Query 004542
Match_columns 746
No_of_seqs 333 out of 2258
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 17:58:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004542.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1849-1853//hhsearch_pdb/004542hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 1.0 1 1 259.9 23.0 256 386-727 15-308 (436)
2 3stj_A Protease DEGQ; serine p 1.0 1 1 258.3 19.4 256 386-727 15-308 (345)
3 3pv2_A DEGQ; trypsin fold, PDZ 1.0 1 1 257.7 15.6 255 386-727 21-327 (451)
4 4fln_A Protease DO-like 2, chl 1.0 1 1 249.8 19.4 237 392-715 45-309 (539)
5 1ky9_A Protease DO, DEGP, HTRA 1.0 1 1 248.6 23.0 235 406-726 86-330 (448)
6 3sti_A Protease DEGQ; serine p 1.0 1 1 240.0 18.7 193 386-664 15-237 (245)
7 1te0_A Protease DEGS; two doma 1.0 1 1 239.7 20.8 254 386-726 11-288 (318)
8 3qo6_A Protease DO-like 1, chl 1.0 1 1 238.9 19.9 253 388-727 21-307 (348)
9 1y8t_A Hypothetical protein RV 1.0 1 1 228.5 23.1 264 387-727 9-287 (324)
10 1lcy_A HTRA2 serine protease; 1.0 1 1 227.4 12.1 249 387-726 18-300 (325)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=1.00 E-value=1 Score=259.88 Aligned_cols=256 Identities=26% Similarity=0.420 Sum_probs=199.3
Q ss_pred CHHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEEE
Q ss_conf 9067875058459999689----------------------------835799999089-77997353358877863010
Q 004542 386 SPLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTV 436 (746)
Q Consensus 386 ~p~~i~ka~~SVV~V~~g~----------------------------~~wGSGviVs~~-GlILTNaHVVep~~~~~t~~ 436 (746)
...+++++.+|||.|.+.. .++||||+|+++ ||||||+||++
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~--------- 85 (436)
T 4a8c_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN--------- 85 (436)
T ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC---------
T ss_conf 99999863794799999875125666760556641555544557767547899999899898998879919---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 48866645578888787987754223446899999853466411000000333457833699997489974158559996
Q 004542 437 SGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVY 516 (746)
Q Consensus 437 ~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~ 516 (746)
+ ...+.|++.+++. ++|++++
T Consensus 86 -~-------------------------------------------------------a~~i~V~~~dg~~---~~a~vv~ 106 (436)
T 4a8c_A 86 -Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG 106 (436)
T ss_pred -C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE
T ss_conf -9-------------------------------------------------------9889999579989---9999999
Q ss_pred ECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2489981699998458999521456999-999999199990288889989998056569952442268877766444688
Q 004542 517 VCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNS 595 (746)
Q Consensus 517 v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~ 595 (746)
.|+.+||||||++. +..+++++++++ .+++|++|+++|| |+++..+++.|+|++..+... ...
T Consensus 107 -~d~~~DlAllkv~~-~~~l~~~~l~~s~~~~~G~~v~aiG~-----P~g~~~~vt~G~vs~~~r~~~---------~~~ 170 (436)
T 4a8c_A 107 -SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGN-----PFGLGQTATSGIVSALGRSGL---------NLE 170 (436)
T ss_pred -ECCCCCEEEEEECC-CCCCCEEECCCCCCCCCCCEEEEEEC-----CCCCCCCEEEEEEEEECCCCC---------CCC
T ss_conf -74888989999347-78895576167354777988999976-----788786277779964224655---------777
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCC--HH-CCCCC
Q ss_conf 8671899755446898777210279279999940026899965672279970457999999999606620--11-14788
Q 004542 596 AYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVS--LL-RKLDE 672 (746)
Q Consensus 596 ~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d~~--~l-~~l~~ 672 (746)
.+..+|||||++++|+|||||||.+|+||||+++.....++. .+++|+||++.++++++++.+.+.+. .+ -....
T Consensus 171 ~~~~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~--~g~gfaIP~~~~~~~~~~l~~~g~v~r~~lGv~~~~ 248 (436)
T 4a8c_A 171 GLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGS--VGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE 248 (436)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC--EEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 746879992752898872760278977999971101688972--357888866889999999874454522557557525
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8801012445349999998999999984---4344-65-467752367889999999742
Q 004542 673 PNKHLASVWALMPPLSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLKH 727 (746)
Q Consensus 673 ~~~~i~~VW~L~~~~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~~ 727 (746)
.++.++....|.......+..+.|+.|+ ++++ |. .+.+|.++..+-+.+..+...
T Consensus 249 ~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~ 308 (436)
T 4a8c_A 249 MSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATT 308 (436)
T ss_pred CCHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC
T ss_conf 688999970999886269999789995887899999899998999988999999999725
No 2
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=258.29 Aligned_cols=256 Identities=27% Similarity=0.421 Sum_probs=197.0
Q ss_pred CHHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEEE
Q ss_conf 9067875058459999689----------------------------835799999089-77997353358877863010
Q 004542 386 SPLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTV 436 (746)
Q Consensus 386 ~p~~i~ka~~SVV~V~~g~----------------------------~~wGSGviVs~~-GlILTNaHVVep~~~~~t~~ 436 (746)
...+++++.+|||.|.+.. .++||||+|+++ ||||||+||++.
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~~-------- 86 (345)
T 3stj_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQ-------- 86 (345)
T ss_dssp SHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHTT--------
T ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHCC--------
T ss_conf 999998738957999998752256667515566425556544576665269999998997989977699499--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 48866645578888787987754223446899999853466411000000333457833699997489974158559996
Q 004542 437 SGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVY 516 (746)
Q Consensus 437 ~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~ 516 (746)
...+.|++.+++. +++++++
T Consensus 87 ---------------------------------------------------------~~~i~V~~~dg~~---~~a~vv~ 106 (345)
T 3stj_A 87 ---------------------------------------------------------AQKISIQLNDGRE---FDAKLIG 106 (345)
T ss_dssp ---------------------------------------------------------EEEEEEECTTSCE---EEEEEEE
T ss_pred ---------------------------------------------------------CCEEEEEECCCCE---EEEEEEE
T ss_conf ---------------------------------------------------------9889999689969---9999999
Q ss_pred ECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2489981699998458999521456999-999999199990288889989998056569952442268877766444688
Q 004542 517 VCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNS 595 (746)
Q Consensus 517 v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~ 595 (746)
.|+.+|||||+++. +..++++.+.++ .++.|++|+++|| |++...+++.|+|++..+.... ..
T Consensus 107 -~d~~~DlAlLkv~~-~~~~~~~~l~~s~~~~~G~~V~aiG~-----p~g~~~~vt~G~Vs~~~~~~~~---------~~ 170 (345)
T 3stj_A 107 -SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGN-----PFGLGQTATSGIVSALGRSGLN---------LE 170 (345)
T ss_dssp -EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTBEEEEEEC-----GGGCSCEEEEEEEEEEEECCSS---------SS
T ss_pred -ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEEC-----CCCCCCCEEEEEEEEECCCCCC---------CC
T ss_conf -86999989999756-67884476158455787999999987-----8887871776699563246658---------77
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCC--HH-CCCCC
Q ss_conf 8671899755446898777210279279999940026899965672279970457999999999606620--11-14788
Q 004542 596 AYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVS--LL-RKLDE 672 (746)
Q Consensus 596 ~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d~~--~l-~~l~~ 672 (746)
.+..++||++++++|+|||||||.+|+||||+++.....++. .+++|+||++.++++++++.+.+.+. .+ -....
T Consensus 171 ~~~~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~--~g~gfaIP~~~~~~~~~~l~~~g~v~~~~lGv~~~~ 248 (345)
T 3stj_A 171 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGS--VGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE 248 (345)
T ss_dssp SSCCEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSC--SSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC--CEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 736779995663998671344488988999984102687775--105789852899999999875144410002114675
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8801012445349999998999999984---4344-65-467752367889999999742
Q 004542 673 PNKHLASVWALMPPLSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLKH 727 (746)
Q Consensus 673 ~~~~i~~VW~L~~~~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~~ 727 (746)
.++.++....|.......+..+.++.|+ ++++ |. .+.+|.++..+-+....+...
T Consensus 249 ~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~~~l~~~l~~~ 308 (345)
T 3stj_A 249 MSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATT 308 (345)
T ss_dssp CCHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCHHHHHHHHHTS
T ss_pred ECHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC
T ss_conf 028788760788884379998334895897699999999998999988999999999835
No 3
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=1.00 E-value=1 Score=257.75 Aligned_cols=255 Identities=20% Similarity=0.317 Sum_probs=192.7
Q ss_pred CHHHHHHCCCCEEEEEEC------------------------------------CCEEEEEEEEEC-CCEEEECCCCCCC
Q ss_conf 906787505845999968------------------------------------983579999908-9779973533588
Q 004542 386 SPLPIQKALASVCLITID------------------------------------DGVWASGVLLND-QGLILTNAHLLEP 428 (746)
Q Consensus 386 ~p~~i~ka~~SVV~V~~g------------------------------------~~~wGSGviVs~-~GlILTNaHVVep 428 (746)
...+++++.|+||.|.+. ..++||||+|++ +||||||+||++.
T Consensus 21 ~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HVv~~ 100 (451)
T 3pv2_A 21 MAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHVIRN 100 (451)
T ss_dssp SHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHHHTT
T ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHCC
T ss_conf 89999974894799999986325677753446656678643665666555676443247999998999999978699399
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCE
Q ss_conf 77863010488666455788887879877542234468999998534664110000003334578336999974899741
Q 004542 429 WRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWI 508 (746)
Q Consensus 429 ~~~~~t~~~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~ 508 (746)
...+.|++.+++.
T Consensus 101 -----------------------------------------------------------------a~~i~V~~~dg~~-- 113 (451)
T 3pv2_A 101 -----------------------------------------------------------------ASLITVTLQDGRR-- 113 (451)
T ss_dssp -----------------------------------------------------------------EEEEEEECTTSCE--
T ss_pred -----------------------------------------------------------------CCEEEEEECCCCE--
T ss_conf -----------------------------------------------------------------9889999769979--
Q ss_pred EEEEEEEEECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCC-----CEEEEEEEEEEEECC
Q ss_conf 585599962489981699998458999521456999-99999919999028888998999-----805656995244226
Q 004542 509 WCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLS-----PSVSSGVVAKVVKAN 582 (746)
Q Consensus 509 w~~A~VV~v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~-----psvt~GiIS~v~~~~ 582 (746)
++|++++ .|+.+|||||+++. ..++++.++++ .+++|++|+++||| +++. .+++.|+|++..+..
T Consensus 114 -~~a~vv~-~d~~~DlAlLkv~~--~~l~~~~l~~s~~~~~G~~V~aiG~P-----~G~~~~~~~~~vt~Givs~~~r~~ 184 (451)
T 3pv2_A 114 -LKARLIG-GDSETDLAVLKIDA--KNLKSLVIGDSDKLEVGDFVVAIGNP-----FGLNSFGNSQSATFGIVSALKRSD 184 (451)
T ss_dssp -EECEEEE-EETTTTEEEEECCC--SSCCCCCBCCGGGCCTTCEEEEEECC-----CCC-----CCEEEEEEEEEEC---
T ss_pred -EEEEEEE-CCCCCCEEEEEECC--CCCCEEEECCCCCCCCCCEEEEEECC-----CCCCCCCCCCCEEEEEEEECCCCC
T ss_conf -9999992-47577479999768--67855674572448879989999899-----875665667735679994313355
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCC
Q ss_conf 88777664446888671899755446898777210279279999940026899965672279970457999999999606
Q 004542 583 LPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQ 662 (746)
Q Consensus 583 ~~~~~~~~~~~~~~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~ 662 (746)
. ....+..+|||||++++|+|||||||.+|+||||+++.....++.. +++|+||++.++++++++.+.+
T Consensus 185 ~---------~~~~~~~~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~--g~gfaIP~~~~~~~~~~l~~~g 253 (451)
T 3pv2_A 185 L---------NIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNV--GIGFAIPINMVKDVAQQIIKFG 253 (451)
T ss_dssp ----------------CCEEESSCCCGGGTTSEEEETTCCEEEEEECCC------C--CCEEEEEHHHHHHHHHHHHHHS
T ss_pred C---------CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC--CEEEEEHHHHHHHHHHHHHHCC
T ss_conf 5---------7777413899844527998748251889749999968663788853--2444400688999999998629
Q ss_pred CCCH--H-CCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6201--1-1478888010124453499-99998999999984---4344-65-467752367889999999742
Q 004542 663 EVSL--L-RKLDEPNKHLASVWALMPP-LSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLKH 727 (746)
Q Consensus 663 d~~~--l-~~l~~~~~~i~~VW~L~~~-~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~~ 727 (746)
.+.. + -.....++.++..+.|... ....+..+.|+.|+ ++++ |. .+.+|.++..+-+.+..+...
T Consensus 254 ~v~r~~lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~ 327 (451)
T 3pv2_A 254 SIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLL 327 (451)
T ss_dssp SCCCCBCCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHTS
T ss_pred CCCCCCCCCEEEECCHHHHHHCCCCCCCCEEEEEECCCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC
T ss_conf 76456666167865298998629986785089995589986887599999999988999927899999999715
No 4
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=249.82 Aligned_cols=237 Identities=21% Similarity=0.220 Sum_probs=160.1
Q ss_pred HCCCCEEEEEEC---------------CCEEEEEEEEECCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 505845999968---------------98357999990897799735335887786301048866645578888787987
Q 004542 392 KALASVCLITID---------------DGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHT 456 (746)
Q Consensus 392 ka~~SVV~V~~g---------------~~~wGSGviVs~~GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~~~ 456 (746)
..++|||.|.+. ..+.||||+|++ ||||||+|||+ +
T Consensus 45 ~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~d-G~IlTN~HVV~----------~------------------ 95 (539)
T 4fln_A 45 SFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGD-GKLLTNAHCVE----------H------------------ 95 (539)
T ss_dssp HHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEET-TEEEECGGGGT----------T------------------
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC-CEEEECHHHCC----------C------------------
T ss_conf 147876999977647787785414786606799999979-99997868828----------9------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCCEEEEEEEEEECCCCCCEEEEEECC--CC
Q ss_conf 7542234468999998534664110000003334578336999974-89974158559996248998169999845--89
Q 004542 457 GVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLD-HLDPWIWCDAKIVYVCKGPLDVSLLQLGY--IP 533 (746)
Q Consensus 457 ~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~-~~~~~~w~~A~VV~v~d~~~DIALLkle~--~p 533 (746)
+..+.|++. +++. |+|++++ .|+.+||||||++. .+
T Consensus 96 -------------------------------------a~~i~V~~~~dg~~---~~A~vv~-~D~~~DLAvLkv~~~~~~ 134 (539)
T 4fln_A 96 -------------------------------------DTQVKVKRRGDDRK---YVAKVLV-RGVDCDIALLSVESEDFW 134 (539)
T ss_dssp -------------------------------------EEEEEEECTTCCCC---EEEEEEE-EETTTTEEEEEECCSSSS
T ss_pred -------------------------------------CCEEEEEECCCCEE---EEEEEEE-ECCCCCEEEEEEECCCCC
T ss_conf -------------------------------------98699999269979---9999999-779988899998077677
Q ss_pred CCCCEEECCCCCCCCCCEEEEEECCCCCCCCCC-CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 995214569999999991999902888899899-9805656995244226887776644468886718997554468987
Q 004542 534 DQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGL-SPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGS 612 (746)
Q Consensus 534 ~~l~pi~l~~s~~~~Ge~V~vIG~glf~~~~g~-~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~S 612 (746)
..+.|+.+++. +++|++|+++||| ++. ..+++.|+||+..+.... .......+|||||++++|+|
T Consensus 135 ~~~~pl~~g~~-~~vGd~V~aiG~P-----~g~~~~tvT~GIVSa~~r~~~~--------~~~~~~~~IQtDAaInpGnS 200 (539)
T 4fln_A 135 KGAEPLRLGHL-PRLQDSVTVVGYP-----LGGDTISVTKGVVSRIEVTSYA--------HGSSDLLGIQIDAAINPGNS 200 (539)
T ss_dssp TTCCCCCBCCC-CCTTCEEEEEECC-----SSSCCCEEEEEEEEEEEEEECT--------TSCCEEEEEEESSCCCTTTT
T ss_pred CCCCEEECCCC-CCCCCEEEEEECC-----CCCCCCCEEEEEECCCCCCCCC--------CCCCCEEEEEEEEEECCCCC
T ss_conf 67845425886-7679969999868-----9999876784798756444457--------88741569999768659983
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCH-----HCCCCCCCCCCEEEEEECCCC
Q ss_conf 772102792799999400268999656722799704579999999996066201-----114788880101244534999
Q 004542 613 GGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSL-----LRKLDEPNKHLASVWALMPPL 687 (746)
Q Consensus 613 GGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d~~~-----l~~l~~~~~~i~~VW~L~~~~ 687 (746)
||||||.+|+||||+++..+..++ .+++|+||++.++++++++...|.+.. +.-.+..++.++....|....
T Consensus 201 GGPLvn~~GeVIGIntai~~~~~~---~gigfAIP~~~v~~vl~~l~~~G~~~~r~~LGv~~~~~~~~~~~~~~~l~~~~ 277 (539)
T 4fln_A 201 GGPAFNDQGECIGVAFQVYRSEET---ENIGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPALRECLKVPTNE 277 (539)
T ss_dssp TSEEECSSSCEEEEECCCC--------CCCEEEEEHHHHHHHHHHHHTTTSCCCCCBCCEEEEECCCHHHHHHHTCSSSB
T ss_pred CCHHCCCCCCEEEEEEEEECCCCC---CCCEECCCHHHHHHHHHHHHHCCEEEEEEECCEEEEECCCHHHHHHCCCCCCC
T ss_conf 344003799689899888437888---86300031999999999999769278531035687864799999860799767
Q ss_pred CCCCCCCCCCCCC--CCCC-CC-CCCCCCHHH
Q ss_conf 9998999999984--4344-65-467752367
Q 004542 688 SPKQGPSLPDLPQ--AALE-DN-IEGKGSRFA 715 (746)
Q Consensus 688 ~~~~~~~~~~~p~--~~~~-~~-~~~~~~~~a 715 (746)
...+..+.|+.|+ .+++ |. .+.+|.+++
T Consensus 278 Gv~V~~V~~~spA~~al~~GDvI~~idg~~V~ 309 (539)
T 4fln_A 278 GVLVRRVEPTSDASKVLKEGDVIVSFDDLHVG 309 (539)
T ss_dssp CEEEEEECTTSGGGGTCCTTCEEEEETTEECB
T ss_pred CEEEECCCCCCHHHHCCCCCCEEEEECCEEEC
T ss_conf 50440006899589476679899978999968
No 5
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=1.00 E-value=1 Score=248.56 Aligned_cols=235 Identities=27% Similarity=0.412 Sum_probs=182.5
Q ss_pred EEEEEEEEECC-CEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35799999089-77997353358877863010488666455788887879877542234468999998534664110000
Q 004542 406 VWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRA 484 (746)
Q Consensus 406 ~wGSGviVs~~-GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~ 484 (746)
++||||+|+++ ||||||+||++ +
T Consensus 86 ~~GSG~ii~~~~g~IlTn~HVv~----------~---------------------------------------------- 109 (448)
T 1ky9_A 86 ALGSGVIIDADKGYVVTNNHVVD----------N---------------------------------------------- 109 (448)
T ss_dssp EEEEEEEEETTTTEEEEEHHHHT----------T----------------------------------------------
T ss_pred CEEEEEEEECCCCEEEECHHHHC----------C----------------------------------------------
T ss_conf 17999999899899997758949----------9----------------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCC
Q ss_conf 003334578336999974899741585599962489981699998458999521456999-9999991999902888899
Q 004542 485 YKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPR 563 (746)
Q Consensus 485 ~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~ 563 (746)
...+.|++.+++. ++|++++ .|..+|||||+++. +..+++++++++ .+++|++|+++|| |
T Consensus 110 ---------a~~i~V~~~dg~~---~~a~vv~-~d~~~DlAvlkv~~-~~~~~~~~l~~s~~~~~G~~V~aiG~-----P 170 (448)
T 1ky9_A 110 ---------ATVIKVQLSDGRK---FDAKMVG-KDPRSDIALIQIQN-PKNLTAIKMADSDALRVGDYTVAIGN-----P 170 (448)
T ss_dssp ---------EEEEEEEETTSCE---EEEEEEE-EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTCEEEEEEC-----T
T ss_pred ---------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEEC-----C
T ss_conf ---------9879999789979---9999999-75889989999668-89982688446034888997999988-----8
Q ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 89998056569952442268877766444688867189975544689877721027927999994002689996567227
Q 004542 564 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLN 643 (746)
Q Consensus 564 ~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~ln 643 (746)
+++..+++.|+|++..+... ....+..+|||||++++|+|||||||.+|+||||+++.....++. .+++
T Consensus 171 ~g~~~tvt~Givs~~~r~~~---------~~~~~~~~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~--~g~g 239 (448)
T 1ky9_A 171 FGLGETVTSGIVSALGRSGL---------NAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGN--IGIG 239 (448)
T ss_dssp TSSSCEEEEEEEEEESSCC--------------CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCC--SSSE
T ss_pred CCCCCEEEEEEEEECCCCCC---------CCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEEEEECCCCCC--CCEE
T ss_conf 88887188689950355655---------777756779983787897778836877988999987753588874--5324
Q ss_pred EEEEHHHHHHHHHHHHHCCCCC--HH-CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHH
Q ss_conf 9970457999999999606620--11-147888801012445349999998999999984---4344-65-467752367
Q 004542 644 FSIPCAVLRPIFEFARDMQEVS--LL-RKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFA 715 (746)
Q Consensus 644 FaIPi~~L~~il~~~~~~~d~~--~l-~~l~~~~~~i~~VW~L~~~~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~a 715 (746)
|+||++.++++++++...+.+. .+ -.....++.++.-+.|..........+.++.|+ ++++ |. ...+|.++.
T Consensus 240 faIP~~~~~~~~~~l~~~g~v~~~~LGv~~~~~~~~~a~~lgl~~~~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~ 319 (448)
T 1ky9_A 240 FAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319 (448)
T ss_dssp EEEEHHHHHHHHHHHHHHSSCCBCCCCCSCCCTTSHHHHTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCC
T ss_pred EEEECCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 25630320114999864212410024432344459999971899888469999455897897189999999998999958
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999974
Q 004542 716 KFIAERREVLK 726 (746)
Q Consensus 716 kf~~~~~~~~~ 726 (746)
.+.+....+..
T Consensus 320 ~~~~l~~~l~~ 330 (448)
T 1ky9_A 320 SFAALRAQVGT 330 (448)
T ss_dssp SSHHHHHHTTS
T ss_pred CHHHHHHHHHH
T ss_conf 87999999984
No 6
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=240.02 Aligned_cols=193 Identities=30% Similarity=0.519 Sum_probs=157.1
Q ss_pred CHHHHHHCCCCEEEEEECC----------------------------CEEEEEEEEECC-CEEEECCCCCCCCCCCCEEE
Q ss_conf 9067875058459999689----------------------------835799999089-77997353358877863010
Q 004542 386 SPLPIQKALASVCLITIDD----------------------------GVWASGVLLNDQ-GLILTNAHLLEPWRFGKTTV 436 (746)
Q Consensus 386 ~p~~i~ka~~SVV~V~~g~----------------------------~~wGSGviVs~~-GlILTNaHVVep~~~~~t~~ 436 (746)
...+++++.++||.|.+.. .+.||||+|+++ ||||||+||++.
T Consensus 15 ~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~~-------- 86 (245)
T 3sti_A 15 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQ-------- 86 (245)
T ss_dssp SHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC----------
T ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECHHHHCC--------
T ss_conf 999998737966999998741256666504455314555544566666268999996998999973788089--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 48866645578888787987754223446899999853466411000000333457833699997489974158559996
Q 004542 437 SGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVY 516 (746)
Q Consensus 437 ~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~ 516 (746)
...+.|++.+++. +++++++
T Consensus 87 ---------------------------------------------------------a~~i~V~~~dg~~---~~a~vv~ 106 (245)
T 3sti_A 87 ---------------------------------------------------------AQKISIQLNDGRE---FDAKLIG 106 (245)
T ss_dssp -----------------------------------------------------------CEEEECTTSCE---EEEEEEE
T ss_pred ---------------------------------------------------------CCEEEEEECCCCE---EEEEEEE
T ss_conf ---------------------------------------------------------9779999789989---9999998
Q ss_pred ECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2489981699998458999521456999-999999199990288889989998056569952442268877766444688
Q 004542 517 VCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNS 595 (746)
Q Consensus 517 v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~ 595 (746)
.|+.+||||||++. +..++++++.++ .+++|+.|+++|| |++...+++.|+|++..+... ...
T Consensus 107 -~d~~~DlAlLkv~~-~~~~~~~~l~~s~~~~~G~~v~aiG~-----P~g~~~~vt~G~vs~~~~~~~---------~~~ 170 (245)
T 3sti_A 107 -SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGN-----PFGLGQTATSGIVSALGRSGL---------NLE 170 (245)
T ss_dssp -EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTBEEEEEEC-----GGGSCCEEEEEEEEECSSCSS---------CCT
T ss_pred -ECCCCCEEEEEECC-CCCCCEEEECCCCCCCCCCEEEEEEC-----CCCCCCCEEEEEEEEECCCCC---------CCC
T ss_conf -64789889999306-77773366068677897999999989-----898788687669955134555---------778
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 867189975544689877721027927999994002689996567227997045799999999960662
Q 004542 596 AYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV 664 (746)
Q Consensus 596 ~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d~ 664 (746)
.+..++||++++++|+|||||||.+|+||||+++.....++.. +++|+||++.++++++++.+.+++
T Consensus 171 ~~~~~i~tda~i~~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~--g~~faIP~~~~~~~~~~l~~~g~~ 237 (245)
T 3sti_A 171 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLIDFGEI 237 (245)
T ss_dssp TCSSCEEESSCCCTTTTTSEEECTTSCEEEEEECCC------C--CCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCHHHEECCCCEEEEEEEEEECCCCCCC--EEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 8568899857739975426854179859999976798899843--089998699999999999980997
No 7
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=1.00 E-value=1 Score=239.68 Aligned_cols=254 Identities=21% Similarity=0.285 Sum_probs=187.6
Q ss_pred CHHHHHHCCCCEEEEEECC-----------CEEEEEEEEECCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9067875058459999689-----------83579999908977997353358877863010488666455788887879
Q 004542 386 SPLPIQKALASVCLITIDD-----------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSG 454 (746)
Q Consensus 386 ~p~~i~ka~~SVV~V~~g~-----------~~wGSGviVs~~GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~ 454 (746)
...+++++.+|||.|.+.. ..+||||+|+++||||||+||+..
T Consensus 11 ~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~-------------------------- 64 (318)
T 1te0_A 11 YNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND-------------------------- 64 (318)
T ss_dssp CHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECSTTCEEEEEHHHHTT--------------------------
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEECHHHCCC--------------------------
T ss_conf 899998608968999967536776556566852799999089899988789699--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCC
Q ss_conf 87754223446899999853466411000000333457833699997489974158559996248998169999845899
Q 004542 455 HTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPD 534 (746)
Q Consensus 455 ~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p~ 534 (746)
...+.|++.+++. +.+++++ .+..+|||||+++. +.
T Consensus 65 ---------------------------------------~~~i~V~~~~g~~---~~a~v~~-~d~~~DlAllk~~~-~~ 100 (318)
T 1te0_A 65 ---------------------------------------ADQIIVALQDGRV---FEALLVG-SDSLTDLAVLIIKA-TG 100 (318)
T ss_dssp ---------------------------------------CSEEEEECTTSCE---EEEEEEE-EETTTTEEEEECCC-SS
T ss_pred ---------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCEEEEEEEEC-CC
T ss_conf ---------------------------------------9879999479989---9899997-07896289999927-88
Q ss_pred CCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9521456999-999999199990288889989998056569952442268877766444688867189975544689877
Q 004542 535 QLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSG 613 (746)
Q Consensus 535 ~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~SG 613 (746)
.++++.+..+ .+..|+.|+++||| ++...+++.|+|+...+... .......++|+++++++|+||
T Consensus 101 ~~~~~~l~~~~~~~~G~~v~~~G~p-----~g~~~~~~~g~vs~~~~~~~---------~~~~~~~~i~~d~~~~~G~SG 166 (318)
T 1te0_A 101 GLPTIPINARRVPHIGDVVLAIGNP-----YNLGQTITQGIISATGRIGL---------NPTGRQNFLQTDASINHGNSG 166 (318)
T ss_dssp CCCCCCCCTTCCCCTTCEEEEECCC-----SSSSCCEEEEEEEECCCCCC---------CTTCSCCSEEESSCCCTTTTT
T ss_pred CCCEEEEECCCCCCCCCEEEEEECC-----CCCCCCEEEEEEECCCCCCC---------CCCCCCCEEEECCCCCCCCCC
T ss_conf 9865774075678889999999918-----98787087369831445543---------788867889999877899873
Q ss_pred CCCCCCCCEEEEEEEEECCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCCC-----H-HCCCCCCCCCCEEEEEECCC
Q ss_conf 7210279279999940026899-965672279970457999999999606620-----1-11478888010124453499
Q 004542 614 GAVVNLDGHMIGLVTSNARHGG-GTVIPHLNFSIPCAVLRPIFEFARDMQEVS-----L-LRKLDEPNKHLASVWALMPP 686 (746)
Q Consensus 614 GPLvd~~G~VIGIvtsna~~~~-G~~~p~lnFaIPi~~L~~il~~~~~~~d~~-----~-l~~l~~~~~~i~~VW~L~~~ 686 (746)
|||||.+|+||||+++.....+ +....+++|+||++.++++++++...+.+. + ++.+ ++..+..+.+...
T Consensus 167 GPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g~~~~~~lGi~~~~~---~~~~~~~~g~~~~ 243 (318)
T 1te0_A 167 GALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREI---APLHAQGGGIDQL 243 (318)
T ss_dssp SEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHSSCCCEECCEEEEEC---SCCCSSSSCSSSC
T ss_pred CCEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEEC---CHHHHHHCCCCCC
T ss_conf 7258899829999855303677666644248853699999999999974975456421576534---5667875267889
Q ss_pred CCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998999999984---4344-65-46775236788999999974
Q 004542 687 LSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLK 726 (746)
Q Consensus 687 ~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~ 726 (746)
....+..+.|+.|+ ++++ |. .+.+|.++..+-+....+.+
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~ 288 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAE 288 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHT
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHH
T ss_conf 857999958999478789999999999899996899999999973
No 8
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=238.88 Aligned_cols=253 Identities=24% Similarity=0.324 Sum_probs=183.9
Q ss_pred HHHHHCCCCEEEEEECC--------------CEEEEEEEEECCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 67875058459999689--------------8357999990897799735335887786301048866645578888787
Q 004542 388 LPIQKALASVCLITIDD--------------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASS 453 (746)
Q Consensus 388 ~~i~ka~~SVV~V~~g~--------------~~wGSGviVs~~GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~ 453 (746)
.+++++.+|||.|.... .++||||+|+++||||||+||++.
T Consensus 21 ~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~~G~IlT~aHvv~~------------------------- 75 (348)
T 3qo6_A 21 RLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNYHVIRG------------------------- 75 (348)
T ss_dssp HHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEETTTEEEECHHHHTT-------------------------
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEECHHHHCC-------------------------
T ss_conf 9999727979999977613565455544346834999999189889988789089-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 98775422344689999985346641100000033345783369999748997415855999624899816999984589
Q 004542 454 GHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIP 533 (746)
Q Consensus 454 ~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p 533 (746)
...+.|++.++.. +++++++ .+..+|||||+++...
T Consensus 76 ----------------------------------------~~~i~V~~~~g~~---~~a~~v~-~d~~~DlAlLkl~~~~ 111 (348)
T 3qo6_A 76 ----------------------------------------ASDLRVTLADQTT---FDAKVVG-FDQDKDVAVLRIDAPK 111 (348)
T ss_dssp ----------------------------------------CSEEEEECTTSCE---EEEEEEE-EEGGGTEEEEECCCCG
T ss_pred ----------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECCCC
T ss_conf ----------------------------------------8679999779979---9899999-8676787999975887
Q ss_pred CCCCEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 99521456999-99999919999028888998999805656995244226887776644468886718997554468987
Q 004542 534 DQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGS 612 (746)
Q Consensus 534 ~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~S 612 (746)
..++++.+..+ .+..|+.|+++||| .+...+++.|+++...+...... .......++|+++++++|+|
T Consensus 112 ~~~~~i~l~~s~~~~~G~~v~~iG~p-----~g~~~~~~~g~vs~~~~~~~~~~------~~~~~~~~i~~da~i~~G~S 180 (348)
T 3qo6_A 112 NKLRPIPVGVSADLLVGQKVFAIGNP-----FGLDHTLTTGVISGLRREISSAA------TGRPIQDVIQTDAAINPGNS 180 (348)
T ss_dssp GGCCCCCBCCSTTCCTTCEEEEEECG-----GGCTTEEEEEEEEEEEEEECCSS------SSSCEEEEEEECSCCCTTCT
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEEEECCCCCCCC------CCCCCCCEEEEECCCCCCCC
T ss_conf 77415770673557889989999878-----98887675789976523102356------78742688999177199875
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCH--H-CCCCCCCCCCEEEEEECCCCCC
Q ss_conf 772102792799999400268999656722799704579999999996066201--1-1478888010124453499999
Q 004542 613 GGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSL--L-RKLDEPNKHLASVWALMPPLSP 689 (746)
Q Consensus 613 GGPLvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d~~~--l-~~l~~~~~~i~~VW~L~~~~~~ 689 (746)
||||||.+|+||||+++.....++ ..+++|+||++.++++++++...+.+.- + -.+. .....+. +. ....
T Consensus 181 GGPLvn~~G~vvGI~s~~~~~~~~--~~g~gfaiP~~~~~~~~~~l~~~g~~~~~~lGi~~~-~~~~~~~---~~-~~Gv 253 (348)
T 3qo6_A 181 GGPLLDSSGTLIGINTAIYSPSGA--SSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFA-PDQSVEQ---LG-VSGV 253 (348)
T ss_dssp TCEEECTTSCEEEEEEEEECSSSS--CSSCEEEEEHHHHHHHHHHHHHHSSCCCEECCCEEC-CTTTTTT---TT-CSSE
T ss_pred HHHHHCCCCEEEEEEEEEECCCCC--CCCEEEEEEECCHHHHHHHHHHCCCEEEEECCCEEC-CCHHHHH---CC-CCEE
T ss_conf 789037998299999762268887--463799999355479999998679255665474870-4134442---37-7607
Q ss_pred CCCCCCCCCCC---CCC------------CCC-CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98999999984---434------------465-467752367889999999742
Q 004542 690 KQGPSLPDLPQ---AAL------------EDN-IEGKGSRFAKFIAERREVLKH 727 (746)
Q Consensus 690 ~~~~~~~~~p~---~~~------------~~~-~~~~~~~~akf~~~~~~~~~~ 727 (746)
.+..+.++.|+ +++ .|. .+.+|.++..+-+.+..+.+.
T Consensus 254 ~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~~~ 307 (348)
T 3qo6_A 254 LVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQC 307 (348)
T ss_dssp EEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHTTC
T ss_pred EEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHC
T ss_conf 999866999589757864334444777889899998999918999999999728
No 9
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=1.00 E-value=1 Score=228.46 Aligned_cols=264 Identities=20% Similarity=0.240 Sum_probs=183.0
Q ss_pred HHHHHHCCCCEEEEEE---CCCEEEEEEEEECCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0678750584599996---8983579999908977997353358877863010488666455788887879877542234
Q 004542 387 PLPIQKALASVCLITI---DDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQK 463 (746)
Q Consensus 387 p~~i~ka~~SVV~V~~---g~~~wGSGviVs~~GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~~~~~~~~~~ 463 (746)
..+++++.++||.|.+ ....+||||+|+++||||||+||+....... .
T Consensus 9 ~~~~~~~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~---~-------------------------- 59 (324)
T 1y8t_A 9 EQVAAKVVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPP---L-------------------------- 59 (324)
T ss_dssp HHHHHHHGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTTCC---------------------------------
T ss_pred HHHHHHHCCCEEEEEEECCCCCCEEEEEEEECCCEEEECHHHCCCCCCCC---C--------------------------
T ss_conf 99998725958999987168880389999928978998867708764444---4--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEECCC
Q ss_conf 46899999853466411000000333457833699997489974158559996248998169999845899952145699
Q 004542 464 SQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADF 543 (746)
Q Consensus 464 ~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p~~l~pi~l~~ 543 (746)
......+.|++.++.. +++++++ .+..+|||||+++. +..++++.+..
T Consensus 60 ---------------------------~~~~~~i~V~~~~g~~---~~a~vv~-~d~~~DlAllkl~~-~~~~~~~~l~~ 107 (324)
T 1y8t_A 60 ---------------------------GSPPPKTTVTFSDGRT---APFTVVG-ADPTSDIAVVRVQG-VSGLTPISLGS 107 (324)
T ss_dssp -------------------------------CEEEEEETTCCE---ECEEEEE-CCTTTTEEEEEECS-CCSCCCCEECC
T ss_pred ---------------------------CCCCEEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECC-CCCCCEEEECC
T ss_conf ---------------------------5786079999689999---9999997-47998879999878-78984588037
Q ss_pred C-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 9-999999199990288889989998056569952442268877766444688867189975544689877721027927
Q 004542 544 G-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGH 622 (746)
Q Consensus 544 s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~SGGPLvd~~G~ 622 (746)
+ .+..|+.|+++||| .+...+++.|+++...+... .... .........+||+++++++|+|||||||.+|+
T Consensus 108 ~~~~~~G~~v~~~G~p-----~g~~~~~~~G~vs~~~~~~~-~~~~--~g~~~~~~~~i~~d~~~~~G~SGGPlv~~~G~ 179 (324)
T 1y8t_A 108 SSDLRVGQPVLAIGSP-----LGLEGTVTTGIVSALNRPVS-TTGE--AGNQNTVLDAIQTDAAINPGNSGGALVNMNAQ 179 (324)
T ss_dssp STTCCTTCEEEEEECG-----GGCTTEEEEEEEEEEEEEEC-C---------CCCEEEEEECSCCCTTCTTEEEECTTSE
T ss_pred CCCCCCCCEEEEEECC-----CCCCCCEEEEEEEECCCCCC-CCCC--CCCCCCCCCEEEECCCCCCCCCCCCEECCCCE
T ss_conf 4668999989999847-----98787473139720566522-4666--67644557879990878999964708998995
Q ss_pred EEEEEEEECCCCC-----CCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEEEE-CCCCCCCCCCCCC
Q ss_conf 9999940026899-----965672279970457999999999606620111478888010124453-4999999899999
Q 004542 623 MIGLVTSNARHGG-----GTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWAL-MPPLSPKQGPSLP 696 (746)
Q Consensus 623 VIGIvtsna~~~~-----G~~~p~lnFaIPi~~L~~il~~~~~~~d~~~l~~l~~~~~~i~~VW~L-~~~~~~~~~~~~~ 696 (746)
||||+++...... .....+++|+||++.++++++++...+.+.. ..+...+.. .......+..+.+
T Consensus 180 vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g~~~~--------~~lGi~~~~~~~~~g~~V~~v~~ 251 (324)
T 1y8t_A 180 LVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGKASH--------ASLGVQVTNDKDTLGAKIVEVVA 251 (324)
T ss_dssp EEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHSCCCC--------EECCEEEESCSSSSSEEEEEECT
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCC--------CCCCEEEEECCCCCCEEEEEECC
T ss_conf 9999822104676544455565534886389999999999997697456--------63433752046788649999789
Q ss_pred CCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9984---4344-65-467752367889999999742
Q 004542 697 DLPQ---AALE-DN-IEGKGSRFAKFIAERREVLKH 727 (746)
Q Consensus 697 ~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~~ 727 (746)
+.|+ ++++ |. ...+|.++..+-+....+.+.
T Consensus 252 ~spA~~aGl~~GD~I~~ing~~v~~~~~l~~~l~~~ 287 (324)
T 1y8t_A 252 GGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSK 287 (324)
T ss_dssp TSTTTTTTCCTTCEEEEETTEECCSHHHHHHHHHTS
T ss_pred CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC
T ss_conf 996998689999999998999978999999999726
No 10
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=1.00 E-value=1 Score=227.45 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=178.8
Q ss_pred HHHHHHCCCCEEEEEECC----------CEEEEEEEEECCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 067875058459999689----------8357999990897799735335887786301048866645578888787987
Q 004542 387 PLPIQKALASVCLITIDD----------GVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHT 456 (746)
Q Consensus 387 p~~i~ka~~SVV~V~~g~----------~~wGSGviVs~~GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~~~ 456 (746)
..+++++.+|||.|+... ..+||||+|+++||||||+||+..
T Consensus 18 ~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~---------------------------- 69 (325)
T 1lcy_A 18 ADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVAD---------------------------- 69 (325)
T ss_dssp HHHHHHHGGGEEEEEEEEEETTTTEEEEEEEEEEEEEETTTEEEECHHHHTT----------------------------
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEECHHHCCC----------------------------
T ss_conf 9999970794899998734766777540530799999189989989789699----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCC
Q ss_conf 75422344689999985346641100000033345783369999748997415855999624899816999984589995
Q 004542 457 GVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQL 536 (746)
Q Consensus 457 ~~~~~~~~q~l~~k~~~~~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p~~l 536 (746)
...+.|++.+++. +++++++ .+..+|||||+++. +..+
T Consensus 70 -------------------------------------~~~i~V~~~~g~~---~~a~v~~-~d~~~DlAllkl~~-~~~~ 107 (325)
T 1lcy_A 70 -------------------------------------RRRVRVRLLSGDT---YEAVVTA-VDPVADIATLRIQT-KEPL 107 (325)
T ss_dssp -------------------------------------CSEEEEECTTSCE---EEEEEEE-EETTTTEEEEECCC-SSCC
T ss_pred -------------------------------------CCEEEEEECCCCE---EEEEEEE-ECCCCCEEEEEECC-CCCC
T ss_conf -------------------------------------9779999689999---9999999-78988789999767-8988
Q ss_pred CEEECCCC-CCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 21456999-99999919999028888998999805656995244226887776644468886718997554468987772
Q 004542 537 CPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGA 615 (746)
Q Consensus 537 ~pi~l~~s-~~~~Ge~V~vIG~glf~~~~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~SGGP 615 (746)
+++.++.+ .+..|+.|+++||| .+...+++.|+|+...+... .. ........+||+++++++|+||||
T Consensus 108 ~~~~l~~~~~~~~G~~v~~~G~p-----~~~~~~v~~G~vs~~~~~~~-~~-----g~~~~~~~~i~~d~~~~~G~SGGP 176 (325)
T 1lcy_A 108 PTLPLGRSADVRQGEFVVAMGSP-----FALQNTITSGIVSSAQRPAR-DL-----GLPQTNVEYIQTDAAIDFGNAGGP 176 (325)
T ss_dssp CCCCBCCGGGCCTTCEEEECCCT-----TSSSSCCEEEEBCSCSCC---------------CCCCEEESSCCSTTTTTSE
T ss_pred CEEEECCCCCCCCCCEEEEEECC-----CCCCCCEEEEEEECCCCCCC-CC-----CCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 55882363668999989999899-----98877587579812555654-46-----777777788999687789985162
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCC-----------CCH-HCCCCCCCCCCEEEEEE
Q ss_conf 102792799999400268999656722799704579999999996066-----------201-11478888010124453
Q 004542 616 VVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQE-----------VSL-LRKLDEPNKHLASVWAL 683 (746)
Q Consensus 616 Lvd~~G~VIGIvtsna~~~~G~~~p~lnFaIPi~~L~~il~~~~~~~d-----------~~~-l~~l~~~~~~i~~VW~L 683 (746)
|||.+|+||||+++... .+++|+||++.++++++++...+. +++ ++. .++.++.-+.+
T Consensus 177 l~~~~G~vVGI~s~~~~-------~g~~~aip~~~i~~~l~~~~~~~~~~g~~~~~r~~lGv~~~~---l~~~~~~~~~l 246 (325)
T 1lcy_A 177 LVNLDGEVIGVNTMKVT-------AGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLT---LSPSILAELQL 246 (325)
T ss_dssp EEETTSCEEEEEEEEEE-------TTEEEEEEHHHHHHHTCC---------------EECCEEEEE---CCHHHHHHHTT
T ss_pred EECCCCEEEEEEEEEEC-------CCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHCC
T ss_conf 89889979999847615-------890489889999999998654045433354543346517632---78899986376
Q ss_pred CCC------CCCCCCCCCCCCCC---CCCC-CC-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 499------99998999999984---4344-65-46775236788999999974
Q 004542 684 MPP------LSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLK 726 (746)
Q Consensus 684 ~~~------~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~akf~~~~~~~~~ 726 (746)
... .......+.++.|+ ++++ |. .+.+|.++..+-+..+.+.+
T Consensus 247 ~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~l~~~l~~ 300 (325)
T 1lcy_A 247 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT 300 (325)
T ss_dssp SCTTSCCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHTT
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC
T ss_conf 544555688875999967689588789999999999899995899999999857
Done!