Query 004546
Match_columns 745
No_of_seqs 376 out of 2384
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 01:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 7E-198 1E-202 1605.7 50.5 666 8-702 2-675 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 1E-194 3E-199 1661.9 70.8 705 7-717 3-712 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 2E-130 5E-135 1099.4 48.1 470 231-717 19-490 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 2E-127 4E-132 1077.0 48.5 453 261-717 15-481 (554)
5 PRK14703 glutaminyl-tRNA synth 100.0 1E-123 2E-128 1083.2 48.8 447 261-710 17-477 (771)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 4E-123 8E-128 1040.8 43.7 438 275-717 1-451 (522)
7 PLN03233 putative glutamate-tR 100.0 1E-120 2E-125 1019.6 43.6 428 270-715 7-438 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 4E-119 9E-124 1015.9 45.7 436 270-716 48-486 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 4E-117 9E-122 1029.7 46.2 429 271-712 210-643 (722)
10 PRK04156 gltX glutamyl-tRNA sy 100.0 5E-113 1E-117 967.6 51.7 417 272-713 99-522 (567)
11 TIGR00463 gltX_arch glutamyl-t 100.0 4E-111 9E-116 950.8 44.1 425 271-715 90-517 (560)
12 KOG1147 Glutamyl-tRNA syntheta 100.0 4E-108 8E-113 892.2 41.2 434 270-717 196-634 (712)
13 COG0008 GlnS Glutamyl- and glu 100.0 5.5E-87 1.2E-91 743.7 7.9 400 275-702 10-422 (472)
14 PLN02627 glutamyl-tRNA synthet 100.0 3.8E-74 8.2E-79 645.1 24.5 320 266-611 37-384 (535)
15 cd00807 GlnRS_core catalytic c 100.0 1.8E-73 3.9E-78 585.9 23.7 238 274-583 1-238 (238)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.2E-74 2.5E-79 620.3 14.6 306 274-595 1-314 (314)
17 PRK12410 glutamylglutaminyl-tR 100.0 1.7E-73 3.7E-78 629.8 22.7 289 276-597 1-304 (433)
18 PRK12558 glutamyl-tRNA synthet 100.0 5.6E-72 1.2E-76 620.2 23.2 294 274-597 2-310 (445)
19 cd09287 GluRS_non_core catalyt 100.0 1.4E-70 3.1E-75 566.0 23.7 238 274-583 1-240 (240)
20 KOG1149 Glutamyl-tRNA syntheta 100.0 3.6E-71 7.8E-76 593.1 19.9 298 273-597 32-352 (524)
21 PRK01406 gltX glutamyl-tRNA sy 100.0 1.3E-69 2.8E-74 609.1 24.6 299 272-597 2-321 (476)
22 PRK14895 gltX glutamyl-tRNA sy 100.0 1.9E-69 4E-74 606.3 22.1 299 272-611 2-330 (513)
23 PRK05710 glutamyl-Q tRNA(Asp) 100.0 8.5E-69 1.8E-73 569.0 25.2 272 272-590 3-298 (299)
24 TIGR00464 gltX_bact glutamyl-t 100.0 1.4E-68 3.1E-73 600.1 24.3 298 274-597 1-312 (470)
25 TIGR03838 queuosine_YadB gluta 100.0 2.9E-67 6.3E-72 551.5 21.5 260 275-571 1-270 (272)
26 cd00418 GlxRS_core catalytic c 100.0 1.3E-61 2.7E-66 497.4 17.2 222 274-597 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 3.7E-58 8.1E-63 474.7 16.3 223 274-597 1-233 (239)
28 PF04558 tRNA_synt_1c_R1: Glut 100.0 5.2E-49 1.1E-53 385.6 14.7 162 8-169 2-164 (164)
29 COG0215 CysS Cysteinyl-tRNA sy 99.9 2.5E-27 5.4E-32 262.1 11.0 252 280-573 29-315 (464)
30 PF01406 tRNA-synt_1e: tRNA sy 99.9 7E-26 1.5E-30 240.0 10.4 251 280-572 15-298 (300)
31 TIGR00435 cysS cysteinyl-tRNA 99.9 8E-24 1.7E-28 238.6 18.4 254 279-574 27-313 (465)
32 PF03950 tRNA-synt_1c_C: tRNA 99.9 1.3E-24 2.8E-29 215.9 9.7 126 581-718 1-129 (174)
33 PRK00260 cysS cysteinyl-tRNA s 99.9 2.2E-23 4.7E-28 235.2 19.9 261 272-574 21-314 (463)
34 PLN02946 cysteine-tRNA ligase 99.9 5.4E-24 1.2E-28 242.6 12.4 253 280-574 87-371 (557)
35 PRK14534 cysS cysteinyl-tRNA s 99.9 2.3E-23 4.9E-28 234.2 15.6 249 280-573 28-327 (481)
36 PRK14536 cysS cysteinyl-tRNA s 99.9 6.5E-23 1.4E-27 231.4 18.4 250 280-574 30-328 (490)
37 PRK12418 cysteinyl-tRNA synthe 99.9 9.6E-24 2.1E-28 232.0 10.6 257 280-574 16-310 (384)
38 TIGR03447 mycothiol_MshC cyste 99.9 1.8E-23 4E-28 231.0 9.9 257 280-573 43-336 (411)
39 PRK14535 cysS cysteinyl-tRNA s 99.9 5.5E-22 1.2E-26 228.2 18.5 248 280-573 255-555 (699)
40 PTZ00399 cysteinyl-tRNA-synthe 99.9 3E-22 6.5E-27 233.4 10.1 269 273-574 58-363 (651)
41 KOG2007 Cysteinyl-tRNA synthet 99.8 2.4E-21 5.1E-26 213.0 9.8 263 259-562 39-342 (586)
42 cd00671 ArgRS_core catalytic c 99.7 2.8E-17 6.1E-22 167.7 14.6 184 275-515 2-212 (212)
43 PRK11893 methionyl-tRNA synthe 99.6 2.9E-14 6.3E-19 162.3 19.6 272 275-575 4-349 (511)
44 PRK01611 argS arginyl-tRNA syn 99.6 9.2E-15 2E-19 167.1 14.0 227 272-572 110-385 (507)
45 PF04557 tRNA_synt_1c_R2: Glut 99.6 5.6E-16 1.2E-20 136.9 2.3 82 170-267 1-84 (84)
46 cd00668 Ile_Leu_Val_MetRS_core 99.5 1.5E-12 3.2E-17 140.0 17.4 244 277-557 5-305 (312)
47 cd00802 class_I_aaRS_core cata 99.4 2.2E-13 4.8E-18 130.3 8.0 133 276-514 1-143 (143)
48 TIGR00398 metG methionyl-tRNA 99.3 2.2E-11 4.7E-16 140.0 17.4 94 275-368 2-115 (530)
49 cd00814 MetRS_core catalytic c 99.3 8E-11 1.7E-15 127.3 18.3 94 275-368 3-116 (319)
50 cd00672 CysRS_core catalytic c 99.2 5.3E-11 1.1E-15 122.3 11.1 68 279-346 26-112 (213)
51 cd00812 LeuRS_core catalytic c 99.2 1.2E-10 2.6E-15 125.8 12.6 93 276-368 4-118 (314)
52 PRK12268 methionyl-tRNA synthe 99.2 3.3E-10 7E-15 131.1 15.8 94 275-368 6-120 (556)
53 cd00818 IleRS_core catalytic c 99.2 5.6E-10 1.2E-14 122.0 16.3 91 280-370 9-138 (338)
54 PRK12267 methionyl-tRNA synthe 99.2 2.7E-10 5.9E-15 134.1 14.3 94 275-368 7-120 (648)
55 PRK00133 metG methionyl-tRNA s 99.1 2.1E-09 4.6E-14 127.2 19.8 94 275-368 5-118 (673)
56 PRK00750 lysK lysyl-tRNA synth 99.1 1.2E-09 2.6E-14 125.5 15.4 231 274-555 24-310 (510)
57 PLN02224 methionine-tRNA ligas 99.1 1.3E-09 2.8E-14 127.4 15.3 95 274-368 71-185 (616)
58 cd00674 LysRS_core_class_I cat 99.1 7E-09 1.5E-13 114.0 19.8 246 273-566 19-316 (353)
59 cd00817 ValRS_core catalytic c 98.9 2.8E-08 6.2E-13 110.3 16.3 92 277-368 6-135 (382)
60 PRK12451 arginyl-tRNA syntheta 98.9 1.8E-08 3.8E-13 117.2 14.6 55 472-541 331-388 (562)
61 COG0143 MetG Methionyl-tRNA sy 98.9 1.9E-08 4.1E-13 116.1 14.2 95 274-368 7-121 (558)
62 PLN02610 probable methionyl-tR 98.9 1.2E-07 2.6E-12 114.1 21.5 94 275-368 20-134 (801)
63 PF09334 tRNA-synt_1g: tRNA sy 98.9 2.7E-08 5.9E-13 110.9 14.9 101 462-579 279-381 (391)
64 TIGR00456 argS arginyl-tRNA sy 98.8 3.8E-08 8.2E-13 114.6 12.7 47 471-517 333-380 (566)
65 TIGR00467 lysS_arch lysyl-tRNA 98.7 5.5E-07 1.2E-11 103.6 19.0 247 273-576 18-323 (515)
66 PLN02286 arginine-tRNA ligase 98.6 6.8E-07 1.5E-11 104.4 15.6 45 273-317 117-164 (576)
67 cd00806 TrpRS_core catalytic c 98.6 4.6E-07 1E-11 97.0 12.2 171 282-515 7-197 (280)
68 TIGR00422 valS valyl-tRNA synt 98.5 4.8E-06 1E-10 101.6 20.7 92 277-368 38-167 (861)
69 COG0018 ArgS Arginyl-tRNA synt 98.5 4.2E-06 9.1E-11 97.5 18.7 237 272-541 116-400 (577)
70 PF00750 tRNA-synt_1d: tRNA sy 98.4 3.4E-06 7.5E-11 93.0 13.7 47 272-318 19-68 (354)
71 PF01921 tRNA-synt_1f: tRNA sy 98.2 8.4E-06 1.8E-10 89.8 12.1 246 262-556 10-313 (360)
72 TIGR00233 trpS tryptophanyl-tR 98.0 5.7E-05 1.2E-09 82.8 11.9 170 282-516 10-199 (328)
73 PRK12285 tryptophanyl-tRNA syn 97.9 0.00012 2.7E-09 81.4 13.2 189 259-516 52-258 (368)
74 PRK00390 leuS leucyl-tRNA synt 97.8 3.7E-05 8E-10 93.3 7.7 94 275-368 35-150 (805)
75 KOG0436 Methionyl-tRNA synthet 97.8 0.00018 4E-09 79.7 12.2 274 282-575 49-394 (578)
76 TIGR00396 leuS_bact leucyl-tRN 97.7 9.2E-05 2E-09 90.3 8.9 94 275-368 32-147 (842)
77 COG0180 TrpS Tryptophanyl-tRNA 97.6 0.00042 9E-09 75.4 12.0 183 282-531 13-215 (314)
78 cd00805 TyrRS_core catalytic c 97.6 0.00091 2E-08 71.4 14.1 220 282-577 8-250 (269)
79 COG1384 LysS Lysyl-tRNA synthe 97.6 0.0011 2.4E-08 75.6 15.2 79 465-559 228-311 (521)
80 PLN02563 aminoacyl-tRNA ligase 97.6 0.00019 4.2E-09 88.4 9.1 94 275-368 113-229 (963)
81 PRK13208 valS valyl-tRNA synth 97.5 0.00017 3.7E-09 87.6 8.2 94 275-368 40-169 (800)
82 TIGR00392 ileS isoleucyl-tRNA 97.5 0.00019 4.2E-09 87.8 8.4 96 275-370 39-173 (861)
83 PTZ00419 valyl-tRNA synthetase 97.5 0.00025 5.5E-09 88.0 8.4 95 275-369 63-196 (995)
84 PLN02943 aminoacyl-tRNA ligase 97.5 0.0003 6.6E-09 87.0 9.0 94 275-368 91-222 (958)
85 PRK12556 tryptophanyl-tRNA syn 97.5 0.0013 2.8E-08 72.4 13.0 179 282-516 11-209 (332)
86 PRK08560 tyrosyl-tRNA syntheta 97.5 0.0013 2.8E-08 72.2 12.9 189 260-514 17-219 (329)
87 PRK05729 valS valyl-tRNA synth 97.4 0.0003 6.4E-09 86.3 8.2 89 280-368 44-170 (874)
88 COG2511 GatE Archaeal Glu-tRNA 97.4 0.0037 8.1E-08 71.3 15.9 162 13-184 460-630 (631)
89 COG0495 LeuS Leucyl-tRNA synth 97.4 0.00012 2.5E-09 88.2 4.2 92 275-368 37-152 (814)
90 PRK05743 ileS isoleucyl-tRNA s 97.4 0.00039 8.3E-09 85.7 8.1 94 275-368 52-180 (912)
91 PLN02843 isoleucyl-tRNA synthe 97.3 0.00041 8.9E-09 85.9 8.2 94 275-368 35-164 (974)
92 PLN02486 aminoacyl-tRNA ligase 97.3 0.01 2.2E-07 66.7 17.6 80 280-359 79-169 (383)
93 PRK14900 valS valyl-tRNA synth 97.3 0.00042 9.1E-09 86.5 7.4 94 275-368 51-183 (1052)
94 PLN02381 valyl-tRNA synthetase 97.2 0.00066 1.4E-08 84.8 8.5 95 275-369 131-264 (1066)
95 PRK12282 tryptophanyl-tRNA syn 97.2 0.0011 2.4E-08 73.0 9.1 180 275-516 5-203 (333)
96 PRK06039 ileS isoleucyl-tRNA s 97.2 0.00074 1.6E-08 83.8 8.2 95 275-369 44-177 (975)
97 PF00133 tRNA-synt_1: tRNA syn 97.2 0.00093 2E-08 78.8 8.7 92 277-368 28-158 (601)
98 PTZ00427 isoleucine-tRNA ligas 97.2 0.00084 1.8E-08 84.6 8.2 90 279-368 109-237 (1205)
99 TIGR00395 leuS_arch leucyl-tRN 97.2 0.00063 1.4E-08 84.1 7.0 61 497-573 608-668 (938)
100 PLN02882 aminoacyl-tRNA ligase 97.1 0.0013 2.7E-08 82.9 8.5 89 280-368 46-173 (1159)
101 TIGR00134 gatE_arch glutamyl-t 97.1 0.015 3.3E-07 68.8 16.7 157 13-179 452-617 (620)
102 cd00395 Tyr_Trp_RS_core cataly 97.0 0.006 1.3E-07 65.4 12.1 174 282-517 7-206 (273)
103 COG0525 ValS Valyl-tRNA synthe 96.9 0.0022 4.7E-08 77.7 8.6 90 279-368 40-167 (877)
104 PF00579 tRNA-synt_1b: tRNA sy 96.9 0.0022 4.8E-08 68.9 7.8 174 282-516 13-205 (292)
105 PRK13804 ileS isoleucyl-tRNA s 96.9 0.0019 4.2E-08 80.0 8.2 94 275-368 57-188 (961)
106 PRK04028 glutamyl-tRNA(Gln) am 96.9 0.023 5E-07 67.3 16.1 163 12-184 458-629 (630)
107 PTZ00126 tyrosyl-tRNA syntheta 96.9 0.021 4.6E-07 64.1 15.2 92 260-352 53-155 (383)
108 PRK13354 tyrosyl-tRNA syntheta 96.7 0.059 1.3E-06 61.2 17.4 81 466-555 186-270 (410)
109 PRK05477 gatB aspartyl/glutamy 96.7 0.049 1.1E-06 62.7 16.3 158 13-178 302-473 (474)
110 PRK00927 tryptophanyl-tRNA syn 96.6 0.0038 8.2E-08 68.8 7.1 171 282-515 9-199 (333)
111 PRK14703 glutaminyl-tRNA synth 96.6 0.04 8.6E-07 66.8 15.9 159 13-179 600-770 (771)
112 KOG0435 Leucyl-tRNA synthetase 96.6 0.0025 5.4E-08 74.4 5.6 97 273-369 58-176 (876)
113 PRK05912 tyrosyl-tRNA syntheta 96.5 0.11 2.3E-06 59.0 17.8 88 261-352 22-130 (408)
114 PLN02751 glutamyl-tRNA(Gln) am 96.4 0.089 1.9E-06 61.5 16.2 158 13-179 370-541 (544)
115 cd02156 nt_trans nucleotidyl t 96.3 0.02 4.3E-07 52.3 8.7 39 277-320 2-40 (105)
116 TIGR00133 gatB glutamyl-tRNA(G 96.2 0.13 2.7E-06 59.5 15.9 156 15-178 308-476 (478)
117 PLN02959 aminoacyl-tRNA ligase 96.0 0.014 3E-07 73.4 7.8 30 274-303 46-76 (1084)
118 KOG0432 Valyl-tRNA synthetase 95.2 0.039 8.3E-07 66.5 7.2 92 279-370 82-212 (995)
119 TIGR00395 leuS_arch leucyl-tRN 95.2 0.048 1E-06 67.9 8.2 8 546-553 672-679 (938)
120 COG0064 GatB Asp-tRNAAsn/Glu-t 94.4 0.93 2E-05 52.3 15.2 156 16-178 311-479 (483)
121 COG0008 GlnS Glutamyl- and glu 94.4 0.02 4.4E-07 65.9 1.9 66 532-597 257-322 (472)
122 PLN02886 aminoacyl-tRNA ligase 94.0 0.11 2.4E-06 58.5 6.8 93 274-377 48-148 (389)
123 PRK12300 leuS leucyl-tRNA synt 93.9 0.13 2.9E-06 63.7 7.9 61 496-572 564-624 (897)
124 PRK12284 tryptophanyl-tRNA syn 93.5 0.21 4.5E-06 57.0 7.9 76 282-359 10-95 (431)
125 PRK12283 tryptophanyl-tRNA syn 93.1 0.24 5.1E-06 56.0 7.5 67 282-349 10-85 (398)
126 PF02637 GatB_Yqey: GatB domai 93.1 0.39 8.5E-06 46.7 8.1 102 73-178 43-147 (148)
127 PLN02943 aminoacyl-tRNA ligase 92.8 0.19 4.1E-06 62.8 6.8 65 496-578 569-634 (958)
128 smart00845 GatB_Yqey GatB doma 92.8 0.88 1.9E-05 44.4 10.1 101 73-178 42-146 (147)
129 PRK12300 leuS leucyl-tRNA synt 92.1 0.2 4.4E-06 62.2 5.7 80 287-368 1-128 (897)
130 PRK06039 ileS isoleucyl-tRNA s 92.0 0.23 5E-06 62.2 6.2 67 497-579 579-646 (975)
131 PRK13208 valS valyl-tRNA synth 91.9 0.27 5.8E-06 60.3 6.5 65 496-578 519-584 (800)
132 PF09424 YqeY: Yqey-like prote 91.7 0.62 1.3E-05 45.6 7.5 85 74-178 57-142 (143)
133 PRK05729 valS valyl-tRNA synth 91.1 0.5 1.1E-05 58.6 7.8 67 496-579 506-573 (874)
134 COG0162 TyrS Tyrosyl-tRNA synt 90.2 2.3 5E-05 48.4 11.3 90 259-351 19-125 (401)
135 TIGR00392 ileS isoleucyl-tRNA 89.4 0.52 1.1E-05 58.3 5.8 65 497-578 598-663 (861)
136 PRK14900 valS valyl-tRNA synth 89.3 0.78 1.7E-05 58.0 7.4 65 497-578 525-590 (1052)
137 PTZ00348 tyrosyl-tRNA syntheta 89.3 1.8 3.9E-05 52.3 10.0 89 261-351 20-120 (682)
138 PHA01735 hypothetical protein 87.2 1.1 2.5E-05 38.6 4.7 55 76-131 19-75 (76)
139 PLN02959 aminoacyl-tRNA ligase 87.0 1.7 3.7E-05 55.2 8.3 60 497-572 706-765 (1084)
140 COG0060 IleS Isoleucyl-tRNA sy 86.1 1.4 3E-05 54.8 6.6 91 280-370 57-185 (933)
141 PLN02843 isoleucyl-tRNA synthe 85.7 2.4 5.1E-05 53.4 8.5 59 496-570 597-664 (974)
142 TIGR00234 tyrS tyrosyl-tRNA sy 84.1 4.5 9.8E-05 45.7 9.1 86 261-351 20-124 (377)
143 PLN02882 aminoacyl-tRNA ligase 83.6 1.5 3.3E-05 56.0 5.7 58 499-572 603-662 (1159)
144 PRK05743 ileS isoleucyl-tRNA s 83.6 2.6 5.7E-05 52.7 7.6 58 497-571 579-637 (912)
145 PRK13804 ileS isoleucyl-tRNA s 83.2 3 6.5E-05 52.5 7.9 59 496-571 616-675 (961)
146 PTZ00427 isoleucine-tRNA ligas 81.6 2.8 6.1E-05 53.8 6.9 64 498-577 708-773 (1205)
147 PF00749 tRNA-synt_1c: tRNA sy 80.6 0.14 3E-06 56.2 -4.4 52 524-575 258-310 (314)
148 COG0525 ValS Valyl-tRNA synthe 79.6 5.5 0.00012 49.3 8.1 67 489-571 502-571 (877)
149 PRK00390 leuS leucyl-tRNA synt 78.1 5.7 0.00012 49.1 7.8 48 509-572 570-617 (805)
150 PF00133 tRNA-synt_1: tRNA syn 77.7 4.8 0.0001 48.0 6.8 49 496-560 547-596 (601)
151 PLN02381 valyl-tRNA synthetase 74.0 4.7 0.0001 51.3 5.7 54 283-339 378-443 (1066)
152 KOG2713 Mitochondrial tryptoph 73.9 6 0.00013 43.1 5.6 75 281-356 20-105 (347)
153 TIGR00396 leuS_bact leucyl-tRN 73.6 4 8.7E-05 50.7 4.9 46 509-570 604-649 (842)
154 PTZ00419 valyl-tRNA synthetase 73.1 6.6 0.00014 49.7 6.7 54 283-339 312-376 (995)
155 COG0495 LeuS Leucyl-tRNA synth 72.5 3.4 7.5E-05 50.8 3.9 45 501-561 570-615 (814)
156 KOG0437 Leucyl-tRNA synthetase 66.2 10 0.00023 46.0 5.9 69 270-341 41-116 (1080)
157 PLN02563 aminoacyl-tRNA ligase 63.6 9.5 0.00021 48.1 5.3 50 506-571 720-769 (963)
158 KOG2438 Glutamyl-tRNA amidotra 62.5 2.4E+02 0.0052 32.9 15.2 161 15-178 327-502 (505)
159 KOG0433 Isoleucyl-tRNA synthet 60.3 18 0.00039 44.1 6.4 108 260-370 45-189 (937)
160 KOG2145 Cytoplasmic tryptophan 44.0 46 0.00099 36.7 5.8 60 284-343 96-162 (397)
161 COG0060 IleS Isoleucyl-tRNA sy 41.9 14 0.0003 46.3 1.8 41 500-556 592-633 (933)
162 COG0177 Nth Predicted EndoIII- 37.3 1.1E+02 0.0024 32.2 7.3 28 4-31 64-91 (211)
163 COG1610 Uncharacterized conser 36.0 3.7E+02 0.008 26.9 10.1 85 74-178 61-146 (148)
164 PF09682 Holin_LLH: Phage holi 34.2 1E+02 0.0022 28.7 5.9 40 88-139 65-104 (108)
165 PLN02207 UDP-glycosyltransfera 33.9 62 0.0013 37.7 5.3 68 113-187 389-468 (468)
166 PF10440 WIYLD: Ubiquitin-bind 29.2 43 0.00093 28.9 2.2 29 4-32 6-34 (65)
167 KOG0437 Leucyl-tRNA synthetase 26.2 21 0.00045 43.6 -0.2 46 501-562 702-747 (1080)
168 COG3118 Thioredoxin domain-con 24.4 2.4E+02 0.0051 31.4 7.3 86 93-189 206-291 (304)
169 PTZ00183 centrin; Provisional 23.4 6E+02 0.013 23.7 9.3 47 89-135 88-135 (158)
170 COG2344 AT-rich DNA-binding pr 22.9 97 0.0021 32.3 3.8 73 289-365 92-171 (211)
171 PF07499 RuvA_C: RuvA, C-termi 21.8 71 0.0015 25.3 2.1 24 10-33 4-27 (47)
172 PF02204 VPS9: Vacuolar sortin 21.7 2E+02 0.0043 25.6 5.3 53 50-102 44-101 (104)
173 PRK05472 redox-sensing transcr 20.4 1.6E+02 0.0034 30.3 4.9 69 90-167 15-83 (213)
174 PF09312 SurA_N: SurA N-termin 20.1 66 0.0014 30.1 1.9 22 119-140 63-84 (118)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-198 Score=1605.68 Aligned_cols=666 Identities=55% Similarity=0.944 Sum_probs=631.4
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCccCChHHHHHHHhcCCC
Q 004546 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKI 87 (745)
Q Consensus 8 ~~~~~~~lf~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~~~~~~~~~~~~~I~~~~i 87 (745)
.|++++++|.+|||||+||+||+||++|+++|..+|.+|+++++||+++|+|||+||+++++|..+|+++|++||++|+|
T Consensus 2 ~~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~i 81 (764)
T KOG1148|consen 2 AMEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGKI 81 (764)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCccccccchHHHHHHHhccc
Confidence 57899999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCC
Q 004546 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWAD 167 (745)
Q Consensus 88 ~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~LkwAd 167 (745)
||++||+||++|++++ ++|..+|+++|||||+||||||+++|.++|++|++.|+++||+||.| |++.+|+.|||||
T Consensus 82 kt~~ql~aa~~Y~~~~---~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwAD 157 (764)
T KOG1148|consen 82 KTELQLDAALEYVKSH---TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWAD 157 (764)
T ss_pred CchHHHHHHHHHHhcc---ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCCC
Confidence 9999999999999984 58889999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhcc-----ccCCCCCCCCccccCCCCCCCCCCCCcc
Q 004546 168 PKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK-----FANDAPVQLPEEDLFPISNFPPPEENYK 242 (745)
Q Consensus 168 ~~~vk~~vd~~~~~llGpK~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~n~~ 242 (745)
++.||++||+++++||||||++|++++.|++++ +.++++.+.++. ++....+++.|+|+. +||+||||.|
T Consensus 158 ~~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~--~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent~ 232 (764)
T KOG1148|consen 158 PKSVKKEIDKEVLELLGPKTEADLEKKKKKKKA--EGEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENTQ 232 (764)
T ss_pred HHHHHHHHhhHHHHhcCccchhhcccccccccc--cccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCcc
Confidence 999999999999999999999999988666422 222222222111 122335688899999 9999999966
Q ss_pred cccccccCCCccccccCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccch
Q 004546 243 VHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK 322 (745)
Q Consensus 243 ~~~~~~~~~~~~~~~~~t~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~ 322 (745)
+|+++|++||++|||+|+|||||+||||||||||+|+.+||+||+.+||.|+||||||||++|.
T Consensus 233 ----------------~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEe 296 (764)
T KOG1148|consen 233 ----------------HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEE 296 (764)
T ss_pred ----------------chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhh
Confidence 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhc-cCCCCCCCCCHHHhhHHHH
Q 004546 323 KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK-KMNSPWRDRPIAESLKLFE 401 (745)
Q Consensus 323 ~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~-~~~~~~R~~s~ee~l~~fe 401 (745)
++|+++|.++++|||++|++++|+||||+++|++|.+||++|+||+|||+.|||++.|+. ..+||||+||+||||++|+
T Consensus 297 e~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~ 376 (764)
T KOG1148|consen 297 EEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFE 376 (764)
T ss_pred HHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999983 3479999999999999999
Q ss_pred HHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchh
Q 004546 402 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 481 (745)
Q Consensus 402 ~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~ 481 (745)
+|++|++.+|+++||||+|++++|++|+|+|+||+.+.||||+|++||||||||||||++||+++|||+|||.||..++.
T Consensus 377 ~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~ 456 (764)
T KOG1148|consen 377 DMRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRS 456 (764)
T ss_pred HHhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCC
Q 004546 482 SYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (745)
Q Consensus 482 ~q~~L~~aLg~~~P~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~ 561 (745)
+|+|||++|++|+|.||||||||++|++|||||+.+||++|+|+||||||++||.+|||||++|+||++||+.+|+|.++
T Consensus 457 SY~WLcnaL~iY~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~ 536 (764)
T KOG1148|consen 457 SYYWLCNALEIYCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQ 536 (764)
T ss_pred hHHHHHhhhhcccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHhhccCCCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeeccccccc
Q 004546 562 SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMK 641 (745)
Q Consensus 562 ~~~~~~~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~ 641 (745)
.+|+...||+++|++|+.++||.|+|++|+||+|+|+++++...+++|++|+ +|.+|+|.|+|++.||||++||+++
T Consensus 537 ~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft~vIYIErSDFkee 613 (764)
T KOG1148|consen 537 TTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFTRVIYIERSDFKEE 613 (764)
T ss_pred ceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCccccccccccceEEEEccccccc
Confidence 9999999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred ccccccCcCCCCEEEEeec-eeEEEEEEeecCCCCcEEEEEEEEcC-CCCCCCCceEEeccCC
Q 004546 642 DSKDYYGLAPGKSVLLRYA-FPIKCTEVILSDDKETILHIRAEYDP-SKKTKPKVFLSFISCH 702 (745)
Q Consensus 642 ~~~~~~~l~~g~~v~l~~~-~~i~~~~~~~~~~~g~v~~l~~~~~~-~~~~k~k~~i~Wv~~~ 702 (745)
++|+|+||+|||+|+|++. ++|.+.+|+ +|++|.|++|+++||+ +.++|||++|||||++
T Consensus 614 ~dK~f~RLtpgQpVGLr~~~~vi~~~~vv-kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse~ 675 (764)
T KOG1148|consen 614 DDKDFFRLTPGQPVGLRYAGYVIRVVKVV-KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSES 675 (764)
T ss_pred CCcchhccCCCCcceeEeecceEEEEEEe-eCCCCceEEEEEEecccccccCCceeEEeccCC
Confidence 9999999999999999888 566666666 8999999999999997 5668999999999973
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.2e-194 Score=1661.93 Aligned_cols=705 Identities=80% Similarity=1.263 Sum_probs=667.4
Q ss_pred CChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCccCChHHHHHHHhcCC
Q 004546 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (745)
Q Consensus 7 ~~~~~~~~lf~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~~~~~~~~~~~~~I~~~~ 86 (745)
..+++++++|++|||+|+||+||+||++|+++|..+|++|++..+|||++|+|||+|||+++++..+||++|++||++|+
T Consensus 3 ~~~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gk 82 (788)
T PLN02859 3 ANSEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSK 82 (788)
T ss_pred CccHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999987899999999999999999888999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCC
Q 004546 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (745)
Q Consensus 87 i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~LkwA 166 (745)
|||++||+||++|+++++.+++|.++||++|||||+||+|||+++|+++|++|+++|+++||++|+|.||+++|+.||||
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwa 162 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWA 162 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCC
Confidence 99999999999999999877999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCcchhhccccCCCCCCCCccccCCCCCCCCCCCCcccccc
Q 004546 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTE 246 (745)
Q Consensus 167 d~~~vk~~vd~~~~~llGpK~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~ 246 (745)
|++.||++||+++++||||||++|.+|++|+++ +++++++++ ......++|++||+++++.||+||||+++++.
T Consensus 163 d~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~~~~~~ 236 (788)
T PLN02859 163 DPKIVKKLIDKKLYELLGEKTAADNEKPVKKKK-----EKPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENFKVHTE 236 (788)
T ss_pred CHHHHHHHHHHHHHHhcCCcchhhhcccccccc-----ccccccccc-cccccccccchhhccccccCCCccccccccce
Confidence 999999999999999999999999886554421 111111211 11234589999999999999999999999999
Q ss_pred cccCCCccccccCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHH
Q 004546 247 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 326 (745)
Q Consensus 247 ~~~~~~~~~~~~~t~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~ 326 (745)
+++++|+++..+||+++|++||++++|+|+|||||||||||||||||+|++||+|||+|||+|+||||||||+|+.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~ 316 (788)
T PLN02859 237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI 316 (788)
T ss_pred eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcC
Q 004546 327 DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 406 (745)
Q Consensus 327 ~~I~edL~wLGi~pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G 406 (745)
++|+++|+|||++|++++|||+||+.+|++|.+||++|+||+|+||+++|++.|..+.+|+||++++||||.+|++|++|
T Consensus 317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHH
Q 004546 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 486 (745)
Q Consensus 407 ~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L 486 (745)
.+.+|++|||||+||.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||.+|+++|.||
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCc-ccC
Q 004546 487 LHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIR 565 (745)
Q Consensus 487 ~~aLg~~~P~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~-~~~ 565 (745)
+++|||++|.+|||+|||++|++||||++.+||++|+|+||||||++||++||||||+|+||+|||+.+|||++++ +|+
T Consensus 477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~ 556 (788)
T PLN02859 477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR 556 (788)
T ss_pred HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HHHHHHHHHHhhccCCCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeeccccccccccc
Q 004546 566 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKD 645 (745)
Q Consensus 566 ~~~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~ 645 (745)
++.||+++|+.+++.+||+|||+||+||+|+|+|++..+.+++|.||.+|.++++|+|.++|++.||||++||++.++++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~ 636 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKD 636 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhcccccc
Confidence 99999999999999999999999999999999999888888999999988899999999999999999999999999999
Q ss_pred ccCcCCCCEEEEeeceeEEEEEEeecCCCCcEEEEEEEEcCCCCCCCCceEEeccCC----CCeeEEEccCCcccc
Q 004546 646 YYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCH----AGICCLNVAAGSVLE 717 (745)
Q Consensus 646 ~~~l~~g~~v~l~~~~~i~~~~~~~~~~~g~v~~l~~~~~~~~~~k~k~~i~Wv~~~----~~~~~v~~~~g~~~~ 717 (745)
|+||+||++|+|+|+++|+|++++.+|++|+|++|+|+|+++...|||++|||||+. ++++|.+..++.++.
T Consensus 637 ~~rL~pg~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~ 712 (788)
T PLN02859 637 YYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFL 712 (788)
T ss_pred ceecCCCCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcC
Confidence 999999999999999999999987678899999999999998778899999999974 346663444444443
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-130 Score=1099.36 Aligned_cols=470 Identities=49% Similarity=0.887 Sum_probs=446.0
Q ss_pred CCCCCCCCCCcccccccccCCCccccccCcHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEE
Q 004546 231 ISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCY 310 (745)
Q Consensus 231 ~~~~~~p~~n~~~~~~~~~~~~~~~~~~~t~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~i 310 (745)
.+.||..+++... .|+ .|+|+++++|++.++|+|+|||||||||||||||||+|++||+|||++||+|+
T Consensus 19 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~i 87 (574)
T PTZ00437 19 KRDLSLLQTGRPV-------PGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCY 87 (574)
T ss_pred ccchhhhcccCCC-------ccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE
Confidence 3466666666543 233 68999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCC
Q 004546 311 LRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 390 (745)
Q Consensus 311 LRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~ 390 (745)
||||||||+|+.++|+++|+++|+|||++||+++|||+||+.||++|.+||++|+||+|+||+++|++.|+.+.+|+||+
T Consensus 88 LRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~ 167 (574)
T PTZ00437 88 LRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRN 167 (574)
T ss_pred EEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCccee
Q 004546 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 470 (745)
Q Consensus 391 ~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHv 470 (745)
+++||||++|++|++|.+.+|++|||+|+||.++|++|+|+|+||+.+.+||++||+|+||||||||||||||+||||||
T Consensus 168 ~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHv 247 (574)
T PTZ00437 168 RSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYS 247 (574)
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHH
Q 004546 471 LCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (745)
Q Consensus 471 lRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~ 550 (745)
|||.||.+|++.|+||+++|+|+.|.+|+|+|||++|++||||++.+||++|+|+|||||||+||++||||||+||||++
T Consensus 248 lct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~ 327 (574)
T PTZ00437 248 LCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINR 327 (574)
T ss_pred eeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccc
Q 004546 551 FVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNV 630 (745)
Q Consensus 551 fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~ 630 (745)
||..+|||+++++|+|+.||++||+.+++.++|+|+|+||++|+|+|++.. ..+++|+||+ +|++|+|.++|++.
T Consensus 328 f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~~~ 402 (574)
T PTZ00437 328 FCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFTDT 402 (574)
T ss_pred HHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEcCe
Confidence 999999999999999999999999999999999999999999999998754 5678999998 79999999999999
Q ss_pred eeeeccccc-ccccccccCcCCCC-EEEEeeceeEEEEEEeecCCCCcEEEEEEEEcCCCCCCCCceEEeccCCCCeeEE
Q 004546 631 VYIEHSDFR-MKDSKDYYGLAPGK-SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCHAGICCL 708 (745)
Q Consensus 631 vyIe~~D~~-~~~~~~~~~l~~g~-~v~l~~~~~i~~~~~~~~~~~g~v~~l~~~~~~~~~~k~k~~i~Wv~~~~~~~~v 708 (745)
||||++||+ +.++++|+||+||+ .|+|+++|||+|+++. +|++|+|++++|.++++..+|+|++|||||+..+++|.
T Consensus 403 iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~-~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~~~~v~~e 481 (574)
T PTZ00437 403 FYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFE-VDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVE 481 (574)
T ss_pred EEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEE-ECCCCCEEEEEEEecccccccCCCeEEEeecCCceeEE
Confidence 999999998 56779999999997 8999999999999998 88899999999999998778899999999987788995
Q ss_pred EccCCcccc
Q 004546 709 NVAAGSVLE 717 (745)
Q Consensus 709 ~~~~g~~~~ 717 (745)
+..++.++.
T Consensus 482 vr~Yd~Lf~ 490 (574)
T PTZ00437 482 VRLYNALLK 490 (574)
T ss_pred EEecccccc
Confidence 555444444
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-127 Score=1076.97 Aligned_cols=453 Identities=51% Similarity=0.880 Sum_probs=429.7
Q ss_pred HHHHHHhhhhc-CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004546 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 261 ~~~~~~h~~~~-~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 339 (745)
.+++.++++.. .|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 45677776654 36899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhc----cCCCCCCCCCHHHhhHHHHHHhcCcccCCCeE
Q 004546 340 P-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (745)
Q Consensus 340 p-d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~----~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~v 414 (745)
| +.++|||+||+.||++|++||++|+||+|+||+|+|++.|+. +++|+||++|+|||+++|++|++|.+.+|++|
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 9 579999999999999999999999999999999999999974 89999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCC-C
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 493 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~-~ 493 (745)
||+|+||.++|++|+|||+||+.+.+||++|++|++|||||||||||||+|||||||||.||.+|+++|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCcEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHH
Q 004546 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 494 ~P~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (745)
.|.+|+|+|||++|+|||||++.+||++|.|+|||||||+||++||||||+|+||++||+.+|||++++.|+|+.||++|
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCC
Q 004546 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 653 (745)
Q Consensus 574 r~~l~~~~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~ 653 (745)
|+.+++.+||+|||+||++|+|+|++++..+.+++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~ 411 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGK 411 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEcCeEEEEhHHhhccccccccccCCCC
Confidence 9999999999999999999999999887777889999998 7899999999999999999999999999999999999
Q ss_pred EEEEeeceeEEEEEEeecCCCCcEEEEEEEEcCC-------CCCCCCceEEeccCCCCeeEEEccCCcccc
Q 004546 654 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS-------KKTKPKVFLSFISCHAGICCLNVAAGSVLE 717 (745)
Q Consensus 654 ~v~l~~~~~i~~~~~~~~~~~g~v~~l~~~~~~~-------~~~k~k~~i~Wv~~~~~~~~v~~~~g~~~~ 717 (745)
+|+|+++++|+|++++ +|++|.|++++|+|+++ ..+|+|++|||||+..++++.+..++.++.
T Consensus 412 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~ 481 (554)
T PRK05347 412 EVRLRNAYVIKCEEVV-KDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFT 481 (554)
T ss_pred EEEecCEEEEEEEEEE-EcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecCCCEeEEEEEeccccC
Confidence 9999999999999998 88999999999999876 336888999999987788884444444443
No 5
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=1.1e-123 Score=1083.23 Aligned_cols=447 Identities=45% Similarity=0.838 Sum_probs=428.8
Q ss_pred HHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCC
Q 004546 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 261 ~~~~~~h~~~-~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~ 339 (745)
.+++++|++. ..|+|+|||||||||||||||||+|++||+|||+|||+|+||||||||+|+.++|+++|++||+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 5689999988 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeE
Q 004546 340 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (745)
Q Consensus 340 pd~-i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~v 414 (745)
||+ ++|||+||+.||++|++||++|+||+|+||+++|++.|+ .+++|+||++|++||+.+|++|++|.+.+|++|
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 986 799999999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCC-
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 493 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~- 493 (745)
||+|+||.++|++|+|||+||+...+||++||+|++|||||||||||||+|||||||||.||.+|+++|.||+++||+.
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred -CCcEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHH
Q 004546 494 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (745)
Q Consensus 494 -~P~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (745)
.|.+|+|+|||+.|++||||++.+||++|.|+|||||||+||++||||||+|+||++||..+|||+++++++|+.||++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCC
Q 004546 573 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 652 (745)
Q Consensus 573 ir~~l~~~~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g 652 (745)
||+.+++.+||+|||+||++|+|+|++++....+++|+||++ .+++|+|.++|++.||||++||++.++++|+||+||
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~--~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g 414 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHD--VPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPG 414 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCC--CccCceEEEEEcCeEEEEhhHhhccccccccccCCC
Confidence 999999999999999999999999999877788899999982 279999999999999999999999999999999999
Q ss_pred CEEEEeeceeEEEEEEeecCCCCcEEEEEEEEcCCC------CCCCCceEEeccCCCCeeEEEc
Q 004546 653 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK------KTKPKVFLSFISCHAGICCLNV 710 (745)
Q Consensus 653 ~~v~l~~~~~i~~~~~~~~~~~g~v~~l~~~~~~~~------~~k~k~~i~Wv~~~~~~~~v~~ 710 (745)
++|+|+++|+|+|+++. +|++|.|++++|+|+++. .+|++++|||||...+++|.+.
T Consensus 415 ~~vrL~~~~~i~~~~~~-kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~~~v~~~vr 477 (771)
T PRK14703 415 REVRLRGAYIIRCDEVV-RDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVR 477 (771)
T ss_pred CEEEecceEEEEEEEEE-EcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecCCCeeEEEE
Confidence 99999999999999998 889999999999998873 3678899999998778888433
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=3.5e-123 Score=1040.76 Aligned_cols=438 Identities=49% Similarity=0.828 Sum_probs=418.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHHH
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 353 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~i~~qSd~~~~~ 353 (745)
|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++|| .+++||+||+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh----ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCC
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~----~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~ 429 (745)
|++|++||++|+||+|+||+|+|++.|+ ++++|+||++|+||++++|++|++|++++|++|||+|+||.++|++|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCC-CCcEEeeecccCCCc
Q 004546 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 508 (745)
Q Consensus 430 D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~-~P~~~ef~rLn~~g~ 508 (745)
|+|+||+.+.+||++||+|++|||||||||||||+|||||||||+||++|+++|.||+++++++ .|.||+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeee
Q 004546 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (745)
Q Consensus 509 kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~ 588 (745)
|||||++.++|++|+|+|||||||+||++||||||+|+||+|||+.+|||++++.++|+.|++++|+|+++.++|+|+|+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEEEE
Q 004546 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (745)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (745)
||+||+|+|++... +..++|+||+ ++++|+|.++|++.||||++||++.++++|+||+||++|+|+++|+|+|+++
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~ 396 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERV 396 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEE
Confidence 99999999998653 3568899998 7899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcEEEEEEEEcCC-------CCCCCCceEEeccCCCCeeEEEccCCcccc
Q 004546 669 ILSDDKETILHIRAEYDPS-------KKTKPKVFLSFISCHAGICCLNVAAGSVLE 717 (745)
Q Consensus 669 ~~~~~~g~v~~l~~~~~~~-------~~~k~k~~i~Wv~~~~~~~~v~~~~g~~~~ 717 (745)
+ +|++|.|++++|+|+++ ..+|+|++|||||+.++++|.+..++.++.
T Consensus 397 ~-~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~ 451 (522)
T TIGR00440 397 E-KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFK 451 (522)
T ss_pred E-ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeecCCCeeEEEEecccccC
Confidence 8 88999999999999875 237888999999987788885555555544
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=1.1e-120 Score=1019.62 Aligned_cols=428 Identities=34% Similarity=0.541 Sum_probs=401.8
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004546 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (745)
Q Consensus 270 ~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~ 349 (745)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|++||+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCC
Q 004546 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (745)
Q Consensus 350 ~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~ 429 (745)
|+.||++|++||++|+||+|+||+|||++.|+.+++|+||+++++|++++|++|++|.+.+|++++|+|+|+.++|.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCcc
Q 004546 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (745)
Q Consensus 430 D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~k 509 (745)
|||+||+...+||++||+|++|||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|+|+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeee-
Q 004546 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 588 (745)
Q Consensus 510 LSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~- 588 (745)
||||++.+||++|.|+|||||||+||++||||||+|+||++||+.+|+|+++++++|+.||++||+.+++.+||+|||.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cceeeEEEcCCCCcee-eeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEE
Q 004546 589 -NPLKVVITNMESGTIM-HLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 666 (745)
Q Consensus 589 -dp~kl~i~n~~~~~~~-~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~ 666 (745)
||+||+|+|+|.+... .+++|+||+ ++++|+|+++|++.||||++||+ +|+||++|+|++.+||+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i~~~ 395 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVIEIS 395 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeEEEE
Confidence 6999999999876433 348999998 78999999999999999999996 4999999998888999999
Q ss_pred EEeecCCCCcEEEEEEEEcCCCCCCCCceEEeccC-CCCeeEEEccCCcc
Q 004546 667 EVILSDDKETILHIRAEYDPSKKTKPKVFLSFISC-HAGICCLNVAAGSV 715 (745)
Q Consensus 667 ~~~~~~~~g~v~~l~~~~~~~~~~k~k~~i~Wv~~-~~~~~~v~~~~g~~ 715 (745)
+++ +|.+|+++ . +. ..+|+|++|||||+ .++++|.+..++.+
T Consensus 396 ~~~-~d~~~~~~---~--~~-d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L 438 (523)
T PLN03233 396 KID-GDLEGHFI---P--DG-DFKAAKKKISWIADVSDNIPVVLSEFDNL 438 (523)
T ss_pred EEE-ecCceEEe---e--CC-CCcccccEEEEcCCCCCccceEEEecccc
Confidence 998 77777654 1 12 34678889999984 55788833334433
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-119 Score=1015.87 Aligned_cols=436 Identities=33% Similarity=0.506 Sum_probs=412.5
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCch
Q 004546 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSD 348 (745)
Q Consensus 270 ~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-i~~qSd 348 (745)
+++|+|+|||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|++||+|||++||+ ++|||+
T Consensus 48 a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSd 127 (601)
T PTZ00402 48 AEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSD 127 (601)
T ss_pred CCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCC
Q 004546 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (745)
Q Consensus 349 ~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~ 428 (745)
||+.||++|++||++|+||+|+|++|+|++.|..+++++||+++++|++++|+.|++|.+.+|.+++|+|+||.++|.+|
T Consensus 128 r~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~ 207 (601)
T PTZ00402 128 YMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAM 207 (601)
T ss_pred cHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCc
Confidence 99999999999999999999999999999999889999999999999999999999998888899999999999999999
Q ss_pred CceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCc
Q 004546 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 508 (745)
Q Consensus 429 ~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~ 508 (745)
+|||+||+...+||++||+|+||||||||||||||+|||||||||.||++||++|.||+++|||+.|.+|||++||++|+
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~ 287 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYS 287 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeee
Q 004546 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (745)
Q Consensus 509 kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~ 588 (745)
|||||++.++|++|+|.||||||++||++||||||+|+||++||..+|+|++++.++|+.|+++||+++++.+||+|+|+
T Consensus 288 kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~ 367 (601)
T PTZ00402 288 VMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVS 367 (601)
T ss_pred cccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEEEE
Q 004546 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (745)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (745)
||+||+|+|.+++..+.+++|+||+ +|++|+|+++|++.||||++||. +|+||++|+|+..+|+.|+++
T Consensus 368 ~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~i~~~ 436 (601)
T PTZ00402 368 NTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAYIKNI 436 (601)
T ss_pred CCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEEEEEE
Confidence 9999999999887767788999998 79999999999999999999986 599999998887788888888
Q ss_pred eecCCCCcEEEEEEEEcCC-CCCCCCceEEeccCC-CCeeEEEccCCccc
Q 004546 669 ILSDDKETILHIRAEYDPS-KKTKPKVFLSFISCH-AGICCLNVAAGSVL 716 (745)
Q Consensus 669 ~~~~~~g~v~~l~~~~~~~-~~~k~k~~i~Wv~~~-~~~~~v~~~~g~~~ 716 (745)
..++++|+|+++++++++. ..+|+|++|||||+. +.+++++..++.++
T Consensus 437 ~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf 486 (601)
T PTZ00402 437 RRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLL 486 (601)
T ss_pred EeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEeccccc
Confidence 7556789999999999876 457889999999975 55667554444443
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=4.2e-117 Score=1029.68 Aligned_cols=429 Identities=32% Similarity=0.541 Sum_probs=410.9
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004546 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 350 (745)
Q Consensus 271 ~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~ 350 (745)
..|+|||||||||||||||||||+|++||+|||+|||+|+||||||||+|+.++|+++|++||+|||++||+++|||+||
T Consensus 210 ~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~ 289 (722)
T PLN02907 210 EEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYF 289 (722)
T ss_pred CCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCc
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (745)
Q Consensus 351 ~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D 430 (745)
+.||++|.+||++|+||+|+|+++++++.|..+|+|+||++++|||+++|++|++|.+.++++|||+|+||.++|++|+|
T Consensus 290 ~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D 369 (722)
T PLN02907 290 PQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRD 369 (722)
T ss_pred HHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCccc
Q 004546 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 510 (745)
Q Consensus 431 ~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~kL 510 (745)
+|+||+...+||++||+|++|||||||||||||+|||||||||.||++|+++|.||+++|||+.|.+|+|+|||++|++|
T Consensus 370 ~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~l 449 (722)
T PLN02907 370 PVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLL 449 (722)
T ss_pred CEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeecc
Q 004546 511 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 590 (745)
Q Consensus 511 SKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~dp 590 (745)
|||++.+||++|+|+|||||||+|+++||||||+|+||++||..+|+|++++.++|++|+++||+++++.+||+|+|+||
T Consensus 450 SKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p 529 (722)
T PLN02907 450 SKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKE 529 (722)
T ss_pred cccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --eeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEEEE
Q 004546 591 --LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668 (745)
Q Consensus 591 --~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~ 668 (745)
++++|+|+|+. ...+++|+||+ ++++|+|+++|++.||||++||+. |+||++|+|++.+|+.|+++
T Consensus 530 ~~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~~~i~i~~~D~~~--------l~~g~~v~L~~~~~~~i~~~ 597 (722)
T PLN02907 530 GRVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFTNRIWLDYADAEA--------ISEGEEVTLMDWGNAIIKEI 597 (722)
T ss_pred CEEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEECCcEEEEcchHhh--------cCCCCEEEEcccCCEEEEEE
Confidence 88889998864 45678999998 799999999999999999999974 89999998888889999999
Q ss_pred eecCCCCcEEEEEEEEcCC-CCCCCCceEEeccCC-CCeeE-EEccC
Q 004546 669 ILSDDKETILHIRAEYDPS-KKTKPKVFLSFISCH-AGICC-LNVAA 712 (745)
Q Consensus 669 ~~~~~~g~v~~l~~~~~~~-~~~k~k~~i~Wv~~~-~~~~~-v~~~~ 712 (745)
+ +|++|+|++++|+|+++ ..+|+|++|||||+. ..++| ++.++
T Consensus 598 ~-~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~~~~~~~~~~~d 643 (722)
T PLN02907 598 T-KDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFD 643 (722)
T ss_pred E-ECCCCcEEEEEEEEccccCCCcCCCeEEEecCCCCceEEEEEccc
Confidence 8 88999999999999887 457889999999975 47888 55554
No 10
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-113 Score=967.57 Aligned_cols=417 Identities=31% Similarity=0.520 Sum_probs=399.5
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc--ccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004546 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (745)
Q Consensus 272 ~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp--~re~~e~~~~I~edL~wLGi~pd~i~~qSd~ 349 (745)
+|+|+|||||||||||||||||+|++||++||+|||+|+|||||||| +|+.++|+++|++||+|||++||+++|||+|
T Consensus 99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr 178 (567)
T PRK04156 99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR 178 (567)
T ss_pred CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence 68899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCC
Q 004546 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (745)
Q Consensus 350 ~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~ 429 (745)
|+.||++|++||++|+||+|+||++++++.|..+++|+||++++++++.+|++|++|.+.+|++|+|+|+|+.++|++|+
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCcc
Q 004546 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (745)
Q Consensus 430 D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~k 509 (745)
|||+||+...+||++|++|++|||||||||||||+|||||||||.||++|+++|.||+++|||..|.++||++|+++|+|
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k 338 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV 338 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeec
Q 004546 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (745)
Q Consensus 510 LSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~d 589 (745)
||||++.++|++|.|+||||||++||++||+|||+|+||++||+.+|||+++..++|+.|+++||+.+++.++|+|+|.|
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~ 418 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD 418 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEEEEe
Q 004546 590 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 669 (745)
Q Consensus 590 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 669 (745)
|+||+|+|.+. ..+++|+||+ ++++|+|.++|++.||||++||.+. |+.|+|+++|||+|+++.
T Consensus 419 pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~~~~~~ 482 (567)
T PRK04156 419 PVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVEITGVS 482 (567)
T ss_pred ceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEEEEEEE
Confidence 99999999643 4678999998 7899999999999999999999862 999999999999998864
Q ss_pred ecCCCCcEEEEEEEEcCC---CCCCCC-ceEEeccCCCCeeE-EEccCC
Q 004546 670 LSDDKETILHIRAEYDPS---KKTKPK-VFLSFISCHAGICC-LNVAAG 713 (745)
Q Consensus 670 ~~~~~g~v~~l~~~~~~~---~~~k~k-~~i~Wv~~~~~~~~-v~~~~g 713 (745)
+++|+|+++ ..+|+| ++|||||+..+++| |+.+++
T Consensus 483 ---------~~~~~~~~~~~~~~~k~~~~~i~Wv~~~~~v~~~v~~~~~ 522 (567)
T PRK04156 483 ---------VDKARYHSDDLEEARKNKAPIIQWVPEDESVPVRVLKPDG 522 (567)
T ss_pred ---------EEEEEEcCCccccccccCCCEEEEccCCCCeeEEEECCCc
Confidence 578999876 346777 59999998778999 888775
No 11
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=4.3e-111 Score=950.77 Aligned_cols=425 Identities=28% Similarity=0.476 Sum_probs=393.5
Q ss_pred cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004546 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 350 (745)
Q Consensus 271 ~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~ 350 (745)
..|+|||||||||||||||||||+|++||+||++|||+|+||||||||+|+.++|+++|++||+|||+.||+++|||+||
T Consensus 90 ~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~ 169 (560)
T TIGR00463 90 KMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRI 169 (560)
T ss_pred cCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCc
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (745)
Q Consensus 351 ~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D 430 (745)
+.||++|++||++|+||+|+||+++|++.|..+++|+||+++++||+++|++|++|.+.+|++|||+|+|+.++|++|+|
T Consensus 170 ~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD 249 (560)
T TIGR00463 170 EEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRD 249 (560)
T ss_pred HHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCC-cc
Q 004546 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN-TV 509 (745)
Q Consensus 431 ~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g-~k 509 (745)
+|+||+..++||++||+|++|||||||||||||+|||||||||.||++||+.|.+++.+|||..|.++||+++..++ .+
T Consensus 250 ~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~k 329 (560)
T TIGR00463 250 WVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRT 329 (560)
T ss_pred cEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876654 37
Q ss_pred ccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeec
Q 004546 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (745)
Q Consensus 510 LSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~d 589 (745)
||||.....+.+|.|+||||||++||++|||||++|+||++||..+|||+++++++|+.||++||+++++.+||+|+|.|
T Consensus 330 Lskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~ 409 (560)
T TIGR00463 330 LSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWN 409 (560)
T ss_pred ecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcC
Confidence 77666555555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeeceeEEEEEEe
Q 004546 590 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVI 669 (745)
Q Consensus 590 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~~i~~~~~~ 669 (745)
|++|+|+|+|+. ...++|+||+ +|++|+|.++|++.||||++||++ ++|++|+|++.|||+|+++.
T Consensus 410 p~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~~~~~~ 475 (560)
T TIGR00463 410 PVKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVIITKKN 475 (560)
T ss_pred CcEEEEecCCCC--eeEEccCCCC---CCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEEEEEEe
Confidence 999999998753 3458899998 799999999999999999999974 59999999999999999986
Q ss_pred ecCCCCcEEEEEEEEcCC-CCCCCCceEEeccCCCCeeE-EEccCCcc
Q 004546 670 LSDDKETILHIRAEYDPS-KKTKPKVFLSFISCHAGICC-LNVAAGSV 715 (745)
Q Consensus 670 ~~~~~g~v~~l~~~~~~~-~~~k~k~~i~Wv~~~~~~~~-v~~~~g~~ 715 (745)
++ |.+ .+.++.+ ..+|++++|||||+..+++| ++.+++..
T Consensus 476 -~~--~~~---~~~~~~~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~ 517 (560)
T TIGR00463 476 -DD--GSM---YHSLNLEGARKKGKHIIHWLPDKDAVKVKVIMPDHLI 517 (560)
T ss_pred -CC--CcE---EeccccccccccCCCEEEECcCCCceEEEEEcCcccc
Confidence 43 543 2444444 34668889999998778999 77776654
No 12
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-108 Score=892.19 Aligned_cols=434 Identities=36% Similarity=0.610 Sum_probs=407.6
Q ss_pred hcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchh
Q 004546 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (745)
Q Consensus 270 ~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~ 349 (745)
+..|+|+|||||+|+||||||||||||+|++||..|+|++|+|||||||++|.++|++.|++||..|||+||.++|+|||
T Consensus 196 ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDy 275 (712)
T KOG1147|consen 196 AEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDY 275 (712)
T ss_pred cccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCC
Q 004546 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (745)
Q Consensus 350 ~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~ 429 (745)
|+.+++++++||+.|+||+++.+.|+|+..|+.|.+|.||++|+||||++|++|.+|....-.+|+|+|+||+++|.+||
T Consensus 276 F~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMR 355 (712)
T KOG1147|consen 276 FDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMR 355 (712)
T ss_pred HHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999986555799999999999999999
Q ss_pred ceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCcc
Q 004546 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (745)
Q Consensus 430 D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~k 509 (745)
|||+||+...||||+|++|++||||||||+|.|++|||||.||+.|++++.++|+|++++||+++|.+|+|+|||+.+|+
T Consensus 356 DPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTv 435 (712)
T KOG1147|consen 356 DPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTV 435 (712)
T ss_pred CCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeec
Q 004546 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (745)
Q Consensus 510 LSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~d 589 (745)
|||||+.++|++|+|+|||||||+|++|.+|||++.|+|++|++.+|.|++..+|+|+++|++|++.+|+.+||+.||..
T Consensus 436 LSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~ 515 (712)
T KOG1147|consen 436 LSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVK 515 (712)
T ss_pred hhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ceee--EEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEE-EEeeceeEEEE
Q 004546 590 PLKV--VITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSV-LLRYAFPIKCT 666 (745)
Q Consensus 590 p~kl--~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v-~l~~~~~i~~~ 666 (745)
+..| .+.|-|.++.. -..|.||+ ||++|.+.+.|++.||||+.|++. |..|++| +|.| ||+.|+
T Consensus 516 ~~~V~v~i~~~~~~~~~-~~~PkHkK---n~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnW-GN~~i~ 582 (712)
T KOG1147|consen 516 EDRVEVTITNGPQEEYI-EVSPKHKK---NPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNW-GNAIIK 582 (712)
T ss_pred CceEEEecCCCCCcchh-hccccCCC---CcccCccceeeccceeEeccchhh--------hcCCcEEEEEec-cceeeE
Confidence 6544 45554544332 23556665 899999999999999999999986 8999999 8888 799999
Q ss_pred EEeecCCCCcEEEEEEEEcCCC-CCCCCceEEeccCC-CCeeEEEccCCcccc
Q 004546 667 EVILSDDKETILHIRAEYDPSK-KTKPKVFLSFISCH-AGICCLNVAAGSVLE 717 (745)
Q Consensus 667 ~~~~~~~~g~v~~l~~~~~~~~-~~k~k~~i~Wv~~~-~~~~~v~~~~g~~~~ 717 (745)
++. +|++|+||.+.+++++++ .||+|.+++|+++. ..+++..+.++.+|.
T Consensus 583 ki~-kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lIt 634 (712)
T KOG1147|consen 583 KIN-KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLIT 634 (712)
T ss_pred Eee-ccCCceEEEEEEEeccCCccccccceeEEeccCCCccceEEeechhhcc
Confidence 998 899999999999998884 47788999999976 567878888888876
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-87 Score=743.68 Aligned_cols=400 Identities=32% Similarity=0.448 Sum_probs=343.3
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-i~~qSd~~~~~ 353 (745)
|||||||||||||||||||||++||+|||+|||+||||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh---c-cC-C-CCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCC
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYRE---K-KM-N-SPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~---~-~~-~-~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~ 427 (745)
|++|++||++|+||+|+||+||+++.|. . +. | +++|+ +++|..|+.|..... ++++|+|+|+|+.++++.
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 9999999999999999999987777764 1 11 2 55554 777888889987322 678999999998777779
Q ss_pred CCceEEEEEecCC-CCC-CCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecc-c
Q 004546 428 MYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 504 (745)
Q Consensus 428 ~~D~Vl~Ri~~~~-h~~-~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rL-n 504 (745)
|+|+|.||+.+.+ |+. ++++|+||||||||||||||+|||||||||+||++||++|.||+++|||..|.|+||+++ +
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999999988 998 899999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcc
Q 004546 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 584 (745)
Q Consensus 505 ~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~ 584 (745)
.+|+|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+..+.+..++.++++.++...+|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 56679999999777766689999999999999999999999999999999999999988899999999999999999999
Q ss_pred eeeecceeeEEEcCCC-CceeeeeeccCCCCCCCCCCCeeEeeccc--ceeeecccccccccccccCcCCCCEEEEeece
Q 004546 585 MVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVPFSN--VVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAF 661 (745)
Q Consensus 585 ~aV~dp~kl~i~n~~~-~~~~~~~~p~~p~~~~~~~~g~~~v~~~~--~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~~ 661 (745)
|.+ +|+++.+.++++ ........|+ ++++|.+.+++.+ .++|++.|+.. +.+++.++++...
T Consensus 326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l~~~~~~~i~~~~~~~--------~~~~~~~~~~~l~ 390 (472)
T COG0008 326 MRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPLTKETLIEIERLDFFF--------FEDKEEVRLKRLA 390 (472)
T ss_pred HHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhhccchHHHHhHHHHHH--------hcchHHHHHHhhc
Confidence 999 999999999864 2222334443 4789999999999 89999998865 3344667665555
Q ss_pred eEEEEEEeecCCCCcEEEEEEEEcCCCCCCCCceEEeccCC
Q 004546 662 PIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCH 702 (745)
Q Consensus 662 ~i~~~~~~~~~~~g~v~~l~~~~~~~~~~k~k~~i~Wv~~~ 702 (745)
++.+.++......+.... ...+..++|||++.
T Consensus 391 ~~~~~~~l~~~~~~l~~~---------~~~~~~i~~wv~~~ 422 (472)
T COG0008 391 NVIVAEVLEKDAEGLITS---------DWTKENIIHWVKAV 422 (472)
T ss_pred chHHHHHHHHHHHhhhhc---------cccHHHHHHHHHHH
Confidence 543333321222232221 12234599999954
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=3.8e-74 Score=645.13 Aligned_cols=320 Identities=22% Similarity=0.329 Sum_probs=271.8
Q ss_pred HhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---
Q 004546 266 KHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK--- 342 (745)
Q Consensus 266 ~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~--- 342 (745)
.|.+...|+|||||||||||||||||||+|++||+|||++||+|||||||||++|++++|++.|+++|+||||+||+
T Consensus 37 ~~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~ 116 (535)
T PLN02627 37 AAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPD 116 (535)
T ss_pred ccccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcc
Confidence 45556678899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ------cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcc
Q 004546 343 ------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRI 408 (745)
Q Consensus 343 ------i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~ 408 (745)
+|+||+|++.|+++|++|+++|+||+|+||++++++.|. +.|+++||+++.+++.+.+. +|.
T Consensus 117 ~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~---~g~- 192 (535)
T PLN02627 117 VGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA---KGT- 192 (535)
T ss_pred cCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh---CCC-
Confidence 589999999999999999999999999999999988774 46899999999998754332 222
Q ss_pred cCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc----ccccccccccccccccCCcceeecCchhccchhHHH
Q 004546 409 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYF 484 (745)
Q Consensus 409 ~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w----~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~ 484 (745)
++++|+|++. .+...+.|.|.+.+.+... ..+|.. +|+||||||||||||+|||||||||+||++||++|.
T Consensus 193 ---~~~iR~k~p~-~~~~~~~D~i~G~i~~~~~-~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi 267 (535)
T PLN02627 193 ---PYTYRFRVPK-EGSVKIDDLIRGEVSWNTD-TLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQA 267 (535)
T ss_pred ---CceEEEEcCC-CCceEEEeeeeeeeeeccc-cCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHH
Confidence 5789998753 2334455555555544332 112211 469999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcEEeeec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcc
Q 004546 485 WLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSL 563 (745)
Q Consensus 485 ~L~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~ 563 (745)
||+++|||..|.++|+++ ++.+|+|||||++. .++..||++||.|+||+||+++|||+..+.
T Consensus 268 ~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~~~- 330 (535)
T PLN02627 268 LIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDGTE- 330 (535)
T ss_pred HHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCC-
Confidence 999999999999999987 58899999999975 579999999999999999999999997653
Q ss_pred cCHHHHHHHHHHhhccCCCcceeeecceeeEEEc------CCCCceeeeeeccC
Q 004546 564 IRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (745)
Q Consensus 564 ~~~~~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (745)
-++..++++++.|....+++.+++||+.||.|.| +|.+++.....|+.
T Consensus 331 ~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l 384 (535)
T PLN02627 331 NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERW 384 (535)
T ss_pred CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566789999999999999999999999999877 56555444444444
No 15
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.8e-73 Score=585.89 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=230.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ 353 (745)
+|||||||||||+|||||+|+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEE
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl 433 (745)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999998
Q ss_pred EEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCcccccc
Q 004546 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 513 (745)
Q Consensus 434 ~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~kLSKR 513 (745)
|++.|++|+++||||||+|||||+|||||||||+||+++|++|.||+++||++.|.+|+|+|+|.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 2223456777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCc
Q 004546 514 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (745)
Q Consensus 514 k~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R 583 (745)
++.++|++|.|.||||||++|+.+|+++|++|+||++||+.+|||+++..+++++|+++||+.+++.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.2e-74 Score=620.33 Aligned_cols=306 Identities=30% Similarity=0.414 Sum_probs=267.4
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~i~~qSd~~~~ 352 (745)
+|||||||||||+|||||||+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++|| .+++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhc--cCCCCCCCCCHHHhhHHH-HHHhcCcccCCCeEEEEEecCCCCCCCCC
Q 004546 353 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (745)
Q Consensus 353 ~ye~A~~LI~~G~AY~C~cs~eel~~~R~~--~~~~~~R~~s~ee~l~~f-e~M~~G~~~~g~~vlR~K~d~~~~n~~~~ 429 (745)
|+++|++|+++|+||+|+||++++++.|+. +.+++++...++.++.++ ++|.+|...++++++|+|+++... ..++
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999975 667789999999999999 789999888889999999998755 8899
Q ss_pred ceEEEEEecCC---CCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeee-cccC
Q 004546 430 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS-RLNV 505 (745)
Q Consensus 430 D~Vl~Ri~~~~---h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~-rLn~ 505 (745)
|+|.+++...+ |+..+.+++|+||||||+|||||+|||||||||.||+++|+.|.||+++||+..|.+.|.+ .+|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998776 6666678899999999999999999999999999999999999999999999988777754 6899
Q ss_pred CCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcce
Q 004546 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 585 (745)
Q Consensus 506 ~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~ 585 (745)
+|+|||||++..+| .+..+++.|++|+++.+||..+||++... -++..++++++.|.....++..
T Consensus 240 ~g~kLSKR~~~~~i--------------~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKSI--------------ELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHBH--------------HHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhccccc--------------cccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHHHhhHhhccCch
Confidence 99999999998432 38899999999999999999999997543 6788889999999888899999
Q ss_pred eeecceeeEE
Q 004546 586 VVLNPLKVVI 595 (745)
Q Consensus 586 aV~dp~kl~i 595 (745)
++||+.||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999988743
No 17
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-73 Score=629.83 Aligned_cols=289 Identities=21% Similarity=0.278 Sum_probs=261.8
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHHH
Q 004546 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 355 (745)
Q Consensus 276 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ye 355 (745)
+|||||||||||||||||+|++||+|||++||+|||||||||++|+.++++++|+++|+|||++||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCC
Q 004546 356 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (745)
Q Consensus 356 ~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~ 427 (745)
+|++||++|+||+|+||++++++.|+ ++|+++||+++.++.+ . .++++++|+|++. +...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p~--~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKPN--HTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcCC--Ccee
Confidence 99999999999999999999998874 3689999999988751 1 2347999999873 5677
Q ss_pred CCceEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCC-cEEeee
Q 004546 428 MYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 501 (745)
Q Consensus 428 ~~D~Vl~Ri~~~~h~~~gd~w-----~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P-~~~ef~ 501 (745)
+.|.|.+++.+.++. .++| +|+||||||+|||||+|||||||||+||++||++|.+|+++|||..| .+.|++
T Consensus 149 f~D~v~G~i~~~~~~--~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPDE--IDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEecccc--CCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 889999998776533 2455 47999999999999999999999999999999999999999999864 777777
Q ss_pred -cccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccC
Q 004546 502 -RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 580 (745)
Q Consensus 502 -rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~ 580 (745)
.+|.+|+|||||++. .+|.+||++||+|+||+||++.+||+... ++..+++++..|....
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 479999999999985 58999999999999999999999998764 4556688899999999
Q ss_pred CCcceeeecceeeEEEc
Q 004546 581 APRTMVVLNPLKVVITN 597 (745)
Q Consensus 581 ~~R~~aV~dp~kl~i~n 597 (745)
+++..++||+.||.+.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999999877
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.6e-72 Score=620.17 Aligned_cols=294 Identities=27% Similarity=0.332 Sum_probs=256.3
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhHHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ 353 (745)
+|||||||||||||||||||+|++||+|||++||+|||||||||++|..+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCC-CeEEEEEecCCCC
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND 424 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~vlR~K~d~~~~ 424 (745)
.+++++|+++|+||+|+||++++++.|. +.|++.||+++.++..+. ..+| ++++|+|++ .+
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~--------~~~g~~~~iR~k~~--~~ 151 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL--------EAEGRKPHWRFKLD--DE 151 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH--------HhcCCCceEEEecC--CC
Confidence 9999999999999999999999988775 368899999998876432 1223 589999973 22
Q ss_pred CCCCCceEEEEEecCCCCCCCCcc-----ccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEe
Q 004546 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (745)
Q Consensus 425 n~~~~D~Vl~Ri~~~~h~~~gd~w-----~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~e 499 (745)
...+.|.|.+.+.+.+.. .+ +| +|+||||||||||||+|||||||||+||++||++|.||+++|||..|.++|
T Consensus 152 ~~~~~D~i~G~~~~~~~~-~~-D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H 229 (445)
T PRK12558 152 PISWDDLIRGEQSIDAAS-LS-DPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229 (445)
T ss_pred ceEEEEEeeeEeeccccc-CC-CeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEE
Confidence 333444444444332221 11 11 368999999999999999999999999999999999999999999998888
Q ss_pred eec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhc
Q 004546 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (745)
Q Consensus 500 f~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~ 578 (745)
.+. ++.+|+|||||++. .||.+||++||+|+||+||++.||||..+. ++.++++++..|..
T Consensus 230 ~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~eli~~F~l 291 (445)
T PRK12558 230 LSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSMEELAESFDL 291 (445)
T ss_pred cccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHHHHHHhCCH
Confidence 887 47899999999975 689999999999999999999999998764 45678999999999
Q ss_pred cCCCcceeeecceeeEEEc
Q 004546 579 KTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 579 ~~~~R~~aV~dp~kl~i~n 597 (745)
..+++.+++||+.||.|.|
T Consensus 292 ~~~~~~~~~fd~~KL~w~N 310 (445)
T PRK12558 292 SSFSRAPAKFDPEDLERLN 310 (445)
T ss_pred hhCCCccccCCHHHHHHHH
Confidence 9999999999999999887
No 19
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.4e-70 Score=565.96 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=229.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc--chHHHHHHHHHHHHHcCCCCCCcCCCchhHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r--e~~e~~~~I~edL~wLGi~pd~i~~qSd~~~ 351 (745)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCce
Q 004546 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (745)
Q Consensus 352 ~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~ 431 (745)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecccCCCcccc
Q 004546 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511 (745)
Q Consensus 432 Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rLn~~g~kLS 511 (745)
|++.|++|.++|||||||||||++|||||||||+||.++|+.|.||+++||+..|.++|+++++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 22234566778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCc
Q 004546 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (745)
Q Consensus 512 KRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R 583 (745)
||++.++|++|.|.||||||++|+++||++|++|+||++|+..+|||.+++.+++++|+++||+.+++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 20
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-71 Score=593.14 Aligned_cols=298 Identities=21% Similarity=0.318 Sum_probs=269.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------c
Q 004546 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (745)
Q Consensus 273 g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------i 343 (745)
..|||||||||||+||||++|||+|||+|||++||+|||||||||.+|.+++..++|.++|+|+|+.||+ +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCC-CeE
Q 004546 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 414 (745)
Q Consensus 344 ~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g-~~v 414 (745)
|.||+|.+.|..+|+.||+.|+||+||||++++...|. ++|+..||+++.+|.-. + .+.| ++|
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~----lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K----LAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H----HhcCCCee
Confidence 88999999999999999999999999999999988876 57999999999987543 2 2234 799
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCchhccchhHHHHHHHHh
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~----w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aL 490 (745)
+|||.+- .++.+.|.|.+.+......+.||. -+++||||||||||||+|||||||||+||+.||.+|..||+|+
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999874 377899999999876666555663 4789999999999999999999999999999999999999999
Q ss_pred CCCCCcEEeeec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHH
Q 004546 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (745)
Q Consensus 491 g~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 569 (745)
||.+|.+.|-+. +|.+|+|||||++. .+|..|+++||.|+|+.|||+.+||+....+ +...|
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999997555554 58999999999987 4789999999999999999999999988764 77889
Q ss_pred HHHHHHhhccCCCcceeeecceeeEEEc
Q 004546 570 EYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 570 e~~ir~~l~~~~~R~~aV~dp~kl~i~n 597 (745)
++++.+|....+.+..+++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999998777
No 21
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-69 Score=609.05 Aligned_cols=299 Identities=25% Similarity=0.326 Sum_probs=262.1
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCc--------
Q 004546 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 343 (745)
Q Consensus 272 ~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i-------- 343 (745)
.++|||||||||||||||||+|+|++||+|||++||+|||||||||++|++++|+++|+++|+|||++||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEE
Q 004546 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (745)
Q Consensus 344 ~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vl 415 (745)
|+||+|++.|+++|++||++|+||+|+||+||+++.|. +.|+++||+++.+|..+ .+.+|. ++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g~----~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAGE----PPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCCC----CeeE
Confidence 99999999999999999999999999999999998874 46899999999987653 233332 6899
Q ss_pred EEEecCCCCCCCCCceEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCchhccchhHHHHHHHHhC
Q 004546 416 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG 491 (745)
Q Consensus 416 R~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~----w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg 491 (745)
|+|++. .+...+.|.|.+++.+.... .+|. -+|+||||||++||||+|+|||||||.||+.++++|.+++++||
T Consensus 155 R~k~p~-~~~~~~~D~i~G~~~~~~~~-~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG 232 (476)
T PRK01406 155 RFKVPD-EGEVVFDDLVRGEIEFPNSE-LDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG 232 (476)
T ss_pred EEEcCC-CCceEEEEeccceEEecccc-CCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC
Confidence 999874 23445556666555443322 1221 15699999999999999999999999999999999999999999
Q ss_pred CCCCcEEeeec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHH
Q 004546 492 LYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 570 (745)
Q Consensus 492 ~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le 570 (745)
+..|.+.|++. +|.+|.|||||++. .+|.+||++||.|+||.||++.+||+.... +...++
T Consensus 233 ~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~--e~~~~~ 294 (476)
T PRK01406 233 WEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQ--EIFSLE 294 (476)
T ss_pred CCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCcc--ccCCHH
Confidence 99998888776 59999999999974 589999999999999999999999996643 456778
Q ss_pred HHHHHhhccCCCcceeeecceeeEEEc
Q 004546 571 YHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 571 ~~ir~~l~~~~~R~~aV~dp~kl~i~n 597 (745)
++++.|.....++.+++||+.||.|.|
T Consensus 295 ~~i~~f~l~~~~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 295 ELIELFDLERVSKSPARFDIKKLDWLN 321 (476)
T ss_pred HHHHhcChhhCCCCCccccHHHHHHHH
Confidence 999999999999999999999999887
No 22
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-69 Score=606.31 Aligned_cols=299 Identities=23% Similarity=0.337 Sum_probs=263.0
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhH
Q 004546 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYF 350 (745)
Q Consensus 272 ~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~i~~qSd~~ 350 (745)
+.+|||||||||||||||||||+|++||+|||++||+|+|||||||++|+.++|+++|+++|+|||++|| .+|+||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCC
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (745)
Q Consensus 351 ~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~ 422 (745)
+.|+++|++|+++|+||+|+||++++++.|. ++|++.||+++.++. ..++++++|||++..
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPRE 150 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCC
Confidence 9999999999999999999999999998874 468999999886631 123478999999753
Q ss_pred --------------CCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHH
Q 004546 423 --------------NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (745)
Q Consensus 423 --------------~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~ 488 (745)
.++..+.|+|+.|. +|.|||||+++||||+|||||||||.||..++++|.+|++
T Consensus 151 ~~~~~~D~v~G~~~~~~~~~~D~Vi~Rs------------DG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~ 218 (513)
T PRK14895 151 GSITIHDTLQGEVVIENSHIDDMVLLRA------------DGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQ 218 (513)
T ss_pred CceEEEeecccceecccccCCCcEEEEe------------CCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHH
Confidence 23344555555555 3589999999999999999999999999999999999999
Q ss_pred HhCCCCCcEEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHH
Q 004546 489 ALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (745)
Q Consensus 489 aLg~~~P~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 567 (745)
+||+..|.+.|++.+ |.+|.|||||++. .+|.+||++||.|+||+||++.||||..+. ++.
T Consensus 219 aLG~~~p~~~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~~--e~~ 280 (513)
T PRK14895 219 AFGYAVPSMTHIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGDD--EII 280 (513)
T ss_pred HcCCCCCeEEEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCCc--CCC
Confidence 999999998888885 6999999999986 478999999999999999999999997643 567
Q ss_pred HHHHHHHHhhccCCCcceeeecceeeEEEc------CCCCceeeeeeccC
Q 004546 568 RLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (745)
Q Consensus 568 ~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (745)
.++++++.|....+++.+++||+.||.|.| ++.+++.....|+.
T Consensus 281 ~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 281 SMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred CHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 789999999999999999999999999887 55554444444544
No 23
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=8.5e-69 Score=569.05 Aligned_cols=272 Identities=19% Similarity=0.214 Sum_probs=238.2
Q ss_pred CCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhH
Q 004546 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (745)
Q Consensus 272 ~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-i~~qSd~~ 350 (745)
..+|||||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++|++.|+++|+|||++||+ +++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhh------ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEec----
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD---- 420 (745)
Q Consensus 351 ~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d---- 420 (745)
+.|++++++|+++|+||+|+||++|+++.|. +.|+++||+++.+++. ++++|+|++
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~--------------~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRN--------------PPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccC--------------CceEEEEcCCCce
Confidence 9999999999999999999999999988761 4689999999876531 579999987
Q ss_pred ----------CCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHh
Q 004546 421 ----------MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (745)
Q Consensus 421 ----------~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aL 490 (745)
+.+.+..++|||++|. + ++||||||||||||+|||||||||+||+++|++|.||+++|
T Consensus 149 ~~~D~~~G~~~~~~~~~~~D~Vi~R~-------d-----g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 216 (299)
T PRK05710 149 AFDDRLQGRQHQDLALAVGDFVLRRA-------D-----GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLL 216 (299)
T ss_pred EEEEecceeEeeCCCCCCCCEEEEec-------C-----CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHc
Confidence 1233446777777776 3 59999999999999999999999999999999999999999
Q ss_pred CCCCCcEEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHH
Q 004546 491 GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (745)
Q Consensus 491 g~~~P~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~L 569 (745)
||..|.+.|++.+ |.+|+|||||++.. +|.. .|+.|+ |.+|+..|||+.... .+...+
T Consensus 217 g~~~P~y~H~pll~~~~g~kLSKr~~~~----------------~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~ 275 (299)
T PRK05710 217 GLPTPRYLHLPLVLNADGQKLSKQNGAP----------------ALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEE 275 (299)
T ss_pred CCCCCeEEEeecccCCCCCcccccCCcc----------------chhh---cCcCHH-HHHHHHHcCCCCCcc-cccccc
Confidence 9999999999874 99999999999874 4444 799999 999999999987643 222222
Q ss_pred --HHHHHHhhccCCCcceeeecc
Q 004546 570 --EYHIREELNKTAPRTMVVLNP 590 (745)
Q Consensus 570 --e~~ir~~l~~~~~R~~aV~dp 590 (745)
++++..|....+++..+++.+
T Consensus 276 ~~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 276 LLAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred CHHHHHHhCCHhhCCcCCccCCC
Confidence 677888877778887777654
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1.4e-68 Score=600.11 Aligned_cols=298 Identities=23% Similarity=0.295 Sum_probs=265.2
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCC-CcCCCchhHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd-~i~~qSd~~~~ 352 (745)
+|||||||||||||||||||+|++||+|||++||+|+|||||||++|+.++|+++|+++|+||||+|| .+|+||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 69999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhh--------ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCC
Q 004546 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (745)
Q Consensus 353 ~ye~A~~LI~~G~AY~C~cs~eel~~~R~--------~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~ 424 (745)
|+++|++||++|+||+|+||++++++.|. ++|+++||+++.+++.+.++ ..+++|+|+|++.. .
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~~-~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQE-A 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCCC-C
Confidence 99999999999999999999999988764 46999999999988654321 23479999999863 3
Q ss_pred CCCCCceEEEEEecCCCCCCCCc----cccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEee
Q 004546 425 NFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 500 (745)
Q Consensus 425 n~~~~D~Vl~Ri~~~~h~~~gd~----w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef 500 (745)
...+.|.|.+++.+.++.. +|. -+|+||||||++||||+|||||||||.||+.++++|.+++++||+..|.+.|+
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~ 231 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-DDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHL 231 (470)
T ss_pred ceeEEecccceEEecCccC-CCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEE
Confidence 4677888888877665432 221 15799999999999999999999999999999999999999999999988888
Q ss_pred ec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhcc
Q 004546 501 SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 579 (745)
Q Consensus 501 ~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~ 579 (745)
+. +|.+|+|||||++. .||++|+++||.|+|+.+|+..+||+.... -+....+++++.|...
T Consensus 232 p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 232 PMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSLN 294 (470)
T ss_pred eeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCcc
Confidence 87 58899999999973 689999999999999999999999987753 2345667899999999
Q ss_pred CCCcceeeecceeeEEEc
Q 004546 580 TAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 580 ~~~R~~aV~dp~kl~i~n 597 (745)
..++..++||..||.|.|
T Consensus 295 ~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred cCCCCCCeecHHHHHHHH
Confidence 999999999999998877
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=2.9e-67 Score=551.51 Aligned_cols=260 Identities=19% Similarity=0.186 Sum_probs=224.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHHH
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-i~~qSd~~~~~ 353 (745)
++|||||||||||||||||+|++||++||++||+|||||||||++|+.++|+++|+++|+|||++||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999997 57999999999
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhh---ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCc
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYRE---KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~---~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D 430 (745)
+++|++|+++|+||+|+||++|+++.|. ..|++.||+ +.. ...++++++|+|++. .+..+.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GLL------------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-ccc------------cccCCCceEEEecCC--CCceEEE
Confidence 9999999999999999999999998852 468888998 320 123457899999874 5678999
Q ss_pred eEEEEEecCCCCCCCCccc-----cccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeec-cc
Q 004546 431 LIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 504 (745)
Q Consensus 431 ~Vl~Ri~~~~h~~~gd~w~-----iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~r-Ln 504 (745)
.+.+++.+. |+...++|. |+||||||||||||+|||||||||+||+++|++|.||+++|||..|.+.|++. +|
T Consensus 146 ~~~g~~~~~-~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQD-LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEec-CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 999998754 343445674 49999999999999999999999999999999999999999999999888887 49
Q ss_pred CCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHH
Q 004546 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (745)
Q Consensus 505 ~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (745)
.+|+|||||++..+|+++ -+++++.+|+..+||+.... .+..++++
T Consensus 225 ~~g~kLSKR~~~~~i~~~--------------------~~~~~~~~~l~~lG~~~~~~-~~~~~~~~ 270 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDLS--------------------HPLPALLAALRFLGLPPPPE-LAAASPAE 270 (272)
T ss_pred CCCCeeeccCCccchhcC--------------------CcHHHHHHHHHHcCCCCCcc-cccCCHHH
Confidence 999999999998765442 24678999999999987643 23334443
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=1.3e-61 Score=497.44 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=208.6
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC-cCCCchhHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~-i~~qSd~~~~ 352 (745)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceE
Q 004546 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (745)
Q Consensus 353 ~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~V 432 (745)
|+++|++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecc-cCCCcccc
Q 004546 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 511 (745)
Q Consensus 433 l~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rL-n~~g~kLS 511 (745)
++||||||||||||+|||||||||.||.+++++|.||+++||++.|.++|++++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 489999999999999999999999999999999999999999999999999987 56779999
Q ss_pred ccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeecce
Q 004546 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 591 (745)
Q Consensus 512 KRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~dp~ 591 (745)
||+++ +||++||++|++|+||++|+..+||+.... -++..+++++..|.....++..+++|+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 699999999999999999999999988643 2445567788999999999999999999
Q ss_pred eeEEEc
Q 004546 592 KVVITN 597 (745)
Q Consensus 592 kl~i~n 597 (745)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 987766
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.7e-58 Score=474.71 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=209.7
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCC---------cC
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 344 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~---------i~ 344 (745)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|++.|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCC
Q 004546 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (745)
Q Consensus 345 ~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~ 424 (745)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecc-
Q 004546 425 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 503 (745)
Q Consensus 425 n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rL- 503 (745)
+++|||+||++|||++|||||||||.||+.++++|.|++++||++.|.++|++++
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2589999999999999999999999999999999999999999999999999985
Q ss_pred cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCc
Q 004546 504 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (745)
Q Consensus 504 n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R 583 (745)
|.+|.|||||+++ +||++||++|++|+||++|++.+|++..+. -+...++++++.|.....++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDG-EEFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCcCCHHHHHhcCCHhhCCc
Confidence 9999999999986 699999999999999999999999998764 24556678888998889999
Q ss_pred ceeeecceeeEEEc
Q 004546 584 TMVVLNPLKVVITN 597 (745)
Q Consensus 584 ~~aV~dp~kl~i~n 597 (745)
.+++||+.||...|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999986655
No 28
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=5.2e-49 Score=385.59 Aligned_cols=162 Identities=51% Similarity=0.822 Sum_probs=136.9
Q ss_pred ChhHHHHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCCccCChHHHHHHHhcCCC
Q 004546 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKI 87 (745)
Q Consensus 8 ~~~~~~~lf~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~~~~~~~~~~~~~I~~~~i 87 (745)
+++++++||++|||+|+||+||+||++++++|.++|++|+..++||+++|+|||+|||+++++..+||++|++||++|+|
T Consensus 2 s~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gkl 81 (164)
T PF04558_consen 2 SEEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKL 81 (164)
T ss_dssp -HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS-
T ss_pred ChHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccc-cchhhhHHHHHhhCCCC
Q 004546 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPWA 166 (745)
Q Consensus 88 ~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~-~n~g~l~~~~r~~LkwA 166 (745)
+|++||+||++|+++++..++|+++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.++.++|..||||
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkWA 161 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKWA 161 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTTS
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCCC
Confidence 99999999999999998778999999999999999999999999999999999999999999 99999999999999999
Q ss_pred Chh
Q 004546 167 DPK 169 (745)
Q Consensus 167 d~~ 169 (745)
|||
T Consensus 162 d~k 164 (164)
T PF04558_consen 162 DGK 164 (164)
T ss_dssp -T-
T ss_pred CCC
Confidence 986
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.5e-27 Score=262.07 Aligned_cols=252 Identities=19% Similarity=0.221 Sum_probs=186.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH---HcC--CEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK---ERG--GYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 340 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar---~~~--G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~-p 340 (745)
.|+++.|.||||||++++-+.+.| ..| .+|+.+|+|+|.+ ...+.|+.++.+|++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 788889999999999998777776 233 5899999999964 12468999999999999995 6
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEE
Q 004546 341 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (745)
Q Consensus 341 d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K 418 (745)
+..+++|+|+++|.+++++||++|+||+-. .+.. +...+ +.|..--+..+. ++|..|. |.-
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~YG~LS~~~~l-------e~l~~ga--------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDYGKLSGRDSL-------EELQAGA--------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhhHhhcCCCCh-------hHHhhcc--------ccc
Confidence 889999999999999999999999999862 2221 12222 222211112122 2344454 222
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccccccc----------ccccCCcceeecCchhccchhHHHHHH
Q 004546 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSLCTLEFETRRASYFWLL 487 (745)
Q Consensus 419 ~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~V----------DD~l~gITHvlRg~E~~~~~~~q~~L~ 487 (745)
.+ ..+.+..|||+||...+..|.|.++| .|+|+||..|++ |-|--|+.+++ .|+.|...| .
T Consensus 172 ~~--~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQ---s 243 (464)
T COG0215 172 VD--EEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQ---S 243 (464)
T ss_pred cc--cccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHH---H
Confidence 22 23566799999999999999999999 899999999984 44444444443 244444443 2
Q ss_pred HH-hCC-CCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCccc
Q 004546 488 HA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 564 (745)
Q Consensus 488 ~a-Lg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~ 564 (745)
++ .|. +-..+|.| |+|+++|.|||||.+| +.||++++.+ |.|+.+|.|+++.+++.+-+ +
T Consensus 244 ea~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~pl~-f 306 (464)
T COG0215 244 EAATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSPLD-F 306 (464)
T ss_pred HhhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCccc-c
Confidence 23 453 33789988 6899999999999999 7899999988 99999999999999987764 6
Q ss_pred CHHHHHHHH
Q 004546 565 RLDRLEYHI 573 (745)
Q Consensus 565 ~~~~Le~~i 573 (745)
+.+.|+++.
T Consensus 307 see~L~~A~ 315 (464)
T COG0215 307 SEELLEEAK 315 (464)
T ss_pred CHHHHHHHH
Confidence 666666553
No 30
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.93 E-value=7e-26 Score=239.98 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=166.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCC-
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 340 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~p- 340 (745)
.|+++.++||||+|++++-+++.| .+..+++++|+|+|.+ .....|++.+.+||+.||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999998776666 4666899999999953 124689999999999999985
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEE
Q 004546 341 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (745)
Q Consensus 341 d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K 418 (745)
+..+++|++++.+.+++++||++|+||.-. .+.. ++.+. +.|..- ..+. .++|..|...
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~YG~L-s~~~-------~~~l~~~~~~--------- 155 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDYGKL-SNQD-------LEDLEAGARV--------- 155 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTTTTT-TT-S-------HHHHHHCHHH---------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--cccccc-cccc-------hhhHHhhhhc---------
Confidence 678999999999999999999999999855 2111 11111 223221 1222 2345555422
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHHHHHH
Q 004546 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 487 (745)
Q Consensus 419 ~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q~~L~ 487 (745)
+....+.+..||++||......+.|.++| .|+|+||..|+ +|-|.-|+.+++ .|+.+...|-.-
T Consensus 156 -~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs~a- 230 (300)
T PF01406_consen 156 -EVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQSEA- 230 (300)
T ss_dssp -TT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHHHH-
T ss_pred -ccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHHHH-
Confidence 12234567799999999887779999999 89999999997 566666676665 355565555321
Q ss_pred HHhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCH
Q 004546 488 HALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566 (745)
Q Consensus 488 ~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 566 (745)
+.|-..+.+|.| ++|+++|.||||+.++ +.||++++.+ |+|.+||.||++-.++.+-+ ++.
T Consensus 231 -~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~l~-~s~ 292 (300)
T PF01406_consen 231 -ATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKPLN-FSE 292 (300)
T ss_dssp -HHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS-EE-E-H
T ss_pred -hhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCccc-cCH
Confidence 236566788988 6899999999999998 6799999976 99999999999999977754 888
Q ss_pred HHHHHH
Q 004546 567 DRLEYH 572 (745)
Q Consensus 567 ~~Le~~ 572 (745)
+.|+++
T Consensus 293 ~~l~~A 298 (300)
T PF01406_consen 293 ENLEEA 298 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888765
No 31
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.91 E-value=8e-24 Score=238.64 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=188.8
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC
Q 004546 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 340 (745)
Q Consensus 279 FaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------e~~e~~~~I~edL~wLGi~p 340 (745)
-.|+|+|++||||+|+++..+.++| .|+..|+.++||+|+.- ..+.|.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3789999999999999999999998 68889999999999642 23688999999999999997
Q ss_pred CC-cCCCchhHHHHHHHHHHHHHcCCcccCC-CCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEE
Q 004546 341 FK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 417 (745)
Q Consensus 341 d~-i~~qSd~~~~~ye~A~~LI~~G~AY~C~-cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~ 417 (745)
+. .+.+|+|.+.+++++++|+++|+||.+. .+.- .+... +.| ..+|. . ..++|..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~y----G~ls~-~---~~~~~~~~~--------~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KDY----GKLSK-Q---DLDQLEAGA--------RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--chh----ccCCC-C---CHHHHhccc--------cc
Confidence 76 5689999999999999999999999764 2110 01111 122 22221 1 123444443 22
Q ss_pred EecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHHHHH
Q 004546 418 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWL 486 (745)
Q Consensus 418 K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q~~L 486 (745)
..+ ..+.+..||++|+...+.+|.|.++| .|+|+||..|+ +|=|..|+.|+.- |+.+...|...
T Consensus 169 ~~~--~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fp---Hhene~aqs~a 243 (465)
T TIGR00435 169 DVD--EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP---HHENEIAQSEA 243 (465)
T ss_pred Ccc--cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccc---hHHHHHHHHHH
Confidence 222 23566799999999887788899999 78999999998 6667777777653 44444444321
Q ss_pred HHHhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccC
Q 004546 487 LHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (745)
Q Consensus 487 ~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (745)
..|...+.+|.| +++.++|.|||||+++ +.|++.+.+. |.|+++|.|+++.++... -.++
T Consensus 244 --~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~-l~fs 304 (465)
T TIGR00435 244 --AFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYRSP-LDFS 304 (465)
T ss_pred --hcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCCCC-CccC
Confidence 246555667765 6789999999999998 5789999987 999999999998776544 3577
Q ss_pred HHHHHHHHH
Q 004546 566 LDRLEYHIR 574 (745)
Q Consensus 566 ~~~Le~~ir 574 (745)
++.|+++.+
T Consensus 305 ~~~l~~a~~ 313 (465)
T TIGR00435 305 EELLEAAKN 313 (465)
T ss_pred HHHHHHHHH
Confidence 777776643
No 32
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=99.91 E-value=1.3e-24 Score=215.85 Aligned_cols=126 Identities=35% Similarity=0.554 Sum_probs=103.1
Q ss_pred CCcceeeecceeeEEEcCCCCceeeeeeccCCCCCCCCCCCeeEeecccceeeecccccccccccccCcCCCCEEEEeec
Q 004546 581 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYA 660 (745)
Q Consensus 581 ~~R~~aV~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~vyIe~~D~~~~~~~~~~~l~~g~~v~l~~~ 660 (745)
|||+|||.||++|.|+|+|++....+++|+||+ ++++|+|.++|+++||||++|| +||+||+.|+|+++
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~hPk---~~~~G~r~v~~~~~i~Ie~~D~--------~~l~~g~~v~L~~~ 69 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPLHPK---NPELGTREVPFSKTIYIERSDF--------FRLAPGKEVRLMYW 69 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEESSTT----GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTT
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecCCCC---CccCceEEEEECceEEEEhhHh--------hhccCCCEEEEecc
Confidence 689999999999999999988889999999999 7999999999999999999994 57999999999999
Q ss_pred eeEEEEEEeecCCCCcEEEEEEEEcCCCC---CCCCceEEeccCCCCeeEEEccCCccccc
Q 004546 661 FPIKCTEVILSDDKETILHIRAEYDPSKK---TKPKVFLSFISCHAGICCLNVAAGSVLEN 718 (745)
Q Consensus 661 ~~i~~~~~~~~~~~g~v~~l~~~~~~~~~---~k~k~~i~Wv~~~~~~~~v~~~~g~~~~~ 718 (745)
|||+|++++ +|++|.|++++|+|+++.. +|+|++|||||+.++++|....++.+++.
T Consensus 70 ~ni~i~~~~-~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~ 129 (174)
T PF03950_consen 70 GNIKITSIE-KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSAKDSVPVEVRLYDHLFTV 129 (174)
T ss_dssp EEEEEEEEE-E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEGCC-EEEEEEEE--SBSS
T ss_pred ceEEEEEee-ecCCCCEEEEEEEEecccccCCcccCcEEEEccCCCCeeeEEEEehhhcCC
Confidence 999999998 7889999999999998643 67888999999988899966666666653
No 33
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.91 E-value=2.2e-23 Score=235.17 Aligned_cols=261 Identities=17% Similarity=0.195 Sum_probs=188.0
Q ss_pred CCeEEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCccc-------------chHHHHHHHHHH
Q 004546 272 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 332 (745)
Q Consensus 272 ~g~V~tR-FaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~r-------------e~~e~~~~I~ed 332 (745)
+++|... .+|+|+|++||||+|++++.+.+||. ++..|+..+||+|+.- ....|.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3556555 59999999999999999999999985 7789999999999632 246899999999
Q ss_pred HHHcCC-CCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccC
Q 004546 333 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (745)
Q Consensus 333 L~wLGi-~pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~ 410 (745)
+++||+ .||..+++|+|.+.+++++++|+++|+||.+.-+.. ++... +.|. .++.. ..++|..|.
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--~~yg----~ls~~----~~~~~~~~~--- 167 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--PDYG----KLSGR----NLDELQAGA--- 167 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--cccc----cCCCC----CHHHHhccC---
Confidence 999999 577778899999999999999999999996431100 01111 2232 22211 123455553
Q ss_pred CCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccccc-c---------cccccCCcceeecCchhccc
Q 004546 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-C---------IVDSIENITHSLCTLEFETR 479 (745)
Q Consensus 411 g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~-~---------VDD~l~gITHvlRg~E~~~~ 479 (745)
|. +....+.+..||++||.....++.|.++| .|.|+||..| + +|=|..|+.|++ -|+.+
T Consensus 168 -----~~--~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif---pHh~n 237 (463)
T PRK00260 168 -----RV--EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF---PHHEN 237 (463)
T ss_pred -----cC--CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC---CchHh
Confidence 22 22334667799999999878888899999 6899999999 3 555555555443 25555
Q ss_pred hhHHHHHHHHhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCcc
Q 004546 480 RASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 558 (745)
Q Consensus 480 ~~~q~~L~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s 558 (745)
.-.|-- ...|...+.+|-| +++..+|.|||||+++ +.|+..+.+. |.|++||.|+++..+.
T Consensus 238 eiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~~~~~ 299 (463)
T PRK00260 238 EIAQSE--AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLSAHYR 299 (463)
T ss_pred HHHHHH--HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHhCCCC
Confidence 444421 1246344557776 6789999999999998 5689999886 9999999999976654
Q ss_pred CCCcccCHHHHHHHHH
Q 004546 559 RSDSLIRLDRLEYHIR 574 (745)
Q Consensus 559 ~~~~~~~~~~Le~~ir 574 (745)
. +..++++.|++..+
T Consensus 300 ~-~~~fs~~~l~~a~~ 314 (463)
T PRK00260 300 S-PLNFSEEALEQAKK 314 (463)
T ss_pred C-CCccCHHHHHHHHH
Confidence 3 33467766665543
No 34
>PLN02946 cysteine-tRNA ligase
Probab=99.90 E-value=5.4e-24 Score=242.60 Aligned_cols=253 Identities=14% Similarity=0.131 Sum_probs=190.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 340 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~-p 340 (745)
.|+++|++||||+|+++..+.++| .|...|+..|||+|.+ .....|.+.+.++++.||+. |
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 799999999999999999888887 4666899999999953 22468899999999999996 4
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEe
Q 004546 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 419 (745)
Q Consensus 341 d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~ 419 (745)
+..+.+|+|.+.+.+++++|+++|+||.-.-+.. .+.++ +.|. .+|.. ..++|..|. |+
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~YG----~Ls~~----~l~~l~~g~--------rv-- 226 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEYG----KLSGR----KLEDNRAGE--------RV-- 226 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhhh----hcCCC----ChhHhhcCC--------CC--
Confidence 5678899999999999999999999996321100 11111 2232 22211 123455554 32
Q ss_pred cCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHHHHHHH
Q 004546 420 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 488 (745)
Q Consensus 420 d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q~~L~~ 488 (745)
+....+.+..||++||...+.+|.|.++| .|+|+||..|+ +|-|.-|+.|++ .|+.+.-.|-. -
T Consensus 227 ~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a 301 (557)
T PLN02946 227 AVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--A 301 (557)
T ss_pred CcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHH--H
Confidence 22235667799999998877779999999 89999999998 788888888876 46666666642 1
Q ss_pred HhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHH
Q 004546 489 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (745)
Q Consensus 489 aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 567 (745)
+.|.....+|.| |+++++|.|||||+++ +.|++++.+. |.|+++|.|+++.+++..- .++++
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~~l-~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRSPI-NYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCCCc-EecHH
Confidence 245444557765 7899999999999998 5799999986 9999999999988876554 57777
Q ss_pred HHHHHHH
Q 004546 568 RLEYHIR 574 (745)
Q Consensus 568 ~Le~~ir 574 (745)
.|++..+
T Consensus 365 ~L~~a~~ 371 (557)
T PLN02946 365 QLESASE 371 (557)
T ss_pred HHHHHHH
Confidence 7776643
No 35
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.3e-23 Score=234.22 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=191.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------re~~e~~~~I~e 331 (745)
.|+++.++||||+|++++.+.++| .+...|+++|+|+ |++ .....|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688889999999999998888877 4566899999999 642 124588899999
Q ss_pred HHHHcCCCCCC-cCCCchhHHHHHHHHHHHHHcCCcccC-----CCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHh-
Q 004546 332 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR- 404 (745)
Q Consensus 332 dL~wLGi~pd~-i~~qSd~~~~~ye~A~~LI~~G~AY~C-----~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~- 404 (745)
+++.||+.++. .+.+|+|.+.+.+++++|+++|+||.- ||... + +.|..- +.+.. ++|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~l-s~~~l-------~~l~~ 173 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F--KSYGQM-AGINL-------NDFKD 173 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--cchhhh-cCCCH-------HHHhh
Confidence 99999998664 557899999999999999999999952 22211 1 223211 11222 2333
Q ss_pred -cCcccCCCeEEEEEecCCCCCCCCCceEEEEEe---cCCCCCCCCcc-ccccccccccc----------cccccCCcce
Q 004546 405 -NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITH 469 (745)
Q Consensus 405 -~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~---~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITH 469 (745)
.|. |+. ....+.+..||++|+.. .+.++.|.++| .|+|+||..|+ +|-|..|+.|
T Consensus 174 ~~~~--------~v~--~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dl 243 (481)
T PRK14534 174 MSVS--------RVE--IDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243 (481)
T ss_pred hccC--------cCC--cccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEeccccc
Confidence 232 222 22346677999999974 45578888999 89999999998 7888888888
Q ss_pred eecCchhccchhHHHHHHHHhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHH
Q 004546 470 SLCTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 548 (745)
Q Consensus 470 vlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI 548 (745)
++ .|+.+...|.. -+.|...+.+|.| ++|+++|.|||||.++ +.||+.|.+.|+.|+++
T Consensus 244 iF---PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~al 303 (481)
T PRK14534 244 IG---VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDF 303 (481)
T ss_pred CC---CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHH
Confidence 76 46777777642 2247777889988 5799999999999998 57999999999999999
Q ss_pred HHHHHhcCccCCCcccCHHHHHHHH
Q 004546 549 NAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 549 ~~fl~~lG~s~~~~~~~~~~Le~~i 573 (745)
|.|+++..++..- .++++.|+++.
T Consensus 304 R~~lls~~yr~~l-~Fs~e~l~~a~ 327 (481)
T PRK14534 304 RYFCLTAHYRTQL-KFTFNNLKACK 327 (481)
T ss_pred HHHHHhCCCCCCC-CCCHHHHHHHH
Confidence 9999988887766 48888888774
No 36
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=6.5e-23 Score=231.38 Aligned_cols=250 Identities=17% Similarity=0.211 Sum_probs=189.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecC----------Ccc-------------cchHHHHHHHHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDT----------Dp~-------------re~~e~~~~I~e 331 (745)
.|++++++||||+|+++..+.++| .|...|+.+|+|+ |++ .....|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 789999999999999998888877 4556899999999 643 124588899999
Q ss_pred HHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccC-----CCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhc
Q 004546 332 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (745)
Q Consensus 332 dL~wLGi~p-d~i~~qSd~~~~~ye~A~~LI~~G~AY~C-----~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~ 405 (745)
+++.||+.+ +..+++++|.+.+.+++++|+++|+||.- ||.. .+ +.|.. ...+.. ++|..
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~----~~--~~YG~-Ls~~~~-------~~l~~ 175 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR----TF--PSYGS-LASAAV-------EDLQA 175 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC----cc--cchhh-hcCCCH-------HHhhc
Confidence 999999986 55688999999999999999999999953 2221 11 22221 112222 34555
Q ss_pred CcccCCCeEEEEEecCCCCCCCCCceEEEEEec--CC-CCCCCCcc-ccccccccccc----------cccccCCcceee
Q 004546 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSL 471 (745)
Q Consensus 406 G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~--~~-h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvl 471 (745)
|. |+ +....+.+..||++|+... ++ .|.|.++| .|+|+||..|+ +|-|..|+.+++
T Consensus 176 g~--------~v--~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF 245 (490)
T PRK14536 176 GA--------RI--EHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR 245 (490)
T ss_pred CC--------cC--CCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC
Confidence 53 22 2223466779999998753 22 46788999 79999999998 577777787776
Q ss_pred cCchhccchhHHHHHHHHhCCCCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHH
Q 004546 472 CTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (745)
Q Consensus 472 Rg~E~~~~~~~q~~L~~aLg~~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~ 550 (745)
.|+.+...|.- -+.|...+.+|.| ++|+++|.|||||+++ +.||+.|.+.|+.|+++|.
T Consensus 246 ---PHHeneiAqs~--a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~ 305 (490)
T PRK14536 246 ---VHHTNEIAQCE--AATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRF 305 (490)
T ss_pred ---cchhhHHHHHH--HhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHH
Confidence 46666666642 1236666788988 5789999999999998 5799999999999999999
Q ss_pred HHHhcCccCCCcccCHHHHHHHHH
Q 004546 551 FVQGIGISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 551 fl~~lG~s~~~~~~~~~~Le~~ir 574 (745)
|+++..+...- .++++.|++..+
T Consensus 306 ~lls~~yr~~l-~Fs~e~l~~a~~ 328 (490)
T PRK14536 306 FLLGGHYRSQL-AFSWEALKTAKA 328 (490)
T ss_pred HHHhCCCCCCC-CCCHHHHHHHHH
Confidence 99998886665 488888887655
No 37
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=9.6e-24 Score=231.98 Aligned_cols=257 Identities=15% Similarity=0.062 Sum_probs=187.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCC-CC
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-EP 340 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi-~p 340 (745)
.|+|+|++||||+|+++..+.++| .+...|+..+||.|.+ .....|.+.+.++++.||+ .|
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 799999999999999999888887 3556899999999853 2245888999999999997 68
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCC----CHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEE
Q 004546 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (745)
Q Consensus 341 d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~c----s~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vl 415 (745)
+..+++|++.+.+++++++|+++|+||.-.. +.. ++.+. +.|... .++.. ++|..|...
T Consensus 96 ~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~-------~~~~~~~~~------ 159 (384)
T PRK12418 96 RDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDR-------ATMLELFAE------ 159 (384)
T ss_pred CccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCH-------HHHHhhhcc------
Confidence 8899999999999999999999999996432 111 11111 223211 12232 233332100
Q ss_pred E-EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHH
Q 004546 416 R-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (745)
Q Consensus 416 R-~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q 483 (745)
| ...+ ...+.+..||++||...+.+|.|.++| .|+|+||..|+ +|-|.-|+.|++. |+.+...|
T Consensus 160 ~~~~~~-~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP---HHeneiaq 235 (384)
T PRK12418 160 RGGDPD-RPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFP---HHEFSAAH 235 (384)
T ss_pred cccCcc-cccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccc---hhHhHHHH
Confidence 1 0111 123567799999999877789999999 89999999996 6667777777653 55555444
Q ss_pred HHHHHHhCC-CCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCC
Q 004546 484 FWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (745)
Q Consensus 484 ~~L~~aLg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~ 561 (745)
-. -+.|- .-+.+|.| ++|+.+|.|||||++| +.|++.+.+.|+.|.++|.|+++-.++..-
T Consensus 236 ~~--a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~~l 298 (384)
T PRK12418 236 AE--AATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRADR 298 (384)
T ss_pred HH--HhcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCCCc
Confidence 31 12444 45678888 5799999999999998 578999988999999999999877776554
Q ss_pred cccCHHHHHHHHH
Q 004546 562 SLIRLDRLEYHIR 574 (745)
Q Consensus 562 ~~~~~~~Le~~ir 574 (745)
.++++.|++..+
T Consensus 299 -~fs~e~l~~a~~ 310 (384)
T PRK12418 299 -EWTDAVLAEAEA 310 (384)
T ss_pred -ccCHHHHHHHHH
Confidence 477888877644
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.89 E-value=1.8e-23 Score=231.02 Aligned_cols=257 Identities=15% Similarity=0.073 Sum_probs=183.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCC-C
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 340 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~-p 340 (745)
.|+|++++||||+|+++..+.++| .+...|+..+||.|.+ .....|.+.+.++++.||+. |
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 789999999999999999888888 4666899999999853 12458889999999999986 7
Q ss_pred CCcCCCchhHHHHHHHHHHHHHcCCcccCCCC--HHHHHHhhh-ccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEE-
Q 004546 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQT--PEEIKEYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR- 416 (745)
Q Consensus 341 d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs--~eel~~~R~-~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR- 416 (745)
+..+++|++.+.+.+++++|+++|+||.-... +.-....+. +.|... .++..+ +|..|.. . |
T Consensus 123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~L-s~~~~~-------~~~~~~~---~---~~ 188 (411)
T TIGR03447 123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYE-SGYDRA-------TMLELFA---E---RG 188 (411)
T ss_pred CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhccccc-cCCCHH-------HHHhhhc---c---cc
Confidence 88899999999999999999999999964320 011111111 223221 123332 3332100 0 1
Q ss_pred EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHHHH
Q 004546 417 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFW 485 (745)
Q Consensus 417 ~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q~~ 485 (745)
...+ ...+.+.+||++||.....+|.|.++| .|+|+||..|+ +|=|.-|+.+++. |+.+.-.|.
T Consensus 189 ~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifp---Hheneiaq~- 263 (411)
T TIGR03447 189 GDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFP---HHEFSAAHA- 263 (411)
T ss_pred cCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCccccccc---chHhHHHHH-
Confidence 1111 124567799999999877789999999 89999999997 4444444444432 333333332
Q ss_pred HHHH-hCC-CCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCc
Q 004546 486 LLHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 562 (745)
Q Consensus 486 L~~a-Lg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 562 (745)
.+ .|- +-+.+|.| ++|+++|.|||||++| +.|++.+.+.|+.|+++|.|+++..++..-
T Consensus 264 --~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl- 325 (411)
T TIGR03447 264 --EAATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQDR- 325 (411)
T ss_pred --HHhcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCCCC-
Confidence 22 354 56778988 5799999999999998 579999999999999999999877776654
Q ss_pred ccCHHHHHHHH
Q 004546 563 LIRLDRLEYHI 573 (745)
Q Consensus 563 ~~~~~~Le~~i 573 (745)
.++.+.|++..
T Consensus 326 ~fs~e~l~~a~ 336 (411)
T TIGR03447 326 DWTDAVLAEAE 336 (411)
T ss_pred ccCHHHHHHHH
Confidence 47777776653
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.88 E-value=5.5e-22 Score=228.15 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=186.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcCCCCC
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 341 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLGi~pd 341 (745)
.|+|++++||||+|++++.+.++| .|...|+..++|+|.+ .-...|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 788889999999999999888887 4556899999999953 1246889999999999999865
Q ss_pred -CcCCCchhHHHHHHHHHHHHHcCCcccC------CCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeE
Q 004546 342 -KITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (745)
Q Consensus 342 -~i~~qSd~~~~~ye~A~~LI~~G~AY~C------~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~v 414 (745)
..+.+|+|.+.+.+++++|+++|+||.- ||.. .+ +.|..- ..+. .++|..|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f--~~YG~L-S~~~-------~~~l~~g~------- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EF--AAYGQL-SGKS-------LDDLRAGE------- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----cc--cccccc-cCCC-------hHHhcCCC-------
Confidence 4678899999999999999999999952 3322 11 223211 1122 23455554
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhccchhHH
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~~~~~~q 483 (745)
|+..+ ..+.+..||++||...+.+|.|.++| .|+|+||..|+ +|-|.-|+.|++ .|+.|.-.|
T Consensus 394 -rve~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQ 467 (699)
T PRK14535 394 -RVEVD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQ 467 (699)
T ss_pred -ccccc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHH
Confidence 22222 24666799999999887788999999 89999999997 777888888876 466666666
Q ss_pred HHHHHHhCCC----------------CCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHH
Q 004546 484 FWLLHALGLY----------------QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 546 (745)
Q Consensus 484 ~~L~~aLg~~----------------~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~Pe 546 (745)
-.- +.|.. -..+|.| ++++++|.|||||+++ +.|++.+.++ |.|+
T Consensus 468 seA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpd 529 (699)
T PRK14535 468 SVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPE 529 (699)
T ss_pred HHH--hhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHH
Confidence 421 22331 2457877 6889999999999998 5799999986 9999
Q ss_pred HHHHHHHhcCccCCCcccCHHHHHHHH
Q 004546 547 SINAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 547 AI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (745)
++|.|+++.++...- .++.+.|+++.
T Consensus 530 alRl~lLsshYRspL-~fS~e~Le~Ak 555 (699)
T PRK14535 530 VVRFFILRAHYRSPL-NYSDAHLDDAK 555 (699)
T ss_pred HHHHHHHcCCCCCCC-CcCHHHHHHHH
Confidence 999999987765554 47777776653
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.86 E-value=3e-22 Score=233.42 Aligned_cols=269 Identities=13% Similarity=0.167 Sum_probs=187.1
Q ss_pred CeEEEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCcc--------------cchHHHHHHHH
Q 004546 273 GNVLTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE--------------AEKKEYIDHIE 330 (745)
Q Consensus 273 g~V~tRF--aPsPtG~LHIGhaRaal~n~~~Ar------~~~G~~iLRidDTDp~--------------re~~e~~~~I~ 330 (745)
+..|+-| .|+++++.||||||++++.+.++| .|...|+..|+|+|.+ .-...|.+.+.
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3344556 677779999999999999887777 2446899999999953 11357889999
Q ss_pred HHHHHcCCCC-CCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcc
Q 004546 331 EIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 408 (745)
Q Consensus 331 edL~wLGi~p-d~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~ 408 (745)
+|++.||+.+ +.++++|+|.+.+.+++++|+++|+||.-..+-. ++.+++..+ ..|..++++.. ...+.|..|.
T Consensus 138 ~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~--~~Yg~L~p~~~-~~~~~~~~g~- 213 (651)
T PTZ00399 138 EDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAG--HVYPKLEPESV-ADEDRIAEGE- 213 (651)
T ss_pred HHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccch--hhHHhhChhhc-CCHHHHhccc-
Confidence 9999999985 5688999999999999999999999996432211 122221100 01222333211 1112333332
Q ss_pred cCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-ccccccccccc----------cccccCCcceeecCchhc
Q 004546 409 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFE 477 (745)
Q Consensus 409 ~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~----------VDD~l~gITHvlRg~E~~ 477 (745)
| . +. +......+..||++|++..+.+|.|.++| .|.|+||..|+ +|=|..||.+++ .|+
T Consensus 214 --~--~--l~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~F---PHH 283 (651)
T PTZ00399 214 --G--A--LG-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKF---PHH 283 (651)
T ss_pred --C--C--cc-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCC---Ccc
Confidence 1 0 10 11123456699999999988889999999 79999999986 555666666654 244
Q ss_pred cchhHHHHHHHHhCC-CCCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhc
Q 004546 478 TRRASYFWLLHALGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 555 (745)
Q Consensus 478 ~~~~~q~~L~~aLg~-~~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~l 555 (745)
.|.-.|--- +.|- .-+.+|.| |+|+++|.|||||+++ +.|++.+.+. |.|++||.|++..
T Consensus 284 eNEiAQseA--~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~ 345 (651)
T PTZ00399 284 DNELAQSEA--YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH 345 (651)
T ss_pred hhHHHHHHH--hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc
Confidence 444444211 1333 44678888 9999999999999998 5799999987 9999999999876
Q ss_pred CccCCCcccCHHHHHHHHH
Q 004546 556 GISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 556 G~s~~~~~~~~~~Le~~ir 574 (745)
.+... ..++++.+.+...
T Consensus 346 ~~~~d-ldFS~e~l~~a~~ 363 (651)
T PTZ00399 346 KWDKP-MNYSDESMDEAIE 363 (651)
T ss_pred CCCCC-CccCHHHHHHHHH
Confidence 66544 3588887766643
No 41
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.4e-21 Score=212.99 Aligned_cols=263 Identities=15% Similarity=0.137 Sum_probs=182.7
Q ss_pred CcHHHHHHhhhhcCCeEEEEeCCCCC--CcCchhHHHHHHHHHHHHH------HcCCEEEEEeecCCcc-----c-----
Q 004546 259 NTKEVLDKHLEVTGGNVLTRFPPEPN--GYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE-----A----- 320 (745)
Q Consensus 259 ~t~~~~~~h~~~~~g~V~tRFaPsPt--G~LHIGhaRaal~n~~~Ar------~~~G~~iLRidDTDp~-----r----- 320 (745)
||....++-+.-..|+-+|.|...|| ...||||||+++--+.+-| .|+..|+++|+|+|.+ |
T Consensus 39 NslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~ 118 (586)
T KOG2007|consen 39 NSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG 118 (586)
T ss_pred eccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc
Confidence 55443333333334555799955555 6699999999986555555 5788999999999953 2
Q ss_pred ch--------HHHHHHHHHHHHHcCCC-CCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHH-HHHHhhhccCCCCCCC
Q 004546 321 EK--------KEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRD 390 (745)
Q Consensus 321 e~--------~e~~~~I~edL~wLGi~-pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~e-el~~~R~~~~~~~~R~ 390 (745)
+. .-|++.+.+||..|++- |+..++.|+|.+++.++++++|++|.||+-..|.. ++. .++..|..
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~-----kf~~~YgK 193 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVD-----KFPHSYGK 193 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecc-----cccchhhh
Confidence 11 13678999999999986 56789999999999999999999999998644322 111 12222222
Q ss_pred CCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccccccc---------
Q 004546 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI--------- 460 (745)
Q Consensus 391 ~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w-~iyPTY~fA~~V--------- 460 (745)
+.-+ + +.+..| +|..+ | +.+.+..||++|+.+.+..|.|.++| .|.|+||..|++
T Consensus 194 L~G~--~---~~~~~g---Eg~l~-----d--s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~ 258 (586)
T KOG2007|consen 194 LVGQ--R---KNLQEG---EGVLS-----D--SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQ 258 (586)
T ss_pred hcCc--h---hhcccC---cCccc-----c--ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccc
Confidence 2211 0 223333 23332 1 34566789999999999999999999 899999999984
Q ss_pred -ccccCCcceeecCchhccchhHHHHHHHHhCCC-CCcEEee-ecccCCCccccccccccccccCccCCCCCCCcccHHH
Q 004546 461 -VDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 537 (745)
Q Consensus 461 -DD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~-~P~~~ef-~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~ 537 (745)
|-|-.||...+ .|+.|...|-- -++.-. =..||-| |||++.|.||||+..| +.||+.
T Consensus 259 lDIH~GG~DL~F---PHHeNEiAQ~e--A~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke 318 (586)
T KOG2007|consen 259 LDIHGGGIDLAF---PHHENEIAQSE--AAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKE 318 (586)
T ss_pred cceecCcccccC---CCcccHHHHHH--HHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHH
Confidence 44555555433 24444444411 112111 1346655 8999999999999988 789999
Q ss_pred HHHcCCCHHHHHHHHHhcCccCCCc
Q 004546 538 LRRRGVTSTSINAFVQGIGISRSDS 562 (745)
Q Consensus 538 lrrrG~~PeAI~~fl~~lG~s~~~~ 562 (745)
.... |+|.++|-||++..|...-+
T Consensus 319 ~Lk~-~sp~qLRl~fl~~~wr~~ld 342 (586)
T KOG2007|consen 319 ALKK-YSPRQLRLAFLLHQWRSPLD 342 (586)
T ss_pred HHHh-cCHHHHHHHHHHHHhcCcCC
Confidence 8876 99999999999988876643
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.73 E-value=2.8e-17 Score=167.67 Aligned_cols=184 Identities=20% Similarity=0.140 Sum_probs=140.1
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecCCcc------------cchHHHHHHHHHHHHHc
Q 004546 275 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTNPE------------AEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDTDp~------------re~~e~~~~I~edL~wL 336 (745)
|+.=| +|+|||+|||||+|++++-..+|| .+.| .+.--++|.+.. .....+.+.+.+++++|
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L 81 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRL 81 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 899999999999999999888887 3334 444444555532 23457788899999999
Q ss_pred CCCCCCcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEE
Q 004546 337 GWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR 416 (745)
Q Consensus 337 Gi~pd~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR 416 (745)
|+.+|...+.|++.+.+.+..+.|+++|.+|.-. |..++.
T Consensus 82 ~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~~ 121 (212)
T cd00671 82 DVRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWLD 121 (212)
T ss_pred CCcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEEe
Confidence 9999988899999888889999999999998421 001111
Q ss_pred EEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccc---cccccccccCCccee--ecCchhccchhHHHHHHHHhC
Q 004546 417 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALG 491 (745)
Q Consensus 417 ~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~---fA~~VDD~l~gITHv--lRg~E~~~~~~~q~~L~~aLg 491 (745)
+. + .....|+|+-|. +| .|||. +|+.+++..+++||+ ++|.|+..+.+++..++++||
T Consensus 122 ~~---~--~~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 122 LT---E--FGDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred ch---h--hCCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 10 0 012358888887 55 68998 799999999999999 999999999999999999999
Q ss_pred CC-CCcEEee--ecccCC-Ccccccccc
Q 004546 492 LY-QPYVWEY--SRLNVS-NTVMSKRKL 515 (745)
Q Consensus 492 ~~-~P~~~ef--~rLn~~-g~kLSKRk~ 515 (745)
+. .|...|. +.++.. |.|||||++
T Consensus 185 ~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 185 YDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 86 5555453 666555 899999975
No 43
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=2.9e-14 Score=162.34 Aligned_cols=272 Identities=19% Similarity=0.102 Sum_probs=161.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wL 336 (745)
++|==+|+|||.+||||+|+.+..+.++|. ++..|+.-+||.+.. .....|.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455568999999999999999999888883 445788888888742 23467889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc----------C--CCCHHHHHHhhhccCCCCCCCCCHH----Hh--
Q 004546 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKKMNSPWRDRPIA----ES-- 396 (745)
Q Consensus 337 Gi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~----------C--~cs~eel~~~R~~~~~~~~R~~s~e----e~-- 396 (745)
|+.+|..+++++ |.+...+...+|.++|++|. | +++..++..-+ .+...|.. +++ ++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~--p~~~~~~~-~~~~~~~~~~f 160 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDG--YRCPPTGA-PVEWVEEESYF 160 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCC--CCCCCCCC-cceEEecCeEE
Confidence 999987656655 88888899999999999996 2 33444433210 00001111 000 00
Q ss_pred --hHHHHHHhcCcccCCCeEEEEEecC------CCCCCCCCceEEEE-EecCCCCCCCC------cc----------ccc
Q 004546 397 --LKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW----------CIY 451 (745)
Q Consensus 397 --l~~fe~M~~G~~~~g~~vlR~K~d~------~~~n~~~~D~Vl~R-i~~~~h~~~gd------~w----------~iy 451 (745)
+..|.+.....+..+. .+...+. .--+....|+.++| -..=+.|..++ .| .++
T Consensus 161 ~~l~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 161 FRLSKYQDKLLELYEANP--DFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEcHHHHHHHHHHHHhCC--CccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 0111110000010000 0000000 00012357888888 32211222122 24 122
Q ss_pred cc----------cccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEE-eeecccCCCccccccccccccc
Q 004546 452 PS----------YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVT 520 (745)
Q Consensus 452 PT----------Y~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~-ef~rLn~~g~kLSKRk~~~lv~ 520 (745)
|. +.+ +.|-|.+|+.++. .+...+..+..+++...|..| .++++.++|.|||||+++
T Consensus 239 p~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN---- 306 (511)
T PRK11893 239 PDDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN---- 306 (511)
T ss_pred ccccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc----
Confidence 21 111 1333555555432 122222233445677777544 467888999999999998
Q ss_pred cCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHH
Q 004546 521 NKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 521 ~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (745)
..++..+.+. |.+.++|.|++..+.-..+..++++.+.+..+.
T Consensus 307 -----------~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~ 349 (511)
T PRK11893 307 -----------VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA 349 (511)
T ss_pred -----------EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 4678888877 999999999998866556667888888665443
No 44
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.58 E-value=9.2e-15 Score=167.10 Aligned_cols=227 Identities=20% Similarity=0.200 Sum_probs=157.1
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEEeecCCc-------------ccchHHHHHHHHHH
Q 004546 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDTNP-------------EAEKKEYIDHIEEI 332 (745)
Q Consensus 272 ~g~V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~---~iLRidDTDp-------------~re~~e~~~~I~ed 332 (745)
+++|+.-| +|+|||+|||||+|++++.+.+||. +.|. ++.-++|.+. ....+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999 9999999999999999999999983 4554 5555578873 33467888999999
Q ss_pred HHHcCCCCCCcCCCchhH--HHHHHHHHHHHHcCCcc-cCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCccc
Q 004546 333 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 409 (745)
Q Consensus 333 L~wLGi~pd~i~~qSd~~--~~~ye~A~~LI~~G~AY-~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~ 409 (745)
++|||+.+|...+.|+.+ +.+.+..+.|.++|.+| .-.
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~--------------------------------------- 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESD--------------------------------------- 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeC---------------------------------------
Confidence 999999998766666543 35677888999999998 210
Q ss_pred CCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccc---cccccccccCCccee--ecCchhccchhHHH
Q 004546 410 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYF 484 (745)
Q Consensus 410 ~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~---fA~~VDD~l~gITHv--lRg~E~~~~~~~q~ 484 (745)
|..++++. ..+. -.|+|+.|. +| .|||. +|..++-+.. .+++ |.|.++..+-++..
T Consensus 231 -Ga~~~~~~---~~~~--~~~~vl~ks-------dG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 231 -GALWVRLT---EFGD--DKDRVLIKS-------DG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred -CcEEEEch---hhCC--CCCeEEEEC-------CC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHH
Confidence 11111111 0010 137899887 44 45665 3332222211 2444 78999999999999
Q ss_pred HHHHHhCCCCC--cEEee---ec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCH-------------
Q 004546 485 WLLHALGLYQP--YVWEY---SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 545 (745)
Q Consensus 485 ~L~~aLg~~~P--~~~ef---~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~P------------- 545 (745)
.+.++||+..+ ..+.| +. ++-+|.|||||+|+ ..++.+|.++++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999998644 22444 44 35578999999998 46899999887767
Q ss_pred ---HHHHHHHHhcCccCCCcccCHHHHHHH
Q 004546 546 ---TSINAFVQGIGISRSDSLIRLDRLEYH 572 (745)
Q Consensus 546 ---eAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (745)
.|||.|++.... ..+-.|+|+.+.+.
T Consensus 357 vgidAiR~~~L~~~~-~~~~~Fd~~~~~~~ 385 (507)
T PRK01611 357 VGIDAVRYFDLSRSR-DKDLDFDLDLALSF 385 (507)
T ss_pred hccceeEehhhhcCC-CCCCccCHHHHHhh
Confidence 788887776532 33346888775543
No 45
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.58 E-value=5.6e-16 Score=136.88 Aligned_cols=82 Identities=39% Similarity=0.479 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhccCCCc--chhhccccCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 004546 170 IVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEI 247 (745)
Q Consensus 170 ~vk~~vd~~~~~llGpK~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~ 247 (745)
+||++||+||++||||||++|+++++|+++++.++.... ..........+.++|++||++. ++||+||||++
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~k----- 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENYK----- 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccCC-----
Confidence 589999999999999999999998876643321110001 1111112345678999999997 88999999955
Q ss_pred ccCCCccccccCcHHHHHHh
Q 004546 248 PFSDGSVLICCNTKEVLDKH 267 (745)
Q Consensus 248 ~~~~~~~~~~~~t~~~~~~h 267 (745)
+||+++|.+|
T Consensus 75 ----------pqt~~~L~~h 84 (84)
T PF04557_consen 75 ----------PQTMPLLKKH 84 (84)
T ss_dssp --------------------
T ss_pred ----------cchHHHHhcC
Confidence 3456777666
No 46
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.46 E-value=1.5e-12 Score=140.03 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=138.4
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc------c--------------------chHHH
Q 004546 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------A--------------------EKKEY 325 (745)
Q Consensus 277 tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~------r--------------------e~~e~ 325 (745)
+==||+|||.+||||+++.++-+.++| .+...|+.-+|+.+.. + -..++
T Consensus 5 ~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T cd00668 5 TTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEM 84 (312)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH
Confidence 334899999999999999888887777 3444566777665521 1 12477
Q ss_pred HHHHHHHHHHcCCCCC--Cc--CCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHH
Q 004546 326 IDHIEEIVQWMGWEPF--KI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFE 401 (745)
Q Consensus 326 ~~~I~edL~wLGi~pd--~i--~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe 401 (745)
.+.|.++++.||+..| .. +...+|.+...+...+|.++|++|.-.-.. +.. ..-+-+.+ +-.-++.+
T Consensus 85 ~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~~~ 155 (312)
T cd00668 85 SGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKLLK 155 (312)
T ss_pred HHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHHHH
Confidence 8899999999999766 43 444567777888899999999999743211 000 00000000 00001112
Q ss_pred HHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccC----------------
Q 004546 402 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE---------------- 465 (745)
Q Consensus 402 ~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~---------------- 465 (745)
.+..+...+. ++|..+..==.+..|+.+.|-.. || ...|++++-|=.|=+++
T Consensus 156 ~~~~~~~~p~----~~~~~~~~~l~~~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~ 223 (312)
T cd00668 156 ALRRGKIVPE----HVKNRMEAWLESLLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKD 223 (312)
T ss_pred HHhcCCcCCh----HHHHHHHHHHhCCCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchhhhh
Confidence 2222210000 00000000000124888877421 33 34566666651111110
Q ss_pred --CcceeecCchhc-cchhHHHHHHHHhCCC-C-CcEEeeecccCCC-ccccccccccccccCccCCCCCCCcccHHHHH
Q 004546 466 --NITHSLCTLEFE-TRRASYFWLLHALGLY-Q-PYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (745)
Q Consensus 466 --gITHvlRg~E~~-~~~~~q~~L~~aLg~~-~-P~~~ef~rLn~~g-~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lr 539 (745)
..+--+=|.|.. .+.........+++.+ . ..+|.|++++.+| .|||||+++ ..++..+.
T Consensus 224 ~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~ 288 (312)
T cd00668 224 SYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVV 288 (312)
T ss_pred cCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHHHH
Confidence 011111233333 3333333334456544 2 3567788888887 999999998 46888888
Q ss_pred HcCCCHHHHHHHHHhcCc
Q 004546 540 RRGVTSTSINAFVQGIGI 557 (745)
Q Consensus 540 rrG~~PeAI~~fl~~lG~ 557 (745)
+. +.++|+|.|++..+-
T Consensus 289 ~~-~~~da~R~~l~~~~~ 305 (312)
T cd00668 289 EK-YGADALRYYLTSLAP 305 (312)
T ss_pred HH-cCcHHHHHHHHhcCC
Confidence 87 999999999987763
No 47
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.43 E-value=2.2e-13 Score=130.32 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=102.0
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEEeecCCcccchHHHHHHHHHHHHHcCCCCCCcCCCchhH
Q 004546 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 350 (745)
Q Consensus 276 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~-----~G~~iLRidDTDp~re~~e~~~~I~edL~wLGi~pd~i~~qSd~~ 350 (745)
++..+|+|||.+||||+|.+++.+.+||.+ +..++..+||.+.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 467899999999999999999999999865 8899999999997665443322
Q ss_pred HHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCc
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (745)
Q Consensus 351 ~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D 430 (745)
.++.+++.. .+...|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 111122111 11111111100
Q ss_pred eEEEEEecCCCCCCCCccccccccccccccccccCCc---ceeecCchhccchhHHHHHHHHhCCC-CCcEEeeecccC-
Q 004546 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 505 (745)
Q Consensus 431 ~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gI---THvlRg~E~~~~~~~q~~L~~aLg~~-~P~~~ef~rLn~- 505 (745)
|++.|++|+...++ ||.++|.|+..|...+.++++++|+. .|...+|+++..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 688888899876
Q ss_pred CCccccccc
Q 004546 506 SNTVMSKRK 514 (745)
Q Consensus 506 ~g~kLSKRk 514 (745)
+|.|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 459999995
No 48
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.33 E-value=2.2e-11 Score=139.97 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=75.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 336 (745)
++|--+|.|||.+||||+++.+..+.+|| +..| .|+.-+||.+. ....+.+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999887 3344 56667777653 233568889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+.+|..+++++ |.+.+.+...+|+++|.+|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999987555454 77778889999999999984
No 49
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.30 E-value=8e-11 Score=127.33 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=74.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcC---CEEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERG---GYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~---G~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 336 (745)
++|==+|.|||.+||||+++.++.+.+|| +.. ..++..+||.+. ..-.+.+.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 34555899999999999999999998888 333 456777787753 233568889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+.+|..++.++ |.+...+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999987655554 66677788899999999985
No 50
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.22 E-value=5.3e-11 Score=122.29 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=50.7
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCccc-------------chHHHHHHHHHHHHHcCCCC
Q 004546 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWEP 340 (745)
Q Consensus 279 FaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~r-------------e~~e~~~~I~edL~wLGi~p 340 (745)
..|.|+|.+||||+|++++.+.+|| .+...|+..+||.+..- -...+.+.+.++++.||+.+
T Consensus 26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~ 105 (213)
T cd00672 26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLP 105 (213)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999999999998 34567999999998431 23456666677777777765
Q ss_pred -CCcCCC
Q 004546 341 -FKITYT 346 (745)
Q Consensus 341 -d~i~~q 346 (745)
|..+++
T Consensus 106 ~d~~~rt 112 (213)
T cd00672 106 PDVVPRV 112 (213)
T ss_pred CCcceee
Confidence 444333
No 51
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.19 E-value=1.2e-10 Score=125.79 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=67.6
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcc-------------cchHHHHHHHHHHHHHcC
Q 004546 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMG 337 (745)
Q Consensus 276 ~tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~-------------re~~e~~~~I~edL~wLG 337 (745)
+|==+|.|||.+||||+++++..+.+|| .+...|+.-+||.+.. .-.+++.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444899999999999999999888887 3445688888888732 124688899999999999
Q ss_pred CCCCC--cCCC-ch-hHHHHHHHHHHHHHcCCccc
Q 004546 338 WEPFK--ITYT-SD-YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 338 i~pd~--i~~q-Sd-~~~~~ye~A~~LI~~G~AY~ 368 (745)
+.+|- ...+ +. +.+.......+|.++|.+|.
T Consensus 84 i~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98762 2222 22 22223334459999999985
No 52
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=3.3e-10 Score=131.06 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=75.3
Q ss_pred EEEEeCCCCCCcCchhHHHHH-HHHHHHHH--HcCC---EEEEEeecCCcc-------------cchHHHHHHHHHHHHH
Q 004546 275 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAK--ERGG---YCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 335 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaa-l~n~~~Ar--~~~G---~~iLRidDTDp~-------------re~~e~~~~I~edL~w 335 (745)
++|==+|.|||.|||||+++. +.-+.+|| +..| .|+.-+||.+.. .-..++.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 556668999999999999998 88888887 2334 566666666522 2246788999999999
Q ss_pred cCCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 336 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 336 LGi~pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
||+.+|..++++ +|.+...+...+|+++|++|.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999877777 788889999999999999995
No 53
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.16 E-value=5.6e-10 Score=121.96 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeec----CCcc--------------------------cchHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 324 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidD----TDp~--------------------------re~~e 324 (745)
||+|||.+|||||++.++.+.++|. +...|+.-+|| ++.+ .-..+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999998888882 34456777776 4321 11246
Q ss_pred HHHHHHHHHHHcCC--CCCC--cCCCchhHHHHHHHHHHHHHcCCcccCC
Q 004546 325 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 370 (745)
Q Consensus 325 ~~~~I~edL~wLGi--~pd~--i~~qSd~~~~~ye~A~~LI~~G~AY~C~ 370 (745)
|.+.|.++++.||+ .|+. .|...+|.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 77899999999999 5654 4455688888999999999999999644
No 54
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.15 E-value=2.7e-10 Score=134.13 Aligned_cols=94 Identities=22% Similarity=0.227 Sum_probs=73.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEEeecCCc-------------ccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G---~~iLRidDTDp-------------~re~~e~~~~I~edL~wL 336 (745)
++|==.|.|||.+||||+++++..+.+|| +..| .|+.-.||.+. ......|.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 55666899999999999999999999988 3345 45555555442 223568889999999999
Q ss_pred CCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+.+|..+++++ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999998777776 66666778889999999996
No 55
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.12 E-value=2.1e-09 Score=127.23 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=72.7
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEEeecC-------------CcccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~---~iLRidDT-------------Dp~re~~e~~~~I~edL~wL 336 (745)
++|==+|.|||.+||||+++.+..+.+|| +..|. |+.-.|+. +|......|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 44555789999999999999999999998 34453 44343331 22334568999999999999
Q ss_pred CCCCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+.+|..++++ +|.+...+...+|+++|.+|.
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~ 118 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE 118 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 99998765555 588888899999999999986
No 56
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.09 E-value=1.2e-09 Score=125.45 Aligned_cols=231 Identities=16% Similarity=0.218 Sum_probs=139.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc---------------------------
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE--------------------------- 321 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re--------------------------- 321 (745)
.++.-=+.+|||.+||||++.++..+.+||. +...|+.=-||.|+-|.
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999988888873 44568778888885221
Q ss_pred -----hHHHHHHHHHHHHHcCCCCCCcCCCch-hHH-HHHHHHHHHHH-cCCcccCCCCHHHHHHhhhccCCC---CCCC
Q 004546 322 -----KKEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIR-RGHAYVDHQTPEEIKEYREKKMNS---PWRD 390 (745)
Q Consensus 322 -----~~e~~~~I~edL~wLGi~pd~i~~qSd-~~~-~~ye~A~~LI~-~G~AY~C~cs~eel~~~R~~~~~~---~~R~ 390 (745)
.+.|.+.+.+.++.+|++++- +++++ |-. .|-+.+...++ .+... +-|...++...+. |.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~-~~~t~~y~~g~~~~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~-- 174 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEF-ISATECYKSGRYDEAILTALENRDEIM------EILLPYLGEERQATYSPF-- 174 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEE-EehhhhhccCchHHHHHHHHHhHHHHH------HHHHHhcCCccCCCeeee--
Confidence 245667778889999999873 23333 111 12222322222 22221 2334443321110 11
Q ss_pred CCHHHhhHHHHHHhcCcccCCCeEEEE-EecCCCCCCCCCceEEEEEecCCCC-----CCCC---cccc-cccccccccc
Q 004546 391 RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCI 460 (745)
Q Consensus 391 ~s~ee~l~~fe~M~~G~~~~g~~vlR~-K~d~~~~n~~~~D~Vl~Ri~~~~h~-----~~gd---~w~i-yPTY~fA~~V 460 (745)
+++.++ -|+. .+..+ ..|... --|-|++. +.|. +.|. .|++ ||+==
T Consensus 175 ~pic~~--------cg~~----~~~~~~~~d~~~------~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~rW----- 230 (510)
T PRK00750 175 LPICPK--------CGKV----LTTPVISYDAEA------GTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMRW----- 230 (510)
T ss_pred eeeCCC--------CCcc----ceEEEEEEeCCC------CEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHHH-----
Confidence 111110 0111 01111 112111 12445442 2221 1121 3433 33211
Q ss_pred ccccCCcceeecCchhcc-chhHHHHHHH-HhCCCCCcEEeeecccCC-CccccccccccccccCccCCCCCCCcccHHH
Q 004546 461 VDSIENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAG 537 (745)
Q Consensus 461 DD~l~gITHvlRg~E~~~-~~~~q~~L~~-aLg~~~P~~~ef~rLn~~-g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~ 537 (745)
...||+....|.||.. +...+..+++ .||...|....|+++..+ |.|||||+++ ..++..
T Consensus 231 --~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN---------------~i~~~d 293 (510)
T PRK00750 231 --AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGN---------------VITIED 293 (510)
T ss_pred --HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCC---------------ccCHHH
Confidence 2468999999999999 9999999999 999999998889988776 9999999998 357888
Q ss_pred HHHcCCCHHHHHHHHHhc
Q 004546 538 LRRRGVTSTSINAFVQGI 555 (745)
Q Consensus 538 lrrrG~~PeAI~~fl~~l 555 (745)
+.+. ++|+++|.|+..-
T Consensus 294 ~l~~-~~pd~lR~~l~~~ 310 (510)
T PRK00750 294 WLEY-APPESLRLFMFAR 310 (510)
T ss_pred HHHH-CCHHHHHHHHHhC
Confidence 8876 9999999887643
No 57
>PLN02224 methionine-tRNA ligase
Probab=99.08 E-value=1.3e-09 Score=127.44 Aligned_cols=95 Identities=18% Similarity=0.068 Sum_probs=73.5
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEEeecCC-------------cccchHHHHHHHHHHHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQW 335 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G---~~iLRidDTD-------------p~re~~e~~~~I~edL~w 335 (745)
-++|==+|.|||.+|||||++.++.+.+||. ..| .|+--+||.+ |.....++...+.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 3667778899999999999999999999983 344 4555566654 122235677888899999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 336 LGi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
||+.+|..+++++ |....++...+|.++|+.|.
T Consensus 151 l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~ 185 (616)
T PLN02224 151 LDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYR 185 (616)
T ss_pred cCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999998777666 66666677789999999886
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.07 E-value=7e-09 Score=114.01 Aligned_cols=246 Identities=17% Similarity=0.213 Sum_probs=144.9
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEEeecCCcccc--------------------------
Q 004546 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEAE-------------------------- 321 (745)
Q Consensus 273 g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar-----~~~G~~iLRidDTDp~re-------------------------- 321 (745)
.+++.-=+++|||.+||||++.++..+.+|| .+...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 3566666889999999999999998888887 355578888888876222
Q ss_pred ----hHHHHHHHHHHHHHcCCCCCCcCCCchhHHHHH-HHHH-HHHHcCCcccCCCCHHHHHHhhhccCCCCCC-CCCHH
Q 004546 322 ----KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELY-ELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPIA 394 (745)
Q Consensus 322 ----~~e~~~~I~edL~wLGi~pd~i~~qSd~~~~~y-e~A~-~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R-~~s~e 394 (745)
.+.|...+.+.|+.||+.++-+..+..|-...+ +.+. .|-+.+... +-|...++...+..|- -.++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 346677788889999999874433333333222 3332 344444432 4455554421111000 01111
Q ss_pred HhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCC-----CCCC---cccc-ccccccccccccccC
Q 004546 395 ESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHCIVDSIE 465 (745)
Q Consensus 395 e~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~-----~~gd---~w~i-yPTY~fA~~VDD~l~ 465 (745)
++ -|... ..++ ..|.. .--|-|++. ..|. +.|. .|++ ||+== ...
T Consensus 173 ~~--------cg~~~--~~v~--~~d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW-------~~l 226 (353)
T cd00674 173 EK--------CGKDT--TTVE--AYDAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW-------AIL 226 (353)
T ss_pred CC--------cCcce--eEEE--EEeCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-------hhc
Confidence 10 01100 0010 11111 112555552 2331 1111 3433 33211 235
Q ss_pred CcceeecCchhccc---hhHHHHHHH-HhCCCCCcEEeeecccCCCc-cccccccccccccCccCCCCCCCcccHHHHHH
Q 004546 466 NITHSLCTLEFETR---RASYFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 540 (745)
Q Consensus 466 gITHvlRg~E~~~~---~~~q~~L~~-aLg~~~P~~~ef~rLn~~g~-kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrr 540 (745)
||+-=+-|.||..+ -..-..+++ .||...|....|+.+.+.|. |||||+++ ..++..+.+
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn---------------vI~~~dll~ 291 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN---------------VITPSDWLE 291 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC---------------cCCHHHHHH
Confidence 67776778888888 555566777 89998898777888777765 99999998 468999888
Q ss_pred cCCCHHHHHHHHHhcCccCCCcccCH
Q 004546 541 RGVTSTSINAFVQGIGISRSDSLIRL 566 (745)
Q Consensus 541 rG~~PeAI~~fl~~lG~s~~~~~~~~ 566 (745)
. +.|++||.|++...-...+-.+++
T Consensus 292 ~-~~~dalR~~~l~~~~~~~~i~Fd~ 316 (353)
T cd00674 292 V-APPEVLRYLYARRKNPEKHIGFDL 316 (353)
T ss_pred H-hChHHHHHHHHhCCCCCCCCCcCh
Confidence 7 999999999987772222334554
No 59
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.90 E-value=2.8e-08 Score=110.34 Aligned_cols=92 Identities=26% Similarity=0.287 Sum_probs=65.4
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c-----------------------ch
Q 004546 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A-----------------------EK 322 (745)
Q Consensus 277 tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r-----------------------e~ 322 (745)
|==+|.|||.|||||+++.++.+.+|| +..|.-++.+-.+|.- + -.
T Consensus 6 ~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T cd00817 6 DTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWK 85 (382)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHH
Confidence 334899999999999999999999998 3446544444444420 0 12
Q ss_pred HHHHHHHHHHHHHcCCCCC--CcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 323 KEYIDHIEEIVQWMGWEPF--KITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 323 ~e~~~~I~edL~wLGi~pd--~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
.++.+.+.++++.||+..| ..++++ +|.+.......+|.++|++|.
T Consensus 86 ~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 86 EESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4678889999999998644 544333 354555566689999999987
No 60
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.88 E-value=1.8e-08 Score=117.21 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=42.5
Q ss_pred cCchhccchhHHHHHHHHhCCCCCc---EEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHc
Q 004546 472 CTLEFETRRASYFWLLHALGLYQPY---VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (745)
Q Consensus 472 Rg~E~~~~~~~q~~L~~aLg~~~P~---~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrr 541 (745)
-|.++..+-.+-..+.++||+..+. ...|+.++.+|.+||+|+|+ ..||.+|.+.
T Consensus 331 ~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~---------------~v~l~dLlde 388 (562)
T PRK12451 331 VGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGR---------------VVLLEEVLEE 388 (562)
T ss_pred eCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCC---------------eeEHHHHHHH
Confidence 4778888888888888999986443 23357788899999999997 4688888864
No 61
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.9e-08 Score=116.10 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=73.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------cccchHHHHHHHHHHHHH
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 335 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------p~re~~e~~~~I~edL~w 335 (745)
-++|==-|.|||.+||||+.+.+..+.+|| +..|.=++=+.-|| |..-..++.+.+.++.+|
T Consensus 7 ~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~ 86 (558)
T COG0143 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKA 86 (558)
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 366777899999999999999999999999 46676666666666 233356778889999999
Q ss_pred cCCCCCCcCC--CchhHHHHHHHHHHHHHcCCccc
Q 004546 336 MGWEPFKITY--TSDYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 336 LGi~pd~i~~--qSd~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+|..|...+ .++|-+.-.+.-.+|.++|..|.
T Consensus 87 l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~ 121 (558)
T COG0143 87 LNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL 121 (558)
T ss_pred hCCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence 9999997443 44455556677789999999885
No 62
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.87 E-value=1.2e-07 Score=114.12 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=68.9
Q ss_pred EEEEeCCCCCCcCchhHHHH-HHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHH
Q 004546 275 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 335 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRa-al~n~~~Ar--~~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~w 335 (745)
++|==.|.|||.+||||+++ .+..+.+|| +..|.=++-+.-||. ......+.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56667899999999999995 566899998 345765666666662 22245667778888999
Q ss_pred cCCCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 336 LGi~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|||.+|..+++++ |....++...+|.++|..|.
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~ 134 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSE 134 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999998655553 44445566678999998775
No 63
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.87 E-value=2.7e-08 Score=110.91 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=66.7
Q ss_pred cccCCcceeecCchhc-cchhHHHHHHHHhCCCCCcEE-eeecccCCCccccccccccccccCccCCCCCCCcccHHHHH
Q 004546 462 DSIENITHSLCTLEFE-TRRASYFWLLHALGLYQPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (745)
Q Consensus 462 D~l~gITHvlRg~E~~-~~~~~q~~L~~aLg~~~P~~~-ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lr 539 (745)
|..-.+.|+| |.|.. -|+...-.++-++|+..|... -++++.++|.|||||+++. .....+.
T Consensus 279 ~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~---------------i~~~~~~ 342 (391)
T PF09334_consen 279 DSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNV---------------IWPDDLL 342 (391)
T ss_dssp T--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTES---------------SBHHHHH
T ss_pred cCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCcc---------------cCHHHHH
Confidence 3444566765 66643 233333344557888888633 3577999999999999873 4677788
Q ss_pred HcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhcc
Q 004546 540 RRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNK 579 (745)
Q Consensus 540 rrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~ 579 (745)
++ |.++++|.||+..+.-..+..++++.|.+.+...|..
T Consensus 343 ~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~ 381 (391)
T PF09334_consen 343 EE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELAN 381 (391)
T ss_dssp HH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCC
T ss_pred Hh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 77 9999999999999988888899999988877766544
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.78 E-value=3.8e-08 Score=114.57 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=35.8
Q ss_pred ecCchhccchhHHHHHHHHhCCCCCc-EEeeecccCCCcccccccccc
Q 004546 471 LCTLEFETRRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNF 517 (745)
Q Consensus 471 lRg~E~~~~~~~q~~L~~aLg~~~P~-~~ef~rLn~~g~kLSKRk~~~ 517 (745)
+-|.++..+-.+-..++.+||++.|. ..|+++--+.+.+||||+|+.
T Consensus 333 V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn~ 380 (566)
T TIGR00456 333 VWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNV 380 (566)
T ss_pred EecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCce
Confidence 35788888888888888999997774 445555445668999999873
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.71 E-value=5.5e-07 Score=103.62 Aligned_cols=247 Identities=18% Similarity=0.233 Sum_probs=137.0
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccch-------------------------
Q 004546 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAEK------------------------- 322 (745)
Q Consensus 273 g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re~------------------------- 322 (745)
+.++.-=+=+|||.+||||++..+..+.+||. +.-.||.=-||-||-|.+
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35666667779999999999999888888873 455788888888754432
Q ss_pred -----HHHHHHHHHHHHHcCCCCCC----cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHH----HHhhhccCCCCCC
Q 004546 323 -----KEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI----KEYREKKMNSPWR 389 (745)
Q Consensus 323 -----~e~~~~I~edL~wLGi~pd~----i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel----~~~R~~~~~~~~R 389 (745)
+.|...+.+.|+-||++++- ..|.|..|+..... .+++ ++++ ...++...+..|-
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~---~L~~---------~~~I~~il~~~~~~~~~~~~~ 165 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKI---ALDH---------RKEISEILNEYRTSKLEENWY 165 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHH---HHHh---------HHHHHHHHHHhcCCccCCCce
Confidence 24555667778888886532 22333333322222 2211 1222 2222211110000
Q ss_pred -CCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCC-----CCCC---cccc-ccccccccc
Q 004546 390 -DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWCI-YPSYDYAHC 459 (745)
Q Consensus 390 -~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~-----~~gd---~w~i-yPTY~fA~~ 459 (745)
-.++.++ -|+... .++ ..| ..+.|-|++. +.|. ..|. .|++ ||+==.
T Consensus 166 P~~pic~~--------cGrv~~--~~~--~~~-------~~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~RW~--- 222 (515)
T TIGR00467 166 PISVFCEN--------CGRDTT--TVN--NYD-------NEYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPARWK--- 222 (515)
T ss_pred eeeeecCC--------cCccCc--eEE--Eec-------CCceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhhHh---
Confidence 0111110 121100 011 111 0114666653 3331 1111 3543 333222
Q ss_pred cccccCCcceeecCchhccchhHH---HHHH-HHhCCCCCc--EEeeecccCCCccccccccccccccCccCCCCCCCcc
Q 004546 460 IVDSIENITHSLCTLEFETRRASY---FWLL-HALGLYQPY--VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLM 533 (745)
Q Consensus 460 VDD~l~gITHvlRg~E~~~~~~~q---~~L~-~aLg~~~P~--~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~ 533 (745)
..||+-=--|.||..+.++| ..++ ++||.+.|. .+++-+|..+|.|||||+|+ ..
T Consensus 223 ----~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~i 283 (515)
T TIGR00467 223 ----IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VI 283 (515)
T ss_pred ----hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------Cc
Confidence 24555555688888766444 3355 489888775 44445677788899999998 57
Q ss_pred cHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHh
Q 004546 534 TLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 576 (745)
Q Consensus 534 TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~ 576 (745)
|++.+.+. +.|+++|.|++.-...+.- .++++.| ++...+
T Consensus 284 tl~dll~~-~~pdalR~~~l~~~~~~~l-dFd~~~l-~~~dey 323 (515)
T TIGR00467 284 SVKDVLEV-YTPEITRFLFARTKPEFHI-SFDLDVI-KLYEDY 323 (515)
T ss_pred cHHHHHHH-cCHHHHHHHHhccCCCCCC-cCCHHHH-HHHHHH
Confidence 99999987 9999999997766654443 3666666 444443
No 66
>PLN02286 arginine-tRNA ligase
Probab=98.59 E-value=6.8e-07 Score=104.39 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=35.8
Q ss_pred CeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC
Q 004546 273 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 317 (745)
Q Consensus 273 g~V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD 317 (745)
.+|++=| +|+|||+|||||+|++++-..+|| .+-|.=+.|.--+|
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyin 164 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVG 164 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeec
Confidence 4789999 999999999999999999998988 44555555544443
No 67
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.56 E-value=4.6e-07 Score=96.95 Aligned_cols=171 Identities=20% Similarity=0.168 Sum_probs=118.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~~ 352 (745)
.|||.|||||...|+.++...+..|..+++.|.|. +..++..++...+..++.++|++|++ +.+||++. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 58999999999999999999998899999999998 34556678888899999999999964 67899987 4
Q ss_pred HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceE
Q 004546 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (745)
Q Consensus 353 ~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~V 432 (745)
+++.+- -+.|.|+..+++.. ..+ .++..+ . .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~f----------------k~~~~~-------------~-~~~~------- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TGF----------------KDKSAQ-------------G-ESVN------- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cch----------------hhhhcc-------------C-CCCc-------
Confidence 555433 26788988887532 111 111000 0 0000
Q ss_pred EEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhC------CCCCcEEee--ecc-
Q 004546 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SRL- 503 (745)
Q Consensus 433 l~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg------~~~P~~~ef--~rL- 503 (745)
++. -.||.-+-|..+ +.+.++|..|.|-..+-..-.-+.+.++ +..|..... .++
T Consensus 120 ~g~-------------~~YP~lqaaDil---~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 IGL-------------LTYPVLQAADIL---LYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred chh-------------hcchHHHHhhhh---hccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 000 124444433332 4556889999998888887788888888 667865554 443
Q ss_pred cCCC--cccccccc
Q 004546 504 NVSN--TVMSKRKL 515 (745)
Q Consensus 504 n~~g--~kLSKRk~ 515 (745)
.++| .|||||.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5665 59999987
No 68
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.51 E-value=4.8e-06 Score=101.61 Aligned_cols=92 Identities=27% Similarity=0.308 Sum_probs=68.3
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------------c--------------ch
Q 004546 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------A--------------EK 322 (745)
Q Consensus 277 tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~------------------r--------------e~ 322 (745)
+==||.+||.||||||++.++-+.+|| +..|.-++..-.+|.. + -.
T Consensus 38 ~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~ 117 (861)
T TIGR00422 38 DIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWK 117 (861)
T ss_pred EeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHH
Confidence 334899999999999999999999998 5678888887777721 0 03
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 323 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 323 ~e~~~~I~edL~wLGi~--pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
.+|...|.+.++.||+. |+..+++.| |.........+|.++|+.|.
T Consensus 118 ~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 118 EESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 56788999999999964 656555544 33333344568999999886
No 69
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.2e-06 Score=97.54 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=118.4
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-ccchHHHHHHHHHHHHHcCCCCC-CcCCC
Q 004546 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPF-KITYT 346 (745)
Q Consensus 272 ~g~V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-~re~~e~~~~I~edL~wLGi~pd-~i~~q 346 (745)
+.+|+.=| +|+|||+|||||+|++++-..+|| ..-|.=+.|.--+|. .+...-..-+ +...|.+.. ...-.
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~----~~~~~~e~~~~~~~~ 191 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALS----YEKRGREALGLTPEP 191 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHH----HHHhccccccCCCCc
Confidence 35899999 999999999999999999999999 333433444333332 1222122211 222222211 01111
Q ss_pred chhHHHHH-HHHHHHHHcCCc-----------------c------cCCCCHHHHHHhhh---------ccC---CCCCCC
Q 004546 347 SDYFQELY-ELAVELIRRGHA-----------------Y------VDHQTPEEIKEYRE---------KKM---NSPWRD 390 (745)
Q Consensus 347 Sd~~~~~y-e~A~~LI~~G~A-----------------Y------~C~cs~eel~~~R~---------~~~---~~~~R~ 390 (745)
-.|+..+| +.++.|-+.... + .|.- .+..++. ..+ ..-.++
T Consensus 192 ~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~---~l~~~k~~l~~l~V~fD~~~~E~e~~~~ 268 (577)
T COG0018 192 DGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDL---SLEGIKETLDRLGVKFDVYDSEGESFYN 268 (577)
T ss_pred chHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHH---HHHHHHHHHHHhCcccceeeccchhhhc
Confidence 12333333 444444443321 1 1111 1111111 011 112233
Q ss_pred CCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcce-
Q 004546 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITH- 469 (745)
Q Consensus 391 ~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITH- 469 (745)
-..++.+..+++.-.....+|..++.+--.. ......|.|+-|. +|+. .|-|=|+|...+=.-.|-+.
T Consensus 269 ~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt~--lY~t~DIAy~~~K~~~~~d~~ 337 (577)
T COG0018 269 GKVEKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGTY--LYFTRDIAYHLYKFERGFDKL 337 (577)
T ss_pred ccHHHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCCe--eeehhHHHHHHHHHhcCCCEE
Confidence 3455555444433222223455544442100 1222358888887 4431 23333444433222122222
Q ss_pred -eecCchhccchhHHHHHHHHhCCCCCc-EEe---eeccc-CCCccccccccccccccCccCCCCCCCcccHHHHHHc
Q 004546 470 -SLCTLEFETRRASYFWLLHALGLYQPY-VWE---YSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (745)
Q Consensus 470 -vlRg~E~~~~~~~q~~L~~aLg~~~P~-~~e---f~rLn-~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrr 541 (745)
-+-|.||..+-.+-..++..+|+..+. +.. |+.++ -+|.|||||.|. ..||+.+.+.
T Consensus 338 IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~---------------~vtl~dllde 400 (577)
T COG0018 338 IYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDE 400 (577)
T ss_pred EEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc---------------eEEHHHHHHH
Confidence 235888888888877778889987663 222 23443 478999999997 4688887653
No 70
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.39 E-value=3.4e-06 Score=93.03 Aligned_cols=47 Identities=32% Similarity=0.568 Sum_probs=38.5
Q ss_pred CCeEEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc
Q 004546 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP 318 (745)
Q Consensus 272 ~g~V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp 318 (745)
+.+|++=| +|+|||+|||||+|++++-..+|| .+.|.=+.|.--+|.
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD 68 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGD 68 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBT
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECC
Confidence 45799999 999999999999999999999999 678888888877763
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.23 E-value=8.4e-06 Score=89.76 Aligned_cols=246 Identities=20% Similarity=0.233 Sum_probs=111.9
Q ss_pred HHHHHhhhh--cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEEeecCCcccc-------------
Q 004546 262 EVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------- 321 (745)
Q Consensus 262 ~~~~~h~~~--~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~-----~~G~~iLRidDTDp~re------------- 321 (745)
++++++.+. .++.++.-=.=+|+|..||||+|-++..+..++. ...++|+-.||.|+-|.
T Consensus 10 ~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~y 89 (360)
T PF01921_consen 10 EIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKY 89 (360)
T ss_dssp HHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCC
T ss_pred HHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHh
Confidence 445444332 3467777778899999999999999998888873 33479999999996432
Q ss_pred ------------------hHHHHHHHHHHHHHcCCCCCC----cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHh
Q 004546 322 ------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 379 (745)
Q Consensus 322 ------------------~~e~~~~I~edL~wLGi~pd~----i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~ 379 (745)
.+.|...+.+.|+.||+++.- ..|+|..|+.....|.+ +.... .+-|...
T Consensus 90 lg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~--~~~~I------~~Il~~~ 161 (360)
T PF01921_consen 90 LGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALE--NRDEI------REILNEY 161 (360)
T ss_dssp TTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHH--THHHH------HHHHHHH
T ss_pred cCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHH--hHHHH------HHHHHHh
Confidence 346677778889999998642 33555444433322211 00000 1122333
Q ss_pred hhccCCCCCC-CCCHHHhhHHHHHHhcCcccCCCeEEEE-EecCCCCCCCCCceEEEEEecCCCC-----CCCC---ccc
Q 004546 380 REKKMNSPWR-DRPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD---KWC 449 (745)
Q Consensus 380 R~~~~~~~~R-~~s~ee~l~~fe~M~~G~~~~g~~vlR~-K~d~~~~n~~~~D~Vl~Ri~~~~h~-----~~gd---~w~ 449 (745)
|+...+..|- -.++.++ -|+. .+..+ ..|.. ..-|-|++....|. +.|. .|+
T Consensus 162 ~~~~~~~~y~Pf~piC~~--------cGri----~tt~v~~~d~~------~~~v~Y~c~~cG~~g~~~i~~g~gKL~Wk 223 (360)
T PF01921_consen 162 RGRERPETYSPFLPICEK--------CGRI----DTTEVTEYDPE------GGTVTYRCEECGHEGEVDITGGNGKLQWK 223 (360)
T ss_dssp HHHT--TT--SEEEEETT--------TEE------EEEEEEE--S------SSEEEEE--TTS---EEETTTT-EEE-HH
T ss_pred cCcCCCCCeeeeeeeccc--------cCCc----ccceeeEeecC------CCEEEEEecCCCCEEEEecCCCcccccCC
Confidence 3211111000 0111110 0110 01111 11111 45677887555553 2221 343
Q ss_pred c-ccccccccccccccCCcceeecCchhcc---chhHHHHHH-HHhCCCCCcEEeeecccCCCc-cccccccccccccCc
Q 004546 450 I-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKY 523 (745)
Q Consensus 450 i-yPTY~fA~~VDD~l~gITHvlRg~E~~~---~~~~q~~L~-~aLg~~~P~~~ef~rLn~~g~-kLSKRk~~~lv~~g~ 523 (745)
+ ||+== +..||+-=--|+||.+ |......|+ +.||..+|....|....++|. |||||+++
T Consensus 224 vDW~mRW-------~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~------- 289 (360)
T PF01921_consen 224 VDWPMRW-------AALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN------- 289 (360)
T ss_dssp HHHHHHH-------HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES------------------
T ss_pred CcChhhh-------hhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC-------
Confidence 3 33211 1345665556888888 777778899 789999999888887666555 99999998
Q ss_pred cCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcC
Q 004546 524 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 556 (745)
Q Consensus 524 v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG 556 (745)
.+|++...+- ++||.|+.|+..--
T Consensus 290 --------~~t~~e~L~~-~~PE~lr~l~~~~~ 313 (360)
T PF01921_consen 290 --------GITPEEWLEY-APPESLRYLMARTK 313 (360)
T ss_dssp -----------HHHHHTT-S-HHHHHHHHHCS-
T ss_pred --------ccCHHHHHHh-cCHHHHHHHHcccC
Confidence 3699999876 88999998887533
No 72
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.95 E-value=5.7e-05 Score=82.76 Aligned_cols=170 Identities=23% Similarity=0.273 Sum_probs=107.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----cc----cchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p~----re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~ 351 (745)
.|||.+||||.-.++.+|..- +.|..+++=|-|.- +. .........+..++-.+|++|++ +.+||++.
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 688999999999999988766 56666666666642 11 12334455566777789999985 78899986
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCce
Q 004546 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (745)
Q Consensus 352 ~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~ 431 (745)
.+++.+-.| -|+++-.+++.. ..+ .+++. ..+.+
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~~----k~k~~-----------------------------~~~~~---- 121 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQF----KDKSQ-----------------------------AENVP---- 121 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cCc----chhcc-----------------------------CCCCC----
Confidence 466655443 567776665422 111 11100 00000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhC------CCCCcEEee---ec
Q 004546 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY---SR 502 (745)
Q Consensus 432 Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg------~~~P~~~ef---~r 502 (745)
.| ...||..+-|.++ +.+.++|..|.|-..+-..-.-+.+.++ +..|...+. ++
T Consensus 122 ------------~g--~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 122 ------------IG--LFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred ------------ch--hhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 01 1237777766655 6678899999887766666666677777 556654432 23
Q ss_pred c-cCCCccccccccc
Q 004546 503 L-NVSNTVMSKRKLN 516 (745)
Q Consensus 503 L-n~~g~kLSKRk~~ 516 (745)
| .++|+|||||..+
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 3 5567899999874
No 73
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.89 E-value=0.00012 Score=81.37 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=111.9
Q ss_pred CcHHHHHHhhhh-cCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCc-------ccchHHHHHHHH
Q 004546 259 NTKEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYIDHIE 330 (745)
Q Consensus 259 ~t~~~~~~h~~~-~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp-------~re~~e~~~~I~ 330 (745)
...+.+..+++. ..-.+.|=|.| ||.+||||.-+ +.++..-...|..+++-|-|... ..+..++...+.
T Consensus 52 rd~d~il~~~~~~~~~~iytG~~P--SG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~ 128 (368)
T PRK12285 52 RDYDKILEAYRNGKPFAVYTGFMP--SGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYI 128 (368)
T ss_pred CCHHHHHHHHhcCCCeEEEEccCC--CCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHH
Confidence 334555555543 22345566655 58999999864 55555555567777777777621 112334455567
Q ss_pred HHHHHcCCCCCC--cCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcc
Q 004546 331 EIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 408 (745)
Q Consensus 331 edL~wLGi~pd~--i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~ 408 (745)
.++-.+|++|++ ++.||++.+ +++.+..| .|..|-.+++.. .++. .+
T Consensus 129 ~~~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~-----~~---------------- 177 (368)
T PRK12285 129 LDLIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFT-----GE---------------- 177 (368)
T ss_pred HHHHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCC-----CC----------------
Confidence 788899999985 789999875 77777655 455565655432 1110 00
Q ss_pred cCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccc---cccCCcceeecCchhccchhHHHH
Q 004546 409 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRASYFW 485 (745)
Q Consensus 409 ~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VD---D~l~gITHvlRg~E~~~~~~~q~~ 485 (745)
.+ ++ ...||.-+-|.++- |.-..-++|..|.|-..+-..-.-
T Consensus 178 ---------------~~-------~g-------------~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRd 222 (368)
T PRK12285 178 ---------------TN-------IG-------------HIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRD 222 (368)
T ss_pred ---------------Cc-------hh-------------hhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHH
Confidence 00 00 01255544444331 101345688888876655555455
Q ss_pred HHHHh----CCCCCcEEeeecc-cCCCccccccccc
Q 004546 486 LLHAL----GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (745)
Q Consensus 486 L~~aL----g~~~P~~~ef~rL-n~~g~kLSKRk~~ 516 (745)
+...+ |+..|...+..++ .++|+|||||..+
T Consensus 223 iA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~ 258 (368)
T PRK12285 223 IAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPE 258 (368)
T ss_pred HHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCC
Confidence 56666 8888875544444 7889999999843
No 74
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.80 E-value=3.7e-05 Score=93.31 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=70.0
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~wL 336 (745)
+++==+|.|||.|||||+++.++-+.+|| +..|.-++.+-.+|. ..-..++.+.|.++++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 55555799999999999999999999998 455666665555542 223468899999999999
Q ss_pred CCC--CCCcCC--CchhHHHHHHHHHHHHHcCCccc
Q 004546 337 GWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~--pd~i~~--qSd~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+. |+..+. ..+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 444444 33455555566779999999986
No 75
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00018 Score=79.74 Aligned_cols=274 Identities=18% Similarity=0.174 Sum_probs=140.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------cchHHHHHHHHH----HHHHcCCCCCCc
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------AEKKEYIDHIEE----IVQWMGWEPFKI 343 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~------------re~~e~~~~I~e----dL~wLGi~pd~i 343 (745)
.||-..||||+.+.++.+.+|| ...|.-+.=.+.||-- +.-.++.+.|-+ --+-+|+..+..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 4788899999999999999998 4678877777888831 223344444433 344569988876
Q ss_pred CCCch--hHHHHHHHHHHHHHcCCccc-------C-----CCCHHHHHHhhh-c--------cCCCCCCCCCHHHh----
Q 004546 344 TYTSD--YFQELYELAVELIRRGHAYV-------D-----HQTPEEIKEYRE-K--------KMNSPWRDRPIAES---- 396 (745)
Q Consensus 344 ~~qSd--~~~~~ye~A~~LI~~G~AY~-------C-----~cs~eel~~~R~-~--------~~~~~~R~~s~ee~---- 396 (745)
.+++| |.....++=..+.++|..|. | |-.+.++.+.-. + +.++.||. |+|
T Consensus 129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr 205 (578)
T KOG0436|consen 129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR 205 (578)
T ss_pred eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence 56654 55555566667788888775 2 222222222211 0 11111111 111
Q ss_pred hHHHHH----HhcCcccCCCeEEEEEecCCCCCCCCCceEEEEEecCCC---CCCCCc------c----------ccccc
Q 004546 397 LKLFED----MRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH---PHAGDK------W----------CIYPS 453 (745)
Q Consensus 397 l~~fe~----M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h---~~~gd~------w----------~iyPT 453 (745)
|..|.+ ..++.-.--....+..+-++.-...+.|+-+-|-+..-| |.-||+ | .|||-
T Consensus 206 LSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~ 285 (578)
T KOG0436|consen 206 LSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPN 285 (578)
T ss_pred HHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCc
Confidence 011111 111100000000000000000011245555544221100 111221 2 12331
Q ss_pred --cccccccccccCCcceeecCchhccchhHH-HHHHHHhCCCCCcE-EeeecccCCCccccccccccccccCccCCCCC
Q 004546 454 --YDYAHCIVDSIENITHSLCTLEFETRRASY-FWLLHALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDD 529 (745)
Q Consensus 454 --Y~fA~~VDD~l~gITHvlRg~E~~~~~~~q-~~L~~aLg~~~P~~-~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDD 529 (745)
-+.-..+.---=.-.||| |+|.+---..| -.++=+-|+..|.. .-|+|...+|.||||+.|+.. |
T Consensus 286 ~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv----------d 354 (578)
T KOG0436|consen 286 KQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----------D 354 (578)
T ss_pred hhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc----------C
Confidence 000000000000123665 66544222222 11222458888864 457899999999999999853 4
Q ss_pred CCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHH
Q 004546 530 PCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 530 PRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (745)
| ..|.++ |.+.++|.|++.-|.-..+..++.++|......
T Consensus 355 P-----~~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~ 394 (578)
T KOG0436|consen 355 P-----FELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA 394 (578)
T ss_pred H-----HHHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHH
Confidence 4 345555 889999999999998888888888887765533
No 76
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.69 E-value=9.2e-05 Score=90.31 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=68.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~wL 336 (745)
+++=-+|.|||.|||||+++.++.+.+|| +..|.-++..-.+|. ..-..++.+.|.+.++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666999999999999999999999998 456766666655552 122457889999999999
Q ss_pred CCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 337 GWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~--pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|+. |+..+.+++ |....+....+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 555554444 33333334468999999886
No 77
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00042 Score=75.42 Aligned_cols=183 Identities=20% Similarity=0.191 Sum_probs=116.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-------c-ccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-------p-~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~ 351 (745)
-|||-|||||.-.++.||...+...+.|+.=|-|.. + +.....+...+..++=.+||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 589999999999999999988877678888787753 2 133455666666677778999986 789999765
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCce
Q 004546 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (745)
Q Consensus 352 ~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~ 431 (745)
+++.+-.| -|..+--+++.. .++. +..+ .+..
T Consensus 93 -~~eLa~~l-------~~~~~~gel~r~--~~fK----------------dk~~------------------~~~~---- 124 (314)
T COG0180 93 -HAELAWLL-------SCVTNFGELERM--TQFK----------------DKSA------------------KKGE---- 124 (314)
T ss_pred -HHHHHHHH-------HccCcHHHHHhh--cCcc----------------hhhh------------------cccc----
Confidence 77766544 566666666543 1111 0000 0000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhC------CCCCcEEeee--c-
Q 004546 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEYS--R- 502 (745)
Q Consensus 432 Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg------~~~P~~~ef~--r- 502 (745)
.+ . .| .-.||.-.-|..+ +-+-++|=.|.|-..|-....-|.+.++ +..|...... +
T Consensus 125 ---~~-~-----~G--l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 125 ---SI-P-----IG--LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred ---cc-c-----cc--chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 0 00 1236666555543 3345777788888777777777777776 5556543333 4
Q ss_pred ccCCC-ccccccccccccccCccCCCCCCC
Q 004546 503 LNVSN-TVMSKRKLNFLVTNKYVDGWDDPC 531 (745)
Q Consensus 503 Ln~~g-~kLSKRk~~~lv~~g~v~gWDDPR 531 (745)
..++| .|||||..+.. +.=+|||.
T Consensus 191 ~gL~g~~KMSkS~~ns~-----I~L~D~~~ 215 (314)
T COG0180 191 PGLDGPGKMSKSDPNSA-----IFLLDDPK 215 (314)
T ss_pred cCCCCCCcccccCCCCe-----eeccCCHH
Confidence 36778 89999998832 33356664
No 78
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.62 E-value=0.00091 Score=71.38 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=128.5
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----------cchHHHHHHHHHHHHHcCCC--CC-
Q 004546 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PF- 341 (745)
Q Consensus 282 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----------re~~e~~~~I~edL~wLGi~--pd- 341 (745)
.||| .+||||.-.++ ++..-...|..++.=|-|. ||. .+.......+..++..+|+. |+
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 99999998764 4444444565666666552 342 12345667788889999996 76
Q ss_pred -CcCCCchhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEec
Q 004546 342 -KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (745)
Q Consensus 342 -~i~~qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d 420 (745)
.+..||+..+.+| ...+++ +-|+++-.++...-. ..+ .+..+
T Consensus 87 ~~i~~~s~~~~~l~--~~~~l~----l~~~~~~~~l~~~~~-----------~k~------r~~~~-------------- 129 (269)
T cd00805 87 AKFVNNSDWLLSLY--TLDFLR----LGKHFTVNRMLRRDA-----------VKV------RLEEE-------------- 129 (269)
T ss_pred eEEEEchHhhccCC--HHHHHH----HHhhCcHHHHHHHHH-----------HHH------HHhcC--------------
Confidence 4788999876522 222222 456777776653311 000 00000
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCCCCcEEee
Q 004546 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 500 (745)
Q Consensus 421 ~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef 500 (745)
.+.++ | --.||..+-+..+ ..+.++++.|.|-..+-..-.-+.+.++...|....+
T Consensus 130 ---~~~~~----------------~--~~~YP~lQaaDi~---~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 130 ---EGISF----------------S--EFIYPLLQAYDFV---YLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred ---CCCcH----------------H--HHHHHHHHHhhHH---HHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 00000 0 0125554444433 3456888999887777777777778888888876666
Q ss_pred ecc-cCCCccccccccccc-cccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhh
Q 004546 501 SRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (745)
Q Consensus 501 ~rL-n~~g~kLSKRk~~~l-v~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l 577 (745)
+.| +.+|.|||||..+.. +. ==|+| .++....++-+++. +.+|+..+-. .+...++++..++.
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i~-----l~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~------~~~~~~eel~~~~~ 250 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWDP-----VLDSP--YDVYQKIRNAFDPD-VLEFLKLFTF------LDYEEIEELEEEHA 250 (269)
T ss_pred ccccCCCCCcccCCCCCccccc-----CCCCH--HHHHHHHHcCCcHH-HHHHHHHHHc------CCHHHHHHHHHHHh
Confidence 665 789999999987643 11 11333 35666666667774 3555543322 22444566655554
No 79
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0011 Score=75.64 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCcceeecCchhccchhHHHHHHHH----hCCCCCcEEeeecccCC-CccccccccccccccCccCCCCCCCcccHHHHH
Q 004546 465 ENITHSLCTLEFETRRASYFWLLHA----LGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (745)
Q Consensus 465 ~gITHvlRg~E~~~~~~~q~~L~~a----Lg~~~P~~~ef~rLn~~-g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lr 539 (745)
.|||-=--|+||..+..+|+-.+.. +|+..|...-|-...+. +.+||+|+|+ ..|+++..
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHH
Confidence 4555555799999999999887764 57777765556554444 4999999998 36899988
Q ss_pred HcCCCHHHHHHHHHhcCccC
Q 004546 540 RRGVTSTSINAFVQGIGISR 559 (745)
Q Consensus 540 rrG~~PeAI~~fl~~lG~s~ 559 (745)
+- ++||.++.|+..--.++
T Consensus 293 ev-~~pE~lry~~~r~kP~r 311 (521)
T COG1384 293 EV-APPEVLRYLIARTKPNR 311 (521)
T ss_pred Hh-cCHhHeeeeeeecCCCc
Confidence 75 78888887776543433
No 80
>PLN02563 aminoacyl-tRNA ligase
Probab=97.56 E-value=0.00019 Score=88.43 Aligned_cols=94 Identities=22% Similarity=0.334 Sum_probs=71.0
Q ss_pred EEEEeCCCCCCc-CchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc----------------ccchHHHHHHHHHHHHH
Q 004546 275 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 335 (745)
Q Consensus 275 V~tRFaPsPtG~-LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp----------------~re~~e~~~~I~edL~w 335 (745)
+++=-+|.|||. |||||+++.++.+.+|| +..|.-+|.+-.+|. .....++++.+.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 566667999996 99999999999999998 456777777766661 22346888999999999
Q ss_pred cCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 336 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 336 LGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
||+ +|+..+.+++ |....+....+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 995 5666555544 43334455568999999996
No 81
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=97.54 E-value=0.00017 Score=87.63 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=67.2
Q ss_pred EEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC-----------------cc------------cch
Q 004546 275 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN-----------------PE------------AEK 322 (745)
Q Consensus 275 V~tRF-aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD-----------------p~------------re~ 322 (745)
.+.=. +|.|||.||||||++.++.+.+|| +..|.-++..-.+| +. .-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 33444 899999999999999999999998 45676666654444 22 123
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 323 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 323 ~e~~~~I~edL~wLGi~--pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
.++.+.|.++++.||+. |+..+++++ |.........+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 46789999999999985 545554443 33333344568999999886
No 82
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.52 E-value=0.00019 Score=87.76 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=69.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-----------------------c----------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-----------------------E---------- 319 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-----------------------~---------- 319 (745)
+++=-||.|||.||||||++.++-+.+|| ...|.-++..-..|. .
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 55666999999999999999999999998 456766665544441 0
Q ss_pred cchHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCcccCC
Q 004546 320 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVDH 370 (745)
Q Consensus 320 re~~e~~~~I~edL~wLGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~C~ 370 (745)
.-..++++.+.++++.||+ +|+..+.+.+ |-........+|.++|++|...
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~ 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecc
Confidence 1123578888999999999 6887766655 2222223345899999999743
No 83
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.46 E-value=0.00025 Score=88.05 Aligned_cols=95 Identities=26% Similarity=0.283 Sum_probs=71.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c-----------------------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A----------------------- 320 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r----------------------- 320 (745)
+++==||.|||.||||||++.++-+.+|| +..|.-++.+-.+|.. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 44555899999999999999999999998 5678777877777721 0
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCcccC
Q 004546 321 -EKKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYVD 369 (745)
Q Consensus 321 -e~~e~~~~I~edL~wLGi~--pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~C 369 (745)
-..+|.+.|.+.++.||+. |+..+++. +|....+....+|.++|+.|..
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 196 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRD 196 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 0257788899999999964 65655444 3444555666799999999873
No 84
>PLN02943 aminoacyl-tRNA ligase
Probab=97.46 E-value=0.0003 Score=86.98 Aligned_cols=94 Identities=24% Similarity=0.329 Sum_probs=70.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc-----------------------cc--------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE-----------------------AE-------- 321 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~-----------------------re-------- 321 (745)
+++=-||.|||.||||||++..+-+.+|| +..|.-++.+-.+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 55556899999999999999999999998 5678888877777721 01
Q ss_pred -hHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 322 -KKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 322 -~~e~~~~I~edL~wLGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
..+|...|.+.++.||+ +|+..+++.| |.........+|.++|+.|.
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 13667899999999998 5766665554 33333344568999999887
No 85
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.0013 Score=72.36 Aligned_cols=179 Identities=17% Similarity=0.119 Sum_probs=101.2
Q ss_pred CCCCcCchhHHHHHHHHHHHH-HHcCCEEEEEeecCC-------cccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLA-KERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~A-r~~~G~~iLRidDTD-------p~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~ 351 (745)
.|||.+||||.-.++-+|..- ..++.++++=|-|.- |+ +..++...+..++-.+|++|++ +.+||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 578999999999999998655 456666555555542 22 2234444556677789999985 789999744
Q ss_pred HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCce
Q 004546 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (745)
Q Consensus 352 ~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~ 431 (745)
..+.+-. ..|.++-.++... ..| .+....-..+ |. .. .+.
T Consensus 90 -~~eL~~i-------l~~~t~~g~L~R~--~~~---------K~k~~~~~~~--~~--------------~~-----~~~ 129 (332)
T PRK12556 90 -IFELAWI-------LSCLTPKGLMNRA--HAY---------KAKVDQNKEA--GL--------------DL-----DAG 129 (332)
T ss_pred -HHHHHHH-------HHccchHHHHHhc--cHH---------HHHHhhhhhh--cc--------------cc-----CCC
Confidence 3344332 3566665555422 111 0000000000 00 00 000
Q ss_pred EEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhC------CCCCcEE---eeec
Q 004546 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVW---EYSR 502 (745)
Q Consensus 432 Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg------~~~P~~~---ef~r 502 (745)
..--...||.-+=|..+ +.+.+||.-|.|-..+-..-.-+.+.++ +..|... +..+
T Consensus 130 ------------~~~gll~YPvLqAADIl---~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~ 194 (332)
T PRK12556 130 ------------VNMGLYTYPILMAADIL---LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAI 194 (332)
T ss_pred ------------CcchhhhchHHHhhhhh---hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceecccccccc
Confidence 00012247777666554 5678999999887666555555555555 4456433 2223
Q ss_pred c-cCCCccccccccc
Q 004546 503 L-NVSNTVMSKRKLN 516 (745)
Q Consensus 503 L-n~~g~kLSKRk~~ 516 (745)
+ .++|.|||||..+
T Consensus 195 l~gLdg~KMSKS~~n 209 (332)
T PRK12556 195 LPGLDGRKMSKSYGN 209 (332)
T ss_pred ccCCCCCCCCCCCCC
Confidence 3 5778999999864
No 86
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.45 E-value=0.0013 Score=72.21 Aligned_cols=189 Identities=19% Similarity=0.241 Sum_probs=112.3
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC-----c--ccchHHHHHHHHHH
Q 004546 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-----P--EAEKKEYIDHIEEI 332 (745)
Q Consensus 260 t~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD-----p--~re~~e~~~~I~ed 332 (745)
|.+-|+++++. +.+.+.=..=.|||.+||||.- ++.++..-...|..+++=|-|.- + ..........+..+
T Consensus 17 ~~~el~~~l~~-~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~ 94 (329)
T PRK08560 17 TEEELRELLES-KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94 (329)
T ss_pred CHHHHHHHHhC-CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHH
Confidence 35666677753 3333333455678999999976 45666666666777777676652 1 12334555667888
Q ss_pred HHHcCCCCCC--cCCCchhHHH--HHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcc
Q 004546 333 VQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 408 (745)
Q Consensus 333 L~wLGi~pd~--i~~qSd~~~~--~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~ 408 (745)
+..+|++|++ +..||+.... |+..+..| .|.++-.++..... . .|+
T Consensus 95 ~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~---------------------~-~~~- 144 (329)
T PRK08560 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMT---------------------I-MGR- 144 (329)
T ss_pred HHHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhh---------------------h-hcc-
Confidence 8899999975 6788886432 22332222 45555555442110 0 000
Q ss_pred cCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHH
Q 004546 409 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (745)
Q Consensus 409 ~~g~~vlR~K~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~ 488 (745)
...+.+ .| ...||.-+-|..+ +.+.+++..|.|-..+-..-.-+.+
T Consensus 145 -----------~~~~~~------------------~g--~l~YP~lqaaDil---~~~ad~vpvG~DQ~~h~~l~Rdia~ 190 (329)
T PRK08560 145 -----------RMEEPD------------------VS--KLVYPLMQVADIF---YLDVDIAVGGMDQRKIHMLAREVLP 190 (329)
T ss_pred -----------cCCCCC------------------HH--HHHHHHHHHHHHH---HhCCCEEEechhHHHHHHHHHHhhH
Confidence 000000 00 1236665555544 5678899999887666665566677
Q ss_pred HhCCCCCcEEeeecc-cCCCc--cccccc
Q 004546 489 ALGLYQPYVWEYSRL-NVSNT--VMSKRK 514 (745)
Q Consensus 489 aLg~~~P~~~ef~rL-n~~g~--kLSKRk 514 (745)
.++...|.....++| +++|. |||||.
T Consensus 191 ~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 191 KLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred hcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 888888876665554 67776 999998
No 87
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.42 E-value=0.0003 Score=86.35 Aligned_cols=89 Identities=27% Similarity=0.338 Sum_probs=67.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c---------c--------------hHHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A---------E--------------KKEY 325 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r---------e--------------~~e~ 325 (745)
||.+||.||||||.+.++-+.+|| +..|.-+|..-.||.. + . ..+|
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998 4668878877777731 0 0 3567
Q ss_pred HHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 326 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 326 ~~~I~edL~wLGi~--pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
...|.+.++.||+. |+..+++.| |-........+|.++|+.|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 89999999999965 666555544 33333345568999999886
No 88
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0037 Score=71.35 Aligned_cols=162 Identities=23% Similarity=0.340 Sum_probs=121.9
Q ss_pred HHHH-HhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCC-------CccCChHHHHHHHhc
Q 004546 13 LELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLYIVS 84 (745)
Q Consensus 13 ~~lf-~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~-------~~~~~~~~~~~~I~~ 84 (745)
.+.| ...|||++-|.++++.+.+ .-+.++.+. ++. +.-....|++....+.. -...|...+.+.+.+
T Consensus 460 ~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~---p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~ 534 (631)
T COG2511 460 VERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD---PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSE 534 (631)
T ss_pred HHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC---HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhc
Confidence 3334 5579999999999998654 445555443 442 22233444444333322 235678889999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhh-C
Q 004546 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR-L 163 (745)
Q Consensus 85 ~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~-L 163 (745)
|+|.- .|+..++++|.++| .-|.++.-+..|.. ..++|||+..|++++++|.+.+.+.+-.. +|.||+.+=+. =
T Consensus 535 g~iak-e~iee~l~~l~~~p--~~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~a-~g~lmg~~M~~~r 609 (631)
T COG2511 535 GKIAK-EAIEEILKALAENP--GKDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMGA-MGLLMGRVMAKLR 609 (631)
T ss_pred ccchH-HHHHHHHHHHHhCC--CCCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchhh-HHHHHHHHHHHhh
Confidence 99985 89999999999875 56888888888864 59999999999999999999888877776 88998884333 3
Q ss_pred CCCChhhHHHHHHHHHHHhcC
Q 004546 164 PWADPKIVKQLIDARMYELLG 184 (745)
Q Consensus 164 kwAd~~~vk~~vd~~~~~llG 184 (745)
-=|||+.+.+.+.+.+.+.+|
T Consensus 610 g~aDgk~v~e~lr~~i~e~~~ 630 (631)
T COG2511 610 GRADGKLVSEILREKLQEILG 630 (631)
T ss_pred ccCCcHHHHHHHHHHHHHhhc
Confidence 469999999999999888776
No 89
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00012 Score=88.21 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEEeecC-------------CcccchHHHHHHHHHHHHHc
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~---~iLRidDT-------------Dp~re~~e~~~~I~edL~wL 336 (745)
.++=-=|.|||.||+||+|++.+.+.+||. ..|. +=+=+|-+ ||..-...+++.+.++|+.|
T Consensus 37 yvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~l 116 (814)
T COG0495 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSL 116 (814)
T ss_pred EEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 455556899999999999999999999983 3443 33344433 56667789999999999999
Q ss_pred CCC--CCCcCCCchhHHHHHHH----HHHHHHcCCccc
Q 004546 337 GWE--PFKITYTSDYFQELYEL----AVELIRRGHAYV 368 (745)
Q Consensus 337 Gi~--pd~i~~qSd~~~~~ye~----A~~LI~~G~AY~ 368 (745)
|+. |+....++|= .||.+ ..+|.++|++|.
T Consensus 117 G~siDW~Ref~T~Dp--~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 117 GFSIDWRREFATCDP--EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CCccccccceecCCc--cHHHHHHHHHHHHHHCCCEEe
Confidence 976 5544333431 25544 358999999996
No 90
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.35 E-value=0.00039 Score=85.71 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=68.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC----------------------ccc-------chH
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------------PEA-------EKK 323 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD----------------------p~r-------e~~ 323 (745)
+++==||.+||.||||||++.++-+.++| ...|.-++.+-.+| ++. -..
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 44445899999999999999999999998 45566665544443 221 234
Q ss_pred HHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 324 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 324 e~~~~I~edL~wLGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567889999999999 7887666554 33334455568999999887
No 91
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.34 E-value=0.00041 Score=85.95 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCC-----------------------cccc-------h
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN-----------------------PEAE-------K 322 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTD-----------------------p~re-------~ 322 (745)
+++==||.+||.||||||.+.++-+.++| ...|.-++.+-.+| |+.. .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 34444899999999999999999999998 34565555444443 2111 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 323 KEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 323 ~e~~~~I~edL~wLGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
.++.+.+.++++.||+ +|+..+++.+ |-........+|.++|+.|.
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567788999999999 7888766654 22233344568999999886
No 92
>PLN02486 aminoacyl-tRNA ligase
Probab=97.29 E-value=0.01 Score=66.65 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc---ccchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 004546 280 PPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 349 (745)
Q Consensus 280 aPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp---~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~ 349 (745)
.=.||| .|||||+-.+++.-.+-+..|..+++-|.|- .. -.+..++......++..+|++|++ ++.++++
T Consensus 79 G~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~ 158 (383)
T PLN02486 79 GRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDY 158 (383)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHH
Confidence 446788 5999999998876666666677777777761 11 112334445567777789999975 5666776
Q ss_pred HH-HHHHHHHH
Q 004546 350 FQ-ELYELAVE 359 (745)
Q Consensus 350 ~~-~~ye~A~~ 359 (745)
.. .+|..+.+
T Consensus 159 ~~~~~~~~~~~ 169 (383)
T PLN02486 159 VGGAFYKNMVK 169 (383)
T ss_pred HhHhHHHHHHH
Confidence 63 35554443
No 93
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.00042 Score=86.50 Aligned_cols=94 Identities=24% Similarity=0.289 Sum_probs=69.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c-----------------------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A----------------------- 320 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r----------------------- 320 (745)
+++==||+|||.|||||+++.++-+.+|| +..|.-++.+-.+|.. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 44445899999999999999999999998 4567777777777621 1
Q ss_pred -chHHHHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 321 -EKKEYIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 321 -e~~e~~~~I~edL~wLGi~--pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
-..++.+.|.++++.||+. |+..+++. +|.........+|.++|..|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0246678899999999964 66655443 344444455678999999987
No 94
>PLN02381 valyl-tRNA synthetase
Probab=97.24 E-value=0.00066 Score=84.83 Aligned_cols=95 Identities=27% Similarity=0.353 Sum_probs=69.6
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c-----------------------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A----------------------- 320 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r----------------------- 320 (745)
+++==||.+||.||||||++..+-+.+|| +..|.-++..-.+|.. +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 44555999999999999999999999998 4567777777666621 0
Q ss_pred -chHHHHHHHHHHHHHcCC--CCCCcCCCch--hHHHHHHHHHHHHHcCCcccC
Q 004546 321 -EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (745)
Q Consensus 321 -e~~e~~~~I~edL~wLGi--~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~C 369 (745)
-..+|...|.+.++.||+ +|+..+++.| |.........+|.++|+.|..
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024667888999999995 5667666655 333333445689999999874
No 95
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.23 E-value=0.0011 Score=72.99 Aligned_cols=180 Identities=19% Similarity=0.145 Sum_probs=99.2
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC---C---cccchHHHHHHHHHHHHHcCCCCCC--cCCC
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT---N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYT 346 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT---D---p~re~~e~~~~I~edL~wLGi~pd~--i~~q 346 (745)
|.+=|. |||.+||||.-.++.++..-+..+..+++--|+. + ...+..++...+..++-.+|++|++ ++.|
T Consensus 5 v~sG~~--PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~q 82 (333)
T PRK12282 5 ILTGDR--PTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQ 82 (333)
T ss_pred EEEeeC--CCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEEC
Confidence 444454 5799999999999999966665555555433332 1 1122334555566677789999985 6789
Q ss_pred chhHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCC
Q 004546 347 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 426 (745)
Q Consensus 347 Sd~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~ 426 (745)
|+..+ +.+++. .+.|.++-.++.. ..+ |++... .. ++ + .+.
T Consensus 83 S~~~e-~~~l~~-------~l~~~~~~~~l~r-----------~~~-------~k~~~~-~~-------~~--~---~~~ 123 (333)
T PRK12282 83 SQIPE-LAELTM-------YYMNLVTVARLER-----------NPT-------VKTEIA-QK-------GF--G---RSI 123 (333)
T ss_pred CcchH-HHHHHH-------HHHhhchHHHHhh-----------chH-------HHHHHh-cc-------CC--C---CCC
Confidence 99744 333322 2566666555431 111 111100 00 00 0 000
Q ss_pred CCCceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCC--CCCcEE------
Q 004546 427 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL--YQPYVW------ 498 (745)
Q Consensus 427 ~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~--~~P~~~------ 498 (745)
+ .| ...||.-+=|..+ +.+.++|..|.|-..+-..-.-+...++. ..|...
T Consensus 124 ~----------------~g--~l~YP~lqaaDIl---~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~ 182 (333)
T PRK12282 124 P----------------AG--FLTYPVSQAADIT---AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALL 182 (333)
T ss_pred c----------------ch--hhcchHHHHHHHH---hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcc
Confidence 0 01 1236766655543 56889999998876555555556666662 223322
Q ss_pred -eeecc-cCCC-ccccccccc
Q 004546 499 -EYSRL-NVSN-TVMSKRKLN 516 (745)
Q Consensus 499 -ef~rL-n~~g-~kLSKRk~~ 516 (745)
+.+++ +++| .|||||..+
T Consensus 183 ~~~~~i~~L~g~~KMSKS~~~ 203 (333)
T PRK12282 183 PEAGRLPGLDGKAKMSKSLGN 203 (333)
T ss_pred cCCCcccCCCCCCcCCCCCCC
Confidence 12232 5566 799999864
No 96
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.20 E-value=0.00074 Score=83.85 Aligned_cols=95 Identities=23% Similarity=0.287 Sum_probs=69.1
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCc-----------------c----------------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-----------------E---------------- 319 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp-----------------~---------------- 319 (745)
+++==||.|||.||+|||++..+-+.+|| ...|.-+++.=..|. .
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 33444899999999999999999999998 466777777655551 0
Q ss_pred cchHHHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCcccC
Q 004546 320 AEKKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (745)
Q Consensus 320 re~~e~~~~I~edL~wLG--i~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~C 369 (745)
.-..+|.+.+.+.++.|| ++|+..+.+.| |.+.......+|.++|+.|..
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~ 177 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKG 177 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 123467888999999999 56877766665 323333334589999999873
No 97
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.19 E-value=0.00093 Score=78.83 Aligned_cols=92 Identities=25% Similarity=0.287 Sum_probs=61.4
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------------------------------cc
Q 004546 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------------------------------AE 321 (745)
Q Consensus 277 tRFaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------------------------------re 321 (745)
+==||.+||.||+|||++..+-+.+|| ...|..++..=-.|-. .-
T Consensus 28 ~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (601)
T PF00133_consen 28 HDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREW 107 (601)
T ss_dssp EE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHH
T ss_pred EeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcch
Confidence 334899999999999999999999998 4567655554433310 01
Q ss_pred hHHHHHHHHHHHHHcCC--CCCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 322 KKEYIDHIEEIVQWMGW--EPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 322 ~~e~~~~I~edL~wLGi--~pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
..++.+.+.++++.||+ +|+..+++. +|-........+|.++|..|.
T Consensus 108 ~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 108 AEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 34677888999999997 566654443 343344455679999999996
No 98
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.16 E-value=0.00084 Score=84.58 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=69.4
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc---------c------------------------chH
Q 004546 279 FPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE---------A------------------------EKK 323 (745)
Q Consensus 279 FaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~---------r------------------------e~~ 323 (745)
=||.+||.||||||.+.++-+.++| ...|.-+++.-.+|.. + -..
T Consensus 109 gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~ 188 (1205)
T PTZ00427 109 GPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVL 188 (1205)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHH
Confidence 3899999999999999999999998 4678888888777620 0 123
Q ss_pred HHHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 324 EYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 324 e~~~~I~edL~wLG--i~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
+|.+.+.+.++.|| ++|+..+++.+ |.........+|.++|+.|.
T Consensus 189 ~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 189 KYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 66788899999999 78888766665 43344445568999999886
No 99
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.15 E-value=0.00063 Score=84.09 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=45.4
Q ss_pred EEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHH
Q 004546 497 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 497 ~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~i 573 (745)
...+|++..+|.|||||+|| ..++..+.++ |.+.++|.||+..|-...+..++.+.+.+..
T Consensus 608 i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~ 668 (938)
T TIGR00395 608 IVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTI 668 (938)
T ss_pred EEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 34567887889999999988 3567777766 8899999999887765566667776666554
No 100
>PLN02882 aminoacyl-tRNA ligase
Probab=97.06 E-value=0.0013 Score=82.94 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc----------------c-----------------chHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE----------------A-----------------EKKE 324 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~----------------r-----------------e~~e 324 (745)
||.+||.+|||||++.++-+.+|| ...|.-+++.-.+|-. + ...+
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 899999999999999999999998 4567777777666520 0 1246
Q ss_pred HHHHHHHHHHHcC--CCCCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 325 YIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 325 ~~~~I~edL~wLG--i~pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
|.+.+.+.++.|| ++|+..|++.+ |.........+|.++|..|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7788899999999 77888766654 33333444568999999886
No 101
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.06 E-value=0.015 Score=68.79 Aligned_cols=157 Identities=20% Similarity=0.288 Sum_probs=115.5
Q ss_pred HHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCC-------ccCChHHHHHHHhc
Q 004546 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLYIVS 84 (745)
Q Consensus 13 ~~lf~-~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~~-------~~~~~~~~~~~I~~ 84 (745)
.+.|. ..||++.-|.-++.+. ...-+++++...+. -++.+.+.|.+....++.. ...|...|+..|.+
T Consensus 452 ~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~---~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 527 (620)
T TIGR00134 452 KERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV---DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKLLEV 527 (620)
T ss_pred HHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHHHHc
Confidence 44454 6899999999888886 56667666655432 2455666655544333321 13578889999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCC
Q 004546 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP 164 (745)
Q Consensus 85 ~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~Lk 164 (745)
|+|.. .+....++.+..++ -+.++.-+..|... +|.++|++.|+++|++|.+.+.+.+-+ .+|.+||++.+.++
T Consensus 528 g~is~-~~~k~vl~~~~~~~---~~~~~iiee~gL~q-lsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVMk~tk 601 (620)
T TIGR00134 528 GKIAK-EGLREILKCMCDEP---LAAEDAARKLKLKL-LAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAMGRLR 601 (620)
T ss_pred CCCcH-HHHHHHHHHHHhCC---CCHHHHHHHcCCcC-CCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHHHHhc
Confidence 99975 77788888776554 25677899999654 899999999999999998877775533 48889998877654
Q ss_pred C-CChhhHHHHHHHHH
Q 004546 165 W-ADPKIVKQLIDARM 179 (745)
Q Consensus 165 w-Ad~~~vk~~vd~~~ 179 (745)
= |||+.|.+.|.+.+
T Consensus 602 GkAdp~~V~~lLke~L 617 (620)
T TIGR00134 602 GKADGKVVNRILRKKL 617 (620)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3 99999999887665
No 102
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.03 E-value=0.006 Score=65.42 Aligned_cols=174 Identities=15% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Cc-----------ccchHHHHHHHHHHHHHcCCC--CCC
Q 004546 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 342 (745)
Q Consensus 282 sPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp-----------~re~~e~~~~I~edL~wLGi~--pd~ 342 (745)
.||| .|||||.-. +.++..-+..|..+++=|-|- || ..+..+....|..++..+|++ |++
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999988 566655555555544433321 33 122345566788889999998 764
Q ss_pred --cCCCchhHH--HHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEE
Q 004546 343 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (745)
Q Consensus 343 --i~~qSd~~~--~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K 418 (745)
+..||+.+. .+++.+..| -|+.+-.+|...- + |.+ |++
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~-----------~-------~k~-------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKT-----------S-------FQS-------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhCh-----------H-------HHH-------------Hhc
Confidence 788998864 355555443 3455555554221 0 000 000
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCccccccccccccccc-cccCCcceeecCchhccchhHHHHHHHHhC-CCCCc
Q 004546 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV-DSIENITHSLCTLEFETRRASYFWLLHALG-LYQPY 496 (745)
Q Consensus 419 ~d~~~~n~~~~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VD-D~l~gITHvlRg~E~~~~~~~q~~L~~aLg-~~~P~ 496 (745)
...++. - -.||.-+=+..+- ..-.+.++++-|.|-..|-..-.-+...++ ...|.
T Consensus 128 -----~~~~~~-----~-------------~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~ 184 (273)
T cd00395 128 -----EGISAT-----E-------------FTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAE 184 (273)
T ss_pred -----CCCCch-----h-------------hhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 000000 0 0133322222110 011456888889876666555555666674 56787
Q ss_pred EEeeecc-cCCCcccccccccc
Q 004546 497 VWEYSRL-NVSNTVMSKRKLNF 517 (745)
Q Consensus 497 ~~ef~rL-n~~g~kLSKRk~~~ 517 (745)
....++| ..+|.||||+.++.
T Consensus 185 ~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 185 GLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred EEeeccccCCCCCcCCCCCCCC
Confidence 6666664 78999999998764
No 103
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0022 Score=77.70 Aligned_cols=90 Identities=29% Similarity=0.331 Sum_probs=68.7
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc-----------------------cc---------hHH
Q 004546 279 FPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE-----------------------AE---------KKE 324 (745)
Q Consensus 279 FaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~-----------------------re---------~~e 324 (745)
=||++||-||||||....+-+.++| +..|.-+|=+-.||.+ |+ +++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 3799999999999999999899998 4567777766666631 11 457
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCc--hhHHHHHHHHHHHHHcCCccc
Q 004546 325 YIDHIEEIVQWMGWE--PFKITYTS--DYFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 325 ~~~~I~edL~wLGi~--pd~i~~qS--d~~~~~ye~A~~LI~~G~AY~ 368 (745)
+...|.+.++.||+. |+..+++- .+.....+...+|.++|..|.
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 889999999999986 55554443 344455566779999999997
No 104
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.93 E-value=0.0022 Score=68.86 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=102.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHHHH--HHHcCCCCCC--cCCCch
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPFK--ITYTSD 348 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~----re~~e~~~~I~ed--L~wLGi~pd~--i~~qSd 348 (745)
.|||.|||||.-++ .++..-...|..++.=+-|. |+. +........+.++ +-.+|++|++ +..||+
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 57888999998876 45555555888888877665 333 3334444555555 6789999974 788998
Q ss_pred hHHHHHHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCC
Q 004546 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (745)
Q Consensus 349 ~~~~~ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~ 428 (745)
+.... ++...|...+. .-++.... .++.+.. .+..+ ++.++
T Consensus 92 ~~~~~-~~~~~l~~~~~-------~~~l~~~~------------------~~~~~~~-~~~~~------------~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVAR-------LFSLNRML------------------RFKDVKK-RLKNG------------EGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHB-------HHHHHHHH------------------HHHHHHH-HHSST------------TTSBH
T ss_pred ccccc-chhhhhccccc-------ccchhhhh------------------hhccccc-ccccc------------cCcce
Confidence 76544 55544433322 11222111 1111110 00000 00000
Q ss_pred CceEEEEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCCC----CCcEEeeecc-
Q 004546 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 503 (745)
Q Consensus 429 ~D~Vl~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~~----~P~~~ef~rL- 503 (745)
....||..+-+ |=...+.++++.|.|-..+-..-.-+.+.++.. .|....+..|
T Consensus 133 ------------------~~~~Yp~lQaa---D~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 ------------------GEFSYPLLQAA---DILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp ------------------HHHHHHHHHHH---HHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ------------------eeEEccccccc---ceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 01246665533 333566779999998777766666677788876 8877766665
Q ss_pred cCCCc-cccccccc
Q 004546 504 NVSNT-VMSKRKLN 516 (745)
Q Consensus 504 n~~g~-kLSKRk~~ 516 (745)
..+|+ |||||..+
T Consensus 192 ~l~G~~KMSKS~~n 205 (292)
T PF00579_consen 192 GLDGQKKMSKSDPN 205 (292)
T ss_dssp STTSSSBTTTTTTG
T ss_pred ccCCccccCccCCc
Confidence 67888 99999988
No 105
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.92 E-value=0.0019 Score=80.05 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=65.8
Q ss_pred EEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEeecCC-------------------------ccc-------
Q 004546 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 320 (745)
Q Consensus 275 V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRidDTD-------------------------p~r------- 320 (745)
+++==||.+||.||||||++.++-+.++|. ..|.-++.+=..| ++.
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 444459999999999999999999999983 4565555444333 110
Q ss_pred chHHHHHHHHHHHHHcCCC--CCCcCCCch--hHHHHHHHHHHHHHcCCccc
Q 004546 321 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (745)
Q Consensus 321 e~~e~~~~I~edL~wLGi~--pd~i~~qSd--~~~~~ye~A~~LI~~G~AY~ 368 (745)
-..++++.+.++++.||+- |+..+.+.+ |.........+|.++|+.|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1235677889999999985 777666554 33333344568999999886
No 106
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=96.88 E-value=0.023 Score=67.34 Aligned_cols=163 Identities=20% Similarity=0.277 Sum_probs=118.3
Q ss_pred HHHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHHHHhhCCCC-------ccCChHHHHHHHh
Q 004546 12 ILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLYIV 83 (745)
Q Consensus 12 ~~~lf~-~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~la~~~~~~-------~~~~~~~~~~~I~ 83 (745)
..+.|. ..||++.-|.-++.++. ..-+.+++.. . .-++...+.|.+....+... ...+...|+..|.
T Consensus 458 ~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~---~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~~~~ 532 (630)
T PRK04028 458 KVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G---VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFKLVS 532 (630)
T ss_pred HHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C---CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHHHH
Confidence 455554 58999999988777765 6666666543 2 12466677777665433322 2356788899999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhC
Q 004546 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 163 (745)
Q Consensus 84 ~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~L 163 (745)
+|+|.. .+....++-+-+.+ .-+.++.-++.|.. .+|.++|++.|+++|++|.+.+.+.+ .-.+|.+||++.+..
T Consensus 533 ~~~is~-~~ak~v~~~~~~~~--~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk~t 607 (630)
T PRK04028 533 EGKIAK-EAIEEILKELAENP--GKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMAEL 607 (630)
T ss_pred cCCccH-HHHHHHHHHHHhcC--CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHHHh
Confidence 999986 56677777554432 46788999999976 57999999999999999977665533 345889999887764
Q ss_pred C-CCChhhHHHHHHHHHHHhcC
Q 004546 164 P-WADPKIVKQLIDARMYELLG 184 (745)
Q Consensus 164 k-wAd~~~vk~~vd~~~~~llG 184 (745)
+ =|||+.|.+.|.+.+.+.+|
T Consensus 608 kGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 608 RGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 4 49999999999988776654
No 107
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=96.87 E-value=0.021 Score=64.10 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=52.0
Q ss_pred cHHHHHHhhhhcCCeEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc----cchHHHHHHHH
Q 004546 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIE 330 (745)
Q Consensus 260 t~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~----re~~e~~~~I~ 330 (745)
|.+-|++.++. +...+.=..=.|||.+||||.-.-.+++.--...|..+++=|-|. |+. .........+.
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~ 131 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFI 131 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHH
Confidence 35555555643 233333334467899999993111122222234466666666554 221 12234445566
Q ss_pred HHHHHcCCCCCC--cCCCchhHHH
Q 004546 331 EIVQWMGWEPFK--ITYTSDYFQE 352 (745)
Q Consensus 331 edL~wLGi~pd~--i~~qSd~~~~ 352 (745)
..+..+|++|++ +.+||+++.+
T Consensus 132 ~~~~A~GlDp~k~~i~~qS~~v~~ 155 (383)
T PTZ00126 132 EVWKAAGMDMDNVRFLWASEEINK 155 (383)
T ss_pred HHHHHhCCCccceEEEECChhhhh
Confidence 778899999984 7789987643
No 108
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.72 E-value=0.059 Score=61.16 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=49.5
Q ss_pred CcceeecCchhccchhHHHHHHHHhCCCCCcEEeeecc-cCCCccccccccccccccCccCCCCCCC---cccHHHHHHc
Q 004546 466 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 541 (745)
Q Consensus 466 gITHvlRg~E~~~~~~~q~~L~~aLg~~~P~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPR---l~TL~~lrrr 541 (745)
+++.++-|.|-..|-..=.-|.+.++...|.....+.| +.+|+||||+.++.. |=|+. ...+....++
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI--------~L~d~~tsp~~i~qki~~ 257 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAI--------WLDPEKTSPYEFYQFWMN 257 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCce--------eccCCCCCHHHHHHHHHc
Confidence 67777778776555554455667778777755555554 788999999987521 33333 2344444432
Q ss_pred CCCHHHHHHHHHhc
Q 004546 542 GVTSTSINAFVQGI 555 (745)
Q Consensus 542 G~~PeAI~~fl~~l 555 (745)
.+...+..|+..+
T Consensus 258 -~~D~~v~~~l~~~ 270 (410)
T PRK13354 258 -IDDRDVVKYLKLF 270 (410)
T ss_pred -CChHHHHHHHHHH
Confidence 5666666665544
No 109
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=96.65 E-value=0.049 Score=62.74 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=112.9
Q ss_pred HHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHHH-HHhhCCC---------CccCChHHHHHH
Q 004546 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTLLLY 81 (745)
Q Consensus 13 ~~lf~-~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly~-la~~~~~---------~~~~~~~~~~~~ 81 (745)
.+.|. ..||++.-|.-++.++.++.-+.+++.. +. .++...+.|.+ +...++. -...+...|+..
T Consensus 302 ~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~---~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~Li~l 377 (474)
T PRK05477 302 RARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA---DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAELIKL 377 (474)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHH
Confidence 45565 5899999999999999999989887654 22 23555555444 4333321 123578889999
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHH
Q 004546 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHV 159 (745)
Q Consensus 82 I~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~r--y~~n~g~l~~~~ 159 (745)
|.+|+|.+ .+....+.-+... .-+.++.-++.|.+.+-.+++|++.|+++|++|.+.+.+-| -.-.+|-|||++
T Consensus 378 v~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG~v 453 (474)
T PRK05477 378 IDDGTISG-KIAKEVFEEMLET---GGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQV 453 (474)
T ss_pred HHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHH
Confidence 99999987 5667777755543 36789999999987644445999999999999999887642 122367788877
Q ss_pred Hhh-CCCCChhhHHHHHHHH
Q 004546 160 RKR-LPWADPKIVKQLIDAR 178 (745)
Q Consensus 160 r~~-LkwAd~~~vk~~vd~~ 178 (745)
-+. =--|||+.|.+.+.+.
T Consensus 454 Mk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 454 MKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHhcCCCCHHHHHHHHHHh
Confidence 443 4569999999888653
No 110
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.65 E-value=0.0038 Score=68.76 Aligned_cols=171 Identities=19% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Cc--ccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHHHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 353 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp--~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~~~ 353 (745)
.|||.+||||.-.++-+|..-... ..+++=|-|. ++ ..+..++...+..++-.+|++|++ +.+||+..+ .
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 578999999999777776433332 3444445532 22 122334455566777789999975 778998543 4
Q ss_pred HHHHHHHHHcCCcccCCCCHHHHHHhhhccCCCCCCCCCHHHhhHHHHHHhcCcccCCCeEEEEEecCCCCCCCCCceEE
Q 004546 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (745)
Q Consensus 354 ye~A~~LI~~G~AY~C~cs~eel~~~R~~~~~~~~R~~s~ee~l~~fe~M~~G~~~~g~~vlR~K~d~~~~n~~~~D~Vl 433 (745)
.+++-.| .|..+--+++.. . + |.+.. + +. ..+.+ +
T Consensus 87 ~el~~~l-------~~~~~~~~l~r~--~---------~-------~k~~~-~---------~~-----~~~~~-----~ 121 (333)
T PRK00927 87 AELAWIL-------NCITPLGELERM--T---------Q-------FKDKS-A---------KQ-----KENVS-----A 121 (333)
T ss_pred HHHHHHH-------HhhhhHHHHHhh--h---------h-------HHHHH-h---------cc-----CCCCC-----c
Confidence 4444332 344443333321 0 0 11000 0 00 00000 0
Q ss_pred EEEecCCCCCCCCccccccccccccccccccCCcceeecCchhccchhHHHHHHHHhCC------CCCcEEe--e-ec-c
Q 004546 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL------YQPYVWE--Y-SR-L 503 (745)
Q Consensus 434 ~Ri~~~~h~~~gd~w~iyPTY~fA~~VDD~l~gITHvlRg~E~~~~~~~q~~L~~aLg~------~~P~~~e--f-~r-L 503 (745)
+ ...||.-+-|.++ +.+.+++..|.|-..+-..-.-+.+.++. ..|.... + ++ .
T Consensus 122 g-------------~~~YP~lQaaDil---~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~ 185 (333)
T PRK00927 122 G-------------LFTYPVLMAADIL---LYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVM 185 (333)
T ss_pred H-------------hhhcHHHHHHHHH---hcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhcccccccc
Confidence 0 1237777766655 56889999998876665555556666652 3454333 2 33 3
Q ss_pred cCCCc--ccccccc
Q 004546 504 NVSNT--VMSKRKL 515 (745)
Q Consensus 504 n~~g~--kLSKRk~ 515 (745)
.++|. |||||..
T Consensus 186 gL~g~~~KMSKS~~ 199 (333)
T PRK00927 186 GLDGPTKKMSKSDP 199 (333)
T ss_pred CCCCCCCCCCCCCC
Confidence 66765 9999986
No 111
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.62 E-value=0.04 Score=66.83 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=113.4
Q ss_pred HHHHH-hcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHH-HHHHHhhCCCC-------ccCChHHHHHHHh
Q 004546 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL-LYTVATKYPTN-------ALVHRPTLLLYIV 83 (745)
Q Consensus 13 ~~lf~-~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~l-ly~la~~~~~~-------~~~~~~~~~~~I~ 83 (745)
.+.|. ..||++.-|.-++.++.++.-+++++... . -++...+. +..|...++.. ...+...|+..|.
T Consensus 600 ~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~-~---~pk~aANWl~~El~~~Lne~~i~~~~l~pe~LaeLv~lV~ 675 (771)
T PRK14703 600 FDRYLSELGLNEEDARTLARDPALAAFFEAALAAG-K---SPVQLANWVVNDLAGLLRDRELAALPFTPAALARLVALVD 675 (771)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHHHH
Confidence 44454 58999999999999999998888887642 1 23444443 33344333322 2367889999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHHHh
Q 004546 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRK 161 (745)
Q Consensus 84 ~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~r--y~~n~g~l~~~~r~ 161 (745)
+|+|.. .+....|+-+-.. .-+.++.-++.|.+.+-..++|++.|+++|++|.+.+.+-| -.--+|-|||+|-+
T Consensus 676 ~g~IS~-~~AK~VL~~m~~~---~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK 751 (771)
T PRK14703 676 AGRIST-RIAKDVLAELAAS---GGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMR 751 (771)
T ss_pred cCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999976 6667777766543 24688999999998766668999999999999999887644 11236666776644
Q ss_pred h-CCCCChhhHHHHHHHHH
Q 004546 162 R-LPWADPKIVKQLIDARM 179 (745)
Q Consensus 162 ~-LkwAd~~~vk~~vd~~~ 179 (745)
. =-=|||+.|.+.|.+.+
T Consensus 752 ~tkGKAdP~~V~elLke~L 770 (771)
T PRK14703 752 ETGGKANPQQVRELLQKKL 770 (771)
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 3 33589999998887653
No 112
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0025 Score=74.39 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=67.1
Q ss_pred CeEEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEe----------------ecCCcccchHHHHHHHHHHHH
Q 004546 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRY----------------DDTNPEAEKKEYIDHIEEIVQ 334 (745)
Q Consensus 273 g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRi----------------dDTDp~re~~e~~~~I~edL~ 334 (745)
.+++.-.=|.|+|-|||||.|.+.+++.+||. .+|.=++.- ..++|..-...-++.+.+.|.
T Consensus 58 ~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 58 KKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred CceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 35777777899999999999999999999994 345433321 133455556678889999999
Q ss_pred HcCCC--CCC-cC-CCchhHHHHHHHHHHHHHcCCcccC
Q 004546 335 WMGWE--PFK-IT-YTSDYFQELYELAVELIRRGHAYVD 369 (745)
Q Consensus 335 wLGi~--pd~-i~-~qSd~~~~~ye~A~~LI~~G~AY~C 369 (745)
.||+. ||. ++ -..||+.=-+=...+|.+.|.||.-
T Consensus 138 ~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 138 SLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred HcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 99986 554 32 2334332111224589999999973
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.53 E-value=0.11 Score=59.02 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=55.1
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEEeec----C-Ccc-c----------chH
Q 004546 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EKK 323 (745)
Q Consensus 261 ~~~~~~h~~~~~g~V~tRFaPsPtG~-LHIGhaRaal~n~~~Ar~~~G~~iLRidD----T-Dp~-r----------e~~ 323 (745)
.+-+.++++...-.+.+=| .|||. |||||+-+ +.++..-+..|...++=+-| | ||+ + +..
T Consensus 22 ~~~l~~~l~~~~~~vy~G~--dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLAKEPLRIYLGF--DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhhCCCCEEEEee--cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 5556666763222344444 57784 99999985 56666666666666666655 2 454 1 233
Q ss_pred HHHHHHHHHHHHcCCCCCC----cCCCchhHHH
Q 004546 324 EYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 352 (745)
Q Consensus 324 e~~~~I~edL~wLGi~pd~----i~~qSd~~~~ 352 (745)
.+.+.|.+.+ +.|++|++ +.++|+.++.
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 4555555555 78899875 7889987653
No 114
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=96.38 E-value=0.089 Score=61.53 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=112.0
Q ss_pred HHHHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHH-HHHHhhCCC---------CccCChHHHHHHH
Q 004546 13 LELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYPT---------NALVHRPTLLLYI 82 (745)
Q Consensus 13 ~~lf~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~ll-y~la~~~~~---------~~~~~~~~~~~~I 82 (745)
.+.|...||++.-|.-++.++.++.-+.+++.. +. -+|...|.| ..|...++. -...+...|+.+|
T Consensus 370 ~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~---~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi~li 445 (544)
T PLN02751 370 RRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA---DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASI 445 (544)
T ss_pred HHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHHHHH
Confidence 455788999999999999999998888887764 21 235554433 333222221 1235789999999
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc---cccchhhhHHHH
Q 004546 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR---YRTNVGDLFAHV 159 (745)
Q Consensus 83 ~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~r---y~~n~g~l~~~~ 159 (745)
.+|+|.... -...+.=+-. ..-+.+++-++-|....-.+++|++.|+++|++|.+.+.+-| -+. +|-|+|++
T Consensus 446 ~~g~Is~~~-AK~vl~~~~~---~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~-~g~lvGqV 520 (544)
T PLN02751 446 KDGTISGKI-GKEILPELLA---KGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKL-QGFFAGQV 520 (544)
T ss_pred HcCCccHHH-HHHHHHHHHh---CCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHH-HHHHHHHH
Confidence 999998744 4455554433 235788999999998644488999999999999999887644 232 67777777
Q ss_pred HhhCC-CCChhhHHHHHHHHH
Q 004546 160 RKRLP-WADPKIVKQLIDARM 179 (745)
Q Consensus 160 r~~Lk-wAd~~~vk~~vd~~~ 179 (745)
-+..+ =|||+.|.+.+.+.+
T Consensus 521 MK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 521 MKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 54433 589999998887654
No 115
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=96.35 E-value=0.02 Score=52.27 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=29.5
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCccc
Q 004546 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 320 (745)
Q Consensus 277 tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~r 320 (745)
..|+.++ |++|+||...+-. |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997432 3334468899999887654
No 116
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=96.16 E-value=0.13 Score=59.54 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=109.4
Q ss_pred HHHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHH-HHHhhCCC---------CccCChHHHHHHHhc
Q 004546 15 LFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYPT---------NALVHRPTLLLYIVS 84 (745)
Q Consensus 15 lf~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly-~la~~~~~---------~~~~~~~~~~~~I~~ 84 (745)
+-...||++.-|.-++.++.++.-+.+++.... -++...+.|. .+...++. -...+...|+..|.+
T Consensus 308 ~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~lv~~ 383 (478)
T TIGR00133 308 LKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIKLIKE 383 (478)
T ss_pred HHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHHHHHc
Confidence 335789999999999999999999988775421 2355555443 22222211 123578899999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhh--ccccchhhhHHHHHhh
Q 004546 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILEL--RYRTNVGDLFAHVRKR 162 (745)
Q Consensus 85 ~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~--ry~~n~g~l~~~~r~~ 162 (745)
|+|.. .+....|.-+-.. .-+.+++-+.-|.+.+-..++|++.|+++|++|.+++.+- +-.--+|-|+|++=+.
T Consensus 384 g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGqvMk~ 459 (478)
T TIGR00133 384 GKISG-KSAKQLIEEMLEN---GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKR 459 (478)
T ss_pred CCCcH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99986 5556666655443 3578899999998865455589999999999999877761 2222367777776433
Q ss_pred -CCCCChhhHHHHHHHH
Q 004546 163 -LPWADPKIVKQLIDAR 178 (745)
Q Consensus 163 -LkwAd~~~vk~~vd~~ 178 (745)
=--|||+.|.+.|...
T Consensus 460 t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 460 TRGRANPQLVNEILKEM 476 (478)
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 4469999999888654
No 117
>PLN02959 aminoacyl-tRNA ligase
Probab=95.99 E-value=0.014 Score=73.43 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=25.9
Q ss_pred eEEEEeC-CCCCCcCchhHHHHHHHHHHHHH
Q 004546 274 NVLTRFP-PEPNGYLHIGHAKAMFVDFGLAK 303 (745)
Q Consensus 274 ~V~tRFa-PsPtG~LHIGhaRaal~n~~~Ar 303 (745)
+...=|| |.+||.||||||++..+-..+||
T Consensus 46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~R 76 (1084)
T PLN02959 46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAA 76 (1084)
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 3556665 99999999999999999988888
No 118
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.039 Score=66.55 Aligned_cols=92 Identities=30% Similarity=0.386 Sum_probs=69.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEEeecCCcc------------------------cc---------hH
Q 004546 279 FPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------------AE---------KK 323 (745)
Q Consensus 279 FaPsPtG~LHIGhaRaal~n~~~Ar--~~~G~~iLRidDTDp~------------------------re---------~~ 323 (745)
=||+.||.||||||-++.+-..+|| +..|.-+|=+-.||.+ |+ .+
T Consensus 82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~ 161 (995)
T KOG0432|consen 82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE 161 (995)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence 3789999999999999999999998 4568777777777732 11 35
Q ss_pred HHHHHHHHHHHHcCC--CCCCcCCCch-hHHHH-HHHHHHHHHcCCcccCC
Q 004546 324 EYIDHIEEIVQWMGW--EPFKITYTSD-YFQEL-YELAVELIRRGHAYVDH 370 (745)
Q Consensus 324 e~~~~I~edL~wLGi--~pd~i~~qSd-~~~~~-ye~A~~LI~~G~AY~C~ 370 (745)
+|-..|.+.|+.||- +|+..+|+-| .+.+- -+...+|-++|..|...
T Consensus 162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence 777889999999996 4777666544 23333 35667999999999854
No 119
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.18 E-value=0.048 Score=67.87 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 004546 546 TSINAFVQ 553 (745)
Q Consensus 546 eAI~~fl~ 553 (745)
.-+.||+.
T Consensus 672 ~~l~n~~~ 679 (938)
T TIGR00395 672 ERLYEFAE 679 (938)
T ss_pred HHHHHHHH
Confidence 35555554
No 120
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.93 Score=52.34 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=103.3
Q ss_pred HHhcCCChhhHHHHhhCHHHHHHHHHHHHHcccCCCCchhhhHHHH-HHHhhCC---------CCccCChHHHHHHHhcC
Q 004546 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYP---------TNALVHRPTLLLYIVSS 85 (745)
Q Consensus 16 f~~iGl~e~ka~e~~kn~~~~~~l~~~i~~a~~~~~~dk~~g~lly-~la~~~~---------~~~~~~~~~~~~~I~~~ 85 (745)
-...||++.-|.-++.++.++.-+..++....- .|...+.+. .|+..+. +-..++...|+..|.+|
T Consensus 311 ~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~----~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g 386 (483)
T COG0064 311 IKEYGLSEYDARVLTSDKELADYFEEAVKAGAD----AKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEG 386 (483)
T ss_pred HHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHcC
Confidence 348999999999999999999888777543321 233333221 1222221 11235688999999999
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhcc--ccchhhhHHHH-Hhh
Q 004546 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRY--RTNVGDLFAHV-RKR 162 (745)
Q Consensus 86 ~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry--~~n~g~l~~~~-r~~ 162 (745)
+|.+..--+....-+.+.+ -+..+.-++-|...+-.+++|+++|+++|++|...+++-|= .--+|=++|+| |+.
T Consensus 387 ~IS~k~AK~~v~~~~~~~~---~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T 463 (483)
T COG0064 387 TISGKIAKELVFEILANGG---KDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKAT 463 (483)
T ss_pred CccHHHHHHHHHHHHHccC---CCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 9987554444555455432 57889999999999777779999999999999998776432 01133344443 222
Q ss_pred CCCCChhhHHHHHHHH
Q 004546 163 LPWADPKIVKQLIDAR 178 (745)
Q Consensus 163 LkwAd~~~vk~~vd~~ 178 (745)
=-=|||..+...|-..
T Consensus 464 ~GkAnP~~v~~ll~~~ 479 (483)
T COG0064 464 KGKANPQQVNELLKEK 479 (483)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3357888777766544
No 121
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.02 Score=65.86 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=61.6
Q ss_pred cccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHHhhccCCCcceeeecceeeEEEc
Q 004546 532 LMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 532 l~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~~l~~~~~R~~aV~dp~kl~i~n 597 (745)
..++..++..||.|+||.+|++.+||+.....++...+++.+.+|.........+.+|..||.+.|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 467888999999999999999999999987778899999999999999999999999999999887
No 122
>PLN02886 aminoacyl-tRNA ligase
Probab=94.00 E-value=0.11 Score=58.51 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=58.9
Q ss_pred eEEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCC----c--ccchHHHHHHHHHHHHHcCCCCCC--cCC
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----P--EAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTD----p--~re~~e~~~~I~edL~wLGi~pd~--i~~ 345 (745)
.|.+=| .|||.+||||.-.++-+|..-.. +..+++=|-|.- + ..+..++...+..++-.+|++|++ ++.
T Consensus 48 ~v~sGi--qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 48 RVVSGV--QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred eEEEEE--CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 355555 46799999999888888865554 555555566542 1 112334445566778889999985 788
Q ss_pred CchhHHHHHHHHHHHHHcCCcccCCCCHHHHH
Q 004546 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (745)
Q Consensus 346 qSd~~~~~ye~A~~LI~~G~AY~C~cs~eel~ 377 (745)
||+. .++.+++-. +.|.++--++.
T Consensus 125 QS~v-~e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHV-PAHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCC-chhHHHHHH-------HHhhCcHHHHH
Confidence 9984 344554433 45666655554
No 123
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=93.91 E-value=0.13 Score=63.68 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=46.9
Q ss_pred cEEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHH
Q 004546 496 YVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (745)
Q Consensus 496 ~~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (745)
....+|++..+|.|||||+||. .+...+.++ |.+.++|.||+..|-...+..++.+.+.+.
T Consensus 564 ~v~~hG~vl~~G~KMSKS~GNv---------------Vdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~ 624 (897)
T PRK12300 564 GIVVNGFVLLEGKKMSKSKGNV---------------IPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESV 624 (897)
T ss_pred EEEEcceEEECCccccCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHH
Confidence 3445788777999999999983 466677765 899999999998776666666776666554
No 124
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.53 E-value=0.21 Score=56.95 Aligned_cols=76 Identities=20% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH-cCCEEEEEeecC-------CcccchHHHHHHHHHHHHHcCCCCCC--cCCCchhHH
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~-~~G~~iLRidDT-------Dp~re~~e~~~~I~edL~wLGi~pd~--i~~qSd~~~ 351 (745)
.|||.+||||.-.++-||.-... .+..++.=|-|. ||++.. +....+..++-.+|++|++ +++||+.-
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr-~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQ-RSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHH-HHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 68999999999999989887754 355666656554 333322 3334456667778999985 78899853
Q ss_pred HHHHHHHH
Q 004546 352 ELYELAVE 359 (745)
Q Consensus 352 ~~ye~A~~ 359 (745)
++.+++-.
T Consensus 88 eh~EL~wi 95 (431)
T PRK12284 88 EIPELTWL 95 (431)
T ss_pred hHHHHHHH
Confidence 45555433
No 125
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.14 E-value=0.24 Score=56.03 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEEeecC----Ccc---cchHHHHHHHHHHHHHcCCCCCC--cCCCchh
Q 004546 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPE---AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 349 (745)
Q Consensus 282 sPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT----Dp~---re~~e~~~~I~edL~wLGi~pd~--i~~qSd~ 349 (745)
.|||.+||||.-.++-||. ..+.++.+++=|-|. ++. .+..+....+..++-.+|++|++ ++.||+.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v 85 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV 85 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc
Confidence 5789999999999888776 334566766666664 221 23345555677888889999975 7889986
No 126
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=93.06 E-value=0.39 Score=46.70 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=71.6
Q ss_pred CChHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHh--hcccc
Q 004546 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRT 150 (745)
Q Consensus 73 ~~~~~~~~~I~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~--~ry~~ 150 (745)
.+...|+.++.+|+|.. .+....+..+-++ .-+.++.-+..|.+..-++++|++.|+++|++|.+++.+ .+=.-
T Consensus 43 ~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~---~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k 118 (148)
T PF02637_consen 43 EHLAELINLLEDGKISK-KSAKELLRELLEN---GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK 118 (148)
T ss_dssp HHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH---TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc---CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence 57888999999999976 6778888877654 356788888889988777899999999999999877643 12112
Q ss_pred chhhhHHHHHhhC-CCCChhhHHHHHHHH
Q 004546 151 NVGDLFAHVRKRL-PWADPKIVKQLIDAR 178 (745)
Q Consensus 151 n~g~l~~~~r~~L-kwAd~~~vk~~vd~~ 178 (745)
-+|-|+|++-+.. -=|||+.|++.+.+.
T Consensus 119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 119 AIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 3677888886554 479999999988764
No 127
>PLN02943 aminoacyl-tRNA ligase
Probab=92.83 E-value=0.19 Score=62.84 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=49.3
Q ss_pred cEEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHH
Q 004546 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 496 ~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (745)
.+|-|+.+ +.+|.|||||+|+. .+...+.++ |.|+++|.|++..+. ..+..++++.|.+ ++
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGNV---------------IDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCCC---------------CCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 46777776 68999999999983 466777766 999999999988665 5566788887765 44
Q ss_pred Hhhc
Q 004546 575 EELN 578 (745)
Q Consensus 575 ~~l~ 578 (745)
.+++
T Consensus 631 ~~~~ 634 (958)
T PLN02943 631 AFTN 634 (958)
T ss_pred HHHH
Confidence 4444
No 128
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=92.81 E-value=0.88 Score=44.38 Aligned_cols=101 Identities=27% Similarity=0.358 Sum_probs=75.6
Q ss_pred CChHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCH-HHHHHHHHHHHHhhhhHHHhhccc--
Q 004546 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSS-EDIELTVNEVFEENKNTILELRYR-- 149 (745)
Q Consensus 73 ~~~~~~~~~I~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~-e~i~~~V~~~i~~~~~~~~~~ry~-- 149 (745)
.+...|+..|.+|+|+. .+....++.+-+.+ -+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-|=.
T Consensus 42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~~---~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~ 116 (147)
T smart00845 42 EHLAELLKLIEDGTISG-KIAKEVLEELLESG---KSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKK 116 (147)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcC---CCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHH
Confidence 57888999999999986 55666777765542 46889999999875 776 599999999999998876653211
Q ss_pred cchhhhHHHHHhh-CCCCChhhHHHHHHHH
Q 004546 150 TNVGDLFAHVRKR-LPWADPKIVKQLIDAR 178 (745)
Q Consensus 150 ~n~g~l~~~~r~~-LkwAd~~~vk~~vd~~ 178 (745)
-.+|.+||++-+. =-=|||+.+.+.|...
T Consensus 117 k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 117 KALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 1377778887544 3348999998887653
No 129
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.05 E-value=0.2 Score=62.16 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=54.7
Q ss_pred CchhHHHHHHHHHHHHH--HcCCEEEEE---eecCC-cc------------------------------------cchHH
Q 004546 287 LHIGHAKAMFVDFGLAK--ERGGYCYLR---YDDTN-PE------------------------------------AEKKE 324 (745)
Q Consensus 287 LHIGhaRaal~n~~~Ar--~~~G~~iLR---idDTD-p~------------------------------------re~~e 324 (745)
|||||+++..+-+.+|| +..|.-+|+ +|.+- |. .-...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999998 456766666 33221 11 01124
Q ss_pred HHHHHHHHHHHcCCC--CCCcCCCchhHHHHHHH----HHHHHHcCCccc
Q 004546 325 YIDHIEEIVQWMGWE--PFKITYTSDYFQELYEL----AVELIRRGHAYV 368 (745)
Q Consensus 325 ~~~~I~edL~wLGi~--pd~i~~qSd~~~~~ye~----A~~LI~~G~AY~ 368 (745)
|.+.+.++++.||+- |+..+.+.| +.|++. ..+|.++|+.|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 457789999999975 777665555 334433 458999999995
No 130
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=91.98 E-value=0.23 Score=62.17 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHH
Q 004546 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 497 ~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (745)
.+-||++ ..+|+|||||+||. .+...+.++ |.+.|+|.|++..+....+..++++.+-+.++.
T Consensus 579 v~~hG~Vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~ 642 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGNY---------------VDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRK 642 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCCc---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHH
Confidence 4556664 56999999999983 466677766 889999999999887666777888884445555
Q ss_pred hhcc
Q 004546 576 ELNK 579 (745)
Q Consensus 576 ~l~~ 579 (745)
++++
T Consensus 643 ~l~k 646 (975)
T PRK06039 643 FLLT 646 (975)
T ss_pred HHHH
Confidence 4443
No 131
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=91.94 E-value=0.27 Score=60.33 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=47.8
Q ss_pred cEEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHH
Q 004546 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 496 ~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (745)
.++.+|++ +.+|+|||||+|+ ..++..+.++ |.++++|.|++ .+-...+..++.+.+.. ++
T Consensus 519 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~~-~~ 580 (800)
T PRK13208 519 NIMISGMVLDPDGKKMSKSKGN---------------VVTPEELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVKI-GR 580 (800)
T ss_pred eEEEeeEEECCCCCCCCCCCCC---------------CCCHHHHHHH-cCccHHHHHHh-cCCCCCCceecHHHHHH-HH
Confidence 46667775 5699999999998 3577888876 99999999998 55545555677776654 44
Q ss_pred Hhhc
Q 004546 575 EELN 578 (745)
Q Consensus 575 ~~l~ 578 (745)
++++
T Consensus 581 ~~l~ 584 (800)
T PRK13208 581 RLLT 584 (800)
T ss_pred HHHH
Confidence 4443
No 132
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=91.68 E-value=0.62 Score=45.65 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=57.2
Q ss_pred ChHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchh
Q 004546 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (745)
Q Consensus 74 ~~~~~~~~I~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g 153 (745)
++.-+..|-..|+..--.+..+=+..|.+.- .-.+|+|||++.|.++|++..+. . .-++|
T Consensus 57 r~ea~e~y~~agR~dlae~e~~Ei~iL~~yL---------------P~~lseeEi~~~v~~~i~e~ga~----~-~k~mG 116 (143)
T PF09424_consen 57 RKEAAEQYEKAGRPDLAEKEQAEIEILEEYL---------------PKQLSEEEIEAIVEEAIAELGAS----S-MKDMG 116 (143)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--------------------HHHHHHHHHHHHHHTT------B-GGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------------cCCCCHHHHHHHHHHHHHHhCCC----C-hHHHH
Confidence 3556666777776555556667777777763 24799999999999999987653 1 23699
Q ss_pred hhHHHHHhhCC-CCChhhHHHHHHHH
Q 004546 154 DLFAHVRKRLP-WADPKIVKQLIDAR 178 (745)
Q Consensus 154 ~l~~~~r~~Lk-wAd~~~vk~~vd~~ 178 (745)
.+|+.++..++ =+||+.|...|...
T Consensus 117 ~vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 117 KVMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 99999998755 58999998887654
No 133
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=91.14 E-value=0.5 Score=58.57 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=50.5
Q ss_pred cEEeeeccc-CCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHH
Q 004546 496 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 496 ~~~ef~rLn-~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir 574 (745)
..+-||.+. .+|.|||||+||. .+...+.++ |.++|+|.|++..+....+..++++.+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNv---------------IdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 566778765 7999999999983 456666665 889999999998876666777888887654 3
Q ss_pred Hhhcc
Q 004546 575 EELNK 579 (745)
Q Consensus 575 ~~l~~ 579 (745)
.+.++
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 34443
No 134
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.23 E-value=2.3 Score=48.39 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=50.5
Q ss_pred CcHHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc--------cchHH
Q 004546 259 NTKEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE--------AEKKE 324 (745)
Q Consensus 259 ~t~~~~~~h~~~~~g~V~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~--------re~~e 324 (745)
.+.+.+++.++.. +++.=..=.||| .|||||+-.++.=-.|- ..|=+-+.=+-|- ||+ ...+.
T Consensus 19 ~~ee~l~~ll~~~--~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ-~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~ 95 (401)
T COG0162 19 TDEEELRKLLEEG--PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQ-DAGHKPIVLIGDATAMIGDPSGKSEERKLLTRET 95 (401)
T ss_pred CcHHHHHHHHhcC--CceEEEeeCCCCCccchhhHHHHHHHHHHH-HCCCeEEEEecccceecCCCCCCHHHHhhccHHH
Confidence 4577777776654 454555567899 89999998865422222 2222322222222 442 12234
Q ss_pred HHHHHHHHHHHcCCCCC---CcCCCchhHH
Q 004546 325 YIDHIEEIVQWMGWEPF---KITYTSDYFQ 351 (745)
Q Consensus 325 ~~~~I~edL~wLGi~pd---~i~~qSd~~~ 351 (745)
+.+.+....+.+|...+ ++.+.|+.+.
T Consensus 96 v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~ 125 (401)
T COG0162 96 VLENAETIKKQLGKFLDNKAEFVNNSDWLK 125 (401)
T ss_pred HHHHHHHHHHHhcccCCcceEEEechHHhC
Confidence 44555666677776665 4666777654
No 135
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=89.38 E-value=0.52 Score=58.31 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=47.9
Q ss_pred EEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHH
Q 004546 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 497 ~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (745)
.+-||++ ..+|.|||||+|+. .+...+.++ |.++++|.|++.. -...+..++++.+...++.
T Consensus 598 v~~hG~vl~~~G~KMSKSkGNv---------------I~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~ 660 (861)
T TIGR00392 598 VITHGFTLDEKGRKMSKSLGNV---------------VDPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVEK 660 (861)
T ss_pred hEecceEECCCCCCcCCCCCCC---------------CCHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHH
Confidence 3446665 45899999999983 466777765 9999999999987 4455557888888776554
Q ss_pred hhc
Q 004546 576 ELN 578 (745)
Q Consensus 576 ~l~ 578 (745)
+.+
T Consensus 661 ~~n 663 (861)
T TIGR00392 661 YRK 663 (861)
T ss_pred HHH
Confidence 433
No 136
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=89.32 E-value=0.78 Score=58.04 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=47.5
Q ss_pred EEeeecccC-CCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHHHHH
Q 004546 497 VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 497 ~~ef~rLn~-~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ir~ 575 (745)
.+-||++.. +|.|||||+||. .....+.++ |.++++|.|++..+....+..++++.|+.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 555677754 999999999983 345556654 889999999998776666777888877553 34
Q ss_pred hhc
Q 004546 576 ELN 578 (745)
Q Consensus 576 ~l~ 578 (745)
+++
T Consensus 588 f~n 590 (1052)
T PRK14900 588 FAN 590 (1052)
T ss_pred HHH
Confidence 444
No 137
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=89.25 E-value=1.8 Score=52.27 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=51.2
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCCcCchhHH-HHHHHHHHHHHHcCCEEEEEeecCC-----cc----cchHHHHHHHH
Q 004546 261 KEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHA-KAMFVDFGLAKERGGYCYLRYDDTN-----PE----AEKKEYIDHIE 330 (745)
Q Consensus 261 ~~~~~~h~~~~~g~V~tRFaPsPtG~LHIGha-Raal~n~~~Ar~~~G~~iLRidDTD-----p~----re~~e~~~~I~ 330 (745)
.+-|++-++. +..++.=..=.|||.+||||. -. .++.....+.|..+++=|-|.- +. +........+.
T Consensus 20 ~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~-aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~ 97 (682)
T PTZ00348 20 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFK-AVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 97 (682)
T ss_pred HHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHH-HHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHH
Confidence 4444443432 223333334467899999993 23 3444444466777766666642 21 11122234567
Q ss_pred HHHHHcCCCCCC--cCCCchhHH
Q 004546 331 EIVQWMGWEPFK--ITYTSDYFQ 351 (745)
Q Consensus 331 edL~wLGi~pd~--i~~qSd~~~ 351 (745)
.++..+|++|++ +.+||+.+.
T Consensus 98 ~~~lA~GlDpeK~~~~~qSd~i~ 120 (682)
T PTZ00348 98 EVWKAAGMDMDKVLFLWSSEEIT 120 (682)
T ss_pred HHHHHcCCCccceEEEECcHhhh
Confidence 788899999985 778998443
No 138
>PHA01735 hypothetical protein
Probab=87.22 E-value=1.1 Score=38.62 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--CCCCHHHHHHHcCCCeeeCHHHHHHH
Q 004546 76 PTLLLYIVSSKIKTPAQLEAAFSFFASTGS--ENFEVDEFEEACGVGVEVSSEDIELT 131 (745)
Q Consensus 76 ~~~~~~I~~~~i~t~~Ql~aA~kyl~~~~~--~~id~~~Fe~acGVGv~vt~e~i~~~ 131 (745)
..+.+.|.+|.-+| +.|.||++||++|.- -+.|-.-+.+-.|+=-.+|+|++++.
T Consensus 19 ~El~~RiksgeATt-aDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 19 NELLSRIKSGEATT-ADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred HHHHHHHhcCcccH-HHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 45788899998764 999999999999853 25677788898998889999998764
No 139
>PLN02959 aminoacyl-tRNA ligase
Probab=86.96 E-value=1.7 Score=55.25 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=44.4
Q ss_pred EEeeecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHH
Q 004546 497 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (745)
Q Consensus 497 ~~ef~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (745)
+..+|++..+|.|||||+||. .++..+.++ |.+.++|.|++..|-...+..++...+.+.
T Consensus 706 v~v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~ 765 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA 765 (1084)
T ss_pred EEEccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH
Confidence 345677889999999999983 466777765 999999999988765555556666544333
No 140
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.13 E-value=1.4 Score=54.79 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEEee--cC-----------------------Ccc----cc---hHHH
Q 004546 280 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYD--DT-----------------------NPE----AE---KKEY 325 (745)
Q Consensus 280 aPsPtG~LHIGhaRaal~n~~~Ar~--~~G~~iLRid--DT-----------------------Dp~----re---~~e~ 325 (745)
||..||-+|||||.+=++-+.+-|. ..|.-+-|.- || ..+ .+ ..++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999988877773 2343332222 11 111 11 2367
Q ss_pred HHHHHHHHHHcCC--CCCCcCCC--chhHHHHHHHHHHHHHcCCcccCC
Q 004546 326 IDHIEEIVQWMGW--EPFKITYT--SDYFQELYELAVELIRRGHAYVDH 370 (745)
Q Consensus 326 ~~~I~edL~wLGi--~pd~i~~q--Sd~~~~~ye~A~~LI~~G~AY~C~ 370 (745)
++...++++.||+ +|+.+|.+ -+|.+.......+|.++|+.|...
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~ 185 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGY 185 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCC
Confidence 7888899999997 46666544 456666666678999999999643
No 141
>PLN02843 isoleucyl-tRNA synthetase
Probab=85.65 E-value=2.4 Score=53.42 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=42.9
Q ss_pred cEEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHc--------CCCHHHHHHHHHhcCccCCCcccCH
Q 004546 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIRL 566 (745)
Q Consensus 496 ~~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrr--------G~~PeAI~~fl~~lG~s~~~~~~~~ 566 (745)
.+|.||.+ +.+|.|||||+||. .+...+.+. -|-++++|.|+++..++. +..++.
T Consensus 597 ~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s~ 660 (974)
T PLN02843 597 SVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIGP 660 (974)
T ss_pred eEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeCH
Confidence 46777874 66899999999983 456666652 388999999998766654 445666
Q ss_pred HHHH
Q 004546 567 DRLE 570 (745)
Q Consensus 567 ~~Le 570 (745)
+.|.
T Consensus 661 ~~l~ 664 (974)
T PLN02843 661 QILK 664 (974)
T ss_pred HHHH
Confidence 5555
No 142
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=84.07 E-value=4.5 Score=45.65 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=49.5
Q ss_pred HHHHHHhhhhcCCeEEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEEeecC-----Ccc-----c------chH
Q 004546 261 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (745)
Q Consensus 261 ~~~~~~h~~~~~g~V~tRFaPsPtG-~LHIGhaRaal~n~~~Ar~~~G~~iLRidDT-----Dp~-----r------e~~ 323 (745)
.+.++++++. .-.+.+=| .||| .|||||+-++. +...-+..|-..++=+-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~G~--dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYVGF--DPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEEee--CCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 5677777755 33444444 6789 89999998754 3333344554544445554 331 1 123
Q ss_pred HHHHHHHHHHHHcCCCCC--CcCCCchhHH
Q 004546 324 EYIDHIEEIVQWMGWEPF--KITYTSDYFQ 351 (745)
Q Consensus 324 e~~~~I~edL~wLGi~pd--~i~~qSd~~~ 351 (745)
++.+.|.. .-..|++|+ .+.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 34444333 345688876 3678888654
No 143
>PLN02882 aminoacyl-tRNA ligase
Probab=83.62 E-value=1.5 Score=56.03 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=39.2
Q ss_pred eeeccc-CCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCC-cccCHHHHHHH
Q 004546 499 EYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD-SLIRLDRLEYH 572 (745)
Q Consensus 499 ef~rLn-~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~-~~~~~~~Le~~ 572 (745)
.||++. .+|+|||||++|. .....+.++ |-++|+|.|++...+...+ ..++.+.+.+.
T Consensus 603 vhG~vlde~G~KMSKSlGNv---------------IdP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~ 662 (1159)
T PLN02882 603 CNGLVLAEDGKKMSKSLKNY---------------PDPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEEGVFGV 662 (1159)
T ss_pred EccEEECCCCCCcccCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHHHHHHH
Confidence 356654 4899999999984 233455554 8899999999876654333 35655555544
No 144
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=83.62 E-value=2.6 Score=52.67 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=40.8
Q ss_pred EEeeecc-cCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHH
Q 004546 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (745)
Q Consensus 497 ~~ef~rL-n~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (745)
.+-||++ ..+|.|||||+||. .+...+.++ |-++++|.|++. +-...+..++.+.|.+
T Consensus 579 vl~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 579 VLTHGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred eEEeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 3446764 56999999999984 355566654 899999999997 4334455566666554
No 145
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=83.21 E-value=3 Score=52.46 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=41.9
Q ss_pred cEEeeeccc-CCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHH
Q 004546 496 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (745)
Q Consensus 496 ~~~ef~rLn-~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (745)
..+-||.+. .+|.|||||+||. .....+.++ |.++++|.|++...+ ..+..++.+.|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaD~lRl~lls~~~-~~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIKQ-SGADILRLWVASVDY-SDDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHHh-cCHHHHHHHHHhCCC-CCCcccCHHHHHH
Confidence 467788754 5999999999984 344556654 999999999997544 3444566665544
No 146
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=81.65 E-value=2.8 Score=53.84 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred Eeeec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCcc-CCCcccCHHHHHHHHHH
Q 004546 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIRE 575 (745)
Q Consensus 498 ~ef~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s-~~~~~~~~~~Le~~ir~ 575 (745)
.-||+ |..+|+|||||+||.. || ..+.++ |-++|+|.|+++.+.. ..+..++...+.+..+.
T Consensus 708 lvHG~Vld~dG~KMSKSlGNvI----------DP-----~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~ 771 (1205)
T PTZ00427 708 ICNGLVLASDGKKMSKRLKNYP----------DP-----LYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771 (1205)
T ss_pred EEccEEEcCCCCCcccCCCCCC----------CH-----HHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHH
Confidence 34566 4569999999999842 33 334433 7789999999876543 34546777777666555
Q ss_pred hh
Q 004546 576 EL 577 (745)
Q Consensus 576 ~l 577 (745)
++
T Consensus 772 ~l 773 (1205)
T PTZ00427 772 FI 773 (1205)
T ss_pred HH
Confidence 54
No 147
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=80.62 E-value=0.14 Score=56.17 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=37.5
Q ss_pred cCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCc-ccCHHHHHHHHHH
Q 004546 524 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIRLDRLEYHIRE 575 (745)
Q Consensus 524 v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~-~~~~~~Le~~ir~ 575 (745)
+++|++|+..++..|+++|++|+++++|+...|++...+ ...+...+.++++
T Consensus 258 ~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~ 310 (314)
T PF00749_consen 258 YREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRK 310 (314)
T ss_dssp HHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHH
T ss_pred cccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHH
Confidence 357999999999999999999999999999998876552 2333444444443
No 148
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.59 E-value=5.5 Score=49.33 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=47.7
Q ss_pred HhCCCCCcEEee--ec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccC
Q 004546 489 ALGLYQPYVWEY--SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (745)
Q Consensus 489 aLg~~~P~~~ef--~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~ 565 (745)
+|.-..|...-| |. ++.+|+|||||+||.. || .++.++ |-..|+|.+++..+..-.+..++
T Consensus 502 ~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 502 HLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-YGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred HhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-hChHHHHHHHHhccCCCcccCcC
Confidence 344456754444 43 4789999999999842 33 345544 77889999999887777777788
Q ss_pred HHHHHH
Q 004546 566 LDRLEY 571 (745)
Q Consensus 566 ~~~Le~ 571 (745)
+..++.
T Consensus 566 ~~~~~~ 571 (877)
T COG0525 566 EKRVEG 571 (877)
T ss_pred HHHHHH
Confidence 877774
No 149
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=78.08 E-value=5.7 Score=49.12 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=36.0
Q ss_pred cccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHHH
Q 004546 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (745)
Q Consensus 509 kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~ 572 (745)
|||||++| ..+..++.++ |.++++|.|++..|--..+..++.+.+.+.
T Consensus 570 KMSKS~GN---------------~i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 570 KMSKSKGN---------------VVDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred EeCCCCCC---------------CCCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 99999998 3577787776 999999999988764444545665555543
No 150
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=77.66 E-value=4.8 Score=48.03 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=32.7
Q ss_pred cEEeeec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCC
Q 004546 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (745)
Q Consensus 496 ~~~ef~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~ 560 (745)
....+|. ++.+|+|||||+||. .+...+.++ |-+.++|-|++..+-...
T Consensus 547 ~v~~hG~vld~~G~KMSKS~GNv---------------i~p~~ii~~-yGaD~lRl~~~~~~~~~~ 596 (601)
T PF00133_consen 547 KVITHGFVLDEDGRKMSKSKGNV---------------IDPEDIIEK-YGADALRLWLASSADPGQ 596 (601)
T ss_dssp EEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH-T-HHHHHHHHHHHS-TTS
T ss_pred eeeecccccccceeecccCCCcc---------------cCHHHHHHH-hCcHHHHHHHHhcCCccc
Confidence 3455666 467999999999983 577888876 999999999986554333
No 151
>PLN02381 valyl-tRNA synthetase
Probab=73.98 E-value=4.7 Score=51.34 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=33.6
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC------c----ccchHHHHHHHHHHHHHcCCC
Q 004546 283 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN------P----EAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 283 PtG~LHI--GhaRaal~n~~~Ar~~~G~~iLRidDTD------p----~re~~e~~~~I~edL~wLGi~ 339 (745)
-||..|+ +|.- -.|.++++||=.++-=|++-- . .....++-+.|.++|+-.|+-
T Consensus 378 GTG~V~i~PaHd~---~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l 443 (1066)
T PLN02381 378 GTGAVKITPAHDP---NDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLY 443 (1066)
T ss_pred CCCcEEecCCCCh---HHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 5778887 3433 367788888755444443321 0 123457778899999998874
No 152
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.87 E-value=6 Score=43.09 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=48.6
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHH---cCCEEEEEeecCCcc---cchHHHHHHHHHH---HHHcCCCCCC--cCCCchh
Q 004546 281 PEPNGYLHIGHAKAMFVDFGLAKE---RGGYCYLRYDDTNPE---AEKKEYIDHIEEI---VQWMGWEPFK--ITYTSDY 349 (745)
Q Consensus 281 PsPtG~LHIGhaRaal~n~~~Ar~---~~G~~iLRidDTDp~---re~~e~~~~I~ed---L~wLGi~pd~--i~~qSd~ 349 (745)
--|||.+||||-..|+-+|.--.. .+-.+++-+-|...- .....+.+++.++ |-..|++|.+ ..+||+-
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~V 99 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDV 99 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeeccc
Confidence 469999999999999999864432 233577777776411 1122555666665 4556999986 6678873
Q ss_pred HHHHHHH
Q 004546 350 FQELYEL 356 (745)
Q Consensus 350 ~~~~ye~ 356 (745)
.+.-++
T Consensus 100 -pqh~el 105 (347)
T KOG2713|consen 100 -PQHAEL 105 (347)
T ss_pred -hHHHHH
Confidence 334333
No 153
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=73.63 E-value=4 Score=50.67 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=34.6
Q ss_pred cccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHH
Q 004546 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 570 (745)
Q Consensus 509 kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le 570 (745)
|||||++| ..++..+.++ |.+.|+|-|++..+--..+..++.+.++
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~ 649 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLE 649 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHH
Confidence 99999998 4578888876 9999999999876544444445555554
No 154
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=73.14 E-value=6.6 Score=49.68 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCCcCch--hHHHHHHHHHHHHHHcCCEEEEEeecCC-----c----ccchHHHHHHHHHHHHHcCCC
Q 004546 283 PNGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN-----P----EAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 283 PtG~LHI--GhaRaal~n~~~Ar~~~G~~iLRidDTD-----p----~re~~e~~~~I~edL~wLGi~ 339 (745)
-||..|+ ||.- -.|.++++||=.++-=+++.- . .....++-+.|.++|+-.|+-
T Consensus 312 GTG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 312 GTGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 3788887 4433 367788888754444333221 1 123567788999999998874
No 155
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.53 E-value=3.4 Score=50.84 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=34.0
Q ss_pred ecccC-CCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCC
Q 004546 501 SRLNV-SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (745)
Q Consensus 501 ~rLn~-~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~ 561 (745)
|++-. +|.||||||+|. .++..+.+. |-+.++|-|++..|-...+
T Consensus 570 GmVl~~~g~KMSKSKgN~---------------v~p~~~i~~-yGADt~Rl~~m~~ap~~~d 615 (814)
T COG0495 570 GMVLGEEGEKMSKSKGNV---------------VDPEEAVEK-YGADTVRLYIMFAAPPEQD 615 (814)
T ss_pred ceEEecCCCccccccCCC---------------CCHHHHHHH-hCchHHHHHHHhhCChhhC
Confidence 34334 799999999983 577777766 8889999999988854443
No 156
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.24 E-value=10 Score=45.98 Aligned_cols=69 Identities=26% Similarity=0.387 Sum_probs=43.0
Q ss_pred hcCCeEEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE---EeecCCcccchHHHHHHHHHHHHHcCCCCC
Q 004546 270 VTGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL---RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 341 (745)
Q Consensus 270 ~~~g~V~tRFa-PsPtG~LHIGhaRaal---~n~~~Ar~~~G~~iL---RidDTDp~re~~e~~~~I~edL~wLGi~pd 341 (745)
.++++..+-|| |.-||.||+||+.++- |.-+|-|- +|+.+| -|-.|-- -.....+...+.++.+|..||
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL-~Gk~vLfPfgFHCTGM--PI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERL-QGKNVLFPFGFHCTGM--PIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHh-cCceEEeecccccCCC--ccHHhHHHHHHHHHHhCCCCC
Confidence 34556667774 8889999999998853 22334444 444333 4445541 122345666777888888876
No 157
>PLN02563 aminoacyl-tRNA ligase
Probab=63.59 E-value=9.5 Score=48.12 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.0
Q ss_pred CCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCcccCHHHHHH
Q 004546 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (745)
Q Consensus 506 ~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~ 571 (745)
.+.|||||++|. .....+.++ |-++++|.|++..+....+...+.+.++.
T Consensus 720 ~~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g 769 (963)
T PLN02563 720 RAHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEG 769 (963)
T ss_pred cccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHH
Confidence 345999999983 345566654 88999999999887655554455444544
No 158
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=62.46 E-value=2.4e+02 Score=32.92 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=93.2
Q ss_pred HHHhcCCChhhHHHHhhCHHHHHHHHHHH--HHcccCCCCchhhhHHHHH-HHhhCC-----C--Cc--cCChHHHHHHH
Q 004546 15 LFLKIGLDDRTAKNTIANNKVTANLTAVI--HEAAVTDGCERRIGNLLYT-VATKYP-----T--NA--LVHRPTLLLYI 82 (745)
Q Consensus 15 lf~~iGl~e~ka~e~~kn~~~~~~l~~~i--~~a~~~~~~dk~~g~lly~-la~~~~-----~--~~--~~~~~~~~~~I 82 (745)
|-...||+-+.|.-++-++.+..-.++.+ .+..... ..|..-+-+.. ....++ + +. .+....++..+
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll 405 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAET-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLL 405 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccc-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHHh
Confidence 46678999999999999988877764332 2222211 22222222111 111111 1 11 12356777888
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhc--cccchhhhHHHHH
Q 004546 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVR 160 (745)
Q Consensus 83 ~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~r--y~~n~g~l~~~~r 160 (745)
-++.|....-.+ -+..+.+++ +..+...+-++--.+-.=.|++|++.|..++++|-..+.+-| -.-.++.+.|.+.
T Consensus 406 ~~~~Is~~~ak~-ll~~l~~~~-~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~G~vm 483 (505)
T KOG2438|consen 406 SEETISALSAKQ-LLRHLLKNP-GVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLIGLVM 483 (505)
T ss_pred hhhhhhHHHHHH-HHHHHHhCC-CcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888877633222 233333343 212444443333333334999999999999999888765433 2234666777775
Q ss_pred hh-CCCCChhhHHHHHHHH
Q 004546 161 KR-LPWADPKIVKQLIDAR 178 (745)
Q Consensus 161 ~~-LkwAd~~~vk~~vd~~ 178 (745)
+. -.-|+++++...+.+.
T Consensus 484 k~s~g~a~p~~le~~l~~~ 502 (505)
T KOG2438|consen 484 KSSQGRANPKDLEKILEEL 502 (505)
T ss_pred HHhhcCCCHHHHHHHHHHH
Confidence 43 7889999888877654
No 159
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.31 E-value=18 Score=44.08 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=64.1
Q ss_pred cHHHHHHhhhhcCC-eEEEEeCCCCCCcCchhHHHHHHHHH-----HHHHHcCCEEEEEeecCC-c-----------ccc
Q 004546 260 TKEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDF-----GLAKERGGYCYLRYDDTN-P-----------EAE 321 (745)
Q Consensus 260 t~~~~~~h~~~~~g-~V~tRFaPsPtG~LHIGhaRaal~n~-----~~Ar~~~G~~iLRidDTD-p-----------~re 321 (745)
.++++.+.+...++ ..+.- +.||-||||||+.-++-+ .+|...+..|++-.|--- | +.+
T Consensus 45 ~~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~ 121 (937)
T KOG0433|consen 45 PPEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE 121 (937)
T ss_pred ChHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc
Confidence 35666666655443 23322 289999999999887744 444444444444333221 1 111
Q ss_pred ---------------hHHHHHHHHHHHHHcCCC--CCCcC--CCchhHHHHHHHHHHHHHcCCcccCC
Q 004546 322 ---------------KKEYIDHIEEIVQWMGWE--PFKIT--YTSDYFQELYELAVELIRRGHAYVDH 370 (745)
Q Consensus 322 ---------------~~e~~~~I~edL~wLGi~--pd~i~--~qSd~~~~~ye~A~~LI~~G~AY~C~ 370 (745)
..+++..-++.++..|+. |..+| .+.+|--.-.+...+|.++|..|+.+
T Consensus 122 ~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 122 GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 235566667778888986 54544 44555444445566899999999865
No 160
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.05 E-value=46 Score=36.69 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCcCchhHHHHHHHHHHHHHHcCCEEEEEeecCCcc-------cchHHHHHHHHHHHHHcCCCCCCc
Q 004546 284 NGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE-------AEKKEYIDHIEEIVQWMGWEPFKI 343 (745)
Q Consensus 284 tG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~-------re~~e~~~~I~edL~wLGi~pd~i 343 (745)
++.|||||+-.+++.-++-..++..++..++|-..- .....|...=..|+=.+|++|..-
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kT 162 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKT 162 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcce
Confidence 578999999999999888888999888777654310 011233332334555689988763
No 161
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.89 E-value=14 Score=46.31 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=27.9
Q ss_pred eec-ccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcC
Q 004546 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 556 (745)
Q Consensus 500 f~r-Ln~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG 556 (745)
||. |.-+|.|||||+||. ..-..+..+ |-++++|-|+++.-
T Consensus 592 HGfvlDe~GrKMSKSlGN~---------------v~P~~V~~~-yGADiLRLwv~ssd 633 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNV---------------VDPQDVIDK-YGADILRLWVASSD 633 (933)
T ss_pred cccEECCCCCCccccCCCc---------------CCHHHHHHh-hCchheeeeeeecC
Confidence 454 788999999999984 233444443 55667777776555
No 162
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=37.31 E-value=1.1e+02 Score=32.15 Aligned_cols=28 Identities=36% Similarity=0.429 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHHhh
Q 004546 4 VSKGDKSEILELFLKIGLDDRTAKNTIA 31 (745)
Q Consensus 4 ~~~~~~~~~~~lf~~iGl~e~ka~e~~k 31 (745)
++.++.+++.++..++||-..||+.+.+
T Consensus 64 l~~a~~~~l~~~I~~iGlyr~KAk~I~~ 91 (211)
T COG0177 64 LLNADEEELEELIKSIGLYRNKAKNIKE 91 (211)
T ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4567889999999999999999998753
No 163
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=3.7e+02 Score=26.92 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=61.1
Q ss_pred ChHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchh
Q 004546 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (745)
Q Consensus 74 ~~~~~~~~I~~~~i~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g 153 (745)
++.-+..|-..|+-.=-++..+=+.-|...-+.. .|+++|..+|++.|++--+.-.+ .+|
T Consensus 61 RrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~q---------------Lsd~e~~~~v~~aIae~Gas~~~-----dMG 120 (148)
T COG1610 61 RRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQQ---------------LSEDELRALVDAAIAEVGASSMK-----DMG 120 (148)
T ss_pred HHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCccc---------------CCHHHHHHHHHHHHHHHHHhhHH-----HHH
Confidence 5677777777777665566666666666653222 89999999999999876554422 499
Q ss_pred hhHHHHHhh-CCCCChhhHHHHHHHH
Q 004546 154 DLFAHVRKR-LPWADPKIVKQLIDAR 178 (745)
Q Consensus 154 ~l~~~~r~~-LkwAd~~~vk~~vd~~ 178 (745)
++|+.++.. -.=||+..+-..|-..
T Consensus 121 kvM~al~~k~~GkaD~~~vs~~VK~~ 146 (148)
T COG1610 121 KVMKALKPKVAGKADGGRVSKLVKEL 146 (148)
T ss_pred HHHHHHhHHhcccCcHHHHHHHHHHH
Confidence 999999987 5578888777666543
No 164
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=34.20 E-value=1e+02 Score=28.67 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhh
Q 004546 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (745)
Q Consensus 88 ~t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~ 139 (745)
+..+.++.|++|+...- .. -|+.+|++||+.+|++.+.+-
T Consensus 65 ~G~~K~~~A~~~v~~~L----------~~--~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKERL----------KK--KGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred CcHHHHHHHHHHHHHHH----------HH--cCCCCCHHHHHHHHHHHHHHH
Confidence 67788888888876431 11 267999999999999988763
No 165
>PLN02207 UDP-glycosyltransferase
Probab=33.91 E-value=62 Score=37.73 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHcCCCe------------eeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCChhhHHHHHHHHHH
Q 004546 113 FEEACGVGV------------EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLIDARMY 180 (745)
Q Consensus 113 Fe~acGVGv------------~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~LkwAd~~~vk~~vd~~~~ 180 (745)
..+.-|||| .|+.|+|.++|++++.+ + .++|+-|.-.+-..+|+. .++|-.=...++.-+.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAAIEKFIH 461 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHH
Confidence 355578887 36999999999999962 1 345666677776666654 3354444557787888
Q ss_pred HhcCCCc
Q 004546 181 ELLGERT 187 (745)
Q Consensus 181 ~llGpK~ 187 (745)
++.|-||
T Consensus 462 ~~~~~~~ 468 (468)
T PLN02207 462 DVIGIKT 468 (468)
T ss_pred HHHhccC
Confidence 8877665
No 166
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=29.18 E-value=43 Score=28.92 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCCChhHHHHHHHhcCCChhhHHHHhhC
Q 004546 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN 32 (745)
Q Consensus 4 ~~~~~~~~~~~lf~~iGl~e~ka~e~~kn 32 (745)
.++.++...++.+..+|+++++++.+++|
T Consensus 6 ~~~~R~daA~dam~~lG~~~~~v~~vl~~ 34 (65)
T PF10440_consen 6 KGNERIDAALDAMRQLGFSKKQVRPVLKN 34 (65)
T ss_pred cCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677888899999999999998887765
No 167
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.19 E-value=21 Score=43.61 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=33.3
Q ss_pred ecccCCCccccccccccccccCccCCCCCCCcccHHHHHHcCCCHHHHHHHHHhcCccCCCc
Q 004546 501 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 562 (745)
Q Consensus 501 ~rLn~~g~kLSKRk~~~lv~~g~v~gWDDPRl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 562 (745)
|||-+++.||||+.|| +.||..-.+. |...+.|--++..|=+-.+.
T Consensus 702 GHLmLNsEKMSKSTGN---------------fmTL~qaieK-Fgad~tRlalAdaGD~veDA 747 (1080)
T KOG0437|consen 702 GHLMLNSEKMSKSTGN---------------FMTLEQAIEK-FGADGTRLALADAGDGVEDA 747 (1080)
T ss_pred ceEEecchhhccccCC---------------eeeHHHHHHH-hCccceeeeeecccCCcccc
Confidence 5788899999999998 6788765544 66666776666666554443
No 168
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=2.4e+02 Score=31.36 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCChhhHH
Q 004546 93 LEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVK 172 (745)
Q Consensus 93 l~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~LkwAd~~~vk 172 (745)
|.|.|+++.... ..-+..++++.|- =.|++++.++.-.... +...|+.-.+--|++-||+.+-|.|+..=|
T Consensus 206 l~a~i~ll~qaa-~~~~~~~l~~~~a----adPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 206 LQAQIELLEQAA-ATPEIQDLQRRLA----ADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHH----hCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 567788876543 4456778888776 5777888777766554 445777777889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchh
Q 004546 173 QLIDARMYELLGERTAA 189 (745)
Q Consensus 173 ~~vd~~~~~llGpK~~~ 189 (745)
..|+ +++++||.+..
T Consensus 277 ~lle--~f~~~g~~Dp~ 291 (304)
T COG3118 277 TLLE--LFEAFGPADPL 291 (304)
T ss_pred HHHH--HHHhcCCCCHH
Confidence 9987 89999999764
No 169
>PTZ00183 centrin; Provisional
Probab=23.38 E-value=6e+02 Score=23.65 Aligned_cols=47 Identities=13% Similarity=0.363 Sum_probs=35.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC-CeeeCHHHHHHHHHHH
Q 004546 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGV-GVEVSSEDIELTVNEV 135 (745)
Q Consensus 89 t~~Ql~aA~kyl~~~~~~~id~~~Fe~acGV-Gv~vt~e~i~~~V~~~ 135 (745)
+..++..+++.+..+..+.++..+|...|-- |..++++++...+..+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4578889999887666667999999887632 5668999988877643
No 170
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=22.87 E-value=97 Score=32.35 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHcCCEEEEEeecCCcccc---hH----HHHHHHHHHHHHcCCCCCCcCCCchhHHHHHHHHHHHH
Q 004546 289 IGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE---KK----EYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 361 (745)
Q Consensus 289 IGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re---~~----e~~~~I~edL~wLGi~pd~i~~qSd~~~~~ye~A~~LI 361 (745)
.||+-.|++||-|.++++=+.+.-| |+||... .. .-.+.+.+-++..+++---.+..+++ -++.|+.|+
T Consensus 92 ~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~---AQ~vad~Lv 167 (211)
T COG2344 92 VGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH---AQEVADRLV 167 (211)
T ss_pred cChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH---HHHHHHHHH
Confidence 5677778999999998887765554 7887631 11 22355555566666654445666665 667788898
Q ss_pred HcCC
Q 004546 362 RRGH 365 (745)
Q Consensus 362 ~~G~ 365 (745)
+.|=
T Consensus 168 ~aGV 171 (211)
T COG2344 168 KAGV 171 (211)
T ss_pred HcCC
Confidence 8874
No 171
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.80 E-value=71 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.3
Q ss_pred hHHHHHHHhcCCChhhHHHHhhCH
Q 004546 10 SEILELFLKIGLDDRTAKNTIANN 33 (745)
Q Consensus 10 ~~~~~lf~~iGl~e~ka~e~~kn~ 33 (745)
+|.++-+.++|.+++.|..++++-
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 577888999999999998887754
No 172
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=21.66 E-value=2e+02 Score=25.62 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCchhhhHHHHHHHhhCCCCccCChHHHHHHHhcCCCCCHH-----hHHHHHHHHHh
Q 004546 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIKTPA-----QLEAAFSFFAS 102 (745)
Q Consensus 50 ~~~dk~~g~lly~la~~~~~~~~~~~~~~~~~I~~~~i~t~~-----Ql~aA~kyl~~ 102 (745)
-+.|.=..-++|-++..-..+...+..++-.++.++.+.... +++||++|+.+
T Consensus 44 ~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~~~~~~~e~~y~ltt~~aA~~~i~~ 101 (104)
T PF02204_consen 44 ISADDLLPILIYVLIKSNPPNLYSNIKYIEDFIDSSLLSGEEGYYLTTFEAAVEYIQN 101 (104)
T ss_dssp B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHccccccCCHHHHHHHHHHHHHHHHHH
Confidence 457888899999999776666666778888888777777754 48999999976
No 173
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=20.37 E-value=1.6e+02 Score=30.32 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCeeeCHHHHHHHHHHHHHhhhhHHHhhccccchhhhHHHHHhhCCCCC
Q 004546 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWAD 167 (745)
Q Consensus 90 ~~Ql~aA~kyl~~~~~~~id~~~Fe~acGVGv~vt~e~i~~~V~~~i~~~~~~~~~~ry~~n~g~l~~~~r~~LkwAd 167 (745)
...-..-+++|..++...+...++-+..| ||+.+|..-+..+ + .--.+++-|+++.|+..+|+.|.|..
T Consensus 15 ~~~~~~il~~l~~~~~~~vs~~~L~~~~~----v~~~tirrDl~~l-~----~~G~~~~gy~v~~l~~~~~~~l~~~~ 83 (213)
T PRK05472 15 LPLYYRYLKELKEEGVERVSSKELAEALG----VDSAQIRKDLSYF-G----EFGKRGVGYNVEELLEFIEKILGLDR 83 (213)
T ss_pred hHHHHHHHHHHHHcCCcEEeHHHHHHHhC----cCHHHHHHHHHHH-H----hcCCCCCCeeHHHHHHHHHHHhCCCC
Confidence 34556677888877545799999999999 6677777766655 2 12246777889999999999888875
No 174
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.14 E-value=66 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=14.6
Q ss_pred CCeeeCHHHHHHHHHHHHHhhh
Q 004546 119 VGVEVSSEDIELTVNEVFEENK 140 (745)
Q Consensus 119 VGv~vt~e~i~~~V~~~i~~~~ 140 (745)
.||.||++||.++|+.+...|.
T Consensus 63 ~gI~vsd~evd~~i~~ia~~n~ 84 (118)
T PF09312_consen 63 LGIKVSDEEVDEAIANIAKQNN 84 (118)
T ss_dssp CT----HHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHcC
Confidence 5788999999999988877654
Done!