Query 004544
Match_columns 745
No_of_seqs 300 out of 1463
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:28:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004544.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1849-1853//hhsearch_pdb/004544hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 1.0 1 1 150.2 14.6 186 160-363 20-215 (231)
2 2pso_A STAR-related lipid tran 1.0 1 1 120.5 7.9 178 166-358 32-213 (237)
3 3a01_A Homeodomain-containing 1.0 1 1 119.8 3.9 65 23-91 14-78 (93)
4 1au7_A Protein PIT-1, GHF-1; c 1.0 1 1 119.4 -0.1 62 23-88 84-145 (146)
5 2xsd_C POU domain, class 3, tr 1.0 1 1 118.0 0.8 63 24-90 97-159 (164)
6 1e3o_C Octamer-binding transcr 1.0 1 1 118.0 1.3 61 24-88 99-159 (160)
7 2dmt_A Homeobox protein BARH-l 1.0 1 1 117.3 2.7 62 24-89 15-76 (80)
8 2r5y_A Homeotic protein sex co 1.0 1 1 117.2 1.4 63 23-89 25-87 (88)
9 1nk2_P Homeobox protein VND; h 1.0 1 1 116.9 4.8 65 23-91 6-70 (77)
10 2kt0_A Nanog, homeobox protein 1.0 1 1 116.8 0.5 62 24-89 20-81 (84)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=150.16 Aligned_cols=186 Identities=18% Similarity=0.240 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCEEECEEEEEEECHHHHHHHHCC-----C
Q ss_conf 712039999999999999844999445766999988774011003-6788520001034897372679998329-----4
Q 004544 160 NPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKD-----R 233 (745)
Q Consensus 160 ~~~~l~~~A~~am~Ell~~a~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eAsR~~glV~m~~~~LVe~lmD-----~ 233 (745)
.++.+.++|+++++|++.+++.+ ..|..... +.| +.++.. ..+..+.+.|+.|+|...+..+++.||+ +
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r 94 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLR 94 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEE-CCC---EEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCHH
T ss_conf 58999999999999999985399-99989883-798---79999825779984899999988999999999876194145
Q ss_pred CCHHHHCCCCEEEEEECCCCCCHHHHHHHHHH--CCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 30543177645753202799527999997630--4664567821249953101069829999852489999999987433
Q 004544 234 PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAY--APTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQ 311 (745)
Q Consensus 234 ~~W~~~f~~~~vl~~~~~G~~G~lqLm~aEl~--v~SPLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~ 311 (745)
.+|-..|...++|..+... .. ++| ++. .+++++++|||.++||+++.++|.|+|+.+|++. |..|+...
T Consensus 95 ~~Wd~~~~~~~vle~i~~~--~~--i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~ 165 (231)
T 2r55_A 95 VKWDENVTGFEIIQSITDT--LC--VSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPG 165 (231)
T ss_dssp HHHCTTCSEEEEEEECSSS--EE--EEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTT
T ss_pred HHHCCCCCEEEEEEECCCC--EE--EEE-EEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC----CCCCCCCC
T ss_conf 4444465305999981898--79--999-983565689657876799999999399989999986568----88999999
Q ss_pred CCCCCCCCCCEEEEECC--CCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 22210158631564369--99518999982312456756321000025399997
Q 004544 312 FVRAEMLPSGCLIRPCD--GGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQ 363 (745)
Q Consensus 312 ~~r~~rlPSGclIq~~~--nG~SkVtwVeH~e~d~~~v~el~RpL~~Sg~a~Aq 363 (745)
++|++.++|||+|||++ +|.|+|||+.|+|..-| +| +.++++....+.
T Consensus 166 ~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~ 215 (231)
T 2r55_A 166 FVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSM 215 (231)
T ss_dssp CEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCC-CC---HHHHHHHHHHHH
T ss_conf 787998723899998379998189999998278987-63---999998876759
No 2
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=120.54 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEECEEEEEEECHHHHH-HHHCCCCCHHHHCCC
Q ss_conf 999999999999844999445766999988774011003--67885200010348973726799-983294305431776
Q 004544 166 SIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI--SQSCSGVAARACGLVSLEPTKIA-EILKDRPSWFRDCRS 242 (745)
Q Consensus 166 ~~A~~am~Ell~~a~~~~plWi~~~g~~~g~~~~g~~~~--~~~~~~eAsR~~glV~m~~~~LV-e~lmD~~~W~~~f~~ 242 (745)
.+++++..|+++.+.....-|..... +.| +.+.-. +.+...-.-|..+.|...+..++ ++|.|+.+|-..|..
T Consensus 32 ~~l~~~~~~ll~~~~~~~~gW~~~~~-~~g---i~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~ 107 (237)
T 2pso_A 32 TYLNHLIQGLQKEAKEKFKGWVTCSS-TDN---TDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQ 107 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCSCEEECC-SSS---CEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEC-CCC---EEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCE
T ss_conf 99999999999986458899879723-798---69999986899971799999998689399999998536668754235
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEE-CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 457532027995279999976304664567821249953101-0698299998524899999999874332221015863
Q 004544 243 LEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSG 321 (745)
Q Consensus 243 ~~vl~~~~~G~~G~lqLm~aEl~v~SPLvp~Re~~fLRYckq-l~~G~wvVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 321 (745)
.++|+.+.... .++|..+..|.| ++.|||.++|+.++ +++|.++||-.|++. +..|+. .++|++.+++|
T Consensus 108 ~~vle~id~~~----~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g 177 (237)
T 2pso_A 108 WKVVETLDRQT----EIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQ 177 (237)
T ss_dssp CEEEEEEETTE----EEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEE
T ss_pred EEEEEECCCCC----EEEEEEECCCCC-CCCEEEEEEEEEEEECCCCEEEEEEECCCC----CCCCCC-CCEEEEEECCE
T ss_conf 99999839993----999998027888-677089999999998799979999981358----888999-96989995568
Q ss_pred EEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 1564369995189999823124567563210000253
Q 004544 322 CLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESS 358 (745)
Q Consensus 322 clIq~~~nG~SkVtwVeH~e~d~~~v~el~RpL~~Sg 358 (745)
++|+|+++|.|+|||+-|+|.. ..+|.-+..++...
T Consensus 178 ~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~~ 213 (237)
T 2pso_A 178 YLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGHL 213 (237)
T ss_dssp EEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHHH
T ss_pred EEEEECCCCCEEEEEEEEECCC-CCCHHHHHHHHHHH
T ss_conf 9999789997899999996799-78648999888799
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=119.84 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 577898853379889999999571299999889999998668335998752874154223699999888
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~e~ 91 (745)
....+++|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98889899687999999999999707996999999999994----979543514117552033565378
No 4
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=1.00 E-value=1 Score=119.41 Aligned_cols=62 Identities=34% Similarity=0.530 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 577898853379889999999571299999889999998668335998752874154223699999
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (745)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr 88 (745)
....+++|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCCHHHCHHHHHHHHHHHHCC
T ss_conf 77788887676499999999999976998999999999996----988423204217665455215
No 5
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=117.97 Aligned_cols=63 Identities=30% Similarity=0.467 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 7789885337988999999957129999988999999866833599875287415422369999988
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (745)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~e 90 (745)
...+++|++||..|+..||..|..++||+...|.+||.++ +|+++||++||||||+|+|+.+.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC
T ss_pred CCCCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 6689885304699999999998048999999999999997----97854421662776577762247
No 6
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=1.00 E-value=1 Score=117.96 Aligned_cols=61 Identities=31% Similarity=0.438 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 77898853379889999999571299999889999998668335998752874154223699999
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (745)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr 88 (745)
...+++|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_conf 8888575236899999999998615999999999999997----978677068508866002005
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=117.32 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 778988533798899999995712999998899999986683359987528741542236999998
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~ 89 (745)
...+++|++||..|+..||..|..++||+...|.+||.++ +|+++||++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCCHHHEEECCHHHHHHHHCCC
T ss_conf 8899899888999999999999806999879999999996----9888991016187988762006
No 8
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=1.00 E-value=1 Score=117.15 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 5778988533798899999995712999998899999986683359987528741542236999998
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~ 89 (745)
.+..+++|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99989899786999999999999516998999999999996----9698996698488888767513
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=1.00 E-value=1 Score=116.87 Aligned_cols=65 Identities=28% Similarity=0.453 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 577898853379889999999571299999889999998668335998752874154223699999888
Q 004544 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (745)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~e~ 91 (745)
....+++|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.+..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHCCHHHHHCC
T ss_conf 99999899667999999999998626997999999999994----989899889727753201133214
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=116.81 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 778988533798899999995712999998899999986683359987528741542236999998
Q 004544 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (745)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~p~Ps~~~R~eLA~eL~~~~gLs~rQVKVWFQNRRaK~Kkr~ 89 (745)
...+++|+.||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8999899888999999999999807998999999999993----9989998999999999887775
Done!