Query 004544
Match_columns 745
No_of_seqs 343 out of 1463
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.9E-73 4.2E-78 581.6 18.1 205 161-368 1-222 (229)
2 PF01852 START: START domain; 99.7 1.3E-17 2.7E-22 166.3 7.9 189 166-361 1-191 (206)
3 KOG0483 Transcription factor H 99.7 8.1E-17 1.8E-21 162.5 7.3 113 25-145 49-164 (198)
4 smart00234 START in StAR and p 99.7 1.2E-15 2.6E-20 152.5 14.5 189 167-364 2-194 (206)
5 KOG0487 Transcription factor A 99.5 8E-15 1.7E-19 156.1 3.9 67 25-95 234-300 (308)
6 KOG0489 Transcription factor z 99.5 4.8E-15 1E-19 156.1 2.0 64 24-91 157-220 (261)
7 KOG0842 Transcription factor t 99.5 2E-14 4.4E-19 153.0 5.9 67 25-95 152-218 (307)
8 KOG0843 Transcription factor E 99.5 1.7E-14 3.6E-19 141.8 4.8 63 25-91 101-163 (197)
9 KOG0488 Transcription factor B 99.5 1.9E-14 4E-19 154.7 4.4 64 24-91 170-233 (309)
10 KOG0850 Transcription factor D 99.4 2.5E-14 5.4E-19 145.3 2.8 66 23-92 119-184 (245)
11 KOG0484 Transcription factor P 99.4 4.7E-14 1E-18 127.6 1.6 63 23-89 14-76 (125)
12 KOG0492 Transcription factor M 99.4 2.3E-13 4.9E-18 136.3 5.7 67 21-91 139-205 (246)
13 PF00046 Homeobox: Homeobox do 99.4 1.4E-13 3.1E-18 111.7 1.9 57 27-87 1-57 (57)
14 PF08670 MEKHLA: MEKHLA domain 99.4 3.1E-13 6.7E-18 131.2 4.2 56 688-743 1-56 (148)
15 KOG0848 Transcription factor C 99.4 1.7E-13 3.6E-18 141.5 2.0 58 30-91 203-260 (317)
16 KOG2251 Homeobox transcription 99.3 6.6E-13 1.4E-17 134.5 4.6 65 23-91 34-98 (228)
17 KOG0485 Transcription factor N 99.3 5.3E-13 1.2E-17 134.4 3.4 62 25-90 103-164 (268)
18 KOG0494 Transcription factor C 99.3 8.5E-13 1.8E-17 135.7 4.2 58 30-91 145-202 (332)
19 KOG0493 Transcription factor E 99.3 7.5E-13 1.6E-17 136.2 3.2 60 24-87 244-303 (342)
20 cd00177 START Lipid-binding ST 99.2 3.8E-11 8.2E-16 117.0 10.2 165 170-347 2-169 (193)
21 COG5576 Homeodomain-containing 99.2 1.4E-11 3E-16 120.8 5.3 65 23-91 48-112 (156)
22 smart00389 HOX Homeodomain. DN 99.2 7E-12 1.5E-16 101.0 1.9 55 28-86 2-56 (56)
23 cd00086 homeodomain Homeodomai 99.2 1.1E-11 2.4E-16 100.4 2.5 56 28-87 2-57 (59)
24 TIGR01565 homeo_ZF_HD homeobox 99.2 3.6E-11 7.8E-16 99.6 5.3 52 27-82 2-57 (58)
25 KOG0847 Transcription factor, 99.1 1.8E-11 3.9E-16 123.5 1.8 65 23-91 164-228 (288)
26 KOG4577 Transcription factor L 99.1 1E-10 2.2E-15 122.1 6.5 64 24-91 165-228 (383)
27 KOG0844 Transcription factor E 99.1 3.4E-11 7.3E-16 126.4 2.6 65 27-95 182-246 (408)
28 KOG0491 Transcription factor B 99.1 7.4E-12 1.6E-16 121.7 -2.1 65 25-93 99-163 (194)
29 KOG3802 Transcription factor O 99.1 7.4E-11 1.6E-15 128.5 4.8 61 25-89 293-353 (398)
30 KOG0486 Transcription factor P 99.1 1.1E-10 2.4E-15 123.3 4.5 64 25-92 111-174 (351)
31 cd08904 START_STARD6-like Lipi 99.0 6.2E-09 1.3E-13 106.4 12.9 170 165-348 4-180 (204)
32 cd08867 START_STARD4_5_6-like 98.9 7.2E-09 1.6E-13 105.0 12.7 169 164-348 3-182 (206)
33 cd08871 START_STARD10-like Lip 98.9 1E-08 2.3E-13 105.0 11.5 166 168-349 8-178 (222)
34 cd08868 START_STARD1_3_like Ch 98.8 2.6E-08 5.7E-13 101.1 12.1 170 164-349 6-183 (208)
35 KOG0490 Transcription factor, 98.8 4.8E-09 1E-13 106.8 4.1 61 25-89 59-119 (235)
36 cd08903 START_STARD5-like Lipi 98.7 7.7E-08 1.7E-12 98.3 11.4 169 165-349 4-183 (208)
37 cd08905 START_STARD1-like Chol 98.6 9.7E-08 2.1E-12 97.6 9.1 170 165-349 7-184 (209)
38 cd08909 START_STARD13-like C-t 98.6 1.6E-07 3.4E-12 96.3 10.2 128 211-349 52-181 (205)
39 cd08869 START_RhoGAP C-termina 98.6 1.9E-07 4E-12 94.7 10.7 166 169-349 4-173 (197)
40 KOG1168 Transcription factor A 98.5 7.3E-08 1.6E-12 101.1 5.3 67 19-89 302-368 (385)
41 PLN00188 enhanced disease resi 98.5 2.4E-07 5.1E-12 108.2 8.4 129 211-347 227-365 (719)
42 KOG0849 Transcription factor P 98.4 9.7E-08 2.1E-12 105.1 3.2 62 24-89 174-235 (354)
43 cd08906 START_STARD3-like Chol 98.4 2.6E-06 5.7E-11 87.3 10.9 171 164-349 6-184 (209)
44 cd08902 START_STARD4-like Lipi 98.2 5E-06 1.1E-10 84.9 9.7 167 165-345 4-176 (202)
45 cd08908 START_STARD12-like C-t 98.1 1.1E-05 2.4E-10 82.8 9.6 167 167-349 10-180 (204)
46 KOG0775 Transcription factor S 98.1 2.3E-06 4.9E-11 89.8 3.6 50 33-86 183-232 (304)
47 cd08874 START_STARD9-like C-te 98.0 1.4E-05 3E-10 82.1 8.3 127 214-349 48-182 (205)
48 cd08907 START_STARD8-like C-te 97.8 0.00015 3.3E-09 74.4 11.9 168 167-349 10-181 (205)
49 cd08872 START_STARD11-like Cer 97.7 0.00021 4.5E-09 74.9 10.8 165 166-343 6-197 (235)
50 KOG0774 Transcription factor P 97.7 2.5E-05 5.4E-10 81.5 2.8 59 25-87 187-248 (334)
51 cd08910 START_STARD2-like Lipi 97.6 0.00015 3.2E-09 74.4 7.9 152 182-349 23-182 (207)
52 cd08873 START_STARD14_15-like 97.6 0.00016 3.5E-09 75.8 7.7 121 212-341 78-203 (235)
53 cd08870 START_STARD2_7-like Li 97.4 0.0013 2.8E-08 67.3 11.2 169 170-349 6-184 (209)
54 cd08876 START_1 Uncharacterize 97.4 0.00043 9.2E-09 69.1 7.4 135 211-355 41-179 (195)
55 PF05920 Homeobox_KN: Homeobox 97.3 3.9E-05 8.3E-10 59.3 -1.1 34 47-84 7-40 (40)
56 cd08914 START_STARD15-like Lip 97.2 0.0016 3.4E-08 68.5 9.5 131 212-354 79-215 (236)
57 cd08877 START_2 Uncharacterize 97.2 0.0018 3.9E-08 66.3 9.5 175 165-349 4-190 (215)
58 KOG0490 Transcription factor, 97.1 0.00031 6.7E-09 71.7 3.4 62 25-90 152-213 (235)
59 KOG2252 CCAAT displacement pro 97.1 0.00038 8.1E-09 79.5 3.6 64 19-86 413-476 (558)
60 cd08913 START_STARD14-like Lip 97.1 0.0042 9.2E-08 65.5 11.2 122 214-349 84-214 (240)
61 cd08911 START_STARD7-like Lipi 97.1 0.0012 2.6E-08 67.6 7.0 129 211-349 45-182 (207)
62 KOG1146 Homeobox protein [Gene 95.4 0.0081 1.8E-07 74.6 2.4 63 25-91 902-964 (1406)
63 cd08904 START_STARD6-like Lipi 95.2 0.9 1.9E-05 47.0 16.3 130 404-586 20-158 (204)
64 cd08869 START_RhoGAP C-termina 94.4 1.5 3.2E-05 44.7 15.3 57 404-476 17-73 (197)
65 cd08907 START_STARD8-like C-te 93.8 7.6 0.00017 40.5 19.0 58 403-476 24-81 (205)
66 cd08871 START_STARD10-like Lip 93.7 1.1 2.5E-05 46.1 13.1 57 404-476 21-79 (222)
67 KOG0773 Transcription factor M 92.4 0.093 2E-06 57.6 3.1 57 27-87 240-299 (342)
68 PRK09413 IS2 repressor TnpA; R 92.3 0.18 3.8E-06 47.6 4.4 95 28-134 8-102 (121)
69 cd08874 START_STARD9-like C-te 92.1 0.98 2.1E-05 46.7 10.0 56 403-476 19-76 (205)
70 cd00177 START Lipid-binding ST 91.7 3.1 6.6E-05 40.5 12.5 126 406-585 15-148 (193)
71 cd08877 START_2 Uncharacterize 91.4 11 0.00024 38.6 16.8 72 385-476 4-77 (215)
72 cd08864 SRPBCC_DUF3074 DUF3074 91.2 0.25 5.4E-06 51.2 4.4 111 233-349 65-184 (208)
73 PF11569 Homez: Homeodomain le 90.6 0.055 1.2E-06 45.0 -0.8 42 37-82 9-50 (56)
74 PF00170 bZIP_1: bZIP transcri 90.3 1.2 2.6E-05 37.5 7.0 45 82-126 19-63 (64)
75 KOG2761 START domain-containin 89.2 0.76 1.6E-05 48.1 5.9 110 221-339 64-183 (219)
76 cd08868 START_STARD1_3_like Ch 87.9 29 0.00062 35.4 16.4 57 403-476 21-80 (208)
77 cd08875 START_ArGLABRA2_like C 86.9 3.2 7E-05 43.9 9.0 164 384-586 3-181 (229)
78 cd08909 START_STARD13-like C-t 86.8 11 0.00023 39.3 12.6 55 406-476 27-81 (205)
79 KOG4005 Transcription factor X 86.5 1.9 4.1E-05 45.5 6.9 58 78-135 81-143 (292)
80 smart00234 START in StAR and p 85.6 14 0.0003 37.1 12.5 132 405-587 18-158 (206)
81 cd08913 START_STARD14-like Lip 84.6 9.9 0.00021 40.5 11.4 55 403-476 56-112 (240)
82 smart00338 BRLZ basic region l 82.1 5.4 0.00012 33.6 6.6 35 100-134 30-64 (65)
83 cd08902 START_STARD4-like Lipi 81.7 72 0.0016 33.4 18.4 57 403-476 20-78 (202)
84 cd08876 START_1 Uncharacterize 80.1 3.4 7.4E-05 41.2 5.7 61 399-476 9-72 (195)
85 cd08873 START_STARD14_15-like 79.0 3 6.5E-05 44.2 5.0 54 404-476 53-108 (235)
86 smart00340 HALZ homeobox assoc 78.7 3.6 7.7E-05 32.6 4.0 28 98-125 7-34 (44)
87 PF02183 HALZ: Homeobox associ 78.2 6.8 0.00015 31.4 5.6 39 96-134 5-43 (45)
88 cd08906 START_STARD3-like Chol 78.1 89 0.0019 32.3 17.4 71 387-476 8-81 (209)
89 cd08908 START_STARD12-like C-t 77.9 93 0.002 32.4 16.0 55 406-476 27-81 (204)
90 cd08870 START_STARD2_7-like Li 75.4 6 0.00013 40.6 5.9 58 405-476 21-82 (209)
91 TIGR00219 mreC rod shape-deter 74.2 5.6 0.00012 43.2 5.6 36 100-135 70-109 (283)
92 KOG3623 Homeobox transcription 73.1 1.7 3.8E-05 52.0 1.5 48 38-89 568-615 (1007)
93 cd08914 START_STARD15-like Lip 71.8 6.1 0.00013 42.0 5.1 55 403-476 53-109 (236)
94 cd08903 START_STARD5-like Lipi 71.5 6.8 0.00015 40.3 5.3 56 404-476 20-79 (208)
95 PF01852 START: START domain; 71.4 43 0.00092 33.4 10.9 148 388-585 2-156 (206)
96 cd08910 START_STARD2-like Lipi 71.1 8.4 0.00018 39.7 5.9 65 396-476 13-81 (207)
97 PRK13922 rod shape-determining 70.4 7.9 0.00017 41.4 5.6 38 98-135 71-111 (276)
98 PF06005 DUF904: Protein of un 69.2 12 0.00025 32.9 5.4 34 100-133 22-55 (72)
99 KOG4571 Activating transcripti 69.2 11 0.00024 41.1 6.3 31 101-131 253-283 (294)
100 KOG4196 bZIP transcription fac 67.9 29 0.00063 33.8 8.2 86 30-135 21-106 (135)
101 PF04218 CENP-B_N: CENP-B N-te 67.7 3.3 7.2E-05 33.8 1.7 47 27-82 1-47 (53)
102 PF02183 HALZ: Homeobox associ 67.2 9.5 0.00021 30.5 4.1 36 101-136 3-38 (45)
103 cd08911 START_STARD7-like Lipi 66.1 9.3 0.0002 39.2 5.0 57 404-476 19-77 (207)
104 PF06156 DUF972: Protein of un 63.2 20 0.00042 33.8 6.0 39 98-136 17-55 (107)
105 smart00338 BRLZ basic region l 62.6 44 0.00095 28.0 7.6 45 82-126 19-63 (65)
106 PF07716 bZIP_2: Basic region 62.5 23 0.0005 28.9 5.6 21 113-133 28-48 (54)
107 KOG4343 bZIP transcription fac 61.9 18 0.00039 42.5 6.5 31 106-136 305-335 (655)
108 KOG3119 Basic region leucine z 61.7 16 0.00035 39.4 6.0 22 113-134 225-246 (269)
109 PRK13169 DNA replication intia 58.9 26 0.00056 33.2 6.0 39 98-136 17-55 (110)
110 PF00170 bZIP_1: bZIP transcri 58.9 43 0.00092 28.1 6.8 36 98-133 28-63 (64)
111 KOG4343 bZIP transcription fac 57.0 17 0.00036 42.7 5.2 40 91-130 304-343 (655)
112 KOG3119 Basic region leucine z 56.5 28 0.00061 37.6 6.7 36 100-135 219-254 (269)
113 cd08872 START_STARD11-like Cer 56.3 34 0.00074 36.1 7.2 64 398-476 18-84 (235)
114 COG4026 Uncharacterized protei 54.2 46 0.00099 35.4 7.4 48 90-137 143-190 (290)
115 KOG0709 CREB/ATF family transc 53.7 30 0.00064 40.1 6.5 92 31-137 219-313 (472)
116 KOG4196 bZIP transcription fac 52.7 54 0.0012 32.1 7.1 41 83-123 68-108 (135)
117 COG3074 Uncharacterized protei 51.8 39 0.00085 29.7 5.4 42 93-134 22-63 (79)
118 PRK15422 septal ring assembly 51.7 45 0.00098 29.9 5.9 43 92-134 21-63 (79)
119 PRK00888 ftsB cell division pr 51.1 32 0.0007 32.1 5.3 45 73-117 16-62 (105)
120 PF06005 DUF904: Protein of un 50.7 60 0.0013 28.5 6.6 43 91-133 20-62 (72)
121 PF07407 Seadorna_VP6: Seadorn 50.3 22 0.00048 39.5 4.6 30 560-589 337-376 (420)
122 PF01166 TSC22: TSC-22/dip/bun 50.3 21 0.00046 30.2 3.5 32 103-134 14-45 (59)
123 cd08905 START_STARD1-like Chol 49.7 3.1E+02 0.0067 28.2 16.6 73 385-476 6-81 (209)
124 KOG4005 Transcription factor X 46.2 45 0.00097 35.7 5.9 45 89-133 104-148 (292)
125 PRK10884 SH3 domain-containing 46.2 65 0.0014 33.7 7.2 39 96-134 132-170 (206)
126 PF07716 bZIP_2: Basic region 45.3 1.4E+02 0.0031 24.2 7.7 27 106-132 28-54 (54)
127 TIGR03752 conj_TIGR03752 integ 45.0 65 0.0014 37.7 7.5 25 89-113 73-97 (472)
128 cd05018 CoxG Carbon monoxide d 43.5 80 0.0017 28.9 6.8 108 216-343 6-113 (144)
129 COG1792 MreC Cell shape-determ 43.2 42 0.0009 36.6 5.5 37 99-135 69-108 (284)
130 KOG4571 Activating transcripti 43.1 61 0.0013 35.6 6.6 43 82-124 241-283 (294)
131 cd08867 START_STARD4_5_6-like 41.9 68 0.0015 32.6 6.6 67 387-476 9-79 (206)
132 PF15058 Speriolin_N: Sperioli 40.7 43 0.00093 34.7 4.7 37 100-137 9-45 (200)
133 PHA03155 hypothetical protein; 40.0 30 0.00064 33.0 3.2 24 112-135 10-33 (115)
134 TIGR02894 DNA_bind_RsfA transc 39.8 71 0.0015 32.3 6.0 30 103-132 104-133 (161)
135 PF05812 Herpes_BLRF2: Herpesv 39.3 32 0.00069 33.1 3.3 26 112-137 5-30 (118)
136 cd07821 PYR_PYL_RCAR_like Pyra 39.2 1.6E+02 0.0035 26.5 8.0 35 216-250 6-40 (140)
137 PF14197 Cep57_CLD_2: Centroso 38.7 1.1E+02 0.0025 26.6 6.4 33 102-134 25-64 (69)
138 PHA03162 hypothetical protein; 38.7 31 0.00068 33.7 3.2 24 112-135 15-38 (135)
139 PF04977 DivIC: Septum formati 38.0 51 0.0011 28.0 4.2 28 108-135 22-49 (80)
140 PF12808 Mto2_bdg: Micro-tubul 37.6 49 0.0011 27.5 3.7 22 114-135 26-47 (52)
141 PF08172 CASP_C: CASP C termin 37.3 89 0.0019 33.6 6.7 42 94-135 91-132 (248)
142 PRK00888 ftsB cell division pr 36.7 49 0.0011 30.9 4.2 30 106-135 30-59 (105)
143 PF14197 Cep57_CLD_2: Centroso 36.6 1.3E+02 0.0029 26.1 6.5 23 108-130 45-67 (69)
144 PRK10884 SH3 domain-containing 36.0 95 0.002 32.5 6.5 31 105-135 134-164 (206)
145 KOG1962 B-cell receptor-associ 35.9 92 0.002 33.0 6.4 22 114-135 190-211 (216)
146 PLN00188 enhanced disease resi 34.3 2.5E+02 0.0053 34.8 10.3 97 456-587 236-342 (719)
147 cd08860 TcmN_ARO-CYC_like N-te 33.8 1.5E+02 0.0033 28.7 7.3 107 215-343 5-113 (146)
148 PF12711 Kinesin-relat_1: Kine 33.8 76 0.0016 29.0 4.7 34 103-136 24-63 (86)
149 TIGR02449 conserved hypothetic 32.7 1.5E+02 0.0032 25.8 6.1 33 101-133 12-44 (65)
150 cd07819 SRPBCC_2 Ligand-bindin 32.0 2.6E+02 0.0056 25.4 8.2 108 215-343 6-113 (140)
151 PRK13729 conjugal transfer pil 31.7 1.2E+02 0.0026 35.6 7.0 46 90-135 77-122 (475)
152 PF10226 DUF2216: Uncharacteri 31.7 1.5E+02 0.0032 30.9 6.8 32 80-112 47-78 (195)
153 PF07407 Seadorna_VP6: Seadorn 30.0 64 0.0014 36.0 4.2 25 91-115 34-58 (420)
154 PF15035 Rootletin: Ciliary ro 29.6 1.4E+02 0.0031 30.6 6.5 45 90-134 75-119 (182)
155 TIGR02209 ftsL_broad cell divi 29.5 1E+02 0.0023 26.8 4.8 28 108-135 29-56 (85)
156 PF10224 DUF2205: Predicted co 28.8 2.2E+02 0.0047 25.7 6.7 42 94-135 21-62 (80)
157 KOG4797 Transcriptional regula 28.7 98 0.0021 29.5 4.6 31 101-131 65-95 (123)
158 COG4467 Regulator of replicati 28.6 1.6E+02 0.0034 28.2 5.9 37 99-135 18-54 (114)
159 cd07813 COQ10p_like Coenzyme Q 27.8 1.7E+02 0.0036 27.2 6.2 106 215-343 3-108 (138)
160 PF06156 DUF972: Protein of un 27.6 1.2E+02 0.0027 28.5 5.2 35 101-135 13-47 (107)
161 TIGR03752 conj_TIGR03752 integ 26.2 1.4E+02 0.0031 35.0 6.3 20 691-710 425-444 (472)
162 PRK10724 hypothetical protein; 26.1 2.6E+02 0.0057 27.7 7.5 107 214-343 18-124 (158)
163 PF07558 Shugoshin_N: Shugoshi 25.8 54 0.0012 26.3 2.1 36 98-133 9-44 (46)
164 KOG4403 Cell surface glycoprot 25.4 1.1E+02 0.0024 35.4 5.2 13 75-87 229-244 (575)
165 cd08861 OtcD1_ARO-CYC_like N-t 25.4 2.2E+02 0.0048 26.2 6.6 32 216-247 4-37 (142)
166 TIGR02894 DNA_bind_RsfA transc 25.1 2.1E+02 0.0046 29.1 6.5 42 93-134 101-142 (161)
167 KOG0288 WD40 repeat protein Ti 24.0 2.4E+02 0.0051 32.7 7.4 46 90-135 28-73 (459)
168 PRK14872 rod shape-determining 23.8 1.3E+02 0.0029 33.8 5.4 38 93-134 61-98 (337)
169 PF14662 CCDC155: Coiled-coil 23.6 1.9E+02 0.0042 30.1 6.1 39 96-134 81-119 (193)
170 PF04999 FtsL: Cell division p 23.5 1.4E+02 0.003 26.9 4.6 32 106-137 38-69 (97)
171 PF06637 PV-1: PV-1 protein (P 23.0 6.3E+02 0.014 29.2 10.3 29 106-134 352-380 (442)
172 KOG2761 START domain-containin 22.9 44 0.00095 35.3 1.4 59 402-476 25-85 (219)
173 PF13815 Dzip-like_N: Iguana/D 22.0 2.6E+02 0.0056 26.4 6.3 38 96-133 80-117 (118)
174 KOG3755 SATB1 matrix attachmen 21.9 20 0.00044 42.6 -1.4 64 24-89 689-758 (769)
175 PF04880 NUDE_C: NUDE protein, 21.9 1.2E+02 0.0027 30.8 4.3 21 113-133 27-47 (166)
176 PRK13169 DNA replication intia 21.4 1.9E+02 0.0042 27.5 5.2 35 101-135 13-47 (110)
177 PF14645 Chibby: Chibby family 21.2 2.5E+02 0.0055 26.8 6.0 8 75-82 51-58 (116)
178 PF05529 Bap31: B-cell recepto 21.0 2.3E+02 0.0051 28.7 6.2 31 104-134 155-185 (192)
179 PF04967 HTH_10: HTH DNA bindi 20.9 1E+02 0.0022 25.5 2.9 36 33-72 1-38 (53)
180 PF00424 REV: REV protein (ant 20.3 1.3E+02 0.0027 27.9 3.6 37 38-92 14-50 (91)
181 PF01527 HTH_Tnp_1: Transposas 20.1 24 0.00051 29.8 -1.0 43 28-78 2-44 (76)
182 PF06210 DUF1003: Protein of u 20.1 3E+02 0.0066 26.0 6.2 47 79-126 57-103 (108)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.9e-73 Score=581.59 Aligned_cols=205 Identities=34% Similarity=0.596 Sum_probs=187.4
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcceEecCCCCC---CCCccccccc------cCCCcceeeceeeEEEeChhHHHHHhc
Q 004544 161 PAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKP---GPDSVGIFAI------SQSCSGVAARACGLVSLEPTKIAEILK 231 (745)
Q Consensus 161 ~~~l~~lA~~am~Ell~~a~~~~plWi~~~g~k~---g~~~~~~~~~------~~~~~~eASR~~glV~m~~~~LVe~lm 231 (745)
++++++||++||+||++||++++|+|++++|+|+ ++|.++..++ ..||++|||||||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 4689999999999999999999999999999977 7787754332 236999999999999999999999999
Q ss_pred CccchhhhCCcc----eEeeeecCCC----ccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCC
Q 004544 232 DRPSWFRDCRSL----EVFTMFPAGN----AGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAG 303 (745)
Q Consensus 232 D~~~W~~~f~~i----~vl~~~~~G~----~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~ 303 (745)
|+++|.++||++ +|+.++++|+ ||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 8999999996 7899999999999999999999999999999999999999999998753
Q ss_pred CCCCCccccccccccCcceeeeecCCCccEEEEEEeeeccccCccccccccccchHHHHHhhhhh
Q 004544 304 PNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIA 368 (745)
Q Consensus 304 ~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~lyRpL~~Sg~afA~r~~~a 368 (745)
.++.+.|+||||+|||||||||+|||||||||||+|||++.+|.+||+++.||+||++++|++
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a 222 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVA 222 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHH
Confidence 334457899999999999999999999999999999999999999999999999997777765
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.71 E-value=1.3e-17 Score=166.27 Aligned_cols=189 Identities=26% Similarity=0.368 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhHHHHHhcCcc-chhhhCCcce
Q 004544 166 SIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRP-SWFRDCRSLE 244 (745)
Q Consensus 166 ~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD~~-~W~~~f~~i~ 244 (745)
++|++++.+++++++.++..|....+.+++...+.....+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999997532333333333333333577889999999999999999999988 9999999999
Q ss_pred EeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCC-ccccccccccCccee
Q 004544 245 VFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPAS-AAQFVRAEMLPSGCL 323 (745)
Q Consensus 245 vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~-~~~~~r~~rlPSGcl 323 (745)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+.+|++... .++ ...++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~----~~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQ----YPPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTT----SSTT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccc----ccccccCcceeeeeeEeEE
Confidence 99999875 455556677788889999 9999999999999999999999998643 233 457899999999999
Q ss_pred eeecCCCccEEEEEEeeeccccCccccccccccchHHH
Q 004544 324 IRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 361 (745)
Q Consensus 324 Iq~~~nG~SkVtwVeH~e~d~~~v~~lyRpL~~Sg~af 361 (745)
|++.++|.|+||+|-|++..-+...-+++.++.+...-
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~ 191 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPN 191 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHH
Confidence 99999999999999999999988888888888777654
No 3
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.66 E-value=8.1e-17 Score=162.47 Aligned_cols=113 Identities=34% Similarity=0.515 Sum_probs=98.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHHHhhHHHHHh
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAM 104 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~~~n~~L~ae 104 (745)
...+|+.|+|.+|+..||..|+...+..+.+|.+||++| ||.||||+|||||||+|||.++.+. +.+.|+.+
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE~----d~~~Lk~~ 120 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLEK----DYESLKRQ 120 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhhh----hHHHHHHH
Confidence 345677899999999999999999999999999999999 9999999999999999999987764 45679999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCc---CCCCCC
Q 004544 105 NKLLMEENDRLQKQVSQLVCENGYMKQQLRTAPAT---TDASCD 145 (745)
Q Consensus 105 n~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~~~~---~~~s~~ 145 (745)
.+.++.++++|+.+++.|+.+-..++.+.++.... .+++|+
T Consensus 121 ~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 121 LESLRSENDRLQSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 99999999999999999999988888877764322 455555
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.66 E-value=1.2e-15 Score=152.48 Aligned_cols=189 Identities=28% Similarity=0.445 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhH-HHHHhcCc---cchhhhCCc
Q 004544 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTK-IAEILKDR---PSWFRDCRS 242 (745)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 242 (745)
.|++++.|+++++...+..|....+.+.|..++.... ..+..+.+-|+.++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 4788999999999999999999765455555543321 122457899999999999987 66788786 789999999
Q ss_pred ceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccCcce
Q 004544 243 LEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (745)
Q Consensus 243 i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (745)
.++|+.+..+. .++|.-+..|-++++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887542 2333222333213566999999999999999999999999853 344456899999999999
Q ss_pred eeeecCCCccEEEEEEeeeccccCccccccccccchHHHHHh
Q 004544 323 LIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQR 364 (745)
Q Consensus 323 lIq~~~nG~SkVtwVeH~e~d~~~v~~lyRpL~~Sg~afA~r 364 (745)
+|+++++|.|+|||+.|+|..-+..+-+.+.++.++.....+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHH
Confidence 999999999999999999999987677888888777765443
No 5
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.50 E-value=8e-15 Score=156.06 Aligned_cols=67 Identities=33% Similarity=0.480 Sum_probs=60.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 95 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~ 95 (745)
..||||.-||..|+.+||+.|..|.|.+.+.|.||++.| ||++|||||||||||+|+||..++.+++
T Consensus 234 ~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 234 RGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 457888999999999999999999999999999999999 9999999999999999999866544443
No 6
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.50 E-value=4.8e-15 Score=156.07 Aligned_cols=64 Identities=28% Similarity=0.425 Sum_probs=59.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
+..||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.++.
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhcc
Confidence 4568889999999999999999999999999999999999 999999999999999999985543
No 7
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.49 E-value=2e-14 Score=152.95 Aligned_cols=67 Identities=30% Similarity=0.524 Sum_probs=60.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 95 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~ 95 (745)
++||+|.-||..|+.+||+.|+..+|.+..+|++||..| +|++.||||||||||-|.||++....+.
T Consensus 152 ~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~~ 218 (307)
T KOG0842|consen 152 KKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKALE 218 (307)
T ss_pred cccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhhh
Confidence 456667779999999999999999999999999999999 9999999999999999999977654433
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.49 E-value=1.7e-14 Score=141.84 Aligned_cols=63 Identities=29% Similarity=0.450 Sum_probs=59.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
+.+|.||.||.+|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHH
Confidence 457889999999999999999999999999999999999 999999999999999999986654
No 9
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.48 E-value=1.9e-14 Score=154.72 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=60.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
++.|+.|+.||..|+.+||+.|+..+|.+...|.+||++| ||+..|||+||||||+|||+..+.
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 4667779999999999999999999999999999999999 999999999999999999996655
No 10
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.45 E-value=2.5e-14 Score=145.26 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=61.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHH
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (745)
Q Consensus 23 ~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~ 92 (745)
+++-||.||.|+.-|++.|.+.|++++|.-..+|.+||..| ||+..||||||||||.|.||.+++.
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~k~g 184 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLKKQG 184 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHHhcC
Confidence 45668889999999999999999999999999999999999 9999999999999999999866643
No 11
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.41 E-value=4.7e-14 Score=127.59 Aligned_cols=63 Identities=25% Similarity=0.547 Sum_probs=59.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 23 ~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
..++||-|+.||..|+.+||+.|.+.+||+.-.|++||.++ .|++..|+|||||||+|.|++.
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHHH
Confidence 34778889999999999999999999999999999999999 9999999999999999988743
No 12
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.40 E-value=2.3e-13 Score=136.26 Aligned_cols=67 Identities=33% Similarity=0.511 Sum_probs=61.2
Q ss_pred CccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 21 NKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 21 ~~~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
.|++..|+.|+-||.+|+..||+-|++.+|.+..+|.+++..| .|++.||||||||||+|.||.++.
T Consensus 139 rKhk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 139 RKHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHHH
Confidence 3456678889999999999999999999999999999999999 999999999999999999985553
No 13
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.37 E-value=1.4e-13 Score=111.75 Aligned_cols=57 Identities=42% Similarity=0.723 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHH
Q 004544 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (745)
Q Consensus 27 rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Kr 87 (745)
|++|++||.+|+..||..|..++||+..++.+||.++ ||++.||+.||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 5788999999999999999999999999999999999 99999999999999999885
No 14
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=99.37 E-value=3.1e-13 Score=131.19 Aligned_cols=56 Identities=39% Similarity=0.539 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhccccccccccccCCCCchHHHHhhhcCCCceeeeccCCccccc
Q 004544 688 PEALTLAHWICQSYSYHLGAELLRSDSVGGDSVLKNLWQHSDAILCCSLKVPLQFH 743 (745)
Q Consensus 688 ~e~~~l~~~i~~sy~~~~g~~l~~~~~~~~~~~~k~~w~~~dai~cc~~k~~p~~~ 743 (745)
||++.|++||++|||.++|.+|+.++.++.+.++|.||||+||||||++|+.|+|-
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~ 56 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFI 56 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEE
Confidence 89999999999999999999999998888889999999999999999999999994
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.36 E-value=1.7e-13 Score=141.54 Aligned_cols=58 Identities=29% Similarity=0.521 Sum_probs=54.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 30 Rtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
|..||..|+-+||+.|..++|.+..++.|||.-| ||++|||||||||||+|+||.++.
T Consensus 203 RvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~nKK 260 (317)
T KOG0848|consen 203 RVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDNKK 260 (317)
T ss_pred eEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHHHH
Confidence 6679999999999999999999999999999999 999999999999999999885443
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.34 E-value=6.6e-13 Score=134.47 Aligned_cols=65 Identities=23% Similarity=0.533 Sum_probs=60.8
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 23 ~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
.+++||.||+||..|+++||.+|.+..|||...|++||.+| +|.+.+|||||+|||+|+|+++..
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~q 98 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQQ 98 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhhh
Confidence 35778999999999999999999999999999999999999 999999999999999999986554
No 17
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.33 E-value=5.3e-13 Score=134.37 Aligned_cols=62 Identities=27% Similarity=0.353 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke 90 (745)
.+||.|+.|+..|+-.||..|+...|.+..+|..||++| .|++.|||+||||||.|||++-.
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHHHh
Confidence 556678889999999999999999999999999999999 99999999999999999998443
No 18
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.32 E-value=8.5e-13 Score=135.70 Aligned_cols=58 Identities=29% Similarity=0.560 Sum_probs=55.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 30 Rtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
|+.||..|+++||+.|++.+|||...|+-||-++ .|.+..|+|||||||+||||+.+.
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 7789999999999999999999999999999999 999999999999999999986654
No 19
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.31 E-value=7.5e-13 Score=136.17 Aligned_cols=60 Identities=33% Similarity=0.554 Sum_probs=57.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Kr 87 (745)
+..+|.|+.||.+|++.|+..|+++.|.++.+|++||.+| +|.+.|||+||||+|+|.||
T Consensus 244 ~eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 244 KEEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred chhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 3567889999999999999999999999999999999999 99999999999999999887
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.23 E-value=3.8e-11 Score=116.97 Aligned_cols=165 Identities=23% Similarity=0.372 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhHHHHHhcC---ccchhhhCCcceEe
Q 004544 170 ETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKD---RPSWFRDCRSLEVF 246 (745)
Q Consensus 170 ~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f~~i~vl 246 (745)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| +.+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667888887766 679876321 122222111 1122347889999999999999999999 77888888888888
Q ss_pred eeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccCcceeeee
Q 004544 247 TMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRP 326 (745)
Q Consensus 247 ~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 326 (745)
..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+..|+|.. ..|....++|++.+++|++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887653 5678888899999 999999999999999999999999999863 2233347899999999999999
Q ss_pred cCCCccEEEEEEeeeccccCc
Q 004544 327 CDGGGSIIHIVDHLNLEAWSV 347 (745)
Q Consensus 327 ~~nG~SkVtwVeH~e~d~~~v 347 (745)
+++|.|+||++-|+|..-+..
T Consensus 149 ~~~~~~~vt~~~~~D~~g~iP 169 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGSIP 169 (193)
T ss_pred CCCCCEEEEEEEeeCCCCCcc
Confidence 999999999999999886543
No 21
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.20 E-value=1.4e-11 Score=120.83 Aligned_cols=65 Identities=37% Similarity=0.602 Sum_probs=60.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 23 ~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
...++++|+|.|.+|+..|++.|..||||+...|.+|+..| ||+++-|++||||||++.|+....
T Consensus 48 s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 48 SSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred CCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhccc
Confidence 34678899999999999999999999999999999999999 999999999999999998875543
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.18 E-value=7e-12 Score=100.96 Aligned_cols=55 Identities=40% Similarity=0.686 Sum_probs=51.7
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHH
Q 004544 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (745)
Q Consensus 28 rkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~K 86 (745)
+.|++++.+|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 556789999999999999999999999999999999 9999999999999998753
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.17 E-value=1.1e-11 Score=100.42 Aligned_cols=56 Identities=41% Similarity=0.751 Sum_probs=53.3
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHH
Q 004544 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (745)
Q Consensus 28 rkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Kr 87 (745)
+++..++.+|+..||..|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999 99999999999999999775
No 24
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.16 E-value=3.6e-11 Score=99.58 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=50.3
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhcCcccCCCCceEEeccccch
Q 004544 27 NGKYVRYTAEQVEALERVYSECPK----PSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (745)
Q Consensus 27 rrkRtr~T~~Ql~~LE~~F~~~p~----Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRR 82 (745)
+|.|+.||++|++.||..|..++| |+...|.+||.++ ||++++|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999965
No 25
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=1.8e-11 Score=123.51 Aligned_cols=65 Identities=31% Similarity=0.488 Sum_probs=58.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 23 ~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
.+.++..|.+|+..|+..||..|+..+|+-..+|.+||..+ |+.+.||||||||||+|||||...
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 34555667789999999999999999999999999999999 999999999999999999997643
No 26
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.10 E-value=1e-10 Score=122.08 Aligned_cols=64 Identities=36% Similarity=0.623 Sum_probs=59.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
.-.+|+|+.+|+.|++.|+..|+..|+|....|++|+.+. ||..|.|+|||||||+|+|+.++.
T Consensus 165 ~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 165 ASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred cccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHHHHhhhhh
Confidence 3457899999999999999999999999999999999999 999999999999999999996654
No 27
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.09 E-value=3.4e-11 Score=126.35 Aligned_cols=65 Identities=32% Similarity=0.451 Sum_probs=58.6
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHH
Q 004544 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 95 (745)
Q Consensus 27 rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~ 95 (745)
||=|+.||.+||..||+.|.+..|.+..+|.|||..| ||.+..|||||||||+|.|+++-.....
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQRlamaWP 246 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQRLAMAWP 246 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhhhhccCC
Confidence 5667889999999999999999999999999999999 9999999999999999999866554433
No 28
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.09 E-value=7.4e-12 Score=121.66 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=59.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASR 93 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~ 93 (745)
..++-|+.|+..|+..||+.|+..+|.+..+|.|||..| +|+++|||.||||||+|.||.+++..
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 345668899999999999999999999999999999999 99999999999999999998776654
No 29
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.08 E-value=7.4e-11 Score=128.49 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=57.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
++||||+.++...+..||++|.+|++|+..++.+||.+| +|+...|+|||+|||.|+||-.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeeccccccccCC
Confidence 568889999999999999999999999999999999999 9999999999999999998833
No 30
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.05 E-value=1.1e-10 Score=123.32 Aligned_cols=64 Identities=22% Similarity=0.481 Sum_probs=59.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~ 92 (745)
++||.|+.||.+|+++||..|+++.||+...|++||... +|++..|+|||.|||+|||++..+.
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhhH
Confidence 567778889999999999999999999999999999999 9999999999999999999976653
No 31
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.96 E-value=6.2e-09 Score=106.44 Aligned_cols=170 Identities=17% Similarity=0.236 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEEEeChhHHHHHhcCcc---chhhhC
Q 004544 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDRP---SWFRDC 240 (745)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~~f 240 (745)
..|+++|++|+++.-. ..-.|-.- |.+.. +.+... .+.+.+---|..|+|..++.+|+|.+-|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999987 44788774 22321 222222 234455678999999999999999998865 455555
Q ss_pred CcceEeeeecCCCccHHHHHHHhhh-ccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccC
Q 004544 241 RSLEVFTMFPAGNAGTIELLYTQAY-APTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLP 319 (745)
Q Consensus 241 ~~i~vl~~~~~G~~G~lqLm~aE~~-v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 319 (745)
-..++|+.+.... .+.|..++ .+-++|-+|||..+||.++.++|.++|+..|++ .|..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~----Hp~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVE----YPQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecc----cCCCCCCCCcEEEeeec
Confidence 5556666654321 23333332 345789999999999999999999999999986 35567777999999999
Q ss_pred cceeeeecCCC--ccEEEEEEeeeccccCcc
Q 004544 320 SGCLIRPCDGG--GSIIHIVDHLNLEAWSVP 348 (745)
Q Consensus 320 SGclIq~~~nG--~SkVtwVeH~e~d~~~v~ 348 (745)
+||+|+|.+++ +|++||+-++|+.-| +|
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP 180 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN-LS 180 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC-CC
Confidence 99999999874 899999999877633 44
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.95 E-value=7.2e-09 Score=105.03 Aligned_cols=169 Identities=22% Similarity=0.324 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEEEeChhHHHHHhcC-----ccchh
Q 004544 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKD-----RPSWF 237 (745)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD-----~~~W~ 237 (745)
+-.++++|.+|++.... .+..|-.... +.| +.++.. ...+.+-.-|..|.+..++.++++.|+| +.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 45789999999999987 4477987532 122 222211 1222233469999999999999999998 57899
Q ss_pred hhCCcceEeeeecCCCccHHHHHHHhhhcc---ccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccc
Q 004544 238 RDCRSLEVFTMFPAGNAGTIELLYTQAYAP---TTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVR 314 (745)
Q Consensus 238 ~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~---SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r 314 (745)
..|-..++|+.+..+ + .++|. ..+ .++|..|||..+||.++.++|.++|+-.|++. |..|+...++|
T Consensus 78 ~~~~~~~~le~id~~---~-~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR 147 (206)
T cd08867 78 KSLKHYEVLEKISED---L-CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVR 147 (206)
T ss_pred ccccceEEEEEeCCC---e-EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEE
Confidence 999888888887532 2 22332 233 35799999999999999999999999999874 33556668999
Q ss_pred ccccCcceeeeecC--CCccEEEEEEeeeccccCcc
Q 004544 315 AEMLPSGCLIRPCD--GGGSIIHIVDHLNLEAWSVP 348 (745)
Q Consensus 315 ~~rlPSGclIq~~~--nG~SkVtwVeH~e~d~~~v~ 348 (745)
+...++|++|++.+ ++.|+|||+-|++..- .+|
T Consensus 148 ~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP 182 (206)
T cd08867 148 GYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP 182 (206)
T ss_pred EEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc
Confidence 99999999999986 5789999999999763 344
No 33
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.89 E-value=1e-08 Score=105.03 Aligned_cols=166 Identities=20% Similarity=0.323 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEE-EeChhHHHHHhcC---ccchhhhCCc
Q 004544 168 AEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLV-SLEPTKIAEILKD---RPSWFRDCRS 242 (745)
Q Consensus 168 A~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~~ 242 (745)
-++.+++|+.++..++ -|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|..
T Consensus 8 ~~~~~~~~~~~~~~~~-~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDSTD-GWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCCC-CcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 3688999999997544 7987532 222 322211 122333567887765 5788899999999 5889988888
Q ss_pred ceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccCcce
Q 004544 243 LEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (745)
Q Consensus 243 i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (745)
.++|..+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++. +..|+...++|.....+|+
T Consensus 83 ~~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~ 152 (222)
T cd08871 83 SFDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGY 152 (222)
T ss_pred eEEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEE
Confidence 8888876532 3567777888888 8999999999998876 888999999874 3345556899999999999
Q ss_pred eeeecCCCccEEEEEEeeeccccCccc
Q 004544 323 LIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 323 lIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
+|++.++|.|+|||+-|++..-+ +|.
T Consensus 153 ~i~p~~~~~t~vt~~~~~Dp~G~-IP~ 178 (222)
T cd08871 153 LIRPTGPKGCTLTYVTQNDPKGS-LPK 178 (222)
T ss_pred EEEECCCCCEEEEEEEecCCCCC-cCH
Confidence 99999999999999999998755 554
No 34
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.83 E-value=2.6e-08 Score=101.10 Aligned_cols=170 Identities=20% Similarity=0.299 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCcccccccc-CCCcceeeceeeEEEeChhHHHHHh-cC---ccchhh
Q 004544 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAIS-QSCSGVAARACGLVSLEPTKIAEIL-KD---RPSWFR 238 (745)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~-~~~~~eASR~~glV~m~~~~LVe~l-mD---~~~W~~ 238 (745)
...++++|+++++.+.. ++.|-.....+.| +.++-.. .+ .+-.-|+.|+|...+.++.+.| .| +.+|-.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~---i~i~~r~~~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~ 79 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWG---DVVYSRNVPG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNP 79 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCC---CEEEEEEcCC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecC
Confidence 35789999999999964 5589875321112 2222111 12 3356899999999999987654 44 588999
Q ss_pred hCCcceEeeeecCCCccHHHHHHHhhhcc-ccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccc
Q 004544 239 DCRSLEVFTMFPAGNAGTIELLYTQAYAP-TTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEM 317 (745)
Q Consensus 239 ~f~~i~vl~~~~~G~~G~lqLm~aE~~v~-SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~r 317 (745)
.|-..++|..+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..
T Consensus 80 ~~~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~ 150 (208)
T cd08868 80 TVLECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGEN 150 (208)
T ss_pred cccceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99988888887532 22334222222 2589999999999999866 679999999763 33455668999999
Q ss_pred cCcceeeeecCC--CccEEEEEEeeeccccCccc
Q 004544 318 LPSGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 318 lPSGclIq~~~n--G~SkVtwVeH~e~d~~~v~~ 349 (745)
+++|++|+++++ +.|+|||+-|+|..-+ +|.
T Consensus 151 ~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~ 183 (208)
T cd08868 151 GPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ 183 (208)
T ss_pred cccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc
Confidence 999999999987 6899999999987744 554
No 35
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.76 E-value=4.8e-09 Score=106.81 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
.+++.|+.|+..|+++||+.|...+||+...|+.|+..+ ++++..|++||||||+|+++..
T Consensus 59 ~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 59 SKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred cccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 557788999999999999999999999999999999999 9999999999999999999754
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.72 E-value=7.7e-08 Score=98.29 Aligned_cols=169 Identities=19% Similarity=0.303 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEEEeChhHHHHHhcCc-----cchhh
Q 004544 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDR-----PSWFR 238 (745)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~-----~~W~~ 238 (745)
.+++++|+.+++.+-+ .+..|-..... .| +.++.. .....+-.-|.-|+|..++.+|++.|+|. .+|-.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999874 66789875321 12 222211 11222223789999999999999999965 69999
Q ss_pred hCCcceEeeeecCCCccHHHHHHHhhhcccc---ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccc
Q 004544 239 DCRSLEVFTMFPAGNAGTIELLYTQAYAPTT---LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRA 315 (745)
Q Consensus 239 ~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SP---Lvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 315 (745)
.|-..++|+.+... + .+.|. ..|.| +|.+|||-.+|+.++.++|.++|.-.|.. .+..|+...|+|+
T Consensus 79 ~~~~~~vle~id~~---~-~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~----h~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDD---V-SVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE----HPLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCC---E-EEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc----CCCCCCCCCeEEE
Confidence 99999999888732 1 11221 34555 69999999999999999999887776765 3445666789999
Q ss_pred cccCcceeeeecCC--CccEEEEEEeeeccccCccc
Q 004544 316 EMLPSGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 316 ~rlPSGclIq~~~n--G~SkVtwVeH~e~d~~~v~~ 349 (745)
+..|+|++|.+.++ +.|+|+|+-|+|.. ..+|.
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~ 183 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQ 183 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCH
Confidence 99999999999964 58999999888764 34663
No 37
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.63 E-value=9.7e-08 Score=97.63 Aligned_cols=170 Identities=18% Similarity=0.241 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhHHHHHhc-C---ccchhhhC
Q 004544 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILK-D---RPSWFRDC 240 (745)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lm-D---~~~W~~~f 240 (745)
..++++|++|++++.+ .+..|-.....+.| +.++.......+-+-|.-++|..++.+|++.|. | ..+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~ 82 (209)
T cd08905 7 IKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNV 82 (209)
T ss_pred HHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccc
Confidence 5789999999999986 55689874211222 222221111123677888999999999995555 4 37899888
Q ss_pred CcceEeeeecCCCccHHHHHHHhhhcccc--ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccccccc
Q 004544 241 RSLEVFTMFPAGNAGTIELLYTQAYAPTT--LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEML 318 (745)
Q Consensus 241 ~~i~vl~~~~~G~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 318 (745)
..+++|..+... + -++|. ..+|.| +|..|||-.+|+.++.+++. +++..|.+. +..|+...++|++..
T Consensus 83 ~~~~vl~~id~~---~-~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~~ 152 (209)
T cd08905 83 KEVKILQRIGKD---T-LITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAENG 152 (209)
T ss_pred hHHHHHhhcCCC---c-eEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEee
Confidence 887777766532 1 23443 556665 79999999999999886554 566677553 345566789999999
Q ss_pred CcceeeeecCC--CccEEEEEEeeeccccCccc
Q 004544 319 PSGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 319 PSGclIq~~~n--G~SkVtwVeH~e~d~~~v~~ 349 (745)
+.|++|+++++ |.|+|||+-|+|..-+ +|.
T Consensus 153 ~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~ 184 (209)
T cd08905 153 PTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK 184 (209)
T ss_pred ccEEEEEECCCCCCceEEEEEEeecCCCC-CCH
Confidence 99999999988 9999999999987655 664
No 38
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.62 E-value=1.6e-07 Score=96.32 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=97.4
Q ss_pred eeeceeeEEEeChhHH-HHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeee-eccCC
Q 004544 211 VAARACGLVSLEPTKI-AEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTT-TLDNG 288 (745)
Q Consensus 211 eASR~~glV~m~~~~L-Ve~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYck-ql~~G 288 (745)
-+-|...-|.-.+..+ ..++.++..|-..|-..++++.+... .++.|--+.-|-|+ |.|||+.+|+-+ .+++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4667766776666666 45778899999999887787776632 22233333345565 999999999976 46799
Q ss_pred cEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeeccccCccc
Q 004544 289 SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 289 ~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
..+|+..|++... .|+ ..++|+..+-+||+|+|+++|.|+||++-|+|..- .+|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG-~~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKG-HSPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCC-CChH
Confidence 9999999998643 233 37899999999999999999999999999998653 3554
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.62 E-value=1.9e-07 Score=94.68 Aligned_cols=166 Identities=24% Similarity=0.323 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhcCCCcceEecCCCCCCCCccccc--cccCCCcceeeceeeEEEeChhHHHHHhcC-ccchhhhCCcceE
Q 004544 169 EETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIF--AISQSCSGVAARACGLVSLEPTKIAEILKD-RPSWFRDCRSLEV 245 (745)
Q Consensus 169 ~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~--~~~~~~~~eASR~~glV~m~~~~LVe~lmD-~~~W~~~f~~i~v 245 (745)
+.+.++||+-+...+.-|.-.... .| +.+. +...++...+=|..+.|.-.+.++++.|+| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~-~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSS-DH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecC-Cc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 567889999999878999875321 22 3222 222344456779999999889999875554 5678888888888
Q ss_pred eeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-ccCCcEEEEEeecCCCCCCCCCCCccccccccccCcceee
Q 004544 246 FTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLI 324 (745)
Q Consensus 246 l~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckq-l~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclI 324 (745)
|..+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.-.|++... ..|+ .++|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8887642 2345555666766 59999999999884 78899999999986321 1222 78999999999999
Q ss_pred eecCCCccEEEEEEeeeccccCccc
Q 004544 325 RPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 325 q~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
+|.++|.|+||++-|+|.- ..+|.
T Consensus 150 ~p~~~~~t~vty~~~~Dp~-G~iP~ 173 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLR-GRSPE 173 (197)
T ss_pred EECCCCCeEEEEEEEECCC-CCCCc
Confidence 9999999999999999864 24554
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.54 E-value=7.3e-08 Score=101.12 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=61.3
Q ss_pred CCCccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 19 SINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 19 ~~~~~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
+...++.++|||+.+.....+.||.+|...|.|+.+....+|.+| .|....|+|||+|.|.|.||.+
T Consensus 302 ~l~~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 302 ELLPGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred hccCccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 444467888999999999999999999999999999999999999 9999999999999999988854
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.50 E-value=2.4e-07 Score=108.23 Aligned_cols=129 Identities=24% Similarity=0.314 Sum_probs=105.8
Q ss_pred eeeceeeEEEeChhHHHHHhcCcc----chhhhCCcceEeeeecCCCccHHHHHHHhhh--ccccccCCceeeEEeeeee
Q 004544 211 VAARACGLVSLEPTKIAEILKDRP----SWFRDCRSLEVFTMFPAGNAGTIELLYTQAY--APTTLAPARDFWTLRYTTT 284 (745)
Q Consensus 211 eASR~~glV~m~~~~LVe~lmD~~----~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~--v~SPLvp~Re~~fLRYckq 284 (745)
-+=|+.|+|-..+.+|.|.+|+.+ +|=..|-..++|..+.. ...++|.-++ .....+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~----htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDG----HTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecC----CeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 677999999999999999999666 88888888888887742 3334443332 3445677799999999999
Q ss_pred ccCCcEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecC--C--CccEEEEEEeeeccccCc
Q 004544 285 LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCD--G--GGSIIHIVDHLNLEAWSV 347 (745)
Q Consensus 285 l~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~--n--G~SkVtwVeH~e~d~~~v 347 (745)
-+||+++|+=+|+.- +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+++.-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999873 4556777999999999999999964 4 379999999999999875
No 42
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.44 E-value=9.7e-08 Score=105.10 Aligned_cols=62 Identities=27% Similarity=0.579 Sum_probs=57.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
+..+|+|+.|++.|++.||+.|+.++||+...|++||+++ ++.+..|++||+|||+|+++..
T Consensus 174 ~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 174 RGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 4556778999999999999999999999999999999999 9999999999999999988743
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.35 E-value=2.6e-06 Score=87.35 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhHHH-HHhcCc---cchhhh
Q 004544 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIA-EILKDR---PSWFRD 239 (745)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD~---~~W~~~ 239 (745)
....+++||++|.++... +..|--....+.| +.++-......+-+=|.-+.|...+..|. +.|.|. .+|-.-
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 356789999999999764 4479853111223 22221111112234477888888888885 677665 577777
Q ss_pred CCcceEeeeecCCCccHHHHHHHhhhcccc--ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccc
Q 004544 240 CRSLEVFTMFPAGNAGTIELLYTQAYAPTT--LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEM 317 (745)
Q Consensus 240 f~~i~vl~~~~~G~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~r 317 (745)
+...++|..+... . -+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++. +..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~---~-~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~----~~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDN---T-LVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH----SHKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCC---c-EEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec----CCCCCCCCeEEEee
Confidence 7777777776642 1 2234 4445543 6899999999999998888 6778888764 24566678999999
Q ss_pred cCcceeeeec--CCCccEEEEEEeeeccccCccc
Q 004544 318 LPSGCLIRPC--DGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 318 lPSGclIq~~--~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
.++|++|++. .+|.|+|||+-|+|..- .+|.
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~ 184 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPR 184 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCCH
Confidence 9999999985 57799999999998764 4553
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.23 E-value=5e-06 Score=84.89 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEEeChhHHHHHhcC---ccchhhhCC
Q 004544 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKD---RPSWFRDCR 241 (745)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f~ 241 (745)
..+|.++-+++++--+.++-.|-.-... +.-++-..| +.-+.|---|.-|+|--.+..|++.+-+ +.+|=+.+-
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~--~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKS--KDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeC--CCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 4677777788888666689999764221 111111111 2234556678889999999999999999 559999887
Q ss_pred cceEeeeecCCCccHHHHH-HHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccCc
Q 004544 242 SLEVFTMFPAGNAGTIELL-YTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPS 320 (745)
Q Consensus 242 ~i~vl~~~~~G~~G~lqLm-~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPS 320 (745)
..++|+.|..+ + .++ |.=.-.+-++|-+|||.-+||+++.++|. ..|-||++.. .+|+ .|+|++..|.
T Consensus 81 ~~~Iie~Id~d---t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p~ 149 (202)
T cd08902 81 SMDIIEEFEEN---C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHPC 149 (202)
T ss_pred heeHhhhhcCC---c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeeccccc
Confidence 77666655432 1 111 22223566789999999999999999998 7778887742 2333 8999999999
Q ss_pred ceeeeecCCC--ccEEEEEEeeecccc
Q 004544 321 GCLIRPCDGG--GSIIHIVDHLNLEAW 345 (745)
Q Consensus 321 GclIq~~~nG--~SkVtwVeH~e~d~~ 345 (745)
||++.|.+|| .|+.||+-++|+.-|
T Consensus 150 g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 150 GWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred EEEEEECCCCCCceEEEEEEEecCCCC
Confidence 9999999998 677889999887744
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.12 E-value=1.1e-05 Score=82.75 Aligned_cols=167 Identities=21% Similarity=0.313 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCcccccc--ccCCCcceeeceeeEEEeChhHHHH-HhcCccchhhhCCcc
Q 004544 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFA--ISQSCSGVAARACGLVSLEPTKIAE-ILKDRPSWFRDCRSL 243 (745)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~--~~~~~~~eASR~~glV~m~~~~LVe-~lmD~~~W~~~f~~i 243 (745)
.-++.+++|++.|..--=-|+.... .+...+.. .+.|..--.-|....+.-.+.+|+. ++-|+.+|-..|-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 3456777777777654445655321 11111111 1122223456777777777777774 455577899999998
Q ss_pred eEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeee-eccCCcEEEEEeecCCCCCCCCCCCccccccccccCcce
Q 004544 244 EVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTT-TLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (745)
Q Consensus 244 ~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYck-ql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (745)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++-. ..| . .++|++.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~----~~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHD----RAP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcc----cCC-c-CceEEEEEeeEE
Confidence 8988877432 356666778888 7999999997765 58999999999998853 223 2 368999999999
Q ss_pred eeeecCCCccEEEEEEeeeccccCccc
Q 004544 323 LIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 323 lIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
+|+|+++|.|+||.+-|+|-- ..+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPg-G~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLR-GHMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCC-CCCcH
Confidence 999999999999999999753 24554
No 46
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.07 E-value=2.3e-06 Score=89.82 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHH
Q 004544 33 YTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (745)
Q Consensus 33 ~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~K 86 (745)
|-..-...|.++|..++||++.++.+||+.. ||+..||-.||+|||+|.|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhh
Confidence 4455567999999999999999999999999 9999999999999999987
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.03 E-value=1.4e-05 Score=82.11 Aligned_cols=127 Identities=21% Similarity=0.295 Sum_probs=92.8
Q ss_pred ceeeEEEeChhHHHHHhcCc---cchhhhCCcceEeeeecCCCccHHHHHHHhhhccccc-cCCceeeEEeeeeeccCCc
Q 004544 214 RACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTL-APARDFWTLRYTTTLDNGS 289 (745)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPL-vp~Re~~fLRYckql~~G~ 289 (745)
|.-+.|...+.+|.+.|.|. .+|-.++...++|+.+... ..++|..+..|=|+ ++.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d----~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTED----ICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCC----eEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 34567888899999999885 5788899999998866542 12344433333333 3999999999554544444
Q ss_pred EEEEEeecCCCCCCCCCCCcc-ccccccccCcceeeeec---CCCccEEEEEEeeeccccCccc
Q 004544 290 LVVCERSLSGSGAGPNPASAA-QFVRAEMLPSGCLIRPC---DGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 290 waVvDvSld~~~~~~~~~~~~-~~~r~~rlPSGclIq~~---~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
+|.=.|++. +..|+.. .++|.+.+++|++|+|+ ++|.|+||.+-|+|.--..+|.
T Consensus 124 -vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 -VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred -EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 466677764 3345454 79999999999999999 9999999999999976445663
No 48
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.85 E-value=0.00015 Score=74.35 Aligned_cols=168 Identities=22% Similarity=0.338 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccccCCCcceeeceeeEEE-eChhHHHHHhcCccchhhhCCcceE
Q 004544 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVS-LEPTKIAEILKDRPSWFRDCRSLEV 245 (745)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD~~~W~~~f~~i~v 245 (745)
.-++.+++|++.++...--|+...+ +.+-+.. ....+.|..---=|.+.-|. ..+.-|-++|.|+..|=+.+-...+
T Consensus 10 ~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~~ 87 (205)
T cd08907 10 YLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQV 87 (205)
T ss_pred HHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhhh
Confidence 4567889999999877788987532 1121211 00011111111112222222 3455678999999999998865555
Q ss_pred eeeecCCCccHHHHHHHhhhcc--ccccCCceeeEEeeee-eccCCcEEEEEeecCCCCCCCCCCCccccccccccCcce
Q 004544 246 FTMFPAGNAGTIELLYTQAYAP--TTLAPARDFWTLRYTT-TLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (745)
Q Consensus 246 l~~~~~G~~G~lqLm~aE~~v~--SPLvp~Re~~fLRYck-ql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (745)
|+.+.-.+. - - -|+. .+.+|.|||.+||.-+ .++.|.-+|+.+|++-.. .|+... +|+--+=|||
T Consensus 88 Ie~Ld~n~d-I---~---yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgY 155 (205)
T cd08907 88 IEALENNTE-V---Y---HYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQY 155 (205)
T ss_pred heeecCCCE-E---E---EEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccE
Confidence 555542211 0 0 0222 2568999999999865 578889999999998532 333334 8999999999
Q ss_pred eeeecCCCccEEEEEEeeeccccCccc
Q 004544 323 LIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 323 lIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
||++++.|.|+||-+-|++..-+ .|+
T Consensus 156 lIep~g~g~s~ltyi~rvD~rG~-~P~ 181 (205)
T cd08907 156 LIEPCGMGRSRLTHICRADLRGR-SPD 181 (205)
T ss_pred EEEECCCCCeEEEEEEEeCCCCC-CcH
Confidence 99999999999999999987543 454
No 49
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.72 E-value=0.00021 Score=74.87 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhcC--CCcceEecCCCCCCCCccccccc---cCCCcceeeceeeEEE-eChhHHHHHhcCcc---ch
Q 004544 166 SIAEETLAEFLSKATG--TAVDWVQMPGMKPGPDSVGIFAI---SQSCSGVAARACGLVS-LEPTKIAEILKDRP---SW 236 (745)
Q Consensus 166 ~lA~~am~Ell~~a~~--~~plWi~~~g~k~g~~~~~~~~~---~~~~~~eASR~~glV~-m~~~~LVe~lmD~~---~W 236 (745)
..-++-.+|.+++|.. ++..|--.-. +.| +.++-. ..|.....=|+.++|. ..+..+.+.|.|.+ +|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~g---ikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~W 81 (235)
T cd08872 6 PEVDEKVQEQLTYALEDVGADGWQLFAE-EGE---MKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDW 81 (235)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEe-CCc---eEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHH
Confidence 3446678899999984 4667876422 112 222210 0122223568888888 88899999999975 56
Q ss_pred hhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccC-------CcEEEEEeecCCCCCCCCCCCc
Q 004544 237 FRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDN-------GSLVVCERSLSGSGAGPNPASA 309 (745)
Q Consensus 237 ~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~-------G~waVvDvSld~~~~~~~~~~~ 309 (745)
-..|-..++|+.++.+. .+.|..+-.|=| +..|||.++|+-++.++ +.|+||..|++- +..|+.
T Consensus 82 d~~~~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~ 152 (235)
T cd08872 82 ETTLENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLN 152 (235)
T ss_pred HhhhheeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCC
Confidence 66777777887776432 345666667888 69999999999998877 789999999874 334555
Q ss_pred cccccccc---cCcceeeeec--------CCCccEEEEEEeeecc
Q 004544 310 AQFVRAEM---LPSGCLIRPC--------DGGGSIIHIVDHLNLE 343 (745)
Q Consensus 310 ~~~~r~~r---lPSGclIq~~--------~nG~SkVtwVeH~e~d 343 (745)
..++|++. +=.|.+|.+= +||.|+||++-|++--
T Consensus 153 ~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPg 197 (235)
T cd08872 153 NKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPG 197 (235)
T ss_pred CCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCC
Confidence 67888875 2334343331 5889999999999743
No 50
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.65 E-value=2.5e-05 Score=81.54 Aligned_cols=59 Identities=29% Similarity=0.537 Sum_probs=54.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~---~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Kr 87 (745)
..+|||..|+..-.++|..+|.. +|||+...+++||+++ |++..||-.||.|+|-+.|+
T Consensus 187 darRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 187 DARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 34788889999999999999954 7999999999999999 99999999999999999876
No 51
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.62 E-value=0.00015 Score=74.38 Aligned_cols=152 Identities=17% Similarity=0.275 Sum_probs=105.2
Q ss_pred CCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEEE-eChhHHHHHhcCc---cchhhhCCcceEeeeecCCCccH
Q 004544 182 TAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVS-LEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGT 256 (745)
Q Consensus 182 ~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV~-m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~G~~G~ 256 (745)
+.+.|-..... .| +.++-. ..+...-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.| .
T Consensus 23 ~~~~W~l~~~~-~~---i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~---~ 93 (207)
T cd08910 23 DGAAWELLVES-SG---ISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG---E 93 (207)
T ss_pred CCCCeEEEEec-CC---eEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC---C
Confidence 45679876432 12 222211 1233335678888888 7999999999994 567776643 44433332 2
Q ss_pred HHHHHHhhhccccccCCceeeEEeeee-eccCC--cEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccE
Q 004544 257 IELLYTQAYAPTTLAPARDFWTLRYTT-TLDNG--SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSI 333 (745)
Q Consensus 257 lqLm~aE~~v~SPLvp~Re~~fLRYck-ql~~G--~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~Sk 333 (745)
.++|..+..|-| +..|||-++|-.. .-.+| .|+|+..|.+- |..|....++|....-+|++|++..++.|+
T Consensus 94 -~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~ 167 (207)
T cd08910 94 -TVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSK 167 (207)
T ss_pred -EEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceE
Confidence 456888888999 9999999996444 33344 68888888763 334555689999999999999999889999
Q ss_pred EEEEEeeeccccCccc
Q 004544 334 IHIVDHLNLEAWSVPE 349 (745)
Q Consensus 334 VtwVeH~e~d~~~v~~ 349 (745)
|+++-|.+-. ..+|.
T Consensus 168 i~~~~~~DPg-G~IP~ 182 (207)
T cd08910 168 VFMYYFDNPG-GMIPS 182 (207)
T ss_pred EEEEEEeCCC-CcchH
Confidence 9999999842 34553
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.59 E-value=0.00016 Score=75.76 Aligned_cols=121 Identities=20% Similarity=0.155 Sum_probs=91.8
Q ss_pred eeceeeEEEeChhHHHHHhcCcc---chhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeec-cC
Q 004544 212 AARACGLVSLEPTKIAEILKDRP---SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTL-DN 287 (745)
Q Consensus 212 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql-~~ 287 (745)
+=|.-+.|...+.+|.+.|.|.+ +|-..+...++|+-+... ..++|..+..|. -+..|||-++|+.++. ++
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d----~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED----DGIYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC----cEEEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 34555668889999999999965 677777788888876632 123443333333 4889999999999984 44
Q ss_pred C-cEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeee
Q 004544 288 G-SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLN 341 (745)
Q Consensus 288 G-~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e 341 (745)
| ..+|.=.|+.- +..|+...|+|.+.+=.|++|++.++|.|+||.+-|+|
T Consensus 153 ~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 3 37787777652 23556678999999999999999999999999999986
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.39 E-value=0.0013 Score=67.28 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCC--CcceEecCCCCCCCCc-ccccccc-CCCcceeeceeeEE-EeChhHHHHHhcC---ccchhhhCC
Q 004544 170 ETLAEFLSKATGT--AVDWVQMPGMKPGPDS-VGIFAIS-QSCSGVAARACGLV-SLEPTKIAEILKD---RPSWFRDCR 241 (745)
Q Consensus 170 ~am~Ell~~a~~~--~plWi~~~g~k~g~~~-~~~~~~~-~~~~~eASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~ 241 (745)
+=++||+...+.. ...|-.... |.|+.. +.+.-.. .+...-.=|+.+++ .+.+..|.+.|+| +.+|-..|-
T Consensus 6 ~d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~ 84 (209)
T cd08870 6 EDLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI 84 (209)
T ss_pred HHHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee
Confidence 3355666665543 257988744 234322 4333211 22334567888888 5699999999999 567888888
Q ss_pred cceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCccccccccccCcc
Q 004544 242 SLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSG 321 (745)
Q Consensus 242 ~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 321 (745)
..++|+.... .| ..++|..+..|-|+ -.||+-+.|=..+..+|..+|+-.|++. +..|.. .++|.+.+=||
T Consensus 85 ~~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 85 EHETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESS 155 (209)
T ss_pred eEEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeE
Confidence 8888876432 12 35678888999888 9999999987777778999888888774 334444 78999999999
Q ss_pred eeeeec--CCCccEEEEEEeeeccccCccc
Q 004544 322 CLIRPC--DGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 322 clIq~~--~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
++|++. .+|.++++++-|.+- ...+|.
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~ 184 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNP-DGGIPR 184 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECC-CCCCCH
Confidence 999999 789999999999973 335764
No 54
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.38 E-value=0.00043 Score=69.09 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred eeeceeeEEEeChhHHHHHhcCccchh---hhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-cc
Q 004544 211 VAARACGLVSLEPTKIAEILKDRPSWF---RDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LD 286 (745)
Q Consensus 211 eASR~~glV~m~~~~LVe~lmD~~~W~---~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckq-l~ 286 (745)
-.-|..++|..++.++.+++.|.+.|. ..|...++++-+..+ . .++|..+..|=| +..|||.+.|.... .+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~---~-~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDN---E-RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCC---c-EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 456899999999999999999976654 445555666644322 1 234444444444 78999998765443 33
Q ss_pred CCcEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeeccccCccccccccc
Q 004544 287 NGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLY 355 (745)
Q Consensus 287 ~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~lyRpL~ 355 (745)
+|..+|.=.|.+.. .|....|+|.+.+.+|+.|++.++|.|+||++-|++..-+-..-+.+.+.
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~ 179 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA 179 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 67777766666532 22234788999999999999999999999999999987443333444443
No 55
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.28 E-value=3.9e-05 Score=59.33 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=28.8
Q ss_pred cCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhH
Q 004544 47 ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 84 (745)
Q Consensus 47 ~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK 84 (745)
.+|||+..++.+|+++. ||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 47999999999999999 99999999999999864
No 56
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.20 E-value=0.0016 Score=68.50 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=99.7
Q ss_pred eeceeeEEEeChhHHHHHhcCc---cchhhhCCcceEeeeecCCCccHHHHHHHhhhccc-cccCCceeeEEeeeeecc-
Q 004544 212 AARACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPT-TLAPARDFWTLRYTTTLD- 286 (745)
Q Consensus 212 ASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~S-PLvp~Re~~fLRYckql~- 286 (745)
+=|.-..+...+.+|.+.|.|. .+|...|...++|+-+..... +|...-.|- |+ ..|||-++|=-.+..
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~Pv-k~RD~V~~~s~~~~~~ 152 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNND-KPKDLVVLVSRRKPLK 152 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCCC-CCceEEEEEEEEecCC
Confidence 5566667888999999999996 578888888889888774332 355443332 44 899999987766555
Q ss_pred CCc-EEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeeccccCcccccccc
Q 004544 287 NGS-LVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPL 354 (745)
Q Consensus 287 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~lyRpL 354 (745)
+|. ++|.=.|+.. +..|+...|+|.+.+=+|++|++.++|.|+||.+-|+| +..+|...-.+
T Consensus 153 dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 153 DGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 886 8888888764 34566778999999999999999999999999999995 46666544443
No 57
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.18 E-value=0.0018 Score=66.31 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccccccc-cCCCcceeeceeeEEEeChhHHHHHhcCccc---hhhhC
Q 004544 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDRPS---WFRDC 240 (745)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~g~k~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~~---W~~~f 240 (745)
+.-+...|.|+++.-+. +..|...... .| +.++-. ..+....+-|.-|.+.-++..+.++|.|.+. |...|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~-~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES-EG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC-CC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34445677888877665 5579875321 12 222211 1122246778999999999999899998765 54454
Q ss_pred CcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEE-eeeeec-cCCcEEEEEeecCCCCC-----CCCCCCcc-cc
Q 004544 241 RSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTL-RYTTTL-DNGSLVVCERSLSGSGA-----GPNPASAA-QF 312 (745)
Q Consensus 241 ~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fL-RYckql-~~G~waVvDvSld~~~~-----~~~~~~~~-~~ 312 (745)
-..+++..+.-. -++.|..+-+|-| +..||+.+. +.+..+ ++|..+|+=.|++.... +...|+.. .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 444555554432 1345556666777 888999985 556677 99999999999985321 11134445 78
Q ss_pred ccccccCcceeeeecCCCccEEEEEEeeeccccCccc
Q 004544 313 VRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 313 ~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
+|.+...+|++|+++++|.|+|+++-|++-.-+-||.
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH
Confidence 9999999999999999999999999997633222664
No 58
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.13 E-value=0.00031 Score=71.66 Aligned_cols=62 Identities=35% Similarity=0.625 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke 90 (745)
..++.++.++..|+..++..|..+++|+...+.+|+..+ |+.++.+++||||+|++.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 152 KPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 456678889999999999999999999999999999999 99999999999999999887544
No 59
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.07 E-value=0.00038 Score=79.53 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCCccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHH
Q 004544 19 SINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (745)
Q Consensus 19 ~~~~~~~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~K 86 (745)
..++.-..+|.|..||..|.+.|..+|+++++|+....+.|+.+| ||+..-|..||-|-|.|.+
T Consensus 413 ~~d~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 413 TDDKMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred CccccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 334444667889999999999999999999999999999999999 9999999999999998753
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.07 E-value=0.0042 Score=65.48 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=92.0
Q ss_pred ceeeEEEeChhHHHHHhcCcc---chhhhCCcceEeeeecCCCccHHHHHHHhhhccc-c---ccCCceeeEEeeeeec-
Q 004544 214 RACGLVSLEPTKIAEILKDRP---SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPT-T---LAPARDFWTLRYTTTL- 285 (745)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~---~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~S-P---Lvp~Re~~fLRYckql- 285 (745)
|.-+.|...+.+|.+.|.|.+ +|-..|...++|+.+.... .+ .++.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-----~v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-----AI---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-----EE---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 555788899999999999965 6777788888888776521 11 22222 2 5889999999888664
Q ss_pred cCC-cEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeeccccCccc
Q 004544 286 DNG-SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (745)
Q Consensus 286 ~~G-~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d~~~v~~ 349 (745)
++| .++|+=.|+.- |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+|.
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~ 214 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPY 214 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccH
Confidence 444 46676666653 33566778999999999999999999999999999998 335664
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.07 E-value=0.0012 Score=67.57 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=97.8
Q ss_pred eeeceeeEE-EeChhHHHHHhcCc---cchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeec-
Q 004544 211 VAARACGLV-SLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTL- 285 (745)
Q Consensus 211 eASR~~glV-~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql- 285 (745)
..=|+.+++ ...+..+++.|+|. .+|...+-..++|+....- ++ .++|..+..|-|+ ..||+-+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~~-~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--GS-EIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--CC-EEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 456876655 78899999999996 4788888877888764321 22 4578888899886 99999998876665
Q ss_pred cCCcEEEEEeecCCCCCCCCCCCccccccccccCcceeeeecC---CCccEEEEEEeeecccc-Cccc
Q 004544 286 DNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCD---GGGSIIHIVDHLNLEAW-SVPE 349 (745)
Q Consensus 286 ~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~---nG~SkVtwVeH~e~d~~-~v~~ 349 (745)
++|.++|+-.|++. +..|....++|.....+|++|++.. +++++|+++-|. |+. .+|.
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~ 182 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS 182 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH
Confidence 45677888888873 2344555899999999999999994 678999988885 555 4663
No 62
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.39 E-value=0.0081 Score=74.62 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=57.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHH
Q 004544 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 25 ~~rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~ 91 (745)
.+|++|++++..|+..+...|....+|...+.+.|...+ +++++.|.+||||-|.|.|+..++
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 345678999999999999999999999999999999998 999999999999999999986653
No 63
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.21 E-value=0.9 Score=47.01 Aligned_cols=130 Identities=13% Similarity=0.310 Sum_probs=79.4
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhcccccchh
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADFNVDAY 481 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~d~~ 481 (745)
..++|.... ..++++|..+++.+..|. + .++..-+ |.+|+.||+||.+ +|.+||-. +
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~~~gk------------l--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~-~--- 78 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRKYHGN------------L--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS-L--- 78 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCCCCce------------E--EEEEEEe-cCCHHHHHHHHhccchhhhhccc-c---
Confidence 348999874 348899999887643332 1 2444556 8999999999997 99999963 1
Q ss_pred hhhhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeccCCCCCCCCceeEE
Q 004544 482 SAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSEL 561 (745)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~~~~~~~~~~~lLQe~s~~De~~~Gscs~v 561 (745)
.+ .+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.-..| - | .++
T Consensus 79 -----~~---------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~--~-~--~~i 126 (204)
T cd08904 79 -----QV---------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE--G-N--MNI 126 (204)
T ss_pred -----cc---------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC--C-C--EEE
Confidence 11 2344333 555577766654311 1125578999888732233 1 3 233
Q ss_pred E-EecccCC----CCCCC--CccCCccEEecC
Q 004544 562 V-FAPIDEM----FPDDG--PLLPSGFRIIPL 586 (745)
Q Consensus 562 V-yAPvD~~----~s~~v--~LLPSGF~I~Pl 586 (745)
+ +.-|+-. .++.| -..|+||.|.|+
T Consensus 127 i~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl 158 (204)
T cd08904 127 VSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPL 158 (204)
T ss_pred EEEEecccCCCCCCCCcEEEeeeccEEEEEEC
Confidence 3 3333332 23444 378999999994
No 64
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.35 E-value=1.5 Score=44.70 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=43.1
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhhhhhhhccc
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (745)
..++|..... .++|+|.+++..+ +. .+.--++.+-+ +.+|+.|++.|.|.|.+||..
T Consensus 17 ~~~~W~~~~~--~~gi~I~~k~~~~--~~-----------~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVSS--SDHVELAFKKVDD--GH-----------PLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEec--CCcEEEEEEeCCC--CC-----------cEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 4689986542 5699999988642 11 23444777888 899999999999999999974
No 65
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.80 E-value=7.6 Score=40.48 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhhhhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (745)
-...||....+ .++|.|.++|..+ + . |.-.+.| |+=++.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~~--~~~vev~~kk~~d-~-~--------~l~lwk~---s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAPG--PDNTELACKKVGD-G-H--------PLRLWKV---STEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeecC--CCCcEEEEEeCCC-C-C--------ceEEEEE---EEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 56679987743 5789999998643 2 2 3334544 455678999999999999 9999975
No 66
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=93.70 E-value=1.1 Score=46.09 Aligned_cols=57 Identities=25% Similarity=0.464 Sum_probs=41.4
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
..++|..... .++|+|..++..+ +.+...++...++.+||+.+|++|.| .|.+||..
T Consensus 21 ~~~~W~~~~~--~~gi~iy~r~~~~--------------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~ 79 (222)
T cd08871 21 STDGWKLKYN--KNNVKVWTKNPEN--------------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSN 79 (222)
T ss_pred CCCCcEEEEc--CCCeEEEEeeCCC--------------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhh
Confidence 3568997653 4679998877531 13444555566657999999999998 89999975
No 67
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=92.45 E-value=0.093 Score=57.64 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=47.8
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHH
Q 004544 27 NGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (745)
Q Consensus 27 rrkRtr~T~~Ql~~LE~~F~~---~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Kr 87 (745)
.|++..+.......|+....+ .|||+...+..|+++. ||+..||..||-|.|-|..+
T Consensus 240 ~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 240 WRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 445557888889998877433 5899999999999999 99999999999999977444
No 68
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=92.33 E-value=0.18 Score=47.64 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHHHhhHHHHHhhHH
Q 004544 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKL 107 (745)
Q Consensus 28 rkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~~~n~~L~aen~~ 107 (745)
++|.+||.++....-.....+. ....++|+++ |+++.++.-|-+. .+.....................
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g----~sv~evA~e~----gIs~~tl~~W~r~----y~~~~~~~~~~~~~~~~~~~~~~ 75 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG----MTVSLVARQH----GVAASQLFLWRKQ----YQEGSLTAVAAGEQVVPASELAA 75 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC----CCHHHHHHHH----CcCHHHHHHHHHH----HhhcccccccccccCCchhHHHH
Confidence 4456788887554433333332 2467789999 9999999999432 21111000000000001112234
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 108 LMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 108 l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
+.+++.+|.+++.+|+.||+-||.-+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999999997764
No 69
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=92.14 E-value=0.98 Score=46.72 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=39.5
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
-..++|. +.. ..++|+|.++... + . .-++++. +-+ ++||+.|+++|+| .|.+||..
T Consensus 19 ~~~~gW~-l~~-~~~gI~Vy~k~~~--~-~---------~~~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQC-LEKDVVIYYKVFN--G-T---------YHGFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EEe-cCCCEEEEEecCC--C-C---------cceEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 4678994 443 3578999887632 1 2 1245543 345 8999999999998 89999974
No 70
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=91.69 E-value=3.1 Score=40.46 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=73.2
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhcccccchhhh
Q 004544 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADFNVDAYSA 483 (745)
Q Consensus 406 ~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~d~~s~ 483 (745)
++|..+... ++|+|..++..+. .+...++..-+ +.|+..++++|.| .|.+||..-.+
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~~--------------~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~---- 73 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYEDS--------------GLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEE---- 73 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCCC--------------CceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceE----
Confidence 589987643 4788877665321 23445556677 7899999999996 89999964111
Q ss_pred hhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeccCCCCCCCCceeEEEE
Q 004544 484 ASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSELVF 563 (745)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~~~~~~~~~~~lLQe~s~~De~~~Gscs~vVy 563 (745)
..++..+.. +..|--.+....-+ +-+||++++..+ ..++ .|. -+++.
T Consensus 74 --------------------~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~~-~~~~~ 120 (193)
T cd00177 74 --------------------FEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DGT-YVIVS 120 (193)
T ss_pred --------------------EEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CCe-EEEEE
Confidence 223333322 12333333332211 557899999875 4553 343 46777
Q ss_pred ecccCCC-C---CCC--CccCCccEEec
Q 004544 564 APIDEMF-P---DDG--PLLPSGFRIIP 585 (745)
Q Consensus 564 APvD~~~-s---~~v--~LLPSGF~I~P 585 (745)
.+||... | +.+ .++++||.|-|
T Consensus 121 ~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 121 KSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred eecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 7777641 1 222 24466676666
No 71
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=91.43 E-value=11 Score=38.58 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHH
Q 004544 385 LRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR 464 (745)
Q Consensus 385 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~ 464 (745)
|++.|.. +..|...+.. .++|..... .++|+|..|...+ +.+++-++-..+ +.|+..++.
T Consensus 4 ~~~~~~~-~~~~~~~l~~--~~~W~~~~~--~~~i~v~~r~~~~--------------~~~~~~k~e~~i-~~~~~~~~~ 63 (215)
T cd08877 4 IRQEATI-MQENLKDLDE--SDGWTLQKE--SEGIRVYYKFEPD--------------GSLLSLRMEGEI-DGPLFNLLA 63 (215)
T ss_pred HHHHHHH-HHHHHhcccC--CCCcEEecc--CCCeEEEEEeCCC--------------CCEEEEEEEEEe-cCChhHeEE
Confidence 3444433 3455555555 778998752 4789999988641 237899999999 789999999
Q ss_pred HHhh--hhhhhccc
Q 004544 465 FLRE--HRSEWADF 476 (745)
Q Consensus 465 FLRd--~RseWd~l 476 (745)
+|+| .+.+|+..
T Consensus 64 vl~d~~~~~~W~p~ 77 (215)
T cd08877 64 LLNEVELYKTWVPF 77 (215)
T ss_pred EEehhhhHhhhccc
Confidence 9998 99999975
No 72
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=91.17 E-value=0.25 Score=51.17 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=81.2
Q ss_pred ccchhhhCC--cceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEee-eeeccC-CcEEEEEeecCCCCCCCCCC-
Q 004544 233 RPSWFRDCR--SLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRY-TTTLDN-GSLVVCERSLSGSGAGPNPA- 307 (745)
Q Consensus 233 ~~~W~~~f~--~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRY-ckql~~-G~waVvDvSld~~~~~~~~~- 307 (745)
..+|...+- .+++++....|.++..++.|.+..+|-| +..|||..+.. +...+. ..++|+..+++.. ..|
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~ 139 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVES 139 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCc
Confidence 347888887 7888888776655555667777788888 89999999999 666652 5678999998743 222
Q ss_pred CccccccccccCcceeeeecCC---CccEEEEEEeeecccc-Cccc
Q 004544 308 SAAQFVRAEMLPSGCLIRPCDG---GGSIIHIVDHLNLEAW-SVPE 349 (745)
Q Consensus 308 ~~~~~~r~~rlPSGclIq~~~n---G~SkVtwVeH~e~d~~-~v~~ 349 (745)
....++|.+ .=||..|+..+. |-..|+|.==...|+. .||.
T Consensus 140 ~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 140 LYENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred cCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 234788888 679999998875 4789999983344454 4664
No 73
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=90.62 E-value=0.055 Score=45.05 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=31.1
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccch
Q 004544 37 QVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (745)
Q Consensus 37 Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRR 82 (745)
-++.|++.|...+++....-..|..+. +|+..||+.||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 357799999999999999999999999 999999999996543
No 74
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.33 E-value=1.2 Score=37.46 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 004544 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCEN 126 (745)
Q Consensus 82 RaK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN 126 (745)
++|.|++.....++.....|..+|..|++++..|..+...|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666666677777777777777777777777777666666665
No 75
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=89.21 E-value=0.76 Score=48.07 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=83.1
Q ss_pred eChhHHHHHhcC---ccchhhhCCcceEeeeec-CCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEee
Q 004544 221 LEPTKIAEILKD---RPSWFRDCRSLEVFTMFP-AGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERS 296 (745)
Q Consensus 221 m~~~~LVe~lmD---~~~W~~~f~~i~vl~~~~-~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDvS 296 (745)
+.|..|-++++| +.+|=.+--.+++|+..+ +|+ +++|-+.+.|.|+- .||+-++|---+.++-.-+||-.|
T Consensus 64 vtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~ 138 (219)
T KOG2761|consen 64 VTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGT----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKS 138 (219)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCc----eEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEec
Confidence 568899999999 568888888889998887 442 56778888998875 599999987777776777888887
Q ss_pred cCCCCCCCCCCCccccccccccCcceeee-----ecCCC-ccEEEEEEe
Q 004544 297 LSGSGAGPNPASAAQFVRAEMLPSGCLIR-----PCDGG-GSIIHIVDH 339 (745)
Q Consensus 297 ld~~~~~~~~~~~~~~~r~~rlPSGclIq-----~~~nG-~SkVtwVeH 339 (745)
+.. +..|+...++|..-.=||.+|| +=++| .|.++|.+|
T Consensus 139 v~h----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 139 VQH----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred ccC----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 763 4455555678888899999999 44444 344555544
No 76
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=87.85 E-value=29 Score=35.43 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=39.2
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHh-h--hhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLR-E--HRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLR-d--~RseWd~l 476 (745)
-.+.+|.... +..++|.|.++...+ . +-+ .++...+ ++||+.||++|- | .|.+||..
T Consensus 21 ~~~~~W~l~~-~~~~~i~i~~r~~~~---~----------~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 21 LTDPGWKLEK-NTTWGDVVYSRNVPG---V----------GKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred hcCCCceEEE-ecCCCCEEEEEEcCC---C----------ceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 3355998764 333488999888532 1 223 4445667 899999998765 4 89999975
No 77
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=86.87 E-value=3.2 Score=43.86 Aligned_cols=164 Identities=17% Similarity=0.154 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCcccccCCC-----ccEEEEEecCCCCCCCCCCCCCCCCCC-eEEEEeeeccccCC
Q 004544 384 VLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGA-----EDVIIAVNSTKSLSTASNPTNSLAFLG-GILCAKASMLLQNV 457 (745)
Q Consensus 384 sl~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrV~~r~s~~~~g~~~~~~~~~~~g-~VL~A~tS~wL~pv 457 (745)
-|+.||..-+.-|- .+.-.+.--|.+..+.+. |....+..+. .+ ..|+| .+..+-++-+. ++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~--~~--------~~~~~~~~eASR~~glV-~m 70 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRH--GG--------SKPGGFTTEASRACGLV-MM 70 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCc--CC--------CCCCCCeEEEEeeeEEE-ec
Confidence 68899999999998 555566778998765532 2211111111 01 11344 68888889888 89
Q ss_pred ChHHHHHHHhhhhhhhccc-ccchhhhhhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccc
Q 004544 458 PPALLVRFLREHRSEWADF-NVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAF 536 (745)
Q Consensus 458 pp~~lf~FLRd~RseWd~l-~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~~~~~ 536 (745)
.|..|.++|.|. .+|..+ ..++..+..++....+..| ..+..+.|+..+-+-++ --+
T Consensus 71 ~~~~lVe~lmD~-~kW~~~Fp~iv~~a~tl~vistg~~g-------------------~~~G~lqlmyael~~pS--pLV 128 (229)
T cd08875 71 NAIKLVEILMDV-NKWSELFPGIVSKAKTLQVISTGNGG-------------------NRNGTLQLMYAELQVPS--PLV 128 (229)
T ss_pred CHHHHHHHHhCh-hhhhhhhhhhcceeeEEEEeeCCCCC-------------------CCCceehhhhhhcccCc--ccc
Confidence 999999999992 334442 1122222222222222212 23346667766654333 236
Q ss_pred cCCceEEEeeccCCCCCCCCceeEEE-EecccCC----CCC---CCCccCCccEEecC
Q 004544 537 VSRDIHLLQICSGVDENAVGACSELV-FAPIDEM----FPD---DGPLLPSGFRIIPL 586 (745)
Q Consensus 537 ~~~~~~lLQe~s~~De~~~Gscs~vV-yAPvD~~----~s~---~v~LLPSGF~I~Pl 586 (745)
-.||..+|.-|...+ .|. .+| -=.+|.. .+. ..-.+||||-|-|.
T Consensus 129 p~Re~~fLRyc~~l~---dG~--w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 129 PTREFYFLRYCKQLE---DGL--WAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred cCCeEEEEEEEEEeC---CCe--EEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 688999999986444 563 333 2244432 122 22479999999983
No 78
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.81 E-value=11 Score=39.30 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhhhhhhhccc
Q 004544 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (745)
Q Consensus 406 ~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (745)
.+|..+.+ .+++.+..+|..+ +. | +=--++++=+ +.||..|+..+-+.|.+||..
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~d--~~--------~---lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~ 81 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVGD--GN--------P---LRLWKVSVEV-EAPPSVVLNRVLRERHLWDED 81 (205)
T ss_pred cCCcccCC--cCCeEEEEecCCC--CC--------c---eEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhh
Confidence 57877743 4788898888642 22 1 2234557888 666666655554479999974
No 79
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=86.53 E-value=1.9 Score=45.52 Aligned_cols=58 Identities=29% Similarity=0.275 Sum_probs=37.4
Q ss_pred cccchhHHHHHHH-----HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 78 FQNRRCREKQRKE-----ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 78 FQNRRaK~Krrke-----~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
-||-|-|.|.|.+ -..+..+|.+|..+|+.|++.++.|-.+.++|+.+-..|++||..
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3666666555443 334556677777777777777777766666676666666666654
No 80
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=85.56 E-value=14 Score=37.08 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHH-HHHHHhh--hhhhhcccccchh
Q 004544 405 DDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPAL-LVRFLRE--HRSEWADFNVDAY 481 (745)
Q Consensus 405 ~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~-lf~FLRd--~RseWd~l~~d~~ 481 (745)
.++|..... +.+++.+..+... ++ ..+-..++...+ +.+|+. +.++|.| .|.+||..-.
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~--~~-----------~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~--- 79 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP--GR-----------SPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVA--- 79 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC--CC-----------CceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcc---
Confidence 468998753 2344444444332 11 136677888888 678875 6678887 8999997511
Q ss_pred hhhhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeccCCCCCCCCceeEE
Q 004544 482 SAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSEL 561 (745)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~~~~~~~~~~~lLQe~s~~De~~~Gscs~v 561 (745)
..+.+-.+. .++.|.-......- .-+-+||..++.-+. .| ..|++. +
T Consensus 80 ---------------------~~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~~v-i 126 (206)
T smart00234 80 ---------------------KAETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGSYA-V 126 (206)
T ss_pred ---------------------cEEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCcEE-E
Confidence 123343332 22333333222211 134568898888753 44 345422 2
Q ss_pred EEecccCC----CCCCC--CccCCccEEecCC
Q 004544 562 VFAPIDEM----FPDDG--PLLPSGFRIIPLD 587 (745)
Q Consensus 562 VyAPvD~~----~s~~v--~LLPSGF~I~Pl~ 587 (745)
+..-++-. .+..| .++++||.|-|++
T Consensus 127 ~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 127 VDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred EEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 33244433 12222 4899999999953
No 81
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=84.64 E-value=9.9 Score=40.46 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=39.8
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
...++|..-.. .++|+|.++... . +++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s----~------------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED----K------------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC----C------------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678986543 478999985421 1 1333555677 8999999999998 99999974
No 82
>smart00338 BRLZ basic region leucin zipper.
Probab=82.07 E-value=5.4 Score=33.58 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=24.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 100 KLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 100 ~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.|..+...|..++..|..++..|..|+..|++++.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666777777777777778888877653
No 83
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=81.72 E-value=72 Score=33.40 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
-...+|..-... +||.|..+.++..+|.. ..++ +|+ +.-|+.|++|+.+ +|.+||..
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~ef~gkl---~R~E---gvv---------~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEEFGGYL---YKAQ---GVV---------EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCcCCCce---EEEE---EEe---------cCCHHHHHHHHhcccchhcccch
Confidence 367899876533 88999999886555441 0111 344 5778999999998 89999974
No 84
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=80.11 E-value=3.4 Score=41.20 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=44.0
Q ss_pred hccCC-CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhcc
Q 004544 399 AVNGF-NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWAD 475 (745)
Q Consensus 399 ~v~~s-~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~ 475 (745)
+.+++ ++.+|..... .++|+|..++..+ +.+..-+++..+ +.||+.+++++.| +|.+||.
T Consensus 9 ~~~~~~~~~~W~~~~~--~~~v~v~~~~~~~--------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~ 71 (195)
T cd08876 9 AGAALAPDGDWQLVKD--KDGIKVYTRDVEG--------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQWMP 71 (195)
T ss_pred cccccCCCCCCEEEec--CCCeEEEEEECCC--------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHh
Confidence 34444 4445988763 4789999887531 123455667778 7999999999998 8999997
Q ss_pred c
Q 004544 476 F 476 (745)
Q Consensus 476 l 476 (745)
.
T Consensus 72 ~ 72 (195)
T cd08876 72 N 72 (195)
T ss_pred h
Confidence 4
No 85
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=78.95 E-value=3 Score=44.24 Aligned_cols=54 Identities=15% Similarity=0.357 Sum_probs=39.8
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
..++|..-. ..++|+|.++.+ + .+++-+.=+-+ ++|++.||++|.| .|.+||..
T Consensus 53 ~~~~W~l~~--~k~gIkVytr~~---s-------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVAS--STTSVTLYTLEQ---D-------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEEE--cCCCEEEEEecC---C-------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 467898653 357899999873 1 23444444447 8999999999998 99999974
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.71 E-value=3.6 Score=32.59 Aligned_cols=28 Identities=39% Similarity=0.380 Sum_probs=24.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVSQLVCE 125 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~~L~~E 125 (745)
-+.|+..++.|.++|++|++++++||.-
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999988854
No 87
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.24 E-value=6.8 Score=31.36 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=26.8
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 96 ~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
..-+.|++.++.|+.++++|.++.+.|+.|-..|+..++
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344567777777777777777777777777776666553
No 88
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=78.13 E-value=89 Score=32.32 Aligned_cols=71 Identities=7% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHH-H
Q 004544 387 TFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR-F 465 (745)
Q Consensus 387 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~-F 465 (745)
+.++-=...|..-+.. .++|..-. +..++|+|.+++..+. | .+-++-+-+ ++||+.||+ .
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~~-------------~--~~fk~~~~v-~~~~~~l~~~l 68 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPFH-------------G--KTFILKAFM-QCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCCC-------------C--cEEEEEEEE-cCCHHHHHHHH
Confidence 3344444455544433 46898543 3357889988655311 2 333667777 799999985 5
Q ss_pred Hhh--hhhhhccc
Q 004544 466 LRE--HRSEWADF 476 (745)
Q Consensus 466 LRd--~RseWd~l 476 (745)
|.| .|.+||..
T Consensus 69 l~D~~~~~~W~~~ 81 (209)
T cd08906 69 ILQPEKMVLWNKT 81 (209)
T ss_pred HhChhhccccCcc
Confidence 676 99999974
No 89
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=77.91 E-value=93 Score=32.42 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhhhhhhhccc
Q 004544 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (745)
Q Consensus 406 ~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (745)
.+|..+. ..+.|.+..+|.. + |. .+.--++++-+ |.+|+.|+..|-|-|.+||..
T Consensus 27 k~w~~~~--~~~~~el~~~k~~-~-gs-----------~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 27 KGWVSYS--TSEQAELSYKKVS-E-GP-----------PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred cCCcccC--CCCcEEEEEeccC-C-CC-----------CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 3777774 3577899998863 2 21 35666777888 677777775555559999975
No 90
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=75.36 E-value=6 Score=40.57 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCCcccccCCCc--cEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 405 DDGWSLMTCDGAE--DVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 405 ~~~W~~l~~~g~~--dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
+++|.......++ +|+|-.|...+ . ++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~~---s-----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPKG---T-----------GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccCC---C-----------CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643222 36665554321 1 2334555667767899999999998 89999975
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=74.21 E-value=5.6 Score=43.17 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHH----HHHHHHHHhHHHHHhhcc
Q 004544 100 KLTAMNKLLMEENDRLQK----QVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 100 ~L~aen~~l~ee~~~l~~----~~~~L~~EN~~Lk~el~r 135 (745)
.+.+||+.|++++.++.. ..+.|+.||++||+.|.-
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666666666544422 233489999999998874
No 92
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=73.14 E-value=1.7 Score=52.00 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=43.9
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHH
Q 004544 38 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 38 l~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrk 89 (745)
...|...|..|..|+..+-..++... |+..+.||.||+++++....-.
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 77889999999999999999999999 9999999999999999876543
No 93
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=71.77 E-value=6.1 Score=42.00 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=43.7
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 403 s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
...++|..-. ..++|+|-++. + . .+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~----~-s-----------~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE----E-H-----------DVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec----C-C-----------CcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578998653 35789999873 1 1 25788888888 8999999999998 89999975
No 94
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=71.46 E-value=6.8 Score=40.32 Aligned_cols=56 Identities=13% Similarity=0.330 Sum_probs=41.3
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh----hhhhhccc
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE----HRSEWADF 476 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd----~RseWd~l 476 (745)
..++|.... + .++|+|.++++...+|. + -++-.-+ |++|+.||++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~~~~~------------~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAEFAGN------------L--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCCCCCc------------E--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567898775 3 36999999987533322 2 4445566 8999999999984 68999974
No 95
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=71.43 E-value=43 Score=33.40 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHh
Q 004544 388 FSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLR 467 (745)
Q Consensus 388 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLR 467 (745)
|+.+...-|.. ......++|.........++. +++..... ...+...++..-+ +.++..+|..|.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~k~~~~v-~~~~~~~~~~~~ 66 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSPSD-----------SCPIKMFKAEGVV-PASPEQVVEDLL 66 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEECSS-----------STSCEEEEEEEEE-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCccc-----------cccceEEEEEEEE-cCChHHHHHHHH
Confidence 45555666653 335678899988733334443 34432111 0134566777778 788887777777
Q ss_pred hhhhhhcccccchhhhhhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeec
Q 004544 468 EHRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQIC 547 (745)
Q Consensus 468 d~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~~~~~~~~~~~lLQe~ 547 (745)
+.+.+||..-.+ .+.+-.+ ++++.|.....+..-. ..+.+||..+++-.
T Consensus 67 ~~~~~Wd~~~~~------------------------~~~le~~----~~~~~i~~~~~~~~~~---~p~~~RDfv~~~~~ 115 (206)
T PF01852_consen 67 DDREQWDKMCVE------------------------AEVLEQI----DEDTDIVYFVMKSPWP---GPVSPRDFVFLRSW 115 (206)
T ss_dssp CGGGHHSTTEEE------------------------EEEEEEE----ETTEEEEEEEEE-CTT---TTSSEEEEEEEEEE
T ss_pred hhHhhcccchhh------------------------heeeeec----CCCCeEEEEEecccCC---CCCCCcEEEEEEEE
Confidence 644499986111 2333333 2334555544443221 13567899988875
Q ss_pred cCCCCCCCCceeEEEEecccCCC-----CCCC--CccCCccEEec
Q 004544 548 SGVDENAVGACSELVFAPIDEMF-----PDDG--PLLPSGFRIIP 585 (745)
Q Consensus 548 s~~De~~~Gscs~vVyAPvD~~~-----s~~v--~LLPSGF~I~P 585 (745)
. .+ ..|+ -.+++..||-.. +..| -+++|||.|-|
T Consensus 116 ~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 116 R-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp E-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred E-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 3 33 3453 355666777652 2333 38899999999
No 96
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=71.14 E-value=8.4 Score=39.66 Aligned_cols=65 Identities=17% Similarity=0.379 Sum_probs=45.5
Q ss_pred Hhhhcc--CCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhh
Q 004544 396 FNDAVN--GFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRS 471 (745)
Q Consensus 396 F~~~v~--~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~Rs 471 (745)
||.=|+ .-.+.+|..... .++|+|-.|... + .++.--++...++.++|+.++++|.| .|.
T Consensus 13 ~~~~~~~~~~~~~~W~l~~~--~~~i~Vy~r~~~--~------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~ 76 (207)
T cd08910 13 ACAELQQPALDGAAWELLVE--SSGISIYRLLDE--Q------------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRK 76 (207)
T ss_pred HHHHhcCCCCCCCCeEEEEe--cCCeEEEEeccC--C------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHH
Confidence 444444 234467987753 468999877653 1 13446677778856999999999998 899
Q ss_pred hhccc
Q 004544 472 EWADF 476 (745)
Q Consensus 472 eWd~l 476 (745)
+||..
T Consensus 77 ~Wd~~ 81 (207)
T cd08910 77 QWDQY 81 (207)
T ss_pred HHHHH
Confidence 99975
No 97
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=70.36 E-value=7.9 Score=41.36 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=26.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHHhhcc
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVS---QLVCENGYMKQQLRT 135 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~---~L~~EN~~Lk~el~r 135 (745)
..++.++|+.|++|+.+++.+.. +++.||++||+.|.-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566666666666666655444 678999999998764
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.22 E-value=12 Score=32.90 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 100 KLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 100 ~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
.|+.+++.|++++..+..+...|+.||.+|+++.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555556666666666554
No 99
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=69.19 E-value=11 Score=41.13 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQ 131 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~ 131 (745)
+..+.+.|..+|++|..++++|..|-++||+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555554
No 100
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=67.93 E-value=29 Score=33.83 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=44.9
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHH
Q 004544 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLM 109 (745)
Q Consensus 30 Rtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~~l~~~n~~L~aen~~l~ 109 (745)
-.+||.+++..+- -.+|=+.| -|++...|--|=|.||+-.-+ --...++. +=-.....|.
T Consensus 21 ~d~lsDd~LvsmS-------------VReLNr~L---rG~~reEVvrlKQrRRTLKNR-GYA~sCR~---KRv~Qk~eLE 80 (135)
T KOG4196|consen 21 GDRLSDDELVSMS-------------VRELNRHL---RGLSREEVVRLKQRRRTLKNR-GYAQSCRV---KRVQQKHELE 80 (135)
T ss_pred CCCcCHHHHHHhh-------------HHHHHHHh---cCCCHHHHHHHHHHHHHHhhh-hHHHHHHH---HHHHHHHHHH
Confidence 3689998887662 22333333 277777777777777764211 11111111 1111123344
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 110 EENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 110 ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
.++..|..|+++|+.||++++.|++.
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666677777777666663
No 101
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=67.67 E-value=3.3 Score=33.82 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=35.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccch
Q 004544 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (745)
Q Consensus 27 rrkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRR 82 (745)
+|+|..+|-++...+-..++..+ ...++|+++ |+...+|.-|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 47788999999888888888776 588899999 999999999998853
No 102
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.16 E-value=9.5 Score=30.53 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~ 136 (745)
+..+++.|+...+.|..+...|..||+.|+.|+...
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666777666667777777777666543
No 103
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=66.08 E-value=9.3 Score=39.25 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=40.3
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 404 ~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
-..+|..... .++|+|-.|...+. ++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~s--------------~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPGT--------------GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCCC--------------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4556987753 46799887765421 2233455454558999999999998 99999975
No 104
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.18 E-value=20 Score=33.81 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~ 136 (745)
-..+.++-..|+.....+..+...|++||+.||+.|...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788888888888889999999999888764
No 105
>smart00338 BRLZ basic region leucin zipper.
Probab=62.60 E-value=44 Score=28.04 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 004544 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCEN 126 (745)
Q Consensus 82 RaK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN 126 (745)
+++.|++.....+...-..|..+|..|+.+...+..+...|+.+|
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666777777777788888888877777777777665
No 106
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=62.49 E-value=23 Score=28.89 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 004544 113 DRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 113 ~~l~~~~~~L~~EN~~Lk~el 133 (745)
..++.++..|..+|..|++++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 107
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=61.92 E-value=18 Score=42.48 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 004544 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (745)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~ 136 (745)
.-|...+..+.+|-++||.||+-||++|+-+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344455667777788899999999888753
No 108
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=61.69 E-value=16 Score=39.40 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhc
Q 004544 113 DRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 113 ~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
..|+++.+.|+.++..|++|+.
T Consensus 225 ~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 109
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.89 E-value=26 Score=33.23 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=30.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~ 136 (745)
-..+.++-..|+.....+..+...|++||..||+.|...
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777888888888999999999988874
No 110
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.87 E-value=43 Score=28.10 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=24.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
-..|......|..++..|..++..|..++..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666677777777777777777777776664
No 111
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=57.05 E-value=17 Score=42.75 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004544 91 ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMK 130 (745)
Q Consensus 91 ~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk 130 (745)
...++..-.++.+||+.||.||.-|..++..|..||..+|
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3445555566778888888888888888888888887654
No 112
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.54 E-value=28 Score=37.64 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=22.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 100 KLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 100 ~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
++...-..|..||+.|..++.+|+.|+..|++-+..
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556666666666677777777777765543
No 113
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=56.25 E-value=34 Score=36.13 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=45.7
Q ss_pred hhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEE-EEeeeccccCCChHHHHHHHhh--hhhhhc
Q 004544 398 DAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGIL-CAKASMLLQNVPPALLVRFLRE--HRSEWA 474 (745)
Q Consensus 398 ~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL-~A~tS~wL~pvpp~~lf~FLRd--~RseWd 474 (745)
-|.-+-..++|..... .++|+|-.|...+. |.++ .-++..-++.|+++.++++|.| .|.+||
T Consensus 18 ~~~~~~~~~~W~l~~~--~~gikVy~r~~~~s-------------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd 82 (235)
T cd08872 18 YALEDVGADGWQLFAE--EGEMKVYRREVEED-------------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWE 82 (235)
T ss_pred HHHccCCCCCCEEEEe--CCceEEEEEECCCC-------------CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHH
Confidence 3444556668987753 46799988765321 1222 3677777866999999999998 999999
Q ss_pred cc
Q 004544 475 DF 476 (745)
Q Consensus 475 ~l 476 (745)
..
T Consensus 83 ~~ 84 (235)
T cd08872 83 TT 84 (235)
T ss_pred hh
Confidence 74
No 114
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.16 E-value=46 Score=35.36 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=35.8
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 004544 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (745)
Q Consensus 90 e~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~~ 137 (745)
+-..++.++..|..++..+..+.+..+..+..|+.||++|.+++.+..
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344455666777777777777777777788889999999999888754
No 115
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=53.70 E-value=30 Score=40.14 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=53.1
Q ss_pred ccCCHHHHHHHHHh-Hhc-CCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhH-HHHHHHHHHHHHhhHHHHHhhHH
Q 004544 31 VRYTAEQVEALERV-YSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR-EKQRKEASRLQTVNRKLTAMNKL 107 (745)
Q Consensus 31 tr~T~~Ql~~LE~~-F~~-~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK-~Krrke~~~l~~~n~~L~aen~~ 107 (745)
-++|.+....|.+. |.. ..+|-.+.-++.-++. +-=..|+|.+ ++||++ +.--+.|......
T Consensus 219 L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-----------RRKIrNK~SAQESRrkK----keYid~LE~rv~~ 283 (472)
T KOG0709|consen 219 LVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-----------RRKIRNKRSAQESRRKK----KEYIDGLESRVSA 283 (472)
T ss_pred eeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-----------HHHHHhhhhhHHHHHhH----hhHHHHHhhhhhh
Confidence 35677777777654 222 3456666555555544 1111122211 111111 1122334445566
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 004544 108 LMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (745)
Q Consensus 108 l~ee~~~l~~~~~~L~~EN~~Lk~el~r~~ 137 (745)
..++|.+|++++++|..+|..|-++|.+..
T Consensus 284 ~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 284 FTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred cccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 677888999999999999999999998753
No 116
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.69 E-value=54 Score=32.08 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004544 83 CREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 123 (745)
Q Consensus 83 aK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~ 123 (745)
||.|+-+....++.++..|..+-+.|++|+.++..+...++
T Consensus 68 CR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 68 CRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556555555666555555555555555555544444333
No 117
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.76 E-value=39 Score=29.71 Aligned_cols=42 Identities=29% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 93 RLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 93 ~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.++-+-+.|+..|..|..+..+.+.....|..||..||+|-.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666556666677777777777643
No 118
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.68 E-value=45 Score=29.93 Aligned_cols=43 Identities=30% Similarity=0.263 Sum_probs=29.0
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 92 SRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 92 ~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
..++-+-+.++..|..+.+++..+...-..|..||.+||+|..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455556667777777777766665555667888888887754
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.11 E-value=32 Score=32.10 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=24.8
Q ss_pred eEEeccccc--hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 004544 73 QIKVWFQNR--RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQK 117 (745)
Q Consensus 73 QVKVWFQNR--RaK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~ 117 (745)
+...||++. +.-.+.+++...++.++.+++++|..|+++.+.|+.
T Consensus 16 ~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 16 QYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455788665 333334445555555566666666666555555543
No 120
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.71 E-value=60 Score=28.51 Aligned_cols=43 Identities=33% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 91 ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 91 ~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
-..++.+++.|+.+|..+.+++..|..+.++|+.|-...+..|
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777776655555444
No 121
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.29 E-value=22 Score=39.46 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=22.8
Q ss_pred EEEEecccCC----------CCCCCCccCCccEEecCCCC
Q 004544 560 ELVFAPIDEM----------FPDDGPLLPSGFRIIPLDSK 589 (745)
Q Consensus 560 ~vVyAPvD~~----------~s~~v~LLPSGF~I~Pl~~~ 589 (745)
++|.-||-.+ .+=+|-+=|-|.-|-|.+++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~~ 376 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGSK 376 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCCc
Confidence 5777888776 46677788999999996554
No 122
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=50.26 E-value=21 Score=30.23 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 103 AMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 103 aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.+-+.||+...+|+.+..+|..||..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678889999999999999999999998754
No 123
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=49.68 E-value=3.1e+02 Score=28.22 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHH
Q 004544 385 LRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR 464 (745)
Q Consensus 385 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~ 464 (745)
-.++++.....|-.-. ...++|.... .+.++++|.++...+. | ---++-.-+ |+|++.|++
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~~-------------~--k~~k~e~~i-~~~~~~l~~ 66 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPDI-------------G--KVFRLEVVV-DQPLDNLYS 66 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCCC-------------C--cEEEEEEEe-cCCHHHHHH
Confidence 3445555555554444 2456898763 2356677877554311 1 233445667 899999997
Q ss_pred HHhh---hhhhhccc
Q 004544 465 FLRE---HRSEWADF 476 (745)
Q Consensus 465 FLRd---~RseWd~l 476 (745)
+|.+ .+.+|+..
T Consensus 67 ~l~~d~e~~~~W~~~ 81 (209)
T cd08905 67 ELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHhchhhhceeccc
Confidence 7773 89999975
No 124
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.25 E-value=45 Score=35.66 Aligned_cols=45 Identities=33% Similarity=0.374 Sum_probs=34.2
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 89 KEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 89 ke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
.++..++.+|+.|++.|+.|..++.++..++..++.|.+.|+++.
T Consensus 104 een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 104 EENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 456777788888888888888888888777777777777777654
No 125
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.22 E-value=65 Score=33.66 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=26.7
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 96 ~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.....|+.+|..|++++..++.+...|+.+|..++++..
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447777777777777777777777777777776654
No 126
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=45.31 E-value=1.4e+02 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004544 106 KLLMEENDRLQKQVSQLVCENGYMKQQ 132 (745)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~EN~~Lk~e 132 (745)
..+..+...|..+..+|+.+++.|+.|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555555555555555543
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.99 E-value=65 Score=37.67 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHH
Q 004544 89 KEASRLQTVNRKLTAMNKLLMEEND 113 (745)
Q Consensus 89 ke~~~l~~~n~~L~aen~~l~ee~~ 113 (745)
++...+..+|+.|+++|+.|++...
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555666777777777766443
No 128
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=43.49 E-value=80 Score=28.93 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=57.7
Q ss_pred eeEEEeChhHHHHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEe
Q 004544 216 CGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCER 295 (745)
Q Consensus 216 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvDv 295 (745)
+-.+...+.+|.++|.|.+.|.+-+|.++-+..+..|.-.. +....+ .|+ ..|.-...+|...-++..+++.-.
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEA----TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITGE 79 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEE----EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEEE
Confidence 34466778999999999999999998776555544221100 111111 222 123222345544333444433321
Q ss_pred ecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeecc
Q 004544 296 SLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (745)
Q Consensus 296 Sld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d 343 (745)
.-.. . .+. ..=--+-+.+. +|+|+|||.-+++..
T Consensus 80 ~~~~---~-------~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~ 113 (144)
T cd05018 80 GKGG---A-------GFV---KGTARVTLEPD-GGGTRLTYTADAQVG 113 (144)
T ss_pred EcCC---C-------ceE---EEEEEEEEEec-CCcEEEEEEEEEEEc
Confidence 1110 0 010 11123457777 677999999999854
No 129
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=43.16 E-value=42 Score=36.62 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHhhcc
Q 004544 99 RKLTAMNKLLMEENDR---LQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 99 ~~L~aen~~l~ee~~~---l~~~~~~L~~EN~~Lk~el~r 135 (745)
..+..+|+.+++++.+ .+.+.++|+.||.+||+.|.-
T Consensus 69 ~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 69 KDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344555556655543 355667899999999999874
No 130
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.09 E-value=61 Score=35.61 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004544 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVC 124 (745)
Q Consensus 82 RaK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~ 124 (745)
|-|.|||.+...+..+-..|...|+.||+...++++|++.||.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666667777888888888888888888776663
No 131
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=41.94 E-value=68 Score=32.62 Aligned_cols=67 Identities=15% Similarity=0.397 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHH
Q 004544 387 TFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFL 466 (745)
Q Consensus 387 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FL 466 (745)
++.|.|..-+.. .++|.... ..++|+|..++..+. .+ -..++..-+ |.+|+.+|++|
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~------------~~--~~~k~~~~i-~~~~~~v~~~l 65 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEF------------TG--HLYRAEGIV-DALPEKVIDVI 65 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCC------------CC--EEEEEEEEE-cCCHHHHHHHH
Confidence 444555544442 27899874 336899998754311 11 123566677 89999999999
Q ss_pred hh----hhhhhccc
Q 004544 467 RE----HRSEWADF 476 (745)
Q Consensus 467 Rd----~RseWd~l 476 (745)
.+ .|.+||..
T Consensus 66 ~d~~~~~r~~Wd~~ 79 (206)
T cd08867 66 IPPCGGLRLKWDKS 79 (206)
T ss_pred HhcCcccccccccc
Confidence 96 79999964
No 132
>PF15058 Speriolin_N: Speriolin N terminus
Probab=40.66 E-value=43 Score=34.74 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 004544 100 KLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (745)
Q Consensus 100 ~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~~ 137 (745)
-++...+++..||++|+|++. |-.||.+||.-|...+
T Consensus 9 GlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 355667778888888888875 6669999998765543
No 133
>PHA03155 hypothetical protein; Provisional
Probab=39.97 E-value=30 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 112 NDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 112 ~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
.++|.+++++|+.||..||+++-+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999976
No 134
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.85 E-value=71 Score=32.30 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=13.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004544 103 AMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (745)
Q Consensus 103 aen~~l~ee~~~l~~~~~~L~~EN~~Lk~e 132 (745)
.+|+.+++++.+|+.+...|..||..|+++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 135
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=39.34 E-value=32 Score=33.10 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccCC
Q 004544 112 NDRLQKQVSQLVCENGYMKQQLRTAP 137 (745)
Q Consensus 112 ~~~l~~~~~~L~~EN~~Lk~el~r~~ 137 (745)
+++|.+++++|++||..||.++.+..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46788999999999999999998743
No 136
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=39.24 E-value=1.6e+02 Score=26.54 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=27.0
Q ss_pred eeEEEeChhHHHHHhcCccchhhhCCcceEeeeec
Q 004544 216 CGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFP 250 (745)
Q Consensus 216 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~ 250 (745)
+-.|...+.++-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 34466678899999999999998888776555544
No 137
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.70 E-value=1.1e+02 Score=26.57 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHHHH-------HHHHHHHHhHHHHHhhc
Q 004544 102 TAMNKLLMEENDRLQK-------QVSQLVCENGYMKQQLR 134 (745)
Q Consensus 102 ~aen~~l~ee~~~l~~-------~~~~L~~EN~~Lk~el~ 134 (745)
...++.|+.|.+.... +..+|+.||..|++||+
T Consensus 25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 25 EIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445544444433 34456666666666654
No 138
>PHA03162 hypothetical protein; Provisional
Probab=38.66 E-value=31 Score=33.67 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 112 NDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 112 ~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+++|.+++++|++||..||+++-+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999965
No 139
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.03 E-value=51 Score=28.03 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 108 LMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 108 l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
++.+...++++..+++.||..|++|+++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554
No 140
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=37.60 E-value=49 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHHHHHhhcc
Q 004544 114 RLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 114 ~l~~~~~~L~~EN~~Lk~el~r 135 (745)
...+.+.+|..||..|+.||.+
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999998875
No 141
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.28 E-value=89 Score=33.58 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=27.8
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 94 LQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 94 l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
.+..|..|..+......+...|+.++..|+..|-.|.+.+-=
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666677777777778888888777653
No 142
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.72 E-value=49 Score=30.90 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
..++++...++.+.++|+.+|+.|++|+++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666666554
No 143
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=36.56 E-value=1.3e+02 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 004544 108 LMEENDRLQKQVSQLVCENGYMK 130 (745)
Q Consensus 108 l~ee~~~l~~~~~~L~~EN~~Lk 130 (745)
..+++.+|..++..|+.|+..++
T Consensus 45 a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555555544443
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.01 E-value=95 Score=32.49 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 105 NKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 105 n~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
...|+++|.+|..+++.++.|+..|+.|++.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555543
No 145
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.95 E-value=92 Score=32.97 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhcc
Q 004544 114 RLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 114 ~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+++.+..+|..||+.|+++++.
T Consensus 190 ~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 190 GLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HcccHHHHHHHHHHHHHHHHhc
Confidence 3344445666666666666653
No 146
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=34.26 E-value=2.5e+02 Score=34.76 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=54.5
Q ss_pred CCChHHHHHHHhh---hhhhhcccccchhhhhhhhcCccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcc
Q 004544 456 NVPPALLVRFLRE---HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQ 532 (745)
Q Consensus 456 pvpp~~lf~FLRd---~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~~~vsvlr~~~~~~~~ 532 (745)
+.+|+.||++|-+ .|.|||.+ +++ | +.|-+| +...+|.--++...-.
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~---------~~~----------~-----~vIE~I----D~htdI~Y~~~~~~~~-- 285 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS---------FQY----------G-----SLVEEV----DGHTAILYHRLQLDWF-- 285 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc---------ccc----------e-----EEEEEe----cCCeEEEEEEeccccc--
Confidence 7899999999973 99999975 111 2 333333 3333444233321100
Q ss_pred cccccCCceEEEeeccCCCCCCCCceeEEE-EecccCCC----CCCC--CccCCccEEecCC
Q 004544 533 EDAFVSRDIHLLQICSGVDENAVGACSELV-FAPIDEMF----PDDG--PLLPSGFRIIPLD 587 (745)
Q Consensus 533 ~~~~~~~~~~lLQe~s~~De~~~Gscs~vV-yAPvD~~~----s~~v--~LLPSGF~I~Pl~ 587 (745)
-.-+-+||-.++.- +--+ -.| +|+| |-+|.-.. +.+| -+-|+||.|.|+.
T Consensus 286 ~~~ispRDFV~~Ry-wrr~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~ 342 (719)
T PLN00188 286 PMFVWPRDLCYVRY-WRRN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLK 342 (719)
T ss_pred cCccCcceeEEEEE-EEEc--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECC
Confidence 01244678777776 2233 355 3544 55555532 2332 3779999999964
No 147
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=33.85 E-value=1.5e+02 Score=28.72 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=60.4
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhh--hccccccCCceeeEEeeeeeccCCcEEE
Q 004544 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQA--YAPTTLAPARDFWTLRYTTTLDNGSLVV 292 (745)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~--~v~SPLvp~Re~~fLRYckql~~G~waV 292 (745)
.+-.|.-.+..+-+++-|..+|-+.||.+.-..++..|..|.. +.+ ....+ ..+.-|.=|.+ +....|-|
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcEE
Confidence 3456667899999999999999999998765555555443211 223 22221 12222322333 33344533
Q ss_pred EEeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeecc
Q 004544 293 CERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (745)
Q Consensus 293 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d 343 (745)
.-..... +| | ..+=-...+++.++| |+|++.-+++..
T Consensus 77 ~~~~~~~---~p-------~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 77 RARRVET---GP-------F---AYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEecC---CC-------c---ceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 3112211 11 0 112233456888877 999999988865
No 148
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=33.84 E-value=76 Score=28.99 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred HhhHHHHHHHHHHHH------HHHHHHHHhHHHHHhhccC
Q 004544 103 AMNKLLMEENDRLQK------QVSQLVCENGYMKQQLRTA 136 (745)
Q Consensus 103 aen~~l~ee~~~l~~------~~~~L~~EN~~Lk~el~r~ 136 (745)
.+++.|++|++-|+. ++.+...||.+|++|+.|.
T Consensus 24 ~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 334555555544433 3456778999999988873
No 149
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.74 E-value=1.5e+02 Score=25.77 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
|-..+..|+++|..|..++..+..|++.|++..
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555443
No 150
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.02 E-value=2.6e+02 Score=25.36 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=61.9
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 004544 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (745)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvD 294 (745)
.+-.|...+.++.+.|.|.+.|.+.+|.+.-+.++..|.+|.-.. .+.-....+.++.+.++|...- +..+ -..
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~i-~~~ 79 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM----VRIGVGAYGIKDTYALEYTWDG-AGSV-SWT 79 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE----EEEEEeeeeEEEEEEEEEEEcC-CCcE-EEE
Confidence 455677789999999999999999999886666655544432111 1111122244555556665532 2221 111
Q ss_pred eecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeecc
Q 004544 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (745)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d 343 (745)
..++ .+ +.... .-+-+.+.++ +|.|||.-+++..
T Consensus 80 -~~~~---~~-------~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~ 113 (140)
T cd07819 80 -LVEG---EG-------NRSQE---GSYTLTPKGD-GTRVTFDLTVELT 113 (140)
T ss_pred -Eecc---cc-------eeEEE---EEEEEEECCC-CEEEEEEEEEEec
Confidence 1111 00 11111 2356788877 5999999999874
No 151
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.75 E-value=1.2e+02 Score=35.65 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 90 e~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+...++..-++++.+.+.+......++..++.|..||+.|+++++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566666666666677888888999999999999864
No 152
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=31.67 E-value=1.5e+02 Score=30.94 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Q 004544 80 NRRCREKQRKEASRLQTVNRKLTAMNKLLMEEN 112 (745)
Q Consensus 80 NRRaK~Krrke~~~l~~~n~~L~aen~~l~ee~ 112 (745)
|||.+.- -.+-..++..|.+|+.+|+.|++..
T Consensus 47 NrrlQ~h-l~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQH-LNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 2344566677777777777776554
No 153
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.03 E-value=64 Score=36.05 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=11.1
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHH
Q 004544 91 ASRLQTVNRKLTAMNKLLMEENDRL 115 (745)
Q Consensus 91 ~~~l~~~n~~L~aen~~l~ee~~~l 115 (745)
...++.||++|++||..|+.+.++|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 154
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.55 E-value=1.4e+02 Score=30.55 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 90 e~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
....+.+.|.-|+...+..+.+|+.|..++++|..+-.++++||.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666655
No 155
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.45 E-value=1e+02 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 108 LMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 108 l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+..+..+++.+..++..||..|+.|+.+
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566666666666554
No 156
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.82 E-value=2.2e+02 Score=25.71 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=27.5
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 94 LQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 94 l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+..+-..|+..-..|....+..+.+..+|+.||..|++=+..
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555556666666677777888888888877664
No 157
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=28.72 E-value=98 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=25.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQ 131 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~ 131 (745)
.+.|-+.||+...+|.....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678888888888888899999988884
No 158
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.63 E-value=1.6e+02 Score=28.17 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 99 ~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
-.+.++-..|++-..++-.+...|++||..||+.|..
T Consensus 18 ~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 18 GVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3455666777777777777788899999999988875
No 159
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=27.75 E-value=1.7e+02 Score=27.18 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=59.4
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 004544 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (745)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVvD 294 (745)
.+-.|...+..+.+++-|.+.|.+.+|.++-..++..+.++ ..+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 34556667888999999999999999877554544433322 11222232221 133333 33332 123232 11
Q ss_pred eecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeecc
Q 004544 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (745)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d 343 (745)
.++++ + | +.+=--..+++.++|.|.|+|.-|++..
T Consensus 74 ~~~~g----~-------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~ 108 (138)
T cd07813 74 ELVDG----P-------F---KHLEGEWRFKPLGENACKVEFDLEFEFK 108 (138)
T ss_pred EecCC----C-------h---hhceeEEEEEECCCCCEEEEEEEEEEEC
Confidence 22222 1 0 1122345688999999999999999876
No 160
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.62 E-value=1.2e+02 Score=28.53 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+...-..+-++...|+.++..|..||+.|+-|.+.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666777777777777777777654
No 161
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.24 E-value=1.4e+02 Score=34.99 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcccccccccc
Q 004544 691 LTLAHWICQSYSYHLGAELL 710 (745)
Q Consensus 691 ~~l~~~i~~sy~~~~g~~l~ 710 (745)
...+.|+-+-|--.|.+-.+
T Consensus 425 ~e~adW~~krygqsFdAVyV 444 (472)
T TIGR03752 425 DEVADWVNKRYGQSFDAVYV 444 (472)
T ss_pred HHHHHHHHHHhhccccEEEe
Confidence 34677777777666655443
No 162
>PRK10724 hypothetical protein; Provisional
Probab=26.12 E-value=2.6e+02 Score=27.69 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=61.8
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCcceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEE
Q 004544 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVC 293 (745)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~G~~G~lqLm~aE~~v~SPLvp~Re~~fLRYckql~~G~waVv 293 (745)
+.+.+|.-.+.++.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- .++-|.-|+.-. .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556788889999999999999999988855433333333233 23444332222 233333333332 333 3222
Q ss_pred EeecCCCCCCCCCCCccccccccccCcceeeeecCCCccEEEEEEeeecc
Q 004544 294 ERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (745)
Q Consensus 294 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~SkVtwVeH~e~d 343 (745)
..+++ | . +.+=.-.-++|.++|.|+|+.--++|+.
T Consensus 90 -~~~~G----p----F------~~l~g~W~f~p~~~~~t~V~~~l~fef~ 124 (158)
T PRK10724 90 -QLVDG----P----F------KKLIGGWKFTPLSQEACRIEFHLDFEFT 124 (158)
T ss_pred -EecCC----C----h------hhccceEEEEECCCCCEEEEEEEEEEEc
Confidence 22232 2 1 2233444577888888999998888854
No 163
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=25.76 E-value=54 Score=26.32 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=13.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 98 n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
|..+-..|..+.-....++++..+|..||..||++.
T Consensus 9 n~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 9 NRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 556666778888888899999999999999999875
No 164
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.42 E-value=1.1e+02 Score=35.40 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.9
Q ss_pred Eecc---ccchhHHHH
Q 004544 75 KVWF---QNRRCREKQ 87 (745)
Q Consensus 75 KVWF---QNRRaK~Kr 87 (745)
-.|| |||.+|.+-
T Consensus 229 gcw~ay~Qnk~akehv 244 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHV 244 (575)
T ss_pred hhhhhhhhhhHHHHHH
Confidence 4788 888888764
No 165
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=25.42 E-value=2.2e+02 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=25.1
Q ss_pred eeEEEeChhHHHHHhcCccchhhhCCc--ceEee
Q 004544 216 CGLVSLEPTKIAEILKDRPSWFRDCRS--LEVFT 247 (745)
Q Consensus 216 ~glV~m~~~~LVe~lmD~~~W~~~f~~--i~vl~ 247 (745)
+-.|.-.+..+-++|-|.++|-+..|. ++++.
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 455667889999999999999997784 44443
No 166
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.06 E-value=2.1e+02 Score=29.06 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 93 RLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 93 ~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.++.+|..++.++..|++.++.|+++...|..++..+++++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666665554
No 167
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.97 E-value=2.4e+02 Score=32.72 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 90 e~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
..+.+..++..++++.+.++..+...+.++.+|+.||..|.+|.-+
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888888888888888888765
No 168
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=23.81 E-value=1.3e+02 Score=33.82 Aligned_cols=38 Identities=21% Similarity=0.064 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 93 RLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 93 ~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.+..+|+.|+.+|..|+.++.+ .++++.||..|++.+.
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKS----YEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 3445555555555555544433 2346678887776554
No 169
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.59 E-value=1.9e+02 Score=30.09 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=18.2
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 96 ~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
.++.+|.+.++.+.+++..|..+++.|..||..|..+.+
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 334444444444444444444444455555555544444
No 170
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.46 E-value=1.4e+02 Score=26.87 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 004544 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (745)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r~~ 137 (745)
..+..+..+++++..+|..||.+|+-|..+.+
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444466667777777777777777776543
No 171
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.04 E-value=6.3e+02 Score=29.16 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 106 KLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
..|+++.+.|.+++.+.+-|-+.|+.+++
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665
No 172
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=22.88 E-value=44 Score=35.34 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=38.6
Q ss_pred CCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeeccccCCChHHHHHHHhh--hhhhhccc
Q 004544 402 GFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (745)
Q Consensus 402 ~s~~~~W~~l~~~g~~dVrV~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (745)
+-.+.+|..+-.. .+++|....-+. .| +=...|- .-+.-++|..|+||+-| -|.+||++
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~~-~g----------~~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~ 85 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRPK-TG----------LYEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDM 85 (219)
T ss_pred cCcccchhhhccc--CCceEEEEcccC-CC----------CEEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHH
Confidence 5677899887532 355666521111 11 1134554 33458999999999998 89999987
No 173
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.97 E-value=2.6e+02 Score=26.44 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=20.1
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004544 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 96 ~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el 133 (745)
.....+......+.++++++....+++..|...||+|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555555555555555555555553
No 174
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=21.88 E-value=20 Score=42.58 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCCCCCcccCCHHHHHHHHHh-HhcCCCCCHHHHHHHHHhcCccc-----CCCCceEEeccccchhHHHHHH
Q 004544 24 QLDNGKYVRYTAEQVEALERV-YSECPKPSSLRRQQLIRECPILS-----NIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 24 ~~~rrkRtr~T~~Ql~~LE~~-F~~~p~Ps~~~R~eLA~eL~~~~-----gL~~rQVKVWFQNRRaK~Krrk 89 (745)
...|+++.++-.+|..++... |..+.++......+--.++ |+ ..+.+.|++||.|||.++|+.+
T Consensus 689 ~~pk~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~--~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 689 DLPKKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEE--LLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred cccHHHHHHhhhcceeecchhheecccCchhHHHHHhhHHh--hcchhhhhhhhcchHHHHHHHHHHHhhhh
No 175
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.86 E-value=1.2e+02 Score=30.78 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 004544 113 DRLQKQVSQLVCENGYMKQQL 133 (745)
Q Consensus 113 ~~l~~~~~~L~~EN~~Lk~el 133 (745)
+.|..++|+|+.|-..||+||
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555
No 176
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.44 E-value=1.9e+02 Score=27.51 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 004544 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (745)
Q Consensus 101 L~aen~~l~ee~~~l~~~~~~L~~EN~~Lk~el~r 135 (745)
+...-..+-+++..|+.++..|..||+.|+-|.+.
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666667777777777766553
No 177
>PF14645 Chibby: Chibby family
Probab=21.21 E-value=2.5e+02 Score=26.84 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.9
Q ss_pred Eeccccch
Q 004544 75 KVWFQNRR 82 (745)
Q Consensus 75 KVWFQNRR 82 (745)
.++|++-+
T Consensus 51 ~l~F~dG~ 58 (116)
T PF14645_consen 51 TLVFEDGQ 58 (116)
T ss_pred EEEEECCE
Confidence 34555543
No 178
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.97 E-value=2.3e+02 Score=28.65 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 004544 104 MNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (745)
Q Consensus 104 en~~l~ee~~~l~~~~~~L~~EN~~Lk~el~ 134 (745)
+++...+|.+++.+++.+...|...||.|.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544
No 179
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.92 E-value=1e+02 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhHhcCC--CCCHHHHHHHHHhcCcccCCCCc
Q 004544 33 YTAEQVEALERVYSECP--KPSSLRRQQLIRECPILSNIEPK 72 (745)
Q Consensus 33 ~T~~Ql~~LE~~F~~~p--~Ps~~~R~eLA~eL~~~~gL~~r 72 (745)
+|+.|.+.|...|..-- +|-...-.+||.+| |+++.
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~s 38 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKS 38 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHH
Confidence 58899999999998764 47777889999999 98874
No 180
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=20.27 E-value=1.3e+02 Score=27.89 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=20.5
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEeccccchhHHHHHHHHH
Q 004544 38 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (745)
Q Consensus 38 l~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWFQNRRaK~Krrke~~ 92 (745)
+....-.|+.+|||...--.+ ++ .|||.|||+++.+-
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~-aR-----------------RnRRRRWR~rq~QI 50 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQ-AR-----------------RNRRRRWRARQRQI 50 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccc-cc-----------------cchhhhHHHHHHHH
Confidence 344556689999998552111 22 38899999877653
No 181
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.11 E-value=24 Score=29.81 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=28.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCcccCCCCceEEecc
Q 004544 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWF 78 (745)
Q Consensus 28 rkRtr~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gL~~rQVKVWF 78 (745)
++|.+||+++...+-..+.. ......++|+++ |+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~----gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREY----GISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHH----TS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeeccc----ccccccccHHH
Confidence 45679999998877666622 235788999999 99999988774
No 182
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.08 E-value=3e+02 Score=26.00 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=23.4
Q ss_pred ccchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 004544 79 QNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCEN 126 (745)
Q Consensus 79 QNRRaK~Krrke~~~l~~~n~~L~aen~~l~ee~~~l~~~~~~L~~EN 126 (745)
|||-.+. -+......-+.|.+...+...+.++.+.+..+..+...+.
T Consensus 57 QNRq~~~-dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 57 QNRQAAR-DRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred hhHhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6665432 2222222233455666666666666666655554444443
Done!