Query 004543
Match_columns 745
No_of_seqs 411 out of 2073
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5E-121 1E-125 1066.0 47.9 495 1-512 326-834 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 3E-116 7E-121 1029.9 35.2 449 1-463 354-817 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2E-110 4E-115 970.5 35.3 417 1-419 261-677 (677)
4 KOG0160 Myosin class V heavy c 100.0 5E-107 1E-111 931.0 40.2 491 1-512 265-758 (862)
5 KOG0164 Myosin class I heavy c 100.0 3E-107 6E-112 884.3 32.1 492 1-518 269-790 (1001)
6 cd01381 MYSc_type_VII Myosin m 100.0 2E-106 4E-111 937.3 34.8 407 1-419 256-671 (671)
7 cd01377 MYSc_type_II Myosin mo 100.0 3E-106 6E-111 940.3 36.1 415 1-419 271-693 (693)
8 cd01380 MYSc_type_V Myosin mot 100.0 4E-106 8E-111 939.2 35.3 418 1-419 262-691 (691)
9 cd01378 MYSc_type_I Myosin mot 100.0 4E-106 9E-111 936.5 34.0 404 1-419 259-674 (674)
10 cd01384 MYSc_type_XI Myosin mo 100.0 4E-106 8E-111 934.0 33.1 406 1-422 261-673 (674)
11 cd01387 MYSc_type_XV Myosin mo 100.0 1E-105 3E-110 931.5 35.6 415 1-419 257-677 (677)
12 cd01382 MYSc_type_VI Myosin mo 100.0 5E-105 1E-109 931.4 33.8 408 1-418 287-715 (717)
13 cd01385 MYSc_type_IX Myosin mo 100.0 7E-105 1E-109 927.3 34.5 414 1-420 267-689 (692)
14 smart00242 MYSc Myosin. Large 100.0 9E-103 2E-107 912.4 34.1 406 1-420 265-677 (677)
15 cd01379 MYSc_type_III Myosin m 100.0 1E-102 2E-107 902.7 32.9 382 1-419 262-653 (653)
16 KOG0162 Myosin class I heavy c 100.0 1E-102 2E-107 848.4 26.0 447 1-467 277-737 (1106)
17 cd00124 MYSc Myosin motor doma 100.0 1E-101 2E-106 905.9 35.0 416 1-419 257-679 (679)
18 KOG0161 Myosin class II heavy 100.0 7E-101 2E-105 938.1 40.2 463 1-489 345-816 (1930)
19 cd01386 MYSc_type_XVIII Myosin 100.0 6E-100 1E-104 890.1 34.3 416 1-419 259-767 (767)
20 PF00063 Myosin_head: Myosin h 100.0 4.1E-98 9E-103 884.8 32.3 408 1-408 260-689 (689)
21 KOG0163 Myosin class VI heavy 100.0 3.2E-94 6.9E-99 782.5 46.1 455 1-466 340-833 (1259)
22 KOG4229 Myosin VII, myosin IXB 100.0 3E-59 6.5E-64 549.8 12.8 509 1-516 320-1010(1062)
23 KOG0161 Myosin class II heavy 98.1 0.00092 2E-08 85.7 28.4 283 29-369 324-627 (1930)
24 KOG0160 Myosin class V heavy c 98.0 0.00012 2.6E-09 86.9 17.2 73 445-521 672-744 (862)
25 KOG0520 Uncharacterized conser 97.9 1.1E-05 2.4E-10 95.5 5.4 95 424-518 811-937 (975)
26 COG5022 Myosin heavy chain [Cy 97.4 0.0084 1.8E-07 74.0 19.5 99 423-522 793-892 (1463)
27 PF00612 IQ: IQ calmodulin-bin 97.3 0.00027 5.9E-09 44.3 3.3 19 473-491 2-20 (21)
28 KOG2128 Ras GTPase-activating 97.1 0.0075 1.6E-07 74.0 14.7 90 427-518 539-645 (1401)
29 PF00612 IQ: IQ calmodulin-bin 96.9 0.001 2.2E-08 41.8 3.2 21 495-515 1-21 (21)
30 KOG0164 Myosin class I heavy c 96.5 0.0054 1.2E-07 70.1 7.4 59 447-516 697-755 (1001)
31 PTZ00014 myosin-A; Provisional 96.0 0.016 3.5E-07 70.1 8.3 43 472-514 777-819 (821)
32 smart00015 IQ Short calmodulin 96.0 0.0077 1.7E-07 39.9 3.0 19 473-491 4-22 (26)
33 smart00015 IQ Short calmodulin 95.9 0.0074 1.6E-07 39.9 2.6 21 445-465 2-22 (26)
34 KOG2128 Ras GTPase-activating 95.0 0.13 2.9E-06 63.6 10.9 72 425-496 567-646 (1401)
35 KOG4229 Myosin VII, myosin IXB 94.6 0.033 7.1E-07 68.4 4.7 173 290-464 642-820 (1062)
36 KOG0163 Myosin class VI heavy 93.6 2.7 5.8E-05 49.3 16.7 27 470-496 811-837 (1259)
37 KOG0520 Uncharacterized conser 93.5 0.16 3.5E-06 61.2 7.3 81 424-508 867-947 (975)
38 KOG0971 Microtubule-associated 90.0 11 0.00024 45.4 16.5 88 520-607 958-1049(1243)
39 PF09755 DUF2046: Uncharacteri 88.2 41 0.00088 36.2 18.5 97 553-666 143-243 (310)
40 KOG0804 Cytoplasmic Zn-finger 87.7 6.6 0.00014 43.7 12.1 69 532-600 376-444 (493)
41 PF12325 TMF_TATA_bd: TATA ele 86.5 16 0.00035 33.8 12.3 56 541-596 64-119 (120)
42 PF06005 DUF904: Protein of un 85.2 21 0.00046 29.9 11.6 50 539-588 5-54 (72)
43 PF15290 Syntaphilin: Golgi-lo 84.5 14 0.0003 38.8 11.8 60 551-610 116-178 (305)
44 PRK11637 AmiB activator; Provi 84.3 10 0.00022 43.0 12.3 40 550-589 80-119 (428)
45 PRK09039 hypothetical protein; 84.1 45 0.00097 36.7 16.7 30 649-678 238-267 (343)
46 TIGR02449 conserved hypothetic 83.7 13 0.00029 30.4 9.1 56 541-596 3-58 (65)
47 PRK13729 conjugal transfer pil 83.5 9.6 0.00021 43.2 11.2 57 548-608 72-128 (475)
48 COG3883 Uncharacterized protei 82.8 13 0.00029 39.0 11.2 64 535-598 49-112 (265)
49 PF12718 Tropomyosin_1: Tropom 80.3 26 0.00056 33.5 11.4 18 589-606 78-95 (143)
50 COG4026 Uncharacterized protei 78.7 34 0.00074 34.7 11.9 10 396-405 33-42 (290)
51 PRK11637 AmiB activator; Provi 78.4 24 0.00051 40.1 12.5 51 538-588 61-111 (428)
52 PRK10884 SH3 domain-containing 77.6 23 0.00049 36.1 10.7 52 538-589 118-169 (206)
53 KOG0942 E3 ubiquitin protein l 76.9 79 0.0017 38.6 16.1 41 457-497 14-54 (1001)
54 KOG0977 Nuclear envelope prote 75.1 75 0.0016 37.0 15.0 77 533-609 115-194 (546)
55 PF10205 KLRAQ: Predicted coil 75.1 62 0.0014 29.0 11.9 11 591-601 61-71 (102)
56 PF12718 Tropomyosin_1: Tropom 74.6 36 0.00079 32.5 10.7 48 542-589 11-58 (143)
57 PRK10884 SH3 domain-containing 74.4 35 0.00076 34.7 11.1 13 398-410 27-39 (206)
58 COG1579 Zn-ribbon protein, pos 73.2 1.2E+02 0.0027 31.5 15.7 17 492-508 55-71 (239)
59 PF08826 DMPK_coil: DMPK coile 73.2 48 0.001 26.9 10.2 31 557-587 23-53 (61)
60 COG3883 Uncharacterized protei 72.4 57 0.0012 34.4 12.2 70 533-602 40-109 (265)
61 PF04111 APG6: Autophagy prote 71.9 53 0.0011 35.7 12.5 43 536-578 48-90 (314)
62 PRK09039 hypothetical protein; 70.9 47 0.001 36.6 12.0 63 533-595 125-187 (343)
63 KOG4427 E3 ubiquitin protein l 70.8 8.1 0.00018 45.5 6.1 19 473-491 31-49 (1096)
64 KOG3684 Ca2+-activated K+ chan 70.6 1.8E+02 0.0038 33.1 16.0 40 451-491 344-383 (489)
65 PF06005 DUF904: Protein of un 70.0 65 0.0014 27.0 10.3 45 541-585 21-65 (72)
66 PRK15422 septal ring assembly 69.5 69 0.0015 27.2 9.7 34 540-573 6-39 (79)
67 COG1579 Zn-ribbon protein, pos 69.2 55 0.0012 34.0 11.2 11 540-550 98-108 (239)
68 COG4026 Uncharacterized protei 68.4 75 0.0016 32.3 11.4 7 429-435 78-84 (290)
69 PF06785 UPF0242: Uncharacteri 68.3 1.7E+02 0.0038 31.6 14.7 47 533-579 136-182 (401)
70 PF11932 DUF3450: Protein of u 67.3 86 0.0019 32.8 12.6 48 542-589 67-114 (251)
71 KOG0942 E3 ubiquitin protein l 67.0 65 0.0014 39.3 12.4 36 484-519 18-53 (1001)
72 KOG1962 B-cell receptor-associ 66.6 1.3E+02 0.0027 30.9 12.9 13 383-395 13-25 (216)
73 PF08826 DMPK_coil: DMPK coile 66.3 48 0.001 26.9 7.9 24 559-582 18-41 (61)
74 COG3074 Uncharacterized protei 66.3 74 0.0016 26.3 10.2 29 553-581 26-54 (79)
75 PF04156 IncA: IncA protein; 65.6 98 0.0021 30.7 12.2 23 536-558 93-115 (191)
76 COG4942 Membrane-bound metallo 65.5 78 0.0017 35.6 12.2 119 539-680 60-178 (420)
77 PF13851 GAS: Growth-arrest sp 65.3 90 0.002 31.6 11.8 25 564-588 98-122 (201)
78 PF15294 Leu_zip: Leucine zipp 65.1 49 0.0011 35.1 10.0 76 530-605 131-222 (278)
79 PF08614 ATG16: Autophagy prot 64.7 46 0.001 33.4 9.6 60 532-591 117-176 (194)
80 KOG0162 Myosin class I heavy c 64.6 14 0.00031 43.4 6.4 43 471-516 695-737 (1106)
81 PF00038 Filament: Intermediat 64.0 95 0.0021 33.4 12.7 28 571-598 260-287 (312)
82 PRK13729 conjugal transfer pil 63.5 32 0.0007 39.1 8.9 55 535-589 66-120 (475)
83 PF13094 CENP-Q: CENP-Q, a CEN 63.0 65 0.0014 31.2 10.1 59 538-596 27-85 (160)
84 PF04849 HAP1_N: HAP1 N-termin 63.0 1E+02 0.0022 33.3 12.0 70 530-599 226-295 (306)
85 PF09726 Macoilin: Transmembra 62.9 99 0.0021 37.5 13.4 9 219-227 167-175 (697)
86 COG2433 Uncharacterized conser 62.8 81 0.0018 36.9 11.8 33 687-722 609-642 (652)
87 PF08614 ATG16: Autophagy prot 62.7 1.5E+02 0.0033 29.6 13.0 49 541-589 133-181 (194)
88 KOG0995 Centromere-associated 62.6 3E+02 0.0065 32.1 16.2 103 487-598 264-378 (581)
89 PF12329 TMF_DNA_bd: TATA elem 62.3 85 0.0018 26.4 9.2 53 533-585 14-66 (74)
90 PF10211 Ax_dynein_light: Axon 61.9 1.8E+02 0.0039 29.2 16.2 33 476-508 75-107 (189)
91 PF00769 ERM: Ezrin/radixin/mo 61.7 72 0.0016 33.4 10.7 70 538-607 47-126 (246)
92 PF12325 TMF_TATA_bd: TATA ele 61.6 1.4E+02 0.003 27.7 12.2 67 537-603 36-108 (120)
93 KOG4005 Transcription factor X 61.4 1.4E+02 0.003 30.8 11.8 31 546-576 91-121 (292)
94 PF09738 DUF2051: Double stran 61.3 2.4E+02 0.0052 30.5 16.8 18 585-602 148-165 (302)
95 PF05266 DUF724: Protein of un 60.9 1.4E+02 0.003 30.0 12.1 24 546-569 132-155 (190)
96 PF06156 DUF972: Protein of un 60.7 48 0.001 30.0 7.9 23 549-571 12-34 (107)
97 KOG0250 DNA repair protein RAD 60.5 2.3E+02 0.005 35.6 15.8 34 688-721 658-701 (1074)
98 TIGR02894 DNA_bind_RsfA transc 59.9 1.7E+02 0.0038 28.4 12.7 41 549-589 101-141 (161)
99 PF11559 ADIP: Afadin- and alp 59.4 1.7E+02 0.0036 28.0 14.4 53 537-589 65-117 (151)
100 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.9 1.2E+02 0.0025 28.5 10.6 59 540-598 61-119 (132)
101 PF07106 TBPIP: Tat binding pr 58.6 50 0.0011 32.3 8.4 24 689-712 143-166 (169)
102 PF04111 APG6: Autophagy prote 58.2 1.2E+02 0.0025 33.1 11.9 29 538-566 64-92 (314)
103 TIGR02680 conserved hypothetic 57.9 5.7E+02 0.012 33.8 22.7 29 689-717 457-485 (1353)
104 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.0 1.7E+02 0.0037 27.4 12.4 55 551-605 58-112 (132)
105 PF09304 Cortex-I_coil: Cortex 56.8 1.3E+02 0.0027 27.3 9.6 31 549-579 41-71 (107)
106 PF06637 PV-1: PV-1 protein (P 56.6 2.2E+02 0.0048 31.4 13.2 20 536-555 297-316 (442)
107 KOG4360 Uncharacterized coiled 56.2 3.5E+02 0.0076 31.2 15.0 18 540-557 235-252 (596)
108 TIGR03752 conj_TIGR03752 integ 56.2 1.7E+02 0.0037 33.4 12.8 46 529-574 57-102 (472)
109 TIGR02168 SMC_prok_B chromosom 56.1 5.4E+02 0.012 32.9 19.9 14 385-398 125-138 (1179)
110 KOG0804 Cytoplasmic Zn-finger 56.0 1.3E+02 0.0028 33.9 11.6 70 531-600 382-451 (493)
111 PRK12705 hypothetical protein; 56.0 2.5E+02 0.0055 32.7 14.6 22 650-671 272-293 (508)
112 PRK12704 phosphodiesterase; Pr 55.9 1.5E+02 0.0033 34.6 13.1 7 694-700 289-295 (520)
113 TIGR03319 YmdA_YtgF conserved 55.1 1.6E+02 0.0035 34.4 13.1 22 652-673 280-301 (514)
114 PF04859 DUF641: Plant protein 55.1 57 0.0012 30.7 7.6 53 529-581 78-130 (131)
115 KOG2129 Uncharacterized conser 54.9 2E+02 0.0044 32.0 12.6 162 492-665 81-266 (552)
116 PF07888 CALCOCO1: Calcium bin 54.6 1.5E+02 0.0033 34.6 12.4 52 538-589 185-236 (546)
117 PF00038 Filament: Intermediat 54.4 1.6E+02 0.0035 31.5 12.4 13 293-305 49-61 (312)
118 PF05529 Bap31: B-cell recepto 54.1 2.2E+02 0.0048 28.3 12.4 12 476-487 89-100 (192)
119 PF15290 Syntaphilin: Golgi-lo 53.7 2.1E+02 0.0046 30.3 12.0 36 543-578 73-108 (305)
120 PF03962 Mnd1: Mnd1 family; I 53.6 91 0.002 31.2 9.4 9 543-551 74-82 (188)
121 PF08317 Spc7: Spc7 kinetochor 53.6 94 0.002 33.9 10.4 62 537-598 208-269 (325)
122 PF00261 Tropomyosin: Tropomyo 53.5 1.5E+02 0.0033 30.7 11.5 44 542-585 159-202 (237)
123 PF10481 CENP-F_N: Cenp-F N-te 53.5 1.1E+02 0.0024 32.2 9.9 38 653-691 167-206 (307)
124 PRK13169 DNA replication intia 53.2 77 0.0017 28.9 7.9 21 550-570 13-33 (110)
125 TIGR02449 conserved hypothetic 53.1 1.2E+02 0.0027 24.8 8.3 37 550-586 26-62 (65)
126 KOG4427 E3 ubiquitin protein l 52.6 1.9E+02 0.0042 34.7 12.7 40 477-516 12-51 (1096)
127 PF10186 Atg14: UV radiation r 52.5 2.8E+02 0.0062 29.2 13.9 11 687-697 282-292 (302)
128 KOG4673 Transcription factor T 52.3 1.9E+02 0.0041 34.4 12.4 56 537-592 710-765 (961)
129 PF13851 GAS: Growth-arrest sp 52.2 2.5E+02 0.0054 28.4 12.4 51 539-589 87-137 (201)
130 PF13094 CENP-Q: CENP-Q, a CEN 52.2 1.6E+02 0.0034 28.5 10.7 63 541-603 23-85 (160)
131 KOG2391 Vacuolar sorting prote 52.0 90 0.002 33.9 9.3 20 300-319 128-147 (365)
132 PF06818 Fez1: Fez1; InterPro 51.8 1.9E+02 0.0042 29.3 11.2 76 534-609 27-105 (202)
133 TIGR03185 DNA_S_dndD DNA sulfu 51.3 1.6E+02 0.0035 35.4 12.7 9 478-486 171-179 (650)
134 PF09726 Macoilin: Transmembra 51.3 1.6E+02 0.0034 35.8 12.4 40 540-579 462-501 (697)
135 PRK00106 hypothetical protein; 51.2 2.1E+02 0.0046 33.5 13.1 46 651-702 300-347 (535)
136 PF09744 Jnk-SapK_ap_N: JNK_SA 51.1 2.3E+02 0.005 27.6 11.4 50 549-598 47-96 (158)
137 KOG0971 Microtubule-associated 50.0 1.7E+02 0.0038 35.8 12.0 27 692-718 564-593 (1243)
138 PF10805 DUF2730: Protein of u 50.0 1.7E+02 0.0038 26.3 9.8 52 536-587 40-93 (106)
139 COG2433 Uncharacterized conser 49.9 1.6E+02 0.0034 34.6 11.4 10 654-663 579-588 (652)
140 KOG0976 Rho/Rac1-interacting s 49.5 1.6E+02 0.0035 35.5 11.5 60 532-591 100-159 (1265)
141 PF10146 zf-C4H2: Zinc finger- 49.4 3.2E+02 0.0069 28.3 12.8 36 547-582 34-69 (230)
142 PF10168 Nup88: Nuclear pore c 49.3 1.1E+02 0.0025 37.1 10.9 19 310-328 423-441 (717)
143 TIGR03319 YmdA_YtgF conserved 49.1 4.9E+02 0.011 30.4 17.9 16 698-713 280-295 (514)
144 PF10168 Nup88: Nuclear pore c 49.1 2.1E+02 0.0046 34.9 13.1 23 220-242 243-265 (717)
145 TIGR02169 SMC_prok_A chromosom 48.9 3.8E+02 0.0082 34.3 16.5 13 29-41 39-51 (1164)
146 PF06632 XRCC4: DNA double-str 48.4 2E+02 0.0044 31.6 11.8 56 550-605 149-208 (342)
147 TIGR02168 SMC_prok_B chromosom 48.4 3.9E+02 0.0085 34.1 16.5 14 28-41 38-51 (1179)
148 PF05010 TACC: Transforming ac 47.8 3.2E+02 0.007 27.8 13.9 77 530-606 82-158 (207)
149 PRK00106 hypothetical protein; 47.7 2.6E+02 0.0055 32.8 13.0 17 698-714 301-317 (535)
150 PF07106 TBPIP: Tat binding pr 47.2 97 0.0021 30.2 8.4 36 531-566 72-107 (169)
151 KOG0377 Protein serine/threoni 47.0 26 0.00056 39.1 4.5 19 474-492 19-37 (631)
152 PF10779 XhlA: Haemolysin XhlA 46.8 1.2E+02 0.0027 25.1 7.7 46 543-588 4-49 (71)
153 KOG1003 Actin filament-coating 45.1 1.9E+02 0.0041 29.0 9.7 39 542-580 8-46 (205)
154 COG3074 Uncharacterized protei 44.9 1.8E+02 0.0039 24.1 10.4 33 543-575 9-41 (79)
155 PF11932 DUF3450: Protein of u 44.9 3.8E+02 0.0083 27.9 15.1 46 541-586 52-97 (251)
156 PF10805 DUF2730: Protein of u 44.7 2.4E+02 0.0051 25.4 12.7 53 538-590 35-89 (106)
157 KOG0243 Kinesin-like protein [ 44.6 3.2E+02 0.007 34.3 13.6 67 541-607 479-548 (1041)
158 KOG4403 Cell surface glycoprot 43.9 3.2E+02 0.007 30.7 12.1 75 532-609 253-327 (575)
159 PF07798 DUF1640: Protein of u 43.8 3.3E+02 0.0071 26.8 13.7 26 579-604 126-151 (177)
160 PF05377 FlaC_arch: Flagella a 43.6 1.1E+02 0.0024 24.3 6.3 32 543-574 5-36 (55)
161 PF12072 DUF3552: Domain of un 42.8 3.7E+02 0.008 27.1 18.4 13 453-465 12-24 (201)
162 PRK15422 septal ring assembly 42.7 2.1E+02 0.0047 24.4 9.4 29 553-581 26-54 (79)
163 TIGR03752 conj_TIGR03752 integ 42.7 1.7E+02 0.0038 33.4 10.3 42 540-581 61-102 (472)
164 KOG4603 TBP-1 interacting prot 42.6 2.3E+02 0.005 27.8 9.6 34 531-564 79-112 (201)
165 PF00170 bZIP_1: bZIP transcri 42.4 1.5E+02 0.0032 23.9 7.4 27 550-576 31-57 (64)
166 PF07888 CALCOCO1: Calcium bin 41.5 2.3E+02 0.0051 33.1 11.3 33 536-568 204-236 (546)
167 PRK10361 DNA recombination pro 41.5 6E+02 0.013 29.3 14.5 44 553-596 75-118 (475)
168 PF08763 Ca_chan_IQ: Voltage g 41.5 30 0.00066 24.7 2.6 18 473-490 10-27 (35)
169 TIGR03185 DNA_S_dndD DNA sulfu 41.4 1.7E+02 0.0036 35.3 10.8 7 692-698 422-428 (650)
170 PF10205 KLRAQ: Predicted coil 40.6 2.7E+02 0.0059 25.0 11.4 41 549-589 30-70 (102)
171 PF10498 IFT57: Intra-flagella 40.0 5.6E+02 0.012 28.4 14.3 117 482-600 218-344 (359)
172 PF06810 Phage_GP20: Phage min 40.0 2.7E+02 0.0058 27.0 10.0 40 536-575 25-67 (155)
173 PF05667 DUF812: Protein of un 40.0 2.8E+02 0.0061 33.0 12.0 46 536-581 326-371 (594)
174 KOG0995 Centromere-associated 39.8 6.8E+02 0.015 29.3 15.0 31 691-721 467-497 (581)
175 PF05667 DUF812: Protein of un 39.7 2.8E+02 0.0062 32.9 12.0 10 224-233 79-88 (594)
176 PF05008 V-SNARE: Vesicle tran 39.7 1.7E+02 0.0036 24.5 7.7 53 537-589 24-77 (79)
177 smart00787 Spc7 Spc7 kinetocho 39.6 2.2E+02 0.0048 30.9 10.3 10 305-314 14-23 (312)
178 TIGR02894 DNA_bind_RsfA transc 39.4 2E+02 0.0043 28.0 8.7 28 542-569 108-135 (161)
179 PF12777 MT: Microtubule-bindi 39.1 2.6E+02 0.0057 30.7 11.1 20 690-709 241-260 (344)
180 PF06810 Phage_GP20: Phage min 39.1 3.6E+02 0.0079 26.1 10.7 55 542-596 24-81 (155)
181 PF15272 BBP1_C: Spindle pole 38.7 4.3E+02 0.0093 26.7 12.6 46 556-601 104-149 (196)
182 PF06409 NPIP: Nuclear pore co 38.4 3.4E+02 0.0073 28.0 10.5 41 553-593 135-175 (265)
183 KOG0243 Kinesin-like protein [ 38.2 3.8E+02 0.0082 33.8 12.8 27 654-680 630-656 (1041)
184 PF05278 PEARLI-4: Arabidopsis 38.0 2.2E+02 0.0048 30.1 9.6 17 349-365 87-103 (269)
185 KOG0996 Structural maintenance 37.9 5.5E+02 0.012 32.8 14.0 119 494-612 477-598 (1293)
186 PF00170 bZIP_1: bZIP transcri 37.8 2.1E+02 0.0046 22.9 8.6 29 542-570 30-58 (64)
187 smart00338 BRLZ basic region l 37.5 1.3E+02 0.0029 24.2 6.4 30 549-578 30-59 (65)
188 PF00261 Tropomyosin: Tropomyo 37.3 4.9E+02 0.011 26.9 13.0 37 533-569 122-158 (237)
189 PF14915 CCDC144C: CCDC144C pr 37.0 3.8E+02 0.0081 28.8 11.0 57 532-588 173-229 (305)
190 PTZ00266 NIMA-related protein 36.7 4.1E+02 0.0088 33.8 13.2 10 119-128 97-106 (1021)
191 COG1196 Smc Chromosome segrega 36.6 7.9E+02 0.017 31.9 16.4 21 687-707 966-986 (1163)
192 PF05377 FlaC_arch: Flagella a 36.4 1.6E+02 0.0035 23.4 6.2 36 547-582 2-37 (55)
193 PF10146 zf-C4H2: Zinc finger- 35.8 5.2E+02 0.011 26.8 12.6 63 540-606 41-103 (230)
194 PF02841 GBP_C: Guanylate-bind 35.5 2.7E+02 0.0058 29.9 10.3 10 497-506 174-183 (297)
195 PF10212 TTKRSYEDQ: Predicted 35.5 4.1E+02 0.009 30.8 11.9 21 354-374 281-301 (518)
196 PF09789 DUF2353: Uncharacteri 35.3 5.6E+02 0.012 27.9 12.4 21 589-609 201-221 (319)
197 KOG0018 Structural maintenance 35.2 7.1E+02 0.015 31.5 14.3 46 544-589 302-347 (1141)
198 PF07111 HCR: Alpha helical co 35.0 4E+02 0.0087 32.0 11.8 75 533-607 530-605 (739)
199 PF00769 ERM: Ezrin/radixin/mo 35.0 5.1E+02 0.011 27.0 11.9 34 555-588 57-90 (246)
200 KOG4571 Activating transcripti 34.9 2E+02 0.0044 30.6 8.7 32 549-580 252-283 (294)
201 PF03938 OmpH: Outer membrane 34.7 3.3E+02 0.0071 25.9 9.9 12 499-510 22-33 (158)
202 COG5185 HEC1 Protein involved 34.7 7.5E+02 0.016 28.3 13.3 16 651-666 457-472 (622)
203 KOG4603 TBP-1 interacting prot 34.4 2.9E+02 0.0062 27.2 8.9 20 536-555 91-110 (201)
204 KOG0250 DNA repair protein RAD 34.3 1.1E+03 0.023 30.0 21.0 16 708-723 709-724 (1074)
205 PRK04863 mukB cell division pr 34.1 9.4E+02 0.02 32.1 16.3 119 489-607 334-465 (1486)
206 PF09738 DUF2051: Double stran 34.1 3.7E+02 0.0079 29.1 10.8 10 705-714 286-295 (302)
207 KOG2891 Surface glycoprotein [ 33.8 5.9E+02 0.013 26.9 12.5 26 564-589 398-423 (445)
208 PRK00409 recombination and DNA 33.6 3.7E+02 0.008 33.2 12.1 17 226-242 218-235 (782)
209 PRK00888 ftsB cell division pr 33.6 1.6E+02 0.0036 26.5 6.9 29 543-571 32-60 (105)
210 PRK00846 hypothetical protein; 33.6 3E+02 0.0066 23.4 8.4 25 551-575 12-36 (77)
211 KOG0933 Structural maintenance 33.6 9.2E+02 0.02 30.4 14.7 16 28-43 40-55 (1174)
212 PF05837 CENP-H: Centromere pr 33.5 3.6E+02 0.0078 24.3 9.8 34 539-572 11-44 (106)
213 PF02403 Seryl_tRNA_N: Seryl-t 33.4 3.5E+02 0.0075 24.1 10.0 55 535-589 33-90 (108)
214 PF06156 DUF972: Protein of un 33.4 2.9E+02 0.0063 25.1 8.4 44 533-576 10-53 (107)
215 PF11559 ADIP: Afadin- and alp 33.2 4.3E+02 0.0093 25.1 14.5 13 543-555 78-90 (151)
216 PF15035 Rootletin: Ciliary ro 33.1 3.5E+02 0.0076 27.0 9.8 60 540-599 62-121 (182)
217 PF10234 Cluap1: Clusterin-ass 33.1 3.6E+02 0.0079 28.6 10.3 56 537-592 175-237 (267)
218 PF15254 CCDC14: Coiled-coil d 32.8 6E+02 0.013 31.0 12.8 15 591-605 508-522 (861)
219 PF05278 PEARLI-4: Arabidopsis 32.7 5.6E+02 0.012 27.2 11.5 6 405-410 105-110 (269)
220 TIGR01069 mutS2 MutS2 family p 32.6 3.8E+02 0.0082 33.1 12.0 17 226-242 213-230 (771)
221 PF14197 Cep57_CLD_2: Centroso 32.2 3E+02 0.0064 22.9 10.5 44 537-580 4-47 (69)
222 PF15188 CCDC-167: Coiled-coil 32.0 2.7E+02 0.0058 24.2 7.5 56 533-588 7-65 (85)
223 PF07439 DUF1515: Protein of u 32.0 3.9E+02 0.0085 24.2 8.8 50 553-602 9-58 (112)
224 PHA02562 46 endonuclease subun 31.8 4E+02 0.0087 31.1 11.9 20 645-664 467-486 (562)
225 PF09730 BicD: Microtubule-ass 31.8 5.8E+02 0.013 31.1 12.9 61 535-595 80-146 (717)
226 PF10883 DUF2681: Protein of u 31.6 2.4E+02 0.0051 24.7 7.2 29 554-582 32-60 (87)
227 TIGR03545 conserved hypothetic 31.6 2.8E+02 0.0061 32.7 10.2 11 656-666 478-488 (555)
228 PF08232 Striatin: Striatin fa 31.4 4.1E+02 0.0089 25.0 9.5 22 538-559 25-46 (134)
229 TIGR00219 mreC rod shape-deter 31.3 1.2E+02 0.0027 32.4 6.7 24 553-576 67-90 (283)
230 PRK10636 putative ABC transpor 31.2 2.1E+02 0.0046 34.3 9.5 9 181-189 170-178 (638)
231 KOG4809 Rab6 GTPase-interactin 31.2 4.5E+02 0.0097 30.6 11.0 58 532-589 332-389 (654)
232 COG3879 Uncharacterized protei 31.1 3E+02 0.0066 28.7 9.1 6 599-604 97-102 (247)
233 PRK00888 ftsB cell division pr 31.1 1.8E+02 0.0038 26.3 6.7 22 549-570 31-52 (105)
234 KOG4005 Transcription factor X 31.0 6.2E+02 0.013 26.2 11.8 50 540-589 92-141 (292)
235 PF15369 KIAA1328: Uncharacter 31.0 7.3E+02 0.016 27.0 12.8 57 546-602 34-90 (328)
236 TIGR02169 SMC_prok_A chromosom 31.0 1.2E+03 0.027 29.7 21.8 14 385-398 123-136 (1164)
237 PF05529 Bap31: B-cell recepto 30.9 5.4E+02 0.012 25.5 12.6 11 451-461 90-100 (192)
238 COG1382 GimC Prefoldin, chaper 30.8 4.4E+02 0.0095 24.4 11.4 30 561-590 72-101 (119)
239 PF06936 Selenoprotein_S: Sele 30.7 2.4E+02 0.0051 28.4 8.1 6 583-588 108-113 (190)
240 PF08172 CASP_C: CASP C termin 30.1 2.4E+02 0.0052 29.6 8.4 44 533-576 81-124 (248)
241 COG1842 PspA Phage shock prote 29.4 6.5E+02 0.014 26.0 11.8 118 500-621 47-164 (225)
242 PF10212 TTKRSYEDQ: Predicted 28.9 5.8E+02 0.013 29.6 11.7 16 293-308 263-278 (518)
243 PRK10361 DNA recombination pro 28.6 5.8E+02 0.013 29.4 11.7 21 582-602 138-158 (475)
244 KOG0377 Protein serine/threoni 28.4 60 0.0013 36.3 3.7 19 423-441 17-35 (631)
245 PF10267 Tmemb_cc2: Predicted 28.3 4.6E+02 0.01 29.5 10.7 37 564-600 249-285 (395)
246 PF15619 Lebercilin: Ciliary p 28.3 6.1E+02 0.013 25.5 10.7 26 543-568 123-148 (194)
247 PF14662 CCDC155: Coiled-coil 28.2 6.3E+02 0.014 25.4 12.8 40 533-572 104-143 (193)
248 PRK11546 zraP zinc resistance 28.2 4E+02 0.0087 25.5 8.7 27 538-564 54-80 (143)
249 PF04849 HAP1_N: HAP1 N-termin 28.0 5.9E+02 0.013 27.6 10.9 13 536-548 239-251 (306)
250 COG4942 Membrane-bound metallo 27.7 9.4E+02 0.02 27.3 21.4 6 478-483 121-126 (420)
251 PRK12705 hypothetical protein; 27.7 1E+03 0.022 27.7 16.5 8 585-592 151-158 (508)
252 KOG2891 Surface glycoprotein [ 27.4 7.6E+02 0.016 26.1 11.8 27 570-596 397-423 (445)
253 KOG2077 JNK/SAPK-associated pr 27.4 3.9E+02 0.0084 31.2 9.8 37 535-571 340-376 (832)
254 PRK13169 DNA replication intia 27.4 4.2E+02 0.0092 24.2 8.4 44 533-576 10-53 (110)
255 KOG0976 Rho/Rac1-interacting s 27.4 4.3E+02 0.0094 32.2 10.4 30 537-566 119-148 (1265)
256 KOG4360 Uncharacterized coiled 27.1 7.2E+02 0.016 28.7 11.7 9 497-505 213-221 (596)
257 PHA02047 phage lambda Rz1-like 26.8 4.4E+02 0.0095 23.4 7.9 44 558-601 33-76 (101)
258 KOG4343 bZIP transcription fac 26.8 96 0.0021 35.6 5.0 43 537-579 301-343 (655)
259 KOG3433 Protein involved in me 26.8 6.5E+02 0.014 25.1 10.3 47 536-582 79-125 (203)
260 KOG4001 Axonemal dynein light 26.7 5.7E+02 0.012 25.9 9.7 65 537-601 184-252 (259)
261 KOG3091 Nuclear pore complex, 26.6 4.3E+02 0.0093 30.4 9.9 14 586-599 413-426 (508)
262 KOG4657 Uncharacterized conser 26.6 7.3E+02 0.016 25.6 13.5 29 559-587 93-121 (246)
263 KOG0612 Rho-associated, coiled 26.2 5E+02 0.011 33.2 11.1 38 218-255 212-254 (1317)
264 PF10473 CENP-F_leu_zip: Leuci 26.1 5.8E+02 0.013 24.3 17.2 52 532-583 53-104 (140)
265 PF14282 FlxA: FlxA-like prote 26.1 2.1E+02 0.0046 25.7 6.3 55 551-605 18-72 (106)
266 PHA02562 46 endonuclease subun 26.0 3.9E+02 0.0084 31.2 10.4 6 198-203 43-48 (562)
267 PRK10636 putative ABC transpor 25.7 3.5E+02 0.0076 32.5 10.0 10 8-17 17-26 (638)
268 PF10234 Cluap1: Clusterin-ass 25.6 5E+02 0.011 27.6 9.8 14 352-365 3-16 (267)
269 KOG0933 Structural maintenance 25.4 1.1E+03 0.023 29.8 13.5 18 705-722 395-412 (1174)
270 PRK00846 hypothetical protein; 25.4 4.3E+02 0.0093 22.5 10.0 38 545-582 13-50 (77)
271 PRK05431 seryl-tRNA synthetase 25.3 4.6E+02 0.0099 29.8 10.3 6 676-681 191-196 (425)
272 PF05483 SCP-1: Synaptonemal c 25.2 1.2E+03 0.026 28.1 13.4 58 533-590 589-646 (786)
273 KOG0241 Kinesin-like protein [ 25.0 4.1E+02 0.009 33.0 9.8 65 536-600 369-434 (1714)
274 PF09744 Jnk-SapK_ap_N: JNK_SA 25.0 6.5E+02 0.014 24.5 11.8 31 570-600 75-105 (158)
275 PF10211 Ax_dynein_light: Axon 24.7 7.1E+02 0.015 24.9 13.5 16 393-409 9-24 (189)
276 COG3879 Uncharacterized protei 24.6 4.2E+02 0.0091 27.7 8.8 46 555-600 60-105 (247)
277 PF12329 TMF_DNA_bd: TATA elem 24.5 4.2E+02 0.0092 22.2 10.1 47 536-582 10-56 (74)
278 PF07195 FliD_C: Flagellar hoo 24.4 2.3E+02 0.005 29.3 7.2 43 560-602 194-236 (239)
279 KOG2264 Exostosin EXT1L [Signa 24.3 6E+02 0.013 29.7 10.5 7 715-721 255-261 (907)
280 TIGR00414 serS seryl-tRNA synt 24.2 4E+02 0.0087 30.2 9.6 6 676-681 193-198 (418)
281 PLN02320 seryl-tRNA synthetase 24.2 8.5E+02 0.018 28.4 12.1 28 531-558 93-120 (502)
282 PF10473 CENP-F_leu_zip: Leuci 24.1 6.3E+02 0.014 24.1 16.0 48 553-600 88-135 (140)
283 PRK13182 racA polar chromosome 23.9 4.8E+02 0.01 25.8 8.9 25 554-578 94-118 (175)
284 PF11471 Sugarporin_N: Maltopo 23.8 1.6E+02 0.0035 23.7 4.5 21 559-579 32-52 (60)
285 PF12777 MT: Microtubule-bindi 23.6 6.9E+02 0.015 27.4 11.1 18 590-607 81-98 (344)
286 PRK14127 cell division protein 23.5 2.3E+02 0.0049 25.9 5.9 23 553-575 38-60 (109)
287 PF07716 bZIP_2: Basic region 23.3 2.9E+02 0.0063 21.4 5.9 23 549-571 29-51 (54)
288 PF13935 Ead_Ea22: Ead/Ea22-li 23.0 6.4E+02 0.014 23.8 9.5 41 535-575 71-113 (139)
289 KOG3990 Uncharacterized conser 23.0 4.9E+02 0.011 27.2 8.7 34 533-566 227-260 (305)
290 COG1196 Smc Chromosome segrega 23.0 1.7E+03 0.038 28.8 19.8 15 384-398 124-138 (1163)
291 PF04977 DivIC: Septum formati 22.8 2.4E+02 0.0052 23.3 5.8 20 549-568 28-47 (80)
292 KOG3850 Predicted membrane pro 22.5 1.1E+03 0.024 26.3 11.7 13 560-572 325-337 (455)
293 KOG2629 Peroxisomal membrane a 22.4 9.8E+02 0.021 25.7 14.5 33 541-573 125-157 (300)
294 TIGR01843 type_I_hlyD type I s 22.3 1.1E+03 0.023 26.1 15.2 30 539-568 204-233 (423)
295 TIGR02338 gimC_beta prefoldin, 22.3 3.6E+02 0.0078 24.3 7.1 43 536-578 65-107 (110)
296 KOG3684 Ca2+-activated K+ chan 22.2 1.2E+03 0.026 26.7 16.8 37 479-515 346-384 (489)
297 KOG2751 Beclin-like protein [S 22.2 6.9E+02 0.015 28.3 10.4 21 649-669 373-393 (447)
298 PRK14160 heat shock protein Gr 22.1 5.3E+02 0.011 26.4 8.9 49 540-588 56-104 (211)
299 COG5185 HEC1 Protein involved 22.1 6.3E+02 0.014 28.9 10.0 35 360-394 136-174 (622)
300 PF03670 UPF0184: Uncharacteri 22.1 5.2E+02 0.011 22.4 7.7 34 538-571 26-59 (83)
301 PRK14474 F0F1 ATP synthase sub 22.1 8.4E+02 0.018 25.5 10.8 14 667-680 202-215 (250)
302 PF12709 Kinetocho_Slk19: Cent 22.0 4.4E+02 0.0095 23.0 7.0 29 543-571 47-75 (87)
303 PF01166 TSC22: TSC-22/dip/bun 21.5 1.5E+02 0.0033 23.7 3.8 11 551-561 27-37 (59)
304 PF03961 DUF342: Protein of un 21.3 5.6E+02 0.012 29.2 10.2 17 168-186 29-45 (451)
305 KOG0994 Extracellular matrix g 21.3 1.9E+03 0.04 28.5 19.4 17 532-548 1620-1636(1758)
306 PRK13182 racA polar chromosome 21.1 8.1E+02 0.018 24.2 10.9 22 538-559 92-113 (175)
307 PF14511 RE_EcoO109I: Type II 21.1 1.2E+02 0.0027 30.6 4.1 34 669-705 101-134 (200)
308 COG4372 Uncharacterized protei 21.1 1.2E+03 0.026 26.1 12.5 95 511-605 80-176 (499)
309 PF12999 PRKCSH-like: Glucosid 21.0 5.1E+02 0.011 25.7 8.3 10 591-600 160-169 (176)
310 PF04880 NUDE_C: NUDE protein, 20.9 1.6E+02 0.0035 28.9 4.8 18 551-568 6-23 (166)
311 KOG0982 Centrosomal protein Nu 20.8 1.2E+03 0.027 26.3 11.8 16 651-666 448-463 (502)
312 PRK01919 tatB sec-independent 20.6 8.2E+02 0.018 24.1 12.3 29 576-604 64-92 (169)
313 PRK14161 heat shock protein Gr 20.4 6.1E+02 0.013 25.2 8.8 44 544-587 18-61 (178)
314 PF07334 IFP_35_N: Interferon- 20.0 1.9E+02 0.0042 24.5 4.4 16 556-571 4-19 (76)
315 PF12004 DUF3498: Domain of un 20.0 35 0.00075 39.3 0.0 6 574-579 416-421 (495)
316 PF06818 Fez1: Fez1; InterPro 20.0 9.3E+02 0.02 24.5 10.8 54 536-589 8-61 (202)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.4e-121 Score=1065.96 Aligned_cols=495 Identities=41% Similarity=0.685 Sum_probs=453.3
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|||||||||||+|..+. ++.+.+.+++.++.+|+|||||+..|.++|+.|.|++|+|.|.+++|..||...||+|||+|
T Consensus 326 iLAaILhiGNIef~~~r-~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~l 404 (1463)
T COG5022 326 ILAAILHIGNIEFKEDR-NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKAL 404 (1463)
T ss_pred HHHHHHhhcceeeeecc-cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHH
Confidence 69999999999998654 45778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|++||+|||++||.+|..+.. ..+|||||||||||+|++|||||||||||||||||+||+|||++|||||.+|||+|++
T Consensus 405 Y~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~ 483 (1463)
T COG5022 405 YSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSF 483 (1463)
T ss_pred HHHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999997644 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHhhhc-CCCcccccchhhcCCCCCCcHHHHHHHHHHcC--CCCCccCCC--CCceEEEeccceeEEeccc
Q 004543 161 VDFEDNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTG 235 (745)
Q Consensus 161 i~~~dn~~~ldLie~-kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~~~g 235 (745)
|+|.||++||||||+ .|.|||++|||||.+|.|||++|..||.+.+. +++.|..+| +..|+|+||||+|.|++.|
T Consensus 484 Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg 563 (1463)
T COG5022 484 IDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEG 563 (1463)
T ss_pred cccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccc
Confidence 999999999999997 48899999999999999999999999999876 567788765 5689999999999999999
Q ss_pred hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543 236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 314 (745)
Q Consensus 236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf 314 (745)
|++||+|+++.++++||..|+++++ .+|....... . .+.++|++++|+.||+.||++|++|+|||
T Consensus 564 ~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~-------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphy 629 (1463)
T COG5022 564 FLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-S-------------KGRFPTLGSRFKESLNSLMSTLNSTQPHY 629 (1463)
T ss_pred hhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-c-------------cCCCCcHHHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999864 7887332111 1 13569999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC------CChHHHHHHHH
Q 004543 315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAIL 388 (745)
Q Consensus 315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~------~d~~~~~~~ll 388 (745)
|||||||..|+|+.||..+|++|||||||+|+|||+|+|||.|++|+||+.||++|.|...-. .|.+.+|..||
T Consensus 630 IRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL 709 (1463)
T COG5022 630 IRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSIL 709 (1463)
T ss_pred eEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999964421 26789999999
Q ss_pred HHcCcCCcceeeccccccccccccccccccccccch-hhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004543 389 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYAL 467 (745)
Q Consensus 389 ~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~ 467 (745)
....+|+..||+|.|||||+.|+++.||++|...+. .++.||+.|||+..|++|....+.+..+|...+|+..|+....
T Consensus 710 ~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~ 789 (1463)
T COG5022 710 EELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY 789 (1463)
T ss_pred HhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc
Confidence 999999999999999999999999999999999887 5678999999999999999999999999999999999877654
Q ss_pred HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 004543 468 VLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ-SVIRGWLVRR 512 (745)
Q Consensus 468 ~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQ-s~~R~~~aRr 512 (745)
-. ..++++.||+.|+....|..|+.....++.+| ..++....+-
T Consensus 790 ~~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~ 834 (1463)
T COG5022 790 EL-KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE 834 (1463)
T ss_pred ch-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33 44689999999999999999998888888888 6666555554
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.4e-116 Score=1029.88 Aligned_cols=449 Identities=27% Similarity=0.454 Sum_probs=401.5
Q ss_pred ChhHHHhhcCcEEEEeCC---CCceeeCC--hHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDN---ENHVEPVA--DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDA 75 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~---~~~~~~~~--~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rda 75 (745)
|||||||||||+|...+. ++.+.+.+ .+.+..||.||||++++|.++||++++.+|++.|++++|++||..+||+
T Consensus 354 ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rda 433 (821)
T PTZ00014 354 ILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDS 433 (821)
T ss_pred HHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHH
Confidence 589999999999986532 24555544 5699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcC
Q 004543 76 LAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG 155 (745)
Q Consensus 76 Lak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~Eg 155 (745)
|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+|+++||+.||+||.+||
T Consensus 434 laK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~Eg 512 (821)
T PTZ00014 434 LSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEG 512 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998753 356799999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC---CCceEEEeccceeEEe
Q 004543 156 IDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYD 232 (745)
Q Consensus 156 I~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~ 232 (745)
|+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++||+|..++ +..|+|+||||+|.|+
T Consensus 513 I~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~ 592 (821)
T PTZ00014 513 ISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYC 592 (821)
T ss_pred ccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999998764 4799999999999999
Q ss_pred ccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccC
Q 004543 233 TTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTT 311 (745)
Q Consensus 233 ~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~ 311 (745)
++||++||+|+|+++++++|++|+++++ .+|.......+ ...+.+||+++|+.||+.||++|++|+
T Consensus 593 ~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-------------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ 659 (821)
T PTZ00014 593 ASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKG-------------KLAKGQLIGSQFLNQLDSLMSLINSTE 659 (821)
T ss_pred cCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccc-------------cccCCCcHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999976 57864321100 011347999999999999999999999
Q ss_pred CeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC--CChHHHHHHHHH
Q 004543 312 PHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILH 389 (745)
Q Consensus 312 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~--~d~~~~~~~ll~ 389 (745)
||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|.+...+. .|+++.|+.||.
T Consensus 660 phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~ 739 (821)
T PTZ00014 660 PHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLE 739 (821)
T ss_pred CeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876543 489999999999
Q ss_pred HcCcCCcceeeccccccccccccccccccccccch----hhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHH
Q 004543 390 QFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH----GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRK 463 (745)
Q Consensus 390 ~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~----aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr 463 (745)
.+++++++|++|+||||||.+.+..|+..+...+. .+..||++||||++|+.|++++.++++||++||||++++
T Consensus 740 ~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 740 RSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887666543 345666666666666666666666666666666666554
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.8e-110 Score=970.46 Aligned_cols=417 Identities=86% Similarity=1.317 Sum_probs=389.3
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|||||||||||+|...++++.+.+.+.+.+..||.||||++++|.++||++++.++|+.+.+++|++||.++||+|||+|
T Consensus 261 iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~l 340 (677)
T cd01383 261 MLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSI 340 (677)
T ss_pred HHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHH
Confidence 68999999999999877767778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|++||+|||.+||.+|.++...+..+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|++
T Consensus 341 Y~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~ 420 (677)
T cd01383 341 YASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTK 420 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999876556789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCCCCceEEEeccceeEEeccchhhhh
Q 004543 161 VDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKN 240 (745)
Q Consensus 161 i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~~~gfleKN 240 (745)
|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++||+|..+++..|+|+||||+|.|+++||++||
T Consensus 421 i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN 500 (677)
T cd01383 421 VEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKN 500 (677)
T ss_pred ccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCceEEEEeccceeecCCChHHhc
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cccccHHHHHHHhhcCCchhHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCC
Q 004543 241 RDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKP 320 (745)
Q Consensus 241 ~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkP 320 (745)
+|.++.+++++|++|++++..+|...+...+. ..++..+.++...+..||+++|+.||+.||+.|++|+|||||||||
T Consensus 501 rD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~--~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKP 578 (677)
T cd01383 501 RDLLHSDSIQLLSSCKCQLPQLFASSMLIQSP--VVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKP 578 (677)
T ss_pred cccccHHHHHHHHhCchHHHHHHHhhhhcccc--ccccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999765433221 1111112222344578999999999999999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCChHHHHHHHHHHcCcCCcceee
Q 004543 321 NNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQV 400 (745)
Q Consensus 321 N~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~y~v 400 (745)
|+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++......|+++.|+.||+.+++++++|++
T Consensus 579 N~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~~~~~il~~~~~~~~~~~~ 658 (677)
T cd01383 579 NNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQV 658 (677)
T ss_pred ccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCHHHHHHHHHHhcCCCcccEEe
Confidence 99999999999999999999999999999999999999999999999999998877778999999999999999999999
Q ss_pred ccccccccccccccccccc
Q 004543 401 GYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 401 G~tkVFlr~g~l~~Le~~r 419 (745)
|+||||||.+++..||..|
T Consensus 659 GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 659 GYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccceEEecCcHHHHHhhcC
Confidence 9999999999999999875
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.4e-107 Score=931.00 Aligned_cols=491 Identities=49% Similarity=0.805 Sum_probs=458.4
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
+||||||||||+|...++++.+...++ .+..+|.||||+++.|...|+.|.+.++++.|+++++..+|...||+|||.|
T Consensus 265 lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~i 343 (862)
T KOG0160|consen 265 LLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQL 343 (862)
T ss_pred HHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHH
Confidence 589999999999998776644444444 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|++||+|+|+.||.+|..+......+||||||||||.|+.|||||||||||||+||++||+|+|+.||+||..|+|+|+.
T Consensus 344 ys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ 423 (862)
T KOG0160|consen 344 YSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSG 423 (862)
T ss_pred HHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999876667789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCCC--CceEEEeccceeEEeccchhh
Q 004543 161 VDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLE 238 (745)
Q Consensus 161 i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~--~~F~I~HyaG~V~Y~~~gfle 238 (745)
|+|.||++|+++|++ |.|+++||||+|++|.++|++|..||.+.+.+|++|.+++. ..|+|.||||+|.|++.||++
T Consensus 424 ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~ 502 (862)
T KOG0160|consen 424 IEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLE 502 (862)
T ss_pred ccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhcc
Confidence 999999999999999 89999999999999999999999999999999999998874 589999999999999999999
Q ss_pred hhcccccHHHHHHHhhcCCchhHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeec
Q 004543 239 KNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCI 318 (745)
Q Consensus 239 KN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCI 318 (745)
||+|++++++++++..|++++...+...+..++. +.+++.||+++|+.+|..||.+|++|+|||||||
T Consensus 503 knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~------------~~~~~~tv~s~fk~~l~~Lm~~l~~t~phyirci 570 (862)
T KOG0160|consen 503 KNRDYVSDELIDLLLASDCHFVAGLAPPLRADSS------------AKSKRSTVGSQFKLQLISLMETLNSTPPHYIRCI 570 (862)
T ss_pred CCccccCHHHHhhhhhcccchHHHhccchhcchh------------hhhhcccHHHHHHHHHHHHHHHhcCCCCCCceee
Confidence 9999999999999999999987655443322211 2456799999999999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCChHHHHHHHHHHcCcCCcce
Q 004543 319 KPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMY 398 (745)
Q Consensus 319 kPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~y 398 (745)
|||+.+.|..||..+|++||+||||||+|||+++|||.|.+|.||+.||++|+| .....|+++.|+.+|+.++++ .|
T Consensus 571 kPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~~~~~~~~~~~il~~~~~~--~y 647 (862)
T KOG0160|consen 571 KPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDSASDDLSLCKVILEKLGLE--LY 647 (862)
T ss_pred CcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chhcccchHHHHHHHHHhchh--ce
Confidence 999999999999999999999999999999999999999999999999999999 444567799999999999987 99
Q ss_pred eeccccccccccccccccccccccchhh-hhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 004543 399 QVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVV 477 (745)
Q Consensus 399 ~vG~tkVFlr~g~l~~Le~~r~~~l~aa-~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~~~~~~~Aa~~ 477 (745)
++|+|+||++.|+++.|+..|...+.++ +.||+.+|||..|+.|..++++++.||+.+||+++|+.. + ...||+.
T Consensus 648 q~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~--~--~~~aai~ 723 (862)
T KOG0160|consen 648 QIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET--E--REAAAIG 723 (862)
T ss_pred eeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh--H--HHHHHHH
Confidence 9999999999999999999999998865 469999999999999999999999999999999999922 2 5679999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004543 478 IQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 512 (745)
Q Consensus 478 IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr 512 (745)
||+.||++..|+.|...+.+++.||+.+|++.+|+
T Consensus 724 ~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 724 IQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998
No 5
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-107 Score=884.27 Aligned_cols=492 Identities=33% Similarity=0.558 Sum_probs=441.4
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|+|||||||||.|...++ ..-+++...+..+|+||++.+++|.++||+|++-++||.+.+++|+.||.++||||||+|
T Consensus 269 iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKai 346 (1001)
T KOG0164|consen 269 IIAAVLHLGNVEFADNED--SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAI 346 (1001)
T ss_pred HHHHHHhccceEEeecCc--ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHH
Confidence 589999999999986543 334455689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCC----CccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCC
Q 004543 81 YACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGI 156 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI 156 (745)
|+|||+|||.+||.+|.+... .....||+|||||||+|+.|||||||||||||+|||.|++-+++.|||||..|||
T Consensus 347 Y~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI 426 (1001)
T KOG0164|consen 347 YSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGI 426 (1001)
T ss_pred HHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCC
Confidence 999999999999999987532 2236899999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcHhHHHhhhcCCCcccccchhhcCCCC-CCcHHHHHHHHHHcCCCCCccCCC---------CCceEEEecc
Q 004543 157 DWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN-GTDLTFANKLKQHLNSNPCFRGER---------DKSFTVSHYA 226 (745)
Q Consensus 157 ~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~-~td~~f~~kl~~~~~~~~~~~~~~---------~~~F~I~Hya 226 (745)
.|++|+|.+|..++||+|.+..|||+||||+|+.|+ .||.+|+++|.+++++|++|.+.. -..|.|.|||
T Consensus 427 ~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYA 506 (1001)
T KOG0164|consen 427 EWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYA 506 (1001)
T ss_pred CceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEec
Confidence 999999999999999999999999999999999985 699999999999999999996531 2699999999
Q ss_pred ceeEEeccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHH
Q 004543 227 GEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQ 305 (745)
Q Consensus 227 G~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~ 305 (745)
|+|+|+|.||++||+|.|..|+-.+|.+|+++++ .+|+......... ...++|++++|+.||..||.
T Consensus 507 G~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~------------tkRP~Tagt~Fk~Sm~~Lv~ 574 (1001)
T KOG0164|consen 507 GDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEV------------TKRPPTAGTLFKNSMAALVK 574 (1001)
T ss_pred cceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhh------------hcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976 5775322111110 11348999999999999999
Q ss_pred HHhccCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCC---ChHH
Q 004543 306 RLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ---DPLS 382 (745)
Q Consensus 306 ~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~---d~~~ 382 (745)
+|.+-+|+||||||||+.+.|+.||...|.+|.+|+|+||.++++|+||.+|.+|+.|+.||+++++.+||.+ +.++
T Consensus 575 nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd 654 (1001)
T KOG0164|consen 575 NLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSDKD 654 (1001)
T ss_pred HHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCCCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 5578
Q ss_pred HHHHHHHHcCcCCcceeeccccccccccc-cccccccccccchhh-hhhhhhhhccccchhhhhhhhhhhhHHHHHHHHH
Q 004543 383 VSVAILHQFNILPEMYQVGYTKLFFRAGQ-IGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQSFIRGEK 460 (745)
Q Consensus 383 ~~~~ll~~~~~~~~~y~vG~tkVFlr~g~-l~~Le~~r~~~l~aa-~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~ 460 (745)
.|..+++..++. +++.+|+||||+|.+. +..||+.|.+++..+ +.||+.||||++|.+|++++.++++|+ |||.++
T Consensus 655 ~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K 732 (1001)
T KOG0164|consen 655 GVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYK 732 (1001)
T ss_pred HHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 888999999886 9999999999999865 899999999888764 579999999999999999999999999 888443
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHhhhhh
Q 004543 461 IRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN----------IKYSSIMIQSVIRGWLVRRCSGDIC 518 (745)
Q Consensus 461 aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~----------~~~a~i~IQs~~R~~~aRr~~~~l~ 518 (745)
.+ .++..||+.+||+..++.|.+ ++.+.-.+|..+-.|.+++..+.+-
T Consensus 733 ~k----------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf~rwra~~~~~~ip 790 (1001)
T KOG0164|consen 733 LK----------SYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELFIRWRAWQILKSIP 790 (1001)
T ss_pred HH----------HHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 467789999999999998864 5667788888888888888877663
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2e-106 Score=937.32 Aligned_cols=407 Identities=39% Similarity=0.676 Sum_probs=377.6
Q ss_pred ChhHHHhhcCcEEEEeC--CCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVID--NENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAK 78 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak 78 (745)
|||||||||||+|...+ +.+.+.+.+.+.+..||.||||++++|.++||++++.++|+.+.++++++||.++||+|||
T Consensus 256 ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak 335 (671)
T cd01381 256 LLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVK 335 (671)
T ss_pred HHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHH
Confidence 68999999999998764 2357889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcc
Q 004543 79 SIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW 158 (745)
Q Consensus 79 ~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w 158 (745)
+||++||+|||.+||.+|.++......+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|
T Consensus 336 ~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~ 415 (671)
T cd01381 336 GIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINW 415 (671)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999986544567899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC---CCceEEEeccceeEEeccc
Q 004543 159 AKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTG 235 (745)
Q Consensus 159 ~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~~~g 235 (745)
++|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|..++ +..|+|+||||+|.|+++|
T Consensus 416 ~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~g 495 (671)
T cd01381 416 QHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRG 495 (671)
T ss_pred CccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999997653 5699999999999999999
Q ss_pred hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543 236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 314 (745)
Q Consensus 236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf 314 (745)
|++||+|.++++++++|++|+++++ .+|....... .+...+..||+++|+.||+.||++|++|.|||
T Consensus 496 fleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~------------~~~~~k~~tv~~~fk~qL~~L~~~L~~t~phf 563 (671)
T cd01381 496 FLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMG------------AETRKKKPTLSSQFRRSLDLLMRTLSSCQPFF 563 (671)
T ss_pred HHHhccchhhHHHHHHHHhChHHHHHHHhccccccc------------ccccccCCcHHHHHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999999999976 5776433110 01122458999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC---CChHHHHHHHHHHc
Q 004543 315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS---QDPLSVSVAILHQF 391 (745)
Q Consensus 315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~---~d~~~~~~~ll~~~ 391 (745)
|||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++...+. .+++..|..+++.+
T Consensus 564 IRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~~~ 643 (671)
T cd01381 564 IRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAV 643 (671)
T ss_pred EEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999987653 47788999999999
Q ss_pred CcCCcceeeccccccccccccccccccc
Q 004543 392 NILPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 392 ~~~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
.+++++|++|+||||||.+.+..||..|
T Consensus 644 ~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 644 LLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred CCCcccEEeccceEEECcCHHHHHhhcC
Confidence 9999999999999999999999999765
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.8e-106 Score=940.29 Aligned_cols=415 Identities=41% Similarity=0.676 Sum_probs=378.7
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|||||||||||+|...++++.+.+.+.+.+..||.||||++++|.++||++++.++++.+.+++|++||.++||+|||+|
T Consensus 271 iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~l 350 (693)
T cd01377 271 IVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKAL 350 (693)
T ss_pred HHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHH
Confidence 69999999999999876667888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.
T Consensus 351 Y~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~ 429 (693)
T cd01377 351 YERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTF 429 (693)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999875 345689999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-CcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccC--C--CCCceEEEeccceeEEeccc
Q 004543 161 VDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRG--E--RDKSFTVSHYAGEVIYDTTG 235 (745)
Q Consensus 161 i~~~-dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~--~--~~~~F~I~HyaG~V~Y~~~g 235 (745)
|+|. ||++|||||+++|.|||++|||||++|++||++|++||++++.+|++|.. + .+..|+|+||||+|.|+++|
T Consensus 430 i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~g 509 (693)
T cd01377 430 IDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDG 509 (693)
T ss_pred cccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeecccc
Confidence 9995 99999999999999999999999999999999999999999999998732 2 24689999999999999999
Q ss_pred hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543 236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 314 (745)
Q Consensus 236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf 314 (745)
|++||+|.++++++++|++|+++++ .+|+......+. ..++.. .+...+..+||+++|+.||+.||++|++|+|||
T Consensus 510 fleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~~~~~~-~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hf 586 (693)
T cd01377 510 WLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD--GGGGGG-KKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHF 586 (693)
T ss_pred HHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc--cccccC-CCCcCCccccHHHHHHHHHHHHHHHHhccCCeE
Confidence 9999999999999999999999976 577654322110 001111 111123458999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccC--CCChHHHHHHHHHHcC
Q 004543 315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFN 392 (745)
Q Consensus 315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~--~~d~~~~~~~ll~~~~ 392 (745)
|||||||+.+.|+.||..+|++||||+||||+|+|++.|||+|++|.+|+.||++|++...+ ..|+++.|+.||+.++
T Consensus 587 IRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~ 666 (693)
T cd01377 587 VRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLE 666 (693)
T ss_pred EEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999998754 3588999999999999
Q ss_pred cCCcceeeccccccccccccccccccc
Q 004543 393 ILPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 393 ~~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
+++++|++|+||||||.+++..||..|
T Consensus 667 ~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 667 LDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred CCcccEEecCCeEeECccHHHHHhhcC
Confidence 999999999999999999999999875
No 8
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.5e-106 Score=939.25 Aligned_cols=418 Identities=45% Similarity=0.766 Sum_probs=377.5
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|||||||||||+|...++++.+...+.+.+..||.||||++++|.++||++++.+++|.+++++|++||.++||+|||+|
T Consensus 262 iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~l 341 (691)
T cd01380 262 LLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHI 341 (691)
T ss_pred HHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHH
Confidence 68999999999999776554444556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCC--CCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcc
Q 004543 81 YACLFEWLVEQINKSLAVGK--RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW 158 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~--~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w 158 (745)
|++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|
T Consensus 342 Y~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~ 421 (691)
T cd01380 342 YSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEW 421 (691)
T ss_pred HHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999752 3456799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcC--CCCCccCCC--CCceEEEeccceeEEecc
Q 004543 159 AKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTT 234 (745)
Q Consensus 159 ~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~~~ 234 (745)
+.|+|.||++|||||++ |.|||++|||||++|++||++|++||++.++ +||+|..++ +..|+|+||||+|.|+++
T Consensus 422 ~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~ 500 (691)
T cd01380 422 TFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVD 500 (691)
T ss_pred ccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccc
Confidence 99999999999999997 5899999999999999999999999999998 899998765 468999999999999999
Q ss_pred chhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCc---cC-CCccCCCCCCCCccHHHHHHHHHHHHHHHHhc
Q 004543 235 GFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPV---VG-PLYKAGGADSQKLSVATKFKGQLFQLMQRLES 309 (745)
Q Consensus 235 gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~---~~-~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~ 309 (745)
||++||+|.++.+++++|++|+++++ .+|+......+..+. .+ ..+..++.....+||+++|+.||+.||++|++
T Consensus 501 gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~ 580 (691)
T cd01380 501 GFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNS 580 (691)
T ss_pred cHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999976 577654322111000 00 00111222345689999999999999999999
Q ss_pred cCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhcccccccc-CCCChHHHHHHHH
Q 004543 310 TTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESV-ASQDPLSVSVAIL 388 (745)
Q Consensus 310 t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~-~~~d~~~~~~~ll 388 (745)
|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++... ...|+++.|+.||
T Consensus 581 t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL 660 (691)
T cd01380 581 TNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENIL 660 (691)
T ss_pred cCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876 3458899999999
Q ss_pred HHcCcCCcceeeccccccccccccccccccc
Q 004543 389 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 389 ~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
+.+.+++++|++|+||||||.+++..||..|
T Consensus 661 ~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 661 TKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999999999999999999999999999875
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.9e-106 Score=936.55 Aligned_cols=404 Identities=41% Similarity=0.662 Sum_probs=374.3
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecC----ceEEecCChhhhHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN----DTIVQNLTLSQATDTRDAL 76 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~----e~i~~~l~~~qA~~~rdaL 76 (745)
|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||++++.+++ |.+++++|++||.++||+|
T Consensus 259 ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdal 337 (674)
T cd01378 259 IVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDAL 337 (674)
T ss_pred HHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHH
Confidence 689999999999987554 34788899999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCC
Q 004543 77 AKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGI 156 (745)
Q Consensus 77 ak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI 156 (745)
||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||
T Consensus 338 ak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI 417 (674)
T cd01378 338 AKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGI 417 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986445678999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcHhHHHhhhc-CCCcccccchhhcCCC-CCCcHHHHHHHHHHcCCCCCccCC--CCCceEEEeccceeEEe
Q 004543 157 DWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFP-NGTDLTFANKLKQHLNSNPCFRGE--RDKSFTVSHYAGEVIYD 232 (745)
Q Consensus 157 ~w~~i~~~dn~~~ldLie~-kp~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~~~~~--~~~~F~I~HyaG~V~Y~ 232 (745)
+|++|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++++++||++..+ .+..|+|+||||+|.|+
T Consensus 418 ~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~ 497 (674)
T cd01378 418 KWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYS 497 (674)
T ss_pred CCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeec
Confidence 9999999999999999999 8999999999999999 999999999999999999986544 35799999999999999
Q ss_pred ccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccC
Q 004543 233 TTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTT 311 (745)
Q Consensus 233 ~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~ 311 (745)
++||++||+|.++++++++|++|+++++ .+|+......+ ..+.+||+++|+.||+.||++|++|+
T Consensus 498 ~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~--------------~~~~~tv~~~fk~qL~~Lm~~L~~t~ 563 (674)
T cd01378 498 VEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS--------------KKRPTTAGFKIKTSANALVETLMKCT 563 (674)
T ss_pred CcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc--------------cCCCCcHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999976 57763221100 11347999999999999999999999
Q ss_pred CeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccC--CCChHHHHHHHHH
Q 004543 312 PHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILH 389 (745)
Q Consensus 312 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~--~~d~~~~~~~ll~ 389 (745)
||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++...+ ..|+++.|+.||.
T Consensus 564 phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~ 643 (674)
T cd01378 564 PHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILK 643 (674)
T ss_pred CeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997643 3588999999999
Q ss_pred HcCcCCcceeecccccccccc-ccccccccc
Q 004543 390 QFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 419 (745)
Q Consensus 390 ~~~~~~~~y~vG~tkVFlr~g-~l~~Le~~r 419 (745)
.+++++++|++|+||||||.| ++..||..|
T Consensus 644 ~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 644 DLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999999999999997 688898765
No 10
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=3.8e-106 Score=933.98 Aligned_cols=406 Identities=44% Similarity=0.744 Sum_probs=373.9
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeC---ChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPV---ADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 77 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLa 77 (745)
|||||||||||+|...+..+.+.+. +.+.+..||.||||++++|.++||++++.++++.+.++++++||.++||+||
T Consensus 261 iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdala 340 (674)
T cd01384 261 VVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALA 340 (674)
T ss_pred HHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHH
Confidence 6899999999999876544444443 3589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCc
Q 004543 78 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 157 (745)
Q Consensus 78 k~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~ 157 (745)
|+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+
T Consensus 341 k~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~ 419 (674)
T cd01384 341 KTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEID 419 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998753 35679999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC--CCceEEEeccceeEEeccc
Q 004543 158 WAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTG 235 (745)
Q Consensus 158 w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~g 235 (745)
|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++||+|..++ +..|+|+||||+|.|+++|
T Consensus 420 ~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~g 499 (674)
T cd01384 420 WSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQ 499 (674)
T ss_pred CCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999998764 4699999999999999999
Q ss_pred hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543 236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 314 (745)
Q Consensus 236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf 314 (745)
|++||+|.++++++++|++|+++++ .+|+...... +...+..||+++|+.||+.||++|++|+|||
T Consensus 500 fleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-------------~~~~k~~tv~~~fk~~L~~L~~~L~~t~~hf 566 (674)
T cd01384 500 FLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-------------SKSSKFSSIGSRFKQQLQSLMETLSTTEPHY 566 (674)
T ss_pred HHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-------------ccccccccHHHHHHHHHHHHHHHHhccCCeE
Confidence 9999999999999999999999976 5776432110 1122458999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC-CChHHHHHHHHHHcCc
Q 004543 315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS-QDPLSVSVAILHQFNI 393 (745)
Q Consensus 315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~-~d~~~~~~~ll~~~~~ 393 (745)
|||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++...+. .+.++.|+.||..+++
T Consensus 567 IRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~ 646 (674)
T cd01384 567 IRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGL 646 (674)
T ss_pred EEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999877653 4788999999998765
Q ss_pred CCcceeecccccccccccccccccccccc
Q 004543 394 LPEMYQVGYTKLFFRAGQIGMLEDTRNRT 422 (745)
Q Consensus 394 ~~~~y~vG~tkVFlr~g~l~~Le~~r~~~ 422 (745)
++|++|+||||||.+++..||..|.+.
T Consensus 647 --~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 647 --KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred --CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 689999999999999999999998764
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.2e-105 Score=931.49 Aligned_cols=415 Identities=38% Similarity=0.668 Sum_probs=373.7
Q ss_pred ChhHHHhhcCcEEEEeCC--CCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAK 78 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak 78 (745)
|||||||||||+|...++ .+.+.+.+++.+..||.||||++++|.++||++++.+++|.+.++++++||.++||+|||
T Consensus 257 iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak 336 (677)
T cd01387 257 ILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAK 336 (677)
T ss_pred HHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHH
Confidence 689999999999987543 345788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcc
Q 004543 79 SIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW 158 (745)
Q Consensus 79 ~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w 158 (745)
+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|
T Consensus 337 ~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~ 414 (677)
T cd01387 337 VLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDW 414 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999874 345799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC--CCceEEEeccceeEEeccch
Q 004543 159 AKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGF 236 (745)
Q Consensus 159 ~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gf 236 (745)
+.|+|.||++|||||+++|.|||+||||||++|++||++|++|++..+++||+|..++ ...|+|+||||+|.|+++||
T Consensus 415 ~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 494 (677)
T cd01387 415 TEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKF 494 (677)
T ss_pred cccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCCh
Confidence 9999999999999999999999999999999999999999999999999999998764 46899999999999999999
Q ss_pred hhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeee
Q 004543 237 LEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI 315 (745)
Q Consensus 237 leKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfI 315 (745)
++||+|.++++++++|.+|+++++ .+|+......+.++. +....++...+.+||+++|+.||+.||+.|++|+||||
T Consensus 495 leKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~--~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfI 572 (677)
T cd01387 495 LDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL--GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFV 572 (677)
T ss_pred HHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc--cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 999999999999999999999976 467543321111110 00011112234589999999999999999999999999
Q ss_pred eecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCChHHH-HHHHHHHcCcC
Q 004543 316 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSV-SVAILHQFNIL 394 (745)
Q Consensus 316 rCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d~~~~-~~~ll~~~~~~ 394 (745)
||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++......++.+. +..+++.++++
T Consensus 573 RCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~ 652 (677)
T cd01387 573 RCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVE 652 (677)
T ss_pred EEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999976544444444 46788899999
Q ss_pred Ccceeeccccccccccccccccccc
Q 004543 395 PEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 395 ~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
+++|++|+||||||.+.+..||..|
T Consensus 653 ~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 653 PPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cccEEecceeEEEcCCHHHHHHhcC
Confidence 9999999999999999999999875
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5.2e-105 Score=931.38 Aligned_cols=408 Identities=36% Similarity=0.612 Sum_probs=371.2
Q ss_pred ChhHHHhhcCcEEEEeCCC-Cce--eeCChHHHHHHHHHcCCCHHHHHHhhccceee-----ecCceEEecCChhhhHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNE-NHV--EPVADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDT 72 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~-~~~--~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~-----~~~e~i~~~l~~~qA~~~ 72 (745)
|||||||||||+|...+.. +.+ ...+.+.+..||.||||++++|.++||++++. ++|+.+.++++++||.+.
T Consensus 287 iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~ 366 (717)
T cd01382 287 VVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNA 366 (717)
T ss_pred HHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHH
Confidence 6899999999999875432 233 34567899999999999999999999999998 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhh
Q 004543 73 RDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYI 152 (745)
Q Consensus 73 rdaLak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~ 152 (745)
||+|||+||++||+|||.+||.+|.+.. ...+||||||||||+|+.|||||||||||||+||++|++++|..||++|.
T Consensus 367 rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~ 444 (717)
T cd01382 367 RDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQ 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998643 46799999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC------------CCce
Q 004543 153 QDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSF 220 (745)
Q Consensus 153 ~EgI~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~------------~~~F 220 (745)
+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|..++ +..|
T Consensus 445 ~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 524 (717)
T cd01382 445 REGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGF 524 (717)
T ss_pred hcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999888875432 2479
Q ss_pred EEEeccceeEEeccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHH
Q 004543 221 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQ 299 (745)
Q Consensus 221 ~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~ 299 (745)
+|+||||+|.|+++||++||+|.++.+++++|++|+++++ .+|..........+ +.......||+++|+.|
T Consensus 525 ~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~--------~~~k~~~~tv~~~fk~q 596 (717)
T cd01382 525 IIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLRSLFESSTNNNDTKQ--------KAGKLSFISVGNKFKTQ 596 (717)
T ss_pred EEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHHHHhccccccccccc--------cccCccCccHHHHHHHH
Confidence 9999999999999999999999999999999999999976 57764332110000 00112357999999999
Q ss_pred HHHHHHHHhccCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCC
Q 004543 300 LFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQD 379 (745)
Q Consensus 300 L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d 379 (745)
|+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||+.|+|......|
T Consensus 597 L~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~ 676 (717)
T cd01382 597 LNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLD 676 (717)
T ss_pred HHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776678
Q ss_pred hHHHHHHHHHHcCcCCcceeecccccccccccccccccc
Q 004543 380 PLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDT 418 (745)
Q Consensus 380 ~~~~~~~ll~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~ 418 (745)
++..|+.||+.+++++++|++|+||||||.|+++.||..
T Consensus 677 ~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 677 PRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=6.7e-105 Score=927.27 Aligned_cols=414 Identities=38% Similarity=0.646 Sum_probs=373.9
Q ss_pred ChhHHHhhcCcEEEEeC---CCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVID---NENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 77 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~---~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLa 77 (745)
|||||||||||+|...+ .++.+.+.+.+.+..||.||||++++|.++||++++.++||.++++++++||.++||+||
T Consensus 267 iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdala 346 (692)
T cd01385 267 VLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMA 346 (692)
T ss_pred HHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHH
Confidence 68999999999998753 245678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC--CccceeeeeecccccccCc-CchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhc
Q 004543 78 KSIYACLFEWLVEQINKSLAVGKR--RTGRSISILDIYGFESFDR-NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQD 154 (745)
Q Consensus 78 k~LY~~LF~wlV~~iN~~L~~~~~--~~~~~IgILDi~GFE~f~~-NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~E 154 (745)
|+||++||+|||.+||.+|.+... ....+||||||||||+|+. |||||||||||||+||++|++++|+.||++|.+|
T Consensus 347 k~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~E 426 (692)
T cd01385 347 KCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGE 426 (692)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987532 2457999999999999999 9999999999999999999999999999999999
Q ss_pred CCcccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC--CCceEEEeccceeEEe
Q 004543 155 GIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYD 232 (745)
Q Consensus 155 gI~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~ 232 (745)
||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|..++ ...|+|+||||+|.|+
T Consensus 427 gI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~ 506 (692)
T cd01385 427 GITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQ 506 (692)
T ss_pred CCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeec
Confidence 99999999999999999999999999999999999999999999999999999999987653 5689999999999999
Q ss_pred ccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccC
Q 004543 233 TTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTT 311 (745)
Q Consensus 233 ~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~ 311 (745)
++||++||+|.++++++++|++|+++++ .+|.......... ...+.........||+++|+.||+.||+.|++|.
T Consensus 507 ~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~----~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~ 582 (692)
T cd01385 507 IKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRW----AVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAE 582 (692)
T ss_pred CCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccc----ccccccccCccCCcHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999976 5775322111000 0001111112347999999999999999999999
Q ss_pred CeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCChHHHHHHHHHHc
Q 004543 312 PHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQF 391 (745)
Q Consensus 312 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d~~~~~~~ll~~~ 391 (745)
||||||||||+.+.|+.||..+|++||+|+||+|+|+|++.|||+|++|.+|+.||++|+|.... ..++.|+.||+.+
T Consensus 583 ~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~~~~~--~~~~~~~~il~~~ 660 (692)
T cd01385 583 PFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLPKGAQ--SCREDISTLLSKM 660 (692)
T ss_pred CeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCccccc--chHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999987532 3456799999999
Q ss_pred CcCCcceeecccccccccccccccccccc
Q 004543 392 NILPEMYQVGYTKLFFRAGQIGMLEDTRN 420 (745)
Q Consensus 392 ~~~~~~y~vG~tkVFlr~g~l~~Le~~r~ 420 (745)
++++++|++|+||||||.+....||..-.
T Consensus 661 ~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 661 KIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred CCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 99999999999999999999999987643
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=9.3e-103 Score=912.38 Aligned_cols=406 Identities=49% Similarity=0.814 Sum_probs=376.8
Q ss_pred ChhHHHhhcCcEEEEeCCCC-ceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNEN-HVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 79 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~-~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~ 79 (745)
|||||||||||+|...++++ ...+.+.+.+..||.||||++++|.++|+++++.+++|.+++++++++|.+.||+|||+
T Consensus 265 iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~ 344 (677)
T smart00242 265 ILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKA 344 (677)
T ss_pred HHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHH
Confidence 68999999999998765433 23478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCccc
Q 004543 80 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 159 (745)
Q Consensus 80 LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~ 159 (745)
||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+
T Consensus 345 lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~ 423 (677)
T smart00242 345 LYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWT 423 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999998753 4568999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC---CCceEEEeccceeEEeccch
Q 004543 160 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGF 236 (745)
Q Consensus 160 ~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~~~gf 236 (745)
.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|..++ +..|+|+||||+|.|+++||
T Consensus 424 ~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gf 503 (677)
T smart00242 424 FIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGF 503 (677)
T ss_pred CCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccH
Confidence 999999999999999999999999999999999999999999999999999998763 57999999999999999999
Q ss_pred hhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeee
Q 004543 237 LEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI 315 (745)
Q Consensus 237 leKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfI 315 (745)
++||+|.++++++++|++|+++++ .+|+...... +......||+++|+.||+.||+.|++|+||||
T Consensus 504 leKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-------------~~~~~~~tv~~~fk~~L~~L~~~l~~t~~hfI 570 (677)
T smart00242 504 LEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNA-------------GSKKRFRTVGSQFKESLNKLMDTLNSTNPHFI 570 (677)
T ss_pred HHHccchhhHHHHHHHHhCCcHHHHHHhccccccc-------------cccCCCCcHHHHHHHHHHHHHHHHhccCCeEE
Confidence 999999999999999999999976 5776443210 01123589999999999999999999999999
Q ss_pred eecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC--CChHHHHHHHHHHcCc
Q 004543 316 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNI 393 (745)
Q Consensus 316 rCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~--~d~~~~~~~ll~~~~~ 393 (745)
||||||+.+.|+.||..+|++||+|+||||+|+|++.|||+|++|.+|+.||++|++...+. .|+++.|+.||+.+++
T Consensus 571 RCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL~~~~~ 650 (677)
T smart00242 571 RCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALLQSLGL 650 (677)
T ss_pred EEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999976653 3689999999999999
Q ss_pred CCcceeecccccccccccccccccccc
Q 004543 394 LPEMYQVGYTKLFFRAGQIGMLEDTRN 420 (745)
Q Consensus 394 ~~~~y~vG~tkVFlr~g~l~~Le~~r~ 420 (745)
++.+|++|+|||||+.+++..||..|.
T Consensus 651 ~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 651 DEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred CcccEEecCceEeECccHHHHHHhhcC
Confidence 999999999999999999999998763
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=9.6e-103 Score=902.72 Aligned_cols=382 Identities=40% Similarity=0.688 Sum_probs=355.3
Q ss_pred ChhHHHhhcCcEEEEeCC---CCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 77 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLa 77 (745)
|||||||||||+|.+.++ .+.+.+.+.+.+..||.||||++++|.++||++++.++|+.++++++++||.++||+||
T Consensus 262 iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdala 341 (653)
T cd01379 262 ILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMA 341 (653)
T ss_pred HHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHH
Confidence 689999999999987543 34678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC----CccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhh
Q 004543 78 KSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQ 153 (745)
Q Consensus 78 k~LY~~LF~wlV~~iN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~ 153 (745)
|+||++||+|||.+||.+|.+... ....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+
T Consensus 342 k~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~ 421 (653)
T cd01379 342 KALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLN 421 (653)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987532 2356999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC--CCceEEEeccceeEE
Q 004543 154 DGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIY 231 (745)
Q Consensus 154 EgI~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y 231 (745)
|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++|++..+++ +.|..++ +..|+|+||||+|.|
T Consensus 422 EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~~~~~~~~~~F~I~HyAG~V~Y 500 (653)
T cd01379 422 EGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFFWRPKRVELSFGIHHYAGKVLY 500 (653)
T ss_pred cCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCccCCCCCCCceEEEEeceeEee
Confidence 9999999999999999999999999999999999999999999999999998864 4554443 468999999999999
Q ss_pred eccchhhhhcccccHHHHHHHhhcCCchhHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccC
Q 004543 232 DTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTT 311 (745)
Q Consensus 232 ~~~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~ 311 (745)
+++||++||+|.++.+++++|++| +||+++|+.||+.||.+|.+|+
T Consensus 501 ~~~gfleKNkD~l~~~~~~ll~~S----------------------------------~tv~~~fr~~l~~L~~~l~~t~ 546 (653)
T cd01379 501 NASGFLEKNRDFLPADIVLLLRSS----------------------------------QTVASYFRYSLMDLLSKMVVGQ 546 (653)
T ss_pred cCCCHHHhccccccHHHHHHHHhC----------------------------------cHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999866 4799999999999999999999
Q ss_pred CeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccC-CCChHHHHHHHHHH
Q 004543 312 PHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-SQDPLSVSVAILHQ 390 (745)
Q Consensus 312 ~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~-~~d~~~~~~~ll~~ 390 (745)
||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||++|++.... ..+.++.|..||..
T Consensus 547 ~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~il~~ 626 (653)
T cd01379 547 PHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCALILEK 626 (653)
T ss_pred CceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999876543 34778999999998
Q ss_pred cCcCCcceeeccccccccccccccccccc
Q 004543 391 FNILPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 391 ~~~~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
+++ ++|++|+||||||.+.+..||..|
T Consensus 627 ~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 627 AKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred CCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 776 579999999999999999998764
No 16
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.9e-103 Score=848.44 Aligned_cols=447 Identities=38% Similarity=0.629 Sum_probs=407.1
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeee----cCceEEecCChhhhHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQNLTLSQATDTRDAL 76 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~----~~e~i~~~l~~~qA~~~rdaL 76 (745)
|||+|||||||.|.+. ++.+.|.+.+.++-.|.||||++..|.+.||.|.|.. ..+.+.++|+++||.+.||||
T Consensus 277 mva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAl 354 (1106)
T KOG0162|consen 277 MVAGILHLGNISFIEE--GNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDAL 354 (1106)
T ss_pred HHHHHHhccceeEEee--CCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHH
Confidence 5899999999999974 3477888999999999999999999999999999863 358999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCC
Q 004543 77 AKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGI 156 (745)
Q Consensus 77 ak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI 156 (745)
||+||.+||||||++||.+|...+.....+||||||||||+|++||||||||||.||+|||.|++.+++.|||||.+|||
T Consensus 355 akaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I 434 (1106)
T KOG0162|consen 355 AKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGI 434 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcc
Confidence 99999999999999999999865444568999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcHhHHHhhhc-CCCcccccchhhcCC----CCCCcHHHHHHHHHHcCCCCCccCCCCCceEEEeccceeEE
Q 004543 157 DWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTF----PNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIY 231 (745)
Q Consensus 157 ~w~~i~~~dn~~~ldLie~-kp~Gil~lLdee~~~----p~~td~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y 231 (745)
.|++|+|.||.-++||||. .|.||+++|||.|.. ..|.|.+|+++|...+++||+|..- ...|+|+||||+|+|
T Consensus 435 ~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~-s~~FvIkHYAGdVtY 513 (1106)
T KOG0162|consen 435 KWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESR-SNGFVIKHYAGDVTY 513 (1106)
T ss_pred cccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccc-cCceEEEEeccceee
Confidence 9999999999999999996 589999999999974 3567999999999999999999753 568999999999999
Q ss_pred eccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhcc
Q 004543 232 DTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLEST 310 (745)
Q Consensus 232 ~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t 310 (745)
|++||.+||+|.|..|++.||..|.++|+ .+|+.....++. ...+|.+++.+.|-+.|+++|..|
T Consensus 514 di~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dsk--------------rRP~Tag~kIkkqANdLVeTLmKc 579 (1106)
T KOG0162|consen 514 DIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADSK--------------RRPPTAGDKIKKQANDLVETLMKC 579 (1106)
T ss_pred ecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccccc--------------CCCCCchhhHHhhHHHHHHHHHhc
Confidence 99999999999999999999999999976 578765533221 134899999999999999999999
Q ss_pred CCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCC--ChHHHHHHHH
Q 004543 311 TPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ--DPLSVSVAIL 388 (745)
Q Consensus 311 ~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~--d~~~~~~~ll 388 (745)
.||||||||||..++|+.||...|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.|.+++.| |.+++|+.||
T Consensus 580 ~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~~~av~~il 659 (1106)
T KOG0162|consen 580 QPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDEKQAVEHIL 659 (1106)
T ss_pred CcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999976 8899999999
Q ss_pred HHcCcCCcceeecccccccccc-ccccccccccccchh-hhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 004543 389 HQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 466 (745)
Q Consensus 389 ~~~~~~~~~y~vG~tkVFlr~g-~l~~Le~~r~~~l~a-a~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~ 466 (745)
+..++++++||+|.|+||++.. .+..||++|.+.... |.+||++||.|.+|+.|.++|.-++.| .-|.+.||+|.
T Consensus 660 ~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~S 736 (1106)
T KOG0162|consen 660 RDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYS 736 (1106)
T ss_pred HhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHH
Confidence 9999999999999999999985 589999999998874 778999999999999999998765543 23566666664
Q ss_pred H
Q 004543 467 L 467 (745)
Q Consensus 467 ~ 467 (745)
-
T Consensus 737 i 737 (1106)
T KOG0162|consen 737 I 737 (1106)
T ss_pred H
Confidence 3
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.1e-101 Score=905.91 Aligned_cols=416 Identities=45% Similarity=0.745 Sum_probs=375.0
Q ss_pred ChhHHHhhcCcEEEEeCCCC--ceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNEN--HVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAK 78 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~--~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak 78 (745)
|||||||||||+|...++++ .+.+.+.+.++.+|.||||++++|.++||++++.++|+.+++++++++|.+.||+|||
T Consensus 257 iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak 336 (679)
T cd00124 257 ILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAK 336 (679)
T ss_pred HHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHH
Confidence 68999999999998765544 3788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcc
Q 004543 79 SIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW 158 (745)
Q Consensus 79 ~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w 158 (745)
+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|
T Consensus 337 ~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~ 415 (679)
T cd00124 337 ALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDW 415 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999875 3456799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCC---CCCceEEEeccceeEEeccc
Q 004543 159 AKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTTG 235 (745)
Q Consensus 159 ~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~~~g 235 (745)
+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|..+ .+..|+|+||||+|.|+++|
T Consensus 416 ~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~g 495 (679)
T cd00124 416 ESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARG 495 (679)
T ss_pred cCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCC
Confidence 999999999999999999999999999999999999999999999999999986332 25799999999999999999
Q ss_pred hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543 236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 314 (745)
Q Consensus 236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf 314 (745)
|++||+|.++++++++|++|+++++ .+|.......+..+.. ....+......+||+++|+.||+.||++|++|+|||
T Consensus 496 fleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~--~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hf 573 (679)
T cd00124 496 FLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTG--STSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHF 573 (679)
T ss_pred HHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccc--cccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999999999976 5776533221111000 001111223568999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCC-ChHHHHHHHHHHcCc
Q 004543 315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ-DPLSVSVAILHQFNI 393 (745)
Q Consensus 315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~-d~~~~~~~ll~~~~~ 393 (745)
|||||||+.+.|+.||..+|++||+|+||||+|+|++.|||+|++|.+|+.||++|++...+.. ...+.|..+|..+++
T Consensus 574 IRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~ 653 (679)
T cd00124 574 IRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGL 653 (679)
T ss_pred EEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998876643 223348999999999
Q ss_pred CCcceeeccccccccccccccccccc
Q 004543 394 LPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 394 ~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
++++|++|+||||||.+++..||..|
T Consensus 654 ~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 654 PKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CccCEEecCCeEEECcCHHHHHhccC
Confidence 99999999999999999999998764
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.9e-101 Score=938.12 Aligned_cols=463 Identities=40% Similarity=0.649 Sum_probs=412.2
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|+|||||||||.|....+.+.+.+.+.+.+..+|+||||++.+|..+|+++++++|++.|.+..+.+|+..+..+|||++
T Consensus 345 i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~l 424 (1930)
T KOG0161|consen 345 IVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKAL 424 (1930)
T ss_pred HHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHH
Confidence 58999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|+|||.|||.+||.+|+.. .+...|||||||+|||+|+.||||||||||+||+||||||+|||.+||++|.+|||.|+.
T Consensus 425 YerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~f 503 (1930)
T KOG0161|consen 425 YERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDF 503 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceee
Confidence 9999999999999999976 567789999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-CcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHc-CCCCCccCCC----CCceEEEeccceeEEecc
Q 004543 161 VDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER----DKSFTVSHYAGEVIYDTT 234 (745)
Q Consensus 161 i~~~-dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~~~~~~----~~~F~I~HyaG~V~Y~~~ 234 (745)
|||. |-++|||||++ |.|||++|||||.+|++||.+|++||...+ ++||.|.+++ +.+|.|.||||+|.|++.
T Consensus 504 idfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~ 582 (1930)
T KOG0161|consen 504 IDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVD 582 (1930)
T ss_pred eccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCcc
Confidence 9996 99999999998 679999999999999999999999998876 8999998873 579999999999999999
Q ss_pred chhhhhcccccHHHHHHHhhcCCch-hHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCe
Q 004543 235 GFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPH 313 (745)
Q Consensus 235 gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~h 313 (745)
||++||+||++..++.+|..|++.+ ..+|.+...... ....+.+ ...+..+.+.||+..++.||+.||.+|..|+||
T Consensus 583 ~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~-~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~ph 660 (1930)
T KOG0161|consen 583 GWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA-AAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPH 660 (1930)
T ss_pred chhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch-hhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999999875 578876221110 0000100 012233457899999999999999999999999
Q ss_pred eeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC--CChHHHHHHHHHHc
Q 004543 314 FIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQF 391 (745)
Q Consensus 314 fIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~--~d~~~~~~~ll~~~ 391 (745)
|||||.||..+.||.+|.++|+.||+|.||||.|||+|.|||.|++|.+|..||.++.+...+. .|.+..|+.++..+
T Consensus 661 FvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l 740 (1930)
T KOG0161|consen 661 FVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEEL 740 (1930)
T ss_pred eeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999444444443 47889999999999
Q ss_pred CcCCcceeeccccccccccccccccccccccchhhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 004543 392 NILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQR 471 (745)
Q Consensus 392 ~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~~~~~ 471 (745)
.++...|++|.|||||+.|+++.||..|...+..+ ++.+|+.+|||++|+.|.+...+
T Consensus 741 ~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~i----------------------i~~fQA~~Rg~l~r~~~~kr~~~ 798 (1930)
T KOG0161|consen 741 LLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQI----------------------ITLFQAAIRGYLARKEFKKRLQQ 798 (1930)
T ss_pred hcccceEeecceeeeehHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876654 45667777777777777766666
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 004543 472 HRAAVVIQRQIKSRVARQ 489 (745)
Q Consensus 472 ~~Aa~~IQ~~~R~~~~R~ 489 (745)
..|+.+||..+|.|...+
T Consensus 799 ~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 799 LDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 678888888887775444
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=6.3e-100 Score=890.08 Aligned_cols=416 Identities=27% Similarity=0.408 Sum_probs=359.4
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCce-------------EEecCChh
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT-------------IVQNLTLS 67 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~-------------i~~~l~~~ 67 (745)
|||||||||||+|... .+.+.+.+.+.+..||.||||++++|.++|+++++..+++. +..++++.
T Consensus 259 iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (767)
T cd01386 259 VLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKM 336 (767)
T ss_pred HHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHH
Confidence 6899999999999862 34567888999999999999999999999999888766432 33467889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCc------CchhhhHhhhhhhhHHHHHHH
Q 004543 68 QATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR------NSFEQFCINYANERLQQHFNR 141 (745)
Q Consensus 68 qA~~~rdaLak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~------NsfEQlcINyaNE~Lq~~f~~ 141 (745)
+|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. |||||||||||||+||++|++
T Consensus 337 ~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~ 415 (767)
T cd01386 337 TAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHH 415 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999998753 3457999999999999984 899999999999999999999
Q ss_pred hhhhhhHHHhhhcCCccccccc-CCcHhHHHhhhcCC--------------CcccccchhhcCCCCCCcHHHHHHHHHHc
Q 004543 142 HLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKP--------------LGLLSLLDEESTFPNGTDLTFANKLKQHL 206 (745)
Q Consensus 142 ~~f~~eqeey~~EgI~w~~i~~-~dn~~~ldLie~kp--------------~Gil~lLdee~~~p~~td~~f~~kl~~~~ 206 (745)
+||+.||++|.+|||+|+.+++ .||++|||||+++| .|||++|||||++|++||++|++||++++
T Consensus 416 ~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~ 495 (767)
T cd01386 416 RTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY 495 (767)
T ss_pred HHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHh
Confidence 9999999999999999986655 69999999999865 59999999999999999999999999999
Q ss_pred CCCCCccCC--------CCCceEEEeccce--eEEeccchhhhhcccc-cHHHHHHHhhcCCchh-HHhhhccccc----
Q 004543 207 NSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNRDLL-HLDSIELLSSCSCHLP-QIFASNMLSQ---- 270 (745)
Q Consensus 207 ~~~~~~~~~--------~~~~F~I~HyaG~--V~Y~~~gfleKN~D~l-~~~~~~ll~~S~~~~~-~lf~~~~~~~---- 270 (745)
++|++|... .+..|+|+||||+ |+|+++||++||+|.+ ..+++++|++|+++++ .+|.......
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~ 575 (767)
T cd01386 496 GDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCL 575 (767)
T ss_pred ccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccc
Confidence 988887541 2458999999995 9999999999999965 6899999999998865 6886432110
Q ss_pred -C--------CCCccCC-C-ccC---CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCC-----------
Q 004543 271 -S--------NKPVVGP-L-YKA---GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQS----------- 325 (745)
Q Consensus 271 -~--------~~~~~~~-~-~~~---~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~----------- 325 (745)
+ ..+...+ . ++. +....+++||+++|+.||+.||++|++|+||||||||||+.+.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~ 655 (767)
T cd01386 576 GAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSP 655 (767)
T ss_pred cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccc
Confidence 0 0000000 0 000 0112345799999999999999999999999999999999874
Q ss_pred -----------CCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccC-------CCChHHHHHHH
Q 004543 326 -----------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-------SQDPLSVSVAI 387 (745)
Q Consensus 326 -----------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~-------~~d~~~~~~~l 387 (745)
|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+...+ ..|+++.|..|
T Consensus 656 ~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~i 735 (767)
T cd01386 656 QQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEI 735 (767)
T ss_pred cccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHH
Confidence 789999999999999999999999999999999999999999999886543 24889999999
Q ss_pred HHHcCcCCcceeeccccccccccccccccccc
Q 004543 388 LHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 419 (745)
Q Consensus 388 l~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r 419 (745)
|..+++++++|++|+||||||.+++..||..|
T Consensus 736 l~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 736 LENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 99999999999999999999999999999875
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4.1e-98 Score=884.82 Aligned_cols=408 Identities=47% Similarity=0.804 Sum_probs=352.5
Q ss_pred ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 80 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L 80 (745)
|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++++++++||.++||+|||+|
T Consensus 260 iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~L 339 (689)
T PF00063_consen 260 ILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKAL 339 (689)
T ss_dssp HHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhh
Confidence 58999999999999988777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543 81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 160 (745)
Q Consensus 81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~ 160 (745)
|++||+|||++||.+|++.......+||||||||||+|..|||||||||||||+||++|++++|+.||++|.+|||+|+.
T Consensus 340 Y~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~ 419 (689)
T PF00063_consen 340 YSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPF 419 (689)
T ss_dssp HHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSC
T ss_pred hhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccc
Confidence 99999999999999999866456789999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHc-CCCCCccCC------CCCceEEEeccceeEEe
Q 004543 161 VDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGE------RDKSFTVSHYAGEVIYD 232 (745)
Q Consensus 161 i~~-~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~~~~~------~~~~F~I~HyaG~V~Y~ 232 (745)
++| .||++|+|||+++|.|||++|||||.+|+++|++|+++|...+ ++|++|.++ .+..|+|+||||+|.|+
T Consensus 420 i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~ 499 (689)
T PF00063_consen 420 IDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYD 499 (689)
T ss_dssp S-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE
T ss_pred cccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceec
Confidence 999 9999999999999999999999999999999999999999999 888988654 36799999999999999
Q ss_pred ccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCC--------CccCCCccCCCCCCCCccHHHHHHHHHHHH
Q 004543 233 TTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNK--------PVVGPLYKAGGADSQKLSVATKFKGQLFQL 303 (745)
Q Consensus 233 ~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~--------~~~~~~~~~~~~~~~~~tv~~~f~~~L~~L 303 (745)
+.||++||+|.++++++++|++|+++++ .+|+......... ...+......+......||+++|+.||+.|
T Consensus 500 v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L 579 (689)
T PF00063_consen 500 VEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDEL 579 (689)
T ss_dssp -TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccccccccccccccccccHHHH
Confidence 9999999999999999999999999865 6786554210000 000001112222345689999999999999
Q ss_pred HHHHhccCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccC-----CC
Q 004543 304 MQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-----SQ 378 (745)
Q Consensus 304 m~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~-----~~ 378 (745)
|+.|++|.||||||||||+.+.|+.||..+|++||+|+||+|+++|++.|||+|++|.+|++||++|++...+ ..
T Consensus 580 ~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~ 659 (689)
T PF00063_consen 580 MDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKE 659 (689)
T ss_dssp HHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCS
T ss_pred HhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 35
Q ss_pred ChHHHHHHHHHHcCcCCcceeecccccccc
Q 004543 379 DPLSVSVAILHQFNILPEMYQVGYTKLFFR 408 (745)
Q Consensus 379 d~~~~~~~ll~~~~~~~~~y~vG~tkVFlr 408 (745)
++++.|+.||+.+++++++|++|+||||||
T Consensus 660 ~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 660 DDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp SHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred CHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 899999999999999999999999999996
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.2e-94 Score=782.50 Aligned_cols=455 Identities=35% Similarity=0.581 Sum_probs=391.0
Q ss_pred ChhHHHhhcCcEEEEeCC--CCceee--CChHHHHHHHHHcCCCHHHHHHhhccceeee-----cCceEEecCChhhhHH
Q 004543 1 MLAAVLWLGNVSFTVIDN--ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMRV-----GNDTIVQNLTLSQATD 71 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~~--~~~~~~--~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~-----~~e~i~~~l~~~qA~~ 71 (745)
++|||||||||+|++..+ .+.|.+ .+..+|..+|.|||++.++|...||.|.|.. .|..|.+||.+.+|..
T Consensus 340 ~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n 419 (1259)
T KOG0163|consen 340 TVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASN 419 (1259)
T ss_pred HHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcc
Confidence 479999999999987542 345555 4567899999999999999999999999863 4678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHh
Q 004543 72 TRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 151 (745)
Q Consensus 72 ~rdaLak~LY~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey 151 (745)
+||||||++|++||||||.+||+++.... +..+||||||.|||.|.+|||||||||||||+||+|||+.|++.|||.|
T Consensus 420 ~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElY 497 (1259)
T KOG0163|consen 420 ARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELY 497 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997643 4679999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCCC------------CCc
Q 004543 152 IQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKS 219 (745)
Q Consensus 152 ~~EgI~w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~------------~~~ 219 (745)
..||+..+.|.|.||++||+|||.|..|||.|||||..+|++++..|....++.+++|-....|| +..
T Consensus 498 ekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG 577 (1259)
T KOG0163|consen 498 EKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEG 577 (1259)
T ss_pred HhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999998877664433221 468
Q ss_pred eEEEeccceeEEeccchhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 004543 220 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 298 (745)
Q Consensus 220 F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~ 298 (745)
|.|+||||.|.|++.-|+|||.|.|+..+..|+..|+++++ .||.+...+ +.++..| ....-||+++|++
T Consensus 578 ~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t-~a~~~~g--------kL~~iSVGaKFKt 648 (1259)
T KOG0163|consen 578 FLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSST-SAKQTRG--------KLKFISVGAKFKT 648 (1259)
T ss_pred eeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCC-ccccccc--------eeeEEehhHHHHH
Confidence 99999999999999999999999999999999999999965 688653211 1111111 2235799999999
Q ss_pred HHHHHHHHHhccCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCC
Q 004543 299 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 378 (745)
Q Consensus 299 ~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~ 378 (745)
||..||+.|++|..|||||||||..+.|.+||...++.||+|+||+.++++++.|||.|.+|.+.+.=|+-.+|+.....
T Consensus 649 QL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLarL 728 (1259)
T KOG0163|consen 649 QLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLARL 728 (1259)
T ss_pred HHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ChHHHHHHHHHHcCcCCcceeeccccccccccccccccccccccchhhhhhhhhhhccccchhhhhh-------------
Q 004543 379 DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKEL------------- 445 (745)
Q Consensus 379 d~~~~~~~ll~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~aa~~IQ~~~Rg~~~R~~~~~~------------- 445 (745)
||+-.|+++.+.+|++..+|++|.|||||+.|..+..+.+...-......|-+-+--|+.+.++++.
T Consensus 729 dpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a~sVIKLkNk 808 (1259)
T KOG0163|consen 729 DPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWKKSQYGALSVIKLKNK 808 (1259)
T ss_pred ChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhheeehhhH
Confidence 9999999999999999999999999999999998877765443333222222222233444433322
Q ss_pred ----hhhhhhHHHHHHHHHHHHHHH
Q 004543 446 ----RRGIVALQSFIRGEKIRKEYA 466 (745)
Q Consensus 446 ----r~a~i~iQs~~Rg~~aRr~~~ 466 (745)
-.+++++|+++|||++|+++.
T Consensus 809 I~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 809 IIYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 135677788888888887764
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=3e-59 Score=549.82 Aligned_cols=509 Identities=31% Similarity=0.401 Sum_probs=411.3
Q ss_pred ChhHHHhhcCcEEEEeC--CCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHH
Q 004543 1 MLAAVLWLGNVSFTVID--NENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAK 78 (745)
Q Consensus 1 ilaaILhLGNi~F~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak 78 (745)
++|||||+|||+|.... ..+.+.+.+.+.+..+|.||+++...|.++||.++....||.+..++++++|.+.||++||
T Consensus 320 ~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak 399 (1062)
T KOG4229|consen 320 SLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAK 399 (1062)
T ss_pred hcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHH
Confidence 58999999999996432 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCC-ccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCc
Q 004543 79 SIYACLFEWLVEQINKSLAVGKRR-TGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 157 (745)
Q Consensus 79 ~LY~~LF~wlV~~iN~~L~~~~~~-~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~ 157 (745)
.||++||.|||.+||..+.+.... ...+||||||||||+|..|||||+|||||||+||.+|++|||..||+||..|+|+
T Consensus 400 ~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~ 479 (1062)
T KOG4229|consen 400 TLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESID 479 (1062)
T ss_pred HHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCC
Confidence 999999999999999999864321 3579999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcHhHHHhhhcCCCcccccchhhcCCCCCCcHHHHHHHHHHcCCCCCccCC---CCCceEEEeccceeEEecc
Q 004543 158 WAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTT 234 (745)
Q Consensus 158 w~~i~~~dn~~~ldLie~kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~~~ 234 (745)
|.+|.|.||..|+|||..+|.||+.+||||+.+|+++|.+++.|++..++.+..+..+ -...|+|.||||.|.|++.
T Consensus 480 w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~ 559 (1062)
T KOG4229|consen 480 WRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIR 559 (1062)
T ss_pred eeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhh
Confidence 9999999999999999999999999999999999999999999999999876655433 2579999999999999999
Q ss_pred chhhhhcccccHHHHHHHhhcCCchhHHhhhcc-----------------------------c----cc-----------
Q 004543 235 GFLEKNRDLLHLDSIELLSSCSCHLPQIFASNM-----------------------------L----SQ----------- 270 (745)
Q Consensus 235 gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~-----------------------------~----~~----------- 270 (745)
||++||+|.++.|++.++.+|.+.+...+-+.. . ..
T Consensus 560 ~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 639 (1062)
T KOG4229|consen 560 GFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNC 639 (1062)
T ss_pred hHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHh
Confidence 999999999999999999998755432210000 0 00
Q ss_pred -----C--CCC---------ccC-------------------------C------------CccCCCC------------
Q 004543 271 -----S--NKP---------VVG-------------------------P------------LYKAGGA------------ 285 (745)
Q Consensus 271 -----~--~~~---------~~~-------------------------~------------~~~~~~~------------ 285 (745)
+ ..| .+| | .....+.
T Consensus 640 ~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1062)
T KOG4229|consen 640 LPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNG 719 (1062)
T ss_pred hhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcc
Confidence 0 000 000 0 0000000
Q ss_pred -C------C------------------------------------------CCccHHHHH----------------HHHH
Q 004543 286 -D------S------------------------------------------QKLSVATKF----------------KGQL 300 (745)
Q Consensus 286 -~------~------------------------------------------~~~tv~~~f----------------~~~L 300 (745)
. + ....++..+ ....
T Consensus 720 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~ 799 (1062)
T KOG4229|consen 720 RKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRK 799 (1062)
T ss_pred cccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhh
Confidence 0 0 000111111 1233
Q ss_pred HHHHHHHhccCCeeeeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCCCCh
Q 004543 301 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 380 (745)
Q Consensus 301 ~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~~d~ 380 (745)
..++..+....|.|++|++-|..+....|+...|..|+.+.|+++.+++...+|+..+++.+|..-+.+..+....
T Consensus 800 ~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~---- 875 (1062)
T KOG4229|consen 800 SKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD---- 875 (1062)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccch----
Confidence 3466677777899999999998888899999999999999999999999999999999999999999988873321
Q ss_pred HHHHHHHHHHcCcCCcceeeccccccccccccccccccc-cccch-hhhhhhhhhhccccchhhhhhhhhhhhHHHHHHH
Q 004543 381 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR-NRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRG 458 (745)
Q Consensus 381 ~~~~~~ll~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r-~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg 458 (745)
.........+....+.++.|..++|+...-....+..- ..... -+...|++++....++.+..+..+.+++| |++
T Consensus 876 -~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 952 (1062)
T KOG4229|consen 876 -TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLE 952 (1062)
T ss_pred -hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHH
Confidence 11112233334467899999999999876644443322 22222 25678999999999999999999999999 888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 004543 459 EKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 516 (745)
Q Consensus 459 ~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~ 516 (745)
++.|+..........+++.+|..|+.+..+..+...+++.+.+|+.+++...++.+..
T Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1010 (1062)
T KOG4229|consen 953 LLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFAA 1010 (1062)
T ss_pred HhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHHH
Confidence 8888744322234568999999999999999999999999999999998877666544
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.12 E-value=0.00092 Score=85.68 Aligned_cols=283 Identities=14% Similarity=0.096 Sum_probs=146.4
Q ss_pred HHHHHHHHcCCCHHHHHHhhcc--ceeeecCceEEecCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccce
Q 004543 29 GLITVAKLIGCDIGELKLALST--RKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 106 (745)
Q Consensus 29 ~l~~~a~LLgv~~~~L~~~Lt~--~~~~~~~e~i~~~l~~~qA~~~rdaLak~LY~~LF~wlV~~iN~~L~~~~~~~~~~ 106 (745)
.+..+-..||+++++...++.. -.+.+|+-.+...-..+||.-.....|-.+-. |+..=+.-...++..+ ....
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p---riKv 399 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP---RIKV 399 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc---ceec
Confidence 4667778999999998887532 22345554444433555554433333322211 1112222222222221 1124
Q ss_pred eeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccccccCCcHhHHHhhhcCCCcccccchh
Q 004543 107 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDE 186 (745)
Q Consensus 107 IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~i~~~dn~~~ldLie~kp~Gil~lLde 186 (745)
.+-.++.|+.. +| .++|=+-|....++.+|.. ...+...+++|+ .+-..+|.+++-...-||..
T Consensus 400 g~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--- 463 (1930)
T KOG0161|consen 400 GREWVSKAQNV------EQ--VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--- 463 (1930)
T ss_pred cchhhhhcchH------HH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc---
Confidence 44455566543 33 7788888888888888855 677888888887 34455666666543333322
Q ss_pred hcCCCCCCcHH----H-HHHHHHHcCCCCCccCC------CCCceEEEeccceeEEeccchhhhhcccccHHHHHHH---
Q 004543 187 ESTFPNGTDLT----F-ANKLKQHLNSNPCFRGE------RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELL--- 252 (745)
Q Consensus 187 e~~~p~~td~~----f-~~kl~~~~~~~~~~~~~------~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll--- 252 (745)
.+=+- | .+||++.++.|. |... -+-.+..-|| |-=.=.+.+-|+|=. .++.+|
T Consensus 464 ------nSFEQLciNytnEkLQqfFnh~m-FvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdEE 530 (1930)
T KOG0161|consen 464 ------NSFEQLCINYTNEKLQQFFNHHM-FVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDEE 530 (1930)
T ss_pred ------CCHHHHHHHHHHHHHHhhhcchh-hhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHHH
Confidence 11111 1 246666665443 3322 1457888887 221122333344411 222222
Q ss_pred ---hhcC-Cchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCC
Q 004543 253 ---SSCS-CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPG 327 (745)
Q Consensus 253 ---~~S~-~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~ 327 (745)
-+++ ..++ .++....+.. | .-+++. ..+....+....-+.+ |+|.-++-..++.
T Consensus 531 c~~PkAtd~tf~~kL~~~~~gk~---~-----------~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knk 589 (1930)
T KOG0161|consen 531 CVVPKATDKTFLEKLCDQHLGKH---P-----------KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNK 589 (1930)
T ss_pred HhcCCCccchHHHHHHHHhhccC---c-----------cccCcc-----cccchhhhheeeecce--eccCccchhhcCC
Confidence 2222 1222 2332221110 0 001111 1111122222222333 9999999999998
Q ss_pred CcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhcc
Q 004543 328 LYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 369 (745)
Q Consensus 328 ~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~ 369 (745)
.-....|+.+|+|++ .+.|.....| +..+..+..++..
T Consensus 590 dpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 590 DPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA 627 (1930)
T ss_pred CCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh
Confidence 889999999999999 7777665444 6666666666654
No 24
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.04 E-value=0.00012 Score=86.92 Aligned_cols=73 Identities=27% Similarity=0.309 Sum_probs=63.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhH
Q 004543 445 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK 521 (745)
Q Consensus 445 ~r~a~i~iQs~~Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~l~~~~ 521 (745)
+..+++.||+.+|||+.|+.|..++ .+++.||+++||+++|+... ...|++.||..||++..|+.|..++...
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r---~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~ 744 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLR---SAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPAS 744 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999997766 69999999999999998444 6679999999999999999999876543
No 25
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.90 E-value=1.1e-05 Score=95.54 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=76.3
Q ss_pred hhhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHh-------h-----------------------HHH
Q 004543 424 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL-------Q-----------------------RHR 473 (745)
Q Consensus 424 ~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~~~-------~-----------------------~~~ 473 (745)
.++..||..+|||+.|+.|+.++.-++.||+.+||+..|+.|..+. + ...
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 3677999999999999999999999999999999999999985421 1 223
Q ss_pred HHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 004543 474 AAVVIQRQIKSRVAR--QKLKNIKYSSIMIQSVIRGWLVRRCSGDIC 518 (745)
Q Consensus 474 Aa~~IQ~~~R~~~~R--~~~~~~~~a~i~IQs~~R~~~aRr~~~~l~ 518 (745)
||+.||...|-|+.- ..|.++-+|++.||+.+|.+.++.+|+++.
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 566666666666655 556667779999999999999998888764
No 26
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.38 E-value=0.0084 Score=74.01 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=86.4
Q ss_pred chhhhhhhhhhhccccchhhhhhhhhhhhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004543 423 LHGILRVQSCFRGHQARLCLKELRRGIVALQ-SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMI 501 (745)
Q Consensus 423 l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQ-s~~Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~I 501 (745)
.++++.+|..|+....|++|......++.+| ..+|....+....... .+.|++.+|+.||.+..+++|..+.+.++.+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~-~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~ 871 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF-SLKAEVLIQKFGRSLKAKKRFSLLKKETIYL 871 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH
Confidence 4578899999999999999999999999999 7777777666543333 5679999999999999999999999999999
Q ss_pred HHHHhhHHHHHHhhhhhhhHh
Q 004543 502 QSVIRGWLVRRCSGDICLLKS 522 (745)
Q Consensus 502 Qs~~R~~~aRr~~~~l~~~~r 522 (745)
|+.+|.-.|++++..++...+
T Consensus 872 ~~~~r~~~a~r~~~e~k~~~~ 892 (1463)
T COG5022 872 QSAQRVELAERQLQELKIDVK 892 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999876655
No 27
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.32 E-value=0.00027 Score=44.34 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 004543 473 RAAVVIQRQIKSRVARQKL 491 (745)
Q Consensus 473 ~Aa~~IQ~~~R~~~~R~~~ 491 (745)
.||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3555555555555555544
No 28
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.07 E-value=0.0075 Score=73.98 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=70.8
Q ss_pred hhhhhhhhccccchhhhhhh-------hhhhhHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHH-
Q 004543 427 LRVQSCFRGHQARLCLKELR-------RGIVALQSFIRGEKI---RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK- 495 (745)
Q Consensus 427 ~~IQ~~~Rg~~~R~~~~~~r-------~a~i~iQs~~Rg~~a---Rr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~- 495 (745)
.++|+..||+..|..+.... -.+.-||+.|||++. +..|. .....-++.+|+..||+.+|+.|....
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~--~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL--DSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45699999999988765432 367889999999995 11121 123457899999999999999887654
Q ss_pred ------HHHHHHHHHHhhHHHHHHhhhhh
Q 004543 496 ------YSSIMIQSVIRGWLVRRCSGDIC 518 (745)
Q Consensus 496 ------~a~i~IQs~~R~~~aRr~~~~l~ 518 (745)
.++++||+.+|+...|..|+.|.
T Consensus 617 ~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 617 YFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 38999999999999999999874
No 29
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.95 E-value=0.001 Score=41.77 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhh
Q 004543 495 KYSSIMIQSVIRGWLVRRCSG 515 (745)
Q Consensus 495 ~~a~i~IQs~~R~~~aRr~~~ 515 (745)
+++++.||+.|||+++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999874
No 30
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.53 E-value=0.0054 Score=70.11 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 004543 447 RGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 516 (745)
Q Consensus 447 ~a~i~iQs~~Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~ 516 (745)
.-++.||..|||+++|.+|.+++ .++++|+ +||.+. .+..+..||..+||+..++.|.+
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K-------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYK-------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHH-------HHHHHHHHHHHHHhhhhccccCC
Confidence 45788899999999999998776 4666666 887443 34566778999999999888875
No 31
>PTZ00014 myosin-A; Provisional
Probab=96.03 E-value=0.016 Score=70.15 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 004543 472 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCS 514 (745)
Q Consensus 472 ~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~ 514 (745)
...++.||++||||++|+.|...+.++++||+.||+|++++..
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999999999999999999999998753
No 32
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.97 E-value=0.0077 Score=39.87 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 004543 473 RAAVVIQRQIKSRVARQKL 491 (745)
Q Consensus 473 ~Aa~~IQ~~~R~~~~R~~~ 491 (745)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666666666666666665
No 33
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.88 E-value=0.0074 Score=39.95 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 004543 445 LRRGIVALQSFIRGEKIRKEY 465 (745)
Q Consensus 445 ~r~a~i~iQs~~Rg~~aRr~~ 465 (745)
+..+++.||++|||+++|+.|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346788888888999888887
No 34
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.99 E-value=0.13 Score=63.56 Aligned_cols=72 Identities=26% Similarity=0.357 Sum_probs=58.8
Q ss_pred hhhhhhhhhhcccc----chhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004543 425 GILRVQSCFRGHQA----RLCLKELRRGIVALQSFIRGEKIRKEYALVLQ----RHRAAVVIQRQIKSRVARQKLKNIKY 496 (745)
Q Consensus 425 aa~~IQ~~~Rg~~~----R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~~~~----~~~Aa~~IQ~~~R~~~~R~~~~~~~~ 496 (745)
...-||+.|||++. ..+......-++.+|++.||+++|+.|....+ ...+++.||++.|++.+|..|..+..
T Consensus 567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 56789999999984 22334567789999999999999999865433 55689999999999999999998754
No 35
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=94.63 E-value=0.033 Score=68.41 Aligned_cols=173 Identities=16% Similarity=0.077 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchH-HHHHHHhhcCccceeeeeecCCCCccchhhHHHhhc
Q 004543 290 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQG-LVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYG 368 (745)
Q Consensus 290 ~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~ 368 (745)
.+++.+++-++......|....+||.|||+||..-.+..++.. .+..++..-|...+....+.|+..++.|.+++.+++
T Consensus 642 ~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1062)
T KOG4229|consen 642 DKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRK 721 (1062)
T ss_pred ccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccc
Confidence 3556666668888888899999999999999999999999877 899999999999999999999999999999988776
Q ss_pred cccccccCCCCh-HHHHHHHHHHcCcCCcceeeccccccccccccccccccccccchhhhhhhhhhhccccchhhhhhh-
Q 004543 369 FLLLESVASQDP-LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELR- 446 (745)
Q Consensus 369 ~L~~~~~~~~d~-~~~~~~ll~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~aa~~IQ~~~Rg~~~R~~~~~~r- 446 (745)
...-...+..+. ...|..++... .-+++..+.+.++.+..--..+.-.+...+-..+..|..++.|..+..+...+
T Consensus 722 ~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~ 799 (1062)
T KOG4229|consen 722 NSEYLCSPRPDLAERARVQLLEKN--AINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRK 799 (1062)
T ss_pred cccccCCCCHHHHHHHHHHHHhhc--cccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhh
Confidence 443221111122 12333444433 33678888898888865544444333333334456666666666666543332
Q ss_pred ---hhhhhHHHHHHHHHHHHH
Q 004543 447 ---RGIVALQSFIRGEKIRKE 464 (745)
Q Consensus 447 ---~a~i~iQs~~Rg~~aRr~ 464 (745)
...+.+|.-+.+...+..
T Consensus 800 ~k~~~~~~~~~~~~~~~~~~~ 820 (1062)
T KOG4229|consen 800 SKLESYLAIAKELFVRRFLEN 820 (1062)
T ss_pred ccchhhhhhhhHHHHHHHHHh
Confidence 234445554444443333
No 36
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.64 E-value=2.7 Score=49.26 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004543 470 QRHRAAVVIQRQIKSRVARQKLKNIKY 496 (745)
Q Consensus 470 ~~~~Aa~~IQ~~~R~~~~R~~~~~~~~ 496 (745)
.+..+.+.+|+..|||++|++++....
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 356688899999999999998876544
No 37
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=93.51 E-value=0.16 Score=61.22 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004543 424 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 503 (745)
Q Consensus 424 ~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs 503 (745)
.++..+|+.+|||+.|..+.+.-.+++.||...|-|+.-++... .+..+|++.||+.+|.+.+|..|++ ..++++-
T Consensus 867 lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~-~r~~~A~~~VQsm~rs~~a~qqyrR---~~~~~~~ 942 (975)
T KOG0520|consen 867 LRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTE-ERLTRAVVRVQSMFRSPKAQQQYRR---LLLVYEQ 942 (975)
T ss_pred HHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHH---HHHHHHH
Confidence 34566777777777777777776778888888887765532211 2355899999999999999965554 4566666
Q ss_pred HHhhH
Q 004543 504 VIRGW 508 (745)
Q Consensus 504 ~~R~~ 508 (745)
+.+.+
T Consensus 943 ~~~~~ 947 (975)
T KOG0520|consen 943 YQESY 947 (975)
T ss_pred HHhhh
Confidence 55544
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.02 E-value=11 Score=45.35 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=53.1
Q ss_pred hHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 520 LKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALR----EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 595 (745)
Q Consensus 520 ~~r~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~----~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~ 595 (745)
+.|+++.+......+.+..++.+++-|+..+|+++. .-...++..++.+++.+..+...|.....-.+.|+..+.+
T Consensus 958 e~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~ 1037 (1243)
T KOG0971|consen 958 EDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQ 1037 (1243)
T ss_pred HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555677788888888888888877 3334455566666665555544444444444556666666
Q ss_pred HHHHHHHHHHhc
Q 004543 596 LQSSLSIAKKSL 607 (745)
Q Consensus 596 Lq~~L~~a~~sl 607 (745)
|+.+.+..+..+
T Consensus 1038 lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1038 LESEKAELKQRL 1049 (1243)
T ss_pred HHhhHHHHHHHh
Confidence 666665555544
No 39
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.23 E-value=41 Score=36.17 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCccccc
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQKMKS----MEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEY 628 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~----~ee~l~~q~~~Lq~~L~~a~~sla~~~~~~~~~~s~~~~~~~~~ 628 (745)
.+..++.+....+..++.+..+.-++|..+.. +...|.++|..|..+-...+..|... -+++ ++|.|....
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~----~s~~-~s~~d~~~~ 217 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP----VSAP-PSPRDTVNV 217 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cCCC-CCcchHHhh
Confidence 33344444344444445555555555444433 44447777877766555554444331 1111 111111100
Q ss_pred cccCCCCCCCCCCCCCccCCCccchhhhHHHHHHhhhc
Q 004543 629 SWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQ 666 (745)
Q Consensus 629 ~~~~~~~~~~~~~~~~~e~~~~~~~v~~l~~e~~~~~q 666 (745)
+. ....+....+.|..|..|+.+-++
T Consensus 218 ----------~~--~~Dt~e~~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 218 ----------SE--ENDTAERLSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred ----------cc--cCCchhHHHHHHHHHHHHHHHHHH
Confidence 00 111223457778899999887666
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.66 E-value=6.6 Score=43.66 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
..+..+..+.+++.++.+.++++...++++..|.+.+......+++++++.+.......+++.+|++++
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777888888888888888888888888887777778877777766666666666666665
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.50 E-value=16 Score=33.78 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
.....++..++..+.+++.+...+-+-+.+-.++..|++.-+..+.++.+.|+..|
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666666666667777777777777777777666543
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.16 E-value=21 Score=29.89 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 539 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 539 ~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
.+.+|+.++..+-..+..++.|+..|+++...+.....++......+.++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777776666666666665555554444
No 43
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=84.51 E-value=14 Score=38.76 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccc
Q 004543 551 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM---RSLQSSLSIAKKSLAID 610 (745)
Q Consensus 551 e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~---~~Lq~~L~~a~~sla~~ 610 (745)
+-++++...|++.|++=++-....+.+...-+.++-.+..-|. ++|-.+|+.|......+
T Consensus 116 QLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rd 178 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRD 178 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccccc
Confidence 3344455555555555555555444444444444444444343 33434445566555443
No 44
>PRK11637 AmiB activator; Provisional
Probab=84.27 E-value=10 Score=43.02 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 550 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 550 ~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
++.++..++.++..++.++...+.++..++.++..+++.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334443444433333333
No 45
>PRK09039 hypothetical protein; Validated
Probab=84.12 E-value=45 Score=36.75 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=19.7
Q ss_pred CccchhhhHHHHHHhhhcccccccceeEee
Q 004543 649 AGLSVISRLAEEFDQRSQVFGDDAKFLVEV 678 (745)
Q Consensus 649 ~~~~~v~~l~~e~~~~~q~~~~~~~~~~e~ 678 (745)
.+...+..++..+.....-.+++....|.|
T Consensus 238 ~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I 267 (343)
T PRK09039 238 EGQAEIAKLAAALIELAKEIPPEINWVLRV 267 (343)
T ss_pred HHHHHHHHHHHHHHHhhhccCCcCCeeEEE
Confidence 455667888888877654456666655555
No 46
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.71 E-value=13 Score=30.43 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
..|..++..+-.....+..||..|++++.....+...+.+++..-...+...++.|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777788888888888888888877777777776655555544444333
No 47
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=83.48 E-value=9.6 Score=43.18 Aligned_cols=57 Identities=4% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004543 548 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLA 608 (745)
Q Consensus 548 ~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~sla 608 (745)
.+.+.+..++|++++.++.+++.+.....+++++++.++++. ..|+.++++++....
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~----~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN----AALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHhhhcCCC
Confidence 344445555556666666555555556666666666555554 444455544444433
No 48
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.83 E-value=13 Score=39.00 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
..+.++..|...+.+...++.++++++..++.++..++.++.++++.+....+.+.+++..++.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666666666666666666666666666666555554444
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.25 E-value=26 Score=33.49 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004543 589 WQKQMRSLQSSLSIAKKS 606 (745)
Q Consensus 589 l~~q~~~Lq~~L~~a~~s 606 (745)
+.+.+..|+.+|+.+...
T Consensus 78 l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 444445555555544333
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.71 E-value=34 Score=34.68 Aligned_cols=10 Identities=10% Similarity=0.414 Sum_probs=4.9
Q ss_pred cceeeccccc
Q 004543 396 EMYQVGYTKL 405 (745)
Q Consensus 396 ~~y~vG~tkV 405 (745)
..|-+..|.|
T Consensus 33 ~eYnITisSI 42 (290)
T COG4026 33 SEYNITISSI 42 (290)
T ss_pred ccceeEEEee
Confidence 4555544443
No 51
>PRK11637 AmiB activator; Provisional
Probab=78.36 E-value=24 Score=40.09 Aligned_cols=51 Identities=12% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
.++.+++....+++.++..++.++..+..++...+.++.+.+.++..++.+
T Consensus 61 ~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 61 KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.56 E-value=23 Score=36.09 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
....+++..+.+.+..+.+++++|+.|+++++.+..+...++.++..+.+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777888888888888887777777776665555544
No 53
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.86 E-value=79 Score=38.61 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004543 457 RGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYS 497 (745)
Q Consensus 457 Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a 497 (745)
|....|++-.+.+++.++|+++|++|||+++|+..+..-++
T Consensus 14 r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 14 RAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666778999999999999998887665443
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.11 E-value=75 Score=36.99 Aligned_cols=77 Identities=25% Similarity=0.317 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccc
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAI 609 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~---l~~q~~~Lq~~L~~a~~sla~ 609 (745)
+..+..++.++..++.++++.+...+++.......+...+.+..-+..+.+.++++ ++++...|..+|..+++.+..
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666666666666666666655 566677777777777766654
No 55
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.07 E-value=62 Score=28.99 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 004543 591 KQMRSLQSSLS 601 (745)
Q Consensus 591 ~q~~~Lq~~L~ 601 (745)
+.++.||.++.
T Consensus 61 kRV~~LQ~El~ 71 (102)
T PF10205_consen 61 KRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHH
Confidence 33345555554
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.56 E-value=36 Score=32.48 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
....+...+++.+..++.++..+..++..+..+...++..+..+++.+
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544444444444444433
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.44 E-value=35 Score=34.70 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=6.5
Q ss_pred eeecccccccccc
Q 004543 398 YQVGYTKLFFRAG 410 (745)
Q Consensus 398 y~vG~tkVFlr~g 410 (745)
|---...|+++.|
T Consensus 27 YIsD~l~v~lRsG 39 (206)
T PRK10884 27 YVSDELNTYVRSG 39 (206)
T ss_pred EEEcceeEEEEcC
Confidence 4444455555554
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.22 E-value=1.2e+02 Score=31.53 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhH
Q 004543 492 KNIKYSSIMIQSVIRGW 508 (745)
Q Consensus 492 ~~~~~a~i~IQs~~R~~ 508 (745)
..+...+..+++-++..
T Consensus 55 e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 55 EDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555555443
No 59
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.17 E-value=48 Score=26.85 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 557 KEEENDILHQRLQQYESRWSEYEQKMKSMEE 587 (745)
Q Consensus 557 le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee 587 (745)
....+..+..+|++.+.+..+++.++..++.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 60
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.45 E-value=57 Score=34.36 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~ 602 (745)
+.........++..+..+...+.+...+...+++++.+.+.++..++.++..+++.+.++.+.|.+.+.+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555556666666666666666666666666666665555555554443
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.86 E-value=53 Score=35.73 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 578 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~ 578 (745)
...++..++....++.+++.+++.+.+.+.+++..++.+..++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555544444444
No 62
>PRK09039 hypothetical protein; Validated
Probab=70.90 E-value=47 Score=36.56 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 595 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~ 595 (745)
+........+....+..+.+++..++..++.++..|...+++..+.+.++..+...++..+..
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555555555555555555556566666666666665555433
No 63
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=8.1 Score=45.53 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 004543 473 RAAVVIQRQIKSRVARQKL 491 (745)
Q Consensus 473 ~Aa~~IQ~~~R~~~~R~~~ 491 (745)
.||+.||++||+|++|++|
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444
No 64
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=70.57 E-value=1.8e+02 Score=33.06 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHH
Q 004543 451 ALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 491 (745)
Q Consensus 451 ~iQs~~Rg~~aRr~~~~~~~~~~Aa~~IQ~~~R~~~~R~~~ 491 (745)
+-+.++.-+.+=.++.+.. .+.||-++|..|.-|+..+.+
T Consensus 344 ~aEKhVhNFMmDtqLTk~~-KnAAA~VLqeTW~i~K~trl~ 383 (489)
T KOG3684|consen 344 KAEKHVHNFMMDTQLTKEH-KNAAANVLQETWLIYKHTKLV 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 3455555555555554433 567999999999988877655
No 65
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.01 E-value=65 Score=27.02 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 585 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ 585 (745)
..|+.++.++..+...+.+++..|+++.+++..+......++.++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555544444444444444433
No 66
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.50 E-value=69 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYES 573 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~ 573 (745)
+.+|+.++..+-..+.-++-|+..|+++...+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333333
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.24 E-value=55 Score=34.02 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 004543 540 LAELQRRVLKA 550 (745)
Q Consensus 540 ~~~Lq~r~~~~ 550 (745)
+..++++...+
T Consensus 98 ~~~ak~r~~~l 108 (239)
T COG1579 98 IQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 68
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.39 E-value=75 Score=32.33 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.6
Q ss_pred hhhhhhc
Q 004543 429 VQSCFRG 435 (745)
Q Consensus 429 IQ~~~Rg 435 (745)
+|...||
T Consensus 78 f~eeLrg 84 (290)
T COG4026 78 FFEELRG 84 (290)
T ss_pred HHHHHHH
Confidence 3333333
No 69
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.32 E-value=1.7e+02 Score=31.63 Aligned_cols=47 Identities=21% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e 579 (745)
+....++...++-.+..+..+..++++|.+.|-+++.+..+...++-
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777888888888888888777776655554443
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.27 E-value=86 Score=32.79 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.|+.....++..+...+++.+.|+++++..+.-..++.--|..|.+.+
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444344433343444333
No 71
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=65 Score=39.31 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhh
Q 004543 484 SRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICL 519 (745)
Q Consensus 484 ~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~l~~ 519 (745)
....|..-++..+++++||+.|||+++|+..+.+-.
T Consensus 18 er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 18 ERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777899999999999999999887643
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.63 E-value=1.3e+02 Score=30.87 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=6.4
Q ss_pred HHHHHHHHcCcCC
Q 004543 383 VSVAILHQFNILP 395 (745)
Q Consensus 383 ~~~~ll~~~~~~~ 395 (745)
+|..++-.+.+||
T Consensus 13 ial~~iL~Lpip~ 25 (216)
T KOG1962|consen 13 IALFLILLLPIPP 25 (216)
T ss_pred HHHHHHHHcCCCH
Confidence 4444444555543
No 73
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.31 E-value=48 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 559 EENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 559 ~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
+|+...+...-.++.++.+.+.+.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn 41 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.29 E-value=74 Score=26.26 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQK 581 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k 581 (745)
++.++.+++..|..+.+......+.++.+
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.56 E-value=98 Score=30.68 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKE 558 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le 558 (745)
.+.++.+++.+..+.+..+..++
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.54 E-value=78 Score=35.60 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCC
Q 004543 539 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDA 618 (745)
Q Consensus 539 ~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~sla~~~~~~~~~~ 618 (745)
...+|++.+.+.+.++..++.++......+...++.+.+.+..+..++....++...|-..|+++..+-. |
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~------~--- 130 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGR------N--- 130 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------C---
Confidence 3444444444555555555555555555555555555555555555555555555555555555433211 1
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCccCCCccchhhhHHHHHHhhhcccccccceeEeecC
Q 004543 619 SVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKS 680 (745)
Q Consensus 619 s~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~v~~l~~e~~~~~q~~~~~~~~~~e~~~ 680 (745)
+||. ..++. .+.....+..-.+.++..|..++.-.+.-+...|..|+.
T Consensus 131 -p~~~----ll~~~---------eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 131 -PPPA----LLVSP---------EDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred -CCch----hhcCh---------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0110 00111 111222355566777778887777777777777777764
No 77
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.33 E-value=90 Score=31.61 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 564 LHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 564 l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
+++++..++-+...++.+...++.+
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444333
No 78
>PF15294 Leu_zip: Leucine zipper
Probab=65.14 E-value=49 Score=35.10 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Q 004543 530 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYES----------------RWSEYEQKMKSMEEVWQKQM 593 (745)
Q Consensus 530 ~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~----------------~~~e~e~k~~~~ee~l~~q~ 593 (745)
..++..+..++.+|+.|+...+......-+|...++.+|..+.. .+.++|.+|..+..++++.+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~ 210 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKAL 210 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 35566777788888888887777666666666666666666555 23445666766666666555
Q ss_pred HHHHHHHHHHHH
Q 004543 594 RSLQSSLSIAKK 605 (745)
Q Consensus 594 ~~Lq~~L~~a~~ 605 (745)
.....++.+...
T Consensus 211 ~d~~~~~k~L~e 222 (278)
T PF15294_consen 211 QDKESQQKALEE 222 (278)
T ss_pred HHHHHHHHHHHH
Confidence 554444444333
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.70 E-value=46 Score=33.38 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQK 591 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~ 591 (745)
.+..+..++..|+.++...+..+.++..-++.+..++..+.-....+++++..++++-..
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555544333
No 80
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=64.63 E-value=14 Score=43.43 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 004543 471 RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 516 (745)
Q Consensus 471 ~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~ 516 (745)
...-|..||+.||.+.+|+.|.++|..+..+ .-|+..||.+.-
T Consensus 695 ~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~Si 737 (1106)
T KOG0162|consen 695 WDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYSI 737 (1106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHH
Confidence 3457889999999999999999998866543 334555555443
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.99 E-value=95 Score=33.37 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 571 YESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 571 ~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
+...+..++..+..+...+..++.+.+.
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555444443
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.46 E-value=32 Score=39.09 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
...+.+.+-|.+..++|+++..++.|.+.+..+.+.++++++++++.+..+++.+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777666777777777777777666665554
No 83
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.04 E-value=65 Score=31.17 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
.....|++.+......+..+++|....+..++...+.+.+++......+.+|.++...+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555666666677777777777777777777777777777777777776655544
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.02 E-value=1e+02 Score=33.31 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 530 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 599 (745)
Q Consensus 530 ~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~ 599 (745)
.++.....+++..|..++..++.+++..-.|+..|...|......-..+...+..+.+.-..-+..|.++
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888888888888888888888888888777777777777666666654444444433
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.89 E-value=99 Score=37.46 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=4.8
Q ss_pred ceEEEeccc
Q 004543 219 SFTVSHYAG 227 (745)
Q Consensus 219 ~F~I~HyaG 227 (745)
.|++++|-|
T Consensus 167 g~~~~~y~~ 175 (697)
T PF09726_consen 167 GFGFKSYVS 175 (697)
T ss_pred eccHHHHHH
Confidence 455555544
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.84 E-value=81 Score=36.88 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhHHHHHhHHHHhhHHHHHH-Hhhhc
Q 004543 687 LNPDKELRRLKQMFEAWKKDYGSRLRETKVI-LNKLG 722 (745)
Q Consensus 687 ~~~~~el~~lk~~f~~wkk~~~~rl~~~~~~-~~~~~ 722 (745)
+...+|||+ =.+.|+|.+..|-|+.|-. |.++.
T Consensus 609 vv~~eelr~---~~e~~~kr~ee~~r~~k~~~i~rii 642 (652)
T COG2433 609 VVDSEELRR---AIEEWKKRFEERERRQKEEDILRII 642 (652)
T ss_pred eecHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566655 4789999999998887754 55553
No 87
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.71 E-value=1.5e+02 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
..+...+.+..+.+..+.+|...|.-++...+.+...++.....+.+.|
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444444444
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.56 E-value=3e+02 Score=32.15 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--hhhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH----------HH
Q 004543 487 ARQKLKNIKYSSIMIQSVIRGWLVRRCSGD--ICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEA----------AL 554 (745)
Q Consensus 487 ~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~--l~~~~r~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~----------~l 554 (745)
-|+.+..+..-+.+.|++.-++..+++-.. |..+ ..++..++++.+.++....++.. .+
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l---------~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML---------KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 345555566666777777776665554321 1111 22233334444444444433332 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 555 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 555 ~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
+.+..|..+|.+.+...+.+...+..+.-..+.+.+....+++.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555566666666655555555555444444444444333333
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.34 E-value=85 Score=26.40 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 585 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ 585 (745)
+..+-.+-..|...-......+..+...+..+...+..+..++.+.+..+..+
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444443333
No 90
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.88 E-value=1.8e+02 Score=29.16 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=18.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004543 476 VVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGW 508 (745)
Q Consensus 476 ~~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~ 508 (745)
+.|...=||.+--+-+..++...-.+|..+.+.
T Consensus 75 VTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~ 107 (189)
T PF10211_consen 75 VTIDCPERGLLLLRVRDEYRMTLDAYQTLYESS 107 (189)
T ss_pred HHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777765555554444444445555543
No 91
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.73 E-value=72 Score=33.40 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV----------WQKQMRSLQSSLSIAKKSL 607 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~----------l~~q~~~Lq~~L~~a~~sl 607 (745)
.+...|+....+++.....|+.+.....++-..+..++.+++..+..+.+. |+.+....+..+..++..|
T Consensus 47 eea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 47 EEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444444444444444444444444433333 4444444444444444444
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.64 E-value=1.4e+02 Score=27.74 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDI---LHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIA 603 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~---l~~~l~~~e~~~~e~e~k~~~~ee~---l~~q~~~Lq~~L~~a 603 (745)
..++..+......+..++..+..++.. ...++..++.+..+++.+...+-+. ..++.++|+..+...
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334444444444444444444444322 2333444444444444444333333 223344444444433
No 93
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.35 E-value=1.4e+02 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 546 RVLKAEAALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 546 r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
|..+++..+.++.+|+..|+.+.+.+.+..+
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444444444333
No 94
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.33 E-value=2.4e+02 Score=30.49 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004543 585 MEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 585 ~ee~l~~q~~~Lq~~L~~ 602 (745)
....++.+...|+.+|..
T Consensus 148 ~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555555555543
No 95
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=60.86 E-value=1.4e+02 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 546 RVLKAEAALREKEEENDILHQRLQ 569 (745)
Q Consensus 546 r~~~~e~~l~~le~e~~~l~~~l~ 569 (745)
.+.+++.++.+++++.+.+....+
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333333
No 96
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=60.73 E-value=48 Score=30.03 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
+++..+..+-++...|+..+..+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.55 E-value=2.3e+02 Score=35.56 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHhHHHHHh----------HHHHhhHHHHHHHhhh
Q 004543 688 NPDKELRRLKQMFEAWKK----------DYGSRLRETKVILNKL 721 (745)
Q Consensus 688 ~~~~el~~lk~~f~~wkk----------~~~~rl~~~~~~~~~~ 721 (745)
+.+++.+.|+.=-+.=++ .+|..|-+++-.|++|
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l 701 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLREL 701 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444333 4455555555555554
No 98
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.86 E-value=1.7e+02 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.++.+...+++++..|+.+++.++.+...++.+...++++-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666655555555554
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.44 E-value=1.7e+02 Score=27.98 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
..++..++..+..++..+..++.++...+.+...+......++..++...+++
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444443
No 100
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.94 E-value=1.2e+02 Score=28.51 Aligned_cols=59 Identities=15% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
+..++..+..+...+..+..+....+..|...+..|.+-+..+.....++++...+|..
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666666666666666665555555555555554443
No 101
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.57 E-value=50 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.685 Sum_probs=15.5
Q ss_pred CHHHHHHHHHhHHHHHhHHHHhhH
Q 004543 689 PDKELRRLKQMFEAWKKDYGSRLR 712 (745)
Q Consensus 689 ~~~el~~lk~~f~~wkk~~~~rl~ 712 (745)
+.+|..++...|..|.+.|+.|=|
T Consensus 143 s~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 143 SPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776644
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.19 E-value=1.2e+02 Score=33.05 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQ 566 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~ 566 (745)
.++.+++....++.+++..++.+...+.+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.95 E-value=5.7e+02 Score=33.75 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=20.2
Q ss_pred CHHHHHHHHHhHHHHHhHHHHhhHHHHHH
Q 004543 689 PDKELRRLKQMFEAWKKDYGSRLRETKVI 717 (745)
Q Consensus 689 ~~~el~~lk~~f~~wkk~~~~rl~~~~~~ 717 (745)
-..+++.+...-+.|++....+.+...+.
T Consensus 457 ~~~~~~~~~~el~~~~~~~~e~~~~~~~~ 485 (1353)
T TIGR02680 457 THAAARARRDELDEEAEQAAARAELADEA 485 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888887777654333
No 104
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.04 E-value=1.7e+02 Score=27.37 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 551 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 605 (745)
Q Consensus 551 e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~ 605 (745)
...+..+.++...++.++..+..........+...+..|..+-..|+.++..++.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666666666666666666676666666666655543
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.77 E-value=1.3e+02 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e 579 (745)
.++..+..++.++....+.+..++.++.+..
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 106
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.63 E-value=2.2e+02 Score=31.43 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALR 555 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~ 555 (745)
...+..+|++...++|..++
T Consensus 297 VarENs~LqrQKle~e~~l~ 316 (442)
T PF06637_consen 297 VARENSDLQRQKLEAEQGLQ 316 (442)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555555433
No 107
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.23 E-value=3.5e+02 Score=31.16 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREK 557 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~l 557 (745)
+.+|...+..+.++++..
T Consensus 235 ~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 235 NSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 108
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.18 E-value=1.7e+02 Score=33.45 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 529 DSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 574 (745)
Q Consensus 529 ~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~ 574 (745)
....+.-+...++++++++..+.+..+.+.+||+.|+++......+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4455666666777777777777777777777777776655444333
No 109
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=56.12 E-value=5.4e+02 Score=32.87 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=6.8
Q ss_pred HHHHHHcCcCCcce
Q 004543 385 VAILHQFNILPEMY 398 (745)
Q Consensus 385 ~~ll~~~~~~~~~y 398 (745)
..+|..+++.++.|
T Consensus 125 ~~~l~~~~i~~~~~ 138 (1179)
T TIGR02168 125 QDLFLDTGLGKRSY 138 (1179)
T ss_pred HHHHhccCCCcccc
Confidence 34455555554443
No 110
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.01 E-value=1.3e+02 Score=33.88 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 531 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 531 ~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
..++.....++++++++......-..+.+........+++.+++.++.-..+.....+|++|+.+|---+
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 3444455555555555555544444444444444455555544444444444444445555555443333
No 111
>PRK12705 hypothetical protein; Provisional
Probab=55.98 E-value=2.5e+02 Score=32.66 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=12.3
Q ss_pred ccchhhhHHHHHHhhhcccccc
Q 004543 650 GLSVISRLAEEFDQRSQVFGDD 671 (745)
Q Consensus 650 ~~~~v~~l~~e~~~~~q~~~~~ 671 (745)
-..+|+.-.+||+..-.--+++
T Consensus 272 Ieevv~~~~~~~~~~i~~~ge~ 293 (508)
T PRK12705 272 IEEYVQKANEEFKQKIYEIGEE 293 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667776655544443
No 112
>PRK12704 phosphodiesterase; Provisional
Probab=55.94 E-value=1.5e+02 Score=34.58 Aligned_cols=7 Identities=0% Similarity=0.202 Sum_probs=2.7
Q ss_pred HHHHHhH
Q 004543 694 RRLKQMF 700 (745)
Q Consensus 694 ~~lk~~f 700 (745)
.+.+.-|
T Consensus 289 ~~~~~~~ 295 (520)
T PRK12704 289 EKARKEV 295 (520)
T ss_pred HHHHHHH
Confidence 3334333
No 113
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.14 E-value=1.6e+02 Score=34.35 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=12.1
Q ss_pred chhhhHHHHHHhhhcccccccc
Q 004543 652 SVISRLAEEFDQRSQVFGDDAK 673 (745)
Q Consensus 652 ~~v~~l~~e~~~~~q~~~~~~~ 673 (745)
.+|.+-.+||++.-.--+++|-
T Consensus 280 e~~~~~~~~~~~~i~~~g~~~~ 301 (514)
T TIGR03319 280 EMVEKATKEVDNAIREEGEQAA 301 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665554444443
No 114
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.07 E-value=57 Score=30.70 Aligned_cols=53 Identities=26% Similarity=0.332 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 529 DSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 581 (745)
Q Consensus 529 ~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k 581 (745)
..+++....+.+...+..+.++++++..+..|+..|+++|.........++.+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555566666777777777888888888888888888888777776666544
No 115
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.90 E-value=2e+02 Score=32.04 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh---hHHHHHHhhhhhhhHhhhhcCCChHHHHH------HHHHHHHHHHHHHHHHH----------
Q 004543 492 KNIKYSSIMIQSVIR---GWLVRRCSGDICLLKSVESKGNDSDEVLV------KASFLAELQRRVLKAEA---------- 552 (745)
Q Consensus 492 ~~~~~a~i~IQs~~R---~~~aRr~~~~l~~~~r~~~~~~~~~~l~~------~~~~~~~Lq~r~~~~e~---------- 552 (745)
+..+.|-+.||..+- -+..--.++++..+.++.+.....=+... +...+.+|+.....+|.
T Consensus 81 r~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~v 160 (552)
T KOG2129|consen 81 RPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFV 160 (552)
T ss_pred chhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCcccc
Q 004543 553 -----ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVE 627 (745)
Q Consensus 553 -----~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~sla~~~~~~~~~~s~~~~~~~~ 627 (745)
+++.++.+-...+--|+++..+.-+++..+.+.++.+-..+=.=-+.|+..+..|...-+..-++++.+..=..+
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~ 240 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKI 240 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcC
Q ss_pred ccccCCCCCCCCCCCCCccCCCccchhhhHHHHHHhhh
Q 004543 628 YSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRS 665 (745)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~e~~~~~~~v~~l~~e~~~~~ 665 (745)
..|.-.++ ..-.-.+..|..|.++-+
T Consensus 241 ~~~~gD~a------------~~~~~hi~~l~~EveRlr 266 (552)
T KOG2129|consen 241 PDVHGDEA------------AAEKLHIDKLQAEVERLR 266 (552)
T ss_pred ccccCchH------------HHHHHHHHHHHHHHHHHH
No 116
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=54.61 E-value=1.5e+02 Score=34.56 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.....|+....++......+..|+..|..++.+...++.++++.+..+....
T Consensus 185 ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 185 EEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555556666666666666666666666666665554
No 117
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.45 E-value=1.6e+02 Score=31.55 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004543 293 ATKFKGQLFQLMQ 305 (745)
Q Consensus 293 ~~~f~~~L~~Lm~ 305 (745)
...|...|..|-.
T Consensus 49 ~~~ye~el~~lr~ 61 (312)
T PF00038_consen 49 KEMYEEELRELRR 61 (312)
T ss_dssp HHHHHHHHHCHHH
T ss_pred ccchhhHHHHhHH
Confidence 3344444443333
No 118
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.10 E-value=2.2e+02 Score=28.33 Aligned_cols=12 Identities=25% Similarity=-0.188 Sum_probs=5.4
Q ss_pred HHHHHhhhHHHH
Q 004543 476 VVIQRQIKSRVA 487 (745)
Q Consensus 476 ~~IQ~~~R~~~~ 487 (745)
..+|...|.+.+
T Consensus 89 ~~~~~~~~~fra 100 (192)
T PF05529_consen 89 TEDQVLAKKFRA 100 (192)
T ss_pred hhHHHHHHHHHH
Confidence 344544444443
No 119
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.68 E-value=2.1e+02 Score=30.31 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 578 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~ 578 (745)
|+.++.+.+.++.+-+-|+.+|+.+|..+.+.|.|.
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555554444433
No 120
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.60 E-value=91 Score=31.22 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004543 543 LQRRVLKAE 551 (745)
Q Consensus 543 Lq~r~~~~e 551 (745)
|+..+...+
T Consensus 74 l~~~~~~~~ 82 (188)
T PF03962_consen 74 LQKEIEELE 82 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 121
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.60 E-value=94 Score=33.93 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
..++..++.++.+...++..+..+...++.+++..+..+.++.+++..+.+++.+.....+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 122
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.54 E-value=1.5e+02 Score=30.66 Aligned_cols=44 Identities=27% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 585 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ 585 (745)
.++....++.......+..+..|..+|...+.+....+.++..+
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444443333
No 123
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.50 E-value=1.1e+02 Score=32.19 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=21.2
Q ss_pred hhhhHHHHHHhhhcccccccceeEeecCCcc--cCCCCCHH
Q 004543 653 VISRLAEEFDQRSQVFGDDAKFLVEVKSGQV--EASLNPDK 691 (745)
Q Consensus 653 ~v~~l~~e~~~~~q~~~~~~~~~~e~~~~~~--~~~~~~~~ 691 (745)
.-.+..+|.+.|.. .+-.+++|---|..++ .+.||+.|
T Consensus 167 L~ekynkeveerkr-le~e~k~lq~k~~~q~~~qstmsHRd 206 (307)
T PF10481_consen 167 LQEKYNKEVEERKR-LEAEVKALQAKKASQAAPQSTMSHRD 206 (307)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHhcccCCCcCccccccHHH
Confidence 34455677777776 4555555543334444 55676554
No 124
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.16 E-value=77 Score=28.91 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004543 550 AEAALREKEEENDILHQRLQQ 570 (745)
Q Consensus 550 ~e~~l~~le~e~~~l~~~l~~ 570 (745)
++..+..+-++...|+..+..
T Consensus 13 le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 125
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.11 E-value=1.2e+02 Score=24.85 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 550 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 586 (745)
Q Consensus 550 ~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~e 586 (745)
+...+..+..|...|.++++....+++.+..++.+|+
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3344445555555555555555555555555555554
No 126
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.63 E-value=1.9e+02 Score=34.72 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 004543 477 VIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 516 (745)
Q Consensus 477 ~IQ~~~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~ 516 (745)
.|++.-+..-.|..-++..+|++.||+.|||+++|+.+..
T Consensus 12 fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 12 FLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444444444555689999999999999998764
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.51 E-value=2.8e+02 Score=29.18 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.7
Q ss_pred CCCHHHHHHHH
Q 004543 687 LNPDKELRRLK 697 (745)
Q Consensus 687 ~~~~~el~~lk 697 (745)
++|.+.|.-|.
T Consensus 282 l~~~~~l~nl~ 292 (302)
T PF10186_consen 282 LDPRDTLGNLL 292 (302)
T ss_pred CCchhhHHHHH
Confidence 44444444443
No 128
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.32 E-value=1.9e+02 Score=34.39 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQ 592 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q 592 (745)
..+...|++.+.++..+..+.++++..++++++.++.+...++..+..+..+..++
T Consensus 710 raE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~ 765 (961)
T KOG4673|consen 710 RAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQE 765 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666667777777777777777777777766666555554443
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.22 E-value=2.5e+02 Score=28.44 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 539 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 539 ~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.+..+..++...+.++..++.+.+.|.+++...+.+..++..+......+.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677778888888888888888888888888877665555443
No 130
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.16 E-value=1.6e+02 Score=28.49 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 603 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a 603 (745)
..+-.....++..+......++.|++++...+...+.-.+.+.+++...+....++......+
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555566666677777777777777777777777777777777777766666665554443
No 131
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.99 E-value=90 Score=33.88 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCCeeeeecC
Q 004543 300 LFQLMQRLESTTPHFIRCIK 319 (745)
Q Consensus 300 L~~Lm~~L~~t~~hfIrCIk 319 (745)
+..||..+....|-|-+-+-
T Consensus 128 iq~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 128 IQELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred HHHHHHHhcCCCccccCCCC
Confidence 34455555555665554443
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.82 E-value=1.9e+02 Score=29.26 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccc
Q 004543 534 LVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS---MEEVWQKQMRSLQSSLSIAKKSLAI 609 (745)
Q Consensus 534 ~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~---~ee~l~~q~~~Lq~~L~~a~~sla~ 609 (745)
..+..++..|+..+.++...+...+.....+...+..-..+++..+..+.. ..+-++.....++.++...+..++.
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 334444555555555555555555555555544443333333333322221 1122334444445455544444443
No 133
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.25 E-value=1.6e+02 Score=35.42 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.6
Q ss_pred HHHhhhHHH
Q 004543 478 IQRQIKSRV 486 (745)
Q Consensus 478 IQ~~~R~~~ 486 (745)
|.....+.+
T Consensus 171 l~~Ai~~Ll 179 (650)
T TIGR03185 171 LKEAIEVLL 179 (650)
T ss_pred HHHHHHHHh
Confidence 334444443
No 134
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.25 E-value=1.6e+02 Score=35.82 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e 579 (745)
+..++...++++.++..+....+.-++.+..+|+++.+..
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333333334444444433333
No 135
>PRK00106 hypothetical protein; Provisional
Probab=51.19 E-value=2.1e+02 Score=33.49 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=26.1
Q ss_pred cchhhhHHHHHHhhhcccccccceeEeecCCcccCCCCCH--HHHHHHHHhHHH
Q 004543 651 LSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPD--KELRRLKQMFEA 702 (745)
Q Consensus 651 ~~~v~~l~~e~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~--~el~~lk~~f~~ 702 (745)
-.+|.+-.+||++.-.--+++| +.|+..+. +||+ .=|=+||-|..-
T Consensus 300 Ee~v~k~~~e~~~~i~~~Ge~a--~~~lg~~~----~~~e~~~~lg~l~~r~sy 347 (535)
T PRK00106 300 EELVEKNRLEMDNRIREYGEAA--AYEIGAPN----LHPDLIKIMGRLQFRTSY 347 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHcCCCC----CCHHHHHHHHHHhhhccC
Confidence 4667777888887766555555 44555543 4443 234455555443
No 136
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.14 E-value=2.3e+02 Score=27.58 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 598 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~ 598 (745)
+.+.++..+.+++..|..+.+.........+.++..+++.|......|..
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~ 96 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQS 96 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444444555555555555444444433
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.03 E-value=1.7e+02 Score=35.82 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHH---hHHHHhhHHHHHHH
Q 004543 692 ELRRLKQMFEAWK---KDYGSRLRETKVIL 718 (745)
Q Consensus 692 el~~lk~~f~~wk---k~~~~rl~~~~~~~ 718 (745)
|----|.+|..=| ++-...||-..+.+
T Consensus 564 et~dyk~~fa~skayaraie~QlrqiEv~~ 593 (1243)
T KOG0971|consen 564 ETFDYKIKFAESKAYARAIEMQLRQIEVAQ 593 (1243)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445667776533 44455555544443
No 138
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.97 E-value=1.7e+02 Score=26.30 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREK--EEENDILHQRLQQYESRWSEYEQKMKSMEE 587 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~l--e~e~~~l~~~l~~~e~~~~e~e~k~~~~ee 587 (745)
....+.....|+...|.+++.+ .++...|+-++.+.+.+..++++++..+..
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344455566666777776666 666666666666666666666666655543
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=1.6e+02 Score=34.64 Aligned_cols=10 Identities=40% Similarity=0.328 Sum_probs=4.8
Q ss_pred hhhHHHHHHh
Q 004543 654 ISRLAEEFDQ 663 (745)
Q Consensus 654 v~~l~~e~~~ 663 (745)
-.+-+++|..
T Consensus 579 s~~A~e~f~~ 588 (652)
T COG2433 579 SHAAAEEFFK 588 (652)
T ss_pred chHHHHHHhh
Confidence 3444555543
No 140
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.55 E-value=1.6e+02 Score=35.53 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQK 591 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~ 591 (745)
.+...++.+..||.++.++|.++..+++-.+.++.++.+.+-++++..+++..++++|..
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344455556666666666666666666666666666666666666666665555555443
No 141
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.42 E-value=3.2e+02 Score=28.33 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 547 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 547 ~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
+.+...+...|..|-....++|++-...+..+|.-+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.35 E-value=1.1e+02 Score=37.10 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=13.6
Q ss_pred cCCeeeeecCCCCCCCCCC
Q 004543 310 TTPHFIRCIKPNNFQSPGL 328 (745)
Q Consensus 310 t~~hfIrCIkPN~~~~p~~ 328 (745)
|..++|.|-+|.....|..
T Consensus 423 ~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 423 CIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred cceEEEeccCCCCCCCCCC
Confidence 4468999999977655543
No 143
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.11 E-value=4.9e+02 Score=30.38 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=9.2
Q ss_pred HhHHHHHhHHHHhhHH
Q 004543 698 QMFEAWKKDYGSRLRE 713 (745)
Q Consensus 698 ~~f~~wkk~~~~rl~~ 713 (745)
.-++.=+++....+++
T Consensus 280 e~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 280 EMVEKATKEVDNAIRE 295 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455666666666
No 144
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.09 E-value=2.1e+02 Score=34.86 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=13.6
Q ss_pred eEEEeccceeEEeccchhhhhcc
Q 004543 220 FTVSHYAGEVIYDTTGFLEKNRD 242 (745)
Q Consensus 220 F~I~HyaG~V~Y~~~gfleKN~D 242 (745)
-.|-|=.|+|.|-..+...+|.+
T Consensus 243 ~~vL~~ng~v~~~~~~l~~~~~~ 265 (717)
T PF10168_consen 243 IFVLRENGDVYLLYTSLQDENSN 265 (717)
T ss_pred EEEEecCCCEEEEEEecccCccc
Confidence 34566678886666665455443
No 145
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.89 E-value=3.8e+02 Score=34.30 Aligned_cols=13 Identities=8% Similarity=-0.205 Sum_probs=7.9
Q ss_pred HHHHHHHHcCCCH
Q 004543 29 GLITVAKLIGCDI 41 (745)
Q Consensus 29 ~l~~~a~LLgv~~ 41 (745)
.++.+.-.||-.+
T Consensus 39 ildAi~~~l~~~~ 51 (1164)
T TIGR02169 39 IGDAILFALGLSS 51 (1164)
T ss_pred HHHHHHHHhccch
Confidence 4666666776653
No 146
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.42 E-value=2e+02 Score=31.64 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 550 AEAALREKEEENDILHQRLQQYESRWSEYEQK----MKSMEEVWQKQMRSLQSSLSIAKK 605 (745)
Q Consensus 550 ~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k----~~~~ee~l~~q~~~Lq~~L~~a~~ 605 (745)
+.++...++.+...+..+++++.....+.|.. -..+-.+-+..+.+|+..|+.++.
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 33344445555556666666666665555542 222333334445555555554443
No 147
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=48.35 E-value=3.9e+02 Score=34.12 Aligned_cols=14 Identities=7% Similarity=0.034 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCCH
Q 004543 28 EGLITVAKLIGCDI 41 (745)
Q Consensus 28 ~~l~~~a~LLgv~~ 41 (745)
..+..+.-+||..+
T Consensus 38 ~ll~ai~~~lg~~~ 51 (1179)
T TIGR02168 38 NIVDAIRWVLGEQS 51 (1179)
T ss_pred HHHHHHHHHHcCCc
Confidence 34666677788764
No 148
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=47.80 E-value=3.2e+02 Score=27.85 Aligned_cols=77 Identities=12% Similarity=0.286 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004543 530 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 606 (745)
Q Consensus 530 ~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~s 606 (745)
.+.+.....-..+|-++.......+.........|+..++++..++...+.+...|..-..+++.....+++..+.+
T Consensus 82 ~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~ 158 (207)
T PF05010_consen 82 YADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSK 158 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666667666666666666666667777777777777666666666555555555444444444433
No 149
>PRK00106 hypothetical protein; Provisional
Probab=47.73 E-value=2.6e+02 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=9.6
Q ss_pred HhHHHHHhHHHHhhHHH
Q 004543 698 QMFEAWKKDYGSRLRET 714 (745)
Q Consensus 698 ~~f~~wkk~~~~rl~~~ 714 (745)
.-++.=+++....++++
T Consensus 301 e~v~k~~~e~~~~i~~~ 317 (535)
T PRK00106 301 ELVEKNRLEMDNRIREY 317 (535)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444556666666664
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.21 E-value=97 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 531 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQ 566 (745)
Q Consensus 531 ~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~ 566 (745)
+++..+..++.+|+.++.++...+..++.++..|..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555555555444444444444433
No 151
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=47.05 E-value=26 Score=39.10 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=10.5
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q 004543 474 AAVVIQRQIKSRVARQKLK 492 (745)
Q Consensus 474 Aa~~IQ~~~R~~~~R~~~~ 492 (745)
||+.||+++|+|.+|...+
T Consensus 19 aAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 19 AAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 152
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.79 E-value=1.2e+02 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
++.++...+.++.+.++....++......+..+..+..++.++++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554443
No 153
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=45.06 E-value=1.9e+02 Score=29.04 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ 580 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~ 580 (745)
.+.+++.-++..+..-++....+.++|.+.+....+.+.
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er 46 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESER 46 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 344444444444444444444444444444444333333
No 154
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.95 E-value=1.8e+02 Score=24.10 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQYESRW 575 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~ 575 (745)
|..++..+-..+.-++-|+.+|+++...+..+.
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 333444444444444444444444444333333
No 155
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.91 E-value=3.8e+02 Score=27.89 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 586 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~e 586 (745)
.+|..++..+.+++..++..+..++..+...+.++.+++.++..++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 156
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.73 E-value=2.4e+02 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDIL--HQRLQQYESRWSEYEQKMKSMEEVWQ 590 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l--~~~l~~~e~~~~e~e~k~~~~ee~l~ 590 (745)
+.+.++..++...+.++..+|.+.+.| +..+..++-++.+++-.+..+.+.++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457777778888888888888888888 88888888888888887777777764
No 157
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.60 E-value=3.2e+02 Score=34.35 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ---KMKSMEEVWQKQMRSLQSSLSIAKKSL 607 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~---k~~~~ee~l~~q~~~Lq~~L~~a~~sl 607 (745)
..|..+..+.+..+.....+...+++++++.+..+.+.+. ++...+.++..+...|+.++..++..+
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDL 548 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555444333 344445555555556666655554433
No 158
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.95 E-value=3.2e+02 Score=30.70 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 609 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~sla~ 609 (745)
.++..+..+.++|+++.++..+-+...-|...|+..+.+ --++.++.+-. ..+..+++++.+..+|..|.+.|..
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e-a~rl~elreg~--e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE-APRLSELREGV--ENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh-hhhhhhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666666666655544444444444444431 11222222111 1111223455566666666665554
No 159
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.77 E-value=3.3e+02 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 579 EQKMKSMEEVWQKQMRSLQSSLSIAK 604 (745)
Q Consensus 579 e~k~~~~ee~l~~q~~~Lq~~L~~a~ 604 (745)
+.++..+..++...+..+..+++.+|
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555444
No 160
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.59 E-value=1.1e+02 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQYESR 574 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~ 574 (745)
++.++...+..+..++.|++.+.+.++..++.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555444333
No 161
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=42.76 E-value=3.7e+02 Score=27.09 Aligned_cols=13 Identities=23% Similarity=0.164 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 004543 453 QSFIRGEKIRKEY 465 (745)
Q Consensus 453 Qs~~Rg~~aRr~~ 465 (745)
=+++=||+.++..
T Consensus 12 vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 12 VGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566555443
No 162
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.69 E-value=2.1e+02 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQK 581 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k 581 (745)
++.++.++|..|.++.+.......+++.+
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555544444444444433
No 163
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.65 E-value=1.7e+02 Score=33.38 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 581 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k 581 (745)
+..|--++.+.+.++..+..+|+.|+++.+.+.++......+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 444555666666666677777777776666666655555443
No 164
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.61 E-value=2.3e+02 Score=27.80 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 531 DEVLVKASFLAELQRRVLKAEAALREKEEENDIL 564 (745)
Q Consensus 531 ~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l 564 (745)
++++.+...+..|+..+..+......++.|+..|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444444443
No 165
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.37 E-value=1.5e+02 Score=23.85 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 550 AEAALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 550 ~e~~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
++..+..++.++..|..++..+...+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.55 E-value=2.3e+02 Score=33.05 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRL 568 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l 568 (745)
+..+...|..+..++..++.++++++..+.++.
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666665555544
No 167
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.51 E-value=6e+02 Score=29.33 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
.+..++.++..++.+++.......+..+.+...++.+..+.+.|
T Consensus 75 ~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 75 INTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 168
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=41.47 E-value=30 Score=24.66 Aligned_cols=18 Identities=22% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 004543 473 RAAVVIQRQIKSRVARQK 490 (745)
Q Consensus 473 ~Aa~~IQ~~~R~~~~R~~ 490 (745)
-|+..||.+||.+..|+.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488889999988887764
No 169
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.43 E-value=1.7e+02 Score=35.26 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004543 692 ELRRLKQ 698 (745)
Q Consensus 692 el~~lk~ 698 (745)
++.+|..
T Consensus 422 ~i~~l~e 428 (650)
T TIGR03185 422 QIAQLLE 428 (650)
T ss_pred HHHHHHH
Confidence 3333333
No 170
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.64 E-value=2.7e+02 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.+...+..++..+..++++++.+.-+...++.++..+.+++
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444
No 171
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.04 E-value=5.6e+02 Score=28.44 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhHh-hhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 482 IKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKS-VESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEE 560 (745)
Q Consensus 482 ~R~~~~R~~~~~~~~a~i~IQs~~R~~~aRr~~~~l~~~~r-~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e 560 (745)
||.++.+. +....++..+..-.++.+.+-.-.--+.+-+ .....-...++.-+-.+....+.++.+++.+..+...-
T Consensus 218 WR~hleqm--~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 218 WRSHLEQM--KQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 004543 561 NDILHQRLQQYESRWSEYEQKMKSMEEV---------WQKQMRSLQSSL 600 (745)
Q Consensus 561 ~~~l~~~l~~~e~~~~e~e~k~~~~ee~---------l~~q~~~Lq~~L 600 (745)
+..+..+|.+..++++....+|..-... .++.+..|..++
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
No 172
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.04 E-value=2.7e+02 Score=26.99 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEE---ENDILHQRLQQYESRW 575 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~---e~~~l~~~l~~~e~~~ 575 (745)
...++..++..+..+...+..+.. .++.|+.+++.++...
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344555555555555555555555 3444444444443333
No 173
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.98 E-value=2.8e+02 Score=32.98 Aligned_cols=46 Identities=30% Similarity=0.371 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 581 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k 581 (745)
...++.+|+..+.++...+..++.+.+.+...+.+...+..+.+..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544444444444444433
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.78 E-value=6.8e+02 Score=29.35 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHhHHHHhhHHHHHHHhhh
Q 004543 691 KELRRLKQMFEAWKKDYGSRLRETKVILNKL 721 (745)
Q Consensus 691 ~el~~lk~~f~~wkk~~~~rl~~~~~~~~~~ 721 (745)
.||.++-.+|+-=|+.=..=.++.+.++.+|
T Consensus 467 ~el~~~~~~~~~~k~e~eee~~k~~~E~e~l 497 (581)
T KOG0995|consen 467 LELKKAESKYELKKEEAEEEWKKCRKEIEKL 497 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444444444444444443
No 175
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.73 E-value=2.8e+02 Score=32.94 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.6
Q ss_pred eccceeEEec
Q 004543 224 HYAGEVIYDT 233 (745)
Q Consensus 224 HyaG~V~Y~~ 233 (745)
+|.|++-|.+
T Consensus 79 Gy~~digyq~ 88 (594)
T PF05667_consen 79 GYRGDIGYQT 88 (594)
T ss_pred CCCCCCcchh
Confidence 5788898863
No 176
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.73 E-value=1.7e+02 Score=24.46 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILH-QRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~-~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
...+.+.+..+.+++.-+..|+-|...+- ..-..+..++..|...+..+..++
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777777777777665553 233344444444444444444433
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.55 E-value=2.2e+02 Score=30.92 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=6.2
Q ss_pred HHHhccCCee
Q 004543 305 QRLESTTPHF 314 (745)
Q Consensus 305 ~~L~~t~~hf 314 (745)
+-|+.|+.||
T Consensus 14 dFL~~t~I~F 23 (312)
T smart00787 14 DFLNMTGIRF 23 (312)
T ss_pred HHHHHcCcee
Confidence 3456677777
No 178
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.42 E-value=2e+02 Score=28.01 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQ 569 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~ 569 (745)
.|+....++..++..|+.|+..|.+++.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443333
No 179
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.12 E-value=2.6e+02 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHhHHHH
Q 004543 690 DKELRRLKQMFEAWKKDYGS 709 (745)
Q Consensus 690 ~~el~~lk~~f~~wkk~~~~ 709 (745)
.++|..|..+...=+++|..
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666643
No 180
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.09 E-value=3.6e+02 Score=26.07 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQ---RLQQYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~---~l~~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
.+...+..+...+......+..|+. ..+.+..++.+++.......+.++.++..+
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444 344444455555555554445555544444
No 181
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=38.75 E-value=4.3e+02 Score=26.70 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 556 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 601 (745)
Q Consensus 556 ~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~ 601 (745)
+..+++..+.+++-.++-+..+++.+-......-+..+.+|+..|.
T Consensus 104 ~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 104 EKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665544444445555666666665
No 182
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=38.38 E-value=3.4e+02 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 593 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~ 593 (745)
+-.++|..+.+.++......+++..|......|++..++..
T Consensus 135 E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaE 175 (265)
T PF06409_consen 135 EHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAE 175 (265)
T ss_pred HHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444445555555555555544433
No 183
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=38.16 E-value=3.8e+02 Score=33.80 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=11.9
Q ss_pred hhhHHHHHHhhhcccccccceeEeecC
Q 004543 654 ISRLAEEFDQRSQVFGDDAKFLVEVKS 680 (745)
Q Consensus 654 v~~l~~e~~~~~q~~~~~~~~~~e~~~ 680 (745)
++-.-..+++.-.+-.-|+..-+++-.
T Consensus 630 ~~~~~e~~q~~~~~~k~~~~s~l~~i~ 656 (1041)
T KOG0243|consen 630 LSEVLESLQQLQEVLKKDSESCLEVIN 656 (1041)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 344444444444444444444444443
No 184
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.01 E-value=2.2e+02 Score=30.11 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=8.9
Q ss_pred eeecCCCCccchhhHHH
Q 004543 349 ISRSGFPTRMSHQKFAR 365 (745)
Q Consensus 349 i~r~Gyp~r~~~~eF~~ 365 (745)
+.-.||-++.++...++
T Consensus 87 V~VngY~Vk~S~~silq 103 (269)
T PF05278_consen 87 VSVNGYQVKPSQVSILQ 103 (269)
T ss_pred eeECCEEEcHhHHHHHH
Confidence 44456666655544443
No 185
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.91 E-value=5.5e+02 Score=32.77 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 494 IKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYES 573 (745)
Q Consensus 494 ~~~a~i~IQs~~R~~~aRr~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~ 573 (745)
.+.....+|.-|-+|+.+..-.+=...-.+.+.......-......+.+++..+......+.+...++.+++..|.....
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccc
Q 004543 574 RWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAIDDS 612 (745)
Q Consensus 574 ~~~e~e~k~~~~ee~---l~~q~~~Lq~~L~~a~~sla~~~~ 612 (745)
++.+.+..+..+..+ +..+...+...+..++.++....+
T Consensus 557 e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 557 ELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 186
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.76 E-value=2.1e+02 Score=22.92 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 542 ELQRRVLKAEAALREKEEENDILHQRLQQ 570 (745)
Q Consensus 542 ~Lq~r~~~~e~~l~~le~e~~~l~~~l~~ 570 (745)
.|+.++..++.+...+..++..|..++..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 187
>smart00338 BRLZ basic region leucin zipper.
Probab=37.54 E-value=1.3e+02 Score=24.19 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEY 578 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~ 578 (745)
.++.++..++.+|..|..++..++.++..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555544444444444333
No 188
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.33 E-value=4.9e+02 Score=26.91 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQ 569 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~ 569 (745)
+......+.....++..++..+..+++++..+...+.
T Consensus 122 l~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 122 LKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555554444444443
No 189
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=36.96 E-value=3.8e+02 Score=28.82 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
.+..+.-.++.+|+.+.+.+..+.+++.-....+..+..+..++..+++++.++..+
T Consensus 173 aLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 173 ALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777777777666666666666666666666666555444
No 190
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.72 E-value=4.1e+02 Score=33.81 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=4.4
Q ss_pred CcCchhhhHh
Q 004543 119 DRNSFEQFCI 128 (745)
Q Consensus 119 ~~NsfEQlcI 128 (745)
...++.++..
T Consensus 97 ~gGSL~~lL~ 106 (1021)
T PTZ00266 97 DAGDLSRNIQ 106 (1021)
T ss_pred CCCcHHHHHH
Confidence 3444544443
No 191
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.57 E-value=7.9e+02 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHhHHHHHhHH
Q 004543 687 LNPDKELRRLKQMFEAWKKDY 707 (745)
Q Consensus 687 ~~~~~el~~lk~~f~~wkk~~ 707 (745)
+...+|+..++.|++.=+.+|
T Consensus 966 ~~Aiee~e~~~~r~~~l~~~~ 986 (1163)
T COG1196 966 LRAIEEYEEVEERYEELKSQR 986 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444
No 192
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.44 E-value=1.6e+02 Score=23.37 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 547 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 547 ~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
+.++|.++..++-....++.++++....++++++..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665555555555444
No 193
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.79 E-value=5.2e+02 Score=26.80 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 606 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~s 606 (745)
+..|.........+|+.....+..|+..+.+.+.+....+..+..+.+ +...|..+....+.+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e----ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE----EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444333333333333 334445555555555
No 194
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.49 E-value=2.7e+02 Score=29.92 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 004543 497 SSIMIQSVIR 506 (745)
Q Consensus 497 a~i~IQs~~R 506 (745)
+..++|.+..
T Consensus 174 a~evL~~fl~ 183 (297)
T PF02841_consen 174 AEEVLQEFLQ 183 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 195
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.47 E-value=4.1e+02 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=14.3
Q ss_pred CCCccchhhHHHhhccccccc
Q 004543 354 FPTRMSHQKFARRYGFLLLES 374 (745)
Q Consensus 354 yp~r~~~~eF~~Ry~~L~~~~ 374 (745)
-|..+||.+=+..-++|...+
T Consensus 281 ~~~svpy~~a~~n~ril~sst 301 (518)
T PF10212_consen 281 CPESVPYEEALANRRILLSST 301 (518)
T ss_pred CCccCChHHHHhhhHHHhhhH
Confidence 466777877776666776544
No 196
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.29 E-value=5.6e+02 Score=27.94 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 004543 589 WQKQMRSLQSSLSIAKKSLAI 609 (745)
Q Consensus 589 l~~q~~~Lq~~L~~a~~sla~ 609 (745)
+++++..++++...++.++..
T Consensus 201 L~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888777776655
No 197
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.16 E-value=7.1e+02 Score=31.49 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 544 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 544 q~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
..++.+.+..+...+.....+...++.++..+...+.....++.+.
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei 347 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEI 347 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555544444444443
No 198
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.02 E-value=4e+02 Score=31.98 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWS-EYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 607 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~-e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~sl 607 (745)
+......++.+...+..+.+.+.+..++...++.+|........ .+++++..++..+.+++.+++..|..|++.+
T Consensus 530 Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREH 605 (739)
T PF07111_consen 530 LQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREH 605 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666777777777777777666554333 5566777777777777777777665555444
No 199
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.99 E-value=5.1e+02 Score=27.05 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 555 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 555 ~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
..+++++..|..+..........++.++......
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444333333
No 200
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=34.93 E-value=2e+02 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQYESRWSEYEQ 580 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~ 580 (745)
.++.++..++.+|.+|+++...+++++..+..
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777766666655444
No 201
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.71 E-value=3.3e+02 Score=25.88 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=4.8
Q ss_pred HHHHHHHhhHHH
Q 004543 499 IMIQSVIRGWLV 510 (745)
Q Consensus 499 i~IQs~~R~~~a 510 (745)
|-++..+.++.+
T Consensus 22 Vd~~~v~~~~~~ 33 (158)
T PF03938_consen 22 VDVDKVFQESPA 33 (158)
T ss_dssp E-HHHHHHHHHH
T ss_pred eeHHHHHHhCHH
Confidence 334444444433
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.66 E-value=7.5e+02 Score=28.31 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=8.6
Q ss_pred cchhhhHHHHHHhhhc
Q 004543 651 LSVISRLAEEFDQRSQ 666 (745)
Q Consensus 651 ~~~v~~l~~e~~~~~q 666 (745)
.+.+-++-.|+....|
T Consensus 457 ~~~I~~~i~eln~~i~ 472 (622)
T COG5185 457 NESIKKSILELNDEIQ 472 (622)
T ss_pred hHhHHHHHHHHhHHHH
Confidence 3445555555555555
No 203
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.42 E-value=2.9e+02 Score=27.16 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALR 555 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~ 555 (745)
+++.+..|++...-.+++++
T Consensus 91 l~ek~q~l~~t~s~veaEik 110 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIK 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 204
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.31 E-value=1.1e+03 Score=30.04 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=9.8
Q ss_pred HHhhHHHHHHHhhhcC
Q 004543 708 GSRLRETKVILNKLGS 723 (745)
Q Consensus 708 ~~rl~~~~~~~~~~~~ 723 (745)
+-+++.+++++.-|.+
T Consensus 709 ~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 709 KRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3456666666666655
No 205
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.11 E-value=9.4e+02 Score=32.10 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 489 QKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRL 568 (745)
Q Consensus 489 ~~~~~~~~a~i~IQs~~R~~~aRr~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l 568 (745)
+.|.........++..+......-.-..-+.............++.....++..++.++..+..++.+++.+...++.++
T Consensus 334 ~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 334 SDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004543 569 QQYESRWSEYEQ-------------KMKSMEEVWQKQMRSLQSSLSIAKKSL 607 (745)
Q Consensus 569 ~~~e~~~~e~e~-------------k~~~~ee~l~~q~~~Lq~~L~~a~~sl 607 (745)
..++..+..++. .+..+-+.....+.+++.++...+..+
T Consensus 414 ~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL 465 (1486)
T PRK04863 414 IQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL 465 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 206
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.08 E-value=3.7e+02 Score=29.13 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=5.5
Q ss_pred hHHHHhhHHH
Q 004543 705 KDYGSRLRET 714 (745)
Q Consensus 705 k~~~~rl~~~ 714 (745)
-|||-+|-++
T Consensus 286 sd~KfKl~Ka 295 (302)
T PF09738_consen 286 SDYKFKLQKA 295 (302)
T ss_pred HHHHHHHHHH
Confidence 3666666433
No 207
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.83 E-value=5.9e+02 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 564 LHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 564 l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
..+.|+..+.+++++++++...+..+
T Consensus 398 eeeklk~e~qkikeleek~~eeedal 423 (445)
T KOG2891|consen 398 EEEKLKAEEQKIKELEEKIKEEEDAL 423 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666655554
No 208
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.61 E-value=3.7e+02 Score=33.21 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=7.8
Q ss_pred cceeEEe-ccchhhhhcc
Q 004543 226 AGEVIYD-TTGFLEKNRD 242 (745)
Q Consensus 226 aG~V~Y~-~~gfleKN~D 242 (745)
.|...|- ....++-|..
T Consensus 218 sg~t~y~ep~~~~~ln~~ 235 (782)
T PRK00409 218 SGATLYIEPQSVVELNNE 235 (782)
T ss_pred CCCEEEEEcHHHHHHHHH
Confidence 3444443 3335555553
No 209
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.60 E-value=1.6e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
+++++.++++++..++.+|+.|+.+++.+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555544443
No 210
>PRK00846 hypothetical protein; Provisional
Probab=33.57 E-value=3e+02 Score=23.43 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 551 EAALREKEEENDILHQRLQQYESRW 575 (745)
Q Consensus 551 e~~l~~le~e~~~l~~~l~~~e~~~ 575 (745)
+.++.++|..++-...-++.+...+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v 36 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEAL 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 211
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.55 E-value=9.2e+02 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCHHH
Q 004543 28 EGLITVAKLIGCDIGE 43 (745)
Q Consensus 28 ~~l~~~a~LLgv~~~~ 43 (745)
.-|+.+|-.|||..-.
T Consensus 40 NILDsICFvLGI~nl~ 55 (1174)
T KOG0933|consen 40 NILDSICFVLGITNLS 55 (1174)
T ss_pred HHHHHHHHHHccchHH
Confidence 4689999999997543
No 212
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=33.54 E-value=3.6e+02 Score=24.27 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 539 FLAELQRRVLKAEAALREKEEENDILHQRLQQYE 572 (745)
Q Consensus 539 ~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e 572 (745)
....++.++..++.+...+...+.++-.++..+.
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 213
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.45 E-value=3.5e+02 Score=24.06 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAALREKEEENDILHQ---RLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~---~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
.+.....+++..+..+.++...+..++..+.. ..+.+..+..++..++..+++.+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333332 23333334444444444444433
No 214
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.45 E-value=2.9e+02 Score=25.06 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
+..++..+..+...+.++...+.++.+||+.|+-+.+.+.+++.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555666555555555444443
No 215
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.19 E-value=4.3e+02 Score=25.08 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALR 555 (745)
Q Consensus 543 Lq~r~~~~e~~l~ 555 (745)
|+.++.+++.++.
T Consensus 78 L~~~~~~~ere~~ 90 (151)
T PF11559_consen 78 LKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 216
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=33.10 E-value=3.5e+02 Score=26.96 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 599 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~ 599 (745)
+.+.-.++.+.......|.+-|..|+++|++.......+...+..+...|..-..+|...
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 217
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.09 E-value=3.6e+02 Score=28.60 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ-------KMKSMEEVWQKQ 592 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~-------k~~~~ee~l~~q 592 (745)
...+...++.+..++.....++.+++..+.+|+..++++..++. ....+|++|+++
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555566666666666665553 444455555443
No 218
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=32.85 E-value=6e+02 Score=30.97 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004543 591 KQMRSLQSSLSIAKK 605 (745)
Q Consensus 591 ~q~~~Lq~~L~~a~~ 605 (745)
.++..++-.|+++.+
T Consensus 508 ~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 508 VNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHhhhHHHHHh
Confidence 444555555555443
No 219
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.66 E-value=5.6e+02 Score=27.18 Aligned_cols=6 Identities=33% Similarity=0.800 Sum_probs=2.4
Q ss_pred cccccc
Q 004543 405 LFFRAG 410 (745)
Q Consensus 405 VFlr~g 410 (745)
||-++|
T Consensus 105 If~KHG 110 (269)
T PF05278_consen 105 IFEKHG 110 (269)
T ss_pred HHHhCc
Confidence 344443
No 220
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.58 E-value=3.8e+02 Score=33.06 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.3
Q ss_pred cceeEEe-ccchhhhhcc
Q 004543 226 AGEVIYD-TTGFLEKNRD 242 (745)
Q Consensus 226 aG~V~Y~-~~gfleKN~D 242 (745)
.|...|- ...+++-|..
T Consensus 213 sg~t~~~ep~~~~~ln~~ 230 (771)
T TIGR01069 213 SGETFYIEPQAIVKLNNK 230 (771)
T ss_pred CCCEEEEEcHHHHHHHHH
Confidence 4544444 3335555654
No 221
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.15 E-value=3e+02 Score=22.88 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ 580 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~ 580 (745)
..+...|+.++..+..++..-+.++..|..+-......+...-.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~ 47 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE 47 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555555555555555444444444333
No 222
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.00 E-value=2.7e+02 Score=24.20 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKE---EENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le---~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
+...++.++....++...+.++...+ +.-..+++++.........+|.+++.+..+
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 44445555556666666655544322 122333344444444444444444444433
No 223
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=32.00 E-value=3.9e+02 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~ 602 (745)
.+..+..++..+++.+.+.|.+-..-...+..--+++.+....|+.++..
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~ 58 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVST 58 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444444544444444444555444433
No 224
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.82 E-value=4e+02 Score=31.09 Aligned_cols=20 Identities=30% Similarity=0.214 Sum_probs=10.8
Q ss_pred ccCCCccchhhhHHHHHHhh
Q 004543 645 RPMSAGLSVISRLAEEFDQR 664 (745)
Q Consensus 645 ~e~~~~~~~v~~l~~e~~~~ 664 (745)
..+++|-..--.|+.-|-.|
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~ 486 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWR 486 (562)
T ss_pred hhcChhHHHHHHHHHHHHHH
Confidence 34555555555566665543
No 225
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.79 E-value=5.8e+02 Score=31.07 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ---KMKSMEEV---WQKQMRS 595 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~---k~~~~ee~---l~~q~~~ 595 (745)
.+..++++++.|-..+-+...++++||-.|++++--+....-|+|. .++.++++ |..|+++
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666667889999999999988877777777764 45555555 4444443
No 226
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.64 E-value=2.4e+02 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 554 LREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 554 l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
...|.+|++.++.+....+.+.+.++.+-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 227
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.57 E-value=2.8e+02 Score=32.72 Aligned_cols=11 Identities=0% Similarity=0.009 Sum_probs=5.5
Q ss_pred hHHHHHHhhhc
Q 004543 656 RLAEEFDQRSQ 666 (745)
Q Consensus 656 ~l~~e~~~~~q 666 (745)
-++.-|..=.+
T Consensus 478 ~i~~~l~~i~~ 488 (555)
T TIGR03545 478 YILQVLKKIDV 488 (555)
T ss_pred HHHHHHhhCCe
Confidence 44455555555
No 228
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.35 E-value=4.1e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEE 559 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~ 559 (745)
.+.++++.++..+|.+.+..+.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~ 46 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQEN 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 229
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.30 E-value=1.2e+02 Score=32.39 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
.+.++.+||+.|++++.++..++.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777665544333
No 230
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=31.25 E-value=2.1e+02 Score=34.32 Aligned_cols=9 Identities=56% Similarity=0.730 Sum_probs=5.6
Q ss_pred cccchhhcC
Q 004543 181 LSLLDEEST 189 (745)
Q Consensus 181 l~lLdee~~ 189 (745)
+=||||-+.
T Consensus 170 lLLLDEPtn 178 (638)
T PRK10636 170 LLLLDEPTN 178 (638)
T ss_pred EEEEcCCCC
Confidence 557888443
No 231
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.16 E-value=4.5e+02 Score=30.58 Aligned_cols=58 Identities=24% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
++..-..++.+|...+..+.+++.++++....+++....+..-......+++.++-.+
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIal 389 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAL 389 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 3333344445555555555555555554444444444444444433344444443333
No 232
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.11 E-value=3e+02 Score=28.73 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004543 599 SLSIAK 604 (745)
Q Consensus 599 ~L~~a~ 604 (745)
.++..+
T Consensus 97 ~l~~l~ 102 (247)
T COG3879 97 RLEKLR 102 (247)
T ss_pred HHHHHH
Confidence 333333
No 233
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.07 E-value=1.8e+02 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQ 570 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~ 570 (745)
+.++++.+++++++.++++.+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 234
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.03 E-value=6.2e+02 Score=26.23 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
++++...+.+++.+-+.+..|++.|+...+.+..+..++...|..+.+++
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666666555554444
No 235
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=30.97 E-value=7.3e+02 Score=27.03 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 546 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 546 r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~ 602 (745)
.-...|.++..++++|...-++-+.+.....|-++-+.-+..=|.+|.+.|..+++.
T Consensus 34 ~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~ 90 (328)
T PF15369_consen 34 EQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSE 90 (328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334455666667766666655555555555555555555555566666666655544
No 236
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=30.96 E-value=1.2e+03 Score=29.67 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=7.5
Q ss_pred HHHHHHcCcCCcce
Q 004543 385 VAILHQFNILPEMY 398 (745)
Q Consensus 385 ~~ll~~~~~~~~~y 398 (745)
..++..++++++.|
T Consensus 123 ~~~l~~~~~~~~~~ 136 (1164)
T TIGR02169 123 HDFLAAAGIYPEGY 136 (1164)
T ss_pred HHHHHHcCCCcCcc
Confidence 34555556655554
No 237
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.90 E-value=5.4e+02 Score=25.51 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 004543 451 ALQSFIRGEKI 461 (745)
Q Consensus 451 ~iQs~~Rg~~a 461 (745)
..|...|-+.+
T Consensus 90 ~~~~~~~~fra 100 (192)
T PF05529_consen 90 EDQVLAKKFRA 100 (192)
T ss_pred hHHHHHHHHHH
Confidence 33433333333
No 238
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.85 E-value=4.4e+02 Score=24.44 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 561 NDILHQRLQQYESRWSEYEQKMKSMEEVWQ 590 (745)
Q Consensus 561 ~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~ 590 (745)
...|.++++.++.++..++.+...+.+.++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666655555544444443
No 239
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=30.75 E-value=2.4e+02 Score=28.41 Aligned_cols=6 Identities=50% Similarity=0.374 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004543 583 KSMEEV 588 (745)
Q Consensus 583 ~~~ee~ 588 (745)
.+++++
T Consensus 108 ~q~EEE 113 (190)
T PF06936_consen 108 KQEEEE 113 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 240
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.13 E-value=2.4e+02 Score=29.61 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
|.+........+.|..++|+++.....++..|+.+++.++....
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666665555544433
No 241
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.44 E-value=6.5e+02 Score=25.99 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhhhhhhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 500 MIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 500 ~IQs~~R~~~aRr~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e 579 (745)
..|..-+.+..-+.+..+......-+.....+=-.-.+....++-.+...++..+..++.....+.+....++..+..++
T Consensus 47 ~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le 126 (225)
T COG1842 47 LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALE 126 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCC
Q 004543 580 QKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVN 621 (745)
Q Consensus 580 ~k~~~~ee~l~~q~~~Lq~~L~~a~~sla~~~~~~~~~~s~~ 621 (745)
.++..++... ..+......++.+-..+....+.+++++
T Consensus 127 ~Ki~e~~~~~----~~l~ar~~~akA~~~v~~~~~~~s~~sa 164 (225)
T COG1842 127 QKIAELRAKK----EALKARKAAAKAQEKVNRSLGGGSSSSA 164 (225)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCchhh
No 242
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.86 E-value=5.8e+02 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 004543 293 ATKFKGQLFQLMQRLE 308 (745)
Q Consensus 293 ~~~f~~~L~~Lm~~L~ 308 (745)
..+|+..-..-|..|.
T Consensus 263 ~~~~~~~a~~~~~~~~ 278 (518)
T PF10212_consen 263 MLQYKKRAAAYMSSLK 278 (518)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3455655555666553
No 243
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.57 E-value=5.8e+02 Score=29.45 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004543 582 MKSMEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 582 ~~~~ee~l~~q~~~Lq~~L~~ 602 (745)
+..+-.-+++++...+..+..
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 334444466666666666543
No 244
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=28.40 E-value=60 Score=36.34 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=12.2
Q ss_pred chhhhhhhhhhhccccchh
Q 004543 423 LHGILRVQSCFRGHQARLC 441 (745)
Q Consensus 423 l~aa~~IQ~~~Rg~~~R~~ 441 (745)
++||+.||+|+|+|.+|..
T Consensus 17 ikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLE 35 (631)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666654
No 245
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.30 E-value=4.6e+02 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 564 LHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 564 l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
+.+.|+++.-+.+.+|+.+..+.+-.+.++..|+.+|
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333
No 246
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.25 E-value=6.1e+02 Score=25.53 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRL 568 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l 568 (745)
|+.++..++.++...+..+..|..++
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 247
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.18 E-value=6.3e+02 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYE 572 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e 572 (745)
+..+..+..++......+.....++..++..|+.++-.++
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444444445555555555555555553333
No 248
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.17 E-value=4e+02 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDIL 564 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l 564 (745)
....+-..+...+..++..+..|+..|
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555444
No 249
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.98 E-value=5.9e+02 Score=27.58 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVL 548 (745)
Q Consensus 536 ~~~~~~~Lq~r~~ 548 (745)
+...+.+++.++.
T Consensus 239 LlsqivdlQ~r~k 251 (306)
T PF04849_consen 239 LLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 250
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.72 E-value=9.4e+02 Score=27.28 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.2
Q ss_pred HHHhhh
Q 004543 478 IQRQIK 483 (745)
Q Consensus 478 IQ~~~R 483 (745)
|.+..|
T Consensus 121 L~A~~r 126 (420)
T COG4942 121 LAALQR 126 (420)
T ss_pred HHHHHh
Confidence 333333
No 251
>PRK12705 hypothetical protein; Provisional
Probab=27.65 E-value=1e+03 Score=27.75 Aligned_cols=8 Identities=0% Similarity=0.314 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 004543 585 MEEVWQKQ 592 (745)
Q Consensus 585 ~ee~l~~q 592 (745)
++++++.+
T Consensus 151 ~~~~~~~e 158 (508)
T PRK12705 151 LDAELEEE 158 (508)
T ss_pred HHHHHHHH
Confidence 33333333
No 252
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.41 E-value=7.6e+02 Score=26.10 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 570 QYESRWSEYEQKMKSMEEVWQKQMRSL 596 (745)
Q Consensus 570 ~~e~~~~e~e~k~~~~ee~l~~q~~~L 596 (745)
..++++...+.+++.+++....+...|
T Consensus 397 keeeklk~e~qkikeleek~~eeedal 423 (445)
T KOG2891|consen 397 KEEEKLKAEEQKIKELEEKIKEEEDAL 423 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555566666555554444
No 253
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.40 E-value=3.9e+02 Score=31.20 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
++..++...+....+++.++.++++|+..++.++...
T Consensus 340 vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 340 VLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555554443
No 254
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.39 E-value=4.2e+02 Score=24.16 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWS 576 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~ 576 (745)
+..++..+..+...+.++...+.++.+||+.|+-+.+.+.+++.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555556666666666666555555544444
No 255
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.36 E-value=4.3e+02 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQ 566 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~ 566 (745)
+.++..||..+..++..+++-+-|++.+..
T Consensus 119 E~ekq~lQ~ti~~~q~d~ke~etelE~~~s 148 (1265)
T KOG0976|consen 119 EMEKQKLQDTIQGAQDDKKENEIEIENLNS 148 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444444444444333333333333333
No 256
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=27.13 E-value=7.2e+02 Score=28.75 Aligned_cols=9 Identities=11% Similarity=-0.116 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 004543 497 SSIMIQSVI 505 (745)
Q Consensus 497 a~i~IQs~~ 505 (745)
+++.+|-.+
T Consensus 213 q~~s~~eel 221 (596)
T KOG4360|consen 213 QARSGQEEL 221 (596)
T ss_pred HHHHHHHHH
Confidence 444444433
No 257
>PHA02047 phage lambda Rz1-like protein
Probab=26.85 E-value=4.4e+02 Score=23.41 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 558 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 601 (745)
Q Consensus 558 e~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~ 601 (745)
.++.+.+..+|+.++.++..++.....++..-.++..++..+|.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666665555556655554
No 258
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=26.78 E-value=96 Score=35.61 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e 579 (745)
.+++.-|+.++.++.++.+.|..||+.|+++|..++.+...++
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3456667778888888999999999999999988877655544
No 259
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.77 E-value=6.5e+02 Score=25.11 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
....+.+|+..+....+....+.+.....+.-.+..+++..++..++
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kkl 125 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKL 125 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 33334444444444444433333333333333333333333343333
No 260
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=26.66 E-value=5.7e+02 Score=25.85 Aligned_cols=65 Identities=23% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 004543 537 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ----KMKSMEEVWQKQMRSLQSSLS 601 (745)
Q Consensus 537 ~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~----k~~~~ee~l~~q~~~Lq~~L~ 601 (745)
..+...+..+...++-+.++++..++.++..++..+.+-+|..+ +++...+-|.+-...|..+|.
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 261
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.62 E-value=4.3e+02 Score=30.39 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 004543 586 EEVWQKQMRSLQSS 599 (745)
Q Consensus 586 ee~l~~q~~~Lq~~ 599 (745)
||+|..++..|..+
T Consensus 413 EE~Lr~Kldtll~~ 426 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQ 426 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 262
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=7.3e+02 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 559 EENDILHQRLQQYESRWSEYEQKMKSMEE 587 (745)
Q Consensus 559 ~e~~~l~~~l~~~e~~~~e~e~k~~~~ee 587 (745)
++...++++++.++..+..+++++....+
T Consensus 93 qeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 93 QEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33333444444444444434333333333
No 263
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.19 E-value=5e+02 Score=33.24 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=20.3
Q ss_pred CceEEEeccceeEEeccchhhhh-----cccccHHHHHHHhhc
Q 004543 218 KSFTVSHYAGEVIYDTTGFLEKN-----RDLLHLDSIELLSSC 255 (745)
Q Consensus 218 ~~F~I~HyaG~V~Y~~~gfleKN-----~D~l~~~~~~ll~~S 255 (745)
++..+--|...+.-+.+|-+.-+ -|.++|++++.+..-
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 34444444444555555544333 466777777666543
No 264
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.12 E-value=5.8e+02 Score=24.33 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 583 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~ 583 (745)
++..+..++..+...+..++..+..+..+...|.+.++....++++++....
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555555555556666666666666666666666666666655433
No 265
>PF14282 FlxA: FlxA-like protein
Probab=26.07 E-value=2.1e+02 Score=25.73 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 551 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 605 (745)
Q Consensus 551 e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~~ 605 (745)
...+..|++.+..|.++|..+...-.--.+........++.|+..|+..+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.04 E-value=3.9e+02 Score=31.21 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004543 198 FANKLK 203 (745)
Q Consensus 198 f~~kl~ 203 (745)
+++.+.
T Consensus 43 ll~aI~ 48 (562)
T PHA02562 43 MLEALT 48 (562)
T ss_pred HHHHHH
Confidence 344433
No 267
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.68 E-value=3.5e+02 Score=32.46 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=5.6
Q ss_pred hcCcEEEEeC
Q 004543 8 LGNVSFTVID 17 (745)
Q Consensus 8 LGNi~F~~~~ 17 (745)
|-||.|....
T Consensus 17 l~~vs~~i~~ 26 (638)
T PRK10636 17 LDNATATINP 26 (638)
T ss_pred ecCcEEEECC
Confidence 4566666543
No 268
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.63 E-value=5e+02 Score=27.58 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.6
Q ss_pred cCCCCccchhhHHH
Q 004543 352 SGFPTRMSHQKFAR 365 (745)
Q Consensus 352 ~Gyp~r~~~~eF~~ 365 (745)
-|||--++...|-.
T Consensus 3 LGypr~iSmenFrt 16 (267)
T PF10234_consen 3 LGYPRLISMENFRT 16 (267)
T ss_pred CCCCCCCcHHHcCC
Confidence 58998888877753
No 269
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.43 E-value=1.1e+03 Score=29.85 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=9.9
Q ss_pred hHHHHhhHHHHHHHhhhc
Q 004543 705 KDYGSRLRETKVILNKLG 722 (745)
Q Consensus 705 k~~~~rl~~~~~~~~~~~ 722 (745)
+-|.+.|+.+|-.+....
T Consensus 395 ~~l~~ql~~aK~~~~~~~ 412 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEAS 412 (1174)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345556666666555443
No 270
>PRK00846 hypothetical protein; Provisional
Probab=25.38 E-value=4.3e+02 Score=22.54 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 545 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 545 ~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
.|+.++|.++.-.+.-+..|-+.+......+..+..++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333333333
No 271
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.30 E-value=4.6e+02 Score=29.81 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.8
Q ss_pred EeecCC
Q 004543 676 VEVKSG 681 (745)
Q Consensus 676 ~e~~~~ 681 (745)
.||-++
T Consensus 191 ~ev~~P 196 (425)
T PRK05431 191 TEVIPP 196 (425)
T ss_pred EEEecc
Confidence 455443
No 272
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=25.22 E-value=1.2e+03 Score=28.11 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 590 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~ 590 (745)
+.....+...|++.+..-...+.+++.+|..|+.++...-.+...|+-++..++.+++
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e 646 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELE 646 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777788889999999999999888888888888877777653
No 273
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.03 E-value=4.1e+02 Score=33.03 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEA-ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~-~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
..+++++|...+..+++ ++.++++..+++.+-+++....|+|--.+......+.+++++++-.++
T Consensus 369 lReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 369 LREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555332 455566655555555555555555544444455555555555554443
No 274
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.03 E-value=6.5e+02 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 570 QYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 570 ~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
..+.+..+++..+.....+|..+.++|+...
T Consensus 75 ~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 75 QAEEELLELEDQWRQERKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555544
No 275
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.72 E-value=7.1e+02 Score=24.86 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=9.2
Q ss_pred cCCcceeeccccccccc
Q 004543 393 ILPEMYQVGYTKLFFRA 409 (745)
Q Consensus 393 ~~~~~y~vG~tkVFlr~ 409 (745)
+||..|.-+ ...|++.
T Consensus 9 ~ppr~~~~~-~~~~~q~ 24 (189)
T PF10211_consen 9 LPPREWEED-GQLWIQF 24 (189)
T ss_pred CCchhhhcC-CeeeEee
Confidence 677777744 4444443
No 276
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.56 E-value=4.2e+02 Score=27.72 Aligned_cols=46 Identities=9% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 555 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 555 ~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
..++++...|..+.+.++.....+..........++.+++.|.+..
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444222223333333444454433
No 277
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.52 E-value=4.2e+02 Score=22.20 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 582 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~ 582 (745)
+...+..|......+.........-+..|+..+...+..+.++..++
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333344444444444444444444433333
No 278
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=24.38 E-value=2.3e+02 Score=29.33 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 560 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 602 (745)
Q Consensus 560 e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L~~ 602 (745)
....+..++..++.++..++.++...++.+.+|...|+..+..
T Consensus 194 ~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 194 RIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666667777777777777777777665543
No 279
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.30 E-value=6e+02 Score=29.70 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=3.3
Q ss_pred HHHHhhh
Q 004543 715 KVILNKL 721 (745)
Q Consensus 715 ~~~~~~~ 721 (745)
-|+|.||
T Consensus 255 p~elekl 261 (907)
T KOG2264|consen 255 PAELEKL 261 (907)
T ss_pred hHhhhhh
Confidence 3444454
No 280
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.25 E-value=4e+02 Score=30.17 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.6
Q ss_pred EeecCC
Q 004543 676 VEVKSG 681 (745)
Q Consensus 676 ~e~~~~ 681 (745)
.||.++
T Consensus 193 ~~v~~P 198 (418)
T TIGR00414 193 QEIYPP 198 (418)
T ss_pred EEEeCC
Confidence 444443
No 281
>PLN02320 seryl-tRNA synthetase
Probab=24.25 E-value=8.5e+02 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 531 DEVLVKASFLAELQRRVLKAEAALREKE 558 (745)
Q Consensus 531 ~~l~~~~~~~~~Lq~r~~~~e~~l~~le 558 (745)
+++..+..+..+++.++.++.++.....
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~s 120 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVA 120 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 282
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.13 E-value=6.3e+02 Score=24.08 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l~~q~~~Lq~~L 600 (745)
.+..++..+..|......+...+.+.+.....+.+..+..+..|+.++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444444433
No 283
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.86 E-value=4.8e+02 Score=25.81 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 554 LREKEEENDILHQRLQQYESRWSEY 578 (745)
Q Consensus 554 l~~le~e~~~l~~~l~~~e~~~~e~ 578 (745)
...+.++.++|++.+......+..|
T Consensus 94 ~~~l~~ri~eLe~~l~~kad~vvsY 118 (175)
T PRK13182 94 LNTITRRLDELERQLQQKADDVVSY 118 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3333333333333333333333333
No 284
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.77 E-value=1.6e+02 Score=23.73 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004543 559 EENDILHQRLQQYESRWSEYE 579 (745)
Q Consensus 559 ~e~~~l~~~l~~~e~~~~e~e 579 (745)
+.++.|+++|+..+.+....|
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae 52 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 285
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.62 E-value=6.9e+02 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004543 590 QKQMRSLQSSLSIAKKSL 607 (745)
Q Consensus 590 ~~q~~~Lq~~L~~a~~sl 607 (745)
++.+...+-.|.+|..++
T Consensus 81 ~~~L~~a~P~L~~A~~al 98 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEAL 98 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444433
No 286
>PRK14127 cell division protein GpsB; Provisional
Probab=23.46 E-value=2.3e+02 Score=25.87 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004543 553 ALREKEEENDILHQRLQQYESRW 575 (745)
Q Consensus 553 ~l~~le~e~~~l~~~l~~~e~~~ 575 (745)
....+..|+..|++++..++.++
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 287
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=23.29 E-value=2.9e+02 Score=21.40 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
.++..+..++.+|..|..++..+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555444444433
No 288
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=23.05 E-value=6.4e+02 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 004543 535 VKASFLAELQRRVLKAEAA--LREKEEENDILHQRLQQYESRW 575 (745)
Q Consensus 535 ~~~~~~~~Lq~r~~~~e~~--l~~le~e~~~l~~~l~~~e~~~ 575 (745)
.+-.++...+++....++. ...+......++.+|+..+..+
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 3333444444444444444433
No 289
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=4.9e+02 Score=27.20 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 533 VLVKASFLAELQRRVLKAEAALREKEEENDILHQ 566 (745)
Q Consensus 533 l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~ 566 (745)
++.+.+++..|++.+.+-.+.+-++...+..|+-
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4455666666666666666566555555555543
No 290
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.96 E-value=1.7e+03 Score=28.78 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=10.4
Q ss_pred HHHHHHHcCcCCcce
Q 004543 384 SVAILHQFNILPEMY 398 (745)
Q Consensus 384 ~~~ll~~~~~~~~~y 398 (745)
...++...|+.++.|
T Consensus 124 I~~l~~~~gi~~~~~ 138 (1163)
T COG1196 124 IQDLLADSGIGKESY 138 (1163)
T ss_pred HHHHHHhcCCCCCCC
Confidence 345677778877776
No 291
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.79 E-value=2.4e+02 Score=23.26 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004543 549 KAEAALREKEEENDILHQRL 568 (745)
Q Consensus 549 ~~e~~l~~le~e~~~l~~~l 568 (745)
+++.++..++.++..|+.++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333
No 292
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.54 E-value=1.1e+03 Score=26.35 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 004543 560 ENDILHQRLQQYE 572 (745)
Q Consensus 560 e~~~l~~~l~~~e 572 (745)
|...|+++|...+
T Consensus 325 Ei~nLKqElasme 337 (455)
T KOG3850|consen 325 EIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 293
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=9.8e+02 Score=25.66 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 541 AELQRRVLKAEAALREKEEENDILHQRLQQYES 573 (745)
Q Consensus 541 ~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~ 573 (745)
..|.....+++..+..+..+.....+++.....
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666655555544333
No 294
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.28 E-value=1.1e+03 Score=26.07 Aligned_cols=30 Identities=27% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 539 FLAELQRRVLKAEAALREKEEENDILHQRL 568 (745)
Q Consensus 539 ~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l 568 (745)
.+..++..+..++.++..++.+...++.++
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 295
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.25 E-value=3.6e+02 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 578 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~ 578 (745)
..+....+..++...+..+..+++....+++++.+.+..+.++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 296
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=22.20 E-value=1.2e+03 Score=26.68 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=22.3
Q ss_pred HHhhhHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHhh
Q 004543 479 QRQIKSRVARQKLKNIK--YSSIMIQSVIRGWLVRRCSG 515 (745)
Q Consensus 479 Q~~~R~~~~R~~~~~~~--~a~i~IQs~~R~~~aRr~~~ 515 (745)
++++--+..=.++.+.. .|+-++|-.|.=+.-.|.++
T Consensus 346 EKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 45555454444444433 37778999998776665553
No 297
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.19 E-value=6.9e+02 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=15.4
Q ss_pred CccchhhhHHHHHHhhhcccc
Q 004543 649 AGLSVISRLAEEFDQRSQVFG 669 (745)
Q Consensus 649 ~~~~~v~~l~~e~~~~~q~~~ 669 (745)
+++..+..+++|.+.+.+.|.
T Consensus 373 afLd~L~qf~~e~~~k~~~~~ 393 (447)
T KOG2751|consen 373 AFLDCLKQFADELEKKDTSFN 393 (447)
T ss_pred HHHHHHHHHHHHHHhcCcccC
Confidence 556677788888888877663
No 298
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.13 E-value=5.3e+02 Score=26.41 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 540 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 540 ~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
...++.....++.++..+++++..++.++..+.+....+..+.....+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666665555555444433
No 299
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.07 E-value=6.3e+02 Score=28.88 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=16.0
Q ss_pred hhhHHHhhccccccccC----CCChHHHHHHHHHHcCcC
Q 004543 360 HQKFARRYGFLLLESVA----SQDPLSVSVAILHQFNIL 394 (745)
Q Consensus 360 ~~eF~~Ry~~L~~~~~~----~~d~~~~~~~ll~~~~~~ 394 (745)
-.+|..=|+.|...-.| .....+-+..+|+.+..|
T Consensus 136 ~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YP 174 (622)
T COG5185 136 QKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYP 174 (622)
T ss_pred cccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCc
Confidence 34566655555433222 122233344566666544
No 300
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.07 E-value=5.2e+02 Score=22.36 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
.++..+...+..+...+..+|+.+..+..+|.++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455555666666666666666666665555544
No 301
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=8.4e+02 Score=25.51 Aligned_cols=14 Identities=0% Similarity=-0.145 Sum_probs=7.3
Q ss_pred ccccccceeEeecC
Q 004543 667 VFGDDAKFLVEVKS 680 (745)
Q Consensus 667 ~~~~~~~~~~e~~~ 680 (745)
.|+++...-+++-|
T Consensus 202 ~~~~~~~~~f~~~p 215 (250)
T PRK14474 202 HLIPGTDIHFVTSP 215 (250)
T ss_pred hcCCCCceeeecCc
Confidence 45555555555544
No 302
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.03 E-value=4.4e+02 Score=23.04 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 543 LQRRVLKAEAALREKEEENDILHQRLQQY 571 (745)
Q Consensus 543 Lq~r~~~~e~~l~~le~e~~~l~~~l~~~ 571 (745)
.+.++.+++.++..+.+|+..|+.++...
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 303
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.54 E-value=1.5e+02 Score=23.71 Aligned_cols=11 Identities=45% Similarity=0.425 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 004543 551 EAALREKEEEN 561 (745)
Q Consensus 551 e~~l~~le~e~ 561 (745)
+.+...++.||
T Consensus 27 ~~~n~~Le~EN 37 (59)
T PF01166_consen 27 EERNSQLEEEN 37 (59)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 304
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.29 E-value=5.6e+02 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=7.0
Q ss_pred hHHHhhhcCCCcccccchh
Q 004543 168 DCLNLFEKKPLGLLSLLDE 186 (745)
Q Consensus 168 ~~ldLie~kp~Gil~lLde 186 (745)
++.+++.. .||..-+|+
T Consensus 29 ~i~~~L~~--~gi~~Gi~~ 45 (451)
T PF03961_consen 29 EILEALRK--KGIVYGIDE 45 (451)
T ss_pred HHHHHHHH--CCCCcccCH
Confidence 33444433 244444443
No 305
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.26 E-value=1.9e+03 Score=28.46 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004543 532 EVLVKASFLAELQRRVL 548 (745)
Q Consensus 532 ~l~~~~~~~~~Lq~r~~ 548 (745)
++..+...+++|+.+..
T Consensus 1620 ~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 306
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.14 E-value=8.1e+02 Score=24.22 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004543 538 SFLAELQRRVLKAEAALREKEE 559 (745)
Q Consensus 538 ~~~~~Lq~r~~~~e~~l~~le~ 559 (745)
.....+..++.+++..+..+.+
T Consensus 92 ~~~~~l~~ri~eLe~~l~~kad 113 (175)
T PRK13182 92 AQLNTITRRLDELERQLQQKAD 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444443333
No 307
>PF14511 RE_EcoO109I: Type II restriction endonuclease EcoO109I; PDB: 1WTD_A 1WTE_A.
Probab=21.13 E-value=1.2e+02 Score=30.57 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=23.7
Q ss_pred ccccceeEeecCCcccCCCCCHHHHHHHHHhHHHHHh
Q 004543 669 GDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKK 705 (745)
Q Consensus 669 ~~~~~~~~e~~~~~~~~~~~~~~el~~lk~~f~~wkk 705 (745)
.|..+-+|++|||+- .-..+..++++..|-.|++
T Consensus 101 ~Dg~~~~~~iKSGpN---t~N~~qi~~~~~~Fk~~~~ 134 (200)
T PF14511_consen 101 RDGRRYICQIKSGPN---TINSDQIKKMKDHFKEAKN 134 (200)
T ss_dssp TTS-EEEEEEESSTT---S--HHHHHHHHHHHHHHHH
T ss_pred ECCeEEEEEEecCCC---cCCHHHHHHHHHHHHHHHH
Confidence 478899999999973 3345567888877777765
No 308
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.09 E-value=1.2e+03 Score=26.11 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHh--hhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 511 RRCSGDICLLKS--VESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 588 (745)
Q Consensus 511 Rr~~~~l~~~~r--~~~~~~~~~~l~~~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~ 588 (745)
+..++.+|.+-. ..++.....+-....+++.+........+.++.++..+..+.++++....+.-..+..+++.+.+.
T Consensus 80 ~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~q 159 (499)
T COG4372 80 RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQ 159 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004543 589 WQKQMRSLQSSLSIAKK 605 (745)
Q Consensus 589 l~~q~~~Lq~~L~~a~~ 605 (745)
-++-.++++.-++.-+.
T Consensus 160 r~ql~aq~qsl~a~~k~ 176 (499)
T COG4372 160 RRQLEAQAQSLQASQKQ 176 (499)
T ss_pred HHHHHHHHHHHHHHHHH
No 309
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.95 E-value=5.1e+02 Score=25.69 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 004543 591 KQMRSLQSSL 600 (745)
Q Consensus 591 ~q~~~Lq~~L 600 (745)
+++.+|+.++
T Consensus 160 ~~l~~l~~ei 169 (176)
T PF12999_consen 160 KKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 310
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.92 E-value=1.6e+02 Score=28.90 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004543 551 EAALREKEEENDILHQRL 568 (745)
Q Consensus 551 e~~l~~le~e~~~l~~~l 568 (745)
|.++...-|+++-|+.+|
T Consensus 6 EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 6 ESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 344444444444444444
No 311
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.82 E-value=1.2e+03 Score=26.33 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=10.5
Q ss_pred cchhhhHHHHHHhhhc
Q 004543 651 LSVISRLAEEFDQRSQ 666 (745)
Q Consensus 651 ~~~v~~l~~e~~~~~q 666 (745)
.+..+-|+-|.+..+|
T Consensus 448 ~~~~~Slaaeid~~sq 463 (502)
T KOG0982|consen 448 FSLFFSLAAEIDEMSQ 463 (502)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3455667777776666
No 312
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.62 E-value=8.2e+02 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 576 SEYEQKMKSMEEVWQKQMRSLQSSLSIAK 604 (745)
Q Consensus 576 ~e~e~k~~~~ee~l~~q~~~Lq~~L~~a~ 604 (745)
.+.+......+..++....+++.++..+-
T Consensus 64 ~~~e~~~~~v~~si~~~~~~~~~~~~~~~ 92 (169)
T PRK01919 64 TDFESAARDVENTIHDNLSEHESDLNDAW 92 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444455555555555555554433
No 313
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.42 E-value=6.1e+02 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 544 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE 587 (745)
Q Consensus 544 q~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee 587 (745)
+.-+.-++.++..++++.+.++.++....+....+..+..+..+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~ 61 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARD 61 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555554444333
No 314
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.03 E-value=1.9e+02 Score=24.53 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 004543 556 EKEEENDILHQRLQQY 571 (745)
Q Consensus 556 ~le~e~~~l~~~l~~~ 571 (745)
++.+||..|+++|+.+
T Consensus 4 ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 4 EIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 315
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=20.03 E-value=35 Score=39.28 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHH
Q 004543 574 RWSEYE 579 (745)
Q Consensus 574 ~~~e~e 579 (745)
++++-|
T Consensus 416 RLedSE 421 (495)
T PF12004_consen 416 RLEDSE 421 (495)
T ss_dssp ------
T ss_pred hhhhhH
Confidence 333333
No 316
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.02 E-value=9.3e+02 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004543 536 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 589 (745)
Q Consensus 536 ~~~~~~~Lq~r~~~~e~~l~~le~e~~~l~~~l~~~e~~~~e~e~k~~~~ee~l 589 (745)
+..+++=|+..+.++..++..+..|+-.|+.++..........+..+..+...+
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555566666666666666666666666666666555555555554443
Done!