RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004546
(745 letters)
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 1384 bits (3583), Expect = 0.0
Identities = 571/689 (82%), Positives = 620/689 (89%), Gaps = 7/689 (1%)
Query: 13 LELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNAL 72
LELFLKIGLD+RTA+N IANNKVT+NLTAVIHEA VT+GC++ +GNLLYTVATKYP NAL
Sbjct: 9 LELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANAL 68
Query: 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTV 132
VHRPTLL YIVSSKIKTPAQLEAAFSFF+STG E+F++++FEEACGVGV VS EDIE V
Sbjct: 69 VHRPTLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAV 128
Query: 133 NEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLIDARMYELLGERTAADIE 192
NEVFEENK ILE RYRTNVGDL VRKRLPWADPKIVK+LID ++YELLGE+TAAD E
Sbjct: 129 NEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYELLGEKTAADNE 188
Query: 193 KLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEIPFSDG 252
K KKK KEKP K E+KK A A EE+L P S FP PEEN+KVHTE+ FSDG
Sbjct: 189 KPVKKK-----KEKPAKVEEKKVA-VAAAPPSEEELNPYSIFPQPEENFKVHTEVFFSDG 242
Query: 253 SVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLR 312
SVL NTKE+L+KHL+ TGG V TRFPPEPNGYLHIGHAKAMFVDFGLAKERGG CYLR
Sbjct: 243 SVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLR 302
Query: 313 YDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 372
+DDTNPEAEKKEYIDHIEEIV+WMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT
Sbjct: 303 FDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 362
Query: 373 PEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432
PEEIKEYREKKMNSPWRDRPI ESLKLFEDMR G IEEGKATLRMKQDMQNDNFNMYDLI
Sbjct: 363 PEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLI 422
Query: 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL 492
AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDS+ENITHSLCTLEFETRRASY+WLL +LGL
Sbjct: 423 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGL 482
Query: 493 YQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFV 552
YQPYVWEYSRLNV+NTVMSKRKLN LVT KYVDGWDDP L+TLAGLRRRGVT T+INAF
Sbjct: 483 YQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFC 542
Query: 553 QGIGISRSD-SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRW 611
+GIGI+RSD SLIR+DRLE+HIREELNKTAPRTMVVL+PLKVVITN+ESG ++ LDAKRW
Sbjct: 543 RGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRW 602
Query: 612 PDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILS 671
PDAQ DD SAFYKVPFS VVYIE SDFR+KDSKDYYGLAPGKSVLLRYAFPIKCT+V+L+
Sbjct: 603 PDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLA 662
Query: 672 DDKETILHIRAEYDPSKKTKPKVFLSFIS 700
DD ET++ IRAEYDP KKTKPK L +++
Sbjct: 663 DDNETVVEIRAEYDPEKKTKPKGVLHWVA 691
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 610 bits (1575), Expect = 0.0
Identities = 225/426 (52%), Positives = 284/426 (66%), Gaps = 10/426 (2%)
Query: 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
V TRFPPEPNGYLHIGHAK++ ++FGLA++ GG C LR+DDTNPE E +EY+D I+E
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 333 VQWMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSP 387
V+W+G++ ++ Y SDYF +LYE AVELI++G AYVD + EEI+EYR E NSP
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSP 147
Query: 388 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 447
+RDR + E+L LFE MR G EG A LR K DM + N NM D + YRI+ H GDK
Sbjct: 148 YRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDK 207
Query: 448 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVS 506
WCIYP YD+AHCI D+IE ITHSLCTLEFE R Y W+L L + P +E+SRLN++
Sbjct: 208 WCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNLT 267
Query: 507 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566
TVMSKRKL LV K+VDGWDDP + T++GLRRRG T SI F + IG+++ DS+I +
Sbjct: 268 YTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDM 327
Query: 567 DRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVP 626
LE IRE+LN+ APR M VL+PLK+VITN G + L+A P+ D +VP
Sbjct: 328 SMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVP 384
Query: 627 FSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP 686
FS +YIE DF + K Y+ L PGK V LR A+ IKC EV+ D I I YDP
Sbjct: 385 FSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNAYVIKCEEVV-KDADGNITEIHCTYDP 443
Query: 687 SKKTKP 692
+
Sbjct: 444 DTLSGN 449
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 527 bits (1358), Expect = e-180
Identities = 231/452 (51%), Positives = 324/452 (71%), Gaps = 10/452 (2%)
Query: 257 CCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT 316
C NT E+L+KH VTGG RFPPEPNG+LHIGHAK+M ++FG A+ GG CYLRYDDT
Sbjct: 34 CRNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT 93
Query: 317 NPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI 376
NPE E++ YID I E+V+WMGW+P +T++SDYF +L+E AV+LI+ G AYVDH TP+E+
Sbjct: 94 NPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDEL 153
Query: 377 KEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRI 436
K+ RE++ +SPWR+R + E+L LFE MR GR EG+ATLR+K DM++DN NM D IAYR+
Sbjct: 154 KQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRV 213
Query: 437 KFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 496
K+ HPHA DKWCIYPSYD+ HC++DS+E+I +SLCTLEFETRR SYFWLL L L++P+
Sbjct: 214 KYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPH 273
Query: 497 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIG 556
VWE+SRLNV+ +++SKRK+N LV V G+DDP L+TLAG+RRRG T +IN F + +G
Sbjct: 274 VWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVG 333
Query: 557 ISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESG-TIMHLDAKRWPDAQ 615
I+RS ++I++ LE +RE+L++ R ++V++P+KVV+ N + + R P+
Sbjct: 334 ITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGEREFECPNHPRKPELG 393
Query: 616 ADDASAFYKVPFSNVVYIEHSDFRMKDS-KDYYGLAPGKSVL-LRYAFPIKCTEVILSDD 673
+ KV F++ Y++ SDFR +D+ +YGLAPG V+ L+Y+ + C +
Sbjct: 394 SR------KVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAA 447
Query: 674 KETILHIRAEYDPSKKTKPKVFLSFISCHAGI 705
+ + I + D +K KPK +S++S A
Sbjct: 448 GQPSV-IHVDIDFERKDKPKTNISWVSATACT 478
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 500 bits (1289), Expect = e-167
Identities = 202/438 (46%), Positives = 279/438 (63%), Gaps = 11/438 (2%)
Query: 262 EVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 320
E++++ LE V+TRFPPEPNGYLHIGHAK++ ++FG+A++ GG C+LR DDTNPE
Sbjct: 18 EIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPET 77
Query: 321 EKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 379
E EY++ I++ V+W+G++ + Y SDYF+ +Y A +LI+ G AYVD + EEI+E
Sbjct: 78 EDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137
Query: 380 R----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 435
R E SP+RDR + E+L LF MR G +G LR K DM + N + D + YR
Sbjct: 138 RGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYR 197
Query: 436 IKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-- 493
I+ H GD+WCIYP YD+AH + D+IE +THS+CTLEFE RA Y W+L LG +
Sbjct: 198 IRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPP 257
Query: 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 553
+P +E++RL + TVMSKRKL LV YV GWDDP + T+AG RRRGVT +I F
Sbjct: 258 RPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFAD 317
Query: 554 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 613
IG+++++S + + LE+ IR++LN+ APR M VL+PLKVVI N+ +G + LD WP
Sbjct: 318 QIGVAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPH 377
Query: 614 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 673
+ S KVPF+ +YIE DF K + L PG+ V LR A+ I+C EV+ D
Sbjct: 378 DVPKEGSR--KVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLRGAYIIRCDEVV-RDA 434
Query: 674 KETILHIRAEYDPSKKTK 691
+ +R YDP
Sbjct: 435 DGAVTELRCTYDPESAKG 452
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 477 bits (1228), Expect = e-161
Identities = 214/439 (48%), Positives = 282/439 (64%), Gaps = 18/439 (4%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V TRFPPEPNGYLHIGHAK++ ++FG AK G C LR+DDTNP E EY++ I+ V+
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 335 WMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYR----EKKMNSPWR 389
W+G++ KI Y+SDYF ELY A ELI++G AYVD TPEEI+EYR + NSP+R
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYR 120
Query: 390 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 449
DR I E+L LFE MR+G+ +EGKA LR K DM + M D +AYRIKF PH G KWC
Sbjct: 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWC 180
Query: 450 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 508
IYP YD+ HCI D++ENITHSLCTLEF+ R Y W+L + ++ +P +E+SRLN+ T
Sbjct: 181 IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240
Query: 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 568
V+SKRKL LV +K+V GWDDP + T++GLRRRG T SI F IG+++ D+ I + R
Sbjct: 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVR 300
Query: 569 LEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFS 628
LE IRE+LN+ APR M V++P++VVI N+ + P+ +VPF+
Sbjct: 301 LESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL----ATIPNHPNTPEFGERQVPFT 356
Query: 629 NVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYD--- 685
N YI+ +DFR + +K Y L GK V LR A+ IK E + D I I YD
Sbjct: 357 NEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIK-AERVEKDAAGKITTIFCTYDNKT 415
Query: 686 ----PSKKTKPKVFLSFIS 700
P+ K K + ++S
Sbjct: 416 LGKEPADGRKVKGVIHWVS 434
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 415 bits (1070), Expect = e-141
Identities = 136/313 (43%), Positives = 173/313 (55%), Gaps = 10/313 (3%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V TRF P P GYLHIGHA+ ++ AK G LR+DDT+PE EK EY + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLK 61
Query: 335 WMGWEPF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM--NSPWRDR 391
W+G + K Y SD F Y+ A ELI +G AYV TPEE++E RE++ SP R R
Sbjct: 62 WLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPR 121
Query: 392 PIAESLKLFEDM-RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP---HPHAGDK 447
E L+LFE+ R G E GKATLR K M++ + M DL+ RIKF P H G K
Sbjct: 122 YDEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGLK 180
Query: 448 WCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVS 506
W YP+YD+A I D+I ITH L E W+ ALG P++ EY RLN+
Sbjct: 181 WDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLD 240
Query: 507 NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRL 566
T +SKRKL+ V V GW DP L LRRRG T I F + +S L R+
Sbjct: 241 GTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRV 300
Query: 567 -DRLEYHIREELN 578
LE R++L+
Sbjct: 301 SKSLEAFDRKKLD 313
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 307 bits (789), Expect = 8e-97
Identities = 136/441 (30%), Positives = 193/441 (43%), Gaps = 36/441 (8%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V TRF P P GYLHIGHA+ +++ A++ GG LR +DT+PE E E D I E ++
Sbjct: 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLE 69
Query: 335 WMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------NSP 387
W+G + + Y S+ F YE A +LI +G AYV + TPEE++E RE + S
Sbjct: 70 WLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSY 129
Query: 388 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTP-HPH-AG 445
RD +L LFE M + E G A +R+K M + DL+ RI F P HP
Sbjct: 130 DRD---ERNLTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVI 185
Query: 446 DKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-N 504
++ YP+Y++A + D + ITH L + WL ALG P L N
Sbjct: 186 LRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245
Query: 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 564
+SKRK + V+GW P L L L RG +I F GI D I
Sbjct: 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTI 305
Query: 565 RLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYK 624
R++L+ PR M V P++VVI N++ + K
Sbjct: 306 VSKSPAAFDRKKLDWLNPRYMRVD-PVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTK 364
Query: 625 VPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSD---------DKE 675
++ IE DF + + V L+ + EV+ D KE
Sbjct: 365 ---ETLIEIERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKDAEGLITSDWTKE 413
Query: 676 TILH-IRAEYDPSKKTKPKVF 695
I+H ++A PK+F
Sbjct: 414 NIIHWVKAVARLFGVKGPKLF 434
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 290 bits (745), Expect = 1e-87
Identities = 131/328 (39%), Positives = 204/328 (62%), Gaps = 8/328 (2%)
Query: 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
G V TRFPPEP+GYLHIGHAKA ++ A+ G +R+DDTNP E E++++I +
Sbjct: 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKD 271
Query: 333 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 392
++ +G + +TYTSDYF +L E+A +LI+ G AYVD E++++ R + S R+
Sbjct: 272 IETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNS 331
Query: 393 IAESLKLFEDMRNGRIEEGKA-TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY 451
+ E+L+L+++M G E G +R K DMQ+ N ++ D + YR TPH G K+ +Y
Sbjct: 332 VEENLRLWKEMIAGS-ERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVY 390
Query: 452 PSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511
P+YD+A VD++E +TH+L + E+ R A Y+ +L +GL + ++WE+SRLN T++S
Sbjct: 391 PTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLS 450
Query: 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI---GISRSDSLIRLDR 568
KRKL + V N V+GWDDP T+ G+ RRG+ I A Q I G S++ +L+ D+
Sbjct: 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLK---IEALKQFILSQGASKNLNLMEWDK 507
Query: 569 LEYHIREELNKTAPRTMVVLNPLKVVIT 596
L ++ ++ PR VL +V++T
Sbjct: 508 LWTINKKIIDPVCPRHTAVLKEGRVLLT 535
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 279 bits (716), Expect = 3e-85
Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 3/332 (0%)
Query: 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHI 329
G V+ RF P P+G LHIGHA+A ++ AK+ G +R+DDT+P E D I
Sbjct: 89 AKMGEVVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMI 148
Query: 330 EEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR 389
E ++W+G + ++ Y SD + Y+ +LI G AYV PEE +E R + R
Sbjct: 149 LEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEACHCR 208
Query: 390 DRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 449
DR + E+L+ +E+M G+ E G +R+K D+++ N + D + +RI TPHP GDK+
Sbjct: 209 DRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYR 268
Query: 450 IYPSYDYAHCIVDSIENITHSLCTLEF--ETRRASYFWLLHALGLYQPYVWEYSRLNVSN 507
+YP+ D++ I D + +TH L + R+ Y + + W +++
Sbjct: 269 VYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGRLKIDDVR 328
Query: 508 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567
+ + ++ +Y GWDDP L TL +RRRG+ +I F+ IG+ +D +
Sbjct: 329 ALSTSSARKGILRGEYS-GWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWK 387
Query: 568 RLEYHIREELNKTAPRTMVVLNPLKVVITNME 599
+ R+ +++ A R + NP+K+ I +
Sbjct: 388 NIYALNRKIIDEEARRYFFIWNPVKIEIVGLP 419
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 267 bits (683), Expect = 7e-81
Identities = 132/334 (39%), Positives = 203/334 (60%), Gaps = 6/334 (1%)
Query: 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
G ++TRFPPEP+GYLHIGHAKA ++ A+ G LR+DDTNP EK E+ + I E
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 333 VQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 392
+ + +P +++TSDYF+ + A+ LI G AY+D EE+K+ R + S R++
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 393 IAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 452
E+L++F++M +G+ E G LR K DMQ+DN + D + +R TPH +G + YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 453 SYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSK 512
+YD A IVDSIE +TH+L T E++ R A +FW+ ALGL +P + ++R+N NTV+SK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 513 RKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY- 571
RKL + V N +V GWDD T+ G+ RRG+ ++ F+ G SR ++ LD ++
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR--RVVNLDWAKFW 307
Query: 572 -HIREELNKTAPRTMVV--LNPLKVVITNMESGT 602
++E++K A R M + + + +TN +
Sbjct: 308 AENKKEIDKRAKRFMAIDKADHTALTVTNADEEA 341
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 268 bits (687), Expect = 1e-80
Identities = 142/373 (38%), Positives = 217/373 (58%), Gaps = 18/373 (4%)
Query: 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
G V+TRFPPE +G+LHIGHAKA ++ LA + G R+DDTNP EK+ + I +
Sbjct: 51 GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDD 110
Query: 333 VQWMGWEPFKI--TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 390
+ +G + + TY+SDY +YE A ELI++G AY D EE+++ R + + +RD
Sbjct: 111 LATLG-VSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRD 169
Query: 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI 450
+ E+ +L+ +M+ G E + LR K + N+N M D + YR+ TPH G K+
Sbjct: 170 ISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKA 229
Query: 451 YPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVM 510
YP+YD+ I+DS+E +TH+L T E+ R Y+W ALG+ +P V ++SRLN+ +VM
Sbjct: 230 YPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVM 289
Query: 511 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLE 570
SKRKL LV VDGWDDP T+ L RRG+ ++ FVQ G+S++ + + +L
Sbjct: 290 SKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLW 349
Query: 571 YHIREELNKTAPRTMVVLNPLKVVIT-----NMESG-TIMHLDAKRWPDAQADDASAFYK 624
Y + L+ + PR VV N LKV T ++E+ ++H K+ PD +YK
Sbjct: 350 YFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLH---KKVPDM---GEKTYYK 403
Query: 625 VPFSNVVYIEHSD 637
S+V++++ D
Sbjct: 404 ---SDVIFLDAED 413
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 252 bits (646), Expect = 6e-79
Identities = 93/143 (65%), Positives = 110/143 (76%)
Query: 441 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 500
H GDKWCIYP+YD+AH IVDSIE ITHSLCTLEFE RR SY+WL AL LY+P+ WE+
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 501 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560
SRLN++ TVMSKRKL LV YVDGWDDP L TL GLRRRGVT +I F+ G+S++
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 561 DSLIRLDRLEYHIREELNKTAPR 583
DS I D+LE +R++LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 193 bits (493), Expect = 7e-57
Identities = 64/106 (60%), Positives = 86/106 (81%)
Query: 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
V+TRFPPEPNGYLHIGHAKA+ ++FG AK+ GG C LR+DDTNPE E++EY+D I+E V
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 334 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEY 379
+W+G +P+K+TY SDYF +LYE A +LI++G AYV H+T ++ Y
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWCIY 106
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 253 bits (649), Expect = 2e-75
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 28/406 (6%)
Query: 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYID 327
G V+ RF P P+G LH+GHA+A ++ AK GG LR++DT+P ++ E D
Sbjct: 97 AEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYD 156
Query: 328 HIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP 387
I E ++W+G + ++ SD + YE A +LI G AYV PEE KE R+ P
Sbjct: 157 MILEDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCP 216
Query: 388 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK 447
RD+ E+L+L+E M +G +EG+A +R+K D+++ N ++ D +A+RI TPHP GDK
Sbjct: 217 HRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDK 276
Query: 448 WCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVWEYSRLNV 505
+ ++P+Y++A + D + +TH L + T + Y + G P Y RL +
Sbjct: 277 YRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYDYFGWEYPETIHYGRLKI 334
Query: 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565
V+S K+ + GWDDP L TL LRRRG+ +I + +G+ +D+ I
Sbjct: 335 EGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATIS 394
Query: 566 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTI---MHLDAKRWPDAQADDASAF 622
+ L R+ ++ A R V +P+++ I E +H PD
Sbjct: 395 WENLYAINRKLIDPIANRYFFVRDPVELEIEGAEPLEAKIPLH------PD---RPERGE 445
Query: 623 YKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV 668
++P VY+ D A GK V L F ++ T V
Sbjct: 446 REIPVGGKVYVSSDDLE----------AEGKMVRLMDLFNVEITGV 481
>gnl|CDD|218149 pfam04558, tRNA_synt_1c_R1, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 1. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 164
Score = 226 bits (579), Expect = 2e-70
Identities = 84/163 (51%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKY 67
E+L+LF KIGLD++ AK T+ N KV+A+L A+I EA T GC+++ G LLY +ATK
Sbjct: 2 SVEELLKLFSKIGLDEKKAKETLKNKKVSASLLAIIAEAGATSGCDKKTGALLYNLATKL 61
Query: 68 PTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSED 127
N + HRP ++ YIV+ K+KT Q++AA + + GSE F+V EFEEACGVGV V+ ED
Sbjct: 62 KGNEVPHRPLIVSYIVNGKLKTTLQVDAALKYLKANGSEAFDVAEFEEACGVGVVVTPED 121
Query: 128 IELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPWADPK 169
+E V + EENK ILE RY+ NVG L R L WADPK
Sbjct: 122 VERAVADYIEENKEEILEKRYKLFNVGLLLVKARPELKWADPK 164
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 101 bits (252), Expect = 5e-24
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V+TRF P P GYLHIGHA+ +F A++ GG LR +DT+PE + EY++ I E ++
Sbjct: 2 VVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLK 61
Query: 335 WMG--WEPFKITYTSDYFQELYELAVELIRRG 364
W+G W+ SD F A ELI++G
Sbjct: 62 WLGLDWDE-GPYRQSDRFDLYRAYAEELIKKG 92
Score = 84.1 bits (208), Expect = 3e-18
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 450 IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVS-NT 508
YP Y++ H + D++ ITH L + WL ALG P + + RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD--SLIRL 566
+SKRKLN TL LRRRG ++ ++ IG S+ D L L
Sbjct: 153 KLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196
Query: 567 DRLEYHIREELNKTAPRT 584
+ + E +A T
Sbjct: 197 EEMIAAFSVERVNSADAT 214
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 94.2 bits (235), Expect = 2e-22
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 581 APRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRM 640
APR M VL+P+KVVI N G + P + KVPFS +YIE DF+
Sbjct: 1 APRYMAVLDPVKVVIENYPEGEEEEAEVPNHPK---NPELGTRKVPFSREIYIEREDFK- 56
Query: 641 KDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDP-----SKKTKPKV 694
L PG+ V L A+ IK TEV+ D+ + + YD ++K K +
Sbjct: 57 -------RLKPGEEVRLMGAYNIKVTEVV-KDEDGNVTELHCTYDGDSLGGARKVKGII 107
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 94.5 bits (236), Expect = 2e-20
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V+TRF P P GYLH+G+A+ +++ A++ GG LR DDT+ E K+EY D I E ++
Sbjct: 3 VITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLK 62
Query: 335 WMGWEPFKITYTSDYFQELYELAVE-LIRRGHAYVDHQTPEEIKEYREKKMNS----PWR 389
W+G + SD F + Y+ A E L G Y ++TPEE+ E + K S P
Sbjct: 63 WLGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEEL-ELKRKIQLSRGLPPIY 120
Query: 390 DRPIAESLKLFEDMRNGRIEEGKA 413
DR +LKL E+ + EG+
Sbjct: 121 DR---AALKLTEEEKAALEAEGRK 141
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 88.6 bits (220), Expect = 1e-19
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 441 HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFE--TRRASYFWLLHALGLYQPYVW 498
HP G K+ ++P+ ++A + D + +TH L + T + Y + G P
Sbjct: 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--IYEYFGWEYPETI 155
Query: 499 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 558
+ RL + +S K+ + + +GWDDP L TL LRRRG+ +I F+ +G+
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215
Query: 559 RSDSLIRLDRLEYHIREELNKTAPR 583
++D+ I + L R+ ++ A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240
Score = 87.8 bits (218), Expect = 2e-19
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEK--KEYIDHIEE 331
V+ RF P PNG LH+GHA+A ++ AK GG LR+DDT+P ++ E D I E
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 332 IVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQT 372
++W+G + ++ SD + YE A +LI G AYV +T
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYVHPRT 101
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 83.6 bits (207), Expect = 8e-17
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQ 334
V TRF P P GYLHIG A+ ++ AK GG LR +DT+ E +E + I E ++
Sbjct: 2 VRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLK 61
Query: 335 WMG--WE--PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 390
W+G W+ P+ + D +++ + EL+ G AY + + E ++ RE++ +
Sbjct: 62 WLGISWDEGPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLERLREEQKANKETP 118
Query: 391 RPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC 449
R L + + +G +R K Q + D + I F D +
Sbjct: 119 RYDRHCRNLHNEEIENALAKGIPPVVRFKIP-QEGVVSFNDQVRGEITFQ--NSELDDFV 175
Query: 450 IY-----PSYDYAHCIVDSIENITHSL 471
I P+Y++A + D + ITH +
Sbjct: 176 ILKSDGSPTYNFAVVVDDYLMKITHVI 202
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 74.7 bits (183), Expect = 7e-14
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
NV+TRF P P G+LHIG A+ ++ A+ G LR +DT+ E KE ++ I +
Sbjct: 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGL 63
Query: 334 QWMG--WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM------- 384
+W+G W ++ + S E A++L++ G AY EEI+ R++ +
Sbjct: 64 KWLGLDWNG-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFI 122
Query: 385 -NSPWRDR 391
NS WRD+
Sbjct: 123 FNSEWRDK 130
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 70.1 bits (173), Expect = 2e-12
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 274 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
V TRF P P GYLHIG A+ A+F ++ A+ GG LR +DT+ E +E + I E
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTALF-NWLFARHHGGKFILRIEDTDQERSTEEAEEAILEG 62
Query: 333 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 383
++W+G W P Y Y Q ++Y E A +L+ G AY + TPEE++ RE++
Sbjct: 63 LKWLGLDWDEGPDGGPY-GPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQ 121
Query: 384 M--------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMK 418
+ RD E R+ G +R K
Sbjct: 122 RAAGEPPRYDGRCRDLTKEEVAA--------RLAAGEPPVIRFK 157
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 62.2 bits (152), Expect = 9e-11
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
V TRF P P G+LHIG A+ ++ A++ GG LR +DT+ E E + I E +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 334 QWMGWEP 340
+W+G +
Sbjct: 61 KWLGLDW 67
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 62.6 bits (153), Expect = 2e-10
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWM 336
RF P P+G LH G A + A+ GG LR +D +P E D I ++W+
Sbjct: 8 GRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWL 67
Query: 337 G--WEPFKITYTSDYFQELYELAVE-LIRRGHAY 367
G W+ + Y S + Y A++ L +G Y
Sbjct: 68 GLHWDG-PVLYQSQRH-DAYRAALDRLRAQGLVY 99
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 59.3 bits (144), Expect = 3e-09
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 278 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NPEAEKKEYIDHIEEIV 333
RF P P G +HIG+ +A ++ +AK++ +R +DT N E + KE I EI+
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKE----ILEIL 58
Query: 334 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--KKMNSPWRDR 391
G K+ Y S+ + ++A +L+ A+ + EE++ +E K P+R
Sbjct: 59 NLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYD 118
Query: 392 PIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIY 451
E+L+ E + + +R+K+ +F D I + F P D + I
Sbjct: 119 GTCENLEDDEVLNCNK----PFVVRLKKPNHTMSFT--DAIKGEVSF--EPDEIDSFVIL 170
Query: 452 -----PSYDYAHCIVDSIENIT 468
P+Y++A + D + +I+
Sbjct: 171 RADKTPTYNFACAVDDMLYDIS 192
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 57.1 bits (138), Expect = 2e-08
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 269 EVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDH 328
E GG V RF P P G LH+G A+ ++ A+ +GG LR +DT+ KE +
Sbjct: 40 ESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEA 99
Query: 329 IEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEI--- 376
+ ++W+G W+ P Y Q +Y + A +L+ GH Y T EE+
Sbjct: 100 VLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159
Query: 377 KEYREKKMNSP-----WRDRPIAE 395
KE E K P W E
Sbjct: 160 KEEAELKKLPPRYTGKWATASDEE 183
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 48.1 bits (115), Expect = 3e-07
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 170 IVKQLIDARMYELLGERTAADIEKLSKK-KEKKEKKEKPEKDEDKKFANDAPVQLPEEDL 228
K +D ++ ELLG +T AD+ K KK K+KK + K A D +
Sbjct: 1 DFKPEVDMQILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Query: 229 FPISNFPPPEENY 241
F F P ENY
Sbjct: 61 FLGEKFHKPGENY 73
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 46.8 bits (111), Expect = 2e-06
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE------AEKKEYIDHIE 330
RFP EP GYLHIGHAK + AK C +R DD P E +E + IE
Sbjct: 2 ARFPGEP-GYLHIGHAKLI----CRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIE 56
Query: 331 EIVQWMG 337
E + G
Sbjct: 57 EDISVCG 63
Score = 34.1 bits (78), Expect = 0.050
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 461 VDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNTVMSKRK 514
+SIE S+C +F+ R Y W+ + L P E RLN+ TVMSKRK
Sbjct: 52 KESIEED-ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 45.9 bits (109), Expect = 7e-06
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTN-------------P 318
T PNGYLHIGH + + LA+ C DD
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENA 61
Query: 319 EAEKKEYIDHIEEIVQWM 336
+A + +I+ I+E V++M
Sbjct: 62 KAFVERWIERIKEDVEYM 79
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 44.1 bits (105), Expect = 1e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 278 RFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG 337
RF P P+G LH G A + A+ GG +R +D +P E D I ++ G
Sbjct: 4 RFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYG 63
Query: 338 --W-EPFKITYTSDYFQELYELAVE-LIRRGHAY 367
W + Y S LY+ A++ L+ G AY
Sbjct: 64 LHWDGE--VVYQSQR-HALYQAALDRLLAAGLAY 94
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 33.7 bits (77), Expect = 0.34
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 184 GERTAADIEKLSKKKEKKEKKEKPEKDEDKK----FANDAPVQLPEEDLFPISNFPPPEE 239
GER+ ++ E K+KEK+++ +K +DED+ ++PV EE+ P P++
Sbjct: 278 GERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPV--EEEESEEPEPPPLPKK 335
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 32.6 bits (75), Expect = 0.69
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 314 DDTNPEAEKKEYID--------HIEEIVQWMGWEPFKITYTSDYFQELYELAVE 359
+ PE K +D E+ +G E + +D ++LY+L VE
Sbjct: 135 AEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVE 188
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 32.4 bits (74), Expect = 0.99
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 355 ELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 408
+LAVE IR G A + + E + + S + P S E R+G +
Sbjct: 170 DLAVEAIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDET-RDGFV 228
Query: 409 E-EGKATLRMKQD 420
E EG L +++
Sbjct: 229 EAEGAGVLVLERA 241
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 32.2 bits (74), Expect = 1.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 171 VKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK 214
+++ + AR+ + L +T A EK + K KK ++ EK E +K
Sbjct: 364 IEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEK 407
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 32.0 bits (72), Expect = 1.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 190 DIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPP 236
D+ + KK +K +KKEK EK++++ V+ + L + + P
Sbjct: 191 DVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237
Score = 30.8 bits (69), Expect = 2.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 188 AADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFP------PPEENY 241
A + +K K K+KK++KEK EK + KK + P+ N PP +Y
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSSY 330
Query: 242 KVHTE 246
K+ E
Sbjct: 331 KLLAE 335
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 30.7 bits (70), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 543 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRT 584
+T I + IG S D+++ DR IREEL K RT
Sbjct: 98 LTLPGIAGLLTIIGYSVDDTVVIFDR----IREELRKYKGRT 135
>gnl|CDD|233213 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This
bacterial protein is always found with the homologous
protein-export membrane protein SecD. In numerous
lineages, this protein occurs as a SecDF fusion protein
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 246
Score = 31.1 bits (71), Expect = 2.0
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 543 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGT 602
V T++ A + IG S +D+++ DR IRE L K + + I S T
Sbjct: 149 VNLTTVAALLTIIGYSINDTVVVFDR----IRENLRKY--TRKTFTEVINLSINQTLSRT 202
Query: 603 IM 604
I
Sbjct: 203 IN 204
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 31.5 bits (72), Expect = 2.1
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 280 PPEPNGYLHIGHAKA-----MFVDFGLAKERGGY--CYLRYDDTN-----PEAEK----- 322
P PNG H+GH ++ + GY +L D + +AEK
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARY---LRLRGYEVFFLTGTDEHGTKIELKAEKEGITP 69
Query: 323 KEYIDHIEEIVQWMGWEPFKITY------TSDYFQEL 353
+E +D E + + ++ I++ TS +EL
Sbjct: 70 QELVDKNHEEFKEL-FKALNISFDNFIRTTSPEHKEL 105
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 30.4 bits (69), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 185 ERTAADIEKLSK--------KKEKKEKKEKPEKDEDKK 214
+ A +IEK+ K K +KK+ K+K +KD+DKK
Sbjct: 65 KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 29.3 bits (66), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 195 SKKKEKKEKKEKPEKDEDKKFANDAP 220
SKKK+ K+K +K +K +DK D
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEK 116
>gnl|CDD|191653 pfam06962, rRNA_methylase, Putative rRNA methylase. This family
contains a number of putative rRNA methylases. Note that
many family members are hypothetical proteins.
Length = 138
Score = 29.9 bits (68), Expect = 2.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377
T + ++ VELI H +D PE +K
Sbjct: 15 TKEKLEQAGLSEVELILDSHENIDEYIPEPVK 46
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists
of a PIN domain and a Zn-ribbon module [General function
prediction only].
Length = 177
Score = 30.1 bits (68), Expect = 2.5
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 130 LTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLID-ARMYELLGERTA 188
T V EE I + R+ + L + ++ + VK++ + A+ LG +
Sbjct: 30 YTTPSVVEE----IKDRESRSLLELLLESGKVKVAEPSTEYVKEVREAAKKTGDLGNLSP 85
Query: 189 ADIEKLSKKKEKKEKKEKPEKDEDKKFANDA 219
DIE L+ E E+ + +D N A
Sbjct: 86 TDIEVLALALELGEEVQVALATDDYSVQNVA 116
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 31.2 bits (70), Expect = 2.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 176 DARMYE-LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFAND-APVQLPEEDLF 229
+A YE + T ++K S K+ KE +E E++ D + EED
Sbjct: 206 EAIYYEDFFDKPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEP 261
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 31.0 bits (71), Expect = 2.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 182 LLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFA 216
L G + A K +K +K+++E+ ++ + K FA
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 30.5 bits (69), Expect = 2.7
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 155 LFAHVRKRLP-WADPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEK-KEKPEK 209
L A R+ W DP+ D R E+L EK KKK K+ K +EK EK
Sbjct: 161 LVAEAREHFGYWVDPR------DPRFQEML-----QQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 29.8 bits (68), Expect = 3.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 181 ELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKK 214
LL ++ EK KK EK + K + + K E+ K
Sbjct: 61 ALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 196 KKKEKKEKKEKPEKDED 212
++EKKE++E+ E+D+D
Sbjct: 66 AEEEKKEEEEEEEEDDD 82
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 30.8 bits (70), Expect = 3.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 279 FP-PEPNGYLHIGHAKAMF-VDFGLAKER 305
FP P NG LH+GHA ++ ++F A R
Sbjct: 51 FPYPYMNGLLHLGHAFSLSKLEFAAAYHR 79
>gnl|CDD|226987 COG4640, COG4640, Predicted membrane protein [Function unknown].
Length = 465
Score = 30.3 bits (68), Expect = 4.1
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 100 FASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHV 159
+ ++N +V E E V + S D + E F K+ +++ G +
Sbjct: 236 VRQSNTKNVDVTEDLEEDNKTVTLKS-DTKDNDAEKFITIKDIGKKIKDSKTYGPYPQN- 293
Query: 160 RKRLPWADPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDK 213
+A K + I ++ EL+ ++ + + + PEK+E +
Sbjct: 294 TSITIYASGKAKGKTIKSKETELIKAYDLKYNPQIYLDFDSETIEYYPEKNEGE 347
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 28.9 bits (65), Expect = 5.2
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 158 HVRKRLPWA----DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDK 213
VR R+ A + KIVKQ++ + + K KKK+KK+KK+K K K
Sbjct: 84 CVRDRIVRAFLVEEQKIVKQVLKEK------AKQ-----KKQKKKKKKKKKKKTSKKAAK 132
Query: 214 K 214
K
Sbjct: 133 K 133
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.7 bits (64), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 192 EKLSKKKEKKEKKEKPEKDEDKK 214
EK KKK+K +K +KP+K K
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|218457 pfam05135, Phage_connect_1, Phage gp6-like head-tail connector
protein. This family of proteins contain head-tail
connector proteins related to gp6 from bacteriophage
HK97. A structure of this protein shows similarity to
gp15 a well characterized connector component of
bacteriophage SPP1.
Length = 95
Score = 28.1 bits (63), Expect = 5.4
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 310 YLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELI 361
LR DD + + + I EE ++ + Y + L +LAV L+
Sbjct: 6 LLRIDDDSDDDLLELLIKAAEEYIKN--YIGRDFDYDPEEIPPLLKLAVLLL 55
>gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of
RNA. In addition to its role in mRNA degradation, RNase
E has also been implicated in the processing of rRNA,
and the maturation of tRNA, 10Sa RNA and the M1
precursor of RNase P. RNase E associates with PNPase (3'
to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and
enolase (glycolytic enzyme) to form the RNA
degradosome. RNase E tends to cut mRNA within
single-stranded regions that are rich in A/U
nucleotides. The N-terminal region of RNase E contains
the catalytic site. Within the conserved N-terminal
domain of RNAse E and RNase G, there is an S1-like
subdomain, which is an ancient single-stranded
RNA-binding domain. S1 domain is an RNA-binding module
originally identified in the ribosomal protein S1. The
S1 domain is required for RNA cleavage by RNase E. RNase
G is paralogous to RNase E with an N-terminal catalytic
domain that is highly homologous to that of RNase E.
RNase G not only shares sequence similarity with RNase
E, but also functionally overlaps with RNase E. In
Escherichia coli, RNase G is involved in the maturation
of the 5' end of the 16S rRNA. RNase G plays a secondary
role in mRNA decay.
Length = 88
Score = 27.9 bits (63), Expect = 5.5
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 293 KAMFVDFGLAKERGGYCYLRYDDTNPEAEKK 323
+A FVD GL K +L D P KK
Sbjct: 23 QAAFVDIGLGKN----GFLHLSDILPAYFKK 49
>gnl|CDD|221911 pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster binding domain. The
2Fe-2S ferredoxin family have a general core structure
consisting of beta(2)-alpha-beta(2) which abeta-grasp
type fold. The domain is around one hundred amino acids
with four conserved cysteine residues to which the
2Fe-2S cluster is ligated.
Length = 107
Score = 28.3 bits (64), Expect = 5.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 659 YAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSF-ISCHAGIC 706
Y + +L + + +I+ E DP+ L+F SC G+C
Sbjct: 20 YEVEYEEGMTVL----DALNYIKEEQDPT--------LAFRASCREGVC 56
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 6.0
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 617 DDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEV----ILSD 672
DD + +P + V + H +FR+ +++ G G+ L R AF + E+ I D
Sbjct: 980 DDNRELF-IPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSR-AFRNRFLEMHFDDIPED 1037
Query: 673 DKETILHIRAEYDPS 687
+ E ILH R E PS
Sbjct: 1038 ELEEILHGRCEIAPS 1052
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.8 bits (67), Expect = 6.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 169 KIVKQL---IDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKK 214
K VK + I + ++LG T +K KK+ K+ K+K K+ K
Sbjct: 123 KPVKNVLESIMEGLDKILGIET--KAKKGKAKKKTKKSKKKEAKESSDK 169
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 29.7 bits (67), Expect = 6.5
Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 27/140 (19%)
Query: 104 GSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 163
G + E + +E ++V D ++T + ++ + N F R +
Sbjct: 362 GGDAEEFEAEKEPM---LKVCRVDRQVTEII--DGDEPVDYCISLSYNELSYFDP-RLQK 415
Query: 164 PWADP---KIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAP 220
WA P K R + R AAD K + +K+KK KE E D F
Sbjct: 416 NWAGPEHWKF-------RRTKRPEPRAAAD-TKSAAEKQKKRAKEPFEID----FGAPL- 462
Query: 221 VQLPEEDLFPISNFPPPEEN 240
E++ F PP+ N
Sbjct: 463 -----EEIDFEVIFQPPKAN 477
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.4 bits (66), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 183 LGERTAADIEKLSKKKEKK-EKKEKPEKDEDKK 214
E E K+KE+ E KEK +KDE KK
Sbjct: 402 AKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 28.5 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 183 LGERTAADIEKLSKKKEKKEKKEKPEKDEDKK 214
A++E+ KK++KK+K+ K EK E K
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 27.4 bits (61), Expect = 9.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 193 KLSKKKEKKEKKEKPEKDEDK 213
K+ KK+KK+KK+K + E+
Sbjct: 16 KIDVKKKKKKKKKKNKSKEEV 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,536,987
Number of extensions: 3876740
Number of successful extensions: 5362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5207
Number of HSP's successfully gapped: 114
Length of query: 745
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 641
Effective length of database: 6,324,786
Effective search space: 4054187826
Effective search space used: 4054187826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)