Query 004546
Match_columns 745
No_of_seqs 344 out of 2384
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:42:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004546.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1849-1853//hhsearch_pdb/004546hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hz7_A Glutaminyl-tRNA synthet 1.0 1 1 958.1 41.4 442 261-709 52-520 (851)
2 1qtq_A GLNRS, protein (glutami 1.0 1 1 953.2 40.0 445 261-710 12-471 (553)
3 3aii_A Glutamyl-tRNA synthetas 1.0 1 1 899.0 32.4 416 268-714 90-510 (553)
4 4gri_A Glutamate--tRNA ligase; 1.0 1 1 624.2 18.4 312 261-597 9-344 (512)
5 2ja2_A Glutamyl-tRNA synthetas 1.0 1 1 597.0 19.9 310 271-609 3-346 (498)
6 1j09_A Glutamyl-tRNA synthetas 1.0 1 1 596.6 18.7 288 274-597 1-314 (468)
7 2cfo_A Glutamyl-tRNA synthetas 1.0 1 1 596.1 21.4 294 274-597 1-319 (492)
8 4g6z_A Glutamate-tRNA ligase; 1.0 1 1 585.1 18.1 287 272-597 23-334 (490)
9 3afh_A Glutamyl-tRNA synthetas 1.0 1 1 568.4 12.9 290 270-597 21-325 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 1.0 1 1 557.9 9.7 287 273-597 128-429 (592)
No 1
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=958.11 Aligned_cols=442 Identities=39% Similarity=0.706 Sum_probs=422.3
Q ss_pred HHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89999854202-99179983899998484468999999799998719879999534882104189999999999984999
Q 004546 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 261 ~~~~~~~~~~~-~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~ 339 (745)
..+++++|+.. .++|||||||||||||||||||||++||++||+|+|+|+|||||||++|+.++|+++|++||+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99998774058868569975899888722899999999999999739989998786886526689999999999986999
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99-7577741199999999999981885568999999999630----468998999997776688998744754589708
Q 004546 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (745)
Q Consensus 340 pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~----~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~ 414 (745)
|| .++|||+||+.||+++++||++|+||+|+||+++|++.|+ ++++|+||+++.+|++.+|++|..|.+.+|++|
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99984327332999999999998779937626999999998600011688863335797777667899866975568705
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHCCCC
Q ss_conf 99972478999787760799982289998899421023222111101135872201068400025147999999819999
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 494 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~aLg~~~ 494 (745)
+|+|+++.+++.+++|||+||+...+||+||++|+||||||||||||||+|||||||||.||++|++.|.||+++|||+.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCHHHHHCHHHHHHHHHHCCCCC
T ss_conf 99852566667899886788766888776699776364313610764203786235555635658598999999739999
Q ss_pred -CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf -8378500136898100124322111257657888887300999998699989999999861956889644787799999
Q 004546 495 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 495 -P~~~ef~rLn~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 573 (745)
|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++..|+.++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 98734888865787612252442223457546777841658999998499999999999953998776620088799998
Q ss_pred HHHHCCCCCCCEEEECCEEEEEECCCCCCEEEEEECCCCCCCCC-------------------CCCCEEEEECCCCEEEE
Q ss_conf 98531589863035325046998079871356210359888789-------------------88971684014421453
Q 004546 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVPFSNVVYIE 634 (745)
Q Consensus 574 r~~l~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-------------------~~~g~~~v~~~~~iyIe 634 (745)
+..+++.++|+|+||||+||.|+|+|++. .+++|+||+ + |++|+|.++|++.||||
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie 446 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIE 446 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEE
T ss_pred HHCCCCCCCCCCEEECCEEEEEECCCCCE--EEEECCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEE
T ss_conf 73500256654158633068884489974--798347866---5444555543356665555756750799976839988
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCEEE-EE
Q ss_conf 4533324554535768998899711022899887655999868999999828998888836881148998337-98
Q 004546 635 HSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCHAGICC-LN 709 (745)
Q Consensus 635 ~~D~~~~~~~~~~~l~~g~~v~L~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~~~k~k~~I~Wv~~~~~~~~-~~ 709 (745)
++||++.++++||||+||++|+|+++|+|+|++++ +|++|+|++++|+|..+. +|+|++|||||+..+++| ++
T Consensus 447 ~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~~~~~~~e~r 520 (851)
T 2hz7_A 447 RDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFG-TDEAGQVTHIRATLLGED-AKAAGVIHWVSAERALPAEFR 520 (851)
T ss_dssp GGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEE-ECTTSCEEEEEEEECCTT-CCCSCEECCEETTTCEEEEEE
T ss_pred HHHHHHCCCCCCEECCCCCEEEECCEEEEEEEEEE-ECCCCCEEEEEEEECCCC-CCCCCEEEEEECCCCEEEEEE
T ss_conf 78841135345144589998985472899999988-659998899999976657-745865898226887668999
No 2
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=1.00 E-value=1 Score=953.24 Aligned_cols=445 Identities=47% Similarity=0.827 Sum_probs=423.8
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 899998542029-9179983899998484468999999799998719879999534882104189999999999984999
Q 004546 261 KEVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (745)
Q Consensus 261 ~~~~~~~~~~~~-g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~ 339 (745)
..++++.|+... ++|||||||||||||||||||||++||++||+|+|+|+||||||||+|+.++|+++|++||+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99898675348758569995999888841888899999999999729989998787880015799999999999985999
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99-7577741199999999999981885568999999999630----468998999997776688998744754589708
Q 004546 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (745)
Q Consensus 340 pd-~~~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~----~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~ 414 (745)
|| .++|||+|++.||++|++||++|+||+|+||+++|++.|+ ++++++||+++++|++.+|++|.+|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCEEHCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99987602036999999999999779965257999999987531235788874435745566767999867986678648
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHCCC-
Q ss_conf 9997247899978776079998228999889942102322211110113587220106840002514799999981999-
Q 004546 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 493 (745)
Q Consensus 415 lR~K~d~~~~n~~~~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~aLg~~- 493 (745)
+|+|+++.+++.+++|||+||+...+||+|||+|+||||||||||||||+||||||+||+||++|++.|.||+++|||.
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99862566677899886798865788775699886552312515887526986457606310556999999999749999
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 98378500136898100124322111257657888887300999998699989999999861956889644787799999
Q 004546 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (745)
Q Consensus 494 ~P~~~ef~rLn~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~ 573 (745)
.|.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||++++..+++..|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 98768898456887602240331123457535777820656999998799999999999972988776632455299999
Q ss_pred HHHHCCCCCCCEEEECCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 98531589863035325046998079871356210359888789889716840144214534533324554535768998
Q 004546 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGK 653 (745)
Q Consensus 574 r~~l~~~~~R~~av~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~ 653 (745)
+..+++.++|+|+||||+||.|+|+| +..+.+++|+||+ ++++|.|.++|++.||||++||++.++++||||+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~ 407 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGK 407 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTS
T ss_pred HHCCCCCCCCCCCEECCCEEEEECCC-CCEEEEEECCCCC---CHHHHHHHHHHCCEEEEEHHHHHCCCCCCCCCCCCCC
T ss_conf 73710245555514256068998279-9608997457899---8688662285276578877883036754541378999
Q ss_pred EEEEEECEEEEEEEEEECCCCCCEEEEEEEECCCC-------CCCCCCEEEECCCCCCEEE-EEC
Q ss_conf 89971102289988765599986899999982899-------8888836881148998337-983
Q 004546 654 SVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSK-------KTKPKVFLSFISCHAGICC-LNV 710 (745)
Q Consensus 654 ~v~L~~~~~i~~~~~~~~~~~g~v~e~~~~~~~~~-------~~k~k~~I~Wv~~~~~~~~-~~~ 710 (745)
+|+|+++|+|+|++++ +|++|+|++++|+|+++. .+|+|++|||||+..+++| ++.
T Consensus 408 ~vrL~~~~~i~~~~~~-kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~~~~~~~~~ 471 (553)
T 1qtq_A 408 EVRLRNAYVIKAERVE-KDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL 471 (553)
T ss_dssp EEEETTSCEEEEEEEE-CCSSSCCCEEEECCCSSCC-----------CEECCEESTTCEEEEEEE
T ss_pred EEEECCEEEEEEEEEE-ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf 8996157989999999-869998899999980644468874456569889980468777689996
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=1.00 E-value=1 Score=898.98 Aligned_cols=416 Identities=25% Similarity=0.417 Sum_probs=392.9
Q ss_pred HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 42029917998389999848446899999979999871987999953488210418999999999998499999757774
Q 004546 268 LEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTS 347 (745)
Q Consensus 268 ~~~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~~~~qS 347 (745)
|..++|+|+|||||||||||||||||+|++||++||+|+|+|+||||||||+|+.++|+++|++||+|||+.||+++|||
T Consensus 90 L~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qS 169 (553)
T 3aii_A 90 LAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQS 169 (553)
T ss_dssp CSSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGG
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 88888855998389999876388999999999999974988999878589531568999999999997599999872510
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 11999999999999818855689999999996304689989999977766889987447545897089997247899978
Q 004546 348 DYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (745)
Q Consensus 348 d~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~lR~K~d~~~~n~~ 427 (745)
+||+.|++++++||++|+||+|+||++++++.|+.+++|+||+++.+|++.+|++|.+| .+|++++|+|+++.++|.+
T Consensus 170 dr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 170 DRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGG
T ss_pred CCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCC
T ss_conf 57999999999999769956278989999988626888865569978888899998669--8676389997134567779
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 77607999822899988994210232221111011358722010684000251479999998199998378500136898
Q 004546 428 MYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSN 507 (745)
Q Consensus 428 ~~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~aLg~~~P~~~ef~rLn~~g 507 (745)
++|||+||+...+||+||++|+||||||||||||||+||||||+||.||+.|++.|.||+++||++.|.||||++||.+|
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g 327 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDD 327 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC---
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEECCHHHHHCHHHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 88768998647878754787613361205000020148986572447656387999999997099987089856883187
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 10012432211125765788888730099999869998999999986195688964478779999998531589863035
Q 004546 508 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVV 587 (745)
Q Consensus 508 ~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~l~~~~~R~~av 587 (745)
+|||||+++++|++|.|+||||||++||++||++||+|+||++||+++||++++..++++.|++++|+++++.+||+|+|
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V 407 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFA 407 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEE
T ss_pred CEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 06210110111004664666686337899999749998999999996599986422069999998898750267155413
Q ss_pred ECCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEE
Q ss_conf 32504699807987135621035988878988971684014421453453332455453576899889971102289988
Q 004546 588 LNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTE 667 (745)
Q Consensus 588 ~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~v~L~~~~~i~~~~ 667 (745)
+||+||+|+|+|.. +.+++|+||+ +|++|+|.++|++.||||++||+ + +.|+|+++|||+|++
T Consensus 408 ~~p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i~~~~ 470 (553)
T 3aii_A 408 ADPVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNVIYSG 470 (553)
T ss_dssp ESEEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEEEEET
T ss_pred CCCEEEEEECCCCC--EEEEECCCCC---CCCCCCEEEEECCEEEEECCCCC-----------C-CCEEECCEEEEEEEE
T ss_conf 47679999579986--6888068999---97676179997788999833477-----------6-745336889999987
Q ss_pred EEECCCCCCEEEEEEEECCCC---CCCCC-CEEEECCCCCCEEE-EECCCCC
Q ss_conf 765599986899999982899---88888-36881148998337-9834775
Q 004546 668 VILSDDKETILHIRAEYDPSK---KTKPK-VFLSFISCHAGICC-LNVAAGS 714 (745)
Q Consensus 668 ~~~~~~~g~v~e~~~~~~~~~---~~k~k-~~I~Wv~~~~~~~~-~~~~~g~ 714 (745)
+. |+|+++. .+|+| ++|||||+..++++ ++.|+|+
T Consensus 471 ~~------------~~~~~~~~~~~~k~k~~~i~Wv~~~~~~~~~~~~~~~~ 510 (553)
T 3aii_A 471 GE------------LRYHSEGIEEARELGASMIHWVPAESALEAEVIMPDAS 510 (553)
T ss_dssp TE------------EEEEECSHHHHHHHTCEEECCEEGGGCEEEEEECTTSC
T ss_pred EE------------EEEECCCHHHCCCCCCCEEEECCCCCCEEEEEECCCCC
T ss_conf 78------------89807854430357899899741788657899878986
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=1.00 E-value=1 Score=624.21 Aligned_cols=312 Identities=21% Similarity=0.257 Sum_probs=278.0
Q ss_pred HHHHHHHHHHCC--CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 899998542029--917998389999848446899999979999871987999953488210418999999999998499
Q 004546 261 KEVLDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGW 338 (745)
Q Consensus 261 ~~~~~~~~~~~~--g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi 338 (745)
|-.++.+.+.++ ..|||||||||||||||||||||++||+|||++||+|+|||||||++|+.++|+++|+++|+|||+
T Consensus 9 ~g~~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 9 MGTLEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGI 88 (512)
T ss_dssp ---------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 36543224699988843687696989740089999999999999984998999868689875788999999999998599
Q ss_pred CCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 9997---------577741199999999999981885568999999999630--------46899899999777668899
Q 004546 339 EPFK---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFE 401 (745)
Q Consensus 339 ~pd~---------~~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~--------~~~~~~~R~~s~ee~l~~f~ 401 (745)
+||+ +++||+|++.|++++++||++|+||+|+||++++++.|. ++|++.||+++.++.
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~----- 163 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEV----- 163 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHH-----
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHH-----
T ss_conf 888687668887772251039999999999987598532224347888887754026899866343302201234-----
Q ss_pred HHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCEEECCCHHC
Q ss_conf 874475458970899972478999787760799982289998899----4210232221111011358722010684000
Q 004546 402 DMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGD----KWCIYPSYDYAHCIVDSIENITHSLCTLEFE 477 (745)
Q Consensus 402 ~M~~G~~~~g~~~lR~K~d~~~~n~~~~D~V~~Ri~~~~h~~~Gd----~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~ 477 (745)
..+....+++++|+|+++. ++..++|+|.+++.+..+...|| +++|+||||||||||||+|||||||||+||+
T Consensus 164 --~~~~~~~~~~~~R~k~~~~-~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l 240 (512)
T 4gri_A 164 --ENALIKKIKPVVRFKIPLE-GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWV 240 (512)
T ss_dssp --HHHHHTTCCCEEEECCCSS-CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGG
T ss_pred --HHHHHHHCCCEEEECCCCC-CCCEEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCEECCCCCCC
T ss_conf --4444541363123304666-8841111324417741344678638992288522000013125336775362455542
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 2514799999981999983785001-368981001243221112576578888873009999986999899999998619
Q 004546 478 TRRASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 556 (745)
Q Consensus 478 ~~t~~~~~L~~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG 556 (745)
+||++|.||+++|||..|.|.|++. ++.+|+|||||++. .+|.++|+.||.|+||.||++.||
T Consensus 241 ~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 241 SSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp GGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHCCCCCCEEEECCHHCCCCCCCCCCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 2509999999971899985885110105565566733460----------------369999985998277999999837
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEC
Q ss_conf 56889644787799999985315898630353250469980
Q 004546 557 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 557 ~s~~~~~~~~~~Le~~~r~~l~~~~~R~~av~dp~kl~i~n 597 (745)
||..+. -++..+++++..|....+++++++||+.||.+.|
T Consensus 305 ws~~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 305 WSYDDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFN 344 (512)
T ss_dssp BCSSSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 897652-0334599999999742788887416699999989
No 5
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=1.00 E-value=1 Score=596.96 Aligned_cols=310 Identities=20% Similarity=0.265 Sum_probs=274.6
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC--------
Q ss_conf 299179983899998484468999999799998719879999534882104189999999999984999997--------
Q 004546 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 342 (745)
Q Consensus 271 ~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~-------- 342 (745)
++++|||||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89973687793999875489999999999999985997999977699753676999999999998699967786768898
Q ss_pred -CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CE
Q ss_conf -577741199999999999981885568999999999630-------468998999997776688998744754589-70
Q 004546 343 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 413 (745)
Q Consensus 343 -~~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~-------~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g-~~ 413 (745)
++|||+|++.|++++++||++|+||+|+||+++++..|. ++|+++||+++.+|+...+ .+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~--------~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL--------AEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH--------HTTCCC
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH--------CCCCCC
T ss_conf 875410689999999999998599688079999999999998469999899744469999998543--------337981
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHH
Q ss_conf 89997247899978776079998228999889942-----1023222111101135872201068400025147999999
Q 004546 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (745)
Q Consensus 414 ~lR~K~d~~~~n~~~~D~V~~Ri~~~~h~~~Gd~~-----~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~ 488 (745)
++|+|++ .++..+.|.|.+++.+.++.. ++| +|+||||||||||||+|||||||||.||++++++|.||++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred EEEEECC--CCCEEEEECCCCEEEECCCCC--CCCEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHH
T ss_conf 5999879--984578845600375050126--760167348971003188987651689879987223324199999999
Q ss_pred HH-----CCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 81-----999983785001-368981001243221112576578888873009999986999899999998619568896
Q 004546 489 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 562 (745)
Q Consensus 489 aL-----g~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~ 562 (745)
+| |+..|.+.|++. +|.+|+|||||+++ .+|.++|++||+|+||++|+..+||+..+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9986247999975897542677998854566884----------------358989867988999999999848998764
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEC------CCCCCEEEEEEC
Q ss_conf 44787799999985315898630353250469980------798713562103
Q 004546 563 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAK 609 (745)
Q Consensus 563 ~~~~~~Le~~~r~~l~~~~~R~~av~dp~kl~i~n------~~~~~~~~~~~p 609 (745)
.++..++++++.|....+++.+++||+.||.+.| ++.+.+.....|
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~~~l~~ 346 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRD 346 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf -4567989998637852367556203789978866999974479999999999
No 6
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=1.00 E-value=1 Score=596.60 Aligned_cols=288 Identities=24% Similarity=0.335 Sum_probs=257.4
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC---------C
Q ss_conf 1799838999984844689999997999987198799995348821041899999999999849999975---------7
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 344 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~~---------~ 344 (745)
+|||||||||||+|||||+|||++||++||+++|+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 96188697999875489999999999999976997999968589753675999999999998699988787778898884
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECC-
Q ss_conf 77411999999999999818855689999999996304--689989999977766889987447545897089997247-
Q 004546 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM- 421 (745)
Q Consensus 345 ~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~~--~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~lR~K~d~- 421 (745)
|||+|++.|++++++|+++|+||+|+||++++...|.. +|+++||+++.+|+.. .|..|. ++++|+|++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred ECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHHCCC----CCEEEEECCCC
T ss_conf 12377999999999999869958717999999999987177998455799999998---985599----84499962788
Q ss_pred -------------CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHH
Q ss_conf -------------8999787760799982289998899421023222111101135872201068400025147999999
Q 004546 422 -------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (745)
Q Consensus 422 -------------~~~n~~~~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~ 488 (745)
..++..+.|+|++|. +|+||||||||||||+|||||||||.||++++++|.|+++
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~------------dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 221 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKS------------DGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYR 221 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECT------------TSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CCEEEEECCCEEEEECCCCCCCEEEEEC------------CCCEEEHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 7158886451257525668999489904------------8974212188999987799848987042556999999999
Q ss_pred HHCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 81999983785001-36898100124322111257657888887300999998699989999999861956889644787
Q 004546 489 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (745)
Q Consensus 489 aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~ 567 (745)
+||+..|.+.|++. +|.+|+|||||+++ .+|.++|++||+|+||+||+..+||+..+. .+..
T Consensus 222 alg~~~p~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~ 284 (468)
T 1j09_A 222 AFGWEAPRFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIF 284 (468)
T ss_dssp HHTCCCCEEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCC
T ss_pred HCCCCCCEEEEEEEEECCCCCCCCCCCCH----------------HHHHHHHHCCCCHHHHHHHHHHHCCCCCCC-CCCC
T ss_conf 82999975998532447988762332552----------------029999877997999999999853688633-4578
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCEEEEEEC
Q ss_conf 799999985315898630353250469980
Q 004546 568 RLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 568 ~Le~~~r~~l~~~~~R~~av~dp~kl~i~n 597 (745)
.++++++.|.....++.+++|||.||.|.|
T Consensus 285 ~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 285 TLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred CHHHHHHHCCHHHCCCCCCCCCHHHHHHHC
T ss_conf 989998637932147555344867765505
No 7
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=1.00 E-value=1 Score=596.09 Aligned_cols=294 Identities=23% Similarity=0.304 Sum_probs=263.9
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHH
Q ss_conf 179983899998484468999999799998719879999534882104189999999999984999997-5777411999
Q 004546 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (745)
Q Consensus 274 ~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~-~~~qSd~~~~ 352 (745)
+|||||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 95188389999875288899999999999964996999970388663456999999999998699999888355079999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHH--------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECC---
Q ss_conf 99999999981885568999999999630--------4689989999977766889987447545897089997247---
Q 004546 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM--- 421 (745)
Q Consensus 353 ~ye~a~~LI~~G~AY~c~cs~eei~~~R~--------~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~lR~K~d~--- 421 (745)
|++++++|+++|+||+||||++++...|+ ++|+++||+++.+|++. .|..|. ++++|+|++.
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~---~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA---FEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH---HHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH---HHHCCC----CCEEEEECCCCCC
T ss_conf 999999999779826745999999999999985599998995211399999998---986799----8559997588774
Q ss_pred -----------CCCCCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHH
Q ss_conf -----------8999787-7607999822899988994210232221111011358722010684000251479999998
Q 004546 422 -----------QNDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 489 (745)
Q Consensus 422 -----------~~~n~~~-~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~a 489 (745)
..++..+ .|||+||... + +|+|+||||||||||||+||||||+||+||++|+++|.||+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~-----p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP--R-----GEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC--T-----TSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred EEEEECCEEEEEECCCCCCCCEEEEEECC--C-----CCCCCEEEHHHHHHHHHCCCCCEEEECHHHHHCHHHHHHHHHH
T ss_conf 47885242346545656678968997457--8-----8878533220222125308987699843434199999999997
Q ss_pred HCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 1999983785001-368981001243221112576578888873009999986999899999998619568896447877
Q 004546 490 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 568 (745)
Q Consensus 490 Lg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~ 568 (745)
|||..|.+.|.+. +|.+|+|||||+++ .+|.++|++||+|+||++|++.+||+.+....++..
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred CCCCCCEEEEEEEEECCCCCEECCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 3999965997445777998772354785----------------468999877998999999999829999985234569
Q ss_pred HHHHHHHHHCCCCCCCEEEECCEEEEEEC
Q ss_conf 99999985315898630353250469980
Q 004546 569 LEYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 569 Le~~~r~~l~~~~~R~~av~dp~kl~i~n 597 (745)
++++++.|....+++.+++||+.||.+.|
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLN 319 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHH
T ss_pred HHHHHHHCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 99998536953247665445889999877
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=585.11 Aligned_cols=287 Identities=23% Similarity=0.340 Sum_probs=254.9
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCHHH
Q ss_conf 99179983899998484468999999799998719879999534882104189999999999984999997-57774119
Q 004546 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (745)
Q Consensus 272 ~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~-~~~qSd~~ 350 (745)
.++|||||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|+
T Consensus 23 ~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~ 102 (490)
T 4g6z_A 23 TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRM 102 (490)
T ss_dssp -CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCH
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 78814876999999740888999999999997218838998578995415689999999999983999999982015589
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CEEEEEEECC
Q ss_conf 9999999999981885568999999999630--------468998999997776688998744754589-7089997247
Q 004546 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDM 421 (745)
Q Consensus 351 ~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~--------~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g-~~~lR~K~d~ 421 (745)
+.|++++++||++|+||+||||++++++.|. ++|+++||+++.++. . ...+| ++++|||++.
T Consensus 103 ~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~-~~~~g~~~~~R~k~~~ 173 (490)
T 4g6z_A 103 DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------P-EPPAGVAPVLRFRNPL 173 (490)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------C-CCCTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH--------H-HHHCCCCCEEEEECCC
T ss_conf 999999999997799776789989999989888735999898951006886566--------5-6645998369986488
Q ss_pred --------------CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHH
Q ss_conf --------------899978776079998228999889942102322211110113587220106840002514799999
Q 004546 422 --------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (745)
Q Consensus 422 --------------~~~n~~~~D~V~~Ri~~~~h~~~Gd~~~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~ 487 (745)
..++..++|+|++|. + |+||||||||||||+|||||||||+||+++|++|.||+
T Consensus 174 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------D-----G~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~ 241 (490)
T 4g6z_A 174 TGTVAWDDAVKGRVEISNEELDDLVVARP-------D-----GTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINIL 241 (490)
T ss_dssp SSEEEEEETTTEEEEEEGGGCCCCEEECT-------T-----SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEEEEEEEEEECCCCCCCEEEEEE-------C-----CCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 77179997632002006545898289941-------8-----98430107888787659988986642446869999999
Q ss_pred HHHCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 981999983785001-3689810012432211125765788888730099999869998999999986195688964478
Q 004546 488 HALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566 (745)
Q Consensus 488 ~aLg~~~P~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~ 566 (745)
++|||..|.|.|.+. +|.+|+|||||++. .+|.+||++||+|+||+||++.+||+..+. ++
T Consensus 242 ~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~--e~ 303 (490)
T 4g6z_A 242 RALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDA--EI 303 (490)
T ss_dssp HHTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTC--CC
T ss_pred HHCCCCCCEEEEECCEECCCCCCCCCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHCCCCCCC--CC
T ss_conf 975989984998412367998735588998----------------677999887998999999999838999886--55
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCEEEEEEC
Q ss_conf 7799999985315898630353250469980
Q 004546 567 DRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 567 ~~Le~~~r~~l~~~~~R~~av~dp~kl~i~n 597 (745)
..+++++..|....+++.+++||+.||.|.|
T Consensus 304 ~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N 334 (490)
T 4g6z_A 304 FTREQFVEWFDLEHLGKSPAQYDHNKLNWLN 334 (490)
T ss_dssp CCHHHHHHHCCGGGBCSSCEECCHHHHHHHH
T ss_pred CCHHHHHHHCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 6878997627985578877736899999999
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=1.00 E-value=1 Score=568.36 Aligned_cols=290 Identities=22% Similarity=0.319 Sum_probs=252.6
Q ss_pred HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-------
Q ss_conf 0299179983899998484468999999799998719879999534882104189999999999984999997-------
Q 004546 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK------- 342 (745)
Q Consensus 270 ~~~g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~------- 342 (745)
.+.++|||||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++++++|+++|+|||+.||+
T Consensus 21 ~~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 21 RCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ----CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred HCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 13898559879799987637889999999999997699799997008965265799999999999869998868777788
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf --577741199999999999981885568999999999630468998999997776688998744754589708999724
Q 004546 343 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (745)
Q Consensus 343 --~~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~lR~K~d 420 (745)
+++||+|++.|++++++|+++|+||+|+||++++++.+.+.|++. + +.+..|. ++++|+|++
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCH------H------HHHHCCC----CCEEEEECC
T ss_conf 88755307799999999999976996766899999986228888866------6------6874699----955999879
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 7899978776079998228999889942-----10232221111011358722010684000251479999998199998
Q 004546 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 495 (745)
Q Consensus 421 ~~~~n~~~~D~V~~Ri~~~~h~~~Gd~~-----~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~aLg~~~P 495 (745)
.++..+.|.|.+++.+.++.. ++| +|+||||||||||||+|||||||||+||++++++|.||+++|||..|
T Consensus 165 --~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P 240 (488)
T 3afh_A 165 --PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240 (488)
T ss_dssp --SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC
T ss_pred --CCCEEEEECCCEEEEECCCCC--CCEEEEECCCCEEHHHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCCCC
T ss_conf --996467744541575157788--9968990599741154888878766998799865566589999999998099998
Q ss_pred CEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3785001-368981001243221112576578888873009999986999899999998619568896447877999999
Q 004546 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (745)
Q Consensus 496 ~~~ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r 574 (745)
.+.|++. +|.+|+|||||+++ .+|.++|++||+|+||+||++.+||+.... ++..++++++
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~ 302 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQ 302 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGG
T ss_pred EEEEEEEEECCCCCCCCCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf 5999752567998855576886----------------468989877997999999999848998524--4679899986
Q ss_pred HHHCCCCCCCEEEECCEEEEEEC
Q ss_conf 85315898630353250469980
Q 004546 575 EELNKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 575 ~~l~~~~~R~~av~dp~kl~i~n 597 (745)
.|....+++.+++||+.||.+.|
T Consensus 303 ~f~~~~i~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 303 SFDPKDISNKGVIFDYQKLEWVN 325 (488)
T ss_dssp GCCGGGSCSSCEECCHHHHHHHH
T ss_pred HCCHHHCCCCCCCCCHHHHHHCC
T ss_conf 47842257654334867753404
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=557.93 Aligned_cols=287 Identities=22% Similarity=0.332 Sum_probs=246.9
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---------C
Q ss_conf 9179983899998484468999999799998719879999534882104189999999999984999997---------5
Q 004546 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (745)
Q Consensus 273 g~V~tRFaPsPtG~LHIGhaRaal~n~~~Ar~~~G~~iLRidDTDp~re~~~~~~~I~edL~wLGi~pd~---------~ 343 (745)
.+|+|||||||||+|||||+|+|++||++||+|+|+|+|||||||++|+.++++++|+++|+|||+.||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 72799989999998658987999999999996599699995576732321799999999999869998878776788787
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 77741199999999999981885568999999999630468998999997776688998744754589708999724789
Q 004546 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 423 (745)
Q Consensus 344 ~~qSd~~~~~ye~a~~LI~~G~AY~c~cs~eei~~~R~~~~~~~~R~~s~ee~l~~f~~M~~G~~~~g~~~lR~K~d~~~ 423 (745)
++||+|++.|++++++|+++|+||+|+||++++++.+.+.|++. + +.+..|. ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCH------H------HHHHCCC----CCEEEEECC--C
T ss_conf 65527789999999999976993586489999986207888867------7------7864699----853999879--9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEECCCHHCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 9978776079998228999889942-----10232221111011358722010684000251479999998199998378
Q 004546 424 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 498 (745)
Q Consensus 424 ~n~~~~D~V~~Ri~~~~h~~~Gd~~-----~iyPTY~fa~~VDD~l~gITHvlRg~E~~~~t~~~~~L~~aLg~~~P~~~ 498 (745)
++..+.|.|.+++.+.++. . ++| +|+|||||||+||||+|||||||||.||++++++|.||+++|||+.|.+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~-~-~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNST-L-EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSS-S-CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCCEEEECCCCEEEECCCC-C-CCEEEECCCCCEEHHHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHHCCCCCEEE
T ss_conf 8703663343136405556-7-8857984789751263899999866998699866667589999999998189997599
Q ss_pred EEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5001-368981001243221112576578888873009999986999899999998619568896447877999999853
Q 004546 499 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (745)
Q Consensus 499 ef~r-Ln~~g~kLSKRk~~~lv~~~~v~gWdDPrl~TL~~lrrrG~~PeAI~~fl~~lG~s~~~~~~~~~~Le~~~r~~l 577 (745)
|++. +|.+|+|||||+++ .+|.++|++||+|+||+||++.+||+.... +...++++++.|.
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EEEEEECCCCCCCCCCCCC----------------CCHHHHHHCCCCHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHCC
T ss_conf 8520457988754555773----------------348999877998999999999848998533--4579899986478
Q ss_pred CCCCCCCEEEECCEEEEEEC
Q ss_conf 15898630353250469980
Q 004546 578 NKTAPRTMVVLNPLKVVITN 597 (745)
Q Consensus 578 ~~~~~R~~av~dp~kl~i~n 597 (745)
...+++.+++||+.||.+.|
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N 429 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVN 429 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHH
T ss_pred HHHCCCCCCEECHHHHHHHH
T ss_conf 42257556200788875620
Done!