Query 004541
Match_columns 746
No_of_seqs 483 out of 2557
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 1.5E-21 3.2E-26 202.1 16.4 120 88-211 1-121 (229)
2 PRK15347 two component system 99.8 6E-20 1.3E-24 221.6 23.1 198 2-208 550-812 (921)
3 PRK11091 aerobic respiration c 99.8 6.7E-20 1.4E-24 218.6 22.2 195 2-208 436-645 (779)
4 TIGR02956 TMAO_torS TMAO reduc 99.8 7.3E-20 1.6E-24 222.3 22.9 195 2-208 617-823 (968)
5 PRK11466 hybrid sensory histid 99.8 9.6E-20 2.1E-24 220.3 22.4 194 2-208 598-800 (914)
6 PRK10841 hybrid sensory kinase 99.8 4.1E-19 8.9E-24 216.2 23.7 121 86-210 800-921 (924)
7 PRK09959 hybrid sensory histid 99.8 7.4E-19 1.6E-23 218.6 22.2 196 2-208 870-1076(1197)
8 PRK11107 hybrid sensory histid 99.8 1E-18 2.2E-23 210.8 22.5 120 87-208 667-787 (919)
9 COG4753 Response regulator con 99.8 7.2E-19 1.6E-23 196.5 13.9 120 87-210 1-124 (475)
10 COG2204 AtoC Response regulato 99.8 2E-18 4.3E-23 193.2 16.7 121 87-211 4-125 (464)
11 PF00072 Response_reg: Respons 99.8 1E-17 2.2E-22 150.4 15.6 110 90-203 1-112 (112)
12 COG4565 CitB Response regulato 99.8 7.3E-18 1.6E-22 169.8 14.5 122 88-213 1-125 (224)
13 PRK13837 two-component VirA-li 99.8 4E-17 8.7E-22 196.8 23.3 197 2-209 613-815 (828)
14 COG4566 TtrR Response regulato 99.7 1.7E-17 3.6E-22 164.4 13.6 121 88-212 5-126 (202)
15 COG3437 Response regulator con 99.7 1.5E-17 3.2E-22 178.6 13.2 123 85-209 12-136 (360)
16 COG0784 CheY FOG: CheY-like re 99.7 1.2E-16 2.6E-21 146.9 17.2 120 86-209 4-127 (130)
17 KOG0519 Sensory transduction h 99.7 3.2E-17 6.8E-22 196.2 13.9 123 83-207 662-785 (786)
18 PLN03029 type-a response regul 99.7 3.6E-16 7.8E-21 160.8 16.9 124 86-209 7-149 (222)
19 COG2197 CitB Response regulato 99.7 3.9E-16 8.4E-21 159.8 16.2 118 88-209 1-121 (211)
20 PRK13557 histidine kinase; Pro 99.7 1.7E-15 3.7E-20 170.7 21.4 196 2-208 330-535 (540)
21 COG3706 PleD Response regulato 99.7 5.3E-16 1.1E-20 172.7 15.7 124 86-211 131-255 (435)
22 PRK10046 dpiA two-component re 99.7 2.7E-15 5.8E-20 153.5 17.4 121 87-211 4-127 (225)
23 PRK10816 DNA-binding transcrip 99.6 3.4E-15 7.5E-20 149.7 17.0 118 88-209 1-119 (223)
24 PRK11173 two-component respons 99.6 4.3E-15 9.4E-20 151.1 17.2 118 87-209 3-121 (237)
25 PRK10161 transcriptional regul 99.6 4.8E-15 1E-19 149.3 17.3 119 88-208 3-122 (229)
26 PRK10529 DNA-binding transcrip 99.6 4.8E-15 1E-19 148.6 17.2 117 88-209 2-119 (225)
27 PRK09836 DNA-binding transcrip 99.6 5.2E-15 1.1E-19 148.8 17.1 117 88-208 1-118 (227)
28 TIGR02154 PhoB phosphate regul 99.6 6.5E-15 1.4E-19 146.4 17.0 120 88-209 3-123 (226)
29 PRK10643 DNA-binding transcrip 99.6 8.1E-15 1.8E-19 145.6 17.5 119 88-210 1-120 (222)
30 PRK10766 DNA-binding transcrip 99.6 8.9E-15 1.9E-19 146.3 17.1 118 88-210 3-121 (221)
31 PRK10336 DNA-binding transcrip 99.6 1.3E-14 2.9E-19 144.0 16.8 118 88-209 1-119 (219)
32 PRK09468 ompR osmolarity respo 99.6 1.3E-14 2.9E-19 147.2 17.0 119 87-209 5-124 (239)
33 PRK10701 DNA-binding transcrip 99.6 1.8E-14 4E-19 146.5 17.1 117 88-209 2-119 (240)
34 PRK10430 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 148.3 17.2 120 88-209 2-124 (239)
35 PRK11083 DNA-binding response 99.6 2.1E-14 4.6E-19 143.2 16.7 119 87-209 3-122 (228)
36 TIGR03787 marine_sort_RR prote 99.6 2.7E-14 5.9E-19 143.3 17.2 117 89-209 2-121 (227)
37 PRK10955 DNA-binding transcrip 99.6 2.4E-14 5.3E-19 143.7 16.7 116 88-209 2-118 (232)
38 PRK13856 two-component respons 99.6 2.9E-14 6.3E-19 145.8 17.0 116 89-209 3-120 (241)
39 COG3947 Response regulator con 99.6 4.8E-15 1E-19 155.0 10.7 116 88-209 1-117 (361)
40 PRK11517 transcriptional regul 99.6 3.8E-14 8.3E-19 141.4 16.8 117 88-209 1-118 (223)
41 TIGR02875 spore_0_A sporulatio 99.6 3.4E-14 7.4E-19 147.9 16.6 120 87-208 2-124 (262)
42 CHL00148 orf27 Ycf27; Reviewed 99.6 6.3E-14 1.4E-18 141.4 17.7 119 86-209 5-124 (240)
43 PRK10840 transcriptional regul 99.6 5.5E-14 1.2E-18 142.2 16.3 118 87-208 3-126 (216)
44 PRK09581 pleD response regulat 99.6 1.8E-14 3.8E-19 159.1 13.3 120 86-208 154-274 (457)
45 TIGR01387 cztR_silR_copR heavy 99.6 8.6E-14 1.9E-18 137.8 16.6 116 90-209 1-117 (218)
46 PRK09958 DNA-binding transcrip 99.6 8.6E-14 1.9E-18 137.2 15.9 117 88-208 1-119 (204)
47 PRK09483 response regulator; P 99.5 1.4E-13 3.1E-18 136.9 16.3 118 88-209 2-122 (217)
48 PRK14084 two-component respons 99.5 2.2E-13 4.7E-18 140.0 16.7 116 88-209 1-119 (246)
49 PRK15115 response regulator Gl 99.5 1.5E-13 3.2E-18 154.3 16.4 120 86-209 4-124 (444)
50 PRK10923 glnG nitrogen regulat 99.5 2E-13 4.2E-18 154.4 17.4 119 87-209 3-122 (469)
51 PRK09935 transcriptional regul 99.5 3.2E-13 6.9E-18 133.0 16.5 119 87-209 3-124 (210)
52 PRK10365 transcriptional regul 99.5 1.4E-13 3E-18 153.9 15.2 120 86-209 4-124 (441)
53 PRK10610 chemotaxis regulatory 99.5 9.8E-13 2.1E-17 116.2 17.4 122 86-209 4-127 (129)
54 COG4567 Response regulator con 99.5 1.5E-13 3.2E-18 132.0 12.3 113 89-205 11-124 (182)
55 PRK15479 transcriptional regul 99.5 6.5E-13 1.4E-17 131.8 17.1 119 88-210 1-120 (221)
56 PRK10360 DNA-binding transcrip 99.5 4.4E-13 9.6E-18 131.3 15.6 114 88-208 2-118 (196)
57 PRK10710 DNA-binding transcrip 99.5 7.4E-13 1.6E-17 133.6 17.0 118 88-210 11-129 (240)
58 PRK11697 putative two-componen 99.5 4.9E-13 1.1E-17 136.3 15.6 115 88-209 2-119 (238)
59 PRK11361 acetoacetate metaboli 99.5 4.5E-13 9.7E-18 150.7 16.3 118 87-208 4-122 (457)
60 PRK12555 chemotaxis-specific m 99.5 5.8E-13 1.2E-17 144.9 15.8 115 88-207 1-129 (337)
61 TIGR02915 PEP_resp_reg putativ 99.5 5E-13 1.1E-17 150.0 15.8 113 90-208 1-119 (445)
62 TIGR01818 ntrC nitrogen regula 99.5 6.3E-13 1.4E-17 149.8 16.0 116 90-209 1-117 (463)
63 PRK09390 fixJ response regulat 99.5 1E-12 2.2E-17 127.3 14.7 119 87-209 3-122 (202)
64 PRK13435 response regulator; P 99.5 1.8E-12 3.9E-17 122.4 15.7 121 85-213 3-126 (145)
65 PRK09581 pleD response regulat 99.5 1.5E-12 3.2E-17 143.9 17.5 120 88-209 3-123 (457)
66 PRK00742 chemotaxis-specific m 99.4 1.5E-12 3.4E-17 142.3 16.0 104 86-194 2-110 (354)
67 PRK15369 two component system 99.4 6.4E-12 1.4E-16 122.2 16.2 119 86-208 2-123 (211)
68 PRK10403 transcriptional regul 99.4 6.6E-12 1.4E-16 123.3 15.8 118 87-208 6-126 (215)
69 PRK10651 transcriptional regul 99.4 1.3E-11 2.8E-16 121.5 16.5 119 86-208 5-126 (216)
70 PRK13558 bacterio-opsin activa 99.4 3.7E-12 8E-17 149.8 14.8 118 87-208 7-127 (665)
71 COG2201 CheB Chemotaxis respon 99.3 9.3E-12 2E-16 135.4 14.7 102 88-194 2-108 (350)
72 PRK10100 DNA-binding transcrip 99.3 1.3E-11 2.8E-16 127.1 14.0 115 86-209 9-128 (216)
73 PRK11475 DNA-binding transcrip 99.3 1.4E-11 3.1E-16 126.0 13.4 107 99-209 2-116 (207)
74 PRK09191 two-component respons 99.3 4.8E-11 1.1E-15 123.3 15.5 115 87-208 137-254 (261)
75 COG3707 AmiR Response regulato 99.3 3.6E-11 7.8E-16 120.2 12.6 122 86-212 4-127 (194)
76 cd00156 REC Signal receiver do 99.3 1E-10 2.2E-15 98.2 13.0 111 91-205 1-112 (113)
77 PRK15411 rcsA colanic acid cap 99.3 7E-11 1.5E-15 120.6 14.1 117 88-209 1-124 (207)
78 PRK10693 response regulator of 99.1 3.9E-10 8.3E-15 121.5 12.6 89 116-208 2-92 (303)
79 PRK15029 arginine decarboxylas 99.0 1.3E-09 2.7E-14 129.8 13.6 120 88-211 1-136 (755)
80 COG3279 LytT Response regulato 99.0 2.2E-09 4.7E-14 112.6 10.8 115 88-208 2-119 (244)
81 PRK10618 phosphotransfer inter 98.9 7.9E-09 1.7E-13 126.1 15.3 122 2-143 605-738 (894)
82 PRK11107 hybrid sensory histid 98.5 1.1E-06 2.4E-11 106.8 15.2 188 2-206 450-650 (919)
83 COG3706 PleD Response regulato 98.1 2.4E-06 5.3E-11 96.1 5.1 92 112-209 13-105 (435)
84 PF06490 FleQ: Flagellar regul 97.8 0.0001 2.2E-09 68.3 9.2 105 89-205 1-107 (109)
85 smart00448 REC cheY-homologous 97.6 0.00042 9E-09 50.2 7.9 54 88-143 1-55 (55)
86 PF06203 CCT: CCT motif; Inte 97.3 8.8E-05 1.9E-09 58.2 1.5 22 725-746 1-22 (45)
87 PRK02261 methylaspartate mutas 97.0 0.029 6.4E-07 54.2 15.0 118 86-207 2-135 (137)
88 cd02071 MM_CoA_mut_B12_BD meth 96.7 0.035 7.6E-07 52.2 13.4 111 89-203 1-121 (122)
89 TIGR00640 acid_CoA_mut_C methy 96.5 0.11 2.3E-06 50.1 14.9 110 94-207 13-128 (132)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.2 0.043 9.4E-07 51.3 10.4 107 100-209 6-115 (115)
91 cd02067 B12-binding B12 bindin 95.9 0.079 1.7E-06 49.2 10.6 94 94-191 10-109 (119)
92 TIGR01501 MthylAspMutase methy 95.3 0.33 7.2E-06 47.0 12.8 109 95-207 13-133 (134)
93 PRK15399 lysine decarboxylase 94.4 0.32 6.8E-06 58.8 12.2 118 88-211 1-126 (713)
94 PRK15400 lysine decarboxylase 94.0 0.39 8.5E-06 58.0 11.7 118 88-211 1-126 (714)
95 cd02072 Glm_B12_BD B12 binding 93.8 1.2 2.6E-05 42.9 12.4 105 95-203 11-127 (128)
96 COG2185 Sbm Methylmalonyl-CoA 93.8 1.5 3.2E-05 43.0 13.1 118 86-207 11-138 (143)
97 TIGR03815 CpaE_hom_Actino heli 93.6 0.2 4.4E-06 54.6 7.9 84 111-206 1-86 (322)
98 cd02070 corrinoid_protein_B12- 93.3 0.93 2E-05 46.4 11.7 99 88-191 83-191 (201)
99 COG4999 Uncharacterized domain 92.8 0.31 6.8E-06 46.1 6.6 107 85-202 9-121 (140)
100 PF09425 CCT_2: Divergent CCT 90.8 0.13 2.9E-06 36.2 1.4 20 724-743 3-22 (27)
101 cd02069 methionine_synthase_B1 90.4 2 4.3E-05 44.7 10.2 102 88-193 89-203 (213)
102 PRK03958 tRNA 2'-O-methylase; 89.7 5.7 0.00012 40.3 12.3 114 85-209 29-147 (176)
103 TIGR02370 pyl_corrinoid methyl 89.6 2.5 5.5E-05 43.2 10.1 92 94-190 95-192 (197)
104 COG0512 PabA Anthranilate/para 89.5 1 2.2E-05 46.1 7.0 76 88-170 2-82 (191)
105 PF10087 DUF2325: Uncharacteri 89.3 2.1 4.6E-05 38.6 8.4 90 89-181 1-93 (97)
106 PF02310 B12-binding: B12 bind 89.0 5.5 0.00012 36.5 11.1 92 96-192 13-112 (121)
107 PRK00043 thiE thiamine-phospha 88.8 7.1 0.00015 39.5 12.8 92 110-207 103-209 (212)
108 PRK09426 methylmalonyl-CoA mut 88.6 4.2 9E-05 49.6 12.6 118 87-208 582-709 (714)
109 cd04728 ThiG Thiazole synthase 88.2 3.6 7.9E-05 43.8 10.2 114 87-210 93-228 (248)
110 PRK00208 thiG thiazole synthas 87.4 4 8.7E-05 43.5 10.0 114 87-210 93-228 (250)
111 PF03602 Cons_hypoth95: Conser 85.7 3.4 7.3E-05 41.9 8.2 81 88-168 66-151 (183)
112 PF14097 SpoVAE: Stage V sporu 85.0 7 0.00015 39.4 9.7 83 90-172 3-95 (180)
113 PRK08385 nicotinate-nucleotide 83.7 9.6 0.00021 41.4 11.0 96 89-189 156-257 (278)
114 COG5002 VicK Signal transducti 83.0 1.8 3.8E-05 48.2 5.1 61 2-68 380-451 (459)
115 PRK09303 adaptive-response sen 82.1 1.6 3.4E-05 48.7 4.5 58 2-66 311-378 (380)
116 PRK06774 para-aminobenzoate sy 80.8 3 6.6E-05 42.1 5.6 76 90-170 2-80 (191)
117 PRK01130 N-acetylmannosamine-6 80.8 23 0.00049 36.5 12.2 87 99-191 106-202 (221)
118 TIGR00566 trpG_papA glutamine 80.4 4.6 0.0001 40.8 6.8 87 90-185 2-91 (188)
119 PF01408 GFO_IDH_MocA: Oxidore 79.7 21 0.00045 32.5 10.4 106 88-208 1-112 (120)
120 PRK10604 sensor protein RstB; 79.5 2.8 6E-05 47.4 5.4 60 2-68 355-426 (433)
121 PRK07649 para-aminobenzoate/an 79.5 3.5 7.7E-05 42.1 5.6 88 90-186 2-92 (195)
122 PRK05703 flhF flagellar biosyn 79.4 21 0.00046 41.0 12.4 105 86-191 250-365 (424)
123 cd02065 B12-binding_like B12 b 79.1 9.7 0.00021 34.9 8.0 73 94-170 10-88 (125)
124 PRK12724 flagellar biosynthesi 78.9 23 0.0005 40.8 12.3 104 86-191 251-368 (432)
125 cd02068 radical_SAM_B12_BD B12 78.6 15 0.00033 34.3 9.3 104 98-205 3-110 (127)
126 cd01948 EAL EAL domain. This d 77.7 9.2 0.0002 38.7 8.1 91 102-195 136-238 (240)
127 PF02254 TrkA_N: TrkA-N domain 77.6 32 0.0007 31.1 10.9 95 86-190 20-115 (116)
128 PF05690 ThiG: Thiazole biosyn 77.5 23 0.0005 37.7 10.9 114 88-208 94-226 (247)
129 TIGR00095 RNA methyltransferas 77.4 22 0.00047 36.1 10.6 82 89-170 74-159 (189)
130 PRK13566 anthranilate synthase 77.1 9.9 0.00021 46.5 9.3 81 83-170 522-606 (720)
131 PRK00278 trpC indole-3-glycero 76.3 50 0.0011 35.4 13.4 96 90-190 138-239 (260)
132 CHL00162 thiG thiamin biosynth 75.8 63 0.0014 34.9 13.6 115 88-210 108-242 (267)
133 PRK08007 para-aminobenzoate sy 75.7 5.6 0.00012 40.2 5.8 88 90-186 2-92 (187)
134 PRK06895 putative anthranilate 75.5 11 0.00023 38.1 7.8 76 88-170 2-80 (190)
135 PRK05637 anthranilate synthase 75.4 10 0.00022 39.2 7.7 78 88-170 2-81 (208)
136 cd00452 KDPG_aldolase KDPG and 75.0 21 0.00046 36.0 9.8 80 105-191 91-171 (190)
137 PRK10364 sensor protein ZraS; 74.9 4.9 0.00011 45.5 5.7 59 2-67 386-450 (457)
138 cd00331 IGPS Indole-3-glycerol 74.8 50 0.0011 33.9 12.6 80 107-190 117-200 (217)
139 PRK05458 guanosine 5'-monophos 74.4 52 0.0011 36.6 13.3 97 89-191 113-230 (326)
140 cd04729 NanE N-acetylmannosami 74.1 42 0.0009 34.6 11.9 83 103-191 114-206 (219)
141 TIGR02026 BchE magnesium-proto 74.1 33 0.00071 40.1 12.3 105 96-205 21-135 (497)
142 COG4251 Bacteriophytochrome (l 73.9 5.1 0.00011 47.7 5.5 61 2-68 675-744 (750)
143 COG0742 N6-adenine-specific me 73.5 18 0.00039 37.1 8.8 56 87-143 66-125 (187)
144 PRK15053 dpiB sensor histidine 73.3 5.3 0.00011 46.1 5.6 59 2-67 474-541 (545)
145 TIGR03151 enACPred_II putative 73.3 28 0.00061 38.2 10.9 83 103-191 101-190 (307)
146 PLN02335 anthranilate synthase 73.0 9.1 0.0002 39.9 6.7 92 86-186 17-111 (222)
147 PRK11086 sensory histidine kin 73.0 6.1 0.00013 45.2 5.9 59 2-67 473-537 (542)
148 PRK14974 cell division protein 72.8 30 0.00065 38.6 11.0 103 86-191 167-287 (336)
149 PRK11359 cyclic-di-GMP phospho 72.8 27 0.0006 42.2 11.7 102 101-205 681-794 (799)
150 cd04724 Tryptophan_synthase_al 72.6 36 0.00078 35.9 11.2 56 147-205 64-125 (242)
151 COG0157 NadC Nicotinate-nucleo 72.5 17 0.00036 39.5 8.5 93 89-188 160-259 (280)
152 PRK11006 phoR phosphate regulo 72.3 3.8 8.2E-05 46.0 4.0 58 2-66 355-424 (430)
153 PRK12704 phosphodiesterase; Pr 72.0 6.4 0.00014 46.4 5.8 45 164-208 251-297 (520)
154 PLN02871 UDP-sulfoquinovose:DA 71.9 38 0.00081 38.8 12.0 107 87-207 290-399 (465)
155 cd04723 HisA_HisF Phosphoribos 71.7 38 0.00083 35.5 11.0 69 117-190 145-217 (233)
156 cd00564 TMP_TenI Thiamine mono 71.7 38 0.00083 33.2 10.6 73 111-190 95-177 (196)
157 TIGR00693 thiE thiamine-phosph 71.6 30 0.00065 34.7 9.9 68 116-189 102-178 (196)
158 cd04726 KGPDC_HPS 3-Keto-L-gul 71.3 66 0.0014 32.3 12.3 95 89-190 79-185 (202)
159 TIGR01037 pyrD_sub1_fam dihydr 71.3 49 0.0011 35.7 12.1 60 148-210 223-288 (300)
160 PRK14722 flhF flagellar biosyn 71.0 31 0.00066 39.1 10.7 89 88-178 168-263 (374)
161 PF09936 Methyltrn_RNA_4: SAM- 70.7 40 0.00088 34.5 10.3 100 88-195 43-162 (185)
162 CHL00101 trpG anthranilate syn 70.6 9.7 0.00021 38.5 6.2 76 90-170 2-80 (190)
163 TIGR00007 phosphoribosylformim 70.6 29 0.00064 35.8 9.8 67 119-190 146-217 (230)
164 cd04730 NPD_like 2-Nitropropan 70.5 64 0.0014 33.2 12.3 95 89-191 82-185 (236)
165 PRK07695 transcriptional regul 70.5 1E+02 0.0022 31.3 13.6 85 116-207 101-198 (201)
166 smart00052 EAL Putative diguan 70.4 23 0.00049 35.9 8.9 91 102-195 137-239 (241)
167 PRK10815 sensor protein PhoQ; 69.6 7.2 0.00016 45.1 5.6 58 2-66 414-479 (485)
168 PF01729 QRPTase_C: Quinolinat 69.4 27 0.00059 35.1 8.9 95 89-189 52-153 (169)
169 PRK10558 alpha-dehydro-beta-de 69.3 54 0.0012 35.1 11.7 101 101-204 8-112 (256)
170 COG0313 Predicted methyltransf 69.2 42 0.0009 36.5 10.6 113 85-207 28-154 (275)
171 PRK11360 sensory histidine kin 69.0 6.1 0.00013 45.2 4.8 58 2-66 539-602 (607)
172 PRK05749 3-deoxy-D-manno-octul 68.6 38 0.00083 38.0 11.0 110 86-207 261-387 (425)
173 PRK14723 flhF flagellar biosyn 68.5 46 0.001 41.1 12.1 102 88-191 216-331 (767)
174 TIGR01334 modD putative molybd 68.0 20 0.00044 38.9 8.1 94 89-188 158-260 (277)
175 PRK10128 2-keto-3-deoxy-L-rham 67.9 62 0.0013 35.0 11.8 99 102-203 8-110 (267)
176 PRK11889 flhF flagellar biosyn 67.9 66 0.0014 37.1 12.4 108 85-193 267-387 (436)
177 COG2205 KdpD Osmosensitive K+ 67.8 6.9 0.00015 47.9 5.0 60 2-68 813-882 (890)
178 PRK06543 nicotinate-nucleotide 67.7 45 0.00097 36.4 10.7 91 89-188 161-262 (281)
179 PRK07259 dihydroorotate dehydr 67.3 61 0.0013 35.1 11.8 59 148-209 223-287 (301)
180 PRK10549 signal transduction h 67.2 8.3 0.00018 43.3 5.3 59 2-67 390-460 (466)
181 PRK05581 ribulose-phosphate 3- 66.9 48 0.001 33.7 10.4 99 103-204 101-216 (220)
182 PF01596 Methyltransf_3: O-met 66.6 19 0.00042 37.2 7.4 54 88-141 71-129 (205)
183 PRK12726 flagellar biosynthesi 66.5 73 0.0016 36.5 12.3 120 86-206 233-366 (407)
184 PF07688 KaiA: KaiA domain; I 66.4 24 0.00052 37.9 8.0 114 89-209 2-120 (283)
185 PRK10490 sensor protein KdpD; 66.1 8.1 0.00018 48.4 5.4 59 2-67 816-884 (895)
186 cd03813 GT1_like_3 This family 65.9 48 0.001 38.1 11.3 108 86-207 323-441 (475)
187 PRK05670 anthranilate synthase 65.8 17 0.00036 36.7 6.7 89 90-186 2-92 (189)
188 PRK13111 trpA tryptophan synth 65.4 20 0.00044 38.4 7.5 57 147-205 76-138 (258)
189 TIGR03088 stp2 sugar transfera 65.0 45 0.00097 36.3 10.4 107 87-207 229-337 (374)
190 PRK11840 bifunctional sulfur c 64.7 35 0.00076 37.9 9.2 115 88-209 168-301 (326)
191 PRK13125 trpA tryptophan synth 64.7 81 0.0017 33.3 11.8 89 99-192 117-215 (244)
192 PRK05567 inosine 5'-monophosph 64.7 77 0.0017 37.0 12.7 102 86-190 239-359 (486)
193 PTZ00314 inosine-5'-monophosph 64.5 77 0.0017 37.2 12.6 99 87-191 253-373 (495)
194 TIGR00064 ftsY signal recognit 64.3 55 0.0012 35.3 10.6 103 85-189 98-223 (272)
195 PRK07896 nicotinate-nucleotide 64.1 32 0.0007 37.6 8.8 94 89-188 172-271 (289)
196 PRK12723 flagellar biosynthesi 63.8 76 0.0017 36.2 12.0 120 86-207 205-337 (388)
197 TIGR02855 spore_yabG sporulati 63.7 41 0.00089 36.5 9.2 102 87-193 104-227 (283)
198 PRK07765 para-aminobenzoate sy 63.4 22 0.00048 36.8 7.2 79 88-170 1-84 (214)
199 PF05582 Peptidase_U57: YabG p 63.3 35 0.00076 37.2 8.7 102 87-193 105-228 (287)
200 TIGR03239 GarL 2-dehydro-3-deo 63.2 74 0.0016 33.9 11.2 84 117-203 19-104 (249)
201 KOG1562 Spermidine synthase [A 62.8 20 0.00043 39.4 6.8 62 89-152 147-215 (337)
202 COG2200 Rtn c-di-GMP phosphodi 62.8 53 0.0012 34.9 10.1 115 87-204 121-251 (256)
203 PLN02274 inosine-5'-monophosph 62.8 94 0.002 36.7 12.9 98 87-190 260-379 (505)
204 PRK06731 flhF flagellar biosyn 62.7 69 0.0015 34.7 11.0 102 87-190 103-218 (270)
205 PRK08857 para-aminobenzoate sy 62.7 16 0.00035 37.0 5.9 86 90-185 2-91 (193)
206 COG2022 ThiG Uncharacterized e 62.6 68 0.0015 34.2 10.4 113 88-207 101-232 (262)
207 COG0626 MetC Cystathionine bet 62.5 35 0.00076 39.0 9.0 97 87-189 102-205 (396)
208 PRK07428 nicotinate-nucleotide 62.4 35 0.00076 37.3 8.7 95 89-189 168-269 (288)
209 PRK05718 keto-hydroxyglutarate 62.4 95 0.0021 32.4 11.6 95 104-204 9-106 (212)
210 PF00534 Glycos_transf_1: Glyc 62.3 90 0.002 29.7 10.9 111 85-209 45-159 (172)
211 PRK13587 1-(5-phosphoribosyl)- 62.3 36 0.00079 35.8 8.6 68 119-190 149-220 (234)
212 cd03820 GT1_amsD_like This fam 62.3 93 0.002 31.9 11.7 107 87-207 209-318 (348)
213 PRK15484 lipopolysaccharide 1, 61.8 1.5E+02 0.0031 33.1 13.8 108 87-207 224-343 (380)
214 PF02518 HATPase_c: Histidine 61.7 9.6 0.00021 34.2 3.7 57 2-65 43-110 (111)
215 cd03823 GT1_ExpE7_like This fa 61.6 1.1E+02 0.0025 31.8 12.3 65 134-207 263-328 (359)
216 PLN02274 inosine-5'-monophosph 61.5 44 0.00096 39.3 9.9 67 119-190 248-316 (505)
217 TIGR02311 HpaI 2,4-dihydroxyhe 61.4 96 0.0021 33.0 11.7 87 116-205 18-106 (249)
218 PRK04180 pyridoxal biosynthesi 61.3 37 0.00079 37.2 8.5 62 146-210 190-258 (293)
219 PF06073 DUF934: Bacterial pro 61.3 70 0.0015 30.2 9.3 75 132-208 18-95 (110)
220 cd03313 enolase Enolase: Enola 61.2 53 0.0011 37.6 10.3 107 94-204 210-348 (408)
221 PRK05848 nicotinate-nucleotide 60.9 79 0.0017 34.3 11.0 95 89-189 154-255 (273)
222 TIGR00262 trpA tryptophan synt 60.9 85 0.0018 33.6 11.2 57 147-205 74-136 (256)
223 PRK04302 triosephosphate isome 60.5 1.6E+02 0.0035 30.5 13.0 82 105-191 108-202 (223)
224 COG1856 Uncharacterized homolo 60.4 62 0.0014 34.4 9.6 99 92-194 118-254 (275)
225 cd05212 NAD_bind_m-THF_DH_Cycl 60.3 29 0.00064 33.8 7.0 55 83-144 24-83 (140)
226 PRK10755 sensor protein BasS/P 60.2 12 0.00027 40.6 4.9 58 2-66 285-351 (356)
227 PRK06978 nicotinate-nucleotide 60.2 48 0.0011 36.4 9.3 91 89-188 178-274 (294)
228 COG0643 CheA Chemotaxis protei 60.0 9.6 0.00021 46.6 4.3 35 27-67 541-575 (716)
229 PRK03708 ppnK inorganic polyph 59.8 57 0.0012 35.4 9.7 99 88-208 1-112 (277)
230 PRK04148 hypothetical protein; 59.8 19 0.00042 35.0 5.5 94 86-197 16-114 (134)
231 PRK13143 hisH imidazole glycer 59.7 38 0.00082 34.6 8.0 44 88-139 1-44 (200)
232 cd04962 GT1_like_5 This family 59.6 77 0.0017 34.0 10.9 106 88-207 228-335 (371)
233 PRK14098 glycogen synthase; Pr 59.3 1.1E+02 0.0023 35.8 12.6 113 87-208 336-451 (489)
234 PRK05458 guanosine 5'-monophos 59.3 28 0.0006 38.7 7.4 66 120-189 99-166 (326)
235 PRK10867 signal recognition pa 59.1 92 0.002 36.1 11.7 83 87-172 129-225 (433)
236 PRK06559 nicotinate-nucleotide 58.6 55 0.0012 35.9 9.3 91 89-188 169-266 (290)
237 TIGR00735 hisF imidazoleglycer 58.6 91 0.002 33.0 10.9 80 119-203 156-247 (254)
238 cd03114 ArgK-like The function 58.5 38 0.00082 33.0 7.5 44 120-171 80-123 (148)
239 TIGR02938 nifL_nitrog nitrogen 58.4 4.6 0.0001 44.9 1.2 18 48-65 477-494 (494)
240 PRK09016 quinolinate phosphori 58.3 36 0.00078 37.4 7.9 91 89-188 181-277 (296)
241 PRK10669 putative cation:proto 58.3 76 0.0016 37.5 11.3 109 86-207 439-548 (558)
242 cd01424 MGS_CPS_II Methylglyox 58.1 86 0.0019 28.6 9.4 25 94-118 9-33 (110)
243 TIGR00343 pyridoxal 5'-phospha 58.1 71 0.0015 34.9 9.9 61 146-209 184-251 (287)
244 cd04740 DHOD_1B_like Dihydroor 58.0 1.2E+02 0.0026 32.6 12.0 59 148-209 220-284 (296)
245 PRK00811 spermidine synthase; 57.8 70 0.0015 34.6 10.1 55 87-144 100-162 (283)
246 PF07652 Flavi_DEAD: Flaviviru 57.6 26 0.00057 34.7 6.1 86 86-171 32-135 (148)
247 PRK06843 inosine 5-monophospha 57.5 1.5E+02 0.0033 34.1 13.0 102 86-190 164-284 (404)
248 PRK06552 keto-hydroxyglutarate 57.3 1.2E+02 0.0025 31.8 11.2 96 105-203 8-106 (213)
249 KOG1601 GATA-4/5/6 transcripti 57.3 1.3 2.9E-05 45.6 -3.1 74 132-205 62-136 (340)
250 PRK10060 RNase II stability mo 57.2 71 0.0015 38.6 11.0 103 100-205 543-657 (663)
251 PRK06096 molybdenum transport 57.0 40 0.00086 36.9 8.0 95 89-189 159-262 (284)
252 PF03060 NMO: Nitronate monoox 57.0 84 0.0018 34.7 10.7 83 103-191 128-219 (330)
253 PLN02591 tryptophan synthase 57.0 1.1E+02 0.0023 32.9 11.0 58 146-206 65-128 (250)
254 PRK09470 cpxA two-component se 56.8 14 0.00031 41.2 4.8 58 2-66 389-458 (461)
255 PRK10909 rsmD 16S rRNA m(2)G96 56.6 90 0.0019 32.1 10.2 82 88-172 77-161 (199)
256 TIGR01815 TrpE-clade3 anthrani 56.4 42 0.00091 41.2 8.9 80 84-170 513-596 (717)
257 cd06346 PBP1_ABC_ligand_bindin 56.3 1.9E+02 0.004 30.9 13.1 82 89-175 139-231 (312)
258 COG0642 BaeS Signal transducti 56.3 21 0.00045 36.7 5.5 60 2-68 265-332 (336)
259 TIGR01163 rpe ribulose-phospha 56.3 41 0.00088 33.9 7.6 88 100-191 93-193 (210)
260 cd04722 TIM_phosphate_binding 56.3 80 0.0017 30.4 9.4 87 99-190 101-198 (200)
261 PRK12727 flagellar biosynthesi 56.2 87 0.0019 37.4 11.0 85 87-174 380-471 (559)
262 cd03819 GT1_WavL_like This fam 56.2 1.9E+02 0.0042 30.5 13.1 108 87-207 216-329 (355)
263 TIGR00959 ffh signal recogniti 56.1 91 0.002 36.0 11.1 84 86-172 127-224 (428)
264 TIGR01761 thiaz-red thiazoliny 56.1 64 0.0014 36.1 9.6 104 87-207 3-113 (343)
265 cd04732 HisA HisA. Phosphorib 55.6 78 0.0017 32.6 9.7 67 119-190 147-218 (234)
266 PRK00748 1-(5-phosphoribosyl)- 55.5 58 0.0013 33.6 8.7 67 119-190 147-219 (233)
267 TIGR03449 mycothiol_MshA UDP-N 55.4 1.7E+02 0.0036 32.3 12.8 107 88-207 253-367 (405)
268 COG0673 MviM Predicted dehydro 54.9 1.4E+02 0.0031 32.2 12.0 107 86-205 2-114 (342)
269 cd01572 QPRTase Quinolinate ph 54.4 1.1E+02 0.0024 33.0 10.9 91 89-188 154-251 (268)
270 cd03801 GT1_YqgM_like This fam 54.4 1.8E+02 0.0039 29.8 12.2 107 87-207 230-340 (374)
271 cd03825 GT1_wcfI_like This fam 54.0 41 0.00088 35.7 7.5 74 88-168 1-82 (365)
272 cd01568 QPRTase_NadC Quinolina 53.9 91 0.002 33.6 10.1 93 89-189 153-253 (269)
273 PRK10742 putative methyltransf 53.9 1.1E+02 0.0023 33.1 10.3 56 86-144 109-176 (250)
274 cd08185 Fe-ADH1 Iron-containin 53.8 77 0.0017 35.6 10.0 63 88-154 26-102 (380)
275 PRK09490 metH B12-dependent me 53.7 61 0.0013 42.2 10.0 99 88-190 752-863 (1229)
276 PRK07114 keto-hydroxyglutarate 53.7 1.5E+02 0.0034 31.2 11.4 85 116-203 22-109 (222)
277 PF01081 Aldolase: KDPG and KH 53.6 40 0.00088 34.8 7.0 56 142-201 41-96 (196)
278 PRK10416 signal recognition pa 53.5 1.5E+02 0.0032 32.8 11.9 103 86-190 141-266 (318)
279 PRK09467 envZ osmolarity senso 53.5 16 0.00036 40.6 4.6 58 2-66 367-434 (435)
280 PRK02083 imidazole glycerol ph 53.4 1.5E+02 0.0032 31.3 11.5 79 119-203 154-245 (253)
281 PRK03659 glutathione-regulated 53.4 78 0.0017 38.0 10.4 95 86-190 422-517 (601)
282 COG4191 Signal transduction hi 53.3 18 0.0004 42.9 4.9 57 2-65 537-601 (603)
283 COG4122 Predicted O-methyltran 53.1 37 0.0008 35.7 6.7 65 88-154 85-155 (219)
284 TIGR00417 speE spermidine synt 53.1 84 0.0018 33.6 9.7 54 88-144 97-157 (270)
285 PRK15320 transcriptional activ 52.8 33 0.00071 35.8 6.0 97 89-191 3-102 (251)
286 cd01573 modD_like ModD; Quinol 52.4 90 0.002 33.8 9.8 69 115-190 188-257 (272)
287 cd08179 NADPH_BDH NADPH-depend 52.2 1E+02 0.0022 34.7 10.5 63 88-154 24-100 (375)
288 cd06338 PBP1_ABC_ligand_bindin 52.1 1.9E+02 0.0041 31.1 12.4 78 88-170 142-230 (345)
289 TIGR02082 metH 5-methyltetrahy 51.7 96 0.0021 40.4 11.3 101 88-192 733-846 (1178)
290 PRK13560 hypothetical protein; 51.5 12 0.00025 45.0 3.2 35 24-66 770-804 (807)
291 TIGR01303 IMP_DH_rel_1 IMP deh 50.8 95 0.0021 36.3 10.3 67 118-189 224-292 (475)
292 PRK07107 inosine 5-monophospha 50.7 85 0.0018 37.0 9.9 101 86-189 253-379 (502)
293 PRK04457 spermidine synthase; 50.4 1.1E+02 0.0025 32.6 10.1 68 87-157 90-166 (262)
294 cd06329 PBP1_SBP_like_3 Peripl 50.3 1.6E+02 0.0035 31.8 11.6 78 88-170 144-235 (342)
295 PF08047 His_leader: Histidine 50.2 6.5 0.00014 24.2 0.4 6 606-611 6-11 (16)
296 cd00886 MogA_MoaB MogA_MoaB fa 49.9 37 0.0008 33.1 5.9 44 98-141 20-69 (152)
297 PRK07028 bifunctional hexulose 49.9 2.9E+02 0.0062 31.7 13.9 103 101-209 97-213 (430)
298 cd03115 SRP The signal recogni 49.9 97 0.0021 30.2 8.9 86 86-174 27-126 (173)
299 cd03818 GT1_ExpC_like This fam 49.9 1.3E+02 0.0027 33.4 10.8 77 119-208 290-366 (396)
300 KOG3040 Predicted sugar phosph 49.5 41 0.00089 35.4 6.2 76 86-169 38-118 (262)
301 TIGR01425 SRP54_euk signal rec 49.4 1.4E+02 0.0029 34.7 11.0 54 85-141 126-190 (429)
302 TIGR00736 nifR3_rel_arch TIM-b 49.4 83 0.0018 33.3 8.7 93 92-189 116-218 (231)
303 PRK02155 ppnK NAD(+)/NADH kina 49.1 1.6E+02 0.0034 32.2 11.1 101 89-208 7-119 (291)
304 cd00381 IMPDH IMPDH: The catal 48.9 2.5E+02 0.0055 31.1 12.8 101 86-189 105-224 (325)
305 cd02809 alpha_hydroxyacid_oxid 48.8 2.5E+02 0.0055 30.5 12.7 89 101-193 162-259 (299)
306 TIGR01142 purT phosphoribosylg 48.7 1.7E+02 0.0038 32.3 11.7 22 118-141 49-70 (380)
307 TIGR01182 eda Entner-Doudoroff 48.5 1.5E+02 0.0032 30.9 10.2 54 145-202 44-97 (204)
308 PRK01911 ppnK inorganic polyph 48.4 1.7E+02 0.0036 32.1 11.1 102 89-209 2-121 (292)
309 PRK08883 ribulose-phosphate 3- 48.1 81 0.0017 33.0 8.4 102 101-206 96-215 (220)
310 cd01571 NAPRTase_B Nicotinate 47.7 1.5E+02 0.0033 32.5 10.8 89 99-188 170-270 (302)
311 PRK03372 ppnK inorganic polyph 47.6 1.8E+02 0.004 32.1 11.3 102 89-209 7-129 (306)
312 TIGR03704 PrmC_rel_meth putati 47.6 1.9E+02 0.0041 30.6 11.2 52 87-141 110-161 (251)
313 PRK05742 nicotinate-nucleotide 47.3 1.2E+02 0.0027 32.9 9.8 65 116-189 195-259 (277)
314 TIGR00262 trpA tryptophan synt 47.2 1.9E+02 0.0041 31.0 11.1 100 90-192 119-228 (256)
315 TIGR02149 glgA_Coryne glycogen 47.2 2E+02 0.0044 31.1 11.8 96 99-207 244-351 (388)
316 PF00478 IMPDH: IMP dehydrogen 47.2 77 0.0017 35.7 8.4 68 119-191 108-177 (352)
317 PRK00771 signal recognition pa 47.1 2.4E+02 0.0053 32.7 12.7 55 86-141 122-183 (437)
318 cd08187 BDH Butanol dehydrogen 47.0 1.1E+02 0.0025 34.3 9.9 80 87-170 28-136 (382)
319 PRK09922 UDP-D-galactose:(gluc 46.6 2E+02 0.0044 31.4 11.6 54 147-209 271-325 (359)
320 PRK01231 ppnK inorganic polyph 46.4 1.6E+02 0.0034 32.4 10.5 101 89-208 6-118 (295)
321 TIGR00308 TRM1 tRNA(guanine-26 46.3 44 0.00095 37.8 6.5 113 88-208 70-190 (374)
322 PRK09860 putative alcohol dehy 46.2 1.4E+02 0.003 33.8 10.4 64 88-155 32-108 (383)
323 PRK15427 colanic acid biosynth 46.1 3.1E+02 0.0068 30.9 13.4 107 87-207 253-369 (406)
324 cd06382 PBP1_iGluR_Kainate N-t 46.1 1.9E+02 0.0042 30.9 11.3 83 88-173 130-220 (327)
325 PRK05718 keto-hydroxyglutarate 46.1 2.7E+02 0.0059 29.1 11.8 95 89-192 18-136 (212)
326 PRK11572 copper homeostasis pr 45.9 1.3E+02 0.0028 32.4 9.5 90 95-189 98-196 (248)
327 COG3836 HpcH 2,4-dihydroxyhept 45.9 1.1E+02 0.0025 32.7 8.9 98 102-202 7-107 (255)
328 PRK04184 DNA topoisomerase VI 45.7 1E+02 0.0022 36.7 9.5 103 2-110 80-199 (535)
329 cd00758 MoCF_BD MoCF_BD: molyb 45.7 67 0.0014 30.5 6.8 45 97-141 18-66 (133)
330 PLN02460 indole-3-glycerol-pho 45.7 2.3E+02 0.0049 31.9 11.7 90 99-190 218-316 (338)
331 PRK14607 bifunctional glutamin 45.6 41 0.00089 39.8 6.4 89 89-186 1-93 (534)
332 PRK06106 nicotinate-nucleotide 45.5 1.5E+02 0.0032 32.5 10.0 91 89-188 166-263 (281)
333 PRK13146 hisH imidazole glycer 45.5 76 0.0016 32.7 7.6 44 88-139 2-47 (209)
334 COG1927 Mtd Coenzyme F420-depe 45.4 1.8E+02 0.0039 30.7 10.0 79 109-192 29-117 (277)
335 PLN02775 Probable dihydrodipic 45.3 3E+02 0.0066 30.2 12.4 71 118-195 66-138 (286)
336 cd00429 RPE Ribulose-5-phospha 45.3 66 0.0014 32.2 7.1 83 104-190 98-193 (211)
337 PRK07206 hypothetical protein; 45.0 2.9E+02 0.0062 31.0 12.8 21 187-207 148-180 (416)
338 PLN02591 tryptophan synthase 45.0 1.9E+02 0.0042 30.9 10.7 99 89-192 109-219 (250)
339 PLN02366 spermidine synthase 44.9 1.3E+02 0.0029 33.0 9.8 67 88-156 116-194 (308)
340 cd06388 PBP1_iGluR_AMPA_GluR4 44.8 1.5E+02 0.0033 33.1 10.4 55 101-158 141-202 (371)
341 PF00218 IGPS: Indole-3-glycer 44.8 1.9E+02 0.0041 31.1 10.6 87 101-191 148-238 (254)
342 smart00852 MoCF_biosynth Proba 44.7 63 0.0014 30.6 6.4 45 97-141 17-65 (135)
343 PRK06015 keto-hydroxyglutarate 44.7 1.6E+02 0.0034 30.7 9.7 28 172-200 64-91 (201)
344 PRK11100 sensory histidine kin 44.7 33 0.00071 38.2 5.2 58 2-66 406-474 (475)
345 PLN00191 enolase 44.4 1.5E+02 0.0032 34.6 10.5 108 93-204 239-380 (457)
346 PRK09140 2-dehydro-3-deoxy-6-p 44.3 1.7E+02 0.0038 30.2 10.0 96 104-203 4-101 (206)
347 PF02581 TMP-TENI: Thiamine mo 44.3 1.6E+02 0.0035 29.3 9.6 80 103-189 88-175 (180)
348 PRK07239 bifunctional uroporph 43.8 2.3E+02 0.0049 31.8 11.7 111 83-204 7-137 (381)
349 COG0134 TrpC Indole-3-glycerol 43.8 2.9E+02 0.0062 29.9 11.7 87 101-191 146-236 (254)
350 PF04131 NanE: Putative N-acet 43.6 58 0.0013 33.6 6.2 69 111-190 45-117 (192)
351 cd06342 PBP1_ABC_LIVBP_like Ty 43.5 2.9E+02 0.0063 29.3 12.0 76 89-169 137-223 (334)
352 PLN02316 synthase/transferase 43.5 2.5E+02 0.0054 36.2 12.9 71 134-209 920-999 (1036)
353 TIGR01302 IMP_dehydrog inosine 43.4 2.7E+02 0.0059 32.2 12.4 102 86-190 235-355 (450)
354 PRK08745 ribulose-phosphate 3- 43.4 1.5E+02 0.0033 31.2 9.5 102 101-205 100-218 (223)
355 TIGR01859 fruc_bis_ald_ fructo 43.2 2.9E+02 0.0064 30.0 12.0 69 117-191 152-230 (282)
356 cd06341 PBP1_ABC_ligand_bindin 43.1 3.2E+02 0.0069 29.3 12.4 73 99-176 149-228 (341)
357 cd08181 PPD-like 1,3-propanedi 43.0 1.8E+02 0.004 32.3 10.7 63 88-154 26-102 (357)
358 PF14606 Lipase_GDSL_3: GDSL-l 42.9 34 0.00074 34.8 4.5 87 109-210 31-132 (178)
359 cd01748 GATase1_IGP_Synthase T 42.7 69 0.0015 32.4 6.7 42 90-139 1-42 (198)
360 PTZ00170 D-ribulose-5-phosphat 42.7 87 0.0019 32.8 7.7 104 100-208 103-223 (228)
361 TIGR00734 hisAF_rel hisA/hisF 42.7 1.3E+02 0.0029 31.3 9.0 67 119-190 142-212 (221)
362 PLN02823 spermine synthase 42.7 75 0.0016 35.5 7.5 54 87-143 127-187 (336)
363 PLN02716 nicotinate-nucleotide 42.6 1E+02 0.0022 34.1 8.4 96 89-187 172-286 (308)
364 cd04726 KGPDC_HPS 3-Keto-L-gul 42.2 1E+02 0.0023 30.8 7.9 71 119-193 11-86 (202)
365 cd04949 GT1_gtfA_like This fam 42.0 2.4E+02 0.0051 30.5 11.3 56 145-208 290-345 (372)
366 PF04321 RmlD_sub_bind: RmlD s 41.9 46 0.001 35.7 5.6 55 88-144 1-63 (286)
367 cd03806 GT1_ALG11_like This fa 41.8 2.7E+02 0.0059 31.5 12.0 107 87-207 273-391 (419)
368 PRK09288 purT phosphoribosylgl 41.5 2.6E+02 0.0056 31.1 11.7 53 86-141 11-83 (395)
369 cd04951 GT1_WbdM_like This fam 41.4 2E+02 0.0043 30.4 10.3 105 87-207 219-325 (360)
370 PRK05752 uroporphyrinogen-III 41.4 4.4E+02 0.0096 27.6 14.1 110 86-205 129-250 (255)
371 PF00117 GATase: Glutamine ami 41.4 96 0.0021 30.8 7.5 86 91-185 1-91 (192)
372 PRK05286 dihydroorotate dehydr 41.3 1.9E+02 0.004 32.3 10.4 60 148-208 276-342 (344)
373 PLN02781 Probable caffeoyl-CoA 41.1 1E+02 0.0022 32.4 7.8 54 88-141 94-152 (234)
374 PRK03562 glutathione-regulated 41.0 1.6E+02 0.0035 35.5 10.5 94 86-189 422-516 (621)
375 PRK02649 ppnK inorganic polyph 40.8 1.8E+02 0.004 32.0 10.0 101 89-208 3-124 (305)
376 COG0036 Rpe Pentose-5-phosphat 40.7 2.2E+02 0.0048 30.1 10.0 96 90-189 89-195 (220)
377 cd08189 Fe-ADH5 Iron-containin 40.7 1.8E+02 0.004 32.5 10.3 63 88-154 27-102 (374)
378 cd00331 IGPS Indole-3-glycerol 40.6 2.6E+02 0.0057 28.6 10.7 57 146-205 59-117 (217)
379 cd01743 GATase1_Anthranilate_S 40.6 72 0.0016 31.8 6.4 76 90-170 1-79 (184)
380 PRK10547 chemotaxis protein Ch 40.6 37 0.0008 41.4 5.0 37 25-67 489-525 (670)
381 PRK13585 1-(5-phosphoribosyl)- 40.6 2.7E+02 0.0058 28.9 10.9 78 119-201 150-238 (241)
382 cd05844 GT1_like_7 Glycosyltra 40.5 4.2E+02 0.0092 28.2 12.8 107 87-207 219-335 (367)
383 PF04131 NanE: Putative N-acet 40.4 3.6E+02 0.0077 28.0 11.2 98 87-191 64-173 (192)
384 PF00563 EAL: EAL domain; Int 40.4 42 0.0009 33.8 4.8 82 101-186 138-226 (236)
385 cd08186 Fe-ADH8 Iron-containin 40.3 1.5E+02 0.0032 33.4 9.5 63 88-154 27-103 (383)
386 PRK09590 celB cellobiose phosp 40.1 1.9E+02 0.0042 26.8 8.6 95 89-204 3-102 (104)
387 PF00448 SRP54: SRP54-type pro 40.0 81 0.0018 32.2 6.8 118 87-207 29-165 (196)
388 PRK06015 keto-hydroxyglutarate 40.0 3.6E+02 0.0079 28.0 11.5 45 92-138 10-58 (201)
389 TIGR01823 PabB-fungal aminodeo 39.9 90 0.0019 38.6 8.2 81 86-170 4-94 (742)
390 PRK01372 ddl D-alanine--D-alan 39.9 58 0.0012 34.9 6.0 40 99-140 24-63 (304)
391 cd06326 PBP1_STKc_like Type I 39.8 3E+02 0.0064 29.3 11.5 83 87-174 136-229 (336)
392 PF01564 Spermine_synth: Sperm 39.8 80 0.0017 33.5 6.9 67 88-156 101-179 (246)
393 PRK13125 trpA tryptophan synth 39.8 2.5E+02 0.0053 29.6 10.6 68 134-204 31-124 (244)
394 cd03785 GT1_MurG MurG is an N- 39.8 4.1E+02 0.0089 28.4 12.6 54 148-207 263-323 (350)
395 cd05013 SIS_RpiR RpiR-like pro 39.7 2.7E+02 0.0058 25.3 9.7 83 89-176 15-101 (139)
396 COG0352 ThiE Thiamine monophos 39.5 2.9E+02 0.0064 28.9 10.8 66 116-188 110-183 (211)
397 cd06359 PBP1_Nba_like Type I p 39.4 3.5E+02 0.0076 29.0 12.0 78 89-169 136-221 (333)
398 PRK11036 putative S-adenosyl-L 39.3 2.5E+02 0.0054 29.4 10.5 66 87-155 66-136 (255)
399 PRK04296 thymidine kinase; Pro 39.3 43 0.00093 33.8 4.6 102 86-205 29-136 (190)
400 PRK09522 bifunctional glutamin 39.0 46 0.00099 39.5 5.4 76 88-170 2-85 (531)
401 PF03932 CutC: CutC family; I 39.0 85 0.0018 32.6 6.7 98 87-188 88-196 (201)
402 PRK15490 Vi polysaccharide bio 38.8 4.4E+02 0.0095 31.8 13.2 102 87-202 429-532 (578)
403 PLN02935 Bifunctional NADH kin 38.8 3.7E+02 0.008 31.9 12.4 103 87-208 194-318 (508)
404 TIGR01133 murG undecaprenyldip 38.7 3.7E+02 0.008 28.7 12.0 55 148-207 261-320 (348)
405 PRK07239 bifunctional uroporph 38.6 3.6E+02 0.0078 30.1 12.3 117 85-210 140-280 (381)
406 TIGR01305 GMP_reduct_1 guanosi 38.6 4E+02 0.0086 30.1 12.1 102 87-191 121-241 (343)
407 PRK13609 diacylglycerol glucos 38.5 3.8E+02 0.0082 29.4 12.3 53 147-207 283-337 (380)
408 COG3290 CitA Signal transducti 38.4 45 0.00097 39.4 5.1 59 2-67 468-533 (537)
409 PRK04128 1-(5-phosphoribosyl)- 38.3 2.5E+02 0.0055 29.4 10.3 68 118-191 30-102 (228)
410 PLN02589 caffeoyl-CoA O-methyl 38.0 1.1E+02 0.0024 32.6 7.7 54 88-141 105-164 (247)
411 TIGR01163 rpe ribulose-phospha 38.0 2.8E+02 0.0061 27.8 10.3 65 135-202 29-97 (210)
412 CHL00200 trpA tryptophan synth 37.8 1.4E+02 0.003 32.3 8.3 57 146-205 78-140 (263)
413 PRK04885 ppnK inorganic polyph 37.8 1.8E+02 0.0039 31.4 9.3 76 100-208 17-93 (265)
414 PRK00994 F420-dependent methyl 37.6 2.9E+02 0.0062 29.8 10.2 78 109-191 29-116 (277)
415 COG1419 FlhF Flagellar GTP-bin 37.6 2.3E+02 0.0051 32.6 10.4 107 85-193 231-348 (407)
416 COG0421 SpeE Spermidine syntha 37.5 1.1E+02 0.0025 33.2 7.8 67 87-156 100-178 (282)
417 cd06349 PBP1_ABC_ligand_bindin 37.5 3.3E+02 0.0072 29.2 11.4 83 91-178 140-232 (340)
418 PF00497 SBP_bac_3: Bacterial 37.4 1.1E+02 0.0023 29.9 7.1 54 84-141 107-160 (225)
419 cd06389 PBP1_iGluR_AMPA_GluR2 37.4 2.3E+02 0.0049 31.6 10.3 82 89-173 120-215 (370)
420 cd06355 PBP1_FmdD_like Peripla 37.4 3E+02 0.0066 29.9 11.2 77 88-167 134-222 (348)
421 PRK04539 ppnK inorganic polyph 37.3 3E+02 0.0064 30.3 11.0 101 89-208 7-124 (296)
422 PF09456 RcsC: RcsC Alpha-Beta 37.3 1E+02 0.0022 28.2 6.1 89 90-205 2-91 (92)
423 PRK08318 dihydropyrimidine deh 37.3 3.6E+02 0.0079 30.7 12.1 63 148-210 239-308 (420)
424 PRK00726 murG undecaprenyldiph 37.2 4.9E+02 0.011 28.2 12.8 54 148-207 263-323 (357)
425 cd03804 GT1_wbaZ_like This fam 37.1 2.3E+02 0.005 30.4 10.1 105 88-208 222-326 (351)
426 cd03799 GT1_amsK_like This is 37.1 3.3E+02 0.0072 28.6 11.2 107 87-207 210-326 (355)
427 cd08176 LPO Lactadehyde:propan 37.1 2.2E+02 0.0049 31.9 10.3 63 88-154 29-104 (377)
428 cd06332 PBP1_aromatic_compound 37.0 4.4E+02 0.0096 27.8 12.2 54 118-174 173-226 (333)
429 KOG1203 Predicted dehydrogenas 36.9 89 0.0019 35.9 7.0 71 85-157 77-149 (411)
430 PRK06843 inosine 5-monophospha 36.9 1E+02 0.0022 35.4 7.5 55 132-189 164-220 (404)
431 PRK06769 hypothetical protein; 36.6 4.3E+02 0.0093 26.1 11.4 83 106-192 39-138 (173)
432 COG4378 Uncharacterized protei 36.5 36 0.00079 31.1 3.1 75 89-167 2-76 (103)
433 TIGR00078 nadC nicotinate-nucl 36.5 2.2E+02 0.0047 30.8 9.6 91 89-189 150-248 (265)
434 cd04727 pdxS PdxS is a subunit 36.4 1.1E+02 0.0023 33.5 7.2 61 146-209 181-248 (283)
435 PF06283 ThuA: Trehalose utili 36.4 72 0.0016 32.7 5.8 75 89-169 1-88 (217)
436 TIGR00642 mmCoA_mut_beta methy 36.3 2.3E+02 0.005 34.4 10.7 112 87-206 494-616 (619)
437 COG1411 Uncharacterized protei 36.3 1.3E+02 0.0028 31.5 7.4 71 117-191 136-210 (229)
438 PRK09835 sensor kinase CusS; P 36.2 45 0.00098 37.5 4.7 56 2-65 413-480 (482)
439 PRK15454 ethanol dehydrogenase 36.0 1.6E+02 0.0034 33.5 8.9 63 88-154 50-125 (395)
440 PRK13849 putative crown gall t 35.9 1.8E+02 0.004 30.4 8.8 65 85-154 28-103 (231)
441 PRK03612 spermidine synthase; 35.9 1.4E+02 0.0031 35.2 8.8 66 88-156 322-403 (521)
442 PRK02645 ppnK inorganic polyph 35.8 2.4E+02 0.0052 31.0 10.0 103 88-208 4-115 (305)
443 TIGR03499 FlhF flagellar biosy 35.8 95 0.0021 33.5 6.8 54 87-141 224-280 (282)
444 cd06533 Glyco_transf_WecG_TagA 35.7 1.1E+02 0.0025 30.4 6.9 78 86-170 45-132 (171)
445 PRK00025 lpxB lipid-A-disaccha 35.7 3.8E+02 0.0082 29.3 11.7 23 185-207 318-340 (380)
446 PRK09727 his operon leader pep 35.7 15 0.00032 25.1 0.4 6 606-611 6-11 (26)
447 PF03102 NeuB: NeuB family; I 35.7 1.5E+02 0.0031 31.7 8.0 102 98-207 56-168 (241)
448 cd06366 PBP1_GABAb_receptor Li 35.7 4.1E+02 0.0089 28.6 11.9 58 99-159 151-217 (350)
449 PRK13170 hisH imidazole glycer 35.7 94 0.002 31.7 6.4 44 88-139 1-44 (196)
450 cd02911 arch_FMN Archeal FMN-b 35.6 4.6E+02 0.01 27.6 11.8 89 94-190 123-219 (233)
451 PF01959 DHQS: 3-dehydroquinat 35.6 3.3E+02 0.0071 30.8 10.9 70 134-207 97-169 (354)
452 PF03808 Glyco_tran_WecB: Glyc 35.5 1.3E+02 0.0028 30.0 7.3 67 86-156 47-123 (172)
453 cd08178 AAD_C C-terminal alcoh 35.5 1.8E+02 0.004 32.9 9.4 63 88-154 22-97 (398)
454 cd04724 Tryptophan_synthase_al 35.5 2.4E+02 0.0052 29.8 9.6 97 90-192 108-216 (242)
455 cd06360 PBP1_alkylbenzenes_lik 35.4 5.7E+02 0.012 27.1 13.7 79 89-170 136-225 (336)
456 PF13941 MutL: MutL protein 35.3 7E+02 0.015 29.3 14.0 122 85-210 74-211 (457)
457 PRK14994 SAM-dependent 16S rib 35.3 1.7E+02 0.0037 32.0 8.7 114 85-206 35-160 (287)
458 TIGR01579 MiaB-like-C MiaB-lik 35.2 2.1E+02 0.0045 32.5 9.8 92 98-205 11-107 (414)
459 TIGR01302 IMP_dehydrog inosine 35.2 1.2E+02 0.0026 35.1 7.9 63 120-188 226-290 (450)
460 PRK09776 putative diguanylate 35.1 1.4E+02 0.0029 37.8 9.1 101 100-203 976-1088(1092)
461 PRK04128 1-(5-phosphoribosyl)- 35.1 1.4E+02 0.0029 31.4 7.7 73 111-190 136-210 (228)
462 cd03807 GT1_WbnK_like This fam 35.1 4.5E+02 0.0098 27.1 11.7 64 134-208 269-332 (365)
463 PRK03378 ppnK inorganic polyph 35.0 2.6E+02 0.0056 30.6 10.0 101 89-208 7-119 (292)
464 cd08551 Fe-ADH iron-containing 35.0 2.4E+02 0.0053 31.3 10.1 63 88-154 24-99 (370)
465 PF03328 HpcH_HpaI: HpcH/HpaI 34.9 3.1E+02 0.0067 28.2 10.2 86 117-205 7-106 (221)
466 COG0159 TrpA Tryptophan syntha 34.8 1.3E+02 0.0028 32.7 7.4 58 148-207 82-145 (265)
467 PRK10624 L-1,2-propanediol oxi 34.8 1.7E+02 0.0036 33.0 8.8 63 88-154 31-106 (382)
468 PF02572 CobA_CobO_BtuR: ATP:c 34.8 72 0.0016 32.3 5.3 46 132-180 95-146 (172)
469 cd08194 Fe-ADH6 Iron-containin 34.7 2.7E+02 0.0059 31.2 10.4 63 88-154 24-99 (375)
470 cd03812 GT1_CapH_like This fam 34.6 3.9E+02 0.0085 28.2 11.4 107 87-208 223-331 (358)
471 cd04736 MDH_FMN Mandelate dehy 34.6 3.1E+02 0.0067 31.1 10.7 88 100-193 225-321 (361)
472 cd06296 PBP1_CatR_like Ligand- 34.5 1.9E+02 0.0042 29.4 8.7 63 99-170 17-86 (270)
473 cd06348 PBP1_ABC_ligand_bindin 34.4 3.9E+02 0.0085 28.7 11.4 65 98-167 152-223 (344)
474 COG0552 FtsY Signal recognitio 34.4 2.8E+02 0.0061 31.2 10.1 68 85-155 165-247 (340)
475 PLN02476 O-methyltransferase 34.3 1.2E+02 0.0026 33.1 7.2 53 89-141 145-202 (278)
476 cd04731 HisF The cyclase subun 34.3 1.3E+02 0.0028 31.4 7.4 70 117-191 26-100 (243)
477 cd02940 DHPD_FMN Dihydropyrimi 34.1 2.5E+02 0.0053 30.6 9.7 41 148-189 239-279 (299)
478 PRK08811 uroporphyrinogen-III 34.0 4E+02 0.0086 28.6 11.2 109 84-201 15-131 (266)
479 KOG1185 Thiamine pyrophosphate 33.9 1.5E+02 0.0033 34.9 8.1 97 86-209 447-549 (571)
480 cd02810 DHOD_DHPD_FMN Dihydroo 33.8 2E+02 0.0042 30.8 8.8 40 148-188 230-269 (289)
481 PRK01362 putative translaldola 33.8 2.7E+02 0.006 29.1 9.6 94 97-192 85-185 (214)
482 cd03808 GT1_cap1E_like This fa 33.8 5.1E+02 0.011 26.5 11.8 64 134-207 264-328 (359)
483 TIGR01668 YqeG_hyp_ppase HAD s 33.6 1.9E+02 0.004 28.6 8.0 63 125-193 18-93 (170)
484 cd06279 PBP1_LacI_like_3 Ligan 33.6 1.7E+02 0.0036 30.5 8.2 64 99-170 22-87 (283)
485 cd06268 PBP1_ABC_transporter_L 33.5 5.2E+02 0.011 26.1 12.7 84 88-176 136-230 (298)
486 COG0167 PyrD Dihydroorotate de 33.5 1.5E+02 0.0032 32.9 7.9 63 148-211 228-297 (310)
487 cd06282 PBP1_GntR_like_2 Ligan 33.4 2.1E+02 0.0046 28.9 8.7 64 99-170 17-87 (266)
488 PRK05282 (alpha)-aspartyl dipe 33.3 2.1E+02 0.0045 30.4 8.7 64 86-156 30-99 (233)
489 PRK13141 hisH imidazole glycer 33.2 1.7E+02 0.0036 29.8 7.8 73 89-170 1-80 (205)
490 PRK08649 inosine 5-monophospha 33.2 5.3E+02 0.012 29.2 12.4 65 119-190 142-214 (368)
491 cd08182 HEPD Hydroxyethylphosp 33.1 2.2E+02 0.0049 31.7 9.5 64 88-155 24-97 (367)
492 cd04731 HisF The cyclase subun 33.0 4.4E+02 0.0096 27.4 11.2 64 122-190 153-222 (243)
493 cd01575 PBP1_GntR Ligand-bindi 33.0 2.2E+02 0.0049 28.8 8.8 61 100-169 18-85 (268)
494 cd03814 GT1_like_2 This family 32.9 4.8E+02 0.01 27.1 11.6 76 119-207 256-331 (364)
495 PRK13802 bifunctional indole-3 32.7 4E+02 0.0087 32.9 12.0 89 99-191 148-240 (695)
496 PRK10935 nitrate/nitrite senso 32.6 52 0.0011 38.1 4.5 36 26-67 526-561 (565)
497 PRK10551 phage resistance prot 32.5 1.7E+02 0.0036 34.6 8.6 98 103-203 402-511 (518)
498 PRK00654 glgA glycogen synthas 32.5 6.3E+02 0.014 28.9 13.2 109 87-208 311-428 (466)
499 PRK14967 putative methyltransf 32.5 5.6E+02 0.012 26.2 13.0 48 89-141 61-109 (223)
500 PRK08005 epimerase; Validated 32.4 1.6E+02 0.0034 30.8 7.5 86 101-190 96-190 (210)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=1.5e-21 Score=202.12 Aligned_cols=120 Identities=29% Similarity=0.470 Sum_probs=114.4
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..|..+|+..||+|..+.++++|++++.. . |||||+|+ ||+|||+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999987 6 99999999 9999999999999966 56789999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~ 211 (746)
|||+.++..+...++++||||||.|||.+.||.+.|+.++||...
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999999999999999999999999999999999998754
No 2
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.84 E-value=6e-20 Score=221.60 Aligned_cols=198 Identities=16% Similarity=0.236 Sum_probs=157.1
Q ss_pred CCCCchhhHHHHHHHHHhc--------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCCCc
Q 004541 2 NVDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~~~ 73 (746)
.|+|+|+. ...+.++|.. .+....++|+++++++|||. |.+.|.+|.|++|++.+|+....++..
T Consensus 550 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~g~GLGL~i~~~~~~~~gG~------i~i~s~~~~Gt~f~i~lp~~~~~~~~~ 622 (921)
T PRK15347 550 EDTGCGID-IQQQQQIFTPFYQADTHSQGTGLGLTIASSLAKMMGGE------LTLFSTPGVGSCFSLVLPLNEYAPPEP 622 (921)
T ss_pred EEcCCCCC-HHHHHHHhcCcccCCCCCCCCchHHHHHHHHHHHcCCE------EEEEecCCCceEEEEEEECCCCCCccc
Confidence 48999986 3456666632 12234489999999999876 455788899999999999754221110
Q ss_pred cc----------------------c--------------------------------chhhhccCCCccEEEEEecChhH
Q 004541 74 GA----------------------M--------------------------------VCWERFLHLRSLKVLLVENDDST 99 (746)
Q Consensus 74 ~~----------------------~--------------------------------~~~~~~~~~~~lrVLVVDDd~~~ 99 (746)
.. . ...........++||||||++.+
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~ 702 (921)
T PRK15347 623 LKGELSAPLALHRQLSAWGITCQPGHQNPALLDPELAYLPGRLYDLLQQIIQGAPNEPVINLPLQPWQLQILLVDDVETN 702 (921)
T ss_pred ccccccchHHHHHHHHHcCCcccccccchhhcchhhhhcchHHHHHHHHHhhcCCCcccccCCCCcccCCEEEEeCCHHH
Confidence 00 0 00000011234689999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhcc--CCCCccEEEEecCCCHHH
Q 004541 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGL 176 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~--~~~~iPVI~LTa~~~~~~ 176 (746)
+..+..+|+.+||+|..+.++.+|++.+.. ..|||||+|+ ||+|+|++++++||+.. ..+.+|||++|+....+.
T Consensus 703 ~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~ 780 (921)
T PRK15347 703 RDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEE 780 (921)
T ss_pred HHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHH
Confidence 999999999999999999999999999987 7899999999 99999999999998643 236799999999999999
Q ss_pred HHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 177 VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 177 ~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
..+++.+|+++||.||++..+|..+|.++++.
T Consensus 781 ~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 781 IHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999887653
No 3
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.84 E-value=6.7e-20 Score=218.60 Aligned_cols=195 Identities=21% Similarity=0.290 Sum_probs=153.9
Q ss_pred CCCCchhhHHHHHHHHHh---c----------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADKRLQELNHCLQ---A----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~---~----------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
.|+|+|.. ...+.++|. . .+....++||+++++.|||.+.+ .|.+|.|++|++.+|++..
T Consensus 436 ~D~G~Gi~-~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v------~s~~g~Gt~f~i~lP~~~~ 508 (779)
T PRK11091 436 EDSGIGIP-EDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITV------TSEEGKGSCFTLTIHAPAV 508 (779)
T ss_pred EecCCCCC-HHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE------EecCCCeEEEEEEEecccc
Confidence 47899876 334444442 1 12233489999999998776654 6778889999999988654
Q ss_pred CCCCccccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH
Q 004541 69 QEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147 (746)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG 147 (746)
........ .....+...++||||||++.++..+..+|+.+||.|..+.++.+|++.+.. ..|||||+|+ ||+|+|
T Consensus 509 ~~~~~~~~--~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G 584 (779)
T PRK11091 509 AEEVEDAF--DEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTG 584 (779)
T ss_pred cccccccc--ccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCH
Confidence 33211111 112234567899999999999999999999999999999999999999986 7899999999 999999
Q ss_pred HHHHHHHHhccCCCC-ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKN-LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 148 lellr~IR~~~~~~~-iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+++++.||+...... +|||++|++... ...+++.+|+++||.||++..+|..+|.+++..
T Consensus 585 ~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 585 LDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 999999987654355 499999998764 467899999999999999999999999988754
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.84 E-value=7.3e-20 Score=222.25 Aligned_cols=195 Identities=22% Similarity=0.239 Sum_probs=157.9
Q ss_pred CCCCchhhHHHHHHHHHhc----------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCC
Q 004541 2 NVDGKADKRLQELNHCLQA----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQ 71 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~----------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~ 71 (746)
.|+|+|+. ...+.++|.. .+....++|++++++.|||.+. +.|.+|.|++|++.+|+......
T Consensus 617 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~------~~s~~~~Gt~f~~~lp~~~~~~~ 689 (968)
T TIGR02956 617 EDTGCGIA-EEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELG------VESELGVGSCFWFTLPLTRGKPA 689 (968)
T ss_pred EeCCCCCC-HHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEE------EEecCCCcEEEEEEEEcCCCCcc
Confidence 47899876 3345555521 1223348999999999988754 46778889999999987653322
Q ss_pred CccccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHH
Q 004541 72 PQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVAL 150 (746)
Q Consensus 72 ~~~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlel 150 (746)
..... .........+||||||++.++..+..+|+.+||+|..+.++.+|++.+.. ..|||||+|+ ||+|+|+++
T Consensus 690 ~~~~~---~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~ 764 (968)
T TIGR02956 690 EDSAT---LTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTL 764 (968)
T ss_pred ccccc---cccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHH
Confidence 11111 01233456799999999999999999999999999999999999999987 7899999999 999999999
Q ss_pred HHHHHhccCCCC-ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 151 LSKIMSHKTRKN-LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 151 lr~IR~~~~~~~-iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
++.||+...... +|||++|++...+...+++..|+++||.||++..+|...|.+++..
T Consensus 765 ~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 765 LQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred HHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 999987654333 9999999999999999999999999999999999999999998753
No 5
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.84 E-value=9.6e-20 Score=220.28 Aligned_cols=194 Identities=17% Similarity=0.228 Sum_probs=157.4
Q ss_pred CCCCchhhHHHHHHHHHhc--------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCCCc
Q 004541 2 NVDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~~~ 73 (746)
.|+|+|+. ...+.++|.. .+....++|++++++.|||.+ .+.|.+|.|++|++.+|+....+.++
T Consensus 598 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~g~GLGL~i~~~l~~~~gG~i------~v~s~~~~Gt~f~i~lP~~~~~~~~~ 670 (914)
T PRK11466 598 EDSGCGID-PAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGEL------SATSTPEVGSCFCLRLPLRVATAPVP 670 (914)
T ss_pred EECCCCCC-HHHHHHHhchhhcCCCCCCCCcccHHHHHHHHHHcCCEE------EEEecCCCCeEEEEEEEccccccccc
Confidence 47899876 3455555522 123345899999999998765 44677788999999998765432222
Q ss_pred cccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHH
Q 004541 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (746)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr 152 (746)
.. ........+++||||||++.++..+..+|+.+||+|..+.++.+|++.+.. ...|||||+|+ ||+|+|+++++
T Consensus 671 ~~---~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~~~~~ 746 (914)
T PRK11466 671 KT---VNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGITLAR 746 (914)
T ss_pred cc---cccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHHHHHH
Confidence 11 111223456799999999999999999999999999999999999998864 25689999999 99999999999
Q ss_pred HHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 153 ~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.||+. .+.+|||++|++.......+++..|+++||.||++.++|..+|.++++.
T Consensus 747 ~lr~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 747 QLAQQ--YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred HHHhh--CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 99864 4789999999999999999999999999999999999999999998864
No 6
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.82 E-value=4.1e-19 Score=216.20 Aligned_cols=121 Identities=30% Similarity=0.480 Sum_probs=113.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
..++||||||++.++..+..+|+..||+|..+.++.+|++++.. ..|||||+|+ ||+|+|+++++.||+.. +.+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 45799999999999999999999999999999999999999987 7899999999 99999999999998753 6799
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
||++|+....+...+++++|+++||.||++..+|..+|.+++++.+
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r 921 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 921 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999877654
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.81 E-value=7.4e-19 Score=218.64 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=156.9
Q ss_pred CCCCchhhHHHHHHHHHhcC----------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCC
Q 004541 2 NVDGKADKRLQELNHCLQAG----------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQ 71 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~----------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~ 71 (746)
.|+|+|.. ...+.++|... +....++||+++++.|||.+.+ .|.+|.|++|++.+|+......
T Consensus 870 ~D~G~Gi~-~~~~~~iF~~f~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v------~s~~~~Gt~f~i~lP~~~~~~~ 942 (1197)
T PRK09959 870 MDSGSGLS-QEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL------ESHPGIGTTFTITIPVEISQQV 942 (1197)
T ss_pred EEcCCCCC-HHHHHHhhccccccccCCCCCCcCchHHHHHHHHHHcCCEEEE------EeCCCCcEEEEEEEEccccchh
Confidence 47899875 34566666321 2334589999999988876544 6677889999999987643322
Q ss_pred CccccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHH
Q 004541 72 PQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVAL 150 (746)
Q Consensus 72 ~~~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlel 150 (746)
................++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++
T Consensus 943 ~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~ 1020 (1197)
T PRK09959 943 ATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFEL 1020 (1197)
T ss_pred cccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHH
Confidence 1111111111122345799999999999999999999999999999999999999986 7899999999 999999999
Q ss_pred HHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 151 LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 151 lr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
++.||.. .+.+|||++|+........+++..|+++||.||++.++|..+|+++++.
T Consensus 1021 ~~~i~~~--~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1021 TRKLREQ--NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred HHHHHhc--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999864 4679999999999999999999999999999999999999999887653
No 8
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.81 E-value=1e-18 Score=210.79 Aligned_cols=120 Identities=26% Similarity=0.366 Sum_probs=113.1
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
.++||||||++.++..+..+|+.+|+.|..+.++.+|++.+.. ..||+||+|+ ||+|+|+++++.||+....+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 5789999999999999999999999999999999999999987 7899999999 999999999999998666678999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|++|++...+...+++.+|+++||.||++..+|...|.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999987654
No 9
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.79 E-value=7.2e-19 Score=196.47 Aligned_cols=120 Identities=28% Similarity=0.513 Sum_probs=112.3
Q ss_pred ccEEEEEecChhHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRN--CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~--~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~ 162 (746)
+++||||||.+.+|+.|+.++.. +|++|+ +|.||.+||+++++ ..|||||+|+ ||+|||+++++.|++. .++
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLdLI~~ike~--~p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLDLIKAIKEQ--SPD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHh--CCC
Confidence 36899999999999999999964 589888 89999999999998 8999999999 9999999999999764 588
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
+.+|+||++.+-+.+.+|+..|+.|||.||++..+|..+|.++..+..
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988754
No 10
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=2e-18 Score=193.20 Aligned_cols=121 Identities=31% Similarity=0.514 Sum_probs=114.1
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++.+|..+..+|+..||.|.++.++.+|++++.. ..|||||+|+ ||+|||+++++.|++.. +++||
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~pV 79 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPV 79 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhC--CCCCE
Confidence 3479999999999999999999999999999999999999997 4799999999 99999999999997664 89999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~ 211 (746)
|+||++.+.+...+|++.||.|||.|||+++.|...|.+++...+.
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999987543
No 11
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.77 E-value=1e-17 Score=150.43 Aligned_cols=110 Identities=32% Similarity=0.573 Sum_probs=105.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~-~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
||||||++..+..+..+|+..|| .|..+.++.+|++.++. ..||+||+|+ ||+++|+++++.||... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 99999999999999988 7899999999 99999999999998765 8899999
Q ss_pred EecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~ 203 (746)
+|...+.....+++++|+++||.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999999875
No 12
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=7.3e-18 Score=169.79 Aligned_cols=122 Identities=25% Similarity=0.437 Sum_probs=112.8
Q ss_pred cEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++|||||||+.+.++-+.+++.. ||.++ +|.++++|..++.. ..|||||+|+ ||+.+|++|+..||+.. ..+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 58999999999999999999987 89887 89999999999997 7789999999 99999999999998654 6678
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~~~ 213 (746)
||++|+..+.+.+.+++..|+.|||.|||..+.|.++|.++.++.+...
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988876544
No 13
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.76 E-value=4e-17 Score=196.81 Aligned_cols=197 Identities=19% Similarity=0.116 Sum_probs=157.8
Q ss_pred CCCCchhhHHHHHHHHHhc------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCCCccc
Q 004541 2 NVDGKADKRLQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGA 75 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~~~~~ 75 (746)
.|+|+|+. ...+.++|.. .+....++|++++++.+||.+ .+.|.+|.|++|++.+|.....+..+..
T Consensus 613 ~D~G~GI~-~e~~~~iFe~F~~~~~~G~GLGL~i~~~iv~~~gG~i------~v~s~~g~Gt~f~i~LP~~~~~~~~~~~ 685 (828)
T PRK13837 613 SDTGAGID-EAVLPHIFEPFFTTRAGGTGLGLATVHGIVSAHAGYI------DVQSTVGRGTRFDVYLPPSSKVPVAPQA 685 (828)
T ss_pred EECCCCCC-HHHHHHhhCCcccCCCCCCcchHHHHHHHHHHCCCEE------EEEecCCCeEEEEEEEeCCCCCCCCccc
Confidence 47899986 4466677633 233345899999999887765 4567788999999999976543322221
Q ss_pred cchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHH
Q 004541 76 MVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (746)
Q Consensus 76 ~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR 155 (746)
...+.......+.+||||||++..+..+..+|..+||+|+.+.++.+|++.+......||+||+ .||+++|+++++.|+
T Consensus 686 ~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~ 764 (828)
T PRK13837 686 FFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALH 764 (828)
T ss_pred cCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHH
Confidence 1122222334567899999999999999999999999999999999999999763345899999 689999999999997
Q ss_pred hccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
.. .+.+|||++|+........+++..| ++||.||++..+|..+|.+++++.
T Consensus 765 ~~--~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 765 AA--APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred hh--CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 54 4789999999999989999999999 999999999999999999998764
No 14
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-17 Score=164.42 Aligned_cols=121 Identities=26% Similarity=0.424 Sum_probs=112.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.-|.|||||..+|+.+..+|+..||.|.++.++++.|..... ..+-+||+|+ ||+|+|+++.++|.+. ...+|||
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~--~~~~PVI 80 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAER--GIRLPVI 80 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhc--CCCCCEE
Confidence 469999999999999999999999999999999999998644 7889999999 9999999999999765 4789999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~~ 212 (746)
+||++.+..+..+++++||.|||.|||+.+.|+.+|++.+++....
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~ 126 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR 126 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886543
No 15
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-17 Score=178.57 Aligned_cols=123 Identities=33% Similarity=0.501 Sum_probs=114.9
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHh-ccCCCC
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS-HKTRKN 162 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~-~~~~~~ 162 (746)
...++||+|||.+.++..+..+|+..||+|..|.+|++|++++.. ..+|+||+|+ ||+|+|++++.+|+. .+.+..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 456799999999999999999999999999999999999999987 5699999999 999999999999998 777889
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||||++|++.+.+...+++.+|+++||.||+++.+|...+...++.+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997665443
No 16
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-16 Score=146.88 Aligned_cols=120 Identities=33% Similarity=0.583 Sum_probs=107.2
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCC-CccEEEEcc-CCCCCHHHHHHHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGL-QAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~-EALe~L~~~~~-~~DLVLlDi-MP~mdGlellr~IR~~~~~~~ 162 (746)
...+||||||++..+..+..+|..+|+.|..+.++. +|+++++. . .||+||+|+ ||+|+|++++++||+. .+.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~ 79 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPGMDGIELLRRLRAR--GPN 79 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCC
Confidence 457999999999999999999999999999999995 99999987 5 599999999 9999999999999875 467
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHH-HHHHHHHHHHHh
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRRC 209 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~e-L~~~L~~vlrr~ 209 (746)
+|||++|++.......+++..|+++||.||+...+ |..++.+++...
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 127 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLARA 127 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHhh
Confidence 88999999998887778899999999999987777 788888766543
No 17
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.72 E-value=3.2e-17 Score=196.15 Aligned_cols=123 Identities=24% Similarity=0.424 Sum_probs=114.7
Q ss_pred cCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCC
Q 004541 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 83 ~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~ 161 (746)
...++.+||||||+..++.+.+.+|+++|.+|+++.+|.||++.+.. ...||+||||+ ||.|||+|++++||+... .
T Consensus 662 ~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~ 739 (786)
T KOG0519|consen 662 KLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-W 739 (786)
T ss_pred ccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-C
Confidence 34568899999999999999999999999999999999999999983 57899999999 999999999999997765 7
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
++|||+|||+...+..++|++.|+|+||.|||+.+.|...|++++.
T Consensus 740 ~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 740 HLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred CCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999988763
No 18
>PLN03029 type-a response regulator protein; Provisional
Probab=99.70 E-value=3.6e-16 Score=160.83 Aligned_cols=124 Identities=31% Similarity=0.558 Sum_probs=111.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCccEEEEcc-CCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLT------------------NHIDLVLTEV-MPCLS 146 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~------------------~~~DLVLlDi-MP~md 146 (746)
..++||||||++..+..+..+|+.+||+|.++.++.+|++.+.... ..|||||+|+ ||+|+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4579999999999999999999999999999999999999986421 1478999999 99999
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|+++++.|++......+|||+||+........+++.+|+++||.||++..+|..++.++++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 999999998765557899999999999999999999999999999999999988888877654
No 19
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.69 E-value=3.9e-16 Score=159.79 Aligned_cols=118 Identities=27% Similarity=0.412 Sum_probs=109.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++.+|..|..+|...+ ++|+ .+.++.++++.+.. ..||+||+|+ ||+++|++++++|++. .++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~--~p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRAR--GPDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHH--CCCCc
Confidence 479999999999999999998875 8877 78889999999876 8899999999 9999999999999843 58899
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|.+.+..++.+++++||++||.|...+++|..+|+.++...
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999998765
No 20
>PRK13557 histidine kinase; Provisional
Probab=99.68 E-value=1.7e-15 Score=170.69 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=153.9
Q ss_pred CCCCchhhHHHHHHHHHhc--------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCCCCc
Q 004541 2 NVDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~~~~ 73 (746)
.|+|+|+. ...+.++|.. .+....++|++.+++.+||.+ .+.+.+|.|++|++.+|........+
T Consensus 330 ~D~G~Gi~-~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~v~~~gG~i------~~~s~~~~G~~f~i~lP~~~~~~~~~ 402 (540)
T PRK13557 330 TDTGSGMP-PEILARVMDPFFTTKEEGKGTGLGLSMVYGFAKQSGGAV------RIYSEVGEGTTVRLYFPASDQAENPE 402 (540)
T ss_pred EcCCCCCC-HHHHHhccCCCcccCCCCCCCCccHHHHHHHHHHCCCEE------EEEecCCCceEEEEEeeCCCCccCCC
Confidence 47899876 3455666632 133445899999999887654 44677889999999998754332211
Q ss_pred cccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHH
Q 004541 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALL 151 (746)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-mdGlell 151 (746)
.. ............+||||||++..+..+..+|+..||.+..+.++.+|++.+.. ...||+||+|. ||+ ++|++++
T Consensus 403 ~~-~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~~ 480 (540)
T PRK13557 403 QE-PKARAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMNGVMLA 480 (540)
T ss_pred CC-CCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCCHHHHH
Confidence 11 11111223446799999999999999999999999999999999999999864 23699999999 997 9999999
Q ss_pred HHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 152 r~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+.|++. .+.+|||+++..........++..|+.+||.||+..++|...|..++..
T Consensus 481 ~~l~~~--~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 481 REARRR--QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred HHHHHh--CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999865 3678999999998888888899999999999999999999999887653
No 21
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.67 E-value=5.3e-16 Score=172.68 Aligned_cols=124 Identities=31% Similarity=0.522 Sum_probs=118.4
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
...+||||||+...+..+..+|...||+|..+.++.+|+..+.+ ..||+||+|+ ||++||+++++++|+......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 45799999999999999999999999999999999999999987 6999999999 99999999999999998889999
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~ 211 (746)
||++++..+.....++++.|++|||.|||.+.+|...+.+.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999988653
No 22
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.66 E-value=2.7e-15 Score=153.46 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=109.4
Q ss_pred ccEEEEEecChhHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNC-GYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~-G~~-V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
.++||||||++.++..+..+|+.. ++. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. ...+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~--~~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQA--HYPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCC
Confidence 479999999999999999999874 785 5689999999999987 7899999999 9999999999999864 3557
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~ 211 (746)
|||++|+........+++.+||++||.||++.++|..+|++++.....
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776543
No 23
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.65 E-value=3.4e-15 Score=149.70 Aligned_cols=118 Identities=26% Similarity=0.441 Sum_probs=110.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+...|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|++. .+.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~--~~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999999986 7899999999 9999999999999764 3679999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+..+......++..|+++||.||++..+|...+..++++.
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988763
No 24
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=4.3e-15 Score=151.07 Aligned_cols=118 Identities=27% Similarity=0.475 Sum_probs=110.2
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. ..+||
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pi 77 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCE
Confidence 3589999999999999999999999999999999999999986 6899999999 9999999999999853 46899
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++|+.........++..|+++||.||++..+|...|..++++.
T Consensus 78 i~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999988999999999999999999999999999998874
No 25
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.64 E-value=4.8e-15 Score=149.28 Aligned_cols=119 Identities=26% Similarity=0.436 Sum_probs=111.1
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|+..||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 589999999999999999999999999999999999999876 7799999999 9999999999999875445689999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
++|+..+.....+++.+|+++||.||++..+|...|..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998876
No 26
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.64 E-value=4.8e-15 Score=148.60 Aligned_cols=117 Identities=25% Similarity=0.376 Sum_probs=109.0
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.||+. ..+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 489999999999999999999999999999999999998876 6799999999 9999999999999853 478999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+........+++.+|+++||.||+...+|...|+.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988764
No 27
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.64 E-value=5.2e-15 Score=148.80 Aligned_cols=117 Identities=28% Similarity=0.513 Sum_probs=109.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. .+.+|||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~--~~~~pii 76 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSA--NKGMPIL 76 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 379999999999999999999999999999999999998876 6799999999 9999999999999864 3679999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
++|+....+...+++.+|+++||.||++..+|...+..++++
T Consensus 77 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 77 LLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998875
No 28
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.63 E-value=6.5e-15 Score=146.37 Aligned_cols=120 Identities=28% Similarity=0.499 Sum_probs=111.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|+..|+++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 589999999999999999999999999999999999999986 6799999999 9999999999999865445679999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+........+++.+|+++||.||++..+|..+|..++++.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999988764
No 29
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.63 E-value=8.1e-15 Score=145.55 Aligned_cols=119 Identities=29% Similarity=0.453 Sum_probs=110.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+..+|+..|+.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~--~~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQK--KYTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEE
Confidence 479999999999999999999999999999999999999976 6799999999 9999999999999754 3678999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
++|+..+......++.+|+++||.||++.++|...++.++++..
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999887653
No 30
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=8.9e-15 Score=146.27 Aligned_cols=118 Identities=25% Similarity=0.434 Sum_probs=110.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||.. ..+|||
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ii 77 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVGII 77 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCEE
Confidence 589999999999999999999999999999999999999876 6799999999 9999999999999864 478999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
++++..+.....+++.+|+++||.||++..+|...|..++++..
T Consensus 78 ~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 78 LVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988753
No 31
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.61 E-value=1.3e-14 Score=143.97 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=109.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+..+|+..||++..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~--~~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREK--GQREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEE
Confidence 479999999999999999999999999999999999998876 6799999999 9999999999999764 4679999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+.........++.+|+++||.||++..+|..+|..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 32
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.61 E-value=1.3e-14 Score=147.24 Aligned_cols=119 Identities=26% Similarity=0.409 Sum_probs=110.9
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++..+..+..+|+..||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.||.. .+.+||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~--~~~~pi 80 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQ--NNPTPI 80 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 3589999999999999999999999999999999999999876 7899999999 9999999999999864 367999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++++.........++.+|+++||.||++..+|...|..++++.
T Consensus 81 i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 81 IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999988764
No 33
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=1.8e-14 Score=146.53 Aligned_cols=117 Identities=25% Similarity=0.340 Sum_probs=108.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 489999999999999999999999999999999999999986 7899999999 9999999999999863 357999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++++........+++.+|+++||.||+...+|...+..++++.
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999988888889999999999999999999999999988874
No 34
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.60 E-value=1.9e-14 Score=148.35 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=106.8
Q ss_pred cEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++.++..+..+|... ++.++ .+.++.++++.+......|||||+|+ ||+++|+++++.|++. .+.+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~--~~~~~ 79 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA--GCKSD 79 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--CCCCC
Confidence 68999999999999999999864 78755 78999999998863235699999999 9999999999999764 46899
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|+........+++..|+++||.||++.++|..+|.+++.+.
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877654
No 35
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.60 E-value=2.1e-14 Score=143.15 Aligned_cols=119 Identities=27% Similarity=0.421 Sum_probs=109.8
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
.++||||||++..+..+...|...||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~i 78 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAF--HPALPV 78 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCE
Confidence 3589999999999999999999999999999999999998876 6799999999 9999999999999864 367999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++|+.........++..|+++||.||++..+|..+|..++++.
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999998888899999999999999999999999999888764
No 36
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.60 E-value=2.7e-14 Score=143.34 Aligned_cols=117 Identities=26% Similarity=0.352 Sum_probs=108.7
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCC--CCHHHHHHHHHhccCCCCccE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~--mdGlellr~IR~~~~~~~iPV 165 (746)
+||||||++..+..+..+|+..||.+..+.++.++++.+.. ..||+||+|+ ||+ .+|+++++.|+.. .+.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~--~~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSL--SATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 69999999999999999999999999999999999999876 7799999999 998 5899999999764 367899
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++|+.........++.+|+++||.||+...+|..+|+.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998875
No 37
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.59 E-value=2.4e-14 Score=143.65 Aligned_cols=116 Identities=34% Similarity=0.487 Sum_probs=107.0
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|+..||.+..+.++.++++.+. ..||+||+|+ ||+++|+++++.|+... . +|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---~~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---cCCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEE
Confidence 48999999999999999999999999999999999999885 3699999999 99999999999998643 3 8999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+.........+++.|+++||.||++..+|...|..++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999888899999999999999999999999999988764
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.59 E-value=2.9e-14 Score=145.81 Aligned_cols=116 Identities=22% Similarity=0.404 Sum_probs=106.3
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii~ 77 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIII 77 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEE
Confidence 79999999999999999999999999999999999999976 7899999999 9999999999999753 4689999
Q ss_pred EecCC-CHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 168 MSSLD-SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 168 LTa~~-~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
+|+.. ......+++.+|+++||.||++..+|...|+.++++.
T Consensus 78 lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99854 5566779999999999999999999999999988764
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.59 E-value=4.8e-15 Score=154.97 Aligned_cols=116 Identities=21% Similarity=0.436 Sum_probs=106.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++|+|||||......|..+|.+.|..+..+....+||++|.. ..|||||+|+ ||+|+|+++++++|... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 479999999999999999999999888899999999999998 8999999999 99999999999998765 889999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+++ +.....+..-++|||.|||+++.|..+|.++.++.
T Consensus 77 fIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 77 FISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 999988 55567777778999999999999999999988654
No 40
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.58 E-value=3.8e-14 Score=141.36 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=108.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 479999999999999999999999999999999999999876 7899999999 9999999999999853 468999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++++..+.....+++.+|+++||.||+...+|...|+.++++.
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999888653
No 41
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.58 E-value=3.4e-14 Score=147.88 Aligned_cols=120 Identities=20% Similarity=0.384 Sum_probs=107.9
Q ss_pred ccEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
.++||||||++..+..+..+|... ++.++ .+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 468999999999999999999864 56665 79999999999987 7899999999 9999999999999876544458
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|||++|+........+++..|+++||.||++..+|...|.+++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987754
No 42
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.58 E-value=6.3e-14 Score=141.35 Aligned_cols=119 Identities=32% Similarity=0.541 Sum_probs=109.9
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
..++||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~ 79 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVP 79 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCc
Confidence 34689999999999999999999999999999999999998876 6799999999 9999999999999863 4799
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|+.........++.+|+++||.||++..+|...|..++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999988899999999999999999999999999988764
No 43
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.57 E-value=5.5e-14 Score=142.24 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=106.7
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCccEEEEcc-CCC---CCHHHHHHHHHhccCC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY-E-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPC---LSGVALLSKIMSHKTR 160 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~-~-V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~---mdGlellr~IR~~~~~ 160 (746)
.++||||||++..+..+..+|+..++ . +..+.++.++++.+.. ..|||||+|+ ||+ ++|++++++|+.. .
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~--~ 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRH--F 78 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHH--C
Confidence 47999999999999999999988765 4 5579999999999986 6799999999 999 5999999999754 4
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+.+|||++|.+........+++.|+++||.||+.+.+|..+|+.++..
T Consensus 79 ~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 779999999999999999999999999999999999999999988764
No 44
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.56 E-value=1.8e-14 Score=159.11 Aligned_cols=120 Identities=25% Similarity=0.383 Sum_probs=110.1
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
...+||||||++..+..+..+|. +.+.+..+.++.+|++.+.+ ..|||||+|+ ||+++|+++++.||+....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~-~~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILK-EEFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHh-hcceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 46789999999999999999995 45788889999999999876 7899999999 99999999999999766668999
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
||++|++.+.+...+++..|++|||.||+++++|...|...+++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876654
No 45
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.56 E-value=8.6e-14 Score=137.82 Aligned_cols=116 Identities=30% Similarity=0.489 Sum_probs=108.1
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRS--GKQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcc--CCCCcEEEE
Confidence 6899999999999999999999999999999999999976 7799999999 9999999999999754 467999999
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
+..........++.+|+++||.||+...+|...+..++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999988764
No 46
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.55 E-value=8.6e-14 Score=137.18 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=108.0
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
++||||||++..+..+...|+..||.+. .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeE
Confidence 4799999999999999999999999987 79999999999986 6899999999 9999999999999764 356899
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|++++.........++..|+++||.||++.++|..+|+.+++.
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999989999999999999999999999999999998764
No 47
>PRK09483 response regulator; Provisional
Probab=99.54 E-value=1.4e-13 Score=136.94 Aligned_cols=118 Identities=27% Similarity=0.400 Sum_probs=108.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++..+..+..+|+.. ++.++ .+.++.++++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ 77 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRY--TPDVK 77 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCCCe
Confidence 68999999999999999999975 88886 78999999999987 7899999999 9999999999999754 47899
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|..........++..|+++||.||+..++|..+|..+++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999987653
No 48
>PRK14084 two-component response regulator; Provisional
Probab=99.53 E-value=2.2e-13 Score=140.02 Aligned_cols=116 Identities=23% Similarity=0.418 Sum_probs=102.1
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-~-~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++..+..+..+|+..+ + .+..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|++. ...++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~--~~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKM--KEPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCE
Confidence 479999999999999999999875 4 46689999999999986 6799999999 9999999999999864 35678
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|++. ....++++.|+.+||.||+..++|..+|.++++..
T Consensus 77 iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999875 45678999999999999999999999999987654
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.52 E-value=1.5e-13 Score=154.27 Aligned_cols=120 Identities=24% Similarity=0.489 Sum_probs=111.4
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~--~~~~p 79 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKV--QPGMP 79 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCCCc
Confidence 34689999999999999999999999999999999999999986 7799999999 9999999999999754 57899
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|+........+++.+|+++||.||+...+|...|..+++..
T Consensus 80 vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 80 VIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988753
No 50
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.52 E-value=2e-13 Score=154.44 Aligned_cols=119 Identities=29% Similarity=0.459 Sum_probs=110.9
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~--~~~~pv 78 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPV 78 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhh--CCCCeE
Confidence 3589999999999999999999999999999999999999986 7799999999 9999999999999764 467999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++|++...+....++.+|+.+||.||+...+|...|.+++...
T Consensus 79 Ivlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888754
No 51
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.52 E-value=3.2e-13 Score=133.01 Aligned_cols=119 Identities=17% Similarity=0.293 Sum_probs=107.8
Q ss_pred ccEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
..+||||||++..+..+..+|... ++.+. .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~--~~~~ 78 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQI--QSTV 78 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHh--CCCC
Confidence 468999999999999999999877 58876 68899999999876 7899999999 9999999999999764 4679
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|||++|+........+++..|+++||.||+...+|..+|+.++++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 79 KVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred cEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999889999999999999999999999999999887753
No 52
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.51 E-value=1.4e-13 Score=153.94 Aligned_cols=120 Identities=31% Similarity=0.548 Sum_probs=111.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
..++||||||++..+..+..+|+.+||.|..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~--~~~~~ 79 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKAL--NPAIP 79 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCe
Confidence 34799999999999999999999999999999999999999976 6799999999 9999999999999864 47899
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|++...+...+++..|+.+||.||++..+|...|.+++++.
T Consensus 80 vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 80 VLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887753
No 53
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.51 E-value=9.8e-13 Score=116.18 Aligned_cols=122 Identities=26% Similarity=0.508 Sum_probs=110.2
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~-V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
+.++|||+|+++..+..+...|+..|++ +..+.++.++++.+.. ..||+||+|. +++++|+++++.|+.....+.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 4579999999999999999999999985 7789999999998876 6799999999 9999999999999876545678
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|+|+++..........++..|+++|+.||++..+|...+++++++.
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999888888899999999999999999999999999988764
No 54
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.50 E-value=1.5e-13 Score=131.96 Aligned_cols=113 Identities=18% Similarity=0.327 Sum_probs=106.1
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
..||||||..++..|...|+..||.|.+|.+.+|||..++. ..|...++|+ |-+.+|+++++.||+. ..+..||+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~gsGL~~i~~lr~~--~~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGDGSGLAVIEALRER--RADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecCCCchHHHHHHHhc--CCcceEEE
Confidence 68999999999999999999999999999999999999998 7888899999 9999999999999875 47899999
Q ss_pred EecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
+|++.+.....++.+.||++||.||-+.++++.++.+-
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999999999999999999999999999998877653
No 55
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.50 E-value=6.5e-13 Score=131.82 Aligned_cols=119 Identities=26% Similarity=0.471 Sum_probs=109.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
++||||||++..+..+..+|...|+.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~--~~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKR--GQTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999998876 6799999999 9999999999999764 3678999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
+++.........+++..|+++||.||+...+|...+..++++..
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~ 120 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999998888999999999999999999999999999887643
No 56
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.50 E-value=4.4e-13 Score=131.29 Aligned_cols=114 Identities=31% Similarity=0.379 Sum_probs=103.4
Q ss_pred cEEEEEecChhHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~-G~~V-~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++..+..+..+|... ++.+ ..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+ +.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~-----~~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP-----KGMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc-----cCCC
Confidence 58999999999999999999754 6764 588999999999976 6799999999 99999999999984 2579
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
||+++.....+....++..|+++||.||++.++|..+|+.++++
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998864
No 57
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.49 E-value=7.4e-13 Score=133.61 Aligned_cols=118 Identities=22% Similarity=0.396 Sum_probs=108.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|...|+.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+. ...+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~---~~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRR---FSDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCEE
Confidence 389999999999999999999999999999999999999976 6799999999 999999999999975 2568999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
+++..........++.+|+++||.||+...+|...|..++++..
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~ 129 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999988888899999999999999999999999999887653
No 58
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.49 E-value=4.9e-13 Score=136.35 Aligned_cols=115 Identities=24% Similarity=0.455 Sum_probs=99.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-~~V-~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++..+..+..+|+.++ +.+ ..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+.. ...+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~~ 76 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMPY 76 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCCE
Confidence 689999999999999999999887 344 478999999999986 6799999999 9999999999999532 2356
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
||++|++. +...+++..|+.+||.||+..++|..+|.++++..
T Consensus 77 ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 77 IVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred EEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 88888875 46678999999999999999999999999987653
No 59
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=4.5e-13 Score=150.68 Aligned_cols=118 Identities=29% Similarity=0.533 Sum_probs=109.3
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++..+..+..+|...||+|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~--~~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSH--ETRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 3489999999999999999999999999999999999999986 7799999999 9999999999999764 467999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|++|++.......+++..|+++||.||++.++|...|..++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999887654
No 60
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.47 E-value=5.8e-13 Score=144.87 Aligned_cols=115 Identities=26% Similarity=0.412 Sum_probs=98.4
Q ss_pred cEEEEEecChhHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALL-RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL-~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++||||||++..+..+..+| +..+|+++ .+.++++|++.+.. ..||+||+|+ ||+|+|++++++|++. ..+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 48999999999999999999 46689887 78999999999987 7899999999 9999999999999763 3589
Q ss_pred EEEEecCCC--HHHHHHHHhCCCCeEEeCCC---------CHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDS--MGLVFKCLSKGAVDFLVKPI---------RKNELKNLWQHVWR 207 (746)
Q Consensus 165 VI~LTa~~~--~~~~~~al~aGaddyL~KPi---------~~~eL~~~L~~vlr 207 (746)
||++++... .....+++..|+++||.||+ ..++|...|+.+.+
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 999998754 45677899999999999999 45566666666554
No 61
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.47 E-value=5e-13 Score=150.02 Aligned_cols=113 Identities=24% Similarity=0.360 Sum_probs=104.8
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCC-----CCHHHHHHHHHhccCCCCc
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-----mdGlellr~IR~~~~~~~i 163 (746)
||||||++..+..+...| .||+|..+.++.+|++.+.. ..|||||+|+ ||+ ++|+++++.|++. .+.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~--~~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAI--APDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh--CCCC
Confidence 699999999999999988 78999999999999999987 7899999999 996 8999999999764 4789
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|||++|+..+.+...+++..|+++||.||++.++|..+|++++..
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999887764
No 62
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.47 E-value=6.3e-13 Score=149.84 Aligned_cols=116 Identities=30% Similarity=0.502 Sum_probs=108.1
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~--~~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKR--HPQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHh--CCCCeEEEE
Confidence 6999999999999999999999999999999999999986 6799999999 9999999999999764 467999999
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|++.......+++.+|+++||.||+..++|...|.+++...
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 63
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.46 E-value=1e-12 Score=127.28 Aligned_cols=119 Identities=28% Similarity=0.452 Sum_probs=109.4
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
..+||||||++..+..+..+|...+|.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~--~~~~~i 78 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKAR--GSPLPV 78 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCE
Confidence 3589999999999999999999999999999999999998876 6799999999 9999999999999754 478999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|+++..........++..|+.+|+.||+...+|...+..++...
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999999887753
No 64
>PRK13435 response regulator; Provisional
Probab=99.45 E-value=1.8e-12 Score=122.38 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=104.6
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CC-CCCHHHHHHHHHhccCCC
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP-~mdGlellr~IR~~~~~~ 161 (746)
+..++|||+|+++..+..+...|...||.++ .+.++.++++.+.. ..|||||+|+ |+ +.+|+++++.++.. .
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 4567999999999999999999999999987 78999999998876 6799999999 97 58999999999653 4
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~~~ 213 (746)
.+|||+++.... ...++..|+++||.||++..+|...|++++.+....+
T Consensus 78 ~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 126 (145)
T PRK13435 78 GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVGDR 126 (145)
T ss_pred CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcccc
Confidence 789999998643 3467789999999999999999999999987665543
No 65
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.45 E-value=1.5e-12 Score=143.87 Aligned_cols=120 Identities=28% Similarity=0.410 Sum_probs=111.1
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.+||||||++..+..+..+|...||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 489999999999999999999999999999999999999986 7799999999 9999999999999875545689999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++|+........+++..|+++||.||++..+|..+|..+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 66
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.44 E-value=1.5e-12 Score=142.34 Aligned_cols=104 Identities=33% Similarity=0.577 Sum_probs=92.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~ 162 (746)
..++||||||++..+..+..+|+.. ++.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. .
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 4579999999999999999999887 88887 89999999999986 7899999999 99999999999998654 3
Q ss_pred ccEEEEecCCC--HHHHHHHHhCCCCeEEeCCCC
Q 004541 163 LPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPIR 194 (746)
Q Consensus 163 iPVI~LTa~~~--~~~~~~al~aGaddyL~KPi~ 194 (746)
+|||++|+... .....+++..|+++||.||+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 89999998643 456778999999999999994
No 67
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.40 E-value=6.4e-12 Score=122.24 Aligned_cols=119 Identities=17% Similarity=0.378 Sum_probs=106.4
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~ 162 (746)
..++||||||++..+..+..+|... ++.++ .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. .+.
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~ 77 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQR--WPA 77 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCC
Confidence 3478999999999999999999876 57655 78999999998876 7799999999 9999999999999864 367
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+|||++|+.........++..|+++||.||+...+|...+..+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 78 MNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999999999999999999999987654
No 68
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.40 E-value=6.6e-12 Score=123.29 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=106.0
Q ss_pred ccEEEEEecChhHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~-~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
.++||||||++..+..+...|+. .++.+. .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. .+.+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~--~~~~ 81 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRD--GVTA 81 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHh--CCCC
Confidence 46899999999999999999975 578876 69999999998876 6799999999 9999999999999764 3668
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|||+++..........++..|+++||.||++..+|..+|+.++++
T Consensus 82 ~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 82 QIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999998888888999999999999999999999999988754
No 69
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.38 E-value=1.3e-11 Score=121.54 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=106.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~ 162 (746)
...+||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~--~~~ 80 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLS 80 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHh--CCC
Confidence 3468999999999999999999875 67654 68999999999976 6799999999 9999999999999764 367
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+|||+++..........++..|+++||.||++..+|...|..+++.
T Consensus 81 ~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 81 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999999999999999999999998764
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.38 E-value=3.7e-12 Score=149.79 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=104.7
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
.++||||||++.++..+..+|...||.|..+.++.++++.+.. ..|||||+|+ ||+++|++++++|+.. .+.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~--~~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQT--TAVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhc--CCCCCE
Confidence 3689999999999999999999999999999999999999876 7799999999 9999999999999754 478999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN--ELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~--eL~~~L~~vlrr 208 (746)
|++|+..+.....+++..|+.+||.||.... .|..+++.++..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999997643 566666655544
No 71
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.35 E-value=9.3e-12 Score=135.38 Aligned_cols=102 Identities=36% Similarity=0.570 Sum_probs=91.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
+|||||||....|..|+++|...+ ++|+ ++.|+.+|++.+.+ ..||+|++|+ ||.|||++++++|++. ..+|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~p 76 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPLP 76 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCCc
Confidence 699999999999999999999998 5555 89999999999998 8899999999 9999999999999754 5799
Q ss_pred EEEEecCCC--HHHHHHHHhCCCCeEEeCCCC
Q 004541 165 VIMMSSLDS--MGLVFKCLSKGAVDFLVKPIR 194 (746)
Q Consensus 165 VI~LTa~~~--~~~~~~al~aGaddyL~KPi~ 194 (746)
|||+++... .+...+++++||.||+.||..
T Consensus 77 Vimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 77 VIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 999988655 456788999999999999984
No 72
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.33 E-value=1.3e-11 Score=127.08 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=95.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHH-HHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL-SKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlell-r~IR~~~~~~~ 162 (746)
...+||||||+|..+..|..+|+ .++.+. .+.++.++++.+. .|||||+|+ ||+++|++++ +.|+.. .+.
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~--~p~ 81 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRK--NNN 81 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHh--CCC
Confidence 44579999999999999999998 456544 7889999998753 499999999 9999999997 567644 478
Q ss_pred ccEEEEecCCCHHHHHHHHh--CCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 163 LPVIMMSSLDSMGLVFKCLS--KGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~--aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++||++|+..+. ...++. +||.+||.|+.+.++|.++|+.+++..
T Consensus 82 ~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 82 IKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred CcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999998763 344455 599999999999999999999988653
No 73
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.32 E-value=1.4e-11 Score=125.98 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=91.5
Q ss_pred HHHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCccEEE---Ecc-CCCCCHHHHHHHHHhccCCCCccEEEEecC
Q 004541 99 TRHVVAALLRN---CGYEVTEATNGLQAWKILEDLTNHIDLVL---TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 99 ~r~~L~~lL~~---~G~~V~~A~dG~EALe~L~~~~~~~DLVL---lDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
.|..+..+|.. .||.|..+.+++++++.+.. ..||+|| +|+ ||+++|++++++|++. .+.+|||++|++
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~~~iIvlt~~ 77 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADD 77 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHH--CCCCCEEEEeCC
Confidence 36788888965 46667799999999999876 6789998 677 8999999999999764 578999999998
Q ss_pred CCHHHHHHHH-hCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 172 DSMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 172 ~~~~~~~~al-~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
+.......++ ++||.+||.||+..++|..+|+.+++..
T Consensus 78 ~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 78 DIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred CCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 8776565555 7999999999999999999999998764
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.29 E-value=4.8e-11 Score=123.34 Aligned_cols=115 Identities=18% Similarity=0.285 Sum_probs=100.0
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR~~~~~~~i 163 (746)
..+||||||++..+..+...|+..|+.+. .+.++.++++.+.. ..|||||+|+ ||+ ++|+++++.++... .+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~~ 211 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTF---DV 211 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhC---CC
Confidence 45899999999999999999999999988 78999999999976 6799999999 995 89999999997643 79
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|||++|+...... .+...++.+||.||++.++|...|.+++..
T Consensus 212 pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 212 PVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred CEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999999776543 344567889999999999999999987765
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.27 E-value=3.6e-11 Score=120.23 Aligned_cols=122 Identities=22% Similarity=0.379 Sum_probs=105.5
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
..++||++||++..+..+...|...||.++ ++.++.++.+.+.. ..||+||+|+ ||..|-++-+.+. ......
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~---~~~~~~ 78 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLA---SENVAR 78 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHh---hcCCCC
Confidence 467999999999999999999999999877 78999999999987 8999999999 9999944443333 223567
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~~~ 212 (746)
|||++|++.+++.+..+.++|+.+||+||+++..|+..|.-+..++...
T Consensus 79 piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~ 127 (194)
T COG3707 79 PIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEER 127 (194)
T ss_pred CEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777766443
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.26 E-value=1e-10 Score=98.21 Aligned_cols=111 Identities=32% Similarity=0.563 Sum_probs=100.4
Q ss_pred EEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEe
Q 004541 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (746)
Q Consensus 91 LVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LT 169 (746)
||+|+++..+..+...|...|+.+..+.+..+++..+.. ..||+||+|. +++.+|+++++.|+.. .+.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 578999999999999999999999999999999998876 6799999999 9999999999999765 4678999999
Q ss_pred cCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 170 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 170 a~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
..........++..|+.+|+.||+...+|...+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 887778888999999999999999999999888754
No 77
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.25 E-value=7e-11 Score=120.65 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=96.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCccEEEEc--c-CCCCCHHHHHHHHHhccCCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTE--V-MPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G--~~V-~~A~dG~EALe~L~~~~~~~DLVLlD--i-MP~mdGlellr~IR~~~~~~ 161 (746)
+.||||||++.++..++.+|+..+ +.+ ..+.++.++++.+.. ..|||||+| . ||.++|++++++|++. .+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~--~p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQ--HP 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHH--CC
Confidence 359999999999999999998755 344 478999999998876 679999999 4 7777999999999754 47
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCe-EEeCCCCHHHHHHHHHHHHHHh
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGadd-yL~KPi~~~eL~~~L~~vlrr~ 209 (746)
.++||++|+..+..... ++..|+.. |+.|+.++++|..+|+.++...
T Consensus 77 ~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 77 NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 79999999998776543 55555544 8899999999999999987653
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.12 E-value=3.9e-10 Score=121.49 Aligned_cols=89 Identities=26% Similarity=0.477 Sum_probs=80.7
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCC-
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI- 193 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi- 193 (746)
.+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+....+...+++++|++|||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~--~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNR--GDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 57899999999986 7899999999 9999999999999865 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004541 194 RKNELKNLWQHVWRR 208 (746)
Q Consensus 194 ~~~eL~~~L~~vlrr 208 (746)
+.++|..+|.++++.
T Consensus 78 ~~~~L~~~i~~~l~~ 92 (303)
T PRK10693 78 DLNRLREMVFACLYP 92 (303)
T ss_pred cHHHHHHHHHHHhhh
Confidence 589999999887754
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.04 E-value=1.3e-09 Score=129.82 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred cEEEEEecChh--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHH----HHHHHH
Q 004541 88 LKVLLVENDDS--------TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV----ALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~--------~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGl----ellr~I 154 (746)
++||||||+.. .++.|...|+..||+|..+.++.+|++.+.. ...||+||+|+ ||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 37999999996 6999999999999999999999999999975 24799999999 9999997 899999
Q ss_pred HhccCCCCccEEEEecCCC--HHHHHHHHhCCCCeEEeCCCCHHHH-HHHHHHHHHHhcc
Q 004541 155 MSHKTRKNLPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPIRKNEL-KNLWQHVWRRCHS 211 (746)
Q Consensus 155 R~~~~~~~iPVI~LTa~~~--~~~~~~al~aGaddyL~KPi~~~eL-~~~L~~vlrr~~~ 211 (746)
|+. ..++||||+|+... .......++ -+++|+.+--+-.++ ...|....+++..
T Consensus 80 R~~--~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 136 (755)
T PRK15029 80 HER--QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRYRQ 136 (755)
T ss_pred Hhh--CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 863 46899999999986 333333333 357788886665554 4446666666643
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=2.2e-09 Score=112.63 Aligned_cols=115 Identities=27% Similarity=0.492 Sum_probs=100.4
Q ss_pred cEEEEEecChhHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~-G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
++|++|||++..++.|..+|... .+++. .+.++.++++.+.. ..+|++++|+ ||+++|+++++.|+.. .+..+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~~~G~ela~~i~~~--~~~~~ 77 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPDINGIELAARIRKG--DPRPA 77 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCccchHHHHHHhccc--CCCCe
Confidence 68999999999999999999843 34443 78999999999987 5999999999 9999999999999765 46678
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|+++|++. +....+++..+.|||.||+..+.|...+.+..+.
T Consensus 78 Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 78 IVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 99999987 5666777889999999999999999999987765
No 81
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.94 E-value=7.9e-09 Score=126.11 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCCCchhhHHHHHHHHHhc-----------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCCC
Q 004541 2 NVDGKADKRLQELNHCLQA-----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQE 70 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~-----------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~~ 70 (746)
.|+|+|+. ...+.++|.. .+....++||++|+++|||.+.+ .|.+|.|++|++.+|+.....
T Consensus 605 ~DtG~GI~-~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~I~v------~S~~g~GT~F~I~LPl~~~~~ 677 (894)
T PRK10618 605 LDTGAGVS-IKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGHLTI------KSREGLGTRYSIHLKMLAADP 677 (894)
T ss_pred EECCCCCC-HHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCEEEE------EECCCCcEEEEEEEEccCCcc
Confidence 48899986 4466666521 12233488999999998877655 677889999999999854322
Q ss_pred CCccccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CC
Q 004541 71 QPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (746)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP 143 (746)
.... .......+++||||||++.++.++..+|+.+|++|+.+.++. . ...|||||+|+ ++
T Consensus 678 ~~~~-----~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~--~~~~Dlvl~D~~~~ 738 (894)
T PRK10618 678 EVEE-----EEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------I--SQEYDIFLTDNPSN 738 (894)
T ss_pred cccc-----cccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------c--CCCCCEEEECCCCc
Confidence 2111 112235678999999999999999999999999999988642 2 26799999999 53
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.51 E-value=1.1e-06 Score=106.85 Aligned_cols=188 Identities=15% Similarity=0.087 Sum_probs=142.5
Q ss_pred CCCCchhhHHHHHHHHHhcC------------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCCC
Q 004541 2 NVDGKADKRLQELNHCLQAG------------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQ 69 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~~ 69 (746)
.|+|+|.. ...+.++|... +....++|+++++++|||.+ .+.|.+|.|++|++.+|+....
T Consensus 450 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i------~v~s~~~~Gt~f~i~lp~~~~~ 522 (919)
T PRK11107 450 RDTGIGIS-ERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDI------SFHSQPNRGSTFWFHLPLDLNP 522 (919)
T ss_pred EEeCCCcC-HHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEE------EEEecCCCCEEEEEEEEeccCC
Confidence 47888886 44566665221 22344899999999988765 4567788899999999876433
Q ss_pred CCCccccchhhhccCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHH
Q 004541 70 EQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148 (746)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGl 148 (746)
..... ........+.+||||||++..+..+..+|+.+||.|..+.++.+ +.. ..||++|+|+ ||++.+.
T Consensus 523 ~~~~~----~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~ 592 (919)
T PRK11107 523 NPIID----GLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPL 592 (919)
T ss_pred ccccc----cCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCH
Confidence 22111 11122346789999999999999999999999999999998888 333 6799999999 9988877
Q ss_pred HHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHH
Q 004541 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (746)
Q Consensus 149 ellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vl 206 (746)
..+............++|+++..........+...|+++||.||+...+|...+....
T Consensus 593 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 593 TMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 6655554333334567888888888888899999999999999999999999887655
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.11 E-value=2.4e-06 Score=96.11 Aligned_cols=92 Identities=33% Similarity=0.443 Sum_probs=82.6
Q ss_pred CEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 112 YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 112 ~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
++|.++..|.+|+..+.. ..+|++|+|+ ||+|+|+++++++++.... |+|+|.........+.+++|+++||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCCcc----eEEEEecCCCCcchhHHhhhhhhhcc
Confidence 467779999999999987 8999999999 9999999999999876533 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 004541 191 KPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 191 KPi~~~eL~~~L~~vlrr~ 209 (746)
||+....+...+..+.+..
T Consensus 87 ~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CCCChHHHHHhhhhhccch
Confidence 9999999998888776653
No 84
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.81 E-value=0.0001 Score=68.34 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=77.9
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
||||||||..-+..|..+|+=.|+++..+...+- ...... ..++.+++-. .+ ...++++.|.+ ..+.+|||
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~--~~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLK--WAPHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHh--hCCCCCEE
Confidence 6999999999999999999999999988876443 233333 4455555544 44 55677787744 35899999
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
++......... ..+.+-|..|++..+|.++|++.
T Consensus 74 llg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 74 LLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred EECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 99887765111 11677899999999999998874
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.58 E-value=0.00042 Score=50.23 Aligned_cols=54 Identities=41% Similarity=0.753 Sum_probs=48.7
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP 143 (746)
++|+++++++..+..+...|...|+++..+.+..+++..+.. ..+|+|++|+ ++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 379999999999999999999999999999999999998876 6799999998 64
No 86
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=97.34 E-value=8.8e-05 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhhcccccccC
Q 004541 725 REAAVTKYRQKKTERCFRKKEN 746 (746)
Q Consensus 725 reaal~kfr~krker~f~kkvr 746 (746)
|+++|.+||+|||.|||+||||
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkir 22 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIR 22 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCC
Confidence 7899999999999999999986
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.95 E-value=0.029 Score=54.22 Aligned_cols=118 Identities=12% Similarity=0.042 Sum_probs=91.4
Q ss_pred CccEEEEE----ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCCC--CHHHHHHHHH
Q 004541 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIM 155 (746)
Q Consensus 86 ~~lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~m--dGlellr~IR 155 (746)
+..+||+. |.+..-..++..+|+..||+|+. .-..++.++.+.+ ..+|+|.+-. |... .-.+++++|+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 44578888 88888889999999999999994 4467888888887 8899999998 7542 3457788887
Q ss_pred hccCCCCccEEEEecCC------CHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 156 SHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~------~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+.. .++++|+ +.+.. ..+...++.+.|++.++...-..+++...|++.|.
T Consensus 80 ~~~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 80 EAG-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred hcC-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 553 3456544 44433 45667789999999999999999999999888764
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.74 E-value=0.035 Score=52.25 Aligned_cols=111 Identities=11% Similarity=0.084 Sum_probs=81.8
Q ss_pred EEEEE----ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCCC--CHHHHHHHHHhcc
Q 004541 89 KVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHK 158 (746)
Q Consensus 89 rVLVV----DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~m--dGlellr~IR~~~ 158 (746)
|||+. |.+..=..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. ++.. .--+++++|++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 66777778889999999999984 3457788888887 7899999987 6532 2356777776642
Q ss_pred CCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHH
Q 004541 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 159 ~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~ 203 (746)
... +.|++.+....+...++.++|++.|+..=-..++....|+
T Consensus 79 -~~~-i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 -AGD-ILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred -CCC-CEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 223 4456666566677888999999999999888888776654
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.48 E-value=0.11 Score=50.13 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=81.2
Q ss_pred ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCC-CC-HHHHHHHHHhccCCCCccEEE
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~-md-Glellr~IR~~~~~~~iPVI~ 167 (746)
|-+..-..++..+|+..||+|+- ..+.++.++.+.+ ..+|+|.+-. |.. +. --++++.|++.. ...++ |+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g-~~~i~-vi 88 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLG-RPDIL-VV 88 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcC-CCCCE-EE
Confidence 55566668899999999999983 4578899999887 7899998876 532 22 245677776553 22444 45
Q ss_pred EecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+-+....+...+..++|+++|+..=-+..+....|.+.+.
T Consensus 89 vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 89 VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 5655556677889999999999988888888888877654
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.22 E-value=0.043 Score=51.30 Aligned_cols=107 Identities=20% Similarity=0.140 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-C-CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHH
Q 004541 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-M-P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~ 177 (746)
...|...|+..|++|+.+.+.++++.+++. ...++.||+|+ - ......++++.||.+. ..+||.+++.....+.+
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-~~~i~avvi~~d~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIES-FTDIAAVVISWDGEEEDEAQELLDKIRERN--FGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHC-TTTEEEEEEECHHHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHh-CCCeeEEEEEcccccchhHHHHHHHHHHhC--CCCCEEEEecCCCcccC
Confidence 356777788899999999999999999987 46789999987 1 1134578999997764 78999999987755555
Q ss_pred HHHHhCCCCeEEeCCCC-HHHHHHHHHHHHHHh
Q 004541 178 FKCLSKGAVDFLVKPIR-KNELKNLWQHVWRRC 209 (746)
Q Consensus 178 ~~al~aGaddyL~KPi~-~~eL~~~L~~vlrr~ 209 (746)
-...-.-+++|+-..-+ ++.+...|....+++
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~Y 115 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAARRY 115 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHHhC
Confidence 44555667888888665 444556677666553
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.90 E-value=0.079 Score=49.18 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=67.7
Q ss_pred ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCC--CCHHHHHHHHHhccCCCCccEEE
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~--mdGlellr~IR~~~~~~~iPVI~ 167 (746)
|.+..-..++..+|+..||+|+. ....++.++.+.+ ..||+|.+-. +.. ....++++.||+... .+++| +
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~-~~~~i-~ 85 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAGL-DDIPV-L 85 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcCC-CCCeE-E
Confidence 66667778899999999999974 3456778888887 7899999987 543 345778888876531 25555 4
Q ss_pred EecCCCHHHHHHHHhCCCCeEEeC
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+.+.........+...|+|.|+..
T Consensus 86 vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 86 VGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred EECCCCChhHHHHHHcCCeEEECC
Confidence 555555455567889999877653
No 92
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.34 E-value=0.33 Score=46.98 Aligned_cols=109 Identities=8% Similarity=0.005 Sum_probs=79.5
Q ss_pred cChhHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCccEEEEcc-CCC-CC-HHHHHHHHHhccCCCCccEEEE
Q 004541 95 NDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 95 Dd~~~r~~L~~lL~~~G~~V~---~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-md-Glellr~IR~~~~~~~iPVI~L 168 (746)
-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |.. +. --++.++|++.. ..++ +|++
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~g-l~~~-~viv 88 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAG-LEGI-LLYV 88 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCC-CCCC-EEEe
Confidence 344555788999999999998 45688999999987 7899999987 642 32 346677777654 2344 4666
Q ss_pred ecCC---CHH---HHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 169 SSLD---SMG---LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 169 Ta~~---~~~---~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
-+.. ..+ ...++.+.|++.++...-.++++...|++.|+
T Consensus 89 GG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 89 GGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 6631 111 24568899999999988889999999988764
No 93
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.45 E-value=0.32 Score=58.84 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=79.9
Q ss_pred cEEEEEecCh-hH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 88 LKVLLVENDD-ST-----RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 88 lrVLVVDDd~-~~-----r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
++||||+++- .+ ...|..-|+..||+|+.+.+..+++.+++. ...++.||+|+ -. ..++++.||.+ .
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~ 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQL--N 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHh--C
Confidence 3688887773 22 455677788899999999999999999985 57789999997 33 25688888765 4
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCC-HHHHHHHHHHHHHHhcc
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWRRCHS 211 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~-~~eL~~~L~~vlrr~~~ 211 (746)
.++||+++........+-...-.-++.|+.--.. .+.+...|.+..+++..
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 7899999977543332222222334556554333 44445557777766643
No 94
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.96 E-value=0.39 Score=58.04 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=78.1
Q ss_pred cEEEEEecCh-hH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 88 LKVLLVENDD-ST-----RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 88 lrVLVVDDd~-~~-----r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
++||||+++. .. ...|..-|++.||+|+.+.+..+++.+++. ...++.||+|+ -- ..+++..||.+ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~ 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKM--N 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecchh---hHHHHHHHHHh--C
Confidence 3678887662 11 456777788899999999999999999985 57789999997 31 25588888765 4
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCC-CHHHHHHHHHHHHHHhcc
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi-~~~eL~~~L~~vlrr~~~ 211 (746)
..+||+++........+-...-.-+++|+.--- +.+.+...|.+..+++..
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYID 126 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 789999997754333222222222345554332 344555557776666643
No 95
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.78 E-value=1.2 Score=42.86 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=76.3
Q ss_pred cChhHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCccEEEEcc-CCC-CC-HHHHHHHHHhccCCCCccEEEE
Q 004541 95 NDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 95 Dd~~~r~~L~~lL~~~G~~V~---~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-md-Glellr~IR~~~~~~~iPVI~L 168 (746)
-+..-..++..+|+..||+|+ ..-..++.++.+.+ ..+|+|.+-. |.. +. .-++++.||+.. ..++|| ++
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~v-iv 86 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAG-LKDILL-YV 86 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCeE-EE
Confidence 344556788999999999998 45678888998887 7899999987 643 43 356777787654 345554 45
Q ss_pred ecCC------CHHHHHHHHhCCCCeEEeCCCCHHHHHHHHH
Q 004541 169 SSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 169 Ta~~------~~~~~~~al~aGaddyL~KPi~~~eL~~~L~ 203 (746)
-+.. ..+...++.++|++.++...-.++++...|+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 5442 1344567899999999998888888877664
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.75 E-value=1.5 Score=42.99 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=84.6
Q ss_pred CccEEEE----EecChhHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCccEEEEccCCC---CCHHHHHHHHH
Q 004541 86 RSLKVLL----VENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEVMPC---LSGVALLSKIM 155 (746)
Q Consensus 86 ~~lrVLV----VDDd~~~r~~L~~lL~~~G~~V~---~A~dG~EALe~L~~~~~~~DLVLlDiMP~---mdGlellr~IR 155 (746)
+..|||| .|-+..-..++..+|+..||+|+ ...+.+|++....+ ...|+|.+-.+-+ ...-++.+.||
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 3456665 47777778999999999999998 57899999998866 6788887755221 22446677777
Q ss_pred hccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+.. ..+|. +++-+.-..++..+..+.|++.|+.--....+....|...+.
T Consensus 89 e~G-~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 89 EAG-VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HhC-CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 654 23443 456677777778888899999998777777776665555444
No 97
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.62 E-value=0.2 Score=54.58 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEec-CCCHHHHHHHHhCCCCeE
Q 004541 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 111 G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa-~~~~~~~~~al~aGaddy 188 (746)
|.+++.+.+..++-..+ ..-.+||+|. +-. .++..+ .+ +...||++.. ..+.+....++.+|+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 56677777766654433 3356899988 411 122222 22 2233554444 556888999999999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 004541 189 LVKPIRKNELKNLWQHVW 206 (746)
Q Consensus 189 L~KPi~~~eL~~~L~~vl 206 (746)
|.+|+...+|..+|.++.
T Consensus 69 l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 69 AVLPEAEGWLVELLADLD 86 (322)
T ss_pred eeCCCCHHHHHHHHHhhc
Confidence 999999999999998763
No 98
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.31 E-value=0.93 Score=46.36 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=71.5
Q ss_pred cEEEEE----ecChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CCCC--CHHHHHHHHHhc
Q 004541 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSH 157 (746)
Q Consensus 88 lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP~m--dGlellr~IR~~ 157 (746)
.+||+. |-+..=..++..+|+..||+|+.. ...++.++.+.+ ..||+|.+-. |+.. ...++++.||+.
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 478877 777777899999999999999842 356788888887 8899999998 7543 346778888776
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
....+++|++=-..-.. . -+...|||.|-.-
T Consensus 161 ~~~~~~~i~vGG~~~~~-~--~~~~~GaD~~~~d 191 (201)
T cd02070 161 GLRDKVKVMVGGAPVNQ-E--FADEIGADGYAED 191 (201)
T ss_pred CCCcCCeEEEECCcCCH-H--HHHHcCCcEEECC
Confidence 43346776654444433 2 4666799887643
No 99
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=92.82 E-value=0.31 Score=46.14 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-----HHHHHHHHhcc
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHK 158 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-----lellr~IR~~~ 158 (746)
+.+.+.++||-|.........+|..-+.+|+.-... ..+-. ..||++|+.+ .+-..- ..+.+.+.
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~--- 79 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALS--- 79 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccCh--hhhceeeecccccccCCchHHHHHHHHHHh---
Confidence 456799999999999999999999999999864432 22322 5799999998 654333 23333331
Q ss_pred CCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHH
Q 004541 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (746)
Q Consensus 159 ~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L 202 (746)
..+--|+.+-.+. .-..++..+.|+.++|.||++...|+..+
T Consensus 80 -mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 80 -MTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred -hhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 1222244443333 33466788999999999999999988733
No 100
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=90.81 E-value=0.13 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhhhccccc
Q 004541 724 DREAAVTKYRQKKTERCFRK 743 (746)
Q Consensus 724 ~reaal~kfr~krker~f~k 743 (746)
.|-|.|..|-||||+|.+.+
T Consensus 3 aRK~SLqRFLeKRK~R~~~~ 22 (27)
T PF09425_consen 3 ARKASLQRFLEKRKDRLAAK 22 (27)
T ss_dssp ---HHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHhhccC
Confidence 47899999999999998864
No 101
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=90.40 E-value=2 Score=44.66 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=72.8
Q ss_pred cEEEEE----ecChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CCC-CC-HHHHHHHHHhc
Q 004541 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSH 157 (746)
Q Consensus 88 lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP~-md-Glellr~IR~~ 157 (746)
.+|||. |.+..=..++..+|+..||+|+.. -..++.++.+.+ ..+|+|.+-. |+. +. -.++++.|++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNRR 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHhc
Confidence 478887 888888899999999999999843 357788888887 8899999998 753 33 35678888765
Q ss_pred cCCCCccEEEEecCCCHHHHHH---HHhCCCCeEEeCCC
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFK---CLSKGAVDFLVKPI 193 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~---al~aGaddyL~KPi 193 (746)
..+++|++=-+....+...+ +...|||.|-.-..
T Consensus 167 --~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 167 --GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred --CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 34777766555444444332 24579987765443
No 102
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=89.68 E-value=5.7 Score=40.30 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCC
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G--~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~ 161 (746)
+.--+++|+.+++..++.+..+++.|| |.|..+.+.+++++-++..+..+.|+..+. +.+ .++-++... ..
T Consensus 29 fGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~---~~- 102 (176)
T PRK03958 29 LGADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAH---RK- 102 (176)
T ss_pred cCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhh---cc-
Confidence 344589999999999999999999996 678899999999999985456688888888 655 444444321 11
Q ss_pred CccEEEEec-CCCHHHHHHHHhCCCCeEEeCCCC-HHHHHHHHHHHHHHh
Q 004541 162 NLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWRRC 209 (746)
Q Consensus 162 ~iPVI~LTa-~~~~~~~~~al~aGaddyL~KPi~-~~eL~~~L~~vlrr~ 209 (746)
.-|++++-+ ..-+. +.++. .||.+-+=+ +-...+++.=+|.|.
T Consensus 103 ~~p~LIvvGg~gvp~---evye~--aDynlgvg~qpHSvrAAlAI~LDRL 147 (176)
T PRK03958 103 GEPLLIVVGAEKVPR---EVYEL--ADWNVAVGNQPHSEVAALAVFLDRL 147 (176)
T ss_pred CCcEEEEEcCCCCCH---HHHhh--CCEEeccCCCChHHHHHHHHHHHHh
Confidence 335555544 33333 33332 345443222 224455555555554
No 103
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.58 E-value=2.5 Score=43.20 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=64.4
Q ss_pred ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCC-CCH-HHHHHHHHhccCCCCccEEE
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~-mdG-lellr~IR~~~~~~~iPVI~ 167 (746)
|.+..=..++..+|+..||+|+. -...++.++.+.+ ..||+|.+-+ |+. +.. .++++.||+......++|+
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~- 171 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFM- 171 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEE-
Confidence 45566667888999999999993 3466888888887 8899999998 653 333 5677888766444556655
Q ss_pred EecCCCHHHHHHHHhCCCCeEEe
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+-+..-.. .-+...|+|.|-.
T Consensus 172 vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 172 VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred EEChhcCH--HHHHHhCCcEEeC
Confidence 44443332 2456779998864
No 104
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.47 E-value=1 Score=46.09 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=56.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc---CCCCCH--HHHHHHHHhccCCCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSG--VALLSKIMSHKTRKN 162 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi---MP~mdG--lellr~IR~~~~~~~ 162 (746)
++|||||..+.+---|..+|+.+|++|.+..+....++.++. ..||+|++-- -|.-.| .++++++ ..+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~-----~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF-----AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh-----cCC
Confidence 589999999999999999999999999877766444445554 6789999976 454333 4454444 356
Q ss_pred ccEEEEec
Q 004541 163 LPVIMMSS 170 (746)
Q Consensus 163 iPVI~LTa 170 (746)
+||+-+.=
T Consensus 75 ~PiLGVCL 82 (191)
T COG0512 75 IPILGVCL 82 (191)
T ss_pred CCEEEECc
Confidence 89987754
No 105
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.28 E-value=2.1 Score=38.59 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEE--CCHHH-HHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEA--TNGLQ-AWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A--~dG~E-ALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPV 165 (746)
+||||-..+.....++.+|++.|++.... ..+.+ ....|...-...|+||+=. +.-.-.+...+++.-...++|+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT--DYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe--CCcChHHHHHHHHHHHHcCCcE
Confidence 48999998889999999999999999888 22222 2112332224568887643 2233344444444333467899
Q ss_pred EEEecCCCHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCL 181 (746)
Q Consensus 166 I~LTa~~~~~~~~~al 181 (746)
++.-...- ..+.+++
T Consensus 79 ~~~~~~~~-~~l~~~l 93 (97)
T PF10087_consen 79 IYSRSRGV-SSLERAL 93 (97)
T ss_pred EEECCCCH-HHHHHHH
Confidence 87754433 3444443
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.96 E-value=5.5 Score=36.48 Aligned_cols=92 Identities=21% Similarity=0.162 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CC-CC-CHHHHHHHHHhccCCCCccEEEEe
Q 004541 96 DDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CL-SGVALLSKIMSHKTRKNLPVIMMS 169 (746)
Q Consensus 96 d~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP-~m-dGlellr~IR~~~~~~~iPVI~LT 169 (746)
.+.-...+..+|++.||+|... .+.++.++.+.+ .+||+|.+-. +. .. ...++++.+|+. .++++||+ -
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~--~p~~~iv~-G 87 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKER--NPNIPIVV-G 87 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTT--CTTSEEEE-E
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhc--CCCCEEEE-E
Confidence 4566788999999999999865 345777788877 7899999987 53 33 346777777543 46666654 4
Q ss_pred cCCCHHHHHHHHh--CCCCeEEeCC
Q 004541 170 SLDSMGLVFKCLS--KGAVDFLVKP 192 (746)
Q Consensus 170 a~~~~~~~~~al~--aGaddyL~KP 192 (746)
+..-......+++ .|+|..+.-.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred CCchhcChHHHhccCcCcceecCCC
Confidence 4443444555665 6777665543
No 107
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.82 E-value=7.1 Score=39.48 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCC--------CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHH
Q 004541 110 CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (746)
Q Consensus 110 ~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~m--------dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~ 179 (746)
.+..+- .+.+..++++.+. ..+|+|.+.. .|.. .|++.+++|++. .+++||++..+- ..+.+.+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~v~a~GGI-~~~~i~~ 176 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA--VGDIPIVAIGGI-TPENAPE 176 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHH
Confidence 344443 4567777777665 4689999876 6543 368899998754 345999888776 5678889
Q ss_pred HHhCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004541 180 CLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (746)
Q Consensus 180 al~aGaddyL~-----KPi~~~eL~~~L~~vlr 207 (746)
++.+|++.+.. +.-++.+....+...+.
T Consensus 177 ~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~ 209 (212)
T PRK00043 177 VLEAGADGVAVVSAITGAEDPEAAARALLAAFR 209 (212)
T ss_pred HHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHh
Confidence 99999998874 44455555555554443
No 108
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=88.64 E-value=4.2 Score=49.64 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=82.5
Q ss_pred ccEEEEE----ecChhHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCCC--CHHHHHHHHHh
Q 004541 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~m--dGlellr~IR~ 156 (746)
..+|+|. |.+..-...+..+|+..||+|.. ..+.+++++.+.+ ..+|+|++-. +... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3456553 33444557788899999999973 3568899998887 7788888765 5332 35678888876
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.. ..+++ |++.+....+....+.++|+|+|+.-=.+..+++..+.+.+..
T Consensus 660 ~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 660 LG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred cC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 53 22343 3456553445557788999999999999988888888777743
No 109
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.17 E-value=3.6 Score=43.75 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=77.8
Q ss_pred ccEEEEEecChhHHHHHHHHHH------hCCCEEE--EECCHHHHHHHHHhcCCCccEEEEccCC---------CCCHHH
Q 004541 87 SLKVLLVENDDSTRHVVAALLR------NCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP---------CLSGVA 149 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~------~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP---------~mdGle 149 (746)
-+|+=|+.|+.....-+.+.++ +.||.|. ++.|...|-++.. -.+++| || +..-.+
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~---~G~~~v----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED---AGCAAV----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEe----CCCCcCCCCCCCCCCHH
Confidence 3577777766544433333332 3499888 4566666655544 367666 44 222278
Q ss_pred HHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004541 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 150 llr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~~ 210 (746)
+++.|++. .++|||+=.+-..++++.++++.|++.+|. |--++..+..++...+..-+
T Consensus 166 ~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 166 NLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 88998764 469999999999999999999999999865 55567777777777766543
No 110
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.39 E-value=4 Score=43.47 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=78.2
Q ss_pred ccEEEEEecChhHHHHHHHHH------HhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEccCC---------CCCHHH
Q 004541 87 SLKVLLVENDDSTRHVVAALL------RNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP---------CLSGVA 149 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL------~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP---------~mdGle 149 (746)
=+|+=|+.|+.....-+...+ -+.||.|. ++.|...|-++.. -.+|+| || +..-.+
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~---~G~~~v----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE---AGCAAV----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEe----CCCCcCCCCCCCCCCHH
Confidence 367777777664443333332 23499988 5566666655554 367666 44 222268
Q ss_pred HHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004541 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 150 llr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~~ 210 (746)
+++.|++. .++|||+=.+-..++++.++++.|++.+|. |--++..+..++...+...+
T Consensus 166 ~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 166 NLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 88998764 469999999999999999999999999865 55567777777777766543
No 111
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=85.73 E-value=3.4 Score=41.91 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=53.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-HHHHHHHHhccCCCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYE---VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKN 162 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~---V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-lellr~IR~~~~~~~ 162 (746)
-+|++||-++.....+++-|+.++.. .+...|...++..+......||||++|- --.... .+++..|.+......
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNE 145 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCC
Confidence 58999999999999999999998853 3456788888877744457899999997 333333 668888764433332
Q ss_pred ccEEEE
Q 004541 163 LPVIMM 168 (746)
Q Consensus 163 iPVI~L 168 (746)
--+|++
T Consensus 146 ~~~ii~ 151 (183)
T PF03602_consen 146 DGLIII 151 (183)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 234443
No 112
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=85.03 E-value=7 Score=39.39 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=62.0
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCccEEEEcc--CCCC-CHHHHHHHHHhccC
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKT 159 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~-------dG~EALe~L~~~~~~~DLVLlDi--MP~m-dGlellr~IR~~~~ 159 (746)
|||-|-|...+..+...-++.|.+++..+ +|+|.++++++.+..|=||++|- .++. .|-+.++.+-.++.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 67777788888888888899999998654 89999999999777777888886 6654 68888888866543
Q ss_pred CCCccEEEEecCC
Q 004541 160 RKNLPVIMMSSLD 172 (746)
Q Consensus 160 ~~~iPVI~LTa~~ 172 (746)
..=+-+|++.++.
T Consensus 83 IeVLG~iAVASnT 95 (180)
T PF14097_consen 83 IEVLGAIAVASNT 95 (180)
T ss_pred ceEEEEEEEEecC
Confidence 3333345555543
No 113
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.66 E-value=9.6 Score=41.38 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=64.0
Q ss_pred EEEEEecChhHHHHHHHHHHhC----C-CEEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCC
Q 004541 89 KVLLVENDDSTRHVVAALLRNC----G-YEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~----G-~~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~ 162 (746)
.|||-|++.... .+...++.. . ..|. .+.+.+||.+.+. ..+|+|++|-|+--+--++++.|++....++
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~---agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK---AGADIIMLDNMTPEEIREVIEALKREGLRER 231 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH---cCcCEEEECCCCHHHHHHHHHHHHhcCcCCC
Confidence 388888886655 455544432 1 2333 7899999999997 4689999999543333444455543221123
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
..|..|+.-..+.+.+....|+|.+-
T Consensus 232 -~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 -VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred -EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 36777888888999999999988543
No 114
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.02 E-value=1.8 Score=48.23 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=42.1
Q ss_pred CCCCchhh--HHHHHHHHH---------hcCCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADK--RLQELNHCL---------QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l---------~~~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
+|+|.|+- ....+...| ..++....++|++++++..||.|+. +|..|+|++|++++|....
T Consensus 380 ~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA------~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 380 SDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWA------ESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred ccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEE------ecccCCceEEEEEecccCc
Confidence 46777654 333344333 3344445599999999988777655 7778999999999987643
No 115
>PRK09303 adaptive-response sensory kinase; Validated
Probab=82.15 E-value=1.6 Score=48.67 Aligned_cols=58 Identities=9% Similarity=-0.063 Sum_probs=41.6
Q ss_pred CCCCchhhHHHHHHHHHhc----------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQA----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~----------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|+. ...+.++|.. .+....++|++++++.+||.+. +.|.+|.|++|++.+|..
T Consensus 311 ~D~G~GI~-~~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~------v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 311 CDTGPGIP-EEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVRVHYGQIW------VDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred EEcCCCCC-HHHHHHHccCceeCCCCCCCCcccccHHHHHHHHHHcCCEEE------EEecCCCccEEEEEEecC
Confidence 47899986 4466666632 1223458999999998877654 467778899999998863
No 116
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=80.79 E-value=3 Score=42.10 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=51.0
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--C-CCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--M-P~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.....-..|..+|+..|++|..+.+..--++.+.. ..||.||+-- | |..++. .+..|+.. ...+||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~~~~-~~~~i~~~--~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNEAGI-SLAVIRHF--ADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHhCCC-chHHHHHh--cCCCCEE
Confidence 8999999999999999999999999987755323344544 4678777743 3 333332 22333321 2468998
Q ss_pred EEec
Q 004541 167 MMSS 170 (746)
Q Consensus 167 ~LTa 170 (746)
-+.-
T Consensus 77 GIC~ 80 (191)
T PRK06774 77 GVCL 80 (191)
T ss_pred EECH
Confidence 8764
No 117
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=80.77 E-value=23 Score=36.55 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=60.3
Q ss_pred HHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--C------CCCCHHHHHHHHHhccCCCCccEEEE
Q 004541 99 TRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 99 ~r~~L~~lL~~-~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--M------P~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
....+...++. .++.+. .+.+.+++..+.. ..+|+|.+.. . .....++++++|++.- .+|||+.
T Consensus 106 ~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~ 179 (221)
T PRK01130 106 TLAELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAE 179 (221)
T ss_pred CHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEE
Confidence 33445555556 677665 5677888765544 4588886532 1 1223478889987542 6999999
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeC
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~K 191 (746)
.+-...+.+.+++..|++.++.=
T Consensus 180 GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 180 GRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEc
Confidence 98888999999999999987653
No 118
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=80.44 E-value=4.6 Score=40.82 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEc-c-C-CCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlD-i-M-P~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.....-..+..+|+.+|+++....+-...++.+.. ..||.||+- = + |.-++.+ ...|+.. ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~-~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGIS-LEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchh-HHHHHHh--ccCCCEE
Confidence 8999999999999999999999998876643322344443 468866552 2 2 3222332 3444332 2468998
Q ss_pred EEecCCCHHHHHHHHhCCC
Q 004541 167 MMSSLDSMGLVFKCLSKGA 185 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGa 185 (746)
-+.- +...-+...|.
T Consensus 77 GIC~----G~Qll~~~~GG 91 (188)
T TIGR00566 77 GVCL----GHQAMGQAFGG 91 (188)
T ss_pred EECH----HHHHHHHHcCC
Confidence 8764 33333444553
No 119
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.69 E-value=21 Score=32.46 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=58.4
Q ss_pred cEEEEEecChhHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccE
Q 004541 88 LKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~-~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPV 165 (746)
+||.||-=-..-+..+..+++. .+++++ .+....+..+.+.+. ..+. ++.|+ +.+-+.. .+-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~~----------~~ll~~~---~~D~ 65 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTDL----------EELLADE---DVDA 65 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESSH----------HHHHHHT---TESE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhHH----------HHHHHhh---cCCE
Confidence 3566666655555666666665 356655 333333333333221 2233 33332 2221111 1223
Q ss_pred EEEec--CCCHHHHHHHHhCCCCeEEeCCC--CHHHHHHHHHHHHHH
Q 004541 166 IMMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa--~~~~~~~~~al~aGaddyL~KPi--~~~eL~~~L~~vlrr 208 (746)
|+++. ....+...++++.|..-|+-||+ +.+++.++++.+-+.
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33333 33456788999999999999999 788888877765544
No 120
>PRK10604 sensor protein RstB; Provisional
Probab=79.52 E-value=2.8 Score=47.37 Aligned_cols=60 Identities=13% Similarity=-0.013 Sum_probs=43.0
Q ss_pred CCCCchhhHHHHHHHHHhcC------------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADKRLQELNHCLQAG------------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
.|+|+|.. ...+.++|... +.....+|++++++.+||. |.+++.++.|++|++.+|....
T Consensus 355 ~D~G~Gi~-~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~------i~v~s~~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 355 EDDGPGIP-PEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGS------VNCDESELGGARFSFSWPVWHN 426 (433)
T ss_pred EEcCCCCC-HHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCE------EEEEecCCCeeEEEEEEeCCCC
Confidence 47899886 45667766321 1123489999999988776 4556778899999999987653
No 121
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=79.46 E-value=3.5 Score=42.08 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=56.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--C-CCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--M-P~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.....-..|..+|++.|+++......+..++.+.. ..||.||+-- + |...+. ....|+.. ...+||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~~~~~-~~~~i~~~--~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPNEAGI-SMEVIRYF--AGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChHhCCC-chHHHHHh--cCCCCEE
Confidence 8999999999999999999999999887765444555544 5688888743 2 221121 22233221 2468998
Q ss_pred EEecCCCHHHHHHHHhCCCC
Q 004541 167 MMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGad 186 (746)
-+.- +...-+...|+.
T Consensus 77 GICl----G~Qlla~~lGg~ 92 (195)
T PRK07649 77 GVCL----GHQSIAQVFGGE 92 (195)
T ss_pred EEcH----HHHHHHHHcCCE
Confidence 7764 333334455543
No 122
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.39 E-value=21 Score=40.98 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=62.4
Q ss_pred CccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCC--HHHHHHHHHhcc
Q 004541 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS--GVALLSKIMSHK 158 (746)
Q Consensus 86 ~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~md--Glellr~IR~~~ 158 (746)
.+.+|+||+-|+. ..+.|..+-+.+|+.+..+.+..+....+... ..+|+||+|. +...+ .++.+..+....
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 4579999998874 22345555556788887778877777776653 4699999997 44333 344444443211
Q ss_pred CCCCccEEEEecCCCHHHHHHH----HhCCCCeEEeC
Q 004541 159 TRKNLPVIMMSSLDSMGLVFKC----LSKGAVDFLVK 191 (746)
Q Consensus 159 ~~~~iPVI~LTa~~~~~~~~~a----l~aGaddyL~K 191 (746)
..+.-.+++|++........++ -..+++.+|.-
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~T 365 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFT 365 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEe
Confidence 1222336777776665554433 23455555433
No 123
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=79.15 E-value=9.7 Score=34.93 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=52.0
Q ss_pred ecChhHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHHhccCCC-CccEEE
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRK-NLPVIM 167 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~A~---dG~EALe~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR~~~~~~-~iPVI~ 167 (746)
|.++.-...+..+|+..||++.... ..++.++.+.+ ..||+|.+-. +.. ...++.+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5667777889999999999998543 56667777776 7899999998 543 34566677776543 3 676665
Q ss_pred Eec
Q 004541 168 MSS 170 (746)
Q Consensus 168 LTa 170 (746)
=-.
T Consensus 86 GG~ 88 (125)
T cd02065 86 GGA 88 (125)
T ss_pred eCC
Confidence 443
No 124
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.92 E-value=23 Score=40.82 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=61.3
Q ss_pred CccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCC--HHHHHHHHHhcc
Q 004541 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS--GVALLSKIMSHK 158 (746)
Q Consensus 86 ~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~md--Glellr~IR~~~ 158 (746)
.+.+|+||+-|.. ....+..+.+..|+.+..+.+..++++.+.. ..+|+||+|. .+..+ -++-+..+....
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 4568999998862 1233444445557777767677777877765 6799999996 44333 333333332111
Q ss_pred --CCCCccEEEEecCCCHHHHHHHH----hCCCCeEE-eC
Q 004541 159 --TRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFL-VK 191 (746)
Q Consensus 159 --~~~~iPVI~LTa~~~~~~~~~al----~aGaddyL-~K 191 (746)
..+.-.+++|++.........++ ..|++.+| +|
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 11234577888877665544443 35666654 44
No 125
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=78.61 E-value=15 Score=34.31 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc-CCCC-CHHHHHHHHHhccCCCCccEEEEecCCC
Q 004541 98 STRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 98 ~~r~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi-MP~m-dGlellr~IR~~~~~~~iPVI~LTa~~~ 173 (746)
.-...+..+|++.|+.+.. ....++.++.+.. ...||+|.+-+ -+.. ..+++++.||+. .++++||+--.+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~pdiv~~S~~~~~~~~~~~~~~~ik~~--~p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE-LLKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH-hcCCCEEEEeeccccHHHHHHHHHHHHHH--CCCCEEEECCcchh
Confidence 3456788999999988764 3355666666653 15899999988 3333 467889999765 46777765544433
Q ss_pred HHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 174 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 174 ~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
......+..-..||+..=--...|...+..+
T Consensus 80 -~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 80 -FFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred -hCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 2233323334456777643334455555543
No 126
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=77.73 E-value=9.2 Score=38.72 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc--CCCC----CHHHHHHHHHhccCCCCccEEEEecCCC
Q 004541 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL----SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 102 ~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi--MP~m----dGlellr~IR~~~~~~~iPVI~LTa~~~ 173 (746)
.+...|+..||.+.. +..+...++.+.. ..||.|-+|. +-.+ ....+++.|.......+++| ++++-.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecCC
Confidence 355556778998875 4567777788876 6799999996 3333 23556666544332344555 5688888
Q ss_pred HHHHHHHHhCCCC----eEEeCCCCH
Q 004541 174 MGLVFKCLSKGAV----DFLVKPIRK 195 (746)
Q Consensus 174 ~~~~~~al~aGad----dyL~KPi~~ 195 (746)
.+....+...|++ .|+.||...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 8899999999985 356677754
No 127
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.62 E-value=32 Score=31.10 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=60.1
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~-dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
...+|++||.++..... ++..|+.++... .-.+.|+.+.- ...+.||+..--+..-+.++..+|+. .+.++
T Consensus 20 ~~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d~~n~~~~~~~r~~--~~~~~ 91 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDDEENLLIALLAREL--NPDIR 91 (116)
T ss_dssp TTSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSHHHHHHHHHHHHHH--TTTSE
T ss_pred CCCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCCHHHHHHHHHHHHHH--CCCCe
Confidence 34689999999877433 445567766533 23445655543 56788888663334456777777654 46678
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
||+... +......+..+|++.++.
T Consensus 92 ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 92 IIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 877665 445667778899987653
No 128
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.50 E-value=23 Score=37.66 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred cEEEEEecChhH----HHH--HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-----HHHHHH
Q 004541 88 LKVLLVENDDST----RHV--VAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~----r~~--L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-----lellr~ 153 (746)
+|+=|+.|+... .+. ..+.|-+.||.|. +..|..-|-++..- .. .+||-+ -|--+| ...++.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~---Gc-aavMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA---GC-AAVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT---T--SEBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC---CC-CEEEecccccccCcCCCCHHHHHH
Confidence 567777776432 232 3456678899998 34455555444432 22 245555 565444 467888
Q ss_pred HHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 004541 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 154 IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr 208 (746)
|++.. ++|||+=.+-..+.+...+++.|++.+|. +--++-.+..+.+..+.-
T Consensus 170 i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 170 IIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 87653 79999999999999999999999999986 455666677666665553
No 129
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=77.42 E-value=22 Score=36.14 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=54.4
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~--V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
+|..||.++.....++.-++..++. +. ...|..+++..+......+|+|++|- .....-.+++..|........--
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTV 153 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCe
Confidence 7999999999999999999888763 33 45566666654432123489999998 64433456677665443334444
Q ss_pred EEEEec
Q 004541 165 VIMMSS 170 (746)
Q Consensus 165 VI~LTa 170 (746)
||++-.
T Consensus 154 iiv~E~ 159 (189)
T TIGR00095 154 LIVVEE 159 (189)
T ss_pred EEEEEe
Confidence 565544
No 130
>PRK13566 anthranilate synthase; Provisional
Probab=77.14 E-value=9.9 Score=46.53 Aligned_cols=81 Identities=28% Similarity=0.401 Sum_probs=54.9
Q ss_pred cCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc---CCC-CCHHHHHHHHHhcc
Q 004541 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPC-LSGVALLSKIMSHK 158 (746)
Q Consensus 83 ~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi---MP~-mdGlellr~IR~~~ 158 (746)
.+..+.+|||||....+...|..+|+..|++|..+..... .+.+.. ..||.||+=- .|. ..-.++++++.
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~--- 595 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAAL--- 595 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHH---
Confidence 3456789999999999999999999999999987665432 233333 4689887721 221 12344555442
Q ss_pred CCCCccEEEEec
Q 004541 159 TRKNLPVIMMSS 170 (746)
Q Consensus 159 ~~~~iPVI~LTa 170 (746)
..++||+-+.-
T Consensus 596 -~~~iPILGICl 606 (720)
T PRK13566 596 -ARNLPIFGVCL 606 (720)
T ss_pred -HCCCcEEEEeh
Confidence 24699988775
No 131
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.29 E-value=50 Score=35.37 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=64.4
Q ss_pred EEEEec-ChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--C--CCCCHHHHHHHHHhccCCCCc
Q 004541 90 VLLVEN-DDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 90 VLVVDD-d~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--M--P~mdGlellr~IR~~~~~~~i 163 (746)
.|++.+ .+.....+....+.+|.++. .+.+.+|+...+. ..+|+|-+.- + -..+ ++.+.+|...- ...+
T Consensus 138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~~-p~~~ 212 (260)
T PRK00278 138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPLI-PSDR 212 (260)
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHhC-CCCC
Confidence 344444 34455555556667898876 6889988866554 4577776442 2 1222 66667775431 1246
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
++|..++-...+.+.+++..|++.+|.
T Consensus 213 ~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 899999999999999999999999764
No 132
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=75.78 E-value=63 Score=34.88 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=77.0
Q ss_pred cEEEEEecCh-------hHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-----HHHHH
Q 004541 88 LKVLLVENDD-------STRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLS 152 (746)
Q Consensus 88 lrVLVVDDd~-------~~r~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-----lellr 152 (746)
+|+=|+-|+. .+.+ ..+.|-+.||.|.. ..|..-|-++ .+. .. .+||-+ -|--+| ...++
T Consensus 108 IKLEVi~D~~~LlPD~~etl~-Aae~Lv~eGF~VlPY~~~D~v~a~rL-ed~--Gc-~aVMPlgsPIGSg~Gl~n~~~l~ 182 (267)
T CHL00162 108 VKLEVISDPKYLLPDPIGTLK-AAEFLVKKGFTVLPYINADPMLAKHL-EDI--GC-ATVMPLGSPIGSGQGLQNLLNLQ 182 (267)
T ss_pred EEEEEeCCCcccCCChHHHHH-HHHHHHHCCCEEeecCCCCHHHHHHH-HHc--CC-eEEeeccCcccCCCCCCCHHHHH
Confidence 4666664432 2233 33455578999984 3455445444 432 22 355555 564443 45677
Q ss_pred HHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004541 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 153 ~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~~ 210 (746)
.|++. .++|||+=.+-...+++.++++.|+++.|. |--++.++..+++..+.--+
T Consensus 183 ~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 183 IIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 88664 569999999999999999999999999864 66788888888888776543
No 133
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=75.72 E-value=5.6 Score=40.24 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--C-CCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--M-P~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.....-..|..+|+..|+++..+.+-+..++.+.. ..||.||+-- + |..++. ....++. ....+||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~-~~~~~~~--~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGI-SLDVIRH--YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCc-cHHHHHH--hcCCCCEE
Confidence 8999999999999999999999998877665323444443 4688887754 2 333332 2233332 13568998
Q ss_pred EEecCCCHHHHHHHHhCCCC
Q 004541 167 MMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGad 186 (746)
-+.- +...-+...|+.
T Consensus 77 GICl----G~Q~la~a~Gg~ 92 (187)
T PRK08007 77 GVCL----GHQAMAQAFGGK 92 (187)
T ss_pred EECH----HHHHHHHHcCCE
Confidence 7764 444455566654
No 134
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=75.51 E-value=11 Score=38.15 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE-cc-C-CCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT-EV-M-PCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl-Di-M-P~mdGlellr~IR~~~~~~~iP 164 (746)
+||||||..+..-..+..+|+..|+++..+.....-.+.+ ..+|.||+ -= + |... -.+.+.|+. ....+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l----~~~d~iIi~gGp~~~~~~-~~~~~~i~~--~~~~~P 74 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV----ENFSHILISPGPDVPRAY-PQLFAMLER--YHQHKS 74 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHh----ccCCEEEECCCCCChHHh-hHHHHHHHH--hcCCCC
Confidence 5899999988888889999999999887665321112333 24776664 22 2 2111 133455543 235689
Q ss_pred EEEEec
Q 004541 165 VIMMSS 170 (746)
Q Consensus 165 VI~LTa 170 (746)
|+-+.-
T Consensus 75 iLGICl 80 (190)
T PRK06895 75 ILGVCL 80 (190)
T ss_pred EEEEcH
Confidence 887764
No 135
>PRK05637 anthranilate synthase component II; Provisional
Probab=75.44 E-value=10 Score=39.20 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=50.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHHHhccCCCCccE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~IR~~~~~~~iPV 165 (746)
.+|||||....+-..|..+|+.+|+.+..+..... ++.+.. ..||.||+-- +---+..+..+.|+.. ...+||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIlsgGPg~~~d~~~~~~li~~~--~~~~Pi 76 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLSPGPGHPRDAGNMMALIDRT--LGQIPL 76 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEeCCCCCHHHhhHHHHHHHHH--hCCCCE
Confidence 48999999999999999999999998887765322 333433 4678887732 2111222223344321 246899
Q ss_pred EEEec
Q 004541 166 IMMSS 170 (746)
Q Consensus 166 I~LTa 170 (746)
+-+.-
T Consensus 77 LGICl 81 (208)
T PRK05637 77 LGICL 81 (208)
T ss_pred EEEcH
Confidence 87764
No 136
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.97 E-value=21 Score=36.02 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhC
Q 004541 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 183 (746)
Q Consensus 105 ~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~a 183 (746)
...+.++..++ -+.+.+|+.+.++ ..+|+|-++-++.. |.++++.|+.. .+++|++++-+- ..+.+.+++++
T Consensus 91 ~~~~~~~~~~i~gv~t~~e~~~A~~---~Gad~i~~~p~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~ 163 (190)
T cd00452 91 KAANRAGIPLLPGVATPTEIMQALE---LGADIVKLFPAEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAA 163 (190)
T ss_pred HHHHHcCCcEECCcCCHHHHHHHHH---CCCCEEEEcCCccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHC
Confidence 33444555544 5779999988876 46899988654444 99999999643 456898887776 67888999999
Q ss_pred CCCeEEeC
Q 004541 184 GAVDFLVK 191 (746)
Q Consensus 184 GaddyL~K 191 (746)
|++.+-.-
T Consensus 164 G~~~v~v~ 171 (190)
T cd00452 164 GVVAVGGG 171 (190)
T ss_pred CCEEEEEc
Confidence 98876543
No 137
>PRK10364 sensor protein ZraS; Provisional
Probab=74.85 E-value=4.9 Score=45.46 Aligned_cols=59 Identities=15% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCCCchhhHHHHHHHHHhcC------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQAG------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|+|.. ...+.+.|... +....++|++++++.+||.+. +.+.+|.|++|++.+|...
T Consensus 386 ~D~G~Gi~-~~~~~~if~~~~~~k~~g~GlGL~iv~~~v~~~gG~i~------i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 386 TDSGKGIA-ADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQ------VASQEGKGATFTLWLPVNI 450 (457)
T ss_pred EECCCCCC-HHHHHHHhCccccCCCCCCcccHHHHHHHHHHCCCEEE------EEeCCCCcEEEEEEecCCC
Confidence 47899875 34556666332 233458999999998777654 4667789999999998753
No 138
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=74.84 E-value=50 Score=33.87 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=54.6
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEc-c-C-CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHh
Q 004541 107 LRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTE-V-M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS 182 (746)
Q Consensus 107 L~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlD-i-M-P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~ 182 (746)
....|..+. .+.+.+++.+.++ ..+|+|.+- . . ....+++++++|++.- ..++|||+..+-...+.+.+++.
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~---~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~-~~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALA---LGAKIIGINNRDLKTFEVDLNTTERLAPLI-PKDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHH---cCCCEEEEeCCCccccCcCHHHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHH
Confidence 345688765 5667777655554 356766544 2 1 1123457888886431 14689999999999999999999
Q ss_pred CCCCeEEe
Q 004541 183 KGAVDFLV 190 (746)
Q Consensus 183 aGaddyL~ 190 (746)
+|++.++.
T Consensus 193 ~Ga~gviv 200 (217)
T cd00331 193 AGADAVLI 200 (217)
T ss_pred cCCCEEEE
Confidence 99998863
No 139
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=74.38 E-value=52 Score=36.64 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=67.0
Q ss_pred EEEEEe----cChhHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHhcCCCccEEEEccCCC------------CC--H
Q 004541 89 KVLLVE----NDDSTRHVVAALLRNCG-YEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--G 147 (746)
Q Consensus 89 rVLVVD----Dd~~~r~~L~~lL~~~G-~~V~~--A~dG~EALe~L~~~~~~~DLVLlDiMP~------------md--G 147 (746)
.+|+|| +.....+.++.+=+.+. ..|+. +.+.++|..++. ..+|+|++-+-|+ .. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH---cCcCEEEECCCCCcccccccccCCCCCccH
Confidence 688886 33444455555544553 45553 789999988776 4688877443222 12 4
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+.+++.+++. .++|||+-.+-....++.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 5567777643 3599999999999999999999999987754
No 140
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.08 E-value=42 Score=34.58 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCccEEEEcc--C------CCCCHHHHHHHHHhccCCCCccEEEEecCC
Q 004541 103 VAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 103 L~~lL~~~G-~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--M------P~mdGlellr~IR~~~~~~~iPVI~LTa~~ 172 (746)
+...++..+ ..+. .+.+.+++..... ..+|+|.+-. + .....+++++.|++.. ++|||+..+-.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCC
Confidence 333344444 5544 5677888866554 4588775431 1 1223578899997542 69999999888
Q ss_pred CHHHHHHHHhCCCCeEEeC
Q 004541 173 SMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 173 ~~~~~~~al~aGaddyL~K 191 (746)
+.+.+.+++..|++.++.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999988753
No 141
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=74.06 E-value=33 Score=40.10 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCccEEEEcc-CCCC-CHHHHHHHHHhccCCCCccEE
Q 004541 96 DDSTRHVVAALLRNCG-YEVTEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 96 d~~~r~~L~~lL~~~G-~~V~~A~------dG~EALe~L~~~~~~~DLVLlDi-MP~m-dGlellr~IR~~~~~~~iPVI 166 (746)
.|.-...|...|+..| ++|.... +.++..+.+.+ ..||||.+-. -+.. ...++++.+|+. .++++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~--~P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARER--LPNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHH--CCCCEEE
Confidence 4667788999999999 6777543 33445566665 6899999977 4544 346788888754 4677776
Q ss_pred EEecCCCHHHHHHHHh-CCCCeEEeCCCCHHHHHHHHHHH
Q 004541 167 MMSSLDSMGLVFKCLS-KGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~-aGaddyL~KPi~~~eL~~~L~~v 205 (746)
+=-.+.. -...+++. ....||++.=--...|.+++..+
T Consensus 97 ~GG~h~t-~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPT-FMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcC-cCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 5444433 23345554 34456777755555566666554
No 142
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=73.95 E-value=5.1 Score=47.66 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=42.0
Q ss_pred CCCCchhh--HHHHHHHHHhcCCCCCc-------ccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADK--RLQELNHCLQAGSKRDE-------NAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~~~~~~~~-------~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
.|+|.|+. -..+|...|++....++ .+|++.|++..+|.| +++|++|.|.+|.+++|...+
T Consensus 675 ~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i------~vEs~~gEgsTF~f~lp~~~~ 744 (750)
T COG4251 675 RDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRI------WVESTPGEGSTFYFTLPVGGE 744 (750)
T ss_pred cCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHhCceE------EEeecCCCceeEEEEeecCCc
Confidence 36677664 33455555555555444 899999999876655 557778888899888886543
No 143
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=73.54 E-value=18 Score=37.09 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=42.2
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEcc-CC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP 143 (746)
..++++||-|.....+|.+-++.+++ ++. ...|...+|..+.. ...||||++|- -.
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVflDPPy~ 125 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVFLDPPYA 125 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEEeCCCCc
Confidence 45899999999999999999998873 333 44555566666654 22499999998 54
No 144
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=73.31 E-value=5.3 Score=46.14 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=41.8
Q ss_pred CCCCchhhHHHHHHHHHhcC---------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQAG---------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~---------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|+|.. ...+.++|... +.....+|++++++.++|.+ .+.|..|.|++|++.+|...
T Consensus 474 ~D~G~Gi~-~~~~~~iF~~~~~tk~~~~~g~GlGL~ivk~iv~~~~G~i------~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 474 ADQGCGVP-ESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVI------TLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred EeCCCCcC-HHHHHHHhCCCCCCCCCCCCCceeCHHHHHHHHHHcCCEE------EEEECCCCeEEEEEEECCCC
Confidence 47899886 33555666221 22345899999999877754 55778899999999998753
No 145
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=73.27 E-value=28 Score=38.15 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=62.5
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--CCC----CCHHHHHHHHHhccCCCCccEEEEecCCCHH
Q 004541 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPC----LSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (746)
Q Consensus 103 L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--MP~----mdGlellr~IR~~~~~~~iPVI~LTa~~~~~ 175 (746)
+...|+..|..|. .+.+.++|.++.+ ..+|.|++.- .-+ ..-++++.++++. -++|||+--+-.+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 5666777788776 5788888876665 4689898853 222 2348888988753 359999998999989
Q ss_pred HHHHHHhCCCCeEEeC
Q 004541 176 LVFKCLSKGAVDFLVK 191 (746)
Q Consensus 176 ~~~~al~aGaddyL~K 191 (746)
.+.+++..|++.++.=
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 9999999999987643
No 146
>PLN02335 anthranilate synthase
Probab=73.04 E-value=9.1 Score=39.94 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--C-CCCCHHHHHHHHHhccCCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--M-P~mdGlellr~IR~~~~~~~ 162 (746)
...+|||||.....-..|..+|+.+|+++..+......++.+.. ..||.||+-- | |.-.+ ..++.++.. ...
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~--~~~ 91 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLEL--GPL 91 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHh--CCC
Confidence 34589999987778888999999999988876543212333333 4577777643 4 43223 234555432 356
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCC
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGad 186 (746)
+||+-+.- +...-+...|..
T Consensus 92 ~PiLGICl----G~QlLa~alGg~ 111 (222)
T PLN02335 92 VPLFGVCM----GLQCIGEAFGGK 111 (222)
T ss_pred CCEEEecH----HHHHHHHHhCCE
Confidence 89987764 233334445543
No 147
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=72.97 E-value=6.1 Score=45.17 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=42.5
Q ss_pred CCCCchhhHHHHHHHHHhc------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|+|.. ...+.++|.. .+....++||+++++.+||.+ .+.+.+|.|++|++.+|...
T Consensus 473 ~D~G~gi~-~~~~~~iF~~~~~~~~~g~GlGL~iv~~iv~~~~G~i------~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 473 SDDGPGIA-PDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSI------AVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred EECCCCCC-HHHHHHHHhCCCccCCCCCcCcHHHHHHHHHHcCCEE------EEEeCCCCcEEEEEEEeCCC
Confidence 47899875 4466666632 233445899999999876654 55677899999999998753
No 148
>PRK14974 cell division protein FtsY; Provisional
Probab=72.81 E-value=30 Score=38.57 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=57.7
Q ss_pred CccEEEEEecCh---hHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCccEEEEcc--CCCCC--HHHHH
Q 004541 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV--MPCLS--GVALL 151 (746)
Q Consensus 86 ~~lrVLVVDDd~---~~r~~L~~lL~~~G~~V~~A~dG-------~EALe~L~~~~~~~DLVLlDi--MP~md--Glell 151 (746)
.+.+|+|++-|. ...+.+..+....|+.+.....+ .+|++.+.. ..+|+||+|. +...+ =++-+
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~~~~lm~eL 244 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHTDANLMDEL 244 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCCcHHHHHHH
Confidence 457899998773 33455666667778777654432 245555554 5689999998 32212 23333
Q ss_pred HHHHhccCCCCccEEEEecCCCHHHHHH---HH-hCCCCeEEeC
Q 004541 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFK---CL-SKGAVDFLVK 191 (746)
Q Consensus 152 r~IR~~~~~~~iPVI~LTa~~~~~~~~~---al-~aGaddyL~K 191 (746)
+.|... ..++.-++++.+....+.... +. ..+++.++.-
T Consensus 245 ~~i~~~-~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 245 KKIVRV-TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHh-hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 444221 235555677766554443322 22 3577775443
No 149
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=72.76 E-value=27 Score=42.20 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc-C-CCC----CHHHHHHHHHhccCCCCccEEEEecCC
Q 004541 101 HVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi-M-P~m----dGlellr~IR~~~~~~~iPVI~LTa~~ 172 (746)
......|+..||.+.. +.++...+..|.. -.+|.|-+|. + -++ ....+++.|.......++.| +..+-.
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcCC
Confidence 4455567888999875 5688888888887 6799999997 3 332 23455666643322344555 467888
Q ss_pred CHHHHHHHHhCCCC----eEEeCCCCHHHHHHHHHHH
Q 004541 173 SMGLVFKCLSKGAV----DFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 173 ~~~~~~~al~aGad----dyL~KPi~~~eL~~~L~~v 205 (746)
+.+....+.+.|++ .|+.||...++|...|+.+
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 88889999999997 3688999999999866554
No 150
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=72.63 E-value=36 Score=35.93 Aligned_cols=56 Identities=11% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCC------HHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~------~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
++++++.+|+. ..+||++|+-... ...+.++.++|+++++.-.+.++++...+..+
T Consensus 64 ~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 45566666543 3689998887553 56788899999999998666666665555444
No 151
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=72.49 E-value=17 Score=39.54 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=63.3
Q ss_pred EEEEEecChhHHHHHHHHHHh----CCCEE--E-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAALLRN----CGYEV--T-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~----~G~~V--~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
-|||=|.+-...-.+...+++ .+|.+ . .+++.+|+.+.+. ..+|+|++|-|+--.--++++.+ ...
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~---agaDiImLDNm~~e~~~~av~~l----~~~ 232 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE---AGADIIMLDNMSPEELKEAVKLL----GLA 232 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---cCCCEEEecCCCHHHHHHHHHHh----ccC
Confidence 377777766655545555543 46633 3 7899999999997 47999999985433333444443 123
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
.-.++=.|+.-..+.+..+...|+|-+
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 233 GRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 345677899999999999999998743
No 152
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=72.27 E-value=3.8 Score=46.03 Aligned_cols=58 Identities=7% Similarity=-0.097 Sum_probs=40.7
Q ss_pred CCCCchhhHHHHHHHHHhcC------------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG------------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|.. ...+.++|... +....++||+++++.+||.+ .+.|.+|.|++|++.+|..
T Consensus 355 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i------~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 355 EDNGPGIA-PEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRL------EIESEVGKGTRFSFVLPER 424 (430)
T ss_pred EEcCCCCC-HHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEE------EEEecCCCceEEEEEechH
Confidence 47899875 44555555221 22344899999999877765 4467788999999998854
No 153
>PRK12704 phosphodiesterase; Provisional
Probab=71.97 E-value=6.4 Score=46.36 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=38.5
Q ss_pred cEEEEecCCCHH--HHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMG--LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~--~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.+|+||+.+... ....++..++.|++.||++++++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 378899987765 788899999999999999999999988876654
No 154
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=71.93 E-value=38 Score=38.75 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=64.6
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEE
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI 166 (746)
.++++||-|-+. +..|+++.+.......-.-..++..+++.. .|++|+=...+.-|+-+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~~E~~g~~vlEAmA-----~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSESETLGFVVLEAMA-----SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCcccccCcHHHHHHH-----cCCCEE
Confidence 467777776553 344555544332222223344666666654 5666653322333566777762 458998
Q ss_pred EEecCCCHHHHHHHHhC---CCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 167 MMSSLDSMGLVFKCLSK---GAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~a---GaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+..... ..+.+.. |-.++|..|-++++|.+.|.+++.
T Consensus 360 ~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 543322 2334444 788999999999999999998874
No 155
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=71.68 E-value=38 Score=35.47 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=52.1
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEcc-CCCC-CH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~DLVLlDi-MP~m-dG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
..+..+.++.+.. ..-.|+++|+ .-++ .| +++++.|.+. ..+||++-.+-.+.+++.+++..|++..+.
T Consensus 145 ~~~~~~~~~~~~~--~~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 145 FIGPEELLRRLAK--WPEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred cCCHHHHHHHHHH--hCCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3456777777776 3224899998 5442 33 6778888653 468999999999999999999999998874
No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=71.66 E-value=38 Score=33.24 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=51.7
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC--------CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHH
Q 004541 111 GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (746)
Q Consensus 111 G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~--------mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~a 180 (746)
+..+. .+.+..++.+.+. ..+|+|++.. .|. ..+++.++++++. .++||+++.+-. .+.+.++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~-~~~i~~~ 167 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGIT-PENAAEV 167 (196)
T ss_pred CCEEEeeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHH
Confidence 44443 3456777766655 3589999876 543 3567888888654 468999887764 5788899
Q ss_pred HhCCCCeEEe
Q 004541 181 LSKGAVDFLV 190 (746)
Q Consensus 181 l~aGaddyL~ 190 (746)
+.+|++.+..
T Consensus 168 ~~~Ga~~i~~ 177 (196)
T cd00564 168 LAAGADGVAV 177 (196)
T ss_pred HHcCCCEEEE
Confidence 9999998754
No 157
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=71.57 E-value=30 Score=34.69 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=49.5
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CCC--------CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCC
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP~--------mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGad 186 (746)
.+.+.+++.+.+. ..+|+|+++. .|. ..|+++++++.+. .+++||+++-+- ..+.+.+++..|++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--~~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--SIDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 5677788776444 4789999876 542 2378999988643 245898888776 46788889999998
Q ss_pred eEE
Q 004541 187 DFL 189 (746)
Q Consensus 187 dyL 189 (746)
.+.
T Consensus 176 gva 178 (196)
T TIGR00693 176 GVA 178 (196)
T ss_pred EEE
Confidence 775
No 158
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.32 E-value=66 Score=32.28 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=61.8
Q ss_pred EEEEEec--ChhHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCccEEEEcc--CC----CCCHHHHHHHHHh
Q 004541 89 KVLLVEN--DDSTRHVVAALLRNCGYEVT----EATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMS 156 (746)
Q Consensus 89 rVLVVDD--d~~~r~~L~~lL~~~G~~V~----~A~dG~EALe~L~~~~~~~DLVLlDi--MP----~mdGlellr~IR~ 156 (746)
..+++-+ .+.....+...+++.|..+. .+.+..++++.+. ...|+|++.. .+ ...+.+.++++++
T Consensus 79 d~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKVKK 155 (202)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHHHh
Confidence 3444433 33334556666777787665 4558888887443 4678888753 22 2456778888864
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
. .++||++.-+- ..+.+.+++++|++.++.
T Consensus 156 ~---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 156 L---LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred h---cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 3 46788766555 578899999999997754
No 159
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=71.27 E-value=49 Score=35.75 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=47.0
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCe------EEeCCCCHHHHHHHHHHHHHHhc
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD------FLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGadd------yL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
++.+.+|++. -++|||..-+-.+.++..+++..||+. +|.+|.-..++..-|.+++.+..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 3666777643 359999999999999999999999885 57788777777777777777643
No 160
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.00 E-value=31 Score=39.12 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=55.8
Q ss_pred cEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHH--HHHHHHHhccCC
Q 004541 88 LKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKTR 160 (746)
Q Consensus 88 lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGl--ellr~IR~~~~~ 160 (746)
.+|.+|..|.. -.+.|..+-+.+|..+..+.+..+....+.+. ..+|+||+|. +...+-. +.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 57888887765 34666666677888888777766655555542 4689999997 6655543 4444443211 1
Q ss_pred CCccEEEEecCCCHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~ 178 (746)
+.-.+++|++....+.+.
T Consensus 246 ~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 246 PVQRLLLLNATSHGDTLN 263 (374)
T ss_pred CCeEEEEecCccChHHHH
Confidence 223478888776655533
No 161
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=70.70 E-value=40 Score=34.50 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=57.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHhc-CCCccEEEEcc--CCCCCHHH
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC--GY-------------EVTEATNGLQAWKILEDL-TNHIDLVLTEV--MPCLSGVA 149 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~--G~-------------~V~~A~dG~EALe~L~~~-~~~~DLVLlDi--MP~mdGle 149 (746)
-+..||.--+..++++.++|..| |+ .|..+.+.++|++.+.+. +.+|-+|.+|. -|..-.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 47889999999999999999876 32 267899999999998763 56788999998 57666676
Q ss_pred HHHHHHhccCCCCccEEEE--ecCCCHHHHHHHHhCCCCeEEeCCCCH
Q 004541 150 LLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVKPIRK 195 (746)
Q Consensus 150 llr~IR~~~~~~~iPVI~L--Ta~~~~~~~~~al~aGaddyL~KPi~~ 195 (746)
-++++... .+-|++++ |++.-.+ +.++ ..||+..||.-
T Consensus 123 ~lr~~l~~---~~~P~LllFGTGwGL~~---ev~~--~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEE---EDRPVLLLFGTGWGLAP---EVME--QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---H---HHHT--T-SEEB--TTT
T ss_pred HHHHHHhc---cCCeEEEEecCCCCCCH---HHHH--hcCeeEccccc
Confidence 66665422 23466555 6555443 4443 36799999854
No 162
>CHL00101 trpG anthranilate synthase component 2
Probab=70.65 E-value=9.7 Score=38.52 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=49.3
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc---CCCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi---MP~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.....-..|.++|+..|+.+..+......++.+.. ..||.||+-- -|..++ +...|.+. ....+||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg~~~~~~--~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPGHPRDSG--ISLDVISS-YAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCCChHHCc--chHHHHHH-hcCCCcEE
Confidence 8999999999999999999999999877755322333332 4588877632 222222 22333322 23568988
Q ss_pred EEec
Q 004541 167 MMSS 170 (746)
Q Consensus 167 ~LTa 170 (746)
-+.-
T Consensus 77 GICl 80 (190)
T CHL00101 77 GVCL 80 (190)
T ss_pred EEch
Confidence 7764
No 163
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.58 E-value=29 Score=35.77 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcCCCcc-EEEEcc-CCCC-CH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHID-LVLTEV-MPCL-SG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~D-LVLlDi-MP~m-dG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+.++.+.+ ..++ |+++|+ --++ .| ++++++|++. ..+|||+-.+-.+.+++.+++..|+++++.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44556666665 4566 777887 4322 23 6888888754 469999999999999999999999999874
No 164
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.52 E-value=64 Score=33.21 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=61.0
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC-------CCHHHHHHHHHhccC
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKT 159 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-------mdGlellr~IR~~~~ 159 (746)
..+++-+.. . ..+...++..+..+. .+.+.+++.++.+ ...|.|+++- -++ ...+++++++++.
T Consensus 82 d~v~l~~~~-~-~~~~~~~~~~~i~~i~~v~~~~~~~~~~~---~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-- 154 (236)
T cd04730 82 PVVSFSFGP-P-AEVVERLKAAGIKVIPTVTSVEEARKAEA---AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-- 154 (236)
T ss_pred CEEEEcCCC-C-HHHHHHHHHcCCEEEEeCCCHHHHHHHHH---cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH--
Confidence 444444442 2 334444555666665 3456666554443 3578888754 221 2457788888753
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
.++||++.-+-...+.+.+++..|++.++.-
T Consensus 155 -~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 -VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred -hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 3689999888888788999999999987654
No 165
>PRK07695 transcriptional regulator TenI; Provisional
Probab=70.49 E-value=1e+02 Score=31.26 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=55.9
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CCC-------CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCe
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 187 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-------mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGadd 187 (746)
.+.+.+++.+... ...|.|++.. .|. ..|++.++.++.. .++||+++-+- ..+.+.+++..|++.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSG 173 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCE
Confidence 5667777765543 4678888765 332 2367888888653 35999988777 778889999999987
Q ss_pred EE-----eCCCCHHHHHHHHHHHHH
Q 004541 188 FL-----VKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 188 yL-----~KPi~~~eL~~~L~~vlr 207 (746)
+. .+.-++.+....+.++++
T Consensus 174 vav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 174 IAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred EEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 62 233345444444444443
No 166
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=70.36 E-value=23 Score=35.89 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc--CCCC----CHHHHHHHHHhccCCCCccEEEEecCCC
Q 004541 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL----SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 102 ~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi--MP~m----dGlellr~IR~~~~~~~iPVI~LTa~~~ 173 (746)
.....|+..||.+.. +..+..-++.+.. -.||.|-+|. +... ....+++.|........+.| +.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQV-VAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeE-EEecCCC
Confidence 445667788998875 4556677788876 6799999997 3332 13455555543332334554 5678888
Q ss_pred HHHHHHHHhCCCC----eEEeCCCCH
Q 004541 174 MGLVFKCLSKGAV----DFLVKPIRK 195 (746)
Q Consensus 174 ~~~~~~al~aGad----dyL~KPi~~ 195 (746)
.+....+...|++ .|+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 8889999999986 357788754
No 167
>PRK10815 sensor protein PhoQ; Provisional
Probab=69.62 E-value=7.2 Score=45.13 Aligned_cols=58 Identities=10% Similarity=-0.074 Sum_probs=41.9
Q ss_pred CCCCchhhHHHHHHHHHhcC--------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG--------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~--------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|.. ...+.+.|... +....++|++++++.+||.+ .+.+.++.|++|++.+|.+
T Consensus 414 ~D~G~GI~-~e~~~~iF~~f~~~~~~~~G~GLGL~Ivk~iv~~~gG~i------~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 414 EDDGPGIP-ESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKI------SAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred EECCCCcC-HHHHHHHhCCcccCCCCCCCcchhHHHHHHHHHHcCCEE------EEEECCCCEEEEEEEEcCC
Confidence 47899886 44666666431 22345899999999887765 4467778899999999865
No 168
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=69.38 E-value=27 Score=35.12 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=58.6
Q ss_pred EEEEEecChhHHHHHHH----HHHhCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAA----LLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~----lL~~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||-|.+-...-.+.. +-+.... .|. .+.+.+|+.+.++. .+|+|++|-|.--+--++++.|+... +
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~~~~~~v~~l~~~~--~ 126 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPEDLKEAVEELRELN--P 126 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHHHHHHHHHHHHHHT--T
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHHHHHHHHHHHhhcC--C
Confidence 35665555443332333 3333332 233 78999999999984 69999999943333445555554433 3
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
. ..|.+++.-..+.+.+....|+|.|-
T Consensus 127 ~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 127 R-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp T-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred c-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3 67788888888889999999987553
No 169
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=69.33 E-value=54 Score=35.13 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHH
Q 004541 101 HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (746)
Q Consensus 101 ~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~ 177 (746)
..|++.|+.-.. -+........+.|++.. ..||.|++|+ =-.+|--++...|+.-.. ..++.|+=....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHH
Confidence 346666665322 22233344577788876 6799999998 444555556666654432 34555556666678899
Q ss_pred HHHHhCCCCeEEeCCCC-HHHHHHHHHH
Q 004541 178 FKCLSKGAVDFLVKPIR-KNELKNLWQH 204 (746)
Q Consensus 178 ~~al~aGaddyL~KPi~-~~eL~~~L~~ 204 (746)
.++++.|+++++.-=++ .++...+++.
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 99999999998876554 4555554443
No 170
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=69.22 E-value=42 Score=36.49 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCE--EE--EECCHHHHHHHHHhc--CCCccEEEEcc-CCCCC--HHHHHHHHH
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE--VT--EATNGLQAWKILEDL--TNHIDLVLTEV-MPCLS--GVALLSKIM 155 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~--V~--~A~dG~EALe~L~~~--~~~~DLVLlDi-MP~md--Glellr~IR 155 (746)
++..-++++||....+.+|.. +|.. ++ ...+..+.+..|... ...-=.++.|. ||.++ |+.|++..+
T Consensus 28 L~~~D~iaaEDTR~t~~LL~~----~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~ 103 (275)
T COG0313 28 LKEVDVIAAEDTRVTRKLLSH----LGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAR 103 (275)
T ss_pred HhhCCEEEEeccHHHHHHHHH----hCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHH
Confidence 345679999999887765544 4442 22 223444444433221 12233788999 99875 999999997
Q ss_pred hccCCCCccEEEEecCCCHHHHHHHHhCCC--CeEEeC---CCCHHHHHHHHHHHHH
Q 004541 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGA--VDFLVK---PIRKNELKNLWQHVWR 207 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~~~~~~al~aGa--ddyL~K---Pi~~~eL~~~L~~vlr 207 (746)
+. +|+|+.+-+... ........|+ +.|+.. |-...+-...|..+..
T Consensus 104 ~~----gi~V~~lPG~sA--~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~ 154 (275)
T COG0313 104 EA----GIRVVPLPGPSA--LITALSASGLPSQRFLFEGFLPRKSKERRKRLEALAN 154 (275)
T ss_pred Hc----CCcEEecCCccH--HHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHh
Confidence 54 589999988764 3333444453 234433 3344454555554443
No 171
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=68.98 E-value=6.1 Score=45.15 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=41.1
Q ss_pred CCCCchhhHHHHHHHHHhcC------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|... ..+.+.|... +......+++++++++||. |.++|.+|.|++|++.+|+.
T Consensus 539 ~D~G~G~~~-~~~~~~f~~~~~~~~~g~glGL~~~~~~~~~~~G~------i~~~s~~~~Gt~~~i~lp~~ 602 (607)
T PRK11360 539 EDNGCGIDP-ELLKKIFDPFFTTKAKGTGLGLALSQRIINAHGGD------IEVESEPGVGTTFTLYLPIN 602 (607)
T ss_pred EeCCCCCCH-HHHhhhcCCceeCCCCCCchhHHHHHHHHHHcCCE------EEEEEcCCCceEEEEEecCC
Confidence 478998752 2455555322 2334588999999988886 45677888999999999874
No 172
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=68.60 E-value=38 Score=37.99 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=64.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYE---------------VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~---------------V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGle 149 (746)
..++++||-+.+.-...+.++++..|+. |..+....+..+++.. -|++++=- +...-|.-
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~ 336 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHN 336 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCC
Confidence 4567888888776546677777777763 2333333455555543 57766643 32223555
Q ss_pred HHHHHHhccCCCCccEEEEecCCCHHHHHHHH-hCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 150 llr~IR~~~~~~~iPVI~LTa~~~~~~~~~al-~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+++.+. ..+|||+--.........+.+ ..| ++..|-+.++|.+.|..++.
T Consensus 337 ~lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~g---~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAA-----FGVPVISGPHTFNFKEIFERLLQAG---AAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHH-----hCCCEEECCCccCHHHHHHHHHHCC---CeEEECCHHHHHHHHHHHhc
Confidence 666652 457888532222233333333 343 66678899999999998875
No 173
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.46 E-value=46 Score=41.13 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred cEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCC--HHHHHHHHHhccCC
Q 004541 88 LKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS--GVALLSKIMSHKTR 160 (746)
Q Consensus 88 lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~md--Glellr~IR~~~~~ 160 (746)
.+|+||.-|.. ..+.+..+-+..|+.+..+.+..+..+.+... ..+|+||+|. +...+ -.+.+..|.. ...
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~-~~~ 293 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCG-VGR 293 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhc-cCC
Confidence 58888887754 23556666667788888788888877777653 5689999998 44333 2344444422 223
Q ss_pred CCccEEEEecCCCHHHHH---HHHhC----CCCeEEeC
Q 004541 161 KNLPVIMMSSLDSMGLVF---KCLSK----GAVDFLVK 191 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~---~al~a----GaddyL~K 191 (746)
+.-.+++|++....+.+. +.+.. +.+.+|.-
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 444577777766554433 33332 56665433
No 174
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=67.98 E-value=20 Score=38.93 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=62.2
Q ss_pred EEEEEecChhHH-------HHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 89 KVLLVENDDSTR-------HVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 89 rVLVVDDd~~~r-------~~L~~lL~~~-G~~V-~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
.|||-|++-... ..+..+=+.. ...| +.+.+.++|.+++. ..+|+|++|-|+-.+-.++++.|++.
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~---~GaDiI~lDn~~~e~l~~~v~~l~~~-- 232 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQ---ASPDILQLDKFTPQQLHHLHERLKFF-- 232 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---cCcCEEEECCCCHHHHHHHHHHHhcc--
Confidence 467766654433 3333333332 2233 47889999999997 46999999986555555666666432
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
.+++ +|..++.-..+.+.+....|+|-+
T Consensus 233 ~~~~-~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 233 DHIP-TLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CCCE-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 2333 677888889999999999998754
No 175
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=67.94 E-value=62 Score=34.97 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=62.1
Q ss_pred HHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHH
Q 004541 102 VVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 102 ~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~ 178 (746)
.|++.|+.-.. -+......-.+.|++.. ..||.|++|+ =-.++--++...|+.-.. ..++.|+=....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHH
Confidence 35556654322 22233344567777776 5699999998 444455555555554432 334445555666778899
Q ss_pred HHHhCCCCeEEeCCCCH-HHHHHHHH
Q 004541 179 KCLSKGAVDFLVKPIRK-NELKNLWQ 203 (746)
Q Consensus 179 ~al~aGaddyL~KPi~~-~eL~~~L~ 203 (746)
++|++||.+++.-=|+- ++...+++
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 99999999999887764 44444443
No 176
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.91 E-value=66 Score=37.13 Aligned_cols=108 Identities=10% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCccEEEEcc--CCCCCHHHHHHHHHhc
Q 004541 85 LRSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV--MPCLSGVALLSKIMSH 157 (746)
Q Consensus 85 ~~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~--~~~DLVLlDi--MP~mdGlellr~IR~~ 157 (746)
..+.+|++|+-|.. ..+.+..+-+..|+.+..+.+..+..+.+.... ..+|+||+|. -...+. +.++.|++.
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~-~lm~EL~~~ 345 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIET 345 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCH-HHHHHHHHH
Confidence 34678999998765 334455555567888887877776655554321 2589999998 222222 223333221
Q ss_pred --cCCCCccEEEEecCCCHHH----HHHHHhCCCCeEEeCCC
Q 004541 158 --KTRKNLPVIMMSSLDSMGL----VFKCLSKGAVDFLVKPI 193 (746)
Q Consensus 158 --~~~~~iPVI~LTa~~~~~~----~~~al~aGaddyL~KPi 193 (746)
...++-.+++|++.....+ +..+-..+++.+|.-=+
T Consensus 346 lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKL 387 (436)
T PRK11889 346 MGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKF 387 (436)
T ss_pred HhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcc
Confidence 1123334566766433322 22333457777654433
No 177
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=67.82 E-value=6.9 Score=47.90 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred CCCCchhhHHHHHHHHH---hcCCC-------CCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADKRLQELNHCL---QAGSK-------RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l---~~~~~-------~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
-|.|||+- ..++..+| -...+ ...++||+.+++.|||.|.. ....+.|++|++.+|....
T Consensus 813 ~DeGpGIP-~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a------~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 813 IDEGPGIP-EGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISA------ENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred EeCCCCCC-hhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEE------EEcCCCceEEEEEeecCCC
Confidence 47899886 33556555 23222 22389999999998887765 4567889999999987643
No 178
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.67 E-value=45 Score=36.39 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=62.7
Q ss_pred EEEEEecChhHH--------HHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhc
Q 004541 89 KVLLVENDDSTR--------HVVAALLRNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (746)
Q Consensus 89 rVLVVDDd~~~r--------~~L~~lL~~~G~--~V-~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~ 157 (746)
.|||-|.+-... ..+..+=+..++ .| +.+.+.+|+.+.+. ..+|+|++|-|+-.+--+++..|+.
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~---~gaDiImLDn~s~e~l~~av~~~~~- 236 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA---AGVDTIMLDNFSLDDLREGVELVDG- 236 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh---cCCCEEEECCCCHHHHHHHHHHhCC-
Confidence 588877776542 333333334453 34 47999999999986 4789999998654444455555531
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
..+|-.++.-..+.+.+....|+|-+
T Consensus 237 -----~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 237 -----RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -----CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 23788899999999999999998743
No 179
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=67.35 E-value=61 Score=35.07 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE------EeCCCCHHHHHHHHHHHHHHh
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy------L~KPi~~~eL~~~L~~vlrr~ 209 (746)
++++++|++. -++|||...+-.+.+++.+++.+||+.+ |..|.-+..+..-+.+++.+.
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 6778888654 2699999999999999999999998643 445777777777777777654
No 180
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=67.21 E-value=8.3 Score=43.29 Aligned_cols=59 Identities=8% Similarity=-0.106 Sum_probs=42.4
Q ss_pred CCCCchhhHHHHHHHHHhcC------------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQAG------------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|+|.. ...+.++|... +....++|++++++.+||. +.+.+..+.|++|++.+|+..
T Consensus 390 ~D~G~Gi~-~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~------l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 390 ADSAPGVS-DEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGR------IIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred EecCCCcC-HHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCE------EEEEECCCCeEEEEEEccCCC
Confidence 47899886 44666666332 1233488999999998764 556677788999999998754
No 181
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=66.86 E-value=48 Score=33.73 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=54.2
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-------HHHHHHHHhccCCCCc-cEEEEec
Q 004541 103 VAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNL-PVIMMSS 170 (746)
Q Consensus 103 L~~lL~~~G~~V~~-A--~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-------lellr~IR~~~~~~~i-PVI~LTa 170 (746)
....++..|+.+.. + .+..+.++.+.. ..|.|+++. -|+.+| ++.+++++.......+ ++|++.+
T Consensus 101 ~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T PRK05581 101 LLQLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG 177 (220)
T ss_pred HHHHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 34445556766543 3 244555555532 367788876 565544 3445555432211123 4565666
Q ss_pred CCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHH
Q 004541 171 LDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQH 204 (746)
Q Consensus 171 ~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~ 204 (746)
--..+.+.++.+.|++.++. +.-++.+....+++
T Consensus 178 GI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 178 GINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred CCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 66667888898899996644 43344444444433
No 182
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=66.60 E-value=19 Score=37.20 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=44.1
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCccEEEEcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV 141 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~--~V~-~A~dG~EALe~L~~~~--~~~DLVLlDi 141 (746)
-+|.-||-++......+.+++..|+ +|. ...++.+.|..+.... ..||+||+|.
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 4899999999999999999999887 455 5688888888776522 3799999999
No 183
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.50 E-value=73 Score=36.53 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred CccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCccEEEEcc--CCCCCH--HHHHHHHHh
Q 004541 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV--MPCLSG--VALLSKIMS 156 (746)
Q Consensus 86 ~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~--~~~DLVLlDi--MP~mdG--lellr~IR~ 156 (746)
.+.+|.+|+-|+. ..+.+..+-+..++.+..+.+..+..+.+.... ..+|+||+|. ....+. ++-+..+..
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 4578999998764 244566666667887777778777655554321 4689999998 322232 233333322
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHH----hCCCCeEEeCCCC-HHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVKPIR-KNELKNLWQHVW 206 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al----~aGaddyL~KPi~-~~eL~~~L~~vl 206 (746)
. ..++..++++++.....+....+ ..+.+.+|.-=++ -..+-.+|.-+.
T Consensus 313 ~-~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 313 V-VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred c-cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCCccHHHHHHH
Confidence 1 12344455666655544444432 3556665433333 333444444433
No 184
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=66.40 E-value=24 Score=37.92 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
.|-+.=-++.....+..+|...-|.+..+.++++.++.+++....+|.+|+.. +..-..++..|.+.. --+|+|++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~--~~~~~~~~~~L~e~g--~LLPaVil 77 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQ--SPLLPPLFNQLYEQG--ILLPAVIL 77 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEET--TSTTHHHHHHHHHCT------EEEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEec--CCCcHHHHHHHHHcC--ccccEEEE
Confidence 35555567788899999999888999999999999999998778999999987 223456788886553 56899998
Q ss_pred ecCCCHHHHHHHHhCCC-----CeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 169 SSLDSMGLVFKCLSKGA-----VDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGa-----ddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
....+.... -..|- ...-.+.-..++|-..|.+++.++
T Consensus 78 ~~~~s~~~~---~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 78 GSSESASTT---SESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp S---S--TT---S--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred ecCcccccC---CCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 663221100 01222 223334445566666666555553
No 185
>PRK10490 sensor protein KdpD; Provisional
Probab=66.13 E-value=8.1 Score=48.38 Aligned_cols=59 Identities=7% Similarity=-0.074 Sum_probs=41.5
Q ss_pred CCCCchhhHHHHHHHHHhcC----------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQAG----------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~----------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|+|+. ...+.++|... +....++|++++++.+||.+.+ .|.+|.|++|++.+|+..
T Consensus 816 ~D~G~GI~-~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive~hGG~I~v------~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 816 WDNGPGIP-PGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWA------ENRPEGGACFRVTLPLET 884 (895)
T ss_pred EECCCCCC-HHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHHHcCCEEEE------EECCCCeEEEEEEeECCC
Confidence 47899886 33556665321 1123489999999988776544 667788999999999754
No 186
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=65.93 E-value=48 Score=38.15 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=69.7
Q ss_pred CccEEEEEec---ChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCC
Q 004541 86 RSLKVLLVEN---DDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 86 ~~lrVLVVDD---d~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~ 160 (746)
..++++||-+ ++.....+..+++.+|. .|.... ..+..+++. ..|++++-...+.-|+.+++.+.
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~~Eg~p~~vlEAma----- 392 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSISEGQPLVILEAMA----- 392 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCchhhcCChHHHHHHH-----
Confidence 3567778754 34556667777777765 344433 444555554 36777775533334677888773
Q ss_pred CCccEEEEecCCCHHHHHHHHhC------CCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSK------GAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~a------GaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+ |.... ..+.+.. |..+++..|-++++|.++|.+++.
T Consensus 393 ~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 393 AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 4578876 43332 2333433 678999999999999999999875
No 187
>PRK05670 anthranilate synthase component II; Provisional
Probab=65.84 E-value=17 Score=36.69 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=53.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
|||||-....-..+.++|++.|+++..........+.+.. ..||.||+=- +--.+--.+.+.|+.. ...+||+-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~--~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVLSPGPGTPAEAGISLELIREF--AGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCEEE
Confidence 8999999999999999999999988866543222223333 3488777721 2111111233344322 35689988
Q ss_pred EecCCCHHHHHHHHhCCCC
Q 004541 168 MSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGad 186 (746)
+.- +...-+...|+.
T Consensus 78 ICl----G~Qlla~alGg~ 92 (189)
T PRK05670 78 VCL----GHQAIGEAFGGK 92 (189)
T ss_pred ECH----HHHHHHHHhCCE
Confidence 764 333444455654
No 188
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.39 E-value=20 Score=38.41 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCCCCccEEEEecC------CCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSL------DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~------~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
.++++++||+. ..++|+|+||-+ .-.....+|.++|++++|.-.+.+++....+..+
T Consensus 76 ~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 46677777633 467899999854 3345688899999999999888887777666554
No 189
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=65.04 E-value=45 Score=36.27 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=65.6
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~--V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.++++||.+.+. +..+..+++..+.. |.......+..+++.. .|++|+=...+--|.-+++.+. ..+|
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~~Eg~~~~~lEAma-----~G~P 298 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSLAEGISNTILEAMA-----SGLP 298 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccccccCchHHHHHHH-----cCCC
Confidence 456777766543 35566666666543 3333333444555543 4665542222334667777773 4588
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
||+ |... ...+.+..|..+++..|-+.++|...|..++.
T Consensus 299 vv~-s~~~---g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 299 VIA-TAVG---GNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EEE-cCCC---CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 876 4332 23445667778999999999999999998764
No 190
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=64.73 E-value=35 Score=37.92 Aligned_cols=115 Identities=10% Similarity=0.149 Sum_probs=76.7
Q ss_pred cEEEEEecChhHHHHHHHHHH------hCCCEE--EEECCHHHHHHHHHhcCCCccEEEEcc-CC-----CCCHHHHHHH
Q 004541 88 LKVLLVENDDSTRHVVAALLR------NCGYEV--TEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~------~~G~~V--~~A~dG~EALe~L~~~~~~~DLVLlDi-MP-----~mdGlellr~ 153 (746)
+|+=|+-|+.....-+...++ +.||.| +++.|...|-++..- .+ +.++=+ -| +..-.+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 566666666555443333332 349988 366777777666553 34 334332 22 2334577788
Q ss_pred HHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHh
Q 004541 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 154 IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~ 209 (746)
+++. ..+|||+=.+-...+++..+++.|+++.|. |--++-.+..+++..+.--
T Consensus 244 ~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aG 301 (326)
T PRK11840 244 IVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAG 301 (326)
T ss_pred HHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHH
Confidence 8655 569999999999999999999999999874 5567777777777766543
No 191
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.68 E-value=81 Score=33.27 Aligned_cols=89 Identities=16% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCccEEEEcc-CCCCC------HHHHHHHHHhccCCCCccEEEE
Q 004541 99 TRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV-MPCLS------GVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~A~dG---~EALe~L~~~~~~~DLVLlDi-MP~md------Glellr~IR~~~~~~~iPVI~L 168 (746)
-...+...+++.|.++..+-+. .+.++.+.. ....++++ . +|+.. -.+.+++||+.. .+.||++=
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~ 191 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEe
Confidence 3455677778889887744333 455555544 34556777 5 77632 245666676543 34676654
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~KP 192 (746)
.+-...+.+.+++.+|||.++.--
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECH
Confidence 555477888888999999998764
No 192
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.68 E-value=77 Score=37.02 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=64.2
Q ss_pred CccEEEEEecC----hhHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCccEEEEccCCC------------CC
Q 004541 86 RSLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (746)
Q Consensus 86 ~~lrVLVVDDd----~~~r~~L~~lL~~~-G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~------------md 146 (746)
.++.||+||.. ......+..+-..+ +..|+ .+.+.++|..++.. ..|+|.+-+-|+ ..
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIGPGSICTTRIVAGVGVP 315 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCCCCccccceeecCCCcC
Confidence 46778888864 22334444444444 44444 56788888888763 577775422111 12
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
-++++..+++......+|||+=.+.....++.+|+.+||+.++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 24455444432223468999888999999999999999998763
No 193
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.52 E-value=77 Score=37.24 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=56.5
Q ss_pred ccEEEEEec----ChhHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCccEEEEc--------------c-CCC
Q 004541 87 SLKVLLVEN----DDSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTE--------------V-MPC 144 (746)
Q Consensus 87 ~lrVLVVDD----d~~~r~~L~~lL~~~-G~~V~~--A~dG~EALe~L~~~~~~~DLVLlD--------------i-MP~ 144 (746)
+..+++||- .....+.++.+-+.+ +..|.. +.+.++|..++. ...|.|.+. + .|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~---aGad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID---AGADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH---cCCCEEEECCcCCcccccchhccCCCCh
Confidence 456666663 333334444444443 334443 556666666554 346666543 2 333
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+. .+..+++......+|||+=-+.....++.+|+.+||+.++.=
T Consensus 330 ~~---ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 330 AS---AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HH---HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 32 322232221124589888778888999999999999987743
No 194
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=64.27 E-value=55 Score=35.26 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCccEEEEEecChh---HHHHHHHHHHhCCCEEEEECC---H-H---HHHHHHHhcCCCccEEEEccCCC--CCH--HHH
Q 004541 85 LRSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATN---G-L---QAWKILEDLTNHIDLVLTEVMPC--LSG--VAL 150 (746)
Q Consensus 85 ~~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~d---G-~---EALe~L~~~~~~~DLVLlDiMP~--mdG--lel 150 (746)
..+.+|+|||-|.. ..+.+..+.+..|..+..... . . ++++.+.. ..+|+||+|.-+. .+. ++-
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~G~~~~d~~~~~e 175 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTAGRLQNKVNLMDE 175 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCCCCCcchHHHHHH
Confidence 34679999997753 235566666777876654332 2 2 33444443 6799999998222 222 222
Q ss_pred HHHHHhc-----cCCCCccEEEEecCCCHHHHHHH---H-hCCCCeEE
Q 004541 151 LSKIMSH-----KTRKNLPVIMMSSLDSMGLVFKC---L-SKGAVDFL 189 (746)
Q Consensus 151 lr~IR~~-----~~~~~iPVI~LTa~~~~~~~~~a---l-~aGaddyL 189 (746)
++.|... ...++-.++++.+....+....+ . ..+.+.++
T Consensus 176 l~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 176 LKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred HHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEE
Confidence 3333211 11245557778776655443332 2 24566543
No 195
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.10 E-value=32 Score=37.62 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEEEEecChhHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCC
Q 004541 89 KVLLVENDDSTR----HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 89 rVLVVDDd~~~r----~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~ 162 (746)
.|||=|.+-... ..+..+=+.... -.+.+.+.+||.+.+. ...|+|++|-|+--+--++++.|+.. .++
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~---~gaDiI~LDnm~~e~vk~av~~~~~~--~~~ 246 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA---EGAELVLLDNFPVWQTQEAVQRRDAR--APT 246 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHhcc--CCC
Confidence 366666554333 233333333332 3447899999999986 46899999986532333444444332 233
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
+ +|..|+.-..+.+.+....|+|-+
T Consensus 247 v-~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 247 V-LLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred E-EEEEECCCCHHHHHHHHhcCCCEE
Confidence 3 677888888999999999998754
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.82 E-value=76 Score=36.16 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=68.2
Q ss_pred CccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHH---HHHHHHhc
Q 004541 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVA---LLSKIMSH 157 (746)
Q Consensus 86 ~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGle---llr~IR~~ 157 (746)
.+.+|+||.-|.. ....|..+.+..|+.+..+.+..+..+.+... ..+|+||+|. ....+-.. +.+.|...
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 4578999998764 22335555555688888888877776666653 6799999997 33334432 22233221
Q ss_pred cCCCCccEEEEecCCCHHHHHHHH----hCCCCeE-EeCCCCHHHHHHHHHHHHH
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCL----SKGAVDF-LVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al----~aGaddy-L~KPi~~~eL~~~L~~vlr 207 (746)
. .+.-.+++|++......+.+.+ ..|.+.+ |+|=-.-..+-.+|.-+.+
T Consensus 284 ~-~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~ 337 (388)
T PRK12723 284 G-RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYE 337 (388)
T ss_pred C-CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHHHH
Confidence 1 1223578888877665554433 3456665 4443333334444444333
No 197
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=63.73 E-value=41 Score=36.52 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=66.8
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCccEEEEc-c--C-C------CCC-----
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-----EATNGLQAWKILEDLTNHIDLVLTE-V--M-P------CLS----- 146 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-----~A~dG~EALe~L~~~~~~~DLVLlD-i--M-P------~md----- 146 (746)
+-|||=+|-|+.-+..-..+-+++|..+. .-.-.+...++|.+ .+||||++= . + - +++
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 181 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE--VRPDILVITGHDAYSKNKGNYMDLNAYRHS 181 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH--hCCCEEEEeCchhhhcCCCChhhhhhhhhh
Confidence 45899999999999999999888876655 33456667778887 889987752 2 2 1 112
Q ss_pred --HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCC
Q 004541 147 --GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193 (746)
Q Consensus 147 --Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi 193 (746)
-++.++..|......+- +|++.+..+ ...+..+++||+ |-.-|-
T Consensus 182 kyFVeaVk~aR~y~~~~D~-LVIFAGACQ-S~yEall~AGAN-FASSP~ 227 (283)
T TIGR02855 182 KYFVETVREARKYVPSLDQ-LVIFAGACQ-SHFESLIRAGAN-FASSPS 227 (283)
T ss_pred HHHHHHHHHHHhcCCCccc-EEEEcchhH-HHHHHHHHcCcc-ccCCcc
Confidence 23555666554433333 344455443 566788899987 666663
No 198
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=63.36 E-value=22 Score=36.83 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc---CCCCCHH--HHHHHHHhccCCCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGV--ALLSKIMSHKTRKN 162 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi---MP~mdGl--ellr~IR~~~~~~~ 162 (746)
+||||||..+.....+..+|+..|+++..+......+..+......||.||+=- .|..++. ++++++. ..+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~----~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA----AAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH----hCC
Confidence 489999999888888999999999988865543221211211013588777632 2333332 2444432 246
Q ss_pred ccEEEEec
Q 004541 163 LPVIMMSS 170 (746)
Q Consensus 163 iPVI~LTa 170 (746)
+||+-+.-
T Consensus 77 ~PiLGIC~ 84 (214)
T PRK07765 77 TPLLGVCL 84 (214)
T ss_pred CCEEEEcc
Confidence 89988765
No 199
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=63.35 E-value=35 Score=37.17 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=66.3
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCccEEEEc-c--C-CC------CC-----
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT--EA---TNGLQAWKILEDLTNHIDLVLTE-V--M-PC------LS----- 146 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~--~A---~dG~EALe~L~~~~~~~DLVLlD-i--M-P~------md----- 146 (746)
+-|||=+|-|+.-+..-..+-+++|..+. .+ .-.+...++|.+ .+||||++= . + -+ ++
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 182 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--YRPDILVITGHDGYLKNKKDYSDLNNYRNS 182 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--cCCCEEEEeCchhhhcCCCChhhhhhhhcc
Confidence 34899999999999999999999887665 22 344456677777 789987752 2 2 11 11
Q ss_pred --HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCC
Q 004541 147 --GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193 (746)
Q Consensus 147 --Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi 193 (746)
-++.++.+|.-....+--|| +.+..+ ...+..+++||+ |-.-|-
T Consensus 183 kyFVeaV~~aR~~ep~~D~LVI-fAGACQ-S~fEall~AGAN-FASSP~ 228 (287)
T PF05582_consen 183 KYFVEAVKEARKYEPNLDDLVI-FAGACQ-SHFEALLEAGAN-FASSPK 228 (287)
T ss_pred HHHHHHHHHHHhcCCCcccEEE-EcchhH-HHHHHHHHcCcc-ccCCcc
Confidence 23566666655444444344 444443 466788899987 666663
No 200
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=63.19 E-value=74 Score=33.94 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCC-
Q 004541 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR- 194 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~- 194 (746)
......+.|++.. ..||.|++|+ =-.++--++...|+.-.. ..++.|+=....+...+.++++.|+++++.-=|+
T Consensus 19 ~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~t 95 (249)
T TIGR03239 19 ALGNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVES 95 (249)
T ss_pred cCCCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCC
Confidence 3444577788876 6799999998 444555556666654432 3455555666677889999999999998877664
Q ss_pred HHHHHHHHH
Q 004541 195 KNELKNLWQ 203 (746)
Q Consensus 195 ~~eL~~~L~ 203 (746)
.++..++++
T Consensus 96 aeea~~~v~ 104 (249)
T TIGR03239 96 AEEAERAVA 104 (249)
T ss_pred HHHHHHHHH
Confidence 455554444
No 201
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=62.80 E-value=20 Score=39.43 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=50.4
Q ss_pred EEEEEecChhHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHH
Q 004541 89 KVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~--G~---~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr 152 (746)
.|+++|-|..+.+.=..+|..+ || +|. ...||...++.+.+ +.+|+||+|. =|.+.+..+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHHH
Confidence 6899999999999988888865 55 444 56699999999876 8999999999 88888876544
No 202
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=62.79 E-value=53 Score=34.85 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=77.9
Q ss_pred ccEEEEEecCh----hHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc-C-CC----CCHHHHHHHH
Q 004541 87 SLKVLLVENDD----STRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PC----LSGVALLSKI 154 (746)
Q Consensus 87 ~lrVLVVDDd~----~~r~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi-M-P~----mdGlellr~I 154 (746)
.+.+-|.|... .....+...|+..|+.+. -+.+|-..+..|.+ .+||+|=+|- + -+ .....+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 45555555443 134445666778898876 58899999999998 8899999996 3 32 2334566666
Q ss_pred HhccCCCCccEEEEecCCCHHHHHHHHhCCCC----eEEeCCCCHHHHHHHHHH
Q 004541 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV----DFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 155 R~~~~~~~iPVI~LTa~~~~~~~~~al~aGad----dyL~KPi~~~eL~~~L~~ 204 (746)
-.....-.+.|| .-+-...+....+.+.|++ .|+.||+..+++...+..
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 443333455554 4555667778888899987 368899999777766543
No 203
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=62.76 E-value=94 Score=36.68 Aligned_cols=98 Identities=16% Similarity=0.285 Sum_probs=65.7
Q ss_pred ccEEEEEecCh----hHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCccEEEEc--------------c-CCC
Q 004541 87 SLKVLLVENDD----STRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTE--------------V-MPC 144 (746)
Q Consensus 87 ~lrVLVVDDd~----~~r~~L~~lL~~~-G~~V~--~A~dG~EALe~L~~~~~~~DLVLlD--------------i-MP~ 144 (746)
+.-|++||--. ...+.++.+=+.+ +..|+ -+.+.++|..+++ ..+|.|.+- . .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCCCc
Confidence 56778887432 1123344433344 45555 3778888888876 468888652 2 244
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
..-+..+..+.+. ..+|||+-.+.....++.+|+.+||+.++.
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4455566666532 368999999999999999999999998773
No 204
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.68 E-value=69 Score=34.66 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=55.3
Q ss_pred ccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHH---HHHHHhcCCCccEEEEcc--CCCCCH--HHHHHHHHh
Q 004541 87 SLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQA---WKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EA---Le~L~~~~~~~DLVLlDi--MP~mdG--lellr~IR~ 156 (746)
+.+|.+|+-|.. ....++.+.+..++.+..+.+..+. ++.+.. ...+|+||+|. -...+. ++-+..+..
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh-cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 467888887654 3445556666678988877776544 333432 24699999998 222222 222222221
Q ss_pred ccCCCCccEEEEecCCCHHH----HHHHHhCCCCeEEe
Q 004541 157 HKTRKNLPVIMMSSLDSMGL----VFKCLSKGAVDFLV 190 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~----~~~al~aGaddyL~ 190 (746)
. ..++..+++|++.....+ +..+...+++.++.
T Consensus 182 ~-~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 182 Q-VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred h-hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 1 123334666776544322 23334456666543
No 205
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=62.68 E-value=16 Score=36.96 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=53.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCccEEEEcc--C-CCCCHHHHHHHHHhccCCCCccE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNG-LQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG-~EALe~L~~~~~~~DLVLlDi--M-P~mdGlellr~IR~~~~~~~iPV 165 (746)
|||||.....-..+..+|+..|+.+..+... .+ ++.+.. ..||.||+-- | |.-++. ..+.|+. ....+||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~--~~~~~iilsgGp~~~~~~~~-~~~~i~~--~~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEID-IDGIEA--LNPTHLVISPGPCTPNEAGI-SLQAIEH--FAGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCC-HHHHhh--CCCCEEEEeCCCCChHHCcc-hHHHHHH--hcCCCCE
Confidence 8999999999999999999999988866533 22 222333 4577766643 3 222322 2233432 1356899
Q ss_pred EEEecCCCHHHHHHHHhCCC
Q 004541 166 IMMSSLDSMGLVFKCLSKGA 185 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGa 185 (746)
+-+.- +...-+...|+
T Consensus 76 LGICl----G~Qlia~a~Gg 91 (193)
T PRK08857 76 LGVCL----GHQAIAQVFGG 91 (193)
T ss_pred EEEcH----HHHHHHHHhCC
Confidence 88764 33344555554
No 206
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=62.59 E-value=68 Score=34.22 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=73.9
Q ss_pred cEEEEEecChhHH------HHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-----HHHHHH
Q 004541 88 LKVLLVENDDSTR------HVVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~r------~~L~~lL~~~G~~V~~A--~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-----lellr~ 153 (746)
+|+=|+-|+...+ ....++|-+.||.|... .|.--| +.|++ ... ..||-+ -|-.+| ...++.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~a-rrLee--~Gc-aavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLA-RRLEE--AGC-AAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHH-HHHHh--cCc-eEeccccccccCCcCcCCHHHHHH
Confidence 5676776654332 23345666789999843 344333 34444 222 456666 665554 356777
Q ss_pred HHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 004541 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK-----PIRKNELKNLWQHVWR 207 (746)
Q Consensus 154 IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K-----Pi~~~eL~~~L~~vlr 207 (746)
|+++ .++|||+=.+-..+.+...+++.|+|.+|.- --++-.+..+....+.
T Consensus 177 iie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 177 IIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 7654 3899999999999999999999999999864 3355555555555444
No 207
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=62.46 E-value=35 Score=38.98 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=64.2
Q ss_pred ccEEEEEec-ChhHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCccEEEEcc--CCCCCHH--HHHHHHHhccC
Q 004541 87 SLKVLLVEN-DDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKT 159 (746)
Q Consensus 87 ~lrVLVVDD-d~~~r~~L~~lL~~~G~~V~~A~--dG~EALe~L~~~~~~~DLVLlDi--MP~mdGl--ellr~IR~~~~ 159 (746)
+=+||+.+| ---.+..+..+|+++|++|..+. +..+.++.+.. ...++|+++. -|-|.-. ..+.+|- +.
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A-~~- 177 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLA-KA- 177 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHH-Hh-
Confidence 457888887 55678889999999999999766 45556666653 4789999997 5655433 3333331 11
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.. .++++=.--......+.+..|||=++
T Consensus 178 -~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 178 -YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred -cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 12 45555544445577888999987554
No 208
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.40 E-value=35 Score=37.30 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=58.6
Q ss_pred EEEEEecChhHHHHHHH----HHHhCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAA----LLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~----lL~~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||-|.+-...-.+.. +=+..++ .|. .+.+.+||.+.+. ..+|+|++|-|.-.+=-++++.|++. .+
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~---~GaD~I~LDn~~~e~l~~av~~~~~~--~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE---YGADIIMLDNMPVDLMQQAVQLIRQQ--NP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHhc--CC
Confidence 47776666444322333 3333453 344 6899999999986 47899999984322222334444322 35
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
++|| ..++--..+.+.+....|+|.+-
T Consensus 243 ~i~l-eAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 243 RVKI-EASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred CeEE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 5654 45656678888899999988553
No 209
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.35 E-value=95 Score=32.40 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=58.7
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcC-CCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHH
Q 004541 104 AALLRNCGY-EVTEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (746)
Q Consensus 104 ~~lL~~~G~-~V~~A~dG~EALe~L~~~~-~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~a 180 (746)
...|...+. -|+...+.++|+++++... ..++ ++.+ |-.-.+++.++.||+. ++++- |..-.-...+....+
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~--~p~~~-IGAGTVl~~~~a~~a 83 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE--VPEAL-IGAGTVLNPEQLAQA 83 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH--CCCCE-EEEeeccCHHHHHHH
Confidence 344555554 4446677888877776531 2344 3444 5444789999999754 35543 333334455778899
Q ss_pred HhCCCCeEEeCCCCHHHHHHHHHH
Q 004541 181 LSKGAVDFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 181 l~aGaddyL~KPi~~~eL~~~L~~ 204 (746)
+++||+ |++-|.--.++.+..++
T Consensus 84 ~~aGA~-FivsP~~~~~vi~~a~~ 106 (212)
T PRK05718 84 IEAGAQ-FIVSPGLTPPLLKAAQE 106 (212)
T ss_pred HHcCCC-EEECCCCCHHHHHHHHH
Confidence 999977 77777766666555443
No 210
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=62.33 E-value=90 Score=29.72 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=71.1
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCC
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATN--GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~d--G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~ 160 (746)
...++++|+.+.+.. ..+..+.+..++ .+..... ..+..+++.. .|++|+=..-+--|..+++.+.
T Consensus 45 ~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~e~~~~~~~Ea~~----- 114 (172)
T PF00534_consen 45 NPNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRNEGFGLSLLEAMA----- 114 (172)
T ss_dssp HTTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSSBSS-HHHHHHHH-----
T ss_pred CCCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccccccccccccccc-----
Confidence 345788888844443 345555555554 3444333 3466777765 6778776522445677777773
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
..+|||+ +.. ....+.+..+..+++..|.+..+|...|.+++...
T Consensus 115 ~g~pvI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 115 CGCPVIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp TT-EEEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cccceee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 4567764 432 23457777888999999999999999999988763
No 211
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.27 E-value=36 Score=35.81 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhcCCCccEEEEcc-CCCC-CH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEV-MPCL-SG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDi-MP~m-dG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+.++.+...+ --.+|++|+ .-++ .| +++++.|++. ..+|||+-.+-.+.+++.++++.|++..+.
T Consensus 149 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 149 NLFSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CHHHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3466666666521 236899999 6553 44 6778888653 468999999999999999999999998875
No 212
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=62.25 E-value=93 Score=31.90 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=65.0
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~i 163 (746)
.++++|+.+.+. ...+..++...+. .|......++..+++.. .|++|.-. . +--|..+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH-----cCC
Confidence 456666665443 3344445555543 33333333555555543 57777765 4 233667777773 468
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
|||+....... ......+..+++.++.+.++|...|.+++.
T Consensus 278 Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 278 PVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 88754322222 234455668899999999999999999865
No 213
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=61.76 E-value=1.5e+02 Score=33.05 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=62.4
Q ss_pred ccEEEEEecCh--------hHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHH
Q 004541 87 SLKVLLVENDD--------STRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (746)
Q Consensus 87 ~lrVLVVDDd~--------~~r~~L~~lL~~~G~~V~~A~--dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR 155 (746)
.++++||.+.+ .....+..+...++-.|.... +.++..+++.. .|++++=. ..+.-|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 45666665432 122334444444454444332 34555566653 46666543 33333556666662
Q ss_pred hccCCCCccEEEEecCCCHHHHHHHHhCCCCeE-EeCCCCHHHHHHHHHHHHH
Q 004541 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF-LVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy-L~KPi~~~eL~~~L~~vlr 207 (746)
..+|||... ... ..+.+..|..+| +..|.+.++|.+.|.+++.
T Consensus 300 -----~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 -----AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred -----cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 458887643 322 334556677888 5689999999999998875
No 214
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=61.70 E-value=9.6 Score=34.19 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=39.2
Q ss_pred CCCCchhhHHHHHHHHHhcC-----------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeec
Q 004541 2 NVDGKADKRLQELNHCLQAG-----------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~-----------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl 65 (746)
.|+|+|.. ...|.+++... +......+++.++++++|. +.+.+..+.|++|++.+|+
T Consensus 43 ~d~G~gi~-~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~------l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 43 SDNGVGIP-PEELEKLFEPFFTSDKSETSISGHGLGLYIVKQIAERHGGE------LTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp EESSSSTT-HHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHHHHHHHTTEE------EEEEEETTTEEEEEEEEEG
T ss_pred Eecccccc-ccccccchhhcccccccccccCCCChHHHHHHHHHHHCCCE------EEEEEcCCCcEEEEEEEEC
Confidence 46788876 34666666311 1112278899999987776 4556777899999999886
No 215
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=61.55 E-value=1.1e+02 Score=31.76 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=43.8
Q ss_pred ccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 134 ~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
.|++|+=. ..+.-|+.+++.+. ..+|||+ |... ...+.+..+..+++.+|-+.++|..+|..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA-----AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH-----CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 35555433 23344666777773 4578875 3322 23455667778999999999999999999886
No 216
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.52 E-value=44 Score=39.33 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhcCCCccEEEEccCCCC--CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEVMPCL--SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDiMP~m--dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+-++.|.+ ...|+|++|.-.+. .-++++++||+. +++++||+ ..-...+....++++|||.+..
T Consensus 248 ~~~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~--~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKT--YPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHh--CCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 33444444444 57999999993333 335899999764 46666653 3445677888999999997754
No 217
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=61.41 E-value=96 Score=33.00 Aligned_cols=87 Identities=14% Similarity=0.049 Sum_probs=58.5
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe-CCC
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPI 193 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~-KPi 193 (746)
....-...++.+.. ..||.|++|+ =-.++--++...|+...... +.+|+=....+...+.++++.|+++++. |--
T Consensus 18 ~~~~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g-~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~ 94 (249)
T TIGR02311 18 LGLADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAPYP-SSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIE 94 (249)
T ss_pred EeCCCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHhcC-CCcEEECCCCCHHHHHHHhCCCCCEEEecCcC
Confidence 33444567777776 6799999998 33367777777776543222 3445555555667899999999998755 455
Q ss_pred CHHHHHHHHHHH
Q 004541 194 RKNELKNLWQHV 205 (746)
Q Consensus 194 ~~~eL~~~L~~v 205 (746)
+.+++..+++.+
T Consensus 95 s~e~a~~~v~~~ 106 (249)
T TIGR02311 95 TAEQAEAAVAAT 106 (249)
T ss_pred CHHHHHHHHHHc
Confidence 677766665543
No 218
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=61.34 E-value=37 Score=37.20 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhccCCCCccEE--EEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004541 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI--~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~~ 210 (746)
-++++++++++. ..+||| +..+-..++.+..+++.|++.++. |.-++.+....+.+.+..+.
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478899999764 358998 777777899999999999998753 44578888888888777663
No 219
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.26 E-value=70 Score=30.18 Aligned_cols=75 Identities=7% Similarity=-0.027 Sum_probs=55.9
Q ss_pred CCccEEEEcc--CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC-CCHHHHHHHHHHHHHH
Q 004541 132 NHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP-IRKNELKNLWQHVWRR 208 (746)
Q Consensus 132 ~~~DLVLlDi--MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP-i~~~eL~~~L~~vlrr 208 (746)
...+||.++. .-+.-|+.+++.||++..+.. -|-.++.--.+.+.-....|++.|..+. ..++.....+...-..
T Consensus 18 ~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~G--elRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~ 95 (110)
T PF06073_consen 18 DRLPLIAIDFPKFTDGRGFSQARLLRERYGYTG--ELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDFSVS 95 (110)
T ss_pred cCCCEEEEECCCcCCchHhHHHHHHHHHcCCCC--cEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCcc
Confidence 4678888887 567778999999996654443 3556788888889999999999998885 6666666655554333
No 220
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=61.21 E-value=53 Score=37.55 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=68.4
Q ss_pred ecChhHHHHHHHHHHhCCCE----EEEE-----------------------CCHHHHHHHHHhcCCCccEEEEcc-CCCC
Q 004541 94 ENDDSTRHVVAALLRNCGYE----VTEA-----------------------TNGLQAWKILEDLTNHIDLVLTEV-MPCL 145 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~----V~~A-----------------------~dG~EALe~L~~~~~~~DLVLlDi-MP~m 145 (746)
+++....+++.+.++..||+ |..+ -+.++|++++...-..|+|+.+.- ++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888989877664 3322 244888887775434588888887 8765
Q ss_pred CHHHHHHHHHhccCCCCccEEEEecC---CCHHHHHHHHhCCC-CeEEeCCCCHHHHHHHHHH
Q 004541 146 SGVALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGA-VDFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI~LTa~---~~~~~~~~al~aGa-ddyL~KPi~~~eL~~~L~~ 204 (746)
| ++-.++|++.- ...+|| +... .......++++.++ +.++.||-..--|..+++-
T Consensus 290 D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHH
Confidence 5 55556665431 123554 3333 24677788888776 5577899886555555543
No 221
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.93 E-value=79 Score=34.33 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=59.5
Q ss_pred EEEEEecChhHHHHHHHHH----HhCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAALL----RNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL----~~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||-|.+-.....+...+ +...+ .+. .+.+.+||++.+. ..+|+|++|-|.-.+=-++++.++ ...+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~---~GaDiI~LDn~~~e~l~~~v~~~~--~~~~ 228 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMN---AGADIVMCDNMSVEEIKEVVAYRN--ANYP 228 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHhh--ccCC
Confidence 3666665544443344444 33453 333 7899999999997 468999999853222223333331 1123
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
++ +|..++.-..+.+.++...|+|.+.
T Consensus 229 ~~-~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 229 HV-LLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred Ce-EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 44 5667888899999999999988654
No 222
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=60.91 E-value=85 Score=33.58 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=42.0
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCC------HHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~------~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
.+++++.||+. ..++|+++|+-+.. .....++.++|++.++.-....+++...+..+
T Consensus 74 ~~~~v~~ir~~--~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQK--HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 46667777643 24689888877654 56788999999999999888777776655544
No 223
>PRK04302 triosephosphate isomerase; Provisional
Probab=60.46 E-value=1.6e+02 Score=30.48 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=51.3
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc---CC---C-----CCH-HHHHHHHHhccCCCCccEEEEecC
Q 004541 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV---MP---C-----LSG-VALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 105 ~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi---MP---~-----mdG-lellr~IR~~~~~~~iPVI~LTa~ 171 (746)
......|+.++ ++.+.+++.. +.. ..+|+|-..- +. . -.. .++++.||+. ..++|||.-.+-
T Consensus 108 ~~a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~--~~~~pvi~GggI 182 (223)
T PRK04302 108 ERAKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV--NPDVKVLCGAGI 182 (223)
T ss_pred HHHHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc--cCCCEEEEECCC
Confidence 33345788777 4555555444 443 4566665421 10 1 111 3455667643 246899998888
Q ss_pred CCHHHHHHHHhCCCCeEEeC
Q 004541 172 DSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 172 ~~~~~~~~al~aGaddyL~K 191 (746)
...+.+.+++..|+|++|.-
T Consensus 183 ~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 183 STGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCHHHHHHHHcCCCCEEEEe
Confidence 88999999999999998754
No 224
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=60.40 E-value=62 Score=34.37 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=61.2
Q ss_pred EEecChhHHHHHHH------------HHHhCCCEEEE----------ECCHHHHHHHHHhcCCCccEEEEcc-CCC----
Q 004541 92 LVENDDSTRHVVAA------------LLRNCGYEVTE----------ATNGLQAWKILEDLTNHIDLVLTEV-MPC---- 144 (746)
Q Consensus 92 VVDDd~~~r~~L~~------------lL~~~G~~V~~----------A~dG~EALe~L~~~~~~~DLVLlDi-MP~---- 144 (746)
+|.|+..+..++.. +|...|.+|+. ..--.+|+++|.+ ..+|.+++++ ||-
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~--~~~DalVl~vliPtpGtk 195 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN--YEPDALVLVVLIPTPGTK 195 (275)
T ss_pred ecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhc--CCCCeEEEEEEecCCchh
Confidence 45688777766432 45666776651 2245679999987 8899999998 863
Q ss_pred C------CHHHHHHHHH-hccCCCCccEEEEecCCCHHH----HHHHHhCCCCeEEeCCCC
Q 004541 145 L------SGVALLSKIM-SHKTRKNLPVIMMSSLDSMGL----VFKCLSKGAVDFLVKPIR 194 (746)
Q Consensus 145 m------dGlellr~IR-~~~~~~~iPVI~LTa~~~~~~----~~~al~aGaddyL~KPi~ 194 (746)
| +--|.++.++ ++..+++ ||++=.++..-+. ..++..+|+| -|.+|.+
T Consensus 196 m~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~ 254 (275)
T COG1856 196 MGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR 254 (275)
T ss_pred ccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCc-eeecCCc
Confidence 1 2223444443 1334566 8887666554443 3346677765 6677754
No 225
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=60.30 E-value=29 Score=33.81 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=45.4
Q ss_pred cCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCccEEEEcc-CCC
Q 004541 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT----NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (746)
Q Consensus 83 ~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~----dG~EALe~L~~~~~~~DLVLlDi-MP~ 144 (746)
.++.+.+|+||.....+.+-|..+|...|+.|+.+. +.+++ ++ .-|||++-. -|.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 457788999999999999999999999999999887 44443 33 469999998 554
No 226
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=60.22 E-value=12 Score=40.56 Aligned_cols=58 Identities=7% Similarity=-0.119 Sum_probs=40.5
Q ss_pred CCCCchhhHHHHHHHHHhcC--------CCCCcccHHHHHHHHhCCccccCcccceeecCc-ceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG--------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDG-CEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~--------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G-~Gs~ftv~lpl~ 66 (746)
.|+|+|.. ...+.+.+... +.....+|++++++.+||. |.+.|.++ .|++|++.+|..
T Consensus 285 ~D~G~Gi~-~~~~~~if~~f~~~~~~~~g~GlGL~i~~~i~~~~gg~------i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 285 EDEGPGID-ESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQ------FFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred EECCCCCC-HHHHHHhCCCeEeCCCCCCCcCHHHHHHHHHHHHCCCE------EEEEECCCCCeEEEEEEecCC
Confidence 47899886 44556555321 2223488999999987765 55577777 899999999754
No 227
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.16 E-value=48 Score=36.38 Aligned_cols=91 Identities=18% Similarity=0.041 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHHHH---hC-C-CEEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCC
Q 004541 89 KVLLVENDDSTRHVVAALLR---NC-G-YEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~---~~-G-~~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~ 162 (746)
.|||-|.+-...-.+...++ .. . ..|. .+.+.+|+.+.+. ..+|+|++|-|+-.+--++++.++ .
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~---aGaDiImLDnmspe~l~~av~~~~------~ 248 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALA---HGAQSVLLDNFTLDMMREAVRVTA------G 248 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHhhc------C
Confidence 47777777655433333332 22 1 2343 7899999999997 468999999865434444444442 1
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
-.+|-.|+.-..+.+.+....|+|-+
T Consensus 249 ~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 249 RAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 24677888888999999999998743
No 228
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=60.02 E-value=9.6 Score=46.59 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=25.4
Q ss_pred ccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 27 NAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 27 ~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.-+|+.-++.|| |.|.+.|++|+|++|++.+|+..
T Consensus 541 MDVVk~~I~~Lg------G~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 541 MDVVKTNIEQLG------GSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred HHHHHHHHHHcC------CEEEEEecCCCCeEEEEecCcHH
Confidence 445555555554 55666899999999999999863
No 229
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.81 E-value=57 Score=35.38 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=58.6
Q ss_pred cEEEEEec-----ChhHHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVEN-----DDSTRHVVAALLRNCGYEVTEATNGLQAWK--------ILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDD-----d~~~r~~L~~lL~~~G~~V~~A~dG~EALe--------~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
|||.||-. .......+..+|+..|+++.......+.+. .+.. ..+|+||. -+.||. +++.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~---iGGDGT-lL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA---IGGDGT-ILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE---EeCcHH-HHHHH
Confidence 46777722 223445566777788998887543222211 1111 24666665 366773 34445
Q ss_pred HhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 155 R~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+ . ....+||+.+.. |-.+||. .+.++++..+|.++++.
T Consensus 75 ~-~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 75 H-K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred H-h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 4 2 235789988875 2235664 67889999999998865
No 230
>PRK04148 hypothetical protein; Provisional
Probab=59.80 E-value=19 Score=35.00 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=61.8
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
+..+||+|-== .-..+...|.+.|++|+.+.--.+|++.++. ...+++..|+ -|.+.=++-+..|
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~li---------- 81 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKLI---------- 81 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCEE----------
Confidence 34678888765 3334566777889999999988899998887 5678999999 7886544332222
Q ss_pred EEEEecCCCH----HHHHHHHhCCCCeEEeCCCCHHH
Q 004541 165 VIMMSSLDSM----GLVFKCLSKGAVDFLVKPIRKNE 197 (746)
Q Consensus 165 VI~LTa~~~~----~~~~~al~aGaddyL~KPi~~~e 197 (746)
.+-+.-. ..+.-+.+.|++ ++.+|+.-++
T Consensus 82 ---ysirpp~el~~~~~~la~~~~~~-~~i~~l~~e~ 114 (134)
T PRK04148 82 ---YSIRPPRDLQPFILELAKKINVP-LIIKPLSGEE 114 (134)
T ss_pred ---EEeCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCC
Confidence 2222222 233445566655 7778876554
No 231
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=59.75 E-value=38 Score=34.56 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=36.3
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl 139 (746)
++|||||-.--+...+..+|+..|+++....+.. .+ ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 5899999999999999999999999999887532 12 35888887
No 232
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.64 E-value=77 Score=33.98 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=61.1
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPV 165 (746)
.+++|+.+.+. ...+..+++..+. .|.......+..+++.. .|++|+=.-.+.-|+-+++.+. ..+||
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~~E~~~~~~~EAma-----~g~Pv 297 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSEKESFGLAALEAMA-----CGVPV 297 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCCcCCCccHHHHHHH-----cCCCE
Confidence 45555554432 2334445554443 24433333344444432 4565553322233666777763 45888
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
|+... . ...+.+..|..+|+.+|-+.++|...|..++.
T Consensus 298 I~s~~-~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 298 VASNA-G---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred EEeCC-C---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 86432 2 23456677888999999999999999988764
No 233
>PRK14098 glycogen synthase; Provisional
Probab=59.31 E-value=1.1e+02 Score=35.79 Aligned_cols=113 Identities=6% Similarity=0.021 Sum_probs=60.2
Q ss_pred ccEEEEEecCh-hHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDD-STRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~-~~r~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~i 163 (746)
.++++|+.+-+ .....|+++.+.++-.|.. .-+..++.+++.. .|++|+=-..+--|+..++.++ ..+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~~E~~Gl~~lEAma-----~G~ 406 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGKIESCGMLQMFAMS-----YGT 406 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCCCCCchHHHHHHHh-----CCC
Confidence 35566665432 2344555555544433332 2233444444432 4666543222344666666664 234
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
|+|+...-...+.+......+..+|+..|.++++|..+|.+++..
T Consensus 407 ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 407 IPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred CeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 555433222222222222235688999999999999999987654
No 234
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=59.29 E-value=28 Score=38.74 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCCccEEEEcc-CCCCC-HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 120 GLQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 120 G~EALe~L~~~~~~~DLVLlDi-MP~md-Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.+++.++++. ...+|+|.+|+ .+... -.+++++||+. ++++|||+= .-...+....+.++|++.++
T Consensus 99 ~~~~~~Lv~a-g~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAE-GLTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 3555555552 22459999999 87654 46889999754 566777652 22367788999999999765
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=59.06 E-value=92 Score=36.06 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=45.5
Q ss_pred ccEEEEEecChhHH---HHHHHHHHhCCCEEEEEC---CHHH----HHHHHHhcCCCccEEEEcc---CC-CCCHHHHHH
Q 004541 87 SLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NGLQ----AWKILEDLTNHIDLVLTEV---MP-CLSGVALLS 152 (746)
Q Consensus 87 ~lrVLVVDDd~~~r---~~L~~lL~~~G~~V~~A~---dG~E----ALe~L~~~~~~~DLVLlDi---MP-~mdGlellr 152 (746)
+.+|+||+-|..-. +.+..+.+..|..+.... +..+ +++.++. ..+|+||+|. ++ +-..++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCcccCHHHHHHHH
Confidence 67999999885432 234444566677766542 4433 3333333 5799999998 33 123444445
Q ss_pred HHHhccCCCCccEEEEecCC
Q 004541 153 KIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 153 ~IR~~~~~~~iPVI~LTa~~ 172 (746)
.|...- .++--++++.+..
T Consensus 207 ~i~~~v-~p~evllVlda~~ 225 (433)
T PRK10867 207 AIKAAV-NPDEILLVVDAMT 225 (433)
T ss_pred HHHHhh-CCCeEEEEEeccc
Confidence 553321 2333355555544
No 236
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.64 E-value=55 Score=35.92 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=61.9
Q ss_pred EEEEEecChhHHHHHHHHHH----hCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAALLR----NCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~----~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||-|.+-...-.+...++ ...+ .|. .+.+.+||.+.+. ..+|+|++|-|.--+--++++.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~---agaDiImLDnmspe~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA---AGADIIMLDNMSLEQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHhcC-----
Confidence 58887777665543444333 3342 344 7899999999997 4689999998544344444444421
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
-.+|-.++.-..+.+.+....|+|-+
T Consensus 241 -~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 241 -RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred -ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 24677888889999999999998743
No 237
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=58.63 E-value=91 Score=33.03 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCCCccE-EEEcc-C-CCCCH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCC-CCeEEe--
Q 004541 119 NGLQAWKILEDLTNHIDL-VLTEV-M-PCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV-- 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DL-VLlDi-M-P~mdG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aG-addyL~-- 190 (746)
+..+.++.+.+ ..+|. +++|+ - ..+.| +++++++++. ..+|||+.-+-.+.+++.+++..| ++..+.
T Consensus 156 ~~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 156 DAVEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAAS 230 (254)
T ss_pred CHHHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhH
Confidence 34455555555 45664 44444 1 11222 6888888754 369999999999999999999988 887443
Q ss_pred ----CCCCHHHHHHHHH
Q 004541 191 ----KPIRKNELKNLWQ 203 (746)
Q Consensus 191 ----KPi~~~eL~~~L~ 203 (746)
+-+++.++++.+.
T Consensus 231 a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 231 VFHYREITIGEVKEYLA 247 (254)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 4566666665554
No 238
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=58.53 E-value=38 Score=32.96 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecC
Q 004541 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 120 G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
..++++.++. ..||+||+|. ++..- ..+..++ ..+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt-aG~~~-~~~~~~~----~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET-VGVGQ-SEVDIAS----MADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC-CccCh-hhhhHHH----hCCEEEEEECCC
Confidence 4567777765 5899999999 66542 2333442 245566666665
No 239
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=58.35 E-value=4.6 Score=44.94 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=14.2
Q ss_pred ceeecCcceEEEEEEeec
Q 004541 48 AEDVKDGCEGAVTASAVL 65 (746)
Q Consensus 48 g~~S~~G~Gs~ftv~lpl 65 (746)
.++|.+|.|++|++.+|+
T Consensus 477 ~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 477 DLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred EEEECCCCCEEEEEEecC
Confidence 446777889999999874
No 240
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=58.34 E-value=36 Score=37.39 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=58.2
Q ss_pred EEEEEecChhHHHHHHHHHH----hCC-C-EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCC
Q 004541 89 KVLLVENDDSTRHVVAALLR----NCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~----~~G-~-~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~ 162 (746)
.|||-|.+-...-.+...++ ... . -.+.+.+.+||.+.+. ..+|+|++|-|+--+--++++.++ .+
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~---~gaDiI~LDn~s~e~~~~av~~~~-----~~ 252 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALK---AGADIIMLDNFTTEQMREAVKRTN-----GR 252 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH---cCCCEEEeCCCChHHHHHHHHhhc-----CC
Confidence 46666665444433344332 222 2 3347899999999997 468999999854323333444332 22
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
.+|..++.-..+.+.+....|+|-+
T Consensus 253 -~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 253 -ALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred -eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3677788888899999999998744
No 241
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.34 E-value=76 Score=37.53 Aligned_cols=109 Identities=9% Similarity=0.131 Sum_probs=60.6
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~-dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.+..|++||.|+...+.+ ++.|+.++..+ .-.+.|+.+.- .+.|.|+.-.--+.+-..++..+|+. .++++
T Consensus 439 ~g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~~~~~iv~~~~~~--~~~~~ 510 (558)
T PRK10669 439 AGIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGYEAGEIVASAREK--RPDIE 510 (558)
T ss_pred CCCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChHHHHHHHHHHHHH--CCCCe
Confidence 356778888777654333 34577766543 23445554443 46776665431111222345556554 36788
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
||+...+ .+......++|+|..+ -| ..++...+.+.+.
T Consensus 511 iiar~~~--~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l~ 548 (558)
T PRK10669 511 IIARAHY--DDEVAYITERGANQVV-MG--EREIARTMLELLE 548 (558)
T ss_pred EEEEECC--HHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHhc
Confidence 8887653 4566667789988555 44 3444455555443
No 242
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=58.07 E-value=86 Score=28.60 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=15.1
Q ss_pred ecChhHHHHHHHHHHhCCCEEEEEC
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTEAT 118 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~A~ 118 (746)
|.+......+...|...||.+....
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEch
Confidence 3444444556666667788886543
No 243
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=58.05 E-value=71 Score=34.95 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhccCCCCccEE--EEecCCCHHHHHHHHhCCCCeEE-----eCCCCHHHHHHHHHHHHHHh
Q 004541 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI--~LTa~~~~~~~~~al~aGaddyL-----~KPi~~~eL~~~L~~vlrr~ 209 (746)
-++++++++++. ..+||| +..+-..++....+++.|++.++ .|.-++.+....+...+..+
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 589999999764 359998 77777789999999999999875 45556777777777777664
No 244
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.00 E-value=1.2e+02 Score=32.63 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE------EeCCCCHHHHHHHHHHHHHHh
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy------L~KPi~~~eL~~~L~~vlrr~ 209 (746)
++++++|++. .++|||...+-.+.+++.+++.+||+.+ |.-|.-+.++..-+.+++.+.
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 4777888654 3699999999999999999999998754 335766777777777777654
No 245
>PRK00811 spermidine synthase; Provisional
Probab=57.84 E-value=70 Score=34.57 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=40.2
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCC------CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCG------YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G------~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~ 144 (746)
..+|.+||=|+.+.+..+..|..++ -+|. ...|+.+.++. ....||+||+|. -|.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 3489999999999999999987532 1343 46676665543 236899999998 664
No 246
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=57.65 E-value=26 Score=34.68 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=51.8
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEE--------------EECCHHHHHHHHHh--cCCCccEEEEcc--CCCCCH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT--------------EATNGLQAWKILED--LTNHIDLVLTEV--MPCLSG 147 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~--------------~A~dG~EALe~L~~--~~~~~DLVLlDi--MP~mdG 147 (746)
+.+||||+.--..+.+.+...|+...+.+. .+-.-.-....+.. ....||+||+|- .-|-.-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 678999999999999999999987654332 11122233333332 134699999995 545445
Q ss_pred HHHHHHHHhccCCCCccEEEEecC
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~ 171 (746)
+.+.-.|+.........+|+||+-
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HhhheeHHHhhhccCeeEEEEeCC
Confidence 555555655443445689999984
No 247
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.47 E-value=1.5e+02 Score=34.06 Aligned_cols=102 Identities=12% Similarity=0.218 Sum_probs=63.3
Q ss_pred CccEEEEEec---C-hhHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCccEEEEccCCCC-------C-----
Q 004541 86 RSLKVLLVEN---D-DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCL-------S----- 146 (746)
Q Consensus 86 ~~lrVLVVDD---d-~~~r~~L~~lL~~~-G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~m-------d----- 146 (746)
.+.-|++||- + ....+.++.+=+.+ +..++ -+.+.++|..++. ..+|.|..-+=|+- +
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEECCCCCcCCcceeecCCCCC
Confidence 4567888874 2 22223333333333 34444 3788999988887 36888875432321 1
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
-+.++..+++......+|||+=.+.....++.+++.+||+.++.
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 23333333322112468999999999999999999999998763
No 248
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.27 E-value=1.2e+02 Score=31.77 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC-CCccEEEEecCCCHHHHHHHH
Q 004541 105 ALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR-KNLPVIMMSSLDSMGLVFKCL 181 (746)
Q Consensus 105 ~lL~~~G~-~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~-~~iPVI~LTa~~~~~~~~~al 181 (746)
..|...+. -|+...+.++++.+++.. ..--|=++.+ |-.-..++++++|++.... +++ +|-.-.-.+.+...++.
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~-~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELYKDDPEV-LIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCe-EEeeeeCCCHHHHHHHH
Confidence 44444443 344556666666655432 1122345566 6556678888888754211 122 33334455677888999
Q ss_pred hCCCCeEEeCCCCHHHHHHHHH
Q 004541 182 SKGAVDFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 182 ~aGaddyL~KPi~~~eL~~~L~ 203 (746)
++|+. ||.-|.--.++.+..+
T Consensus 86 ~aGA~-FivsP~~~~~v~~~~~ 106 (213)
T PRK06552 86 LAGAQ-FIVSPSFNRETAKICN 106 (213)
T ss_pred HcCCC-EEECCCCCHHHHHHHH
Confidence 99976 8888887777766543
No 249
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=57.27 E-value=1.3 Score=45.62 Aligned_cols=74 Identities=35% Similarity=0.369 Sum_probs=56.5
Q ss_pred CCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 132 NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 132 ~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
..+|+++.++ ||.+.++.++..+.......++|++++............+..++.+|+.||+...+|......+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 5689999999 9999999999988654556677777777766666667777778899999999855444444433
No 250
>PRK10060 RNase II stability modulator; Provisional
Probab=57.16 E-value=71 Score=38.56 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc--CCC----CCHHHHHHHHHhccCCCCccEEEEecC
Q 004541 100 RHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPC----LSGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi--MP~----mdGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
...+...|+..|+.+.. +.+|-.-+..|.. -++|.|=+|- +-+ .....+++.|-.......+.|| ..+-
T Consensus 543 ~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGV 619 (663)
T PRK10060 543 ALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGV 619 (663)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecC
Confidence 34455667888998875 6688888999987 7899999995 322 3345666666433223456555 5677
Q ss_pred CCHHHHHHHHhCCCC----eEEeCCCCHHHHHHHHHHH
Q 004541 172 DSMGLVFKCLSKGAV----DFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 172 ~~~~~~~~al~aGad----dyL~KPi~~~eL~~~L~~v 205 (746)
...+....+...|++ .|+.||+..+++...|.+.
T Consensus 620 Et~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~ 657 (663)
T PRK10060 620 ETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred CCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhh
Confidence 777888888899986 3578999999988877553
No 251
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=57.04 E-value=40 Score=36.85 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEEEEecChhHH-------HHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 89 KVLLVENDDSTR-------HVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 89 rVLVVDDd~~~r-------~~L~~lL~~~G-~~V-~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
.|||-|.+-... ..+..+=+..+ ..| +.+.+.+||.+.+. ..+|+|++|-|+-.+--++++.+++.
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~---agaDiI~LDn~~~e~l~~av~~~~~~-- 233 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALR---AQPDVLQLDKFSPQQATEIAQIAPSL-- 233 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHhhcc--
Confidence 366665554332 33333333333 223 37889999999997 46999999986544444555555322
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.+. .+|-.++.-..+.+.+....|+|-+.
T Consensus 234 ~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 234 APH-CTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CCC-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 233 36778888899999999999987543
No 252
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=57.03 E-value=84 Score=34.71 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=57.0
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--C----C-CC-CHHHHHHHHHhccCCCCccEEEEecCCC
Q 004541 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M----P-CL-SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 103 L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--M----P-~m-dGlellr~IR~~~~~~~iPVI~LTa~~~ 173 (746)
+...|+..|..|. .+.+.++|...++. .+|+|++-= - . .. +-+.|+..++.. .++|||+--+-.+
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCC
Confidence 4466788898777 79999999987764 589888763 2 1 22 247788888654 3599999988888
Q ss_pred HHHHHHHHhCCCCeEEeC
Q 004541 174 MGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 174 ~~~~~~al~aGaddyL~K 191 (746)
...+..++.+||+++..=
T Consensus 202 g~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 202 GRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHHCT-SEEEES
T ss_pred HHHHHHHHHcCCCEeecC
Confidence 889999999999998743
No 253
>PLN02591 tryptophan synthase
Probab=56.99 E-value=1.1e+02 Score=32.93 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhccCCCCccEEEEecCCC------HHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHH
Q 004541 146 SGVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI~LTa~~~------~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vl 206 (746)
+.+++++++|. ..++|+|+||-+.. .....+|.++|++++|.-.+.++|....+..+.
T Consensus 65 ~~~~~~~~~r~---~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAP---QLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhc---CCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 35777777763 25689999987542 345778999999999999998888877666653
No 254
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=56.79 E-value=14 Score=41.16 Aligned_cols=58 Identities=12% Similarity=-0.076 Sum_probs=40.8
Q ss_pred CCCCchhhHHHHHHHHHhcC------------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG------------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~------------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|.. ...+.+.+... +....++|++++++.++|. +.+.+.++.|++|++.+|+.
T Consensus 389 ~D~G~Gi~-~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~------l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 389 DDDGPGVP-EEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGW------VKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred EECCCCCC-HHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCE------EEEEECCCCeEEEEEEeeCC
Confidence 47888876 44666665321 1233588999999987775 45567788899999998864
No 255
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=56.57 E-value=90 Score=32.13 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=51.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~-V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iP 164 (746)
.+|..||-++.....++.-|+..|.. +. ...|..+.+.. ....||+||+|- --.--..++++.|........--
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~ 153 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEA 153 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCc
Confidence 37999999999999999999888763 33 34555544422 124699999997 22222345677775533223334
Q ss_pred EEEEecCC
Q 004541 165 VIMMSSLD 172 (746)
Q Consensus 165 VI~LTa~~ 172 (746)
||++....
T Consensus 154 iv~ve~~~ 161 (199)
T PRK10909 154 LIYVESEV 161 (199)
T ss_pred EEEEEecC
Confidence 66665443
No 256
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=56.36 E-value=42 Score=41.23 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=51.9
Q ss_pred CCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEc-c-C-CC-CCHHHHHHHHHhccC
Q 004541 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PC-LSGVALLSKIMSHKT 159 (746)
Q Consensus 84 ~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlD-i-M-P~-mdGlellr~IR~~~~ 159 (746)
+..+.+|||||-...+...+..+|+..|+++.++.... ..+.+.. ..||.||+= = | |. .+-.++++++.
T Consensus 513 ~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~---- 585 (717)
T TIGR01815 513 GGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAAL---- 585 (717)
T ss_pred CCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHH----
Confidence 34678999999998889999999999999988765432 1222332 458888772 1 2 21 12234444432
Q ss_pred CCCccEEEEec
Q 004541 160 RKNLPVIMMSS 170 (746)
Q Consensus 160 ~~~iPVI~LTa 170 (746)
...+||+-+.-
T Consensus 586 ~~~iPvLGICL 596 (717)
T TIGR01815 586 ARGLPVFGVCL 596 (717)
T ss_pred HCCCCEEEECH
Confidence 24689988764
No 257
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.31 E-value=1.9e+02 Score=30.89 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=52.5
Q ss_pred EEEEE-ecChhH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhc
Q 004541 89 KVLLV-ENDDST---RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (746)
Q Consensus 89 rVLVV-DDd~~~---r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~ 157 (746)
+|.|+ +|++.- ...++..|++.|.+|+. ..|....+..++. ..+|+||+-.. ..++..+++.+++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~-~~~~~~~~~~~~~~ 215 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY-PETGSGILRSAYEQ 215 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc-cchHHHHHHHHHHc
Confidence 44333 455543 34567778888988763 2466777888876 78999987542 23788888988765
Q ss_pred cCCCCccEEEEecCCCHH
Q 004541 158 KTRKNLPVIMMSSLDSMG 175 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~ 175 (746)
. -..++|..+......
T Consensus 216 G--~~~~~~~~~~~~~~~ 231 (312)
T cd06346 216 G--LFDKFLLTDGMKSDS 231 (312)
T ss_pred C--CCCceEeeccccChH
Confidence 4 356676654444433
No 258
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=56.31 E-value=21 Score=36.67 Aligned_cols=60 Identities=17% Similarity=0.049 Sum_probs=40.5
Q ss_pred CCCCchhhHHHHHHHHHhcC--------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCCC
Q 004541 2 NVDGKADKRLQELNHCLQAG--------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMP 68 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~--------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~~ 68 (746)
.|+|+|.... .+.+.|... +....++|++.+++.+||.+.. .+.+|.|++|++.+|....
T Consensus 265 ~D~G~Gi~~~-~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~------~~~~~~Gt~~~i~lP~~~~ 332 (336)
T COG0642 265 EDTGPGIPEE-ELERIFEPFFRTDKSRSGTGLGLAIVKRIVELHGGTISV------ESEPGKGTTFTIRLPLAPA 332 (336)
T ss_pred EcCCCCCCHH-HHHHhccCeeccCCCCCCCCccHHHHHHHHHHcCCEEEE------EecCCCceEEEEEEecccc
Confidence 4789988744 366666211 2345588999977777776544 5555788889999987643
No 259
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=56.30 E-value=41 Score=33.88 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-------HHHHHHHHhccC--CCCccEE
Q 004541 100 RHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVI 166 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~---A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-------lellr~IR~~~~--~~~iPVI 166 (746)
.......++..|..+.. ..+..+.++.+.. ..|.|+++. -|+..| ++.++++++... ...+||+
T Consensus 93 ~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~ 169 (210)
T TIGR01163 93 IHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIE 169 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 33444666666765543 3345666666643 367788876 555444 344555543221 1236765
Q ss_pred EEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+.-+- ..+.+.+++..|++.++.-
T Consensus 170 v~GGI-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 170 VDGGV-NDDNARELAEAGADILVAG 193 (210)
T ss_pred EECCc-CHHHHHHHHHcCCCEEEEC
Confidence 55554 4678888899999977543
No 260
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=56.28 E-value=80 Score=30.40 Aligned_cols=87 Identities=17% Similarity=0.073 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhC-CCEEEE-ECCHHHHHHH-HHhcCCCccEEEEcc-CCCCCH-------HHHHHHHHhccCCCCccEEE
Q 004541 99 TRHVVAALLRNC-GYEVTE-ATNGLQAWKI-LEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 99 ~r~~L~~lL~~~-G~~V~~-A~dG~EALe~-L~~~~~~~DLVLlDi-MP~mdG-------lellr~IR~~~~~~~iPVI~ 167 (746)
..+.+..+-+.+ ++.+.. +....+..+. +.+ ...|.|.++. .+...+ ...+..++. ...+||++
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~~ 175 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEE--AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIA 175 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHH--cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---cCCCCEEE
Confidence 445555555544 555442 2222221111 333 4578898887 664332 233444432 35789999
Q ss_pred EecCCCHHHHHHHHhCCCCeEEe
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~ 190 (746)
..+-...+.+.+++..|++.+..
T Consensus 176 ~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 176 GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred ECCCCCHHHHHHHHHhCCCEEEe
Confidence 88888878888999999987753
No 261
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.22 E-value=87 Score=37.35 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=50.0
Q ss_pred ccEEEEEecChhH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCH--HHHHHHHHhccC
Q 004541 87 SLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKT 159 (746)
Q Consensus 87 ~lrVLVVDDd~~~---r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdG--lellr~IR~~~~ 159 (746)
+.+|+||+-|..- .+.+..+-+.+|+.+..+.+..+..+.++.. ..+|+||+|. +...+- .+.+..|+...
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~- 457 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR- 457 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-
Confidence 3579998876522 2334444455677788788777777777653 4699999998 432222 22334444322
Q ss_pred CCCccEEEEecCCCH
Q 004541 160 RKNLPVIMMSSLDSM 174 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~ 174 (746)
....+++|.+....
T Consensus 458 -~~a~lLVLpAtss~ 471 (559)
T PRK12727 458 -QVTSLLVLPANAHF 471 (559)
T ss_pred -cCCcEEEEECCCCh
Confidence 22346666665443
No 262
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=56.17 E-value=1.9e+02 Score=30.52 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=65.5
Q ss_pred ccEEEEEecChh---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 87 SLKVLLVENDDS---TRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 87 ~lrVLVVDDd~~---~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
.++++||.+.+. ....+...+...+. .|....-..+..+++.. .|++|+=. -++.-|..+++.+.
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a----- 286 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA----- 286 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh-----
Confidence 456777765432 33334445555543 34444444455555543 56666543 44555677887773
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+. .... ..+.+..+..+++..|-+.++|...|..++.
T Consensus 287 ~G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 287 MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred cCCCEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 45788753 3322 3455666778999999999999999975554
No 263
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.13 E-value=91 Score=36.02 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred CccEEEEEecChh---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCccEEEEcc---CC-CCCHHHHH
Q 004541 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV---MP-CLSGVALL 151 (746)
Q Consensus 86 ~~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~---dG----~EALe~L~~~~~~~DLVLlDi---MP-~mdGlell 151 (746)
.+.+|+||+-|.. ..+.|..+-+..|..+..+. +. .++++.+.. ..+|+||+|. ++ +-..++.+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccccCHHHHHHH
Confidence 4679999998843 23334445555676666543 33 234455444 6799999998 22 12245555
Q ss_pred HHHHhccCCCCccEEEEecCC
Q 004541 152 SKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 152 r~IR~~~~~~~iPVI~LTa~~ 172 (746)
..|...- .++-.++++.+..
T Consensus 205 ~~i~~~~-~p~e~lLVvda~t 224 (428)
T TIGR00959 205 AAIKEIL-NPDEILLVVDAMT 224 (428)
T ss_pred HHHHHhh-CCceEEEEEeccc
Confidence 5554321 2333355555543
No 264
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=56.08 E-value=64 Score=36.11 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=61.2
Q ss_pred ccEEEEEecChhHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHhcCCCccE-EEEccCCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVTE-ATNGLQAWKILEDLTNHIDL-VLTEVMPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~-G~~V~~-A~dG~EALe~L~~~~~~~DL-VLlDiMP~mdGlellr~IR~~~~~~~i 163 (746)
.+||.||.- -.-+..+..+.+.. +++++. +....+..+.+.+ .|.+ +..|+ +.|-. ..++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~---~~gi~~y~~~----------eell~---d~Di 65 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAH---RLGVPLYCEV----------EELPD---DIDI 65 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---HhCCCccCCH----------HHHhc---CCCE
Confidence 478999997 54444444444433 688773 4444443343432 2322 22322 12211 2455
Q ss_pred cEEEEe----cCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 164 PVIMMS----SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 164 PVI~LT----a~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
-+|.+. .....+...+|+++|..-++-||+..+|..++++.+-+
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555552 13456888999999999999999998777776665544
No 265
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.56 E-value=78 Score=32.58 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCcc-EEEEcc-CCCC---CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~D-LVLlDi-MP~m---dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+.++.+.+ ..++ |+++|+ .-++ --++++++|++. ..+|||+-.+-.+.+++.+++..|+++++.
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 45566666655 3343 566766 4222 237888888653 369999999999999999999999998764
No 266
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=55.52 E-value=58 Score=33.56 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCcc-EEEEcc-CCC-CCH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCC-CCeEEe
Q 004541 119 NGLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~D-LVLlDi-MP~-mdG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aG-addyL~ 190 (746)
+..+.++.+.+ ..++ |+++|. .-+ +.| ++++++|++. ..+|||+-.+-.+.+++.++++.| +++++.
T Consensus 147 ~~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 147 TAEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CHHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 34566666665 4456 788887 433 245 7888888654 349999999999999999999988 998874
No 267
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=55.35 E-value=1.7e+02 Score=32.29 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=67.7
Q ss_pred cEEEEEecC---h-hHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 88 LKVLLVEND---D-STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 88 lrVLVVDDd---~-~~r~~L~~lL~~~G~--~V~~A~--dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
++++||.+. - .....+..+.+..+. .|.... +.++..+++.. .|+.++-...+.-|+-+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~~E~~g~~~lEAma---- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSYNESFGLVAMEAQA---- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCCCCCcChHHHHHHH----
Confidence 667777531 1 334556666666654 344322 34566666654 5666654433334677777773
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+..... ..+.+..|..+++..|-+.++|.++|.+++.
T Consensus 325 -~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 325 -CGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred -cCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 458998644322 2345567788899999999999999999875
No 268
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=54.91 E-value=1.4e+02 Score=32.16 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=62.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCG--YEVTEA--TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G--~~V~~A--~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
+.+||.||----.........|...+ ++++.+ .+.+.|-+..++ ..+..+..|+ +.+-+.+ ..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~--~~~~~~~~~~----------~~ll~~~-~i 68 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE--FGIAKAYTDL----------EELLADP-DI 68 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH--cCCCcccCCH----------HHHhcCC-CC
Confidence 45788999876555555555555554 466654 455555555554 2222233332 2221111 13
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEEeCCCC--HHHHHHHHHHH
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~--~~eL~~~L~~v 205 (746)
++-+|........+...+++++|..-|+-||+. .+|..+++...
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 444444444556678899999999999999984 56666555443
No 269
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=54.43 E-value=1.1e+02 Score=32.96 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=58.7
Q ss_pred EEEEEecChhHHHH----HHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHV----VAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~----L~~lL~~~G--~~V-~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||.|++....-. +..+=+..+ ..+ +.+.+.+|+.+.+. ..+|.|.+|-|. ++.++++.+.. ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~---~gaDyI~ld~~~----~e~l~~~~~~~-~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE---AGADIIMLDNMS----PEELREAVALL-KG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH---cCCCEEEECCcC----HHHHHHHHHHc-CC
Confidence 57888887554422 222222234 223 47899999999886 468999999853 45566654332 12
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
++||+++-+ -..+.+.+....|++.+
T Consensus 226 ~ipi~AiGG-I~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 226 RVLLEASGG-ITLENIRAYAETGVDYI 251 (268)
T ss_pred CCcEEEECC-CCHHHHHHHHHcCCCEE
Confidence 578766544 55778889999998865
No 270
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=54.37 E-value=1.8e+02 Score=29.84 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=63.4
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEE--EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~ 162 (746)
.++++|+.+.. ....+..+++..+. .|. -.-+.++..+++.. .|++|+-...+.-|..+++.+. ..
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~~~~~~~~~Ea~~-----~g 299 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLYEGFGLVLLEAMA-----AG 299 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchhccccchHHHHHH-----cC
Confidence 45666666433 34444444433322 232 23344666677754 5777765422344566777663 45
Q ss_pred ccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 163 iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+|||+..... ..+.+..+-.+++..+.++++|.+.|.+++.
T Consensus 300 ~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 300 LPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred CcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 7887544322 2344455678899999999999999998765
No 271
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.98 E-value=41 Score=35.71 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=47.5
Q ss_pred cEEEEEecCh------hHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccC
Q 004541 88 LKVLLVENDD------STRHVVAALLRNCGYEVTEA-TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 88 lrVLVVDDd~------~~r~~L~~lL~~~G~~V~~A-~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~ 159 (746)
|+||++-... .....+...|.+.|++|..+ .+.....+.+.. ..||||.+-. ....-.+.++.++.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHHH----
Confidence 4677776554 35666778888899988844 344445555554 7899998866 55544555555542
Q ss_pred CCCccEEEE
Q 004541 160 RKNLPVIMM 168 (746)
Q Consensus 160 ~~~iPVI~L 168 (746)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 35777654
No 272
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.94 E-value=91 Score=33.59 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred EEEEEecChhHHHH----HHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 89 KVLLVENDDSTRHV----VAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 89 rVLVVDDd~~~r~~----L~~lL~~~G--~~V-~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
.|||-|++....-. +..+-+..+ ..+ +.+.+.+|+++.+. ..+|+|.+|- -|+ .--++++.++..
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~e-~l~~~v~~i~~~--- 225 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALE---AGADIIMLDNMSPE-ELKEAVKLLKGL--- 225 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHhccC---
Confidence 57777776544422 223323344 333 47889999999886 4689999998 441 111223333221
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
+++||+ .++--..+.+.+....|++.+-
T Consensus 226 ~~i~i~-asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 226 PRVLLE-ASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred CCeEEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 456654 5666677888899999998664
No 273
>PRK10742 putative methyltransferase; Provisional
Probab=53.88 E-value=1.1e+02 Score=33.07 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=40.8
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC------GY----EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~------G~----~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~ 144 (746)
.+.+|..||-++.+..+|..-|+.. +. ++. ...+..+.|+. ....||+|++|- -|.
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPH 176 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCC
Confidence 3678999999999999999999884 21 233 34555555554 335799999998 565
No 274
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=53.82 E-value=77 Score=35.56 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=43.3
Q ss_pred cEEEEEecChh-----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEA---------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~-----~r~~L~~lL~~~G~~V~~A---------~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
.|||||-|... ....+...|+..|+++..+ .+..++++++++ ..+|+||- +-+.+-+++.+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia--vGGGS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE--EGCDFVVG--LGGGSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCCccHHHHHHH
Confidence 58999988654 3356778888878776644 345577777776 78999985 445555666555
Q ss_pred H
Q 004541 154 I 154 (746)
Q Consensus 154 I 154 (746)
+
T Consensus 102 i 102 (380)
T cd08185 102 I 102 (380)
T ss_pred H
Confidence 5
No 275
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=53.72 E-value=61 Score=42.20 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=69.6
Q ss_pred cEEEEE----ecChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CC-CCCH-HHHHHHHHhc
Q 004541 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSH 157 (746)
Q Consensus 88 lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP-~mdG-lellr~IR~~ 157 (746)
.+|||. |-+..=..++.-+|+..||+|+-. -..++.++.+++ ..+|+|.+-. |. .+.. .++++.|++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 478887 888888889999999999999843 356778888887 7899999988 64 4443 5678888765
Q ss_pred cCCCCccEEEEecCCCHHH-HHHH--HhCCCCeEEe
Q 004541 158 KTRKNLPVIMMSSLDSMGL-VFKC--LSKGAVDFLV 190 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~-~~~a--l~aGaddyL~ 190 (746)
..++||++=-+..+... ..++ .-.|++.|..
T Consensus 830 --g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 830 --GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred --CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 45788877665554433 1111 1128776654
No 276
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.67 E-value=1.5e+02 Score=31.16 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=39.7
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhcc--CCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~--~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP 192 (746)
...+.++|+++++.. ..--|=++.+ |-.-+.++.++.|++.. .++++ +|-.-.--+.+....+.++|+. ||.-|
T Consensus 22 r~~~~~~a~~~~~al-~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~-FiVsP 98 (222)
T PRK07114 22 YHADVEVAKKVIKAC-YDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGAN-FIVTP 98 (222)
T ss_pred EcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCC-EEECC
Confidence 444555555444321 0111223344 44444555555554221 12222 2223333455666777777765 66666
Q ss_pred CCHHHHHHHHH
Q 004541 193 IRKNELKNLWQ 203 (746)
Q Consensus 193 i~~~eL~~~L~ 203 (746)
.--.+|.+..+
T Consensus 99 ~~~~~v~~~~~ 109 (222)
T PRK07114 99 LFNPDIAKVCN 109 (222)
T ss_pred CCCHHHHHHHH
Confidence 65555554433
No 277
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=53.59 E-value=40 Score=34.78 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHH
Q 004541 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (746)
Q Consensus 142 MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~ 201 (746)
|-.-+.+++++.|++.. +++ +|-.-.-.+.+...++.++||. |+.-|.--.++.+.
T Consensus 41 ~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~ 96 (196)
T PF01081_consen 41 LRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEY 96 (196)
T ss_dssp TTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHH
T ss_pred cCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 44445566666665432 443 2333334455666777777765 66666554444433
No 278
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=53.52 E-value=1.5e+02 Score=32.80 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=54.8
Q ss_pred CccEEEEEecChhHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCccEEEEcc---CCCCCH-HHHH
Q 004541 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV---MPCLSG-VALL 151 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r---~~L~~lL~~~G~~V~~A~---dG----~EALe~L~~~~~~~DLVLlDi---MP~mdG-lell 151 (746)
.+.+|+|++-|..-. +.+..+....+..++... +. .+++..... ..||+||+|. ++.-+. ++-+
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTaGr~~~~~~l~~eL 218 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTAGRLHNKTNLMEEL 218 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCCCCCcCCHHHHHHH
Confidence 467999999776322 334455555676666543 22 234444333 6799999998 332222 3333
Q ss_pred HHHHhc-----cCCCCccEEEEecCCCHHHHHHHHh----CCCCeEEe
Q 004541 152 SKIMSH-----KTRKNLPVIMMSSLDSMGLVFKCLS----KGAVDFLV 190 (746)
Q Consensus 152 r~IR~~-----~~~~~iPVI~LTa~~~~~~~~~al~----aGaddyL~ 190 (746)
++|... +..++-.++++.+......+.++.. .+.+.++.
T Consensus 219 ~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 219 KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred HHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEE
Confidence 443221 2234445777777665544333322 35555443
No 279
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=53.51 E-value=16 Score=40.55 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=40.2
Q ss_pred CCCCchhhHHHHHHHHHhcC----------CCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQAG----------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~----------~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|+|.. ...+.+.+... +.....+||+++++.+||.+ .+.+.++.|+.|++.+|+.
T Consensus 367 ~D~G~Gi~-~~~~~~~~~~f~~~~~~~~~~g~GlGL~iv~~i~~~~~g~l------~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 367 EDDGPGIP-PEQLKHLFQPFTRGDSARGSSGTGLGLAIVKRIVDQHNGKV------ELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred EecCCCcC-HHHHHHhcCCcccCCCCCCCCCeehhHHHHHHHHHHCCCEE------EEEECCCCcEEEEEEEeCC
Confidence 47899875 34566655321 11234899999999987754 4466778899999998864
No 280
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.45 E-value=1.5e+02 Score=31.31 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhcCCCcc-EEEEcc-----CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhC-CCCeEEe-
Q 004541 119 NGLQAWKILEDLTNHID-LVLTEV-----MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLV- 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~D-LVLlDi-----MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~a-GaddyL~- 190 (746)
+..+.++.+.+ ..++ |+++|+ +.+. -+++++++++. ..+|||+--+-.+.+++.++++. |++..+.
T Consensus 154 ~~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 154 DAVEWAKEVEE--LGAGEILLTSMDRDGTKNGY-DLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEh
Confidence 34455555554 4555 667554 2222 27788888654 36899999999999999999975 9987765
Q ss_pred -----CCCCHHHHHHHHH
Q 004541 191 -----KPIRKNELKNLWQ 203 (746)
Q Consensus 191 -----KPi~~~eL~~~L~ 203 (746)
.-+++.+++..+.
T Consensus 228 ~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 228 SIFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 4566777766654
No 281
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=53.35 E-value=78 Score=37.99 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=57.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~-dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.+..+++||.|+...+.+ ++.|+.++..+ +-.+.|+.+.- .+.|+||.-.--+.+-..++..+|+. .++++
T Consensus 422 ~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~~~n~~i~~~~r~~--~p~~~ 493 (601)
T PRK03659 422 NKMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEPEDTMKIVELCQQH--FPHLH 493 (601)
T ss_pred CCCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCHHHHHHHHHHHHHH--CCCCe
Confidence 456778888777654433 34577766543 23334444432 45666665441123345666677654 47888
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
||+-+. +.+...+..++|++.++.
T Consensus 494 IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 494 ILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 887665 446778889999997763
No 282
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=53.29 E-value=18 Score=42.88 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCCCchhhHHHHHHHHHhc--------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeec
Q 004541 2 NVDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl 65 (746)
.|+|||+- ...+.|+|.. .+....++|+..|++-|||.+.+ .+.++.|+.|++.++.
T Consensus 537 rDnGpGi~-~e~~~~lFePF~TtK~~~~GLGLGLaIS~~i~~d~GGsL~v------~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 537 RDNGPGIA-PEALPHLFEPFFTTKPVGKGLGLGLAISQNIARDLGGSLEV------ANHPEGGASFTIELRR 601 (603)
T ss_pred ccCCCCCC-HHHHHhhcCCccccCcccCCcchhHHHHHHHHHHhCCeEEe------ecCCCCceEEEEEeec
Confidence 58999986 5578888832 23344599999999999998766 3556889999999874
No 283
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=53.11 E-value=37 Score=35.70 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~--dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~I 154 (746)
.+|.-||-++......++.|++.|+ +|.... +..+.++.. ....||+||+|. ..--.-++.+..+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~--~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL--LDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc--cCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 3899999999999999999999987 344433 555555442 237899999998 3334455544444
No 284
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=53.06 E-value=84 Score=33.56 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=38.0
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-----~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~ 144 (746)
.+|.+||-++.+.+..+..|..++ -++. ...|+.+.++.. ...||+||+|. -|.
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPV 157 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCC
Confidence 479999999999999998886542 1232 345666655433 36899999998 554
No 285
>PRK15320 transcriptional activator SprB; Provisional
Probab=52.77 E-value=33 Score=35.77 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=68.9
Q ss_pred EEEEEecChhHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccE
Q 004541 89 KVLLVENDDSTRHVVAALLRNC--GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~--G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPV 165 (746)
.|+|-.|+-.+.-.+..++++. |..|.++......|..+.. .||.+|+=. -|..-- =+...|++. .++-||
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~-~lf~~l~~~--l~~~~v 76 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHV-YLFHALLTR--LQNRKV 76 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHH-HHHHHHHHH--cCCCce
Confidence 5888899999999999999876 7888899998888888875 577777655 565433 344555443 467789
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
++++..--..++.-..-.|+-+|+.|
T Consensus 77 ~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 77 LVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred EEEecceeehhhhhhhhhcchhHHHH
Confidence 99887654444333444577777654
No 286
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=52.43 E-value=90 Score=33.75 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=47.9
Q ss_pred EEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 115 TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 115 ~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+.+.+.+||++.++ ...|.|.+|- -|. +--++++.++.. .+++||+++-+ -..+.+.+....|++.+..
T Consensus 188 Vev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 47889999998875 4689999998 553 112444445322 24688766554 4678888999999987643
No 287
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=52.24 E-value=1e+02 Score=34.65 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=44.6
Q ss_pred cEEEEEecChhHH-----HHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 88 LKVLLVENDDSTR-----HVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~r-----~~L~~lL~~~G~~V~~A~d---------G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
.|+|||-|..... ..+...|+..|+++..+.. ..++++.+++ ..+|+||- +-+.+-+++.+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA--LGGGSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHH
Confidence 4899998876544 6788888888887765543 5677788877 78898886 555555666655
Q ss_pred H
Q 004541 154 I 154 (746)
Q Consensus 154 I 154 (746)
|
T Consensus 100 i 100 (375)
T cd08179 100 M 100 (375)
T ss_pred H
Confidence 4
No 288
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=52.12 E-value=1.9e+02 Score=31.06 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=48.3
Q ss_pred cEEEEEecCh----hHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 88 LKVLLVENDD----STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 88 lrVLVVDDd~----~~r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
.+|.||-++. .....+...|+..|++|+. ..+-...+..|+. ..+|+||+... ..+...+++.+++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~~-~~~~~~~~~~~~~ 218 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAGH-FPDAVLLVRQMKE 218 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECCc-chhHHHHHHHHHH
Confidence 3555544443 2345567778888998863 1345556677766 67999998652 2356778888865
Q ss_pred ccCCCCccEEEEec
Q 004541 157 HKTRKNLPVIMMSS 170 (746)
Q Consensus 157 ~~~~~~iPVI~LTa 170 (746)
.. ...++++.+.
T Consensus 219 ~g--~~~~~~~~~~ 230 (345)
T cd06338 219 LG--YNPKALYMTV 230 (345)
T ss_pred cC--CCCCEEEEec
Confidence 43 3456665544
No 289
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=51.68 E-value=96 Score=40.38 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=71.7
Q ss_pred cEEEEE----ecChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CC-CCCH-HHHHHHHHhc
Q 004541 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSH 157 (746)
Q Consensus 88 lrVLVV----DDd~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP-~mdG-lellr~IR~~ 157 (746)
-+|||. |-+..=..++.-+|+..||+|+-. -..++.++.+++ ..+|+|-+-. |. -+.. .++++.|++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 478877 778888888999999999999843 356788888887 7899999987 63 4444 5678888765
Q ss_pred cCCCCccEEEEecCCCHHHHHHH---HhCCCCeEEeCC
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKC---LSKGAVDFLVKP 192 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~a---l~aGaddyL~KP 192 (746)
...+||++=-+.........- .-.|++.|-.-.
T Consensus 811 --g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA 846 (1178)
T TIGR02082 811 --GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDA 846 (1178)
T ss_pred --CCCceEEEeccccchhHHHhhhhhhccCCeEEecCH
Confidence 356888776665555554321 123887776433
No 290
>PRK13560 hypothetical protein; Provisional
Probab=51.49 E-value=12 Score=45.03 Aligned_cols=35 Identities=6% Similarity=-0.083 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 24 ~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
...++||++|++++||.|.+. |. .|++|++.+|+.
T Consensus 770 gLGLai~~~iv~~~gG~I~v~------S~--~Gt~F~i~lP~~ 804 (807)
T PRK13560 770 TLGLQLVCALVKQLDGEIALD------SR--GGARFNIRFPMS 804 (807)
T ss_pred CccHHHHHHHHHHcCCEEEEE------cC--CceEEEEEecCC
Confidence 344999999999999888764 43 578888888864
No 291
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=50.79 E-value=95 Score=36.33 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhcCCCccEEEEcc-CCCC-CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 118 TNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 118 ~dG~EALe~L~~~~~~~DLVLlDi-MP~m-dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.+..+-++.|.+ ...|+|++|. -..- .-++++++||.. ++++|||+ -.-...+....+.++||+.+-
T Consensus 224 ~~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 455555555554 5789999999 6433 346788899653 57888876 335667888899999998654
No 292
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.67 E-value=85 Score=37.01 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=62.5
Q ss_pred CccEEEEEecChhH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCccEEE--------------Ecc-C
Q 004541 86 RSLKVLLVENDDST----RHVVAALLRNCG--YEVTE--ATNGLQAWKILEDLTNHIDLVL--------------TEV-M 142 (746)
Q Consensus 86 ~~lrVLVVDDd~~~----r~~L~~lL~~~G--~~V~~--A~dG~EALe~L~~~~~~~DLVL--------------lDi-M 142 (746)
.++.+++||-.+-. .+.++.+=..++ ..|.. +.+.+.|.+++.. ..|.|. +++ .
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCc
Confidence 45677777743333 444444444454 44554 6777777777763 456664 444 5
Q ss_pred CCCCHHH-HHHHHHhc--cCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 143 PCLSGVA-LLSKIMSH--KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 143 P~mdGle-llr~IR~~--~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
|.++.+. +.+..+.. .....+|||+-.+-....++.+|+.+||+..+
T Consensus 330 ~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm 379 (502)
T PRK07107 330 GQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIM 379 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeee
Confidence 5444433 33322111 11234899999999999999999999999776
No 293
>PRK04457 spermidine synthase; Provisional
Probab=50.43 E-value=1.1e+02 Score=32.59 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=46.0
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CC-C----CCHHHHHHHHHhc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-C----LSGVALLSKIMSH 157 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G--~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP-~----mdGlellr~IR~~ 157 (746)
..+|.+||=|+.+.+..++.+...+ -++. ...|+.+.++.. ...||+||+|. -+ . +.-.++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4689999999999999998876432 3443 456777766533 35799999996 22 2 2234666666543
No 294
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=50.32 E-value=1.6e+02 Score=31.79 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=51.4
Q ss_pred cEEEEEecCh----hHHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 88 LKVLLVENDD----STRHVVAALLRN--CGYEVTE-------A-TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~----~~r~~L~~lL~~--~G~~V~~-------A-~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
.+|.||.++. ...+.+...|++ .|.+|+. . .|....+..++. ..+|+|++...+. +...+++.
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~--~~~d~v~~~~~~~-~~~~~~~~ 220 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA--SGADTVITGNWGN-DLLLLVKQ 220 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH--cCCCEEEEcccCc-hHHHHHHH
Confidence 4566665433 245667788888 8887752 1 455666777776 7899999976433 67889999
Q ss_pred HHhccCCCCccEEEEec
Q 004541 154 IMSHKTRKNLPVIMMSS 170 (746)
Q Consensus 154 IR~~~~~~~iPVI~LTa 170 (746)
+++.. .++|++..+.
T Consensus 221 ~~~~g--~~~~~~~~~~ 235 (342)
T cd06329 221 AADAG--LKLPFYTPYL 235 (342)
T ss_pred HHHcC--CCceEEeccc
Confidence 97654 3566665543
No 295
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=50.17 E-value=6.5 Score=24.17 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.3
Q ss_pred ceeccc
Q 004541 606 LTQHYD 611 (746)
Q Consensus 606 ~~~~~~ 611 (746)
|.+|||
T Consensus 6 fk~hhh 11 (16)
T PF08047_consen 6 FKHHHH 11 (16)
T ss_pred eccccc
Confidence 444433
No 296
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=49.93 E-value=37 Score=33.13 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhCCCEEE---EECCHHHHH-HHHHhcCC--CccEEEEcc
Q 004541 98 STRHVVAALLRNCGYEVT---EATNGLQAW-KILEDLTN--HIDLVLTEV 141 (746)
Q Consensus 98 ~~r~~L~~lL~~~G~~V~---~A~dG~EAL-e~L~~~~~--~~DLVLlDi 141 (746)
.+...|..+|+.+|+++. .+.|-.+.+ +.+++... .+|+||+-=
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittG 69 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTG 69 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 367789999999999876 345544444 34443323 689999864
No 297
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=49.92 E-value=2.9e+02 Score=31.66 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCccEEEEcc-C----CCCCHHHHHHHHHhccCCCCccEEEEecC
Q 004541 101 HVVAALLRNCGYEVTE----ATNGLQAWKILEDLTNHIDLVLTEV-M----PCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~----A~dG~EALe~L~~~~~~~DLVLlDi-M----P~mdGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
..+....++.|..+.. +.+..+.+..+.+ ...|.|.+.. - ....+++.++++++. ..+||++.-+-
T Consensus 97 ~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI 171 (430)
T PRK07028 97 EDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL 171 (430)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC
Confidence 3444555667877664 2233343343443 4577776553 2 224678888888753 34899887766
Q ss_pred CCHHHHHHHHhCCCCeE-----EeCCCCHHHHHHHHHHHHHHh
Q 004541 172 DSMGLVFKCLSKGAVDF-----LVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 172 ~~~~~~~~al~aGaddy-----L~KPi~~~eL~~~L~~vlrr~ 209 (746)
..+...+++.+|++.+ |.+.-++.+....+++.+++.
T Consensus 172 -~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 172 -DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 5677889999999955 555667777777777766653
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=49.90 E-value=97 Score=30.20 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred CccEEEEEecChhHH---HHHHHHHHhCCCEEEEEC---CHHHH----HHHHHhcCCCccEEEEccCCC--C--CHHHHH
Q 004541 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NGLQA----WKILEDLTNHIDLVLTEVMPC--L--SGVALL 151 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r---~~L~~lL~~~G~~V~~A~---dG~EA----Le~L~~~~~~~DLVLlDiMP~--m--dGlell 151 (746)
.+.+|++|+-|..-. ..+..+++..|..+.... +..+. ++.+.. ..+|+||+|.-+. . ..++.+
T Consensus 27 ~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt~g~~~~~~~~l~~l 104 (173)
T cd03115 27 KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDTAGRLQIDENLMEEL 104 (173)
T ss_pred CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEECcccchhhHHHHHHH
Confidence 356899999775432 234444455576666543 33332 233333 6799999998222 1 344444
Q ss_pred HHHHhccCCCCccEEEEecCCCH
Q 004541 152 SKIMSHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 152 r~IR~~~~~~~iPVI~LTa~~~~ 174 (746)
..+... ......++++.+....
T Consensus 105 ~~l~~~-~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 105 KKIKRV-VKPDEVLLVVDAMTGQ 126 (173)
T ss_pred HHHHhh-cCCCeEEEEEECCCCh
Confidence 444322 1244455666654433
No 299
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=49.88 E-value=1.3e+02 Score=33.37 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHH
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL 198 (746)
+.++..+++.. .|+.++=..|..-|+.+++.+. ..+|||. |... ...+.+..|..++|..|.++++|
T Consensus 290 ~~~~~~~~l~~----adv~v~~s~~e~~~~~llEAmA-----~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~l 356 (396)
T cd03818 290 PYDQYLALLQV----SDVHVYLTYPFVLSWSLLEAMA-----CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDAL 356 (396)
T ss_pred CHHHHHHHHHh----CcEEEEcCcccccchHHHHHHH-----CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHH
Confidence 34566666654 4665542256656677777773 4578876 3322 23455667888999999999999
Q ss_pred HHHHHHHHHH
Q 004541 199 KNLWQHVWRR 208 (746)
Q Consensus 199 ~~~L~~vlrr 208 (746)
.++|.+++..
T Consensus 357 a~~i~~ll~~ 366 (396)
T cd03818 357 AAAVIELLDD 366 (396)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 300
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=49.46 E-value=41 Score=35.35 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=56.3
Q ss_pred CccEEEEEecC-hhHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 86 RSLKVLLVEND-DSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 86 ~~lrVLVVDDd-~~~r~~L~~lL~~~G~~V~---~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
...+|=.|-.. ......|.+-|.++||.|. ..++...|.+++++..-+|-+++-|- |++.+|++. ..
T Consensus 38 ~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT--------s~ 109 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT--------SD 109 (262)
T ss_pred cCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC--------CC
Confidence 45567666643 4456677888889999987 57788888999988777888999998 999999743 24
Q ss_pred CCccEEEEe
Q 004541 161 KNLPVIMMS 169 (746)
Q Consensus 161 ~~iPVI~LT 169 (746)
++.-||-+.
T Consensus 110 pn~VVigla 118 (262)
T KOG3040|consen 110 PNCVVIGLA 118 (262)
T ss_pred CCeEEEecC
Confidence 666555443
No 301
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.45 E-value=1.4e+02 Score=34.70 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCccEEEEEecChhHHHHHHHHH----HhCCCEEEEEC---CH----HHHHHHHHhcCCCccEEEEcc
Q 004541 85 LRSLKVLLVENDDSTRHVVAALL----RNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL----~~~G~~V~~A~---dG----~EALe~L~~~~~~~DLVLlDi 141 (746)
..+.+|+||+-|..-. .....| +..+..+.... +. .++++.++. ..+|+||+|.
T Consensus 126 ~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDT 190 (429)
T TIGR01425 126 RKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDT 190 (429)
T ss_pred HCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 3467999999876432 333444 34455555433 32 245666655 5799999998
No 302
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=49.44 E-value=83 Score=33.35 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=62.4
Q ss_pred EEecChhHHHHHHHHHHhCCCEEE--EE---C--CHHHHHHHHHhcCCCccEEEEcc-CCCC--CHHHHHHHHHhccCCC
Q 004541 92 LVENDDSTRHVVAALLRNCGYEVT--EA---T--NGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRK 161 (746)
Q Consensus 92 VVDDd~~~r~~L~~lL~~~G~~V~--~A---~--dG~EALe~L~~~~~~~DLVLlDi-MP~m--dGlellr~IR~~~~~~ 161 (746)
+..|...+.++++.+- ..+.-|. .- . +..+..+.+.+ ...|.|.+|. .|+. --++++++|++. ..
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~--~~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEE--FN 190 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHh--cC
Confidence 3445555555555554 4444333 11 1 22244445555 6789899998 7764 248888888764 23
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.+|||..-+-.+.++..+++..|++.+.
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 5999999999999999999999999875
No 303
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=49.06 E-value=1.6e+02 Score=32.23 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=60.3
Q ss_pred EEEEEe--cChhH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 89 rVLVVD--Dd~~~---r~~L~~lL~~~G~~V~~A~dG~EALe~-------L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
+|+||- +.+.. ...+..+|+..|+++.........+.. .......+|+||+ -+-||. +++.+|.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 82 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV---LGGDGT-MLGIGRQ 82 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE---ECCcHH-HHHHHHH
Confidence 477773 33333 455666677789987765433222110 1111134677776 366773 4455543
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.. ..++||+-+. .|=.+||. .+.++++...|.++++.
T Consensus 83 ~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 83 LA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred hc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 22 3578988665 34457887 78899999999998764
No 304
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=48.90 E-value=2.5e+02 Score=31.07 Aligned_cols=101 Identities=14% Similarity=0.248 Sum_probs=60.5
Q ss_pred CccEEEEEec----ChhHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCccEEEEccCCC------------CC
Q 004541 86 RSLKVLLVEN----DDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (746)
Q Consensus 86 ~~lrVLVVDD----d~~~r~~L~~lL~~~G-~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~------------md 146 (746)
.+..+++||- .....+.++.+=+... ..|. .+.+.+.|..+++ ...|+|++-+-|+ ..
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~---aGaD~I~vg~g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID---AGADGVKVGIGPGSICTTRIVTGVGVP 181 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh---cCCCEEEECCCCCcCcccceeCCCCCC
Confidence 3567888773 2333343433333332 4554 4678888877775 4678887632121 11
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
-+.++..+.+......+|||.--+-....++.+++.+||+.+.
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vm 224 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVM 224 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 2333444432221236899987788888999999999999876
No 305
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=48.75 E-value=2.5e+02 Score=30.46 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc---C---CCCCHHHHHHHHHhccCCCCccEEEEecCC
Q 004541 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV---M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi---M---P~mdGlellr~IR~~~~~~~iPVI~LTa~~ 172 (746)
+.+..+-+.++.-|+ .+.+.++|..+.. ...|.|.+.- . .+...++++..+++.- ...+|||+-.+-.
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~ 237 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIR 237 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCC
Confidence 556666555554444 3467777765554 4678777643 1 2334577888776432 2369999999999
Q ss_pred CHHHHHHHHhCCCCeEEe-CCC
Q 004541 173 SMGLVFKCLSKGAVDFLV-KPI 193 (746)
Q Consensus 173 ~~~~~~~al~aGaddyL~-KPi 193 (746)
...++.+++..||+.+.. .|+
T Consensus 238 ~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 238 RGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred CHHHHHHHHHcCCCEEEEcHHH
Confidence 999999999999998644 454
No 306
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=48.70 E-value=1.7e+02 Score=32.30 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHhcCCCccEEEEcc
Q 004541 118 TNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 118 ~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
.|.+..++++++ ..+|+|+...
T Consensus 49 ~d~~~l~~~~~~--~~id~v~~~~ 70 (380)
T TIGR01142 49 LDGDALRAVIER--EKPDYIVPEI 70 (380)
T ss_pred CCHHHHHHHHHH--hCCCEEEecc
Confidence 455555556654 5688888654
No 307
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=48.54 E-value=1.5e+02 Score=30.89 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHH
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L 202 (746)
-+.++++++|++. ++++.|- .-.-.+.+...++.++|++ ||.-|..-.++.+..
T Consensus 44 ~~a~~~i~~l~~~--~~~~~vG-AGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 44 PVALDAIRLLRKE--VPDALIG-AGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELAKHA 97 (204)
T ss_pred ccHHHHHHHHHHH--CCCCEEE-EEeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 3466677777643 3444332 3334456677788888876 777776655554443
No 308
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.37 E-value=1.7e+02 Score=32.14 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=58.8
Q ss_pred EEEEEe--cChhH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCccEEEEccCCCCCHHHH
Q 004541 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------------LEDLTNHIDLVLTEVMPCLSGVAL 150 (746)
Q Consensus 89 rVLVVD--Dd~~~---r~~L~~lL~~~G~~V~~A~dG~EALe~-------------L~~~~~~~DLVLlDiMP~mdGlel 150 (746)
+|.||- +.+.. ...+..+|+..|+++.........+.. .......+|+||+ -+-||. +
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---lGGDGT-~ 77 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---IGGDGT-F 77 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---ECCcHH-H
Confidence 566662 22333 455666777889988875543332210 0111124566665 366773 3
Q ss_pred HHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 151 LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 151 lr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
++..|... ...+||+-+-. |-.+||. .++++++..+|.+++...
T Consensus 78 L~aa~~~~-~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 78 LRTATYVG-NSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHhc-CCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 44444322 34789987653 3355664 588899999999988753
No 309
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.15 E-value=81 Score=33.02 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCccEEEEcc-CCCCCH-------HHHHHHHHhccC--CCCccEEE
Q 004541 101 HVVAALLRNCGYEVTEATN---GLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVIM 167 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~A~d---G~EALe~L~~~~~~~DLVLlDi-MP~mdG-------lellr~IR~~~~--~~~iPVI~ 167 (746)
..+-..++..|+.+-.|-+ ..+.++.+. ...|+||+=. -|+..| ++-++++|+... ..++||.+
T Consensus 96 ~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v 172 (220)
T PRK08883 96 DRTLQLIKEHGCQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI 172 (220)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE
Confidence 3455667778887765543 344444333 3578887745 787665 445555554321 22467666
Q ss_pred EecCCCHHHHHHHHhCCCCeEE-----eCCCCHHHHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVW 206 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL-----~KPi~~~eL~~~L~~vl 206 (746)
.-+ -..+.+.++.++||+.++ .+.-++.+....++..+
T Consensus 173 dGG-I~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 173 DGG-VKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred ECC-CCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 444 457888899999999764 44334555444454444
No 310
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=47.71 E-value=1.5e+02 Score=32.49 Aligned_cols=89 Identities=13% Similarity=-0.016 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCC--E-EEEECC----HHHHHHHHHhcCCCccEEEEccCCC--CCHHHHHHHHHhcc--C-CCCccEE
Q 004541 99 TRHVVAALLRNCGY--E-VTEATN----GLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSHK--T-RKNLPVI 166 (746)
Q Consensus 99 ~r~~L~~lL~~~G~--~-V~~A~d----G~EALe~L~~~~~~~DLVLlDiMP~--mdGlellr~IR~~~--~-~~~iPVI 166 (746)
+...+..+-+.+.. . ++.+++ ..+|++.++.....+|+|.+|-|.. -+..++++++++.- . .+++ .|
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~~~~-~i 248 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYKHV-KI 248 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCe-EE
Confidence 34455555555542 2 223444 4478888765334689999998742 22445555554321 1 2344 47
Q ss_pred EEecCCCHHHHHHHHhCCCCeE
Q 004541 167 MMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 167 ~LTa~~~~~~~~~al~aGaddy 188 (746)
.+|+.-..+.+.+....|+|-|
T Consensus 249 eaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 249 FVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred EEeCCCCHHHHHHHHHcCCCEE
Confidence 7788888899999999996644
No 311
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.62 E-value=1.8e+02 Score=32.08 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=60.2
Q ss_pred EEEEEec--Chh---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCccEEEEccCCCCCH
Q 004541 89 KVLLVEN--DDS---TRHVVAALLRNCGYEVTEATNGLQAWKI----------------LEDLTNHIDLVLTEVMPCLSG 147 (746)
Q Consensus 89 rVLVVDD--d~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~----------------L~~~~~~~DLVLlDiMP~mdG 147 (746)
+|+||-. .+. ....|..+|+..|++|.........+.. .......+|+||+ -+-||
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDG 83 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV---LGGDG 83 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---EcCCH
Confidence 5888733 233 3456666777889988876543332210 0110123566655 36677
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
. +++..|... ...+||+-+-. |=.+||.- +.++++..+|.++++..
T Consensus 84 T-~L~aar~~~-~~~~PilGIN~-------------G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 84 T-ILRAAELAR-AADVPVLGVNL-------------GHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred H-HHHHHHHhc-cCCCcEEEEec-------------CCCceecc-CCHHHHHHHHHHHHcCC
Confidence 2 334443222 35789987653 55678865 77899999999998753
No 312
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=47.57 E-value=1.9e+02 Score=30.64 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=36.7
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
..+|..||-++......+.-++..+.++.. .|..+.+..... ..||+||+|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECC
Confidence 458999999999999998888877765543 344443321111 4699999985
No 313
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.33 E-value=1.2e+02 Score=32.92 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=45.4
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
.+.+.+|+.+.+. ..+|+|++|.| +.+.++++.+.. .+++||++. +--..+.+.++...|+|.+-
T Consensus 195 Ev~tleea~eA~~---~gaD~I~LD~~----~~e~l~~~v~~~-~~~i~leAs-GGIt~~ni~~~a~tGvD~Is 259 (277)
T PRK05742 195 EVESLDELRQALA---AGADIVMLDEL----SLDDMREAVRLT-AGRAKLEAS-GGINESTLRVIAETGVDYIS 259 (277)
T ss_pred EeCCHHHHHHHHH---cCCCEEEECCC----CHHHHHHHHHHh-CCCCcEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 7899999999886 46899999874 344455443321 246776654 44567788899999988654
No 314
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=47.22 E-value=1.9e+02 Score=30.98 Aligned_cols=100 Identities=11% Similarity=0.113 Sum_probs=59.3
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEE-EE-C-CHHHHHHHHHhcCCCccEEEEcc-CCCC------CHHHHHHHHHhccC
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVT-EA-T-NGLQAWKILEDLTNHIDLVLTEV-MPCL------SGVALLSKIMSHKT 159 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~-~A-~-dG~EALe~L~~~~~~~DLVLlDi-MP~m------dGlellr~IR~~~~ 159 (746)
|+|.|-.......+...++..|.... .+ . +..+-++.+.+....|.+++.=. -.+. +-.+.+++||+.
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~-- 196 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAY-- 196 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh--
Confidence 45555444455667777788887744 22 2 33444444444333465554422 2221 235677777654
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP 192 (746)
..+||++=-+-...+.+.++.+.|||.++.--
T Consensus 197 -~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 197 -SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 35687764555568899999999999998764
No 315
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=47.20 E-value=2e+02 Score=31.13 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCC
Q 004541 99 TRHVVAALLRNCGY---EVTEA---TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 99 ~r~~L~~lL~~~G~---~V~~A---~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~ 172 (746)
....++.++..++. .|+.. -+.++..+++.. .|++|+=...+.-|+.+++.+. ..+|||+. ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~~e~~g~~~lEA~a-----~G~PvI~s-~~~ 313 (388)
T TIGR02149 244 VAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSIYEPLGIVNLEAMA-----CGTPVVAS-ATG 313 (388)
T ss_pred HHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCccCCCChHHHHHHH-----cCCCEEEe-CCC
Confidence 34455555554433 13322 245556666643 5666653322334666777762 46888763 332
Q ss_pred CHHHHHHHHhCCCCeEEeCCCCH------HHHHHHHHHHHH
Q 004541 173 SMGLVFKCLSKGAVDFLVKPIRK------NELKNLWQHVWR 207 (746)
Q Consensus 173 ~~~~~~~al~aGaddyL~KPi~~------~eL~~~L~~vlr 207 (746)
...+.+..+..+++.+|-+. ++|.+.|.+++.
T Consensus 314 ---~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 314 ---GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred ---CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 23455667778999999888 888888887764
No 316
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=47.18 E-value=77 Score=35.70 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCccEEEEcc-CC-CCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDi-MP-~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+..+-++.|.+ ...|+|++|. -- -..-++.+++||+. ++++||| .-.-...+.....+++|||.+.+=
T Consensus 108 ~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~--~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKK--FPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHH--STTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHh--CCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 45566666665 5789999998 32 22347888999765 4678776 444566788888999999977654
No 317
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=47.06 E-value=2.4e+02 Score=32.68 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=32.3
Q ss_pred CccEEEEEecChhH---HHHHHHHHHhCCCEEEEEC---CHHHHH-HHHHhcCCCccEEEEcc
Q 004541 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEAT---NGLQAW-KILEDLTNHIDLVLTEV 141 (746)
Q Consensus 86 ~~lrVLVVDDd~~~---r~~L~~lL~~~G~~V~~A~---dG~EAL-e~L~~~~~~~DLVLlDi 141 (746)
.+.+|+||+-|..- .+.+..+....|..+.... +..+.+ +.+... ..+|+||+|.
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~-~~~DvVIIDT 183 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF-KKADVIIVDT 183 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh-hcCCEEEEEC
Confidence 46799999987642 3345555566677666443 333222 223221 2359999998
No 318
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=46.99 E-value=1.1e+02 Score=34.29 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=51.7
Q ss_pred ccEEEEEecChhH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHH
Q 004541 87 SLKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLS 152 (746)
Q Consensus 87 ~lrVLVVDDd~~~-----r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr 152 (746)
..|+|||-|.... ...+...|+..|+++..+. +..++++.++. ..+|+||- +-+.+-+++.+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK 103 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE--EKVDFILA--VGGGSVIDSAK 103 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCChHHHHHHH
Confidence 3589999776443 3568888888888776543 35567778877 78999885 44545555555
Q ss_pred HHHhc---------------cCCCCccEEEEec
Q 004541 153 KIMSH---------------KTRKNLPVIMMSS 170 (746)
Q Consensus 153 ~IR~~---------------~~~~~iPVI~LTa 170 (746)
.+.-. ...+.+|+|++..
T Consensus 104 ~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 104 AIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 54221 0124589888854
No 319
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=46.61 E-value=2e+02 Score=31.36 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCCCCccEEEEec-CCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa-~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
|+-+++.+. ..+|||. |. ... ..+....|..++|..|-+.++|.++|..++...
T Consensus 271 ~~~~lEAma-----~G~Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 271 PMTLLEAMS-----YGIPCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred ChHHHHHHH-----cCCCEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 677777773 4588875 33 222 335667788999999999999999999987654
No 320
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.40 E-value=1.6e+02 Score=32.36 Aligned_cols=101 Identities=25% Similarity=0.314 Sum_probs=59.4
Q ss_pred EEEEEe--cCh---hHHHHHHHHHHhCCCEEEEECCHHHHHH-----HH--HhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 89 KVLLVE--NDD---STRHVVAALLRNCGYEVTEATNGLQAWK-----IL--EDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 89 rVLVVD--Dd~---~~r~~L~~lL~~~G~~V~~A~dG~EALe-----~L--~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
+|+||- +.+ .....+..+|+..|+++.......+.+. .. ......+|+||+ -+-||. +++.++.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 81 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV---VGGDGS-LLGAARA 81 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE---EeCcHH-HHHHHHH
Confidence 577773 223 3445566667788998886553322211 10 111134677766 356773 3333332
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
. ...++||+-+-. |=.+|| -.++++++..+|.+++..
T Consensus 82 ~-~~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 82 L-ARHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred h-cCCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcC
Confidence 2 236789887654 445677 578899999999999864
No 321
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.32 E-value=44 Score=37.85 Aligned_cols=113 Identities=11% Similarity=0.140 Sum_probs=62.7
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~-V~-~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPV 165 (746)
-+|+.+|-++...+.++.-++..+.+ +. ...|....+... ...||+|++|- ++.. .+++..+-+. ...--+
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP-fGs~-~~fld~al~~--~~~~gl 142 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP-FGTP-APFVDSAIQA--SAERGL 142 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC-CCCc-HHHHHHHHHh--cccCCE
Confidence 47999999999999999998877654 33 333444444332 35799999997 3321 1333333111 122347
Q ss_pred EEEecCCCHHH----HHHHH-hCCCCeEEeCCCCH-HHHHHHHHHHHHH
Q 004541 166 IMMSSLDSMGL----VFKCL-SKGAVDFLVKPIRK-NELKNLWQHVWRR 208 (746)
Q Consensus 166 I~LTa~~~~~~----~~~al-~aGaddyL~KPi~~-~eL~~~L~~vlrr 208 (746)
|.+|+.+.... ...|+ ..|+.. +.-|+.. .-|+-+|..+.+.
T Consensus 143 L~vTaTD~~~L~G~~~~~~~rkYga~~-~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 143 LLVTATDTSALCGNYPKSCLRKYGANP-VKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEEecccHHhcCCChHHHHHHhCCcc-cCCcchHHHHHHHHHHHHHHH
Confidence 88887665543 34454 345432 2224333 2344444444443
No 322
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=46.23 E-value=1.4e+02 Score=33.79 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=44.5
Q ss_pred cEEEEEecChh----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~----~r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.++|||-|... ....+...|+..|..+..+. +.+++++.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~--~~~D~Iia--iGGGS~iD~AK~i 107 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE--NNCDSVIS--LGGGSPHDCAKGI 107 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH--cCCCEEEE--eCCchHHHHHHHH
Confidence 58999988633 34568888888887665443 45677888877 78999885 4555556666655
Q ss_pred H
Q 004541 155 M 155 (746)
Q Consensus 155 R 155 (746)
.
T Consensus 108 a 108 (383)
T PRK09860 108 A 108 (383)
T ss_pred H
Confidence 3
No 323
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=46.12 E-value=3.1e+02 Score=30.86 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=68.7
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHhcCCCccEEEEcc-C-C--CCCH--HHHHHHHHh
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEA--TNGLQAWKILEDLTNHIDLVLTEV-M-P--CLSG--VALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A--~dG~EALe~L~~~~~~~DLVLlDi-M-P--~mdG--lellr~IR~ 156 (746)
.++++||-+-+. +..+..+++..|. .|... -+-++..+++.. .|+.|+=. . + ++.| .-+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 467777776654 4566677776664 24332 244566666654 56666543 2 1 1244 45667762
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||.. ... ...+.+..|..+||..|-+.++|.++|.+++.
T Consensus 327 ----~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 45888763 322 23456777889999999999999999999876
No 324
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=46.11 E-value=1.9e+02 Score=30.86 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=51.7
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC---EEE--EEC---CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY---EVT--EAT---NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~---~V~--~A~---dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
.+|.|+-++......+..+|+..+. .|. ... +....|..++. ..+|+||+... ..+...+++++++...
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~--~~~d~vv~~~~-~~~~~~~~~qa~~~g~ 206 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKN--SGDNRIIIDCS-ADILIELLKQAQQVGM 206 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHh--cCceEEEEECC-HHHHHHHHHHHHHhCc
Confidence 4666666666567778888887764 333 222 45667777776 67899998662 2346778888876554
Q ss_pred CCCccEEEEecCCC
Q 004541 160 RKNLPVIMMSSLDS 173 (746)
Q Consensus 160 ~~~iPVI~LTa~~~ 173 (746)
.....+.+++....
T Consensus 207 ~~~~~~~i~~~~~~ 220 (327)
T cd06382 207 MSEYYHYIITNLDL 220 (327)
T ss_pred cccceEEEEecCCc
Confidence 43334445555433
No 325
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.07 E-value=2.7e+02 Score=29.06 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=53.4
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCccEEEE------------------cc--CCC
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTE----ATNGLQAWKILEDLTNHIDLVLT------------------EV--MPC 144 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~----A~dG~EALe~L~~~~~~~DLVLl------------------Di--MP~ 144 (746)
-.+|..+++.....+.+.|...|++++. ...+.++++.+++ ..++++|- |+ .|+
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~--~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK--EVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH--HCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 3344456666666666666677876653 3366667777765 34566552 32 366
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP 192 (746)
++- ++++.-++. .+| ++-+-..+..+.+++++|++-+-.-|
T Consensus 96 ~~~-~vi~~a~~~----~i~--~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 96 LTP-PLLKAAQEG----PIP--LIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCH-HHHHHHHHc----CCC--EeCCCCCHHHHHHHHHCCCCEEEEcc
Confidence 665 666655432 233 33344444556777777777544444
No 326
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=45.91 E-value=1.3e+02 Score=32.36 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=66.0
Q ss_pred cChhHHHHHHHHHHhC-CCEEE------EECCHHHHHHHHHhcCCCccEEEEcc-CC-CCCHHHHHHHHHhccCCCCccE
Q 004541 95 NDDSTRHVVAALLRNC-GYEVT------EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 95 Dd~~~r~~L~~lL~~~-G~~V~------~A~dG~EALe~L~~~~~~~DLVLlDi-MP-~mdGlellr~IR~~~~~~~iPV 165 (746)
|.......++.+++.. ++.++ .+.|..+||+.|.+ ..+|=||+-= -+ -.+|++.++.|.+.. .. .+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~--lG~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~ 172 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLAD--LGVARILTSGQQQDAEQGLSLIMELIAAS--DG-PI 172 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHH--cCCCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CE
Confidence 5566777888888765 45554 45689999999988 5799999886 44 578999999996543 22 34
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEE
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL 189 (746)
||.-+--..+.+.+....|+..|-
T Consensus 173 Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 173 IMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEe
Confidence 777776667777777788888765
No 327
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=45.87 E-value=1.1e+02 Score=32.65 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=67.0
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHH
Q 004541 102 VVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 102 ~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~ 178 (746)
.++.-|+.--..+- ..-.-.=..|++.. ..||.+++|. =-..|.-.++..|+.....+..|||=+.. .....+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHH
Confidence 35556654322332 22222334577765 7899999999 66678888899998877777788876554 4567889
Q ss_pred HHHhCCCCeEEeCCCCHHHHHHHH
Q 004541 179 KCLSKGAVDFLVKPIRKNELKNLW 202 (746)
Q Consensus 179 ~al~aGaddyL~KPi~~~eL~~~L 202 (746)
+.|+.||..+|.-=|+-.|=.+.+
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~ 107 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQA 107 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHH
Confidence 999999999998777654433333
No 328
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=45.73 E-value=1e+02 Score=36.66 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=51.0
Q ss_pred CCCCchhhHHHHHHHHHhc--------------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceE-EEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQA--------------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEG-AVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs-~ftv~lpl~ 66 (746)
.|+|+|.. ...+.+.|.. .+.....+++..++++++|. .+.+.|..+.++ .|++.+++.
T Consensus 80 ~DNG~GIp-~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~-----~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 80 EDNGPGIP-PEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGK-----PVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred EcCCCCCC-HHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCC-----cEEEEEecCCCceEEEEEEEec
Confidence 47899886 3355555422 11223378888888888765 344456655554 555555543
Q ss_pred CCCCCCccccchhhhccCCCccEEEEEecChhH--HHHHHHHHHhC
Q 004541 67 MPQEQPQGAMVCWERFLHLRSLKVLLVENDDST--RHVVAALLRNC 110 (746)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lrVLVVDDd~~~--r~~L~~lL~~~ 110 (746)
.....+..............+.+|.|.-+.... +..+..+|++.
T Consensus 154 ~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~~~~~~~~~I~e~i~r~ 199 (535)
T PRK04184 154 TKKNEPIILEREEVDWDRWHGTRVELEIEGDWYRAKQRIYEYLKRT 199 (535)
T ss_pred ccccCCeeccccccCCCCCCCEEEEEEECCcChhhHHHHHHHHHHH
Confidence 221111000000000112345666665444333 46666766654
No 329
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=45.72 E-value=67 Score=30.52 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHHhcCCCccEEEEcc
Q 004541 97 DSTRHVVAALLRNCGYEVTE---ATNGLQAW-KILEDLTNHIDLVLTEV 141 (746)
Q Consensus 97 ~~~r~~L~~lL~~~G~~V~~---A~dG~EAL-e~L~~~~~~~DLVLlDi 141 (746)
..+...|..+|+.+|+++.. +.|-.+++ +.+++.-..+||||+==
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittG 66 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTG 66 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECC
Confidence 34677899999999998763 34444433 34443323589999864
No 330
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=45.67 E-value=2.3e+02 Score=31.91 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--CCCCC-HHHHHHHHHhc----cC-CCCccEEEEe
Q 004541 99 TRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSH----KT-RKNLPVIMMS 169 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--MP~md-Glellr~IR~~----~~-~~~iPVI~LT 169 (746)
.+..|..+-+.+|+++. .+.+.+|+-..+.. ...+||=+.- |-... -++.+.+|... .. ..++-+|.-|
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~--~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsES 295 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVHDEREMDRVLGI--EGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGES 295 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECC
Confidence 34555566667899877 79999998777753 2467776665 54322 25556666431 11 1344456668
Q ss_pred cCCCHHHHHHHHhCCCCeEEe
Q 004541 170 SLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 170 a~~~~~~~~~al~aGaddyL~ 190 (746)
+-...+++.++..+|++.+|+
T Consensus 296 GI~t~~Dv~~l~~~GadAvLV 316 (338)
T PLN02460 296 GLFTPDDVAYVQNAGVKAVLV 316 (338)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 888899999999999999987
No 331
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=45.63 E-value=41 Score=39.78 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=54.5
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCccEEEEcc---CCCCCHHHHHHHHHhccCCCCcc
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~-V~~A~dG~EALe~L~~~~~~~DLVLlDi---MP~mdGlellr~IR~~~~~~~iP 164 (746)
+|||||....+-..|..+|++.|+. |........-++.+.. ..||.||+-- -|..++.. ++.|+.. ...+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~p~~~~~~-~~li~~~--~~~~P 75 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGRPEEAGIS-VEVIRHF--SGKVP 75 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCChhhCCcc-HHHHHHh--hcCCC
Confidence 4999999999999999999999985 6655322212444443 4688888754 23333432 2333321 24689
Q ss_pred EEEEecCCCHHHHHHHHhCCCC
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGad 186 (746)
|+-+.- +...-+...|..
T Consensus 76 vLGICl----G~QlLa~a~Gg~ 93 (534)
T PRK14607 76 ILGVCL----GHQAIGYAFGGK 93 (534)
T ss_pred EEEEcH----HHHHHHHHcCCe
Confidence 987764 333334445543
No 332
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.50 E-value=1.5e+02 Score=32.47 Aligned_cols=91 Identities=16% Similarity=0.041 Sum_probs=58.3
Q ss_pred EEEEEecChhHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAALL----RNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL----~~~G~--~V-~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~ 161 (746)
.|||-|.+-...-.+...+ +...+ .+ +.+.+.+||.+.+. ..+|+|++|-|+--+--++++.++ .
T Consensus 166 ~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~---~gaDiI~LDn~s~e~l~~av~~~~-----~ 237 (281)
T PRK06106 166 AVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE---LGVDAVLLDNMTPDTLREAVAIVA-----G 237 (281)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHhC-----C
Confidence 3666665544332233333 33342 33 47999999999996 478999999854333333444332 2
Q ss_pred CccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 162 ~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
.. +|..|+.-..+.+.+....|+|-+
T Consensus 238 ~~-~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 238 RA-ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred Cc-eEEEECCCCHHHHHHHHhcCCCEE
Confidence 23 378898889999999999998744
No 333
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.45 E-value=76 Score=32.71 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=36.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLT 139 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLl 139 (746)
++|.|||----+...+...|+..|+ ++....+.+++ ..+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 5899999888888999999999999 78888776662 35888887
No 334
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.37 E-value=1.8e+02 Score=30.67 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=55.3
Q ss_pred hCCCEEEEECCH--------HHHH-HHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHH
Q 004541 109 NCGYEVTEATNG--------LQAW-KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 109 ~~G~~V~~A~dG--------~EAL-e~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~ 178 (746)
+.+.+|..+.+| +.|. +++++ ..+|+||+=- -|..-|-.-.|.|.+. .++|.|+++.........
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~--~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkd 103 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEE--FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKD 103 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccchhHH
Confidence 346777666544 2233 34555 7899999987 8888898888888543 578999998876666666
Q ss_pred HHHhCCCCeEEeCC
Q 004541 179 KCLSKGAVDFLVKP 192 (746)
Q Consensus 179 ~al~aGaddyL~KP 192 (746)
+.-+.|+-.+|.|+
T Consensus 104 eleeqGlGYIivk~ 117 (277)
T COG1927 104 ELEEQGLGYIIVKA 117 (277)
T ss_pred HHHhcCCeEEEecC
Confidence 66777766666665
No 335
>PLN02775 Probable dihydrodipicolinate reductase
Probab=45.29 E-value=3e+02 Score=30.20 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhC-CCCeEEeCCCCH
Q 004541 118 TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLVKPIRK 195 (746)
Q Consensus 118 ~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~a-GaddyL~KPi~~ 195 (746)
.+.+++|..+.. ..+|+|++|+ .|.. -++.++...+ ..+|+|+=|.--..+.+.+..+. ++--++.-.|.+
T Consensus 66 ~dl~~~l~~~~~--~~~~~VvIDFT~P~a-~~~~~~~~~~----~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKA--EYPNLIVVDYTLPDA-VNDNAELYCK----NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhc--cCCCEEEEECCChHH-HHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 666667755554 5799999999 8873 2444454433 24666665544444444443333 544455555554
No 336
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.26 E-value=66 Score=32.24 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=48.5
Q ss_pred HHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCccEEEEcc-CCCCCH-------HHHHHHHHhccC--CCCccEEEEec
Q 004541 104 AALLRNCGYEVT-EAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVIMMSS 170 (746)
Q Consensus 104 ~~lL~~~G~~V~-~A~--dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-------lellr~IR~~~~--~~~iPVI~LTa 170 (746)
...++..|..+. .+. +..+.++.+.. ..|.|+++. .|+.+| ++.++++|+... ..++||++.-+
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG 174 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG 174 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh---hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 444445566544 222 23454554443 368888887 666544 345555544321 12478766555
Q ss_pred CCCHHHHHHHHhCCCCeEEe
Q 004541 171 LDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 171 ~~~~~~~~~al~aGaddyL~ 190 (746)
-. .+.+.+++..|++.++.
T Consensus 175 I~-~env~~~~~~gad~iiv 193 (211)
T cd00429 175 IN-LETIPLLAEAGADVLVA 193 (211)
T ss_pred CC-HHHHHHHHHcCCCEEEE
Confidence 44 57888999999998764
No 337
>PRK07206 hypothetical protein; Provisional
Probab=44.97 E-value=2.9e+02 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=15.4
Q ss_pred eEEeCCC------------CHHHHHHHHHHHHH
Q 004541 187 DFLVKPI------------RKNELKNLWQHVWR 207 (746)
Q Consensus 187 dyL~KPi------------~~~eL~~~L~~vlr 207 (746)
-+++||. +.++|...+.+++.
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~ 180 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILG 180 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 6789996 45678877777654
No 338
>PLN02591 tryptophan synthase
Probab=44.96 E-value=1.9e+02 Score=30.93 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=65.4
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEE-EE-CCH-HHHHHHHHhcCCCccEEEEccCCCCC---------HHHHHHHHHh
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EA-TNG-LQAWKILEDLTNHIDLVLTEVMPCLS---------GVALLSKIMS 156 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~-~A-~dG-~EALe~L~~~~~~~DLVLlDiMP~md---------Glellr~IR~ 156 (746)
-|||+|-...-...+...++..|+..+ .+ .+- ++=++.+......| |-+=-+.+.. -.+++++||+
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gF--IY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGF--VYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCc--EEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 477777777777788888888998766 33 333 44455555433333 3220022222 2455777765
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP 192 (746)
. .++||++=.+-...+.+.+++..|||++++--
T Consensus 187 ~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 V---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred c---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 3 57999987888888999999999999998764
No 339
>PLN02366 spermidine synthase
Probab=44.89 E-value=1.3e+02 Score=33.05 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=44.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCC-----HHHHHHHHH
Q 004541 88 LKVLLVENDDSTRHVVAALLRNC--G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~--G---~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~md-----Glellr~IR 155 (746)
.+|-+||=|+.+.+..+..|... + -+|. ...|+.+.++... ...||+||+|. -|..- ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 58999999999999988888653 1 2344 4566666665432 25799999998 65422 224555554
Q ss_pred h
Q 004541 156 S 156 (746)
Q Consensus 156 ~ 156 (746)
.
T Consensus 194 ~ 194 (308)
T PLN02366 194 R 194 (308)
T ss_pred H
Confidence 3
No 340
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=44.81 E-value=1.5e+02 Score=33.11 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCEEEE--EC-----CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhcc
Q 004541 101 HVVAALLRNCGYEVTE--AT-----NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~--A~-----dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~ 158 (746)
+.+.+.++..|.+|.. +. +....|..++. ..+|.||+|+.+. ....+++++++..
T Consensus 141 q~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~--~~~~~iil~~~~~-~~~~il~qa~~~g 202 (371)
T cd06388 141 QAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDR--RQEKKFVIDCEIE-RLQNILEQIVSVG 202 (371)
T ss_pred HHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcc--cccEEEEEECCHH-HHHHHHHHHHhcC
Confidence 3444444555877653 22 33344555554 6789999998443 3578888887654
No 341
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=44.76 E-value=1.9e+02 Score=31.12 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--CCCCC-HHHHHHHHHhccCCCCccEEEEecCCCHHH
Q 004541 101 HVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--MP~md-Glellr~IR~~~~~~~iPVI~LTa~~~~~~ 176 (746)
..|..+-+.+|.++. .+.+.+|+-..+. ...+||=+.. +-.+. -++.+.+|...- ..++.+|.-++-...++
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~---~~a~iiGINnRdL~tf~vd~~~~~~l~~~i-p~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALE---AGADIIGINNRDLKTFEVDLNRTEELAPLI-PKDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHH---TT-SEEEEESBCTTTCCBHTHHHHHHHCHS-HTTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHH---cCCCEEEEeCccccCcccChHHHHHHHhhC-ccceeEEeecCCCCHHH
Confidence 456666667899877 7999999877775 3567777665 54432 345555554321 24577888899999999
Q ss_pred HHHHHhCCCCeEEeC
Q 004541 177 VFKCLSKGAVDFLVK 191 (746)
Q Consensus 177 ~~~al~aGaddyL~K 191 (746)
+.++...|++++|.-
T Consensus 224 ~~~l~~~G~davLVG 238 (254)
T PF00218_consen 224 ARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHCTTT-SEEEES
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999974
No 342
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=44.74 E-value=63 Score=30.58 Aligned_cols=45 Identities=31% Similarity=0.321 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhCCCEEE---EE-CCHHHHHHHHHhcCCCccEEEEcc
Q 004541 97 DSTRHVVAALLRNCGYEVT---EA-TNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 97 ~~~r~~L~~lL~~~G~~V~---~A-~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
..+...|.++|+.+|+++. .+ .+.++..+.+++....+||||+==
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittG 65 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTG 65 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcC
Confidence 4466789999999998765 23 344433344443223578888753
No 343
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.73 E-value=1.6e+02 Score=30.69 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=14.3
Q ss_pred CCHHHHHHHHhCCCCeEEeCCCCHHHHHH
Q 004541 172 DSMGLVFKCLSKGAVDFLVKPIRKNELKN 200 (746)
Q Consensus 172 ~~~~~~~~al~aGaddyL~KPi~~~eL~~ 200 (746)
-+.+...++.++|+. ||.-|.--.++.+
T Consensus 64 l~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 64 LNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred cCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 344555555666644 5555554444443
No 344
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=44.67 E-value=33 Score=38.24 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCCchhhHHHHHHHHHhc-----------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecC
Q 004541 2 NVDGKADKRLQELNHCLQA-----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~-----------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~ 66 (746)
.|+|.|.. ...+.+.+.. .+......|++++++.++|. +.+.|.++.|+.|.+.+|..
T Consensus 406 ~D~G~Gi~-~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~~~~G~------i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 406 EDQGPGIP-DYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGE------VTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred EECCCCCC-HHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHCCCE------EEEEEcCCCeEEEEEEeeCC
Confidence 47899875 3355555522 12234488999999988775 55567778899999988753
No 345
>PLN00191 enolase
Probab=44.38 E-value=1.5e+02 Score=34.63 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=72.4
Q ss_pred EecChhHHHHHHHHHHhCCCE--EE-----------------E------------ECCHHHHHHHHHhcCCCccEEEEcc
Q 004541 93 VENDDSTRHVVAALLRNCGYE--VT-----------------E------------ATNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 93 VDDd~~~r~~L~~lL~~~G~~--V~-----------------~------------A~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
++++...+++|.+.++..||+ |. . .-+.++++++++.....|+|+.+.-
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 577888889999999877764 11 0 1278889998887656688888887
Q ss_pred -CCCCCHHHHHHHHHhccCCCCccEEEEec-CCCHHHHHHHHhCCC-CeEEeCCCCHHHHHHHHHH
Q 004541 142 -MPCLSGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGA-VDFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 142 -MP~mdGlellr~IR~~~~~~~iPVI~LTa-~~~~~~~~~al~aGa-ddyL~KPi~~~eL~~~L~~ 204 (746)
++..| ++-.++|++. ..+||+.==. ........++++.++ +.++.||-..--|..+++.
T Consensus 319 Pl~~~D-~eg~~~Lt~~---~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~ 380 (457)
T PLN00191 319 PFDQDD-WEHWAKLTSL---EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEA 380 (457)
T ss_pred CCCccc-HHHHHHHHcc---CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 76543 5556667644 3466543111 134677778887775 5678999877666666653
No 346
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=44.32 E-value=1.7e+02 Score=30.20 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=55.0
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHH
Q 004541 104 AALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 181 (746)
Q Consensus 104 ~~lL~~~G~-~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al 181 (746)
..+|+..+. -|+...+.+++++.++.. ..-.+=++.+ |-.-++++.++.|++.. +..-+|-.-.-...+....++
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHH
Confidence 344554443 333455666666655432 1122335556 66667888888886542 221123333344567888999
Q ss_pred hCCCCeEEeCCCCHHHHHHHHH
Q 004541 182 SKGAVDFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 182 ~aGaddyL~KPi~~~eL~~~L~ 203 (746)
++|++ |+.-|..-.++....+
T Consensus 81 ~aGA~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 81 DAGGR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred HcCCC-EEECCCCCHHHHHHHH
Confidence 99986 7777876666655544
No 347
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.26 E-value=1.6e+02 Score=29.33 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCC-------CHHHHHHHHHhccCCCCccEEEEecCCCH
Q 004541 103 VAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-------SGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 103 L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~m-------dGlellr~IR~~~~~~~iPVI~LTa~~~~ 174 (746)
.+.+|....+--..+.+.+|+.+..+ ..+|.|++-. .|-. -|++.++++++. ..+||++|-+-. .
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv~AlGGI~-~ 160 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPVYALGGIT-P 160 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCEEEESS---T
T ss_pred hhhhcccceEEEeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCEEEEcCCC-H
Confidence 44455443333347899999666554 4678899886 4432 388888888754 349999998875 4
Q ss_pred HHHHHHHhCCCCeEE
Q 004541 175 GLVFKCLSKGAVDFL 189 (746)
Q Consensus 175 ~~~~~al~aGaddyL 189 (746)
+.+.++++.|++++-
T Consensus 161 ~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 161 ENIPELREAGADGVA 175 (180)
T ss_dssp TTHHHHHHTT-SEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 567789999998764
No 348
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=43.84 E-value=2.3e+02 Score=31.75 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred cCCCccEEEEEecChhHHHHHHHHHHhCCCEEEEEC--------CH---HHHHHHHHhcCCCccEEEEccCCCCCHHHH-
Q 004541 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT--------NG---LQAWKILEDLTNHIDLVLTEVMPCLSGVAL- 150 (746)
Q Consensus 83 ~~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~--------dG---~EALe~L~~~~~~~DLVLlDiMP~mdGlel- 150 (746)
.++.+.+|||--.. -...+...|+.+|++++.+. +. ..++..+.. ..||.||+= --+|+..
T Consensus 7 ~pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~--~~~d~vvfT---S~ngv~~~ 79 (381)
T PRK07239 7 APLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIA--APPDIVVAT---TGIGFRGW 79 (381)
T ss_pred CCCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHc--CCCCEEEEe---ChHHHHHH
Confidence 45678899999743 56788899999999887542 11 233444432 457766652 1345543
Q ss_pred HHHHHhcc-------CCCCccEEEEecCCCHHHHHHHHhCCCC-eEEeCCCCHHHHHHHHHH
Q 004541 151 LSKIMSHK-------TRKNLPVIMMSSLDSMGLVFKCLSKGAV-DFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 151 lr~IR~~~-------~~~~iPVI~LTa~~~~~~~~~al~aGad-dyL~KPi~~~eL~~~L~~ 204 (746)
++.++... ....++|+++-... ...+.+.|+. +|+..-++.+.|...+..
T Consensus 80 ~~~l~~~~~~~~~~~~l~~~~i~aVG~~T----a~aL~~~G~~~~~~p~~~~~e~L~~~l~~ 137 (381)
T PRK07239 80 VEAADGWGLADELLEALSSARLLARGPKA----TGAIRAAGLREEWSPASESSAEVLEYLLE 137 (381)
T ss_pred HHHHHHcCChHHHHHHHcCCeEEEECccH----HHHHHHcCCCCccCCCCCccHHHHHHHhc
Confidence 33333211 12467777665432 2334467774 566677788888777654
No 349
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=43.82 E-value=2.9e+02 Score=29.91 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=59.3
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--CCCC-CHHHHHHHHHhccCCCCccEEEEecCCCHHH
Q 004541 101 HVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--MP~m-dGlellr~IR~~~~~~~iPVI~LTa~~~~~~ 176 (746)
..|...-+.+|+++. .+.|.+|+-..++. ...||=++. +-.+ -.++.+.+|... ...+.-+|.-|+-...++
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~---ga~iIGINnRdL~tf~vdl~~t~~la~~-~p~~~~~IsESGI~~~~d 221 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKL---GAKIIGINNRDLTTLEVDLETTEKLAPL-IPKDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhC---CCCEEEEeCCCcchheecHHHHHHHHhh-CCCCcEEEecCCCCCHHH
Confidence 445555567899887 78898888777763 455564443 3332 134556666432 234566777788999999
Q ss_pred HHHHHhCCCCeEEeC
Q 004541 177 VFKCLSKGAVDFLVK 191 (746)
Q Consensus 177 ~~~al~aGaddyL~K 191 (746)
+.+....|+++||+=
T Consensus 222 v~~l~~~ga~a~LVG 236 (254)
T COG0134 222 VRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHcCCCEEEec
Confidence 999999999999964
No 350
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=43.58 E-value=58 Score=33.62 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCccEEEEcc-C---CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCC
Q 004541 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (746)
Q Consensus 111 G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-M---P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGad 186 (746)
++.|....+.+++-+++. ...|+|=+|. . | .+-.+++++||+.. +++|..-...+....+.++|+|
T Consensus 45 ~~~V~ITPT~~ev~~l~~---aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE---AGADIIALDATDRPRP-ETLEELIREIKEKY------QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHH---CT-SEEEEE-SSSS-S-S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CCCeEECCCHHHHHHHHH---cCCCEEEEecCCCCCC-cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCCC
Confidence 568888889999998887 4789999997 4 6 78889999997642 6778888889999999999976
Q ss_pred eEEe
Q 004541 187 DFLV 190 (746)
Q Consensus 187 dyL~ 190 (746)
|+.
T Consensus 115 -~I~ 117 (192)
T PF04131_consen 115 -IIG 117 (192)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 553
No 351
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=43.55 E-value=2.9e+02 Score=29.27 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=46.1
Q ss_pred EEEEE-ecChh---HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhc
Q 004541 89 KVLLV-ENDDS---TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (746)
Q Consensus 89 rVLVV-DDd~~---~r~~L~~lL~~~G~~V~~A-------~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~ 157 (746)
+|.|| +|++. ....+...|+..|++|... .+-...+..++. ..+|+||+.. ...+...+++.+++.
T Consensus 137 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~--~~~~~vi~~~-~~~~~~~~~~~~~~~ 213 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA--ANPDAVFFGG-YYPEAGPLVRQMRQL 213 (334)
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEcC-cchhHHHHHHHHHHc
Confidence 45444 44442 3455667777789887732 345566777776 6789998755 233566788888654
Q ss_pred cCCCCccEEEEe
Q 004541 158 KTRKNLPVIMMS 169 (746)
Q Consensus 158 ~~~~~iPVI~LT 169 (746)
. ...++|...
T Consensus 214 g--~~~~~~~~~ 223 (334)
T cd06342 214 G--LKAPFMGGD 223 (334)
T ss_pred C--CCCcEEecC
Confidence 3 345555443
No 352
>PLN02316 synthase/transferase
Probab=43.49 E-value=2.5e+02 Score=36.23 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=42.8
Q ss_pred ccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHH---------HhCCCCeEEeCCCCHHHHHHHHHH
Q 004541 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC---------LSKGAVDFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 134 ~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~a---------l~aGaddyL~KPi~~~eL~~~L~~ 204 (746)
.|++|+=-+-.--|+-++..++. .+|+|+-..-.-.+.+... ...+..+||..|.++..|..+|.+
T Consensus 920 ADiflmPS~~EP~GLvqLEAMa~-----GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~r 994 (1036)
T PLN02316 920 ADFILVPSIFEPCGLTQLTAMRY-----GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNR 994 (1036)
T ss_pred CcEEEeCCcccCccHHHHHHHHc-----CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHH
Confidence 56665533333447777777742 3455543222333333221 012468999999999999999999
Q ss_pred HHHHh
Q 004541 205 VWRRC 209 (746)
Q Consensus 205 vlrr~ 209 (746)
++..+
T Consensus 995 aL~~~ 999 (1036)
T PLN02316 995 AISAW 999 (1036)
T ss_pred HHhhh
Confidence 88754
No 353
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=43.36 E-value=2.7e+02 Score=32.24 Aligned_cols=102 Identities=13% Similarity=0.260 Sum_probs=61.5
Q ss_pred CccEEEEEec---ChhH-HHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCccEEEEccCCC------------CC
Q 004541 86 RSLKVLLVEN---DDST-RHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (746)
Q Consensus 86 ~~lrVLVVDD---d~~~-r~~L~~lL~~~-G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~------------md 146 (746)
.+..+++||- +... .+.++.+=+.+ ...|. .+.+.++|..++.. ..|.|.+-+=|+ ..
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCcc
Confidence 3577888886 3333 33333333332 34444 47788888887763 567774321111 11
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
-+.++..+.+......+|||+--+.....++.+|+.+||+.++.
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 23343434322222468999888889999999999999998774
No 354
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=43.36 E-value=1.5e+02 Score=31.18 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHH-------HHHHHhccCCCCc-cEEEE
Q 004541 101 HVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVAL-------LSKIMSHKTRKNL-PVIMM 168 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~A~---dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlel-------lr~IR~~~~~~~i-PVI~L 168 (746)
..+...+++.|+.+-.|- +..+.++.+. ...|+||+=. -||..|-.+ ++++|+....... ..|-+
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV 176 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVL---PELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEI 176 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHH---hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 344566777887766543 3344444333 3588888866 788776433 3333332111121 34778
Q ss_pred ecCCCHHHHHHHHhCCCCeE-----EeCCCCHHHHHHHHHHH
Q 004541 169 SSLDSMGLVFKCLSKGAVDF-----LVKPIRKNELKNLWQHV 205 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddy-----L~KPi~~~eL~~~L~~v 205 (746)
-+--..+.+..+.++||+-| |.+.-++.+....++..
T Consensus 177 DGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 177 DGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218 (223)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 88888899999999999955 44543455555444443
No 355
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=43.19 E-value=2.9e+02 Score=30.03 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=49.2
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEcc---------CCCCCHHHHHHHHHhccCCCCccEEEEec-CCCHHHHHHHHhCCCC
Q 004541 117 ATNGLQAWKILEDLTNHIDLVLTEV---------MPCLSGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAV 186 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~DLVLlDi---------MP~mdGlellr~IR~~~~~~~iPVI~LTa-~~~~~~~~~al~aGad 186 (746)
+++.+||.+.+++ ..+|.|-.-+ -|.+ ++++++.|++. -.+|+++.-+ .-..+.+.++++.|++
T Consensus 152 ~t~~eea~~f~~~--tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~---~~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKE--TGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL---TNIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCcc-CHHHHHHHHHH---hCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 5589999999975 4678777542 1344 48999999764 2599988863 3445678889999998
Q ss_pred eEEeC
Q 004541 187 DFLVK 191 (746)
Q Consensus 187 dyL~K 191 (746)
.+=.-
T Consensus 226 kiNv~ 230 (282)
T TIGR01859 226 KINID 230 (282)
T ss_pred EEEEC
Confidence 76443
No 356
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.08 E-value=3.2e+02 Score=29.30 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecC
Q 004541 99 TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
....+...|+..|+++.. ..+....+..+.. ..||+||+-. ..-....+++.+++.. ..+|+++....
T Consensus 149 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~--~~pdaV~~~~-~~~~a~~~~~~~~~~G--~~~~~~~~~~~ 223 (341)
T cd06341 149 AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA--AGADAIITVL-DAAVCASVLKAVRAAG--LTPKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh--cCCCEEEEec-ChHHHHHHHHHHHHcC--CCCCEEEecCC
Confidence 345567777778876542 1456677777766 5799998743 2226788899997654 45677665544
Q ss_pred CCHHH
Q 004541 172 DSMGL 176 (746)
Q Consensus 172 ~~~~~ 176 (746)
.....
T Consensus 224 ~~~~~ 228 (341)
T cd06341 224 YDPAL 228 (341)
T ss_pred CCHHH
Confidence 44443
No 357
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=42.97 E-value=1.8e+02 Score=32.32 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=43.1
Q ss_pred cEEEEEecChhH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~-----r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
.|+|||-|.... ...+...|+..|+++..+. +..++++.+++ ..+|+||- .-+.+-+++.+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG--IGGGSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHH
Confidence 589999887652 2567888888887766553 35567777776 67898886 455555666654
Q ss_pred H
Q 004541 154 I 154 (746)
Q Consensus 154 I 154 (746)
+
T Consensus 102 i 102 (357)
T cd08181 102 I 102 (357)
T ss_pred H
Confidence 4
No 358
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=42.88 E-value=34 Score=34.85 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=46.5
Q ss_pred hCCCEEE-EECCH-----HHHHHHHHhcCCCccEEEEccCCCCCH-------HHHHHHHHhccCCCCccEEEEecCCCHH
Q 004541 109 NCGYEVT-EATNG-----LQAWKILEDLTNHIDLVLTEVMPCLSG-------VALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (746)
Q Consensus 109 ~~G~~V~-~A~dG-----~EALe~L~~~~~~~DLVLlDiMP~mdG-------lellr~IR~~~~~~~iPVI~LTa~~~~~ 175 (746)
.+|++++ ..-+| .+..++|.+ -+.|++++|+.|.++- ..+++.||+. .+++|||+++......
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~--~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~--hP~tPIllv~~~~~~~ 106 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAE--IDADLIVLDCGPNMSPEEFRERLDGFVKTIREA--HPDTPILLVSPIPYPA 106 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHH--S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----TT
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhc--CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEecCCccc
Confidence 3477777 22222 455667776 5679999998433432 3577778654 5899999999643221
Q ss_pred HHHHHHhCCCCeEEeC--CCCHHHHHHHHHHHHHHhc
Q 004541 176 LVFKCLSKGAVDFLVK--PIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 176 ~~~~al~aGaddyL~K--Pi~~~eL~~~L~~vlrr~~ 210 (746)
. ++.+ -....+..+.++++++..+
T Consensus 107 ~-----------~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 107 G-----------YFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp T-----------TS--TTS--HHHHHHHHHHHHHHHH
T ss_pred c-----------ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222 2245677777777777653
No 359
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=42.71 E-value=69 Score=32.39 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.9
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl 139 (746)
|||||----+...+.++|++.|+++..+.+..+ + ..+|.||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l----~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I----LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h----ccCCEEEE
Confidence 689999999999999999999999998886543 2 34788887
No 360
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=42.70 E-value=87 Score=32.80 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCccEEEEcc-CCCCCHH-------HHHHHHHhccCCCCccEEE
Q 004541 100 RHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-------ALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~A----~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGl-------ellr~IR~~~~~~~iPVI~ 167 (746)
.......+++.|..+-.+ .+.+++.++++. ...|+|++=. -|+.+|. +-+++||+. .+. -.|.
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~--~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~--~~~-~~I~ 177 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT--DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKR--YPH-LNIQ 177 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc--chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHh--ccc-CeEE
Confidence 344555566677665433 344444444422 4467765422 6887764 333444432 122 3467
Q ss_pred EecCCCHHHHHHHHhCCCCeE-----EeCCCCHHHHHHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDF-----LVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddy-----L~KPi~~~eL~~~L~~vlrr 208 (746)
+.+--..+.+..+.++|++-+ |.+--++.+-...|+..++.
T Consensus 178 VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 178 VDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 788888889999999999854 34433566656666655544
No 361
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=42.69 E-value=1.3e+02 Score=31.30 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEcc-CCC-CCH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDi-MP~-mdG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+..+.+... ..-+|++|+ --+ +.| +++++++++. ..+|||+--+-...+++.+++..|++..+.
T Consensus 142 ~~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 666677777652 246899998 543 334 7888988654 468999988899999999999999998874
No 362
>PLN02823 spermine synthase
Probab=42.66 E-value=75 Score=35.46 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=39.5
Q ss_pred ccEEEEEecChhHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CC
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~-----G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP 143 (746)
..+|.+||=|+.+.++.+..|... .-++. ...|+.+.|+. ....|||||+|+ -|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---RDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---CCCCccEEEecCCCc
Confidence 358999999999999999998643 12343 45677766643 346899999998 65
No 363
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=42.57 E-value=1e+02 Score=34.10 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred EEEEEecChhHHHHHH-------HHHHhCCC--EEE-EECCHHHHHHHHHh---cCCCccEEEEccC--CCC----CHHH
Q 004541 89 KVLLVENDDSTRHVVA-------ALLRNCGY--EVT-EATNGLQAWKILED---LTNHIDLVLTEVM--PCL----SGVA 149 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~-------~lL~~~G~--~V~-~A~dG~EALe~L~~---~~~~~DLVLlDiM--P~m----dGle 149 (746)
.|||-|.+-...-.+. ..++..++ .|. .+.+.+||++.+.- -....|+|++|-| +.. +--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 3777776654432222 22323333 333 78999999999970 0135899999986 221 2223
Q ss_pred HHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCe
Q 004541 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 187 (746)
Q Consensus 150 llr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGadd 187 (746)
+.+.+... ....+|-.|+.-..+.+.+....|+|-
T Consensus 252 l~~av~~~---~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 252 LKEAVELI---NGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred HHHHHHhh---CCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 33333211 122347788888899999999999874
No 364
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=42.18 E-value=1e+02 Score=30.82 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhcCCCccEEEEcc-CCC--CCHHHHHHHHHhccCCCCccEEEE--ecCCCHHHHHHHHhCCCCeEEeCCC
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVKPI 193 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDi-MP~--mdGlellr~IR~~~~~~~iPVI~L--Ta~~~~~~~~~al~aGaddyL~KPi 193 (746)
+.++++++++.....+++ +.+ +|- -.|+++++.||+. ..++||++. ...........+.++|++.++.-..
T Consensus 11 ~~~~~~~~~~~l~~~i~~--ieig~~~~~~~g~~~i~~i~~~--~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 11 DLEEALELAKKVPDGVDI--IEAGTPLIKSEGMEAVRALREA--FPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred CHHHHHHHHHHhhhcCCE--EEcCCHHHHHhCHHHHHHHHHH--CCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 455666655543222333 333 332 3468888888764 246777763 2222223456788899886665433
No 365
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=42.02 E-value=2.4e+02 Score=30.52 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.-|+.+++.+. ..+|||+.-.... ..+.+..|..+||..|-+.++|..+|..++..
T Consensus 290 g~~~~~lEAma-----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 290 GFGLSLMEALS-----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ccChHHHHHHh-----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 34667777772 4688887532211 22455678889999999999999999998763
No 366
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=41.86 E-value=46 Score=35.72 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=39.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCccEEEEcc-CCC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~-------dG~EALe~L~~~~~~~DLVLlDi-MP~ 144 (746)
|||||+-.+-.+-..|...|...|++|+... +.++..+++.. ..||+||-=. +..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccceeec
Confidence 6899999999999999999999999988763 55666666665 5788888655 543
No 367
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=41.79 E-value=2.7e+02 Score=31.51 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=68.5
Q ss_pred ccEEEEEecCh-----hHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhc
Q 004541 87 SLKVLLVENDD-----STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (746)
Q Consensus 87 ~lrVLVVDDd~-----~~r~~L~~lL~~~G~--~V~~A~--dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~ 157 (746)
.++++||.+.. ...+.|+.+.+.++. .|.... +-++..++++. .|++|.=...+.=|+.+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~~E~Fgi~~lEAMa-- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMWNEHFGIGVVEYMA-- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCccCCcccHHHHHHH--
Confidence 47888888642 345667777777665 355443 35677777764 5676653344444788888873
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHh---CCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCLS---KGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al~---aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+....... .+... .|..+||.. ++++|.++|.+++.
T Consensus 347 ---~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 ---AGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred ---cCCcEEEEcCCCCc---hheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 34677754322222 22333 577889963 89999999999886
No 368
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=41.53 E-value=2.6e+02 Score=31.09 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=31.4
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEEC--------------------CHHHHHHHHHhcCCCccEEEEcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT--------------------NGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~--------------------dG~EALe~L~~~~~~~DLVLlDi 141 (746)
+.++|||+..-...+..+.. +.++||+|+.+. |.+..++++++ ..+|+|+...
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a-~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~--~~id~vi~~~ 83 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIE-AQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIER--EKPDYIVPEI 83 (395)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHH--hCCCEEEEee
Confidence 34578888777655554444 556777665322 33334445554 5688888754
No 369
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=41.44 E-value=2e+02 Score=30.41 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=61.1
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.++++|+.+.+. ...+.++++..+. .|.....-.+..+++.. .|++|+-...+--|..+++.+. ..+|
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e~~~~~~~Ea~a-----~G~P 288 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWEGFGLVVAEAMA-----CELP 288 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccccCCChHHHHHHH-----cCCC
Confidence 467777776554 3445555655543 34444444455555543 4666654421223667777773 4578
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
||+ +.... ..+.+.. .+++..|-+.++|.+.|..++.
T Consensus 289 vI~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 289 VVA-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred EEE-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 875 33222 1222222 5678899999999999999873
No 370
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=41.40 E-value=4.4e+02 Score=27.63 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=68.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEE--C-------CHHHHHHHHHhcCCCccEEEEccCCCCCHHH-HHHHHH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEA--T-------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVA-LLSKIM 155 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A--~-------dG~EALe~L~~~~~~~DLVLlDiMP~mdGle-llr~IR 155 (746)
.+.+||++=-+. -+..|...|+..|+.|..+ . ...+.++.+.. ..+|+|++=- -.+++ +++.+.
T Consensus 129 ~~~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~--~~~d~v~ftS---~~~~~~~~~~~~ 202 (255)
T PRK05752 129 PDPRVLIMRGEG-GRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEA--ERLNGLVVSS---GQGFEHLQQLAG 202 (255)
T ss_pred CCCEEEEEccCc-cHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHh--CCCCEEEECC---HHHHHHHHHHhC
Confidence 456899987774 5778999999999876532 1 24556666765 6788887732 01121 122221
Q ss_pred hc-cCCCCccEEEEecCCCHHHHHHHHhCCCCe-EEeCCCCHHHHHHHHHHH
Q 004541 156 SH-KTRKNLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 156 ~~-~~~~~iPVI~LTa~~~~~~~~~al~aGadd-yL~KPi~~~eL~~~L~~v 205 (746)
.. .....++++.++. .....+.+.|+.. ++.+--+.+.|.++|.+.
T Consensus 203 ~~~~~~~~~~~~~ig~----~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~~ 250 (255)
T PRK05752 203 ADWPELARLPLFVPSP----RVAEQARAAGAQTVVDCRGASAAALLAALRRQ 250 (255)
T ss_pred hhHHHhcCceEEEeCH----HHHHHHHHcCCCceeeCCCCChHHHHHHHHhc
Confidence 10 1134577777764 3445567888754 467778888888887754
No 371
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=41.40 E-value=96 Score=30.81 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=52.5
Q ss_pred EEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCH---HHHHHHHHhccCCCCccE
Q 004541 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG---VALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 91 LVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdG---lellr~IR~~~~~~~iPV 165 (746)
||||--..+...|...|+..|+++....--......+.. ...||.||+=- +...+- .++++++++ ..+||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~----~~~Pi 75 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLED-LDDYDGIIISGGPGSPYDIEGLIELIREARE----RKIPI 75 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHH-TTTSSEEEEECESSSTTSHHHHHHHHHHHHH----TTSEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhh-hcCCCEEEECCcCCccccccccccccccccc----cceEE
Confidence 789999999999999999999877755433222222211 25677666643 332331 234444432 57999
Q ss_pred EEEecCCCHHHHHHHHhCCC
Q 004541 166 IMMSSLDSMGLVFKCLSKGA 185 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGa 185 (746)
+-+.- +...-+...|.
T Consensus 76 lGIC~----G~Q~la~~~G~ 91 (192)
T PF00117_consen 76 LGICL----GHQILAHALGG 91 (192)
T ss_dssp EEETH----HHHHHHHHTTH
T ss_pred EEEee----hhhhhHHhcCC
Confidence 88765 44445555554
No 372
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.31 E-value=1.9e+02 Score=32.29 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCe------EEeC-CCCHHHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD------FLVK-PIRKNELKNLWQHVWRR 208 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGadd------yL~K-Pi~~~eL~~~L~~vlrr 208 (746)
++.++++++.- ..++|||.+.+-.+.+++.+++.+||+. ++.+ |.-..++..-|.+++.+
T Consensus 276 l~~v~~l~~~~-~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 276 TEVIRRLYKEL-GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 34666776432 2369999999999999999999999884 3555 87777888777777765
No 373
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=41.08 E-value=1e+02 Score=32.36 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=42.8
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCccEEEEcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~--V~-~A~dG~EALe~L~~~--~~~~DLVLlDi 141 (746)
.+|.-||-++......+..++..|+. +. ...+..+.|..+... ...||+|++|.
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 38999999999999999999998873 44 456777777766432 25799999998
No 374
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=41.00 E-value=1.6e+02 Score=35.54 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=57.5
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~-dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.++.+.+||.|+...+.+ ++.|+.|+..+ +-.+.|+...- .+.|+||+-.--+..-..++..+|+. +++++
T Consensus 422 ~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~~n~~i~~~ar~~--~p~~~ 493 (621)
T PRK03562 422 SGVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQTSLQLVELVKEH--FPHLQ 493 (621)
T ss_pred CCCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHHHHHHHHHHHHHh--CCCCe
Confidence 456788888888765444 34578776443 23334443332 46677776541122345666667654 57888
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL 189 (746)
||+-+. +.+...+..++|++..+
T Consensus 494 iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 494 IIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEe
Confidence 887664 34667788899998653
No 375
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.80 E-value=1.8e+02 Score=32.03 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=59.9
Q ss_pred EEEEE--ecCh---hHHHHHHHHHHhCCCEEEEECCHHHHHHHH----------------HhcCCCccEEEEccCCCCCH
Q 004541 89 KVLLV--ENDD---STRHVVAALLRNCGYEVTEATNGLQAWKIL----------------EDLTNHIDLVLTEVMPCLSG 147 (746)
Q Consensus 89 rVLVV--DDd~---~~r~~L~~lL~~~G~~V~~A~dG~EALe~L----------------~~~~~~~DLVLlDiMP~mdG 147 (746)
+|.|| .+.+ .....|..+|+..|+++....+..+.+..- ......+|+||+ -+.||
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---iGGDG 79 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV---LGGDG 79 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE---EeCcH
Confidence 46666 2233 234566777778899988755433322100 110123566655 36677
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.+++..|... ...+||+-+-. |-.+||.- +.++++...|.++++.
T Consensus 80 -TlL~aar~~~-~~~iPilGIN~-------------G~lGFLt~-~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 80 -TVLSAARQLA-PCGIPLLTINT-------------GHLGFLTE-AYLNQLDEAIDQVLAG 124 (305)
T ss_pred -HHHHHHHHhc-CCCCcEEEEeC-------------CCCccccc-CCHHHHHHHHHHHHcC
Confidence 3555555322 35789987753 45667765 6789999999998865
No 376
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=40.66 E-value=2.2e+02 Score=30.10 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=63.2
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CCCCCHH----HHHHHHHhccCC-
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV----ALLSKIMSHKTR- 160 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGl----ellr~IR~~~~~- 160 (746)
.+=+|..+ ....+..+++..|...-.+ .+..++++.+- ...|+|++=. -|+..|- +++.+||+....
T Consensus 89 t~H~E~~~-~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l---~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~ 164 (220)
T COG0036 89 TFHAEATE-HIHRTIQLIKELGVKAGLVLNPATPLEALEPVL---DDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI 164 (220)
T ss_pred EEEeccCc-CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH---hhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHh
Confidence 34456433 4455667778888876544 45666666655 3689999866 7988773 455555543221
Q ss_pred --CCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 161 --KNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 161 --~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
..-..|-+-+--..+.+..+..+||+-|+
T Consensus 165 ~~~~~~~IeVDGGI~~~t~~~~~~AGad~~V 195 (220)
T COG0036 165 DERLDILIEVDGGINLETIKQLAAAGADVFV 195 (220)
T ss_pred cccCCeEEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 11346777788888889999999998654
No 377
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.65 E-value=1.8e+02 Score=32.51 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=41.5
Q ss_pred cEEEEEecChhH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~~----r~~L~~lL~~~G~~V~~A~d---------G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.|||||-|.... ...+...|+..|+++..+.. ..++++.+++ ..+|+||- +-+.+-+++.+.+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~IIa--iGGGS~~D~aK~i 102 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE--NGCDAILA--VGGGSVIDCAKAI 102 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 489999876432 34567778777877765532 4578888877 67898875 4444455555544
No 378
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.63 E-value=2.6e+02 Score=28.56 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE--eCCCCHHHHHHHHHHH
Q 004541 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL--VKPIRKNELKNLWQHV 205 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL--~KPi~~~eL~~~L~~v 205 (746)
..++.++.||+. .++||++...-.....+..++++|++.++ ..-+..+++...+...
T Consensus 59 g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 59 GSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 356788888754 37999987655666678899999999887 3333345555555544
No 379
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=40.59 E-value=72 Score=31.80 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=45.7
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE-cc-C-CCCCHHHHHHHHHhccCCCCccEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT-EV-M-PCLSGVALLSKIMSHKTRKNLPVI 166 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl-Di-M-P~mdGlellr~IR~~~~~~~iPVI 166 (746)
|||||.-...-..+..+|+..|+++............... ..+|.||+ -- + +..+. ..+.|++. ....+||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil~gG~~~~~~~~--~~~~i~~~-~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVISPGPGHPEDAG--ISLEIIRA-LAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEECCCCCCcccch--hHHHHHHH-HhcCCCEE
Confidence 6899999999999999999999988865543332221121 45888666 22 2 22222 22223221 12458998
Q ss_pred EEec
Q 004541 167 MMSS 170 (746)
Q Consensus 167 ~LTa 170 (746)
-+.-
T Consensus 76 GIC~ 79 (184)
T cd01743 76 GVCL 79 (184)
T ss_pred EECH
Confidence 8764
No 380
>PRK10547 chemotaxis protein CheA; Provisional
Probab=40.58 E-value=37 Score=41.37 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=29.7
Q ss_pred CcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 25 ~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
....||+++++.++|. |.+.|.+|.|++|++.+|+..
T Consensus 489 vGL~iVk~~ve~lgG~------I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 489 VGMDVVKRNIQEMGGH------VEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred hhHHHHHHHHHHcCCE------EEEEecCCCcEEEEEEEechh
Confidence 3488999999987765 555788899999999998764
No 381
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.57 E-value=2.7e+02 Score=28.87 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhcCCCcc-EEEEcc-CC---CCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe---
Q 004541 119 NGLQAWKILEDLTNHID-LVLTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~D-LVLlDi-MP---~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~--- 190 (746)
+..+..+.+.. ..++ |+++|+ .- ..-.++++++|++. ..+|||+..+-.+.+++.+++..|++.++.
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 55666666655 3444 555565 21 12347888888754 369999999988888998999999998653
Q ss_pred ---CCCCHHHHHHH
Q 004541 191 ---KPIRKNELKNL 201 (746)
Q Consensus 191 ---KPi~~~eL~~~ 201 (746)
.|+.+.++...
T Consensus 225 ~~~~~~~~~~~~~~ 238 (241)
T PRK13585 225 LYKGKFTLEEAIEA 238 (241)
T ss_pred HhcCCcCHHHHHHH
Confidence 57766665544
No 382
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=40.51 E-value=4.2e+02 Score=28.19 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCccEEEEcc--CC----CCCHHHHHHHHHh
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~--dG~EALe~L~~~~~~~DLVLlDi--MP----~mdGlellr~IR~ 156 (746)
.++++||-+.+.. ..+..+.+.+|+ .|.... +.++..+++.. .|++|+=. .+ .--|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 5677788765533 455666666443 344322 33556666654 56666533 22 112667777773
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+- .... ..+.+..+-.+++..|-+.++|.++|.+++.
T Consensus 293 ----~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 ----SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred ----cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 45888853 3322 2344456667899999999999999998875
No 383
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=40.37 E-value=3.6e+02 Score=28.02 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=61.2
Q ss_pred ccEEEEEecCh----hHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc---CCC----CCHHHHHHHH
Q 004541 87 SLKVLLVENDD----STRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV---MPC----LSGVALLSKI 154 (746)
Q Consensus 87 ~lrVLVVDDd~----~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi---MP~----mdGlellr~I 154 (746)
+..|+-+|--. ..+..+...++..+.-+. -+.+.+|++...+ ..+|+|=+=+ -|. ..-|+|+++|
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~---~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAE---LGFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHH---TT-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHH---cCCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 44566666432 223444444555543333 4789999998887 4699997654 222 2358999999
Q ss_pred HhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 155 R~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
.+. .+|||+=-....++...+++++||+..++=
T Consensus 141 ~~~----~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 141 VQA----DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHT----TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HhC----CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 752 689988888899999999999999988753
No 384
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=40.36 E-value=42 Score=33.82 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc-C-CCC---CHHHHHHHHHhccCCCCccEEEEecCCC
Q 004541 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PCL---SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi-M-P~m---dGlellr~IR~~~~~~~iPVI~LTa~~~ 173 (746)
..+.. |+.+|+.+. -+..+...++.+.. -.||.|-+|. + ..+ .-..+++.|........+. |++++-.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~--l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLAS--LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK-VIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHH--HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E-EEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhh--cccccceeecccccccchhhHHHHHHHHHHHhhccccc-cceeecCC
Confidence 44444 778899887 35566677777776 6799999998 4 333 2344455443322223454 45688888
Q ss_pred HHHHHHHHhCCCC
Q 004541 174 MGLVFKCLSKGAV 186 (746)
Q Consensus 174 ~~~~~~al~aGad 186 (746)
.+....+.+.|++
T Consensus 214 ~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 214 EEQLELLKELGVD 226 (236)
T ss_dssp HHHHHHHHHTTES
T ss_pred HHHHHHHHHcCCC
Confidence 8999999999987
No 385
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=40.34 E-value=1.5e+02 Score=33.43 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=41.5
Q ss_pred cEEEEEecChhH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 88 lrVLVVDDd~~~-----r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
.|+|||-|.... .+.+...|+..|+++..+. +..++++.+++ ..+|+||- .-+.+-+++.+.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGRE--FGAQAVIA--IGGGSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHH--cCCCEEEE--eCCccHHHHHHH
Confidence 489999887653 3578888888888776654 23466777776 67898875 344444454444
Q ss_pred H
Q 004541 154 I 154 (746)
Q Consensus 154 I 154 (746)
+
T Consensus 103 i 103 (383)
T cd08186 103 A 103 (383)
T ss_pred H
Confidence 4
No 386
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.10 E-value=1.9e+02 Score=26.78 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=52.9
Q ss_pred EEEEEecCh----hHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCc
Q 004541 89 KVLLVENDD----STRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 89 rVLVVDDd~----~~r~~L~~lL~~~G~~V~~-A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~i 163 (746)
+||||=-.- .+...++++++..|+++.. +.+..+.-+.+.. ..+|+||+-- ... =....|++.-...++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--~~~DvIll~P--Qi~--~~~~~i~~~~~~~~i 76 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAA--AEYDLYLVSP--QTK--MYFKQFEEAGAKVGK 76 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhcc--CCCCEEEECh--HHH--HHHHHHHHHhhhcCC
Confidence 455554332 3445567777888987764 4444444343332 5689999832 211 012334333224678
Q ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~ 204 (746)
||.++.. .+|-.-|.+.+++...|..
T Consensus 77 pv~~I~~---------------~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 77 PVVQIPP---------------QAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred CEEEeCH---------------HHcCCCccCHHHHHHHHHh
Confidence 9988764 2355556777777666543
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=40.04 E-value=81 Score=32.24 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=63.7
Q ss_pred ccEEEEEecCh---hHHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHhcCCCccEEEEcc--CCCCC--HHHHHH
Q 004541 87 SLKVLLVENDD---STRHVVAALLRNCGYEVTEATN---GL----QAWKILEDLTNHIDLVLTEV--MPCLS--GVALLS 152 (746)
Q Consensus 87 ~lrVLVVDDd~---~~r~~L~~lL~~~G~~V~~A~d---G~----EALe~L~~~~~~~DLVLlDi--MP~md--Glellr 152 (746)
+.+|.+|--|. -..+.|+.+-+.+|..+..+.. .. ++++.+.. ..+|+||+|. +...+ -++-++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~--~~~D~vlIDT~Gr~~~d~~~~~el~ 106 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK--KGYDLVLIDTAGRSPRDEELLEELK 106 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH--TTSSEEEEEE-SSSSTHHHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh--cCCCEEEEecCCcchhhHHHHHHHH
Confidence 55777766443 3456677777888988876653 22 34555544 6799999998 43322 223333
Q ss_pred HHHhccCCCCccEEEEecCCCHHHHH---HHHh-CCCCeE-EeCCCCHHHHHHHHHHHHH
Q 004541 153 KIMSHKTRKNLPVIMMSSLDSMGLVF---KCLS-KGAVDF-LVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 153 ~IR~~~~~~~iPVI~LTa~~~~~~~~---~al~-aGaddy-L~KPi~~~eL~~~L~~vlr 207 (746)
.+.... .+.-.+++|++....+... .+++ .+.+.+ |+|=-....+-.+|.-+.+
T Consensus 107 ~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~~~ 165 (196)
T PF00448_consen 107 KLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLAYE 165 (196)
T ss_dssp HHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHHHH
T ss_pred HHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHHHH
Confidence 332222 2444567777766655533 3333 456654 5554333444444444433
No 388
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.03 E-value=3.6e+02 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=23.7
Q ss_pred EEecChhHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCccEEE
Q 004541 92 LVENDDSTRHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVL 138 (746)
Q Consensus 92 VVDDd~~~r~~L~~lL~~~G~~V~~A----~dG~EALe~L~~~~~~~DLVL 138 (746)
|-.+++.....+.+.|...|++++.+ ....++++.+++ ..++++|
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~--~~~~~~v 58 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAA--EVEEAIV 58 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHH--HCCCCEE
Confidence 33445555555566666677766532 244455555554 2345554
No 389
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=39.88 E-value=90 Score=38.60 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC-C--CEEEEECCH---HHHHHHHHhcCCCccEEEEcc--C-CCC-CHHHHHHHHH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC-G--YEVTEATNG---LQAWKILEDLTNHIDLVLTEV--M-PCL-SGVALLSKIM 155 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~-G--~~V~~A~dG---~EALe~L~~~~~~~DLVLlDi--M-P~m-dGlellr~IR 155 (746)
..++|||||.-...-..|..+|+.. | +.|.++... .+.+..+ ..||.||+-- + |.. .-+.+++.+.
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l----~~~D~VVIspGPG~p~~~~~~~i~~~i~ 79 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL----PLFDAIVVGPGPGNPNNAQDMGIISELW 79 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh----cCCCEEEECCCCCCccchhhhHHHHHHH
Confidence 3569999999988888888899886 3 555544322 2233222 3588888743 2 321 2245666665
Q ss_pred hccCCCCccEEEEec
Q 004541 156 SHKTRKNLPVIMMSS 170 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa 170 (746)
+......+||+-+.-
T Consensus 80 ~~~~~~~iPvLGICl 94 (742)
T TIGR01823 80 ELANLDEVPVLGICL 94 (742)
T ss_pred HhcccCCCcEEEEch
Confidence 432224689988764
No 390
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.86 E-value=58 Score=34.87 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEc
Q 004541 99 TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlD 140 (746)
.-..+...|+..||+|..+..-.+.++.+.. ..+|+||.=
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEe
Confidence 3466778888899999988766677777765 679999863
No 391
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=39.83 E-value=3e+02 Score=29.28 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=50.6
Q ss_pred ccEEEEE-ecCh---hHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHH
Q 004541 87 SLKVLLV-ENDD---STRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (746)
Q Consensus 87 ~lrVLVV-DDd~---~~r~~L~~lL~~~G~~V~~A-------~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR 155 (746)
..+|.+| +|+. .....+...++..|..+... .+....+..+.+ ..+|+||+-. .+...+.+++.++
T Consensus 136 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~--~~~dav~~~~-~~~~a~~~i~~~~ 212 (336)
T cd06326 136 LKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA--ARPQAVIMVG-AYKAAAAFIRALR 212 (336)
T ss_pred CceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh--cCCCEEEEEc-CcHHHHHHHHHHH
Confidence 3466665 4432 33455667777778765421 466677777765 4689888854 1225677888887
Q ss_pred hccCCCCccEEEEecCCCH
Q 004541 156 SHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~ 174 (746)
+.. ..+||+.++.....
T Consensus 213 ~~G--~~~~~~~~~~~~~~ 229 (336)
T cd06326 213 KAG--GGAQFYNLSFVGAD 229 (336)
T ss_pred hcC--CCCcEEEEeccCHH
Confidence 654 46777766654443
No 392
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=39.81 E-value=80 Score=33.48 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=44.6
Q ss_pred cEEEEEecChhHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH-----HHHHHHHH
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIM 155 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G-----~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG-----lellr~IR 155 (746)
.+|-+||=|+.+.++.+.+|.... -++. ...||...|+...+ ..||+||+|. -|...+ .++.+.++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 589999999999999999887531 1333 56777766655432 2899999999 775433 35555554
Q ss_pred h
Q 004541 156 S 156 (746)
Q Consensus 156 ~ 156 (746)
+
T Consensus 179 ~ 179 (246)
T PF01564_consen 179 R 179 (246)
T ss_dssp H
T ss_pred h
Confidence 3
No 393
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.80 E-value=2.5e+02 Score=29.64 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=41.8
Q ss_pred ccEEEEcc-CCC--CCHH---------------HHHHHHHhccCCCCccEEEEe-----cCCCHHHHHHHHhCCCCeEEe
Q 004541 134 IDLVLTEV-MPC--LSGV---------------ALLSKIMSHKTRKNLPVIMMS-----SLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 134 ~DLVLlDi-MP~--mdGl---------------ellr~IR~~~~~~~iPVI~LT-----a~~~~~~~~~al~aGaddyL~ 190 (746)
.|+|=+.+ .|+ .||. ++++.+|+ ..++|+++|+ ...-...+.++.++|++.++.
T Consensus 31 ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~---~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii 107 (244)
T PRK13125 31 VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRK---DVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLF 107 (244)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhc---cCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEE
Confidence 67666666 543 3553 35666653 3568988775 223334577899999999988
Q ss_pred C--CCC-HHHHHHHHHH
Q 004541 191 K--PIR-KNELKNLWQH 204 (746)
Q Consensus 191 K--Pi~-~~eL~~~L~~ 204 (746)
- |++ .+++...+..
T Consensus 108 ~dlp~e~~~~~~~~~~~ 124 (244)
T PRK13125 108 PDLLIDYPDDLEKYVEI 124 (244)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 6 454 3455444433
No 394
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=39.79 E-value=4.1e+02 Score=28.37 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCCCccEEEEecC----CCHHH-HHHHHhCCCCeEEeCCC--CHHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSL----DSMGL-VFKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 207 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~----~~~~~-~~~al~aGaddyL~KPi--~~~eL~~~L~~vlr 207 (746)
..+++.+ ...+|||++... ..... .....+.| .+++..|- +.++|.++|..++.
T Consensus 263 ~t~~Eam-----~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g-~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 263 STVAELA-----ALGLPAILIPLPYAADDHQTANARALVKAG-AAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred hHHHHHH-----HhCCCEEEeecCCCCCCcHHHhHHHHHhCC-CEEEEecCCCCHHHHHHHHHHHhc
Confidence 4455555 246899886422 11112 23333444 57888775 89999999988875
No 395
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.71 E-value=2.7e+02 Score=25.32 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=50.8
Q ss_pred EEEEEec--ChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE-cc-CCCCCHHHHHHHHHhccCCCCcc
Q 004541 89 KVLLVEN--DDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT-EV-MPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 89 rVLVVDD--d~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl-Di-MP~mdGlellr~IR~~~~~~~iP 164 (746)
+|+++-. .......+...|...|..+....+..+....+... ..-|++|+ .. --..+-+++++.++++ .++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~~~~~~~~~~~a~~~----g~~ 89 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGETKETVEAAEIAKER----GAK 89 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHc----CCe
Confidence 5555554 34455667777888899888887777766554431 22344443 33 2223456677777543 589
Q ss_pred EEEEecCCCHHH
Q 004541 165 VIMMSSLDSMGL 176 (746)
Q Consensus 165 VI~LTa~~~~~~ 176 (746)
||++|.......
T Consensus 90 iv~iT~~~~~~l 101 (139)
T cd05013 90 VIAITDSANSPL 101 (139)
T ss_pred EEEEcCCCCChh
Confidence 999999876433
No 396
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=39.54 E-value=2.9e+02 Score=28.89 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=50.7
Q ss_pred EECCHHHHHHHHHhcCCCccEEEEcc-CC-------CCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCe
Q 004541 116 EATNGLQAWKILEDLTNHIDLVLTEV-MP-------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 187 (746)
Q Consensus 116 ~A~dG~EALe~L~~~~~~~DLVLlDi-MP-------~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGadd 187 (746)
.+.+.+||++..+. .+|.|.+-- .| .-.|++.++++++.. .+|+|+|-+-. .+.+.+.++.|++.
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi~-~~nv~~v~~~Ga~g 182 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGIN-LENVPEVLEAGADG 182 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCCC-HHHHHHHHHhCCCe
Confidence 56789998887764 488888764 43 356899999997653 39999998854 56788999999986
Q ss_pred E
Q 004541 188 F 188 (746)
Q Consensus 188 y 188 (746)
+
T Consensus 183 V 183 (211)
T COG0352 183 V 183 (211)
T ss_pred E
Confidence 5
No 397
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=39.39 E-value=3.5e+02 Score=29.00 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=44.9
Q ss_pred EEEEE-ecChhHHHHHHHHHHhCCCEEE---E----ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCC
Q 004541 89 KVLLV-ENDDSTRHVVAALLRNCGYEVT---E----ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 89 rVLVV-DDd~~~r~~L~~lL~~~G~~V~---~----A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~ 160 (746)
+|.|+ +|+..-+..+..+-+.++-+++ . ..|....+..++. ..+|+|++ .+++-+...+++.+++....
T Consensus 136 ~vail~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~d~~~~i~~l~~--~~pd~v~~-~~~~~~~~~~~~~~~~~G~~ 212 (333)
T cd06359 136 RVFLIAPNYQAGKDALAGFKRTFKGEVVGEVYTKLGQLDFSAELAQIRA--AKPDAVFV-FLPGGMGVNFVKQYRQAGLK 212 (333)
T ss_pred eEEEEecCchhhHHHHHHHHHHhCceeeeeecCCCCCcchHHHHHHHHh--CCCCEEEE-EccCccHHHHHHHHHHcCcc
Confidence 45444 5555555544443344432333 1 2345666677766 67999997 44445678888998776544
Q ss_pred CCccEEEEe
Q 004541 161 KNLPVIMMS 169 (746)
Q Consensus 161 ~~iPVI~LT 169 (746)
++++++...
T Consensus 213 ~~~~~~~~~ 221 (333)
T cd06359 213 KDIPLYSPG 221 (333)
T ss_pred cCCeeeccC
Confidence 466665433
No 398
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=39.30 E-value=2.5e+02 Score=29.44 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=44.0
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCC-CHHHHHHHHH
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIM 155 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~m-dGlellr~IR 155 (746)
+.+|..||=++......+..+...|. .+. ...+..+..... ...||+|++.. +.-+ +-..+++.+.
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~~ 136 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTLW 136 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHHH
Confidence 35899999999999999999888775 233 344555532222 25799999987 6433 3345555554
No 399
>PRK04296 thymidine kinase; Provisional
Probab=39.29 E-value=43 Score=33.81 Aligned_cols=102 Identities=24% Similarity=0.299 Sum_probs=57.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEcc---CCCCCHHHHHHHHHhccCC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDi---MP~mdGlellr~IR~~~~~ 160 (746)
.+.+|+|+-..-..+.....++.++|+.+. ......+.++.+.+....+|+|++|- ++...-.++++.++.
T Consensus 29 ~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~~---- 104 (190)
T PRK04296 29 RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLDD---- 104 (190)
T ss_pred cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHHH----
Confidence 456888883211233334455666676543 35667777777653235789999994 443224566666643
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCH-HHHHHHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK-NELKNLWQHV 205 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~-~eL~~~L~~v 205 (746)
..+.|| +|+.. .+|..+||.. .+|......+
T Consensus 105 ~g~~vi-~tgl~-------------~~~~~~~f~~~~~L~~~aD~V 136 (190)
T PRK04296 105 LGIPVI-CYGLD-------------TDFRGEPFEGSPYLLALADKV 136 (190)
T ss_pred cCCeEE-EEecC-------------cccccCcCchHHHHHHhcCeE
Confidence 345555 45543 3466677754 4555544433
No 400
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=39.04 E-value=46 Score=39.47 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=49.9
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCccEEEEcc---CCCCCH--HHHHHHHHhccC
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV---MPCLSG--VALLSKIMSHKT 159 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG---~EALe~L~~~~~~~DLVLlDi---MP~mdG--lellr~IR~~~~ 159 (746)
.+|||||.....-..|.++|+.+|+++..+.+- ...++.+.. ..||.||+-- -|.-.+ .++++++
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~d~~~~~~i~~~~----- 74 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPSEAGCMPELLTRL----- 74 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChhhCCCCHHHHHHH-----
Confidence 489999999999999999999999988876542 223444443 4566777653 232222 2343333
Q ss_pred CCCccEEEEec
Q 004541 160 RKNLPVIMMSS 170 (746)
Q Consensus 160 ~~~iPVI~LTa 170 (746)
...+||+-+.-
T Consensus 75 ~~~iPILGICl 85 (531)
T PRK09522 75 RGKLPIIGICL 85 (531)
T ss_pred hcCCCEEEEcH
Confidence 23689887764
No 401
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=39.01 E-value=85 Score=32.63 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=61.5
Q ss_pred ccEEEEE-ecChhHHHHHHHHHHhC-CCEEE------EECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHHHh
Q 004541 87 SLKVLLV-ENDDSTRHVVAALLRNC-GYEVT------EATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVV-DDd~~~r~~L~~lL~~~-G~~V~------~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~IR~ 156 (746)
++-+=++ +|.......+..+++.. |+.++ .+.+..+||+.|.+ ..++-||+-= -+-.+|++.+++|.+
T Consensus 88 G~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~--lG~~rVLTSGg~~~a~~g~~~L~~lv~ 165 (201)
T PF03932_consen 88 GFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIE--LGFDRVLTSGGAPTALEGIENLKELVE 165 (201)
T ss_dssp EEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHH--HT-SEEEESTTSSSTTTCHHHHHHHHH
T ss_pred eeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHh--cCCCEEECCCCCCCHHHHHHHHHHHHH
Confidence 3333333 46666677788887754 77776 35689999999988 5799999987 567899999999965
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHh-CCCCeE
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDF 188 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~-aGaddy 188 (746)
... ..+ .||.-+--..+.+....+ .|+..|
T Consensus 166 ~a~-~~i-~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 166 QAK-GRI-EIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp HHT-TSS-EEEEESS--TTTHHHHHHHHT-SEE
T ss_pred HcC-CCc-EEEecCCCCHHHHHHHHHhhCCeEE
Confidence 532 234 344444344444555544 777665
No 402
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.79 E-value=4.4e+02 Score=31.85 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=64.1
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.++++||.|-+. +..+..+.+..|+ .|.....-.+..+++.. .|+.++=..-+.-|+.+++.+. ..+|
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~~EGfp~vlLEAMA-----~GlP 498 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSRYEGLPNVLIEAQM-----VGVP 498 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcccccCccHHHHHHHH-----hCCC
Confidence 467888877653 4566666666664 35554444455555543 5777663233445677887773 4589
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L 202 (746)
||+.-... ..+.+..|..+||..|.+...|.+.+
T Consensus 499 VVATdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 499 VISTPAGG----SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EEEeCCCC----cHHHcccCCcEEEECCCChhhHHHHH
Confidence 98543322 23556688999999999887776655
No 403
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.79 E-value=3.7e+02 Score=31.91 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=60.1
Q ss_pred ccEEEEE--ecChhHHHH---HHHHHH-hCCCEEEEECCHHHHHH----------------HHHhcCCCccEEEEccCCC
Q 004541 87 SLKVLLV--ENDDSTRHV---VAALLR-NCGYEVTEATNGLQAWK----------------ILEDLTNHIDLVLTEVMPC 144 (746)
Q Consensus 87 ~lrVLVV--DDd~~~r~~---L~~lL~-~~G~~V~~A~dG~EALe----------------~L~~~~~~~DLVLlDiMP~ 144 (746)
..+|+|| -+.+....+ |..+|+ ..|++|.........+. .+......+||||+ -|
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs---iG 270 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT---LG 270 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE---EC
Confidence 4578888 344444444 445555 46888876543322221 00000123566665 36
Q ss_pred CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 145 mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.||. +|+..|... ...+||+-+. .|-.+|| -++.++++...|.++++.
T Consensus 271 GDGT-lL~Aar~~~-~~~iPILGIN-------------~G~LGFL-t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 271 GDGT-VLWAASMFK-GPVPPVVPFS-------------MGSLGFM-TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CcHH-HHHHHHHhc-cCCCcEEEEe-------------CCCccee-cccCHHHHHHHHHHHHcC
Confidence 6773 444554322 3568888663 4667787 678999999999999874
No 404
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=38.69 E-value=3.7e+02 Score=28.70 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCCCccEEEEecCC---CHHHHHHHHhCCCCeEEeCCCC--HHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLD---SMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHVWR 207 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~---~~~~~~~al~aGaddyL~KPi~--~~eL~~~L~~vlr 207 (746)
..+++.+ ...+|||++.-.. ......+.+..+-.+++..|-+ +++|.++|.+++.
T Consensus 261 ~~l~Ea~-----~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 261 STVAELA-----AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHH-----HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 4455655 2468998763211 1122223455566778877754 9999999998874
No 405
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=38.64 E-value=3.6e+02 Score=30.14 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=67.2
Q ss_pred CCccEEEEEecC----hhHHHHHHHHHHhCCCEEEEEC--------CH---HHHHHHHHhcCCCccEEEEccCCCCCHH-
Q 004541 85 LRSLKVLLVEND----DSTRHVVAALLRNCGYEVTEAT--------NG---LQAWKILEDLTNHIDLVLTEVMPCLSGV- 148 (746)
Q Consensus 85 ~~~lrVLVVDDd----~~~r~~L~~lL~~~G~~V~~A~--------dG---~EALe~L~~~~~~~DLVLlDiMP~mdGl- 148 (746)
..+.+|||.--. ...+..|...|+..|+.|..+. .. .++++.+.+ ..+|+|++=- . ++.
T Consensus 140 ~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~--~~~d~v~FtS--~-stv~ 214 (381)
T PRK07239 140 VAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIAS--RGLDAVTFTS--A-PAVA 214 (381)
T ss_pred CCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHc--CCccEEEEcC--H-HHHH
Confidence 356688886322 0125678999999998766322 11 245556654 5788888733 1 111
Q ss_pred HHHHHHHhcc--------CCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004541 149 ALLSKIMSHK--------TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 149 ellr~IR~~~--------~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~~ 210 (746)
.+++.+.... ....+.|+.|... ....+.+.|+..++.+..+.+.|.++|...+...+
T Consensus 215 ~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~----Ta~al~~~G~~~~vp~~~t~~~Lv~~i~~~~~~~~ 280 (381)
T PRK07239 215 ALLERAREMGLLDQLLAALRTDVLAACVGPV----TAAPLVRAGVPTSAPERMRLGALARHITEELPLRR 280 (381)
T ss_pred HHHHHHHHcCChHHHHHhhccCCEEEEECHH----HHHHHHHcCCCccCCCCCCHHHHHHHHHHHhhhhc
Confidence 1223332110 1134556666553 33445666765567787899999998887766543
No 406
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.59 E-value=4e+02 Score=30.10 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=65.3
Q ss_pred ccEEEEEecC----hhHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc-------CCCCC-----H
Q 004541 87 SLKVLLVEND----DSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-------MPCLS-----G 147 (746)
Q Consensus 87 ~lrVLVVDDd----~~~r~~L~~lL~~~-G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi-------MP~md-----G 147 (746)
.+.+++||-- ..+.+.++.+=+.| +..|+. +.+++.|.+++. ...|.|.+-+ --..+ -
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~---aGAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELIL---SGADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHH---cCCCEEEEcccCCCcccCceeCCCCcCH
Confidence 4678888843 33344444444445 344442 567888887776 4678887552 11122 2
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
+.++..+........+|||+-.+-....++.+|+.+||+..+.=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 33444443333334799999999999999999999999988866
No 407
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=38.45 E-value=3.8e+02 Score=29.40 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccCCCCccEEEEecCC-C-HHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 147 GVALLSKIMSHKTRKNLPVIMMSSLD-S-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 147 Glellr~IR~~~~~~~iPVI~LTa~~-~-~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
|+.+++.+- ..+|||+..... . .+........|+ +..+-+.++|...|.+++.
T Consensus 283 g~t~~EA~a-----~g~PvI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 283 GITLSEAAA-----LGVPVILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred chHHHHHHH-----hCCCEEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 555556552 457887653222 1 122222334454 3345678899888888764
No 408
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=38.45 E-value=45 Score=39.37 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=43.8
Q ss_pred CCCCchhhHHHHHHHHHhc-------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 2 NVDGKADKRLQELNHCLQA-------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~-------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.|+|||.. .....++|.. ....-...+++.+++-++|.+.+ +|..+.|++|++.+|...
T Consensus 468 ~D~G~GI~-~~~~~~iFe~G~Stk~~~~rGiGL~Lvkq~V~~~~G~I~~------~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 468 ADTGPGIP-PEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERLGGSIEV------ESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred eCCCCCCC-hHHHHHHHhcCccccCCCCCchhHHHHHHHHHHcCceEEE------eeCCCCceEEEEECCCCc
Confidence 58999986 5566677732 22223388999999988887665 677799999999998764
No 409
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.31 E-value=2.5e+02 Score=29.44 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhcCCCcc-EEEEcc--C-CCC-CHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 118 TNGLQAWKILEDLTNHID-LVLTEV--M-PCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 118 ~dG~EALe~L~~~~~~~D-LVLlDi--M-P~m-dGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
.+..+..+.+.+ . ++ |+++|+ + .+. .-++++++|.+. ..+||++=-+-.+.+++.+++..|++..+.-
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 478888888776 3 54 677776 2 232 357888888643 4689988888888999999999999987653
No 410
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=38.03 E-value=1.1e+02 Score=32.62 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=42.2
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCccEEEEcc
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV 141 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~--~V~-~A~dG~EALe~L~~~---~~~~DLVLlDi 141 (746)
-+|.-+|-++......+..++..|+ .|. ...+..+.|..+... ...||+||+|.
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecC
Confidence 4899999999999999999999885 344 456777777666431 25799999998
No 411
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.96 E-value=2.8e+02 Score=27.77 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=40.7
Q ss_pred cEEEEcc--CCCC-CHHHHHHHHHhccCCCCccE-EEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHH
Q 004541 135 DLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPV-IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (746)
Q Consensus 135 DLVLlDi--MP~m-dGlellr~IR~~~~~~~iPV-I~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L 202 (746)
.+.++|- .|.. -+++++++|++. ...|| +.+..+.....+..+.+.|++.++.-....++....+
T Consensus 29 ~~~~~Dg~~~~~~~~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 29 HVDVMDGHFVPNLTFGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred EEcCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 3345553 3443 588999999853 34565 3244445567788888999998777655455554444
No 412
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.80 E-value=1.4e+02 Score=32.26 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhccCCCCccEEEEecCC------CHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 146 SGVALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI~LTa~~------~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
+.++++++||. ..++|+|+||-+. -.....+|.++|++++|.--+.++|....+..+
T Consensus 78 ~~~~~~~~~r~---~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNG---EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhc---CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 35677777763 2678999998753 345688899999999999988887766555544
No 413
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.78 E-value=1.8e+02 Score=31.39 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC-CCCccEEEEecCCCHHHHH
Q 004541 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT-RKNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~-~~~iPVI~LTa~~~~~~~~ 178 (746)
...+..+|+..|+++. . ..+|+||+ -|.||. +++.+|.... ...+||+-+-
T Consensus 17 ~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~---iGGDGT-~L~a~~~~~~~~~~iPilGIN--------- 68 (265)
T PRK04885 17 ASKLKKYLKDFGFILD-------------E--KNPDIVIS---VGGDGT-LLSAFHRYENQLDKVRFVGVH--------- 68 (265)
T ss_pred HHHHHHHHHHcCCccC-------------C--cCCCEEEE---ECCcHH-HHHHHHHhcccCCCCeEEEEe---------
Confidence 4455666666777631 1 34687776 366773 4455543221 2578988665
Q ss_pred HHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 179 KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 179 ~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.|-.+||. .+.++++...|.+++..
T Consensus 69 ----~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 69 ----TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred ----CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 36678998 68899999999998874
No 414
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=37.58 E-value=2.9e+02 Score=29.79 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=51.1
Q ss_pred hCCCEEEEECCHH-----HH---HH-HHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHH
Q 004541 109 NCGYEVTEATNGL-----QA---WK-ILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 109 ~~G~~V~~A~dG~-----EA---Le-~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~ 178 (746)
+.+++|..+.+|. ++ .. ++++ ..||+||+=. -|..-|-.-+|.+-+. .++|.|+++.........
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~d 103 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVKD 103 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchHH
Confidence 3477777776542 22 22 3344 7899999877 7777787777777432 578999999877766554
Q ss_pred HHHhCCCCeEEeC
Q 004541 179 KCLSKGAVDFLVK 191 (746)
Q Consensus 179 ~al~aGaddyL~K 191 (746)
..-+.|+-.+|.|
T Consensus 104 ~l~~~g~GYIivk 116 (277)
T PRK00994 104 AMEEQGLGYIIVK 116 (277)
T ss_pred HHHhcCCcEEEEe
Confidence 4445565544555
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.56 E-value=2.3e+02 Score=32.59 Aligned_cols=107 Identities=8% Similarity=0.090 Sum_probs=62.9
Q ss_pred CCccEEEEEecChhH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc--CCCCCHHHHHHHHHhc-c
Q 004541 85 LRSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSH-K 158 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~---r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdGlellr~IR~~-~ 158 (746)
....+|-||--|-.- .+.|+.+-+-+|+.+..|.++.+..+.+... ..+|+||+|. ++..|...+ .+|++. .
T Consensus 231 ~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~~d~ILVDTaGrs~~D~~~i-~el~~~~~ 308 (407)
T COG1419 231 KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RDCDVILVDTAGRSQYDKEKI-EELKELID 308 (407)
T ss_pred ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hcCCEEEEeCCCCCccCHHHH-HHHHHHHh
Confidence 345677777644321 2334444455689999999998877777653 4579999997 888887432 222221 1
Q ss_pred CCCCcc-EEEEecCCCHHHHHH----HHhCCCCeEEeCCC
Q 004541 159 TRKNLP-VIMMSSLDSMGLVFK----CLSKGAVDFLVKPI 193 (746)
Q Consensus 159 ~~~~iP-VI~LTa~~~~~~~~~----al~aGaddyL~KPi 193 (746)
....+- -++|++.....++.+ +-..+.+.||.-=+
T Consensus 309 ~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKl 348 (407)
T COG1419 309 VSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKL 348 (407)
T ss_pred ccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcc
Confidence 112332 355666555554444 34566777654433
No 416
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=37.54 E-value=1.1e+02 Score=33.24 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=45.9
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCC--C---EEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCC-----CCHHHHHHHH
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCG--Y---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKI 154 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G--~---~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-----mdGlellr~I 154 (746)
.-+|.+||=|+.+.++.+.+|-.+. . +|. ...||.+- +++....||+||+|. =|. +--.++.+.+
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~ 176 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---LRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGC 176 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---HHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHH
Confidence 3589999999999999999998763 2 333 45565554 444335799999999 662 1224566665
Q ss_pred Hh
Q 004541 155 MS 156 (746)
Q Consensus 155 R~ 156 (746)
++
T Consensus 177 ~~ 178 (282)
T COG0421 177 RR 178 (282)
T ss_pred HH
Confidence 43
No 417
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.53 E-value=3.3e+02 Score=29.20 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=52.8
Q ss_pred EEEecChh---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCC
Q 004541 91 LLVENDDS---TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 91 LVVDDd~~---~r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~ 160 (746)
+|..|++. ....++..|+..|.+|+. ..+....+..++. ..+|+||+-. ...+...+++.+++..
T Consensus 140 ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~v~~~~-~~~~~~~~~~~~~~~g-- 214 (340)
T cd06349 140 ILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRD--ANPDAIILIS-YYNDGAPIARQARAVG-- 214 (340)
T ss_pred EEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHh--cCCCEEEEcc-ccchHHHHHHHHHHcC--
Confidence 33455554 345677778888888762 2356677777776 7899998865 2235677888886543
Q ss_pred CCccEEEEecCCCHHHHH
Q 004541 161 KNLPVIMMSSLDSMGLVF 178 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~ 178 (746)
.++|++..+.......+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (340)
T cd06349 215 LDIPVVASSSVYSPKFIE 232 (340)
T ss_pred CCCcEEccCCcCCHHHHH
Confidence 457877665544444443
No 418
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=37.40 E-value=1.1e+02 Score=29.92 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc
Q 004541 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 84 ~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
.+.+.+|.++.... ....+...+.. +.+++.+.+..+++++|.. .++|++|.|.
T Consensus 107 dl~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~--g~~d~~i~~~ 160 (225)
T PF00497_consen 107 DLKGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS--GRIDAFIVDE 160 (225)
T ss_dssp GGTTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred hhcCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc--CCeeeeeccc
Confidence 34667899888854 44455554433 6788899999999999997 8999999986
No 419
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=37.39 E-value=2.3e+02 Score=31.59 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=45.9
Q ss_pred EEEEEecChhHHHHHHHHHHh---CCCEEEEEC-----------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 89 KVLLVENDDSTRHVVAALLRN---CGYEVTEAT-----------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~---~G~~V~~A~-----------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
+|.||=|+..-+..+..+++. .|++|.... +....|..++. ..+|+||+|.-+. +...+++++
T Consensus 120 ~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~--~~~~~Iil~~~~~-~~~~il~qa 196 (370)
T cd06389 120 KFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLEN--KKERRVILDCERD-KVNDIVDQV 196 (370)
T ss_pred EEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhcc--ccceEEEEECCHH-HHHHHHHHH
Confidence 444443444666666666554 477765322 34445556654 6799999998222 356788888
Q ss_pred HhccCCCCccEEEEecCCC
Q 004541 155 MSHKTRKNLPVIMMSSLDS 173 (746)
Q Consensus 155 R~~~~~~~iPVI~LTa~~~ 173 (746)
++......--..+++..+.
T Consensus 197 ~~~gm~~~~y~~il~~~~~ 215 (370)
T cd06389 197 ITIGKHVKGYHYIIANLGF 215 (370)
T ss_pred HHhCccccceEEEEccCCc
Confidence 7655332222334555433
No 420
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=37.36 E-value=3e+02 Score=29.91 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=48.2
Q ss_pred cEEEEEe-cCh---hHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 88 LKVLLVE-NDD---STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 88 lrVLVVD-Dd~---~~r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
.+|.|+- |++ .....++..|+..|.+|+. ..|....+..|+. ..+|+||+ ....-+...+++.+|+
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~--~~pd~v~~-~~~~~~~~~~~~~~~~ 210 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKA--AKPDVVVS-TVNGDSNVAFFKQLKA 210 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHH--hCCCEEEE-eccCCchHHHHHHHHH
Confidence 4566554 332 5556677788889998763 2244556666665 67999987 3333456788899887
Q ss_pred ccCCCC-ccEEE
Q 004541 157 HKTRKN-LPVIM 167 (746)
Q Consensus 157 ~~~~~~-iPVI~ 167 (746)
...... +|++.
T Consensus 211 ~G~~~~~~~~~~ 222 (348)
T cd06355 211 AGITASKVPVLS 222 (348)
T ss_pred cCCCccCCeeEE
Confidence 653322 45553
No 421
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.34 E-value=3e+02 Score=30.25 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=59.0
Q ss_pred EEEEEe--cChhH---HHHHHHHHHhCCCEEEEECCHHH---HHHH---------HHhcCCCccEEEEccCCCCCHHHHH
Q 004541 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQ---AWKI---------LEDLTNHIDLVLTEVMPCLSGVALL 151 (746)
Q Consensus 89 rVLVVD--Dd~~~---r~~L~~lL~~~G~~V~~A~dG~E---ALe~---------L~~~~~~~DLVLlDiMP~mdGlell 151 (746)
+|+||- +.+.. ...|..+|+..|++|........ ++.. .......+|+||+ -+.||. ++
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDGT-~L 82 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV---LGGDGT-FL 82 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE---ECCcHH-HH
Confidence 577773 33333 34556667778998886432111 1100 0111123566665 366773 34
Q ss_pred HHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 152 r~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
+..|... ...+||+-+-. |=.+||.- ++++++...|.++++.
T Consensus 83 ~aa~~~~-~~~~PilGIN~-------------G~lGFL~~-~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 83 SVAREIA-PRAVPIIGINQ-------------GHLGFLTQ-IPREYMTDKLLPVLEG 124 (296)
T ss_pred HHHHHhc-ccCCCEEEEec-------------CCCeEeec-cCHHHHHHHHHHHHcC
Confidence 4444322 35789987763 55778875 8899999999998865
No 422
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=37.27 E-value=1e+02 Score=28.24 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEE
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
+.|.=.|......|..+|+..|+.|.... +++. ...|++|+|. ... . .+--.+|.+
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~~--------~~~DvlItD~~~~~-~-------------~~~~a~I~~ 58 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQP--------DADDVLITDYEPQV-A-------------WPGRAVIRF 58 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-S-S------------TT-EEEEESS-S------------------SSEEEEE
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEec-CCCC--------CCCcEEEECCCccc-C-------------CcceEEEEE
Confidence 44455677888899999999999999877 4331 4579999998 321 0 112235666
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
+...-. ...+.-....|.-...+.||..+|.++
T Consensus 59 s~~hiG----~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 59 SRRHIG----PPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp ESS-SS----S--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred chHhCC----CccccCCCcEEeccCCHHHHHHHHHHh
Confidence 664322 233444566788888888988888775
No 423
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=37.25 E-value=3.6e+02 Score=30.70 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=44.7
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE------EeC-CCCHHHHHHHHHHHHHHhc
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVK-PIRKNELKNLWQHVWRRCH 210 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy------L~K-Pi~~~eL~~~L~~vlrr~~ 210 (746)
++.+++|++.....++|||...+-.+.+++.+++.+||+.+ +.+ |--..+|..-|..++.+..
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g 308 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKG 308 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcC
Confidence 44555554321113799999999999999999999998854 443 6666777777777777653
No 424
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=37.23 E-value=4.9e+02 Score=28.15 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCCCccEEEEecC----CCHH-HHHHHHhCCCCeEEeCCCC--HHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSL----DSMG-LVFKCLSKGAVDFLVKPIR--KNELKNLWQHVWR 207 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~----~~~~-~~~~al~aGaddyL~KPi~--~~eL~~~L~~vlr 207 (746)
..+++.+. ..+|||++... .... ......+.| .+++..|-+ +++|.++|..++.
T Consensus 263 ~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 263 STVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHHHc
Confidence 44555552 45899887531 1222 223344555 477776655 8999999998875
No 425
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=37.08 E-value=2.3e+02 Score=30.40 Aligned_cols=105 Identities=9% Similarity=0.073 Sum_probs=63.8
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
.+++||.+.+... .+...+ .....+.-.-+.++..+++.. .|++|+-.. +.-|+-+++.+. ..+|||+
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~-e~~g~~~~Eama-----~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE-EDFGIVPVEAMA-----SGTPVIA 289 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc-CCCCchHHHHHH-----cCCCEEE
Confidence 6788888766532 233311 112233333466667777765 566664323 334566666663 4579987
Q ss_pred EecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 168 LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
..... ..+.+..|..+++..|-++++|.++|..++..
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 54322 22344566778999999999999999988764
No 426
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=37.07 E-value=3.3e+02 Score=28.58 Aligned_cols=107 Identities=20% Similarity=0.261 Sum_probs=64.4
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHhcCCCccEEEEcc-CC-----CCCHHHHHHHHHh
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMS 156 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A--~dG~EALe~L~~~~~~~DLVLlDi-MP-----~mdGlellr~IR~ 156 (746)
.++++|+-+.+. ...+..+++.++. .|... -+.++..+++.. .|++|+=. -+ +--|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 456666665443 3445555555433 23322 234666666654 56666643 21 223566777762
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
..+|||+. ... ...+.+..+..+++.+|-+.++|.+.|..++.
T Consensus 284 ----~G~Pvi~~-~~~---~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 284 ----MGLPVIST-DVS---GIPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred ----cCCCEEec-CCC---CcchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46888753 222 22345666778899999999999999998775
No 427
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=37.06 E-value=2.2e+02 Score=31.88 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=42.7
Q ss_pred cEEEEEecChhH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~~----r~~L~~lL~~~G~~V~~A~d---------G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.|+|||-|.... ...+...|+..|.++..+.. .+++++.+++ ..+|+||- .-+.+-+++.+.|
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFIIS--IGGGSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEEE--eCCcHHHHHHHHH
Confidence 489999876543 34677888887877765543 4566777766 67898885 4455556666655
No 428
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=37.01 E-value=4.4e+02 Score=27.79 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCH
Q 004541 118 TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 118 ~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~ 174 (746)
.|....+..+++ ..+|+|++-. ....+..+++.+++.....++|++........
T Consensus 173 ~d~~~~i~~l~~--~~~d~i~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 173 LDFSAELAQIRA--AKPDAVFVFL-PGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred cchHHHHHHHHh--cCCCEEEEec-ccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 355556677765 6799998733 33457788888876654446777755444443
No 429
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.95 E-value=89 Score=35.94 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhc
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~ 157 (746)
.....||||--.--+..++.+.|.+.||.|. .+.+.+++..++.. ...|+.+.++ .+...+.+.+..+...
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~--~~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV--FFVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc--cccccccceeeeccccccchhhhhhhh
Confidence 4567899999999999999999999999998 68899999998873 4568888888 8888899988888643
No 430
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.92 E-value=1e+02 Score=35.41 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=41.5
Q ss_pred CCccEEEEcc-CC-CCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 132 NHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 132 ~~~DLVLlDi-MP-~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
...|+|++|. -+ ...-++++++||+. +++++|| +..-...+....++++|||.+.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 5799999999 76 35667889999754 4677654 4455567888899999998765
No 431
>PRK06769 hypothetical protein; Validated
Probab=36.58 E-value=4.3e+02 Score=26.09 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=44.6
Q ss_pred HHHhCCCEEEEECCHHH----------HHHHHHhcCCCccEEEEcc-C-C-----CCCHHHHHHHHHhccCCCCccEEEE
Q 004541 106 LLRNCGYEVTEATNGLQ----------AWKILEDLTNHIDLVLTEV-M-P-----CLSGVALLSKIMSHKTRKNLPVIMM 168 (746)
Q Consensus 106 lL~~~G~~V~~A~dG~E----------ALe~L~~~~~~~DLVLlDi-M-P-----~mdGlellr~IR~~~~~~~iPVI~L 168 (746)
.|+..||.+..+++... ++..+.. ..++-++... . . ...-.+++..+.++-....--+|++
T Consensus 39 ~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~I 116 (173)
T PRK06769 39 KLKANHIKIFSFTNQPGIADGIATIADFVQELKG--FGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVI 116 (173)
T ss_pred HHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHh--CCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEE
Confidence 44666999888877542 3444443 3354444332 1 1 1222233333322211111125666
Q ss_pred ecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 169 SSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 169 Ta~~~~~~~~~al~aGaddyL~KP 192 (746)
-. ...++..|..+|+.-++..+
T Consensus 117 GD--~~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 117 GD--RWTDIVAAAKVNATTILVRT 138 (173)
T ss_pred cC--CHHHHHHHHHCCCeEEEEec
Confidence 64 45788899999999888876
No 432
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.54 E-value=36 Score=31.09 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=45.2
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
.||||.-|.. --+...|...||.-+.--+|.+--..-..-+...||||+=. +.-+-.+...|+.......|||+.
T Consensus 2 SvlviGaD~l--g~I~~kL~e~GfskIeHvtgRk~~~~kk~Ips~~dlilvLt--df~nHNl~~~iK~eakk~~ip~~~ 76 (103)
T COG4378 2 SVLVIGADEL--GPIRAKLHELGFSKIEHVTGRKNRVNKKPIPSDTDLILVLT--DFLNHNLMKKIKNEAKKRKIPLVC 76 (103)
T ss_pred eEEEEccccc--ccHHHHHHhcChhheEEeeccccccccccCCCCccEEEEEh--hhhcchHHHHHHHHHhhcCCCeEE
Confidence 5888887754 46788899999965544445432111111245567776633 323445667776665567888875
No 433
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=36.49 E-value=2.2e+02 Score=30.77 Aligned_cols=91 Identities=11% Similarity=0.067 Sum_probs=58.0
Q ss_pred EEEEEecChhHHHH----HHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCC
Q 004541 89 KVLLVENDDSTRHV----VAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (746)
Q Consensus 89 rVLVVDDd~~~r~~----L~~lL~~~G--~~V-~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~ 160 (746)
.|||.|++....-. +..+=+..+ ..+ +.+.+.+||++.+. ...|.|.+|- -| +.++++.+.- .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~---~gaDyI~ld~~~~-----e~lk~~v~~~-~ 220 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE---AGADIIMLDNMKP-----EEIKEAVQLL-K 220 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCH-----HHHHHHHHHh-c
Confidence 68888887554422 222223344 233 47899999999886 4689999998 34 4444443221 1
Q ss_pred CCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 161 ~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
..+||++ ++--..+.+......|++.+-
T Consensus 221 ~~ipi~A-sGGI~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 221 GRVLLEA-SGGITLDNLEEYAETGVDVIS 248 (265)
T ss_pred CCCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 2377665 555567888899999988654
No 434
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=36.44 E-value=1.1e+02 Score=33.53 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhccCCCCccEE--EEecCCCHHHHHHHHhCCCCeEEe-----CCCCHHHHHHHHHHHHHHh
Q 004541 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 146 dGlellr~IR~~~~~~~iPVI--~LTa~~~~~~~~~al~aGaddyL~-----KPi~~~eL~~~L~~vlrr~ 209 (746)
.+++++++|++. ..+||| +..+-..++.+.++++.|++.++. +.-++.+....+...+.++
T Consensus 181 ~d~elLk~l~~~---~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 181 APYELVKETAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 478889998754 358997 777777899999999999998854 3446777777777766664
No 435
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=36.38 E-value=72 Score=32.68 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=43.6
Q ss_pred EEEEEecC---------hhHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHH
Q 004541 89 KVLLVEND---------DSTRHVVAALLR-NCGYEVTEATNGLQAW-KILEDLTNHIDLVLTEV-MPC-LSGVALLSKIM 155 (746)
Q Consensus 89 rVLVVDDd---------~~~r~~L~~lL~-~~G~~V~~A~dG~EAL-e~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR 155 (746)
|||||.-. +.....|..+|+ ..+|+|+...+....- +.| ..+|+||+.. ..+ ++- +..+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 57777766 257788999999 7799999877743321 223 4699999988 643 433 2233332
Q ss_pred hccCCCCccEEEEe
Q 004541 156 SHKTRKNLPVIMMS 169 (746)
Q Consensus 156 ~~~~~~~iPVI~LT 169 (746)
..- ....++|++=
T Consensus 76 ~~v-~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYV-ENGGGLVGLH 88 (217)
T ss_dssp HHH-HTT-EEEEEG
T ss_pred HHH-HcCCCEEEEc
Confidence 211 1346777775
No 436
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=36.30 E-value=2.3e+02 Score=34.42 Aligned_cols=112 Identities=6% Similarity=-0.009 Sum_probs=73.0
Q ss_pred ccEEEEEecChh-----HHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCccEEEEc-c--CCCCCHHHHHHHHH
Q 004541 87 SLKVLLVENDDS-----TRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTE-V--MPCLSGVALLSKIM 155 (746)
Q Consensus 87 ~lrVLVVDDd~~-----~r~~L~~lL~~~G~~V~---~A~dG~EALe~L~~~~~~~DLVLlD-i--MP~mdGlellr~IR 155 (746)
..+|.|+-==+. -......+|.--||++. .+.+.+++.+.+.. ...+|+++= . -..-.+-++++.||
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 346777643332 23445666776799887 34678888888876 445555543 2 33345778999997
Q ss_pred hccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHH
Q 004541 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vl 206 (746)
+.. . .+|+|.+.... ......+|+|+||.-=.+.-+++..+++.+
T Consensus 572 ~ag--~--~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~~~ 616 (619)
T TIGR00642 572 AAG--A--KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLDIL 616 (619)
T ss_pred hCC--C--CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHHHh
Confidence 654 2 36777777643 444788999999999888766665555443
No 437
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=36.29 E-value=1.3e+02 Score=31.50 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=52.9
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEcc--CCCCCH--HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 117 ATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~DLVLlDi--MP~mdG--lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
..+..+.+..+.. ...++||++|+ .--+.| +|++..++.. ..-||++=-+-..+++.+.++..|+.+.|.-
T Consensus 136 ~ed~le~Vk~l~~-~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~---s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 136 LEDFLETVKDLNY-RRDPGLIVLDIGAVGTKSGPDYELLTKVLEL---SEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred chhHHHHHHHHhc-cCCCCeEEEEccccccccCCCHHHHHHHHHh---ccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 4555666655543 35789999999 455665 6888888643 4567888888888999999999999998753
No 438
>PRK09835 sensor kinase CusS; Provisional
Probab=36.20 E-value=45 Score=37.49 Aligned_cols=56 Identities=9% Similarity=-0.111 Sum_probs=37.7
Q ss_pred CCCCchhhHHHHHHHHHhc------------CCCCCcccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeec
Q 004541 2 NVDGKADKRLQELNHCLQA------------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (746)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~------------~~~~~~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl 65 (746)
.|+|+|.. ...+.+.+.. .+....++|++++++.+||.+.+ .|. +.|++|++.+|.
T Consensus 413 ~d~G~gi~-~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~------~s~-~~g~~~~i~lP~ 480 (482)
T PRK09835 413 ENPGTPIA-PEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAV------TSD-ARGTRFVISLPR 480 (482)
T ss_pred EECCCCcC-HHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEE------EEC-CCcEEEEEEeeC
Confidence 36788875 4456666532 12234589999999999987544 444 358889888874
No 439
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=35.99 E-value=1.6e+02 Score=33.54 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=42.8
Q ss_pred cEEEEEecChhH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~~----r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.++|||-|.... ...+...|+..|.++..+. ...++++.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~Iia--vGGGS~iD~AKai 125 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGVIA--FGGGSVLDAAKAV 125 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEEEE--eCChHHHHHHHHH
Confidence 588888775332 3557888888888766542 35678888887 78999986 4555556655554
No 440
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.93 E-value=1.8e+02 Score=30.44 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhC------C--CEEEEECC---HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHH
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNC------G--YEVTEATN---GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~------G--~~V~~A~d---G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~ 153 (746)
..+.+|||||-|+.- .+..+++.. . +.+....+ ..++++.+.. ..||+||+|+-|.. +..+...
T Consensus 28 ~~G~~VlliD~DpQ~--s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~yD~iiID~pp~~-~~~~~~a 102 (231)
T PRK13849 28 SDGKRVALFEADENR--PLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAEL--QGFDYALADTHGGS-SELNNTI 102 (231)
T ss_pred hCCCcEEEEeCCCCC--CHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhh--CCCCEEEEeCCCCc-cHHHHHH
Confidence 456799999988743 233444322 1 11111111 1223333332 56999999984433 3444444
Q ss_pred H
Q 004541 154 I 154 (746)
Q Consensus 154 I 154 (746)
|
T Consensus 103 l 103 (231)
T PRK13849 103 I 103 (231)
T ss_pred H
Confidence 4
No 441
>PRK03612 spermidine synthase; Provisional
Probab=35.86 E-value=1.4e+02 Score=35.22 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=43.0
Q ss_pred cEEEEEecChhHHHHHHH--HHHhC---C---CEEE-EECCHHHHHHHHHhcCCCccEEEEcc-CCCCCH------HHHH
Q 004541 88 LKVLLVENDDSTRHVVAA--LLRNC---G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG------VALL 151 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~--lL~~~---G---~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdG------lell 151 (746)
.+|.+||=|+.+.+..++ .|..+ . -++. ...|+.+.++. ....||+||+|. -|...+ .|+.
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~---~~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK---LAEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh---CCCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 589999999999999888 44332 1 1343 45666665543 236899999998 765322 2455
Q ss_pred HHHHh
Q 004541 152 SKIMS 156 (746)
Q Consensus 152 r~IR~ 156 (746)
+.+++
T Consensus 399 ~~~~~ 403 (521)
T PRK03612 399 RLLKR 403 (521)
T ss_pred HHHHH
Confidence 55543
No 442
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.79 E-value=2.4e+02 Score=30.99 Aligned_cols=103 Identities=17% Similarity=0.333 Sum_probs=54.5
Q ss_pred cEEEEEec--Ch---hHHHHHHHHHHhCCCEEEEECCHHHHH--HH-HHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 88 LKVLLVEN--DD---STRHVVAALLRNCGYEVTEATNGLQAW--KI-LEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 88 lrVLVVDD--d~---~~r~~L~~lL~~~G~~V~~A~dG~EAL--e~-L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
.+|+||=. .+ .....+..+|+..|++|.......+.. .. .......+|+||+ -+-||. +++.++...
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGT-~l~~~~~~~- 78 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV---LGGDGT-VLAAARHLA- 78 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE---ECCcHH-HHHHHHHhc-
Confidence 35777632 22 334556667778899987644322221 11 1111235777776 366773 333333221
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCC-HHHHHHHHHHHHHH
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWRR 208 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~-~~eL~~~L~~vlrr 208 (746)
..++||+.+.. .|-.+||.-... ..+ ...|.+++..
T Consensus 79 ~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 79 PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 35789988764 244678885421 223 5666666553
No 443
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=35.78 E-value=95 Score=33.50 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=38.9
Q ss_pred ccEEEEEecChh---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc
Q 004541 87 SLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 87 ~lrVLVVDDd~~---~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
+.+|.||+-|+. ....+..+-+..|+.+..+.+..+..+.+... ..+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 378999998873 24455555566688777778877777777653 4589999995
No 444
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.71 E-value=1.1e+02 Score=30.42 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=53.3
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~--G~~V~~A~-------dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR 155 (746)
.+.+|.++-..+.+...+...|+.. |..++... +..+.++.+.. ..+|+||+-+ +|.-. .++.+++
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 4679999999999999988888765 66666432 22335677776 7899999999 99755 3445554
Q ss_pred hccCCCCccEEEEec
Q 004541 156 SHKTRKNLPVIMMSS 170 (746)
Q Consensus 156 ~~~~~~~iPVI~LTa 170 (746)
+.- ..+|++-.+
T Consensus 121 ~~l---~~~v~~~vG 132 (171)
T cd06533 121 DRL---PVPVAIGVG 132 (171)
T ss_pred HHC---CCCEEEEec
Confidence 332 345555443
No 445
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=35.70 E-value=3.8e+02 Score=29.26 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=18.9
Q ss_pred CCeEEeCCCCHHHHHHHHHHHHH
Q 004541 185 AVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 185 addyL~KPi~~~eL~~~L~~vlr 207 (746)
+..|+.+..++++|.+.|..++.
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhc
Confidence 35578889999999999988875
No 446
>PRK09727 his operon leader peptide; Provisional
Probab=35.68 E-value=15 Score=25.09 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.4
Q ss_pred ceeccc
Q 004541 606 LTQHYD 611 (746)
Q Consensus 606 ~~~~~~ 611 (746)
+.+|||
T Consensus 6 fkhhhh 11 (26)
T PRK09727 6 FKHHHH 11 (26)
T ss_pred eecccc
Confidence 444433
No 447
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=35.68 E-value=1.5e+02 Score=31.72 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHH
Q 004541 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (746)
Q Consensus 98 ~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~ 176 (746)
..-..|..+.++.|....+..-..+++++|.+ +++-+.=+ -.+++-+.|++.+.+ ...|||+=|+....+.
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHHH
Confidence 34456777788889988877777888899876 44445555 567888999999964 4689999999988877
Q ss_pred HHHHH----hCCCCeEE-e-----CCCCHHHHHHHHHHHHH
Q 004541 177 VFKCL----SKGAVDFL-V-----KPIRKNELKNLWQHVWR 207 (746)
Q Consensus 177 ~~~al----~aGaddyL-~-----KPi~~~eL~~~L~~vlr 207 (746)
+.+++ +.|..++. . -|-.++++--..-..|+
T Consensus 128 I~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~ 168 (241)
T PF03102_consen 128 IERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLK 168 (241)
T ss_dssp HHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHH
Confidence 66654 34554432 1 25556665443334444
No 448
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=35.67 E-value=4.1e+02 Score=28.59 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEE---E------CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccC
Q 004541 99 TRHVVAALLRNCGYEVTE---A------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~---A------~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~ 159 (746)
....+...|+..|.+|.. . .+....|..++. ..+|+||+.. +..+...+++++++...
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~dvvi~~~-~~~~~~~~~~~a~~~g~ 217 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKE--KDSRVIVVHF-SPDLARRVFCEAYKLGM 217 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhc--CCCeEEEEEC-ChHHHHHHHHHHHHcCC
Confidence 356677778888888763 2 234555666654 5689999765 23367788888876543
No 449
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.67 E-value=94 Score=31.65 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=35.5
Q ss_pred cEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEE
Q 004541 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (746)
Q Consensus 88 lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLl 139 (746)
++|+|||--.-+...+...|++.|+++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~----~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I----LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h----CCCCEEEE
Confidence 47999998888888899999999999999988743 2 24677665
No 450
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=35.64 E-value=4.6e+02 Score=27.56 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=58.7
Q ss_pred ecChhHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHHhccCCCCccE
Q 004541 94 ENDDSTRHVVAALLRNCGYEVTE-A-----TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPV 165 (746)
Q Consensus 94 DDd~~~r~~L~~lL~~~G~~V~~-A-----~dG~EALe~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR~~~~~~~iPV 165 (746)
.|.....++++.+- ..++-|.. . .+..+..+.+.+ ...|.|-.+. .++ .--++++++++ .++||
T Consensus 123 ~~p~~l~eiv~avr-~~~~pVsvKir~g~~~~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipV 194 (233)
T cd02911 123 KDPERLSEFIKALK-ETGVPVSVKIRAGVDVDDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDIS-----TELFI 194 (233)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEEcCCcCcCHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhc-----CCCEE
Confidence 44455555555554 34554431 1 355566666665 5578777777 554 22366777664 46999
Q ss_pred EEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 166 IMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 166 I~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
|..-.-.+.++..+++..|++.+..
T Consensus 195 IgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 195 IGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999987643
No 451
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=35.62 E-value=3.3e+02 Score=30.84 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred ccEEEEcc-CCCCCHHH-HHHHHHhccCCCCccEEEEecC-CCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 134 IDLVLTEV-MPCLSGVA-LLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 134 ~DLVLlDi-MP~mdGle-llr~IR~~~~~~~iPVI~LTa~-~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
.+.+|++. -+..--+| ++..+. .....||..... .+.......|+.|++++|.+|-++.+++.+...+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~----~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ----GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc----CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 55566655 33222222 344442 133455554443 334557789999999999999999999987776544
No 452
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.52 E-value=1.3e+02 Score=29.99 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred CccEEEEEecChhHHHHHHHHHHhC--CCEEEEECCH-------HHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHH
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~--G~~V~~A~dG-------~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR 155 (746)
.+.+|.++-..+.+.+.+...|+.. |..++-+.++ ++.++.+.. ..+||||+-+ +|.-. .++.+++
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 4679999999999999888888876 6777755443 445666666 7899999999 99744 3445554
Q ss_pred h
Q 004541 156 S 156 (746)
Q Consensus 156 ~ 156 (746)
.
T Consensus 123 ~ 123 (172)
T PF03808_consen 123 Q 123 (172)
T ss_pred H
Confidence 3
No 453
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=35.51 E-value=1.8e+02 Score=32.85 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=42.0
Q ss_pred cEEEEEecChh----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~----~r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.|||||-|... ....+...|+..|+++..+. ..+++++++++ ..+|+||- +-+.+-+++.+.|
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~AK~i 97 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNS--FKPDTIIA--LGGGSPMDAAKIM 97 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 48999987543 33457778888888776553 45577777776 67898885 4444455555544
No 454
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.49 E-value=2.4e+02 Score=29.78 Aligned_cols=97 Identities=9% Similarity=0.077 Sum_probs=62.3
Q ss_pred EEEEecChhHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCccEEEE-ccCCCC--------CHHHHHHHHHhc
Q 004541 90 VLLVENDDSTRHVVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLT-EVMPCL--------SGVALLSKIMSH 157 (746)
Q Consensus 90 VLVVDDd~~~r~~L~~lL~~~G~~V~~-A--~dG~EALe~L~~~~~~~DLVLl-DiMP~m--------dGlellr~IR~~ 157 (746)
|+|.|-.......+...+++.|..... + .+..+.++.+.. ...|.|++ -++|.. +..+.+++||+.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~--~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAE--LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh--hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 555565666566677778888886653 2 234555665554 23444443 224431 234667777653
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCC
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KP 192 (746)
.++||++=.+-...+.+.++.++ ||.++.--
T Consensus 186 ---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 ---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred ---CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 57999988887778888899999 99998763
No 455
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=35.39 E-value=5.7e+02 Score=27.11 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=49.2
Q ss_pred EEEEE-ecChhHH---HHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhc
Q 004541 89 KVLLV-ENDDSTR---HVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (746)
Q Consensus 89 rVLVV-DDd~~~r---~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~ 157 (746)
+|.+| .|....+ ..+...|++.|+++.. ..|-...+..+++ ..+|+|++= ...-+...+++.+++.
T Consensus 136 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~--~~pd~v~~~-~~~~~~~~~~~~~~~~ 212 (336)
T cd06360 136 KVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD--DVPDAVFVF-FAGGDAIKFVKQYDAA 212 (336)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHh--cCCCEEEEe-cccccHHHHHHHHHHc
Confidence 44444 5544443 4566777777887752 3466777777776 679998863 3344567788888765
Q ss_pred cCCCCccEEEEec
Q 004541 158 KTRKNLPVIMMSS 170 (746)
Q Consensus 158 ~~~~~iPVI~LTa 170 (746)
....++|++-...
T Consensus 213 g~~~~~~~~~~~~ 225 (336)
T cd06360 213 GLKAKIPLIGSGF 225 (336)
T ss_pred CCccCCeEEeccc
Confidence 5433566664433
No 456
>PF13941 MutL: MutL protein
Probab=35.34 E-value=7e+02 Score=29.25 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=79.4
Q ss_pred CCccEEEEEecChh-HHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCccEEEEcc-CCCCC---HHHHHHHHHh
Q 004541 85 LRSLKVLLVENDDS-TRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCLS---GVALLSKIMS 156 (746)
Q Consensus 85 ~~~lrVLVVDDd~~-~r~~L~~lL~~~G~~V~~A---~dG~EALe~L~~~~~~~DLVLlDi-MP~md---Glellr~IR~ 156 (746)
..++|+.++-=-+. +.+..++.-...|-+|..+ .-.++-|+.|.+ .+||+||+== -.+-+ .+..++.|..
T Consensus 74 aGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~--~~PDiILLaGGtDgG~~~~il~nA~~La~ 151 (457)
T PF13941_consen 74 AGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE--IRPDIILLAGGTDGGNKEVILHNAEMLAE 151 (457)
T ss_pred CCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc--cCCCEEEEeCCccCCchHHHHHHHHHHHh
Confidence 35688888774443 3455555555667777643 334566777776 7899999944 43333 3566777754
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHh-CCCCeEEeCCC-------CHHHHHHHHHHHHHHhc
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDFLVKPI-------RKNELKNLWQHVWRRCH 210 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~-aGaddyL~KPi-------~~~eL~~~L~~vlrr~~ 210 (746)
. ...+|||+--.....+.+.+.|. .|..-|++--| .++-.+.+|+++..+..
T Consensus 152 ~--~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~I 211 (457)
T PF13941_consen 152 A--NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHI 211 (457)
T ss_pred C--CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHH
Confidence 3 45688887766666777888888 66666666644 55667788887766543
No 457
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=35.31 E-value=1.7e+02 Score=31.98 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHh-cCCCccEEEE-cc-CCCC--CHHHHHHHHHhc
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILED-LTNHIDLVLT-EV-MPCL--SGVALLSKIMSH 157 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~--dG~EALe~L~~-~~~~~DLVLl-Di-MP~m--dGlellr~IR~~ 157 (746)
++...|+++||-.....++. +|. ....++... +-.+.++.+.+ ....-+++++ |. +|.. .|..+++.+++.
T Consensus 35 L~~aDvI~~edtr~t~~ll~-~~~-i~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~~ 112 (287)
T PRK14994 35 LQAVDLIAAEDTRHTGLLLQ-HFA-INARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREA 112 (287)
T ss_pred HHhCCEEEEeCCcchHHHHh-hcC-CCCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHHC
Confidence 34567899999877644332 221 122343332 34444443322 1234566666 99 9986 489999999753
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHhCCC--CeEE---eCCCCHHHHHHHHHHHH
Q 004541 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGA--VDFL---VKPIRKNELKNLWQHVW 206 (746)
Q Consensus 158 ~~~~~iPVI~LTa~~~~~~~~~al~aGa--ddyL---~KPi~~~eL~~~L~~vl 206 (746)
+++|.++-+....- ..+...|. +.|+ .=|-...+....|..++
T Consensus 113 ----gi~v~vIPGiSA~~--aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~ 160 (287)
T PRK14994 113 ----GIRVVPLPGPCAAI--TALSAAGLPSDRFCYEGFLPAKSKGRRDALKALE 160 (287)
T ss_pred ----CCCEEEeCCHHHHH--HHHHHcCCCCCcceEeEECCCCCchHHHHHHHHh
Confidence 68888888765433 33334443 3333 33433333344455444
No 458
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=35.20 E-value=2.1e+02 Score=32.52 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCC----CCHHHHHHHHHhccCCCCccEEEEecCC
Q 004541 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (746)
Q Consensus 98 ~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~----mdGlellr~IR~~~~~~~iPVI~LTa~~ 172 (746)
.--+.|...|...||+.+.. ...+|||++-. -.- ...+++++++|+. .++++|| +++..
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~--~p~~~vv-vgGc~ 74 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQ--NPTAKII-VTGCY 74 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhh--CCCcEEE-EECCc
Confidence 34567888888889886431 13579999996 332 2368888888654 3556555 45543
Q ss_pred CHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHH
Q 004541 173 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (746)
Q Consensus 173 ~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~v 205 (746)
......+++.....|++.-+-....|..+|...
T Consensus 75 a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 75 AQSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 333444555666677898888888887777643
No 459
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=35.19 E-value=1.2e+02 Score=35.09 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 120 GLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 120 G~EALe~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
.+.+..+++ ..+|+|.+|. -.. ..-++.+++||+. ++++|||+ ..-...+....+.++||+.+
T Consensus 226 ~~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 226 KERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 345554444 4699999999 432 4567888888764 46788876 44556778889999999876
No 460
>PRK09776 putative diguanylate cyclase; Provisional
Probab=35.15 E-value=1.4e+02 Score=37.80 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc--CCCC----CHHHHHHHHHhccCCCCccEEEEecC
Q 004541 100 RHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL----SGVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi--MP~m----dGlellr~IR~~~~~~~iPVI~LTa~ 171 (746)
.......|+..||.+.. +..+..-+..|.. -.+|.|=+|. +-++ ....+++.|.......++.|| ..+-
T Consensus 976 ~~~~~~~l~~~G~~~~lddfg~g~~~~~~l~~--~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-aegV 1052 (1092)
T PRK09776 976 ASRLVQKLRLAGCRVVLSDFGRGLSSFNYLKA--FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTI-AGPV 1052 (1092)
T ss_pred HHHHHHHHHHCCcEEEEcCCCCCchHHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEE-eccc
Confidence 33455667788998874 5577778888886 6799999995 3222 235556655433222345554 5677
Q ss_pred CCHHHHHHHHhCCCC----eEEeCCCCHHHHHHHHH
Q 004541 172 DSMGLVFKCLSKGAV----DFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 172 ~~~~~~~~al~aGad----dyL~KPi~~~eL~~~L~ 203 (746)
...+....+.+.|++ .|+.||...++|.+...
T Consensus 1053 Et~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~~~~ 1088 (1092)
T PRK09776 1053 ELPLVLDTLSGIGVDLAYGYAIARPQPLDLLLNSSY 1088 (1092)
T ss_pred CCHHHHHHHHHcCCCEEeccccCCCCcHHHHHhhhh
Confidence 777888889999986 36889999988876543
No 461
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.10 E-value=1.4e+02 Score=31.44 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCC-CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 111 G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~-mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
|+.-..-.+..++++++.+. --.+|++|+ --+ +.|++ .|.+. ..++|||+--+-.+.+++.++...|+++.
T Consensus 136 gw~~~~~~~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gv 208 (228)
T PRK04128 136 GWLEESSIKVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGV 208 (228)
T ss_pred CCeEcCCCCHHHHHHHHHHH--hCEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 44433455677888888763 236899999 544 47877 33222 24799999999999999999999999986
Q ss_pred Ee
Q 004541 189 LV 190 (746)
Q Consensus 189 L~ 190 (746)
|.
T Consensus 209 iv 210 (228)
T PRK04128 209 II 210 (228)
T ss_pred EE
Confidence 64
No 462
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=35.08 E-value=4.5e+02 Score=27.09 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=40.2
Q ss_pred ccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 134 ~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.|++|+-...+.-|.-+++.+. ..+|||+ +..... .+.+.. .+++.++-+.++|...|..++..
T Consensus 269 adi~v~ps~~e~~~~~~~Ea~a-----~g~PvI~-~~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLSEGFPNVLLEAMA-----CGLPVVA-TDVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCccccCCcHHHHHHh-----cCCCEEE-cCCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4666665422334566777772 4578876 333222 222322 56899999999999999988763
No 463
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.01 E-value=2.6e+02 Score=30.62 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=58.8
Q ss_pred EEEEEe--cChhHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 89 KVLLVE--NDDSTR---HVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 89 rVLVVD--Dd~~~r---~~L~~lL~~~G~~V~~A~dG~EALe~-------L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
+|+||- +.+... ..+..+|+..|+++.........+.. +......+|+||+ -+.||. +++..|.
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---lGGDGT-~L~aa~~ 82 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---VGGDGN-MLGAARV 82 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---ECCcHH-HHHHHHH
Confidence 577773 333333 45666777789988865543333210 0111124666665 366773 3444443
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
.. ...+|||-+-. |-.+||. .+.++++...|.+++..
T Consensus 83 ~~-~~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 83 LA-RYDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred hc-CCCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 22 23688886643 4456765 67889999999998764
No 464
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=34.98 E-value=2.4e+02 Score=31.34 Aligned_cols=63 Identities=22% Similarity=0.145 Sum_probs=40.9
Q ss_pred cEEEEEecChhHH----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDSTR----HVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~~r----~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
-+||||-|..... ..+...|+..|+.+..+. +..++++.++. ..+|+||- +-+.+-+++.+.+
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~Iia--iGGGs~~D~AK~v 99 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE--EGCDGVIA--VGGGSVLDTAKAI 99 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHHH
Confidence 4899998765433 467778887777666443 24456666665 67888875 4555556666655
No 465
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=34.88 E-value=3.1e+02 Score=28.17 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=50.9
Q ss_pred ECCHHHHHHHHHhcCCCccEEEEcc-CCC---------CCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHH---HHhC
Q 004541 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPC---------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK---CLSK 183 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~DLVLlDi-MP~---------mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~---al~a 183 (746)
-.+-.+.++.+.. ..+|.|++|+ =.. .+-.+++..++... .....+++=....+.....+ ++..
T Consensus 7 p~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~-~~~~~~~VRvn~~~~~~~~~Dl~~l~~ 83 (221)
T PF03328_consen 7 PANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR-AAGSEIIVRVNSLDSPHIERDLEALDA 83 (221)
T ss_dssp ESTSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT-TSSSEEEEE-SSTTCHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc-cccccceecCCCCCcchhhhhhhhccc
Confidence 3455666777765 7899999999 322 22334555554322 12245555555555555666 9999
Q ss_pred CCCeEEeCCC-CHHHHHHHHHHH
Q 004541 184 GAVDFLVKPI-RKNELKNLWQHV 205 (746)
Q Consensus 184 GaddyL~KPi-~~~eL~~~L~~v 205 (746)
|+++++.-=+ +.+++..++..+
T Consensus 84 g~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 84 GADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp TSSEEEETT--SHHHHHHHHHHH
T ss_pred CCCeeeccccCcHHHHHHHHHHH
Confidence 9999776655 456665555543
No 466
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.80 E-value=1.3e+02 Score=32.73 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCccEEEEec------CCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSS------LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa------~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
+++++.+|+.. ..+|||+||= +.......+|.++|++++|.--+.+++-......+.+
T Consensus 82 lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 467
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=34.78 E-value=1.7e+02 Score=33.01 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=41.6
Q ss_pred cEEEEEecChh----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~----~r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.|||||-|... ..+.+...|+..|+++..+. +..++++.+++ ..+|+||- .-+.+-+++.+.|
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~i 106 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA--SGADYLIA--IGGGSPQDTCKAI 106 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCChHHHHHHHHH
Confidence 58999988644 33457788888887766553 33567777776 68898875 4444555555543
No 468
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=34.77 E-value=72 Score=32.31 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCccEEEEcc-C-----CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHH
Q 004541 132 NHIDLVLTEV-M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (746)
Q Consensus 132 ~~~DLVLlDi-M-----P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~a 180 (746)
..|||||+|= + --++--++++.|..++ ..+ =|+||++..++.+.+.
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp--~~~-evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRP--ESL-EVVLTGRNAPEELIEA 146 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS---TT--EEEEE-SS--HHHHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC--CCe-EEEEECCCCCHHHHHh
Confidence 6899999994 2 2356678888886543 333 4568998877665554
No 469
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=34.68 E-value=2.7e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=42.1
Q ss_pred cEEEEEecChh----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHH
Q 004541 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (746)
Q Consensus 88 lrVLVVDDd~~----~r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~I 154 (746)
.|+|||-|... ..+.+...|+..|+++..+. +..++++.++. ..+|+||- .-+.+-+++.+.|
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~~D~AKai 99 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE--GGCDVIIA--LGGGSPIDTAKAI 99 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHHH
Confidence 48999987643 23557788888888766543 25567777776 67898875 4455556666655
No 470
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.65 E-value=3.9e+02 Score=28.20 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=60.9
Q ss_pred ccEEEEEecChhHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCcc
Q 004541 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (746)
Q Consensus 87 ~lrVLVVDDd~~~r~~L~~lL~~~G~--~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iP 164 (746)
.++++||.+-+. ...+..+++..+. .|....-.++..+++.. .|++|+-...+.-|+.+++.+. ..+|
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~E~~~~~~lEAma-----~G~P 292 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLYEGLPLVLIEAQA-----SGLP 292 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccccCCCHHHHHHHH-----hCCC
Confidence 467777766543 2344555544443 23333323444455543 5666654411334677777773 4688
Q ss_pred EEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 165 VI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr 208 (746)
||+ |...... +.+..+ ..|+..+-++++|.++|.+++..
T Consensus 293 vI~-s~~~~~~---~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 293 CIL-SDTITKE---VDLTDL-VKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EEE-EcCCchh---hhhccC-ccEEeCCCCHHHHHHHHHHHHhC
Confidence 876 4333222 223333 45777777899999999998874
No 471
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=34.56 E-value=3.1e+02 Score=31.09 Aligned_cols=88 Identities=18% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEc-c-CCCCC----HHHHHHHHHhccCCCCccEEEEecC
Q 004541 100 RHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTE-V-MPCLS----GVALLSKIMSHKTRKNLPVIMMSSL 171 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlD-i-MP~md----Glellr~IR~~~~~~~iPVI~LTa~ 171 (746)
-+.|+.+-+.+...++ -+-+.++|...+. ..+|.|++- . -..++ .++++..|++. . .+|||+-.+.
T Consensus 225 w~~i~~ir~~~~~pviiKgV~~~eda~~a~~---~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~--~-~~~vi~dGGI 298 (361)
T cd04736 225 WQDLRWLRDLWPHKLLVKGIVTAEDAKRCIE---LGADGVILSNHGGRQLDDAIAPIEALAEIVAA--T-YKPVLIDSGI 298 (361)
T ss_pred HHHHHHHHHhCCCCEEEecCCCHHHHHHHHH---CCcCEEEECCCCcCCCcCCccHHHHHHHHHHH--h-CCeEEEeCCC
Confidence 3455555555654443 4678898888876 357776543 3 44444 38888888653 2 4899999999
Q ss_pred CCHHHHHHHHhCCCCeEE-eCCC
Q 004541 172 DSMGLVFKCLSKGAVDFL-VKPI 193 (746)
Q Consensus 172 ~~~~~~~~al~aGaddyL-~KPi 193 (746)
....++.+++.+||+.++ -.|+
T Consensus 299 r~g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 299 RRGSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred CCHHHHHHHHHcCCCEEEECHHH
Confidence 999999999999999864 4465
No 472
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.48 E-value=1.9e+02 Score=29.44 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEec
Q 004541 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~A~dG------~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa 170 (746)
+...+...++..||.+...... .++++.+.. ..+|.||+.. .+. -..++++.. ..+|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT---SAQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC---hHHHHHHhc----CCCCEEEEec
Confidence 3455666677889998754421 245666665 6789888755 543 234566532 4689998854
No 473
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.42 E-value=3.9e+02 Score=28.69 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEE
Q 004541 98 STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (746)
Q Consensus 98 ~~r~~L~~lL~~~G~~V~~-------A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~ 167 (746)
.....++..++..|++|+. ..+....+..+++ ..+|+||+...+ .+...+++.+++.. -..+++.
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~--~~~d~vi~~~~~-~~~~~~~~~~~~~g--~~~~~~~ 223 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN--SKPDLIVISALA-ADGGNLVRQLRELG--YNGLIVG 223 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEECCcc-hhHHHHHHHHHHcC--CCCceec
Confidence 4556778888888998763 2355677777776 679999987622 35567888887654 2445543
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=34.42 E-value=2.8e+02 Score=31.18 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCccEEEEEecChhHHHHHHHHHHhC----CCEEEEEC---CH----HHHHHHHHhcCCCccEEEEcc---CCC-CCHHH
Q 004541 85 LRSLKVLLVENDDSTRHVVAALLRNC----GYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV---MPC-LSGVA 149 (746)
Q Consensus 85 ~~~lrVLVVDDd~~~r~~L~~lL~~~----G~~V~~A~---dG----~EALe~L~~~~~~~DLVLlDi---MP~-mdGle 149 (746)
..+.+|||+--|- +|....+.|+.| |..|+.-. |. -+|++..+. ..+|+||+|. |.. .+=++
T Consensus 165 ~~g~~VllaA~DT-FRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Aka--r~~DvvliDTAGRLhnk~nLM~ 241 (340)
T COG0552 165 QQGKSVLLAAGDT-FRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKA--RGIDVVLIDTAGRLHNKKNLMD 241 (340)
T ss_pred HCCCeEEEEecch-HHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHH--cCCCEEEEeCcccccCchhHHH
Confidence 4678999987764 566666666654 77887522 22 245555555 7899999997 654 23344
Q ss_pred HHHHHH
Q 004541 150 LLSKIM 155 (746)
Q Consensus 150 llr~IR 155 (746)
=+++|+
T Consensus 242 EL~KI~ 247 (340)
T COG0552 242 ELKKIV 247 (340)
T ss_pred HHHHHH
Confidence 455554
No 475
>PLN02476 O-methyltransferase
Probab=34.28 E-value=1.2e+02 Score=33.06 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=41.9
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCccEEEEcc
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~--V~-~A~dG~EALe~L~~~--~~~~DLVLlDi 141 (746)
+|.-+|-++...+..+..+++.|+. |. ...+..+.|..+... ...||+||+|.
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC
Confidence 6899999999999999999999884 44 456777777665321 25799999998
No 476
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.26 E-value=1.3e+02 Score=31.38 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=50.9
Q ss_pred ECCHHHHHHHHHhcCCCcc-EEEEcc-CCC-CC--HHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeC
Q 004541 117 ATNGLQAWKILEDLTNHID-LVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 117 A~dG~EALe~L~~~~~~~D-LVLlDi-MP~-md--Glellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~K 191 (746)
..+..+.++.+.+ ..+| |+|+|+ --+ .. -++++++|++. ..+||++--+-.+.+++.+++..|++.++.=
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 4477787888776 3454 778887 321 12 26788888654 3589999999999999999999998866543
No 477
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=34.10 E-value=2.5e+02 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEE
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL 189 (746)
++.+.+|++.- ..++|||...+-.+.+++.+++.+||+.+.
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67788886542 247999999999999999999999998654
No 478
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=34.03 E-value=4e+02 Score=28.56 Aligned_cols=109 Identities=9% Similarity=0.042 Sum_probs=63.8
Q ss_pred CCCccEEEEEecChhHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 84 ~~~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~d-------G~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
++.+.+|||-=..+ -...+...|+..|.+++.+.. ..+....+.+ -..||.||+= --+|++.+-.+..
T Consensus 15 ~l~g~~IlvTRp~~-q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~-l~~~d~iift---S~NAV~~~~~~~~ 89 (266)
T PRK08811 15 ADAAWTLISLRPSG-EHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQ-ALAAPIVVFT---SPAAVRAAHRLLP 89 (266)
T ss_pred CCCCCEEEEeCCHH-HHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhh-cccCCEEEEE---CHHHHHHHHHHhc
Confidence 45677887755444 557788999999998885543 1222233332 1357766552 2356655433322
Q ss_pred ccCCCCccEEEEecCCCHHHHHHHHhCCCC-eEEeCCCCHHHHHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAV-DFLVKPIRKNELKNL 201 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~~~~al~aGad-dyL~KPi~~~eL~~~ 201 (746)
......++++++-. .....+.+.|+. +++.+-++.+.|.+.
T Consensus 90 ~~~~~~~~~~AVG~----~TA~aL~~~G~~~~~~P~~~~se~Ll~l 131 (266)
T PRK08811 90 LQRPARAHWLSVGE----GTARALQACGIDEVVRPTRMDSEGLLAL 131 (266)
T ss_pred ccCccCCeEEEECH----HHHHHHHHcCCCceeCCCCCCcHHHHhC
Confidence 22235677766643 334445567875 566677888888876
No 479
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=33.88 E-value=1.5e+02 Score=34.87 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred CccEEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEcc-CCCC-----CHHHHHHHHHhccC
Q 004541 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-----SGVALLSKIMSHKT 159 (746)
Q Consensus 86 ~~lrVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDi-MP~m-----dGlellr~IR~~~~ 159 (746)
...+|++|+-|.. +||.... +|.+-+ ....+|++=+ -.++ +|++- |++...
T Consensus 447 P~~~V~~veGDsa-----------FGfSaME-------~ET~vR--~~Lpvv~vV~NN~Giyg~d~~~~~~---I~e~~~ 503 (571)
T KOG1185|consen 447 PDRKVVCVEGDSA-----------FGFSAME-------LETFVR--YKLPVVIVVGNNNGIYGLDDDGWKQ---ISEQDP 503 (571)
T ss_pred CCCeEEEEecCcc-----------cCcchhh-------HHHHHH--hcCCeEEEEecCCcccccCcccHHH---HhhcCc
Confidence 3568999998865 4664332 222333 4455555543 3333 45544 444445
Q ss_pred CCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004541 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (746)
Q Consensus 160 ~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlrr~ 209 (746)
....|+..+.++...+.+ +...|+.+|+.+ ++++|...+++.++..
T Consensus 504 ~~~~p~~~l~~~~rY~~v--~ka~G~kG~~v~--t~~el~~~l~~a~q~~ 549 (571)
T KOG1185|consen 504 TLDLPPTALLANTRYDKV--AKAFGGKGYFVS--TVEELLAALQQACQDT 549 (571)
T ss_pred ccCCCcccccccccHHHH--HHHcCCCceeeC--CHHHHHHHHHHHHhcC
Confidence 567899999988866554 556789999999 8899999999988764
No 480
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.83 E-value=2e+02 Score=30.79 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeE
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddy 188 (746)
++.+++|++.- ..++|||...+-.+.+++.+++.+||+.+
T Consensus 230 ~~~v~~i~~~~-~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARL-QLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776532 12799999999999999999999998754
No 481
>PRK01362 putative translaldolase; Provisional
Probab=33.79 E-value=2.7e+02 Score=29.11 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=58.6
Q ss_pred hhHHHHHH--HHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEccC--CCCCHHHHHHHHHhccCCCC-ccEEEEe
Q 004541 97 DSTRHVVA--ALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVM--PCLSGVALLSKIMSHKTRKN-LPVIMMS 169 (746)
Q Consensus 97 ~~~r~~L~--~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiM--P~mdGlellr~IR~~~~~~~-iPVI~LT 169 (746)
|.+...+. ..|...|+.|. .+.+..+|+...+. +..|=-.++.-| .+.||+++++.+++.-.... -.-|+..
T Consensus 85 P~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a-Ga~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaA 163 (214)
T PRK01362 85 PMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAAKA-GATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAA 163 (214)
T ss_pred CCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHHhc-CCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 44444433 34677787654 78899999988874 333322233323 46789999998865432211 2344556
Q ss_pred cCCCHHHHHHHHhCCCCeEEeCC
Q 004541 170 SLDSMGLVFKCLSKGAVDFLVKP 192 (746)
Q Consensus 170 a~~~~~~~~~al~aGaddyL~KP 192 (746)
+......+.++..+|++ +++=|
T Consensus 164 S~r~~~~v~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 164 SVRHPMHVLEAALAGAD-IATIP 185 (214)
T ss_pred ecCCHHHHHHHHHcCCC-EEecC
Confidence 66677888899999998 55444
No 482
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=33.76 E-value=5.1e+02 Score=26.51 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=41.1
Q ss_pred ccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004541 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (746)
Q Consensus 134 ~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL~~~L~~vlr 207 (746)
.|++|+=. . +.-|.-+++.+. ..+|||+ |.... ..+.+..+..+++..+-++++|.+.|..++.
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~-----~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMA-----MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHH-----cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 35555433 2 223566777762 4578876 33322 2344555678899999999999999998764
No 483
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=33.62 E-value=1.9e+02 Score=28.60 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=34.5
Q ss_pred HHHHhcCCCccEEEEcc---C-C-C----CCH-HHHHHHHHhccCCCCccEEEEecCCCHHHHHHH-HhCCCCeEE--eC
Q 004541 125 KILEDLTNHIDLVLTEV---M-P-C----LSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC-LSKGAVDFL--VK 191 (746)
Q Consensus 125 e~L~~~~~~~DLVLlDi---M-P-~----mdG-lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~a-l~aGaddyL--~K 191 (746)
+++++ ..+++||+|+ + + . ..| .++++.|++. .++++++|........... ...|...+. .|
T Consensus 18 ~~~~~--~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~----g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~K 91 (170)
T TIGR01668 18 DLLKK--VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAA----GRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVK 91 (170)
T ss_pred HHHHH--CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHc----CCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCC
Confidence 34444 5677777775 2 1 1 122 4677777643 4789999987632333332 245655443 36
Q ss_pred CC
Q 004541 192 PI 193 (746)
Q Consensus 192 Pi 193 (746)
|-
T Consensus 92 P~ 93 (170)
T TIGR01668 92 PP 93 (170)
T ss_pred CC
Confidence 73
No 484
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.59 E-value=1.7e+02 Score=30.50 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCEEEEECCH--HHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEec
Q 004541 99 TRHVVAALLRNCGYEVTEATNG--LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~A~dG--~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa 170 (746)
+...+.+.++..||.+..+... .+.++.+.. ..+|-||+-..+.. .+.+++++. ..+|||++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgiii~~~~~~--~~~~~~~~~----~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVS--ALVDGFIVYGVPRD--DPLVAALLR----RGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHh--cCCCEEEEeCCCCC--hHHHHHHHH----cCCCEEEEec
Confidence 4455677788889998865543 466766665 67887777332111 245666643 4589998854
No 485
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=33.53 E-value=5.2e+02 Score=26.11 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=49.9
Q ss_pred cEEEEEecC-h---hHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 88 LKVLLVEND-D---STRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 88 lrVLVVDDd-~---~~r~~L~~lL~~~G~~V~~A-------~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
.+|.||-++ . .....+...++..|+++... .+....+..+.. ..+|+||+-.- ......+++.+++
T Consensus 136 ~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~--~~~~~vi~~~~-~~~~~~~~~~~~~ 212 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA--AGPDAVFLAGY-GGDAALFLKQARE 212 (298)
T ss_pred CEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh--cCCCEEEEccc-cchHHHHHHHHHH
Confidence 356666433 2 33455666777778776422 245666666665 46788877442 2456778888865
Q ss_pred ccCCCCccEEEEecCCCHHH
Q 004541 157 HKTRKNLPVIMMSSLDSMGL 176 (746)
Q Consensus 157 ~~~~~~iPVI~LTa~~~~~~ 176 (746)
.. .+++||.+........
T Consensus 213 ~g--~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 213 AG--LKVPIVGGDGAAAPAL 230 (298)
T ss_pred cC--CCCcEEecCccCCHHH
Confidence 44 3677776666555443
No 486
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=33.48 E-value=1.5e+02 Score=32.91 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCC------eEEeC-CCCHHHHHHHHHHHHHHhcc
Q 004541 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV------DFLVK-PIRKNELKNLWQHVWRRCHS 211 (746)
Q Consensus 148 lellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGad------dyL~K-Pi~~~eL~~~L~~vlrr~~~ 211 (746)
+.++++++++. ..++|||-+.+-.+.++..+.+.+||. .++.+ |.-..++..-|.++++....
T Consensus 228 l~~v~~l~~~~-~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~ 297 (310)
T COG0167 228 LRVVAELYKRL-GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGF 297 (310)
T ss_pred HHHHHHHHHhc-CCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCC
Confidence 45666776543 357999999999999999999999986 56777 98899999999999887543
No 487
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.38 E-value=2.1e+02 Score=28.89 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEec
Q 004541 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~~A~d---G~---EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LTa 170 (746)
....+.+.++..||.+..... .. ++++.+.. ..+|.||+.. .+. ..++++++++ ..+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~ 87 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEec
Confidence 345566777788999886532 23 34455544 6799998865 432 2345666643 4689988854
No 488
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.32 E-value=2.1e+02 Score=30.40 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred CccEEEEE------ecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHh
Q 004541 86 RSLKVLLV------ENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (746)
Q Consensus 86 ~~lrVLVV------DDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~ 156 (746)
...+|++| +|...........|+.+|++|......++.++.|.. .|+|++ ++-+-+.+++.++.
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~----ad~I~v---~GGnt~~l~~~l~~ 99 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN----AEAIFV---GGGNTFQLLKQLYE 99 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc----CCEEEE---CCccHHHHHHHHHH
Confidence 34567776 344444567888899999999888877777777754 566665 66666777776654
No 489
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.19 E-value=1.7e+02 Score=29.82 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=46.9
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCccEEEEccCCC-CCHH------HHHHHHHhccCCC
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPC-LSGV------ALLSKIMSHKTRK 161 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~A~dG~EALe~L~~~~~~~DLVLlDiMP~-mdGl------ellr~IR~~~~~~ 161 (746)
.|+|||----+...+.+.|+..|+++....+..+ + ..+|.||+-=... .+-. .+.+.|+... ..
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~----l----~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~-~~ 71 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEE----I----LAADGVILPGVGAFPDAMANLRERGLDEVIKEAV-AS 71 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHH----h----ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHH-HC
Confidence 3889999999999999999999999998876532 2 3588888721211 0111 2344454321 24
Q ss_pred CccEEEEec
Q 004541 162 NLPVIMMSS 170 (746)
Q Consensus 162 ~iPVI~LTa 170 (746)
.+||+.+..
T Consensus 72 ~~pvlGIC~ 80 (205)
T PRK13141 72 GKPLLGICL 80 (205)
T ss_pred CCcEEEECH
Confidence 578877764
No 490
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.17 E-value=5.3e+02 Score=29.25 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCCCccEEEEcc-C-------CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEe
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEV-M-------PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDi-M-------P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~ 190 (746)
+..+-++.+.+ ...|+|.++. . +.-+-..+.+.+++ .++|||+ ..-...+...+++++|+|.++.
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45666677766 6789999953 2 22245566666643 2689877 4556677888899999998754
No 491
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=33.06 E-value=2.2e+02 Score=31.67 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=43.0
Q ss_pred cEEEEEecChh-HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHH
Q 004541 88 LKVLLVENDDS-TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (746)
Q Consensus 88 lrVLVVDDd~~-~r~~L~~lL~~~G~~V~~A~---------dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR 155 (746)
.|+|||-|... ....+...|+..|+.+..+. +..++++++++ ..+|+||- +-+.+-+++.+.+.
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGs~~D~aK~ia 97 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLRE--FGPDAVLA--VGGGSVLDTAKALA 97 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHh--cCcCEEEE--eCCcHHHHHHHHHH
Confidence 48899887655 45667888888887665442 35567777776 67898874 45555566666553
No 492
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.03 E-value=4.4e+02 Score=27.38 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCcc-EEEEcc-C---CCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhC-CCCeEEe
Q 004541 122 QAWKILEDLTNHID-LVLTEV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLV 190 (746)
Q Consensus 122 EALe~L~~~~~~~D-LVLlDi-M---P~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~a-GaddyL~ 190 (746)
+.++.+.+ ..+| |+++++ - -..-.+++++++++. ..+|||+.-+..+.+++.++++. |++.++.
T Consensus 153 ~~~~~l~~--~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEE--LGAGEILLTSMDRDGTKKGYDLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHH--CCCCEEEEeccCCCCCCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 33344444 4566 555444 1 112247888888653 47999999888899999999987 8987654
No 493
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.02 E-value=2.2e+02 Score=28.77 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCccEEEEcc-CCCCCHHHHHHHHHhccCCCCccEEEEe
Q 004541 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (746)
Q Consensus 100 r~~L~~lL~~~G~~V~~A~dG------~EALe~L~~~~~~~DLVLlDi-MP~mdGlellr~IR~~~~~~~iPVI~LT 169 (746)
...+.+.++..||.+..+... .++++.+.. ..+|-||+.. .+. -+++..++. ..+|||++-
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~----~~ipvv~~~ 85 (268)
T cd01575 18 LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLS--RRPAGLILTGLEHT---ERTRQLLRA----AGIPVVEIM 85 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHH--cCCCEEEEeCCCCC---HHHHHHHHh----cCCCEEEEe
Confidence 355667778889998865332 345666655 6789887755 433 344555532 368999884
No 494
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.93 E-value=4.8e+02 Score=27.13 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCccEEEEecCCCHHHHHHHHhCCCCeEEeCCCCHHHH
Q 004541 119 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198 (746)
Q Consensus 119 dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~iPVI~LTa~~~~~~~~~al~aGaddyL~KPi~~~eL 198 (746)
+.++..+++.. .|++|+-...+.-|..+++.+. ..+|||+.-... ..+.+..+-.+++..|.+.++|
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~~e~~~~~~lEa~a-----~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~~~~~l 322 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSRTETFGLVVLEAMA-----SGLPVVAPDAGG----PADIVTDGENGLLVEPGDAEAF 322 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcccccCCcHHHHHHH-----cCCCEEEcCCCC----chhhhcCCcceEEcCCCCHHHH
Confidence 44455555543 4666654322334566777762 457887543222 2344555667899999999999
Q ss_pred HHHHHHHHH
Q 004541 199 KNLWQHVWR 207 (746)
Q Consensus 199 ~~~L~~vlr 207 (746)
...|..++.
T Consensus 323 ~~~i~~l~~ 331 (364)
T cd03814 323 AAALAALLA 331 (364)
T ss_pred HHHHHHHHc
Confidence 999988765
No 495
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=32.74 E-value=4e+02 Score=32.88 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCccEEEEcc--CCCC-CHHHHHHHHHhccCCCCccEEEEecCCCH
Q 004541 99 TRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 99 ~r~~L~~lL~~~G~~V~-~A~dG~EALe~L~~~~~~~DLVLlDi--MP~m-dGlellr~IR~~~~~~~iPVI~LTa~~~~ 174 (746)
.+..|..+-+.+|+++. .+.+.+|+-..+.. ..+||=+.. +-.. -.++.+.+|+..- ..++.+|.-|+-...
T Consensus 148 ~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~---ga~iiGINnRdL~tf~vd~~~t~~L~~~i-p~~~~~VsESGI~~~ 223 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVETHTREEIERAIAA---GAKVIGINARNLKDLKVDVNKYNELAADL-PDDVIKVAESGVFGA 223 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC---CCCEEEEeCCCCccceeCHHHHHHHHhhC-CCCcEEEEcCCCCCH
Confidence 45556666677899887 79999998777763 466675554 4322 1355666665332 245566777888999
Q ss_pred HHHHHHHhCCCCeEEeC
Q 004541 175 GLVFKCLSKGAVDFLVK 191 (746)
Q Consensus 175 ~~~~~al~aGaddyL~K 191 (746)
+++.++...|++.+|+=
T Consensus 224 ~d~~~l~~~G~davLIG 240 (695)
T PRK13802 224 VEVEDYARAGADAVLVG 240 (695)
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999999999874
No 496
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=32.63 E-value=52 Score=38.05 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=28.3
Q ss_pred cccHHHHHHHHhCCccccCcccceeecCcceEEEEEEeecCC
Q 004541 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQM 67 (746)
Q Consensus 26 ~~AIv~~Lv~Lmgg~il~~G~Ig~~S~~G~Gs~ftv~lpl~~ 67 (746)
.++|++++++.++|. |.+.|.+|.|++|++.+|...
T Consensus 526 GL~i~~~iv~~~~G~------i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 526 GLNIMQERAERLGGT------LTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred CHHHHHHHHHHcCCE------EEEEECCCCcEEEEEEECCCC
Confidence 478889888876665 555778888999999998753
No 497
>PRK10551 phage resistance protein; Provisional
Probab=32.50 E-value=1.7e+02 Score=34.55 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCccEEEEcc--CCCC--C--HHHHHHHHHhccCCCCccEEEEecCCCH
Q 004541 103 VAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL--S--GVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (746)
Q Consensus 103 L~~lL~~~G~~V~~--A~dG~EALe~L~~~~~~~DLVLlDi--MP~m--d--Glellr~IR~~~~~~~iPVI~LTa~~~~ 174 (746)
+...|+..||.+.. +..|...+..|.. -++|.|=+|- +-.+ + .-.+++.|......-++.| +..+-...
T Consensus 402 ~l~~Lr~~G~~ialDDFGtg~ssl~~L~~--l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~v-VAEGVEt~ 478 (518)
T PRK10551 402 LFAWLHSQGIEIAIDDFGTGHSALIYLER--FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLT-VAEGVETP 478 (518)
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEE-EEEeCCcH
Confidence 44568888998874 6778888999987 7899999995 3222 1 2234444433222234444 45777778
Q ss_pred HHHHHHHhCCCC----eEEeCCCCHHHHHHHHH
Q 004541 175 GLVFKCLSKGAV----DFLVKPIRKNELKNLWQ 203 (746)
Q Consensus 175 ~~~~~al~aGad----dyL~KPi~~~eL~~~L~ 203 (746)
+....+.+.|++ .|+.||...++|...++
T Consensus 479 ~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l~ 511 (518)
T PRK10551 479 EQARWLRERGVNFLQGYWISRPLPLEDFVRWLK 511 (518)
T ss_pred HHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHh
Confidence 888888899985 35789999999877553
No 498
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.50 E-value=6.3e+02 Score=28.94 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=61.4
Q ss_pred ccEEEEEecC-hhHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCccEEEEccCCCCCHHHHHHHHHhccCCCCc
Q 004541 87 SLKVLLVEND-DSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (746)
Q Consensus 87 ~lrVLVVDDd-~~~r~~L~~lL~~~G~~V~--~A~dG~EALe~L~~~~~~~DLVLlDiMP~mdGlellr~IR~~~~~~~i 163 (746)
.++++||-+- +.....+..+.+..+-.+. ...+.+.+-.++. ..|++|+=-.-+--|+-+++.+. ..+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~~E~~gl~~lEAma-----~G~ 381 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSRFEPCGLTQLYALR-----YGT 381 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCCCCCchHHHHHHHH-----CCC
Confidence 4566666653 3345556666665554433 2223332323343 35666663333445677777763 235
Q ss_pred cEEEEecCCCHHHHHHHHhCC------CCeEEeCCCCHHHHHHHHHHHHHH
Q 004541 164 PVIMMSSLDSMGLVFKCLSKG------AVDFLVKPIRKNELKNLWQHVWRR 208 (746)
Q Consensus 164 PVI~LTa~~~~~~~~~al~aG------addyL~KPi~~~eL~~~L~~vlrr 208 (746)
|+|+ +..... .+.+..| ..+|+..|-++++|..+|.+++..
T Consensus 382 p~V~-~~~gG~---~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 382 LPIV-RRTGGL---ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALEL 428 (466)
T ss_pred CEEE-eCCCCc---cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 6665 332221 1222333 678999999999999999988764
No 499
>PRK14967 putative methyltransferase; Provisional
Probab=32.50 E-value=5.6e+02 Score=26.21 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=34.7
Q ss_pred EEEEEecChhHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCccEEEEcc
Q 004541 89 KVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLVLTEV 141 (746)
Q Consensus 89 rVLVVDDd~~~r~~L~~lL~~~G~~V~~-A~dG~EALe~L~~~~~~~DLVLlDi 141 (746)
+|..||-++......+..++..+..+.. ..|..+ .+.. ..||+||++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 7999999999888888888777765543 334333 3333 6799999984
No 500
>PRK08005 epimerase; Validated
Probab=32.36 E-value=1.6e+02 Score=30.82 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCccEEEEcc-CCCCCHHH----HHHHHHhccCC-CCccEEEEecC
Q 004541 101 HVVAALLRNCGYEVTEATN---GLQAWKILEDLTNHIDLVLTEV-MPCLSGVA----LLSKIMSHKTR-KNLPVIMMSSL 171 (746)
Q Consensus 101 ~~L~~lL~~~G~~V~~A~d---G~EALe~L~~~~~~~DLVLlDi-MP~mdGle----llr~IR~~~~~-~~iPVI~LTa~ 171 (746)
..+...+++.|+.+-.|=+ ..+.++.+. ...|+|++=. -||..|-. .+++|++.... ... -|-+=+-
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l---~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~-~I~VDGG 171 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLA---LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA-ECWADGG 171 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHH---HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC-CEEEECC
Confidence 3455667778887665433 333333332 3588888866 79887743 33455542221 222 3777787
Q ss_pred CCHHHHHHHHhCCCCeEEe
Q 004541 172 DSMGLVFKCLSKGAVDFLV 190 (746)
Q Consensus 172 ~~~~~~~~al~aGaddyL~ 190 (746)
-..+.+.++.++||+-|+.
T Consensus 172 I~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 172 ITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 8888999999999996644
Done!