~~E-~k~~T~ 446 (746)
+..|+=-.++ +.+.|.
T Consensus 96 n~~G~Gp~S~~v~~~T~ 112 (120)
T 1ujt_A 96 FNEFQGMDSESKTVRTT 112 (120)
T ss_dssp SSSCCCCCCCCEEEEEC
T ss_pred CCCCCCCCCCCEEEECC
T ss_conf 89835899888998799
No 7
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=1.00 E-value=1 Score=60.69 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=70.2
Q ss_pred CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf 65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540 353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG 432 (746)
Q Consensus 353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~ 432 (746)
.|.+..+.+..++.+|++|.+.........|.||+|.|+..... ......+....+.+.|.+|.|.|+|.|+|.+++.
T Consensus 7 ~P~~p~~~v~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 84 (107)
T 2dn7_A 7 GPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEA--RPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNR 84 (107)
T ss_dssp CCCCCEEEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCS--SCEEEEEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEEEEEECCCC--CCEEEEECCCCCEEEECCCCCCCEEEEEEEEECC
T ss_conf 99999574894589979999789988998626899999979999--8789984898468995998999989999999818
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 86675214687507
Q 004540 433 TTELGRCEIWFSTG 446 (746)
Q Consensus 433 ~~elg~~E~k~~T~ 446 (746)
.|.=..++..+.|.
T Consensus 85 ~G~g~~s~~~~~T~ 98 (107)
T 2dn7_A 85 AGLGEEFEKEIRTP 98 (107)
T ss_dssp TEEEEEEEEEEECC
T ss_pred CCCCCCEEEEEECC
T ss_conf 94167864578588
No 8
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=60.65 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCCEEEEEEEECEEEEEEECCC--CCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 6741799984120489992767--99999861379876304878-89999244315773137525776602459998516
Q 004540 355 VPNMVKFEDVRATSLTVVLGSE--DPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431 (746)
Q Consensus 355 ~~~~vrFEevt~tSv~vvL~~~--~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~ 431 (746)
++-.+++..+++++++|-++.. ......|.||+++|+..... ........+....+.+.|.||.|.|.|.|+|.+++
T Consensus 21 ~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 100 (134)
T 2edx_A 21 PPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHT 100 (134)
T ss_dssp CSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEE
T ss_pred CCCCCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEEEC
T ss_conf 99513998589997999962999657897456899999989898766278885089802899599889988999999984
Q ss_pred CCCCCCCEE-EEEECC
Q ss_conf 886675214-687507
Q 004540 432 GTTELGRCE-IWFSTG 446 (746)
Q Consensus 432 ~~~elg~~E-~k~~T~ 446 (746)
..|.=..++ +.+.|.
T Consensus 101 ~~G~g~~S~~~~~~T~ 116 (134)
T 2edx_A 101 DVGPGPESSPVLVRTD 116 (134)
T ss_dssp TTBCCCCCCCEEEECC
T ss_pred CCCCCCCCCCEEEECC
T ss_conf 8975999888996658
No 9
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=1.00 E-value=1 Score=60.60 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=69.1
Q ss_pred CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCC-CEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 67417999841204899927679999986137987630487889999-24431577313752577660245999851688
Q 004540 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARP-TCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT 433 (746)
Q Consensus 355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~eP-t~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~ 433 (746)
++-.+++.+++.+|++|-+.... ..|.||.|.|+..... .+. ...+....+.+.|.||.|.|+|.|+|.++++.
T Consensus 5 ~P~~l~v~~~t~~sv~lsW~~p~---~~i~~Y~v~y~~~~~~--~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 79 (104)
T 2rb8_A 5 APSQIEVKDVTDTTALITWMPPS---QPVDGFELTYGIKDVP--GDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD 79 (104)
T ss_dssp CCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEETTCT--TCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCCEEEEECCCEEEEEECCCC---CCCCEEEEEEEECCCC--CCEEEEECCCCCCEEEECCCCCCCEEEEEEEEEECC
T ss_conf 89703887734895899981998---7656699999977689--960899828984799928989998899999999399
Q ss_pred CCCCCEEEEEECCC
Q ss_conf 66752146875076
Q 004540 434 TELGRCEIWFSTGS 447 (746)
Q Consensus 434 ~elg~~E~k~~T~s 447 (746)
|.-......+.|.-
T Consensus 80 g~s~p~~~~~~T~~ 93 (104)
T 2rb8_A 80 MSSNPAKETFTTGL 93 (104)
T ss_dssp EECCCEEEEEECCC
T ss_pred CCCCCEEEEEECCC
T ss_conf 60777879998789
No 10
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=60.59 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 76567417999841204899927679999986137987630487889999244315773137525776602459998516
Q 004540 352 NVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431 (746)
Q Consensus 352 ~l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~ 431 (746)
.+.++-.+++.+++++||.|-+.........|.||.|.|+.....- ..-...+....+.+.|.||.|.|+|.|+|.+++
T Consensus 7 ~~~~P~~l~v~~~t~~Sv~lsW~~p~~~~g~i~~Y~v~y~~~~~~~-~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~ 85 (103)
T 3t04_D 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDS-PVQEFTVPGYYSTATISGLKPGVDYTITVYAYD 85 (103)
T ss_dssp CCCCCCSCEEEEEETTEEEEECTTTTTTSCCCCEEEEEEEETTCSS-CCEEEEEETTCCEEEECSCCTTCCEEEEEEEES
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCC-CCEEEECCCCCCEEEECCCCCCCEEEEEEEEEE
T ss_conf 3799953699766889799990698888986135999999899998-568998688728999689899999999999974
Q ss_pred C--CCC
Q ss_conf 8--866
Q 004540 432 G--TTE 435 (746)
Q Consensus 432 ~--~~e 435 (746)
. .|.
T Consensus 86 ~~~~G~ 91 (103)
T 3t04_D 86 TFFPGY 91 (103)
T ss_dssp CCCTTC
T ss_pred CCCCCC
T ss_conf 787787
Done!