RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004546
(745 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 715 bits (1848), Expect = 0.0
Identities = 208/461 (45%), Positives = 287/461 (62%), Gaps = 19/461 (4%)
Query: 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPE 319
++++D+ L V TRFPPEPNGYLHIGHAK++ ++FG+A++ G C LR+DDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 320 AEKKEYIDHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 378
E EY++ I+ V+W+G+ + Y+SDYF +L+ A+ELI +G AYVD TPE+I+E
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 379 YR----EKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAY 434
YR + NSP+RDR + E+L LFE MR G EEGKA LR K DM + M D + Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 435 RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 493
RIKF H G+KWCIYP YD+ HCI D++E ITHSLCTLEF+ R Y W+L + +
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251
Query: 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 553
P +E+SRLN+ TVMSKRKLN LVT+K+V+GWDDP + T++GLRRRG T+ SI F +
Sbjct: 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 311
Query: 554 GIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPD 613
IG+++ D+ I + LE IRE+LN+ APR M V++P+K+VI N + G + P
Sbjct: 312 RIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHP- 369
Query: 614 AQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDD 673
+VPFS ++I+ +DFR + +K Y L GK V LR A+ IK V D
Sbjct: 370 --NKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVE-KDA 426
Query: 674 KETILHIRAEYDPSKKT-------KPKVFLSFISCHAGICC 707
+ I I YD + K K + ++S +
Sbjct: 427 EGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPV 467
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 721 bits (1863), Expect = 0.0
Identities = 177/521 (33%), Positives = 263/521 (50%), Gaps = 30/521 (5%)
Query: 208 EKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKH 267
E+D F+ +P L ++ P P P ++ E++++
Sbjct: 6 EQDRGAPFSGRSPRILTRM-----TDAPRPTAGADAPARPP--AAPLVAPNFITEIIERD 58
Query: 268 LEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 326
LE V+TRFPP+P+GY H+GH A +DF A++ GG LR DDTNPE ++EY+
Sbjct: 59 LEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYV 118
Query: 327 DHIEEIVQWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM- 384
D I + ++W+G + Y SDYF Y A +LIR+G AYV+ +PEE+ R
Sbjct: 119 DSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATT 178
Query: 385 ---NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPH 441
SP+RDR + E+L L M+ G +G+ LR K D+ N + D + YRI PH
Sbjct: 179 PGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPH 238
Query: 442 PHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-YQPYVWEY 500
D+W IYP+YD+ H + D+IE +THS+C+LEF RA Y WL+ L +P+ +E+
Sbjct: 239 FRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEF 298
Query: 501 SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560
R + T+ SKRKL LV V GWDDP + TL RR GVT ++ AF IG+SR+
Sbjct: 299 GRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRT 358
Query: 561 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLD------------- 607
+ + + E +R++LN APR M VL+P+KV +TN++ + L
Sbjct: 359 NRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDG 418
Query: 608 -AKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCT 666
+ A VP + +YIE DF K + L PG +V LR A I+
Sbjct: 419 LVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRAD 478
Query: 667 EVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCHAGICC 707
+ +D+ + HIRA K + ++S +
Sbjct: 479 DFG-TDEAGQVTHIRATLLGEDA-KAAGVIHWVSAERALPA 517
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 601 bits (1551), Expect = 0.0
Identities = 111/473 (23%), Positives = 189/473 (39%), Gaps = 30/473 (6%)
Query: 233 NFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHA 292
N PEE + + K + L G V+ RF P P+G LHIGHA
Sbjct: 58 NSLSPEEQQQEMERLGLEITERK---QKKRKGLRELAGVKGEVVLRFAPNPSGPLHIGHA 114
Query: 293 KAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQE 352
+A ++ A++ G LR +DT+P E D I ++W+G E + SD +
Sbjct: 115 RAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSDRMET 174
Query: 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGK 412
YE +LI RG AYV PEE +E + + R E+L+ + +M +EG
Sbjct: 175 YYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGS 232
Query: 413 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLC 472
A +R+K D+ + N + D ++ RI HP G ++ +YP +++ + D + +TH L
Sbjct: 233 AVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLR 292
Query: 473 TLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCL 532
+ R +L LG P Y RL + + +S + GWDDP L
Sbjct: 293 GKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRL 352
Query: 533 MTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLK 592
TL + RRG+ +I + IG+ +DS + ++ R L + A R +P+K
Sbjct: 353 GTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVK 412
Query: 593 VVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPG 652
+ + + + ++ PD + VY+ D
Sbjct: 413 LEVVGLPGP--VRVERPLHPD---HPEIGNRVLELRGEVYLPGDDLGEGP---------- 457
Query: 653 KSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSFISCHAGI 705
+ L A + + L +E + + ++ + +
Sbjct: 458 --LRLIDAVNVIYSGGELR--------YHSEGIEEARELGASMIHWVPAESAL 500
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA
LIG amidotransferase, ligase; 2.30A {Saccharomyces
cerevisiae}
Length = 187
Score = 211 bits (539), Expect = 2e-64
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 8 DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKY 67
E+ +LF ++G +D+ K + N KV+ +L +I E + L++ +A+
Sbjct: 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFV 62
Query: 68 PTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSED 127
L ++ I++ +KT Q++AAF + + G E GVG+E++ +
Sbjct: 63 KGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEA-STKMGMNENSGVGIEITEDQ 121
Query: 128 IELTVNEVFEENKNTILELRYRTNVGDLFAHVR--KRLPWADPKIVKQLIDARMYELLGE 185
+ V + +ENK IL RY+ G +FA V+ K L WADP+ K +ID + +LLG
Sbjct: 122 VRNYVMQYIQENKERILTERYKLVPG-IFADVKNLKELKWADPRSFKPIIDQEVLKLLGP 180
Query: 186 RTAADI 191
+ D+
Sbjct: 181 KDERDL 186
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 83.8 bits (208), Expect = 4e-17
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 45/220 (20%)
Query: 274 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
V TRF P P G++H+G+ + A++ + A++ G LR +DT+ E +E +D I E
Sbjct: 25 PVRTRFAPSPTGFIHLGNIRSALY-PWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEG 83
Query: 333 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 383
+ W+G + P Y+Q + Y E+ ++ +G Y + + EE+ RE++
Sbjct: 84 MAWLGLDYDEGP--------YYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQ 135
Query: 384 M--------NSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYR 435
+ WR P + G LR + D + R
Sbjct: 136 RAAGEKPRYDGTWRPEPGKVL----PEPPAGV----APVLRFRNP-LTGTVAWDDAVKGR 186
Query: 436 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 469
++ + D + P Y++ +VD ++ ITH
Sbjct: 187 VEI-SNEELDD-LVVARPDGTPMYNFC-VVVDDLDMGITH 223
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 78.7 bits (195), Expect = 4e-16
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIE 330
T + RF P P+G LH G A + A+ R G +R +D +P E + I
Sbjct: 2 TDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETIL 61
Query: 331 EIVQWMG--W--EPFKITYTSDYFQ----ELYELAVE-LIRRGHAYVDHQTPEEIKEYRE 381
++ G W + +Q + Y A+ L +G +Y T I+
Sbjct: 62 RQLEHYGLHWDGDV--------LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG 113
Query: 382 KKMNSPWRDRPIAES-----LKL------FEDMRNGRIE 409
+ R ++ F D G I
Sbjct: 114 -IYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIH 151
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 79.6 bits (197), Expect = 1e-15
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 50/225 (22%)
Query: 275 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
V R P P G LHIG A+ A+F ++ A+ RGG LR +DT+ E + EY ++I E +
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVF-NWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60
Query: 334 QWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 384
QW+G W P YFQ +LY + L+ +G AY + TPEE++ R ++
Sbjct: 61 QWLGLTWDEGP--------YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQK 112
Query: 385 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND-NFNMYDLIAY 434
++ R E + G +R K + + DL+
Sbjct: 113 AKGQAPRYDNRHRHLTPEE--------QAAFEAAGRTPVIRFKIEDDRQIEWQ--DLVRG 162
Query: 435 RIKFTPHPHAGDKWCI----------YPSYDYAHCIVDSIENITH 469
R+ + GD I YP Y+ + D IT
Sbjct: 163 RVSWQGADLGGD-MVIARAAPRGEIGYPLYNLVVVVDDIAMGITD 206
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 75.7 bits (187), Expect = 2e-14
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 37/220 (16%)
Query: 275 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
V RF P P G+LH+G A+ A+F +F A++ G LR +DT+ E ++EY + + E +
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALF-NFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 334 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 384
+W+G W+ P Y Q E+Y E A L++ G AY + PEEI+E REK +
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 385 --------NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 435
+ ++ + R E+G + + K M ++ + D++
Sbjct: 133 SEGKAPHYSQEMFEK------FDTPERRREYEEKGLRPAVFFK--MPRKDYVLNDVVKGE 184
Query: 436 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 469
+ F GD + I P+Y++A C+VD + ITH
Sbjct: 185 VVF-KTGAIGD-FVIMRSNGLPTYNFA-CVVDDMLMEITH 221
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 75.3 bits (186), Expect = 2e-14
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 275 VLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIV 333
V+TR P P G H+G A A+F ++ A+ GG +R +DT+ + I +
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALF-NYAWARRNGGRFIVRIEDTDRARYVPGAEERILAAL 60
Query: 334 QWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKM 384
+W+G ++ P Y Q LY + A EL++RG AY +TPEE+++ R++K
Sbjct: 61 KWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG 120
Query: 385 --NSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYRIKFTPH 441
+ R+ P E+ + R G +R+K + + D + + + +
Sbjct: 121 GYDGRARNIPPEEAEE--------RARRGEPHVIRLKVP-RPGTTEVKDELRGVVVY-DN 170
Query: 442 PHAGDKWCI----YPSYDYAHCIVDSIE-NITH 469
D + YP+Y A +VD +T
Sbjct: 171 QEIPDVVLLKSDGYPTYHLA-NVVDDHLMGVTD 202
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 71.0 bits (175), Expect = 6e-13
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 38/220 (17%)
Query: 274 NVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEI 332
V RF P P G H+G + A+F ++ A+ GG R +DT+ + + +E + +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALF-NWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDA 64
Query: 333 VQWMG--W--EPFKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKK 383
++W+G W P Y Q E+Y ++ L+ G AY TPEE++
Sbjct: 65 LRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAA 124
Query: 384 MNSP-------WRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQNDNFNMYDLIAYR 435
+P R A+ + EG + +R++ M +D+ DL+
Sbjct: 125 GRNPKLGYDNFDRHLTDAQRAA--------YLAEGRQPVVRLR--MPDDDLAWNDLVRGP 174
Query: 436 IKFTPHPHAGDKWCI-----YPSYDYAHCIVDSIE-NITH 469
+ F D + + P Y D ITH
Sbjct: 175 VTF-AAGSVPD-FALTRASGDPLYTLV-NPCDDALMKITH 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 1e-11
Identities = 86/583 (14%), Positives = 173/583 (29%), Gaps = 162/583 (27%)
Query: 221 VQLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFP 280
Q +D+ + +N+ ++ S+L +KE +D +
Sbjct: 14 HQYQYKDILSV-FEDAFVDNFDCK-DVQDMPKSIL----SKEEIDHIIMS---------K 58
Query: 281 PEPNGYLHI--------GHAKAMFVDFGLAKERGGYCYL----RYDDTNPEAEKKEYIDH 328
+G L + FV+ L Y +L + + P + YI+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 329 IEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMN--- 385
+ + + + F + Y + R + + R+ +
Sbjct: 116 RDRL--YNDNQVF-----AKYN----------VSR---------LQPYLKLRQALLELRP 149
Query: 386 SPW-------------------RDRPIAESLKLFED----MRNGRIEEGKATLRMKQDM- 421
+ + + + + L M Q +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 422 -QND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC--IVDSIENITH----SL-C 472
Q D N+ + IK H + + S Y +C ++ +++N +L C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 473 TLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRK-LNFLVTNKYVDGWDDPC 531
+ TR L A L+ + ++ + + L+ KY+D
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEVKSLLL--KYLD------ 312
Query: 532 LMTLAGLRRRGVTSTSINAFVQG-IGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 590
L R +T N I S D L D ++ ++L ++ VL P
Sbjct: 313 -CRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 591 -------LKVVI----TNMESGTIMHLDAKRWPDAQADDA----------SAFYKVPFSN 629
++ + ++ + + + W D D S K P +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 630 VVYIEHS---DFRMKDSKDYYGLAPGKSVLLRYAFPIK-CTE--VILSDDKETILHI--- 680
+ I S + ++K +Y A +S++ Y P ++ + D+ HI
Sbjct: 425 TISI-PSIYLELKVKLENEY---ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 681 --RAEYDPSKKTKPKVFL--SFIS---CHAGICCLNVAAGSVL 716
E+ VFL F+ H A+GS+L
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW--NASGSIL 521
Score = 42.9 bits (100), Expect = 4e-04
Identities = 61/399 (15%), Positives = 101/399 (25%), Gaps = 157/399 (39%)
Query: 1 MVGVSKG-DKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNL 59
+ S E+ L LK
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY---------------------------------------- 310
Query: 60 LYTVATKYPTNALVHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV 119
L P L P L I S A + + ++ D+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NW-----KHVNCDKLTTI--- 358
Query: 120 GVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDL--FAHVRKRLPWADPKIVKQLI 175
IE ++N V E E R + L F P I
Sbjct: 359 --------IESSLN-VLEPA-----EYRKMFD----RLSVF-----------PPSAH--I 387
Query: 176 DARMYELL-GERTAADIEKLSKKKEKK---EKKEKPEKDEDKKFANDAPVQLPEEDLFPI 231
+ L+ + +D+ + K K EK+ K + +P ++ +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-----------ISIP--SIY-L 433
Query: 232 SNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYL--HI 289
E Y +H I + N + D PP + Y HI
Sbjct: 434 ELKVKLENEYALHRSI-------VDHYNIPKTFDSD---------DLIPPYLDQYFYSHI 477
Query: 290 G-HAKAM------------FVDFGLAKERGGYCYLRYDDTNPEAEK---------KEYID 327
G H K + F+DF +++ +R+D T A K Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 328 HIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHA 366
+I + +P + L ++ LI +
Sbjct: 533 YICDN------DPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 30.2 bits (67), Expect = 3.1
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 5 SKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVI---------HEAAVTDGC--- 52
+ E + LF + LD R + I ++ N + I ++ + D
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 53 ERRIGNLLYTVATKYPTNALVHRPTLLLYI 82
ER + +L K N + + T LL I
Sbjct: 542 ERLVNAIL-DFLPKIEENLICSKYTDLLRI 570
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 4e-11
Identities = 101/603 (16%), Positives = 168/603 (27%), Gaps = 226/603 (37%)
Query: 222 QLPEEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPP 281
QL E+ F P P E + E + E++ K L G V + P
Sbjct: 32 QLQEQ--F-NKILPEPTEGFAADDE----PTTPA------ELVGKFL----GYVSSLVEP 74
Query: 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDD------------TNPEAEKKEYIDH 328
G + + +F E CYL +D + KE I +
Sbjct: 75 SKVGQFDQV--LNLCLTEF----EN---CYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 329 IEEIVQWMGWEPFKITYTS------------------------DYFQELYELAVELIRRG 364
PF S DYF+EL +L
Sbjct: 126 YITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-------- 176
Query: 365 HAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424
Y + Y + L I+ TL
Sbjct: 177 --Y---------QTY-----------HVLVGDL----------IKFSAETLS-------- 196
Query: 425 NFNMYDLIAYRIKFTP-HPHAGD--KW----CIYPSYDY-AHCIVDSIENITHSLCTLEF 476
+LI + + +W P DY + S I + L
Sbjct: 197 -----ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIG--VIQL-- 246
Query: 477 ETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYV---DGWDD---- 529
A Y LG + P E T S+ LVT + D W+
Sbjct: 247 ----AHYVVTAKLLG-FTPG--ELRSYLKGATGHSQG----LVTAVAIAETDSWESFFVS 295
Query: 530 --PCLMTLA--GLR------RRGVTSTSINAFVQ-GIGI-----SRSDSLIRLDRLEYHI 573
+ L G+R + + + ++ G+ S S+ + ++++ ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDYV 353
Query: 574 REELNKTAPRTMVV----LN-PLKVVIT-NMES--GTIMHLDAKRWPDAQADDASAFYKV 625
+ N P V +N +V++ +S G + L + P D S ++
Sbjct: 354 -NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--DQS---RI 407
Query: 626 PFSN--VVYIEHSDFRMKDSKDYYGL---APGKSVLLRYAFPIKCTEVILSDDKETILHI 680
PFS + + + F L +P S LL A +++I D + +
Sbjct: 408 PFSERKLKF--SNRF----------LPVASPFHSHLLVPA-----SDLINKDLVKNNVSF 450
Query: 681 RAE------YDPS-----KKTKPKVFLSFISCHAGICCLNV---AAGSVLENRVSILHI- 725
A+ YD + + + C I L V + HI
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDC---IIRLPVKWETT-----TQFKATHIL 502
Query: 726 -FG 727
FG
Sbjct: 503 DFG 505
Score = 59.3 bits (143), Expect = 4e-09
Identities = 92/562 (16%), Positives = 160/562 (28%), Gaps = 218/562 (38%)
Query: 4 VSKGDKSEILELFLKIGLDDRTAKNTI--ANNKVTANLTAVIHEAAVT-----DGCERRI 56
V + ++ L + L + +N N+ IH A D +
Sbjct: 72 VEPSKVGQFDQV-LNLCLTE--FENCYLEGND---------IHALAAKLLQENDTTLVKT 119
Query: 57 GNLL--YTVATKYPTNALVHRPTLLLYIVSSKIKTPAQLEAA----FSFFASTGSENFEV 110
L+ Y + RP K A A A G
Sbjct: 120 KELIKNY-----ITARIMAKRPF-------DKKSNSALFRAVGEGNAQLVAIFG------ 161
Query: 111 DEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR-----YRTNVGDLFAHVRKRLPW 165
G G ++ FEE LR Y VGDL + L
Sbjct: 162 -------GQG----------NTDDYFEE-------LRDLYQTYHVLVGDLIKFSAETL-- 195
Query: 166 ADPKIVKQLIDARMYELLGERTAADIEK-LSKKKEKKEKKEKPEKDEDKKFANDAPVQLP 224
++++ +DA G +I + L E P DK + P+ P
Sbjct: 196 --SELIRTTLDAEKVFTQG----LNILEWL----------ENPSNTPDKDYLLSIPISCP 239
Query: 225 EEDLFPISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPN 284
+ ++++ ++ L T G + +
Sbjct: 240 LIGVIQLAHY--------------------VVTAKL-------LGFTPGELRSYL----K 268
Query: 285 GYLHIGHAKAMFV-----------DFGLAKER--------GGYCYLRYDDTN-PEAEKKE 324
G GH++ + F ++ + G CY Y +T+ P + ++
Sbjct: 269 GAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 325 YIDHIEEIVQWM----GWEPFK----ITYTSDYFQE-----------------------L 353
+++ E + M + + T+ + L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 354 YELAVELIRRGHA--YVD-HQTPEEIKEYREKKMNSPWRDRPIAE---SLKLFEDMRNGR 407
Y L + L R+ A +D + P + E+K+ R P+A S L
Sbjct: 387 YGLNLTL-RKAKAPSGLDQSRIP-----FSERKLKFSNRFLPVASPFHS-HLLVP----- 434
Query: 408 IEEGKATLRMKQDMQNDN--FNMYDLIAYRIKFTP--HPHAGDKWCIYPSYDYAHCIVDS 463
A+ + +D+ +N FN D+ +I P G + S + IVD
Sbjct: 435 -----ASDLINKDLVKNNVSFNAKDI---QI---PVYDTFDGSDLRVL-SGSISERIVDC 482
Query: 464 I-------ENITHSLCT--LEF 476
I E T T L+F
Sbjct: 483 IIRLPVKWETTTQFKATHILDF 504
Score = 32.3 bits (73), Expect = 0.79
Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 63/197 (31%)
Query: 451 YPSYDYAHCIVDSIENITHSLCTLEFE---------TRRASYFWLLHALGLYQPYVWEYS 501
Y + A + + +N H T F +F + + YS
Sbjct: 1636 YKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE----NYS 1689
Query: 502 RLNVSNTVMSKRKLNFL------VTNKYVDGWDD----------PCLMT-----LAGLRR 540
+ V K K + + Y + P L L+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 541 RGVTSTSINAFVQG--IG-----ISRSDSL-----IRLDRLEYHIREELNKTA-PRT--- 584
+G+ +A G +G S +D + + + + R + A PR
Sbjct: 1750 KGLIPA--DATFAGHSLGEYAALASLADVMSIESLVEV--V--FYRGMTMQVAVPRDELG 1803
Query: 585 -----MVVLNPLKVVIT 596
M+ +NP +V +
Sbjct: 1804 RSNYGMIAINPGRVAAS 1820
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 64.6 bits (158), Expect = 6e-11
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 233 NFPPPEENYKVHTEIPFSDGS-------VLICCNTKEVLDKHLEVTGGNVLTRFPPEPNG 285
NFP ++ + I GS + EV K + V RF P P G
Sbjct: 81 NFPEEKDGHIKVPGIHRGSGSGSGSMFITGAFFDILEVGPKKIRRCFELVRVRFAPSPTG 140
Query: 286 YLHIGHAK-AMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMG--WE--P 340
+LH+G A+ A+F ++ A++ GG LR +DT+ E +EY I E ++W G W+ P
Sbjct: 141 HLHVGGARTALF-NWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGP 199
Query: 341 FKITYTSDYFQ----ELY-ELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWR----DR 391
Y Q E+Y E A +L+ AY E+ + P
Sbjct: 200 DIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGH 259
Query: 392 PIAESLKL------FEDMRNGRIE 409
P+ K+ FED+ G +E
Sbjct: 260 PVTIKFKVLPGKTSFEDLLKGYME 283
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 63.7 bits (156), Expect = 9e-11
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 258 CNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAK-AMFVDFGLAKERGGYCYLRYDDT 316
+ EV K + V RF P P G+LH+G A+ A+F ++ A++ GG LR +DT
Sbjct: 9 FDILEVGPKKIRRCFELVRVRFAPSPTGHLHVGGARTALF-NWMFARKEGGKFILRIEDT 67
Query: 317 NPEAEKKEYIDHIEEIVQWMG--WE--PFKITYTSDYFQ----ELY-ELAVELIRRGHAY 367
+ E +EY I E ++W G W+ P Y Q E+Y E A +L+ AY
Sbjct: 68 DTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127
Query: 368 VDHQTPEEIKEYREKKMNSPWR----DRPIAESLKL------FEDMRNGRIE 409
E+ + P P+ K+ FED+ G +E
Sbjct: 128 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.010
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 158 HVRKRLPWA---DPKI-VKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE-KDED 212
+RK W ++ M + E+ D+E+ ++++ ++ +K K + D
Sbjct: 86 SIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 213 KKFANDAPVQLPEEDL 228
K F P+ D+
Sbjct: 143 KAFYQQ-----PDADI 153
Score = 36.3 bits (83), Expect = 0.018
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 371 QTPEEIKEYRE-------------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 417
Q PE I+++RE K M WR++ + L+ + ++ ++E+ K R+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-LEEWNQRQSEQVEKNKINNRI 140
Query: 418 KQ 419
Sbjct: 141 AD 142
Score = 29.4 bits (65), Expect = 3.2
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 185 ERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVH 244
+R + E + K +E++ K+ + E D K + ++DL EE +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQ-ELDAASKVMEQEWREKAKKDL---------EEWNQRQ 127
Query: 245 TE 246
+E
Sbjct: 128 SE 129
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.4 bits (84), Expect = 0.036
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 184 GERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEE 239
+ D + K+KK+K +K K + P +P DL+P FP +E
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD--PPSVPICDLYPNGVFPKGQE 134
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 31.8 bits (72), Expect = 0.86
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 285 GYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN--PEAEKKEYIDHIEEIVQWMGWEPFK 342
G + + + G Y Y P+A KE +D I+ V+ +G +
Sbjct: 296 GLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGID--H 353
Query: 343 ITYTSDYFQ-----------ELYELAVELIRRGHAYVDHQTPEEIK 377
+ +SD+ E+ + ELI RG+ + +I
Sbjct: 354 VGISSDFNDGGGVDGWKDVSEIRNVTAELITRGY------SDADIA 393
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 30.4 bits (68), Expect = 2.3
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 13/112 (11%)
Query: 262 EVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYL--------RY 313
+ LD + + P + + + L +
Sbjct: 72 KFLDDVEAKKPTFIFIQK--YPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLN 129
Query: 314 DDTNPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRR 363
+ K D ++ I+ G+ K I YF ++Y + +
Sbjct: 130 REATINEASKMSNDLMKYILA-FGFNEDKTFIYTDYQYFGKMYRTISLVEKA 180
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 30.2 bits (68), Expect = 2.6
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 105 SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTN-----VGDLFAHV 159
E ++ + + ++ ++IE + E+ E N + I E +G +
Sbjct: 542 DEGLAAEDAARKLNL-LLLAEDEIESIIQEIVEGNLDMISE--RGMGAMGPLMGQAMGRL 598
Query: 160 RKRLPWADPKIVKQLIDARMYELL 183
R R AD K+V +++ ++ E L
Sbjct: 599 RGR---ADGKVVNRILREKIQERL 619
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 29.9 bits (68), Expect = 2.8
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 659 YAFPIKCTEVILSDDKETILHIRAEYDPSKKTKPKVFLSF-ISCHAGIC 706
Y + I + IR YDP L+F C AGIC
Sbjct: 26 YKIEEAPSMTIF----IVLNMIRETYDPD--------LNFDFVCRAGIC 62
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 30.1 bits (68), Expect = 2.8
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 306 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 362
CY+R+ DT + ++ +++ D +E IV+ + + ++ +S + +L + +
Sbjct: 54 AQICYIRHTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLF 113
Query: 363 RGHAYVDHQTPEEIKE 378
+I E
Sbjct: 114 ALAEAELKTYSPDIVE 129
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 30.1 bits (68), Expect = 3.0
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 306 GGYCYLRYD-DT-NPEAEK-KEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIR 362
G CY+R+ DT + ++ +++ D +VQ G + + S + +EL + +
Sbjct: 57 GNLCYIRHSVDTTDAFYKEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLF 116
Query: 363 RGHAYVDHQTPEEI 376
+E+
Sbjct: 117 ALAECDLKTYSDEV 130
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 30.3 bits (68), Expect = 3.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 280 PPEPNGYLHIGHA 292
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 378 EYRE-KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422
E + KK+ + SLKL+ D + A L +K M+
Sbjct: 18 EKQALKKLQA---------SLKLYAD------DSAPA-LAIKATME 47
Score = 27.6 bits (60), Expect = 8.7
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 8/21 (38%)
Query: 208 EKDEDKK-------FAND-AP 220
EK KK +A+D AP
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 29.9 bits (67), Expect = 3.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 280 PPEPNGYLHIGHA 292
P +G+LH+GHA
Sbjct: 42 FPYLSGHLHVGHA 54
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 29.2 bits (65), Expect = 5.6
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 555 IGISRSDSLIRLDRLE-YHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAK 609
I ++ S + +D + T+PR + L+ K +T + I ++ K
Sbjct: 58 IVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 29.3 bits (66), Expect = 6.0
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEE 138
+ + ++E AF F GS E + + + + E+
Sbjct: 412 ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQME---ELESIIEQ 461
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 29.1 bits (64), Expect = 6.3
Identities = 32/211 (15%), Positives = 56/211 (26%), Gaps = 22/211 (10%)
Query: 178 RMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPP 237
G RTA I KK+ ++E KKF +D + F S
Sbjct: 87 EAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVG--FFDDSFSEAH 144
Query: 238 EENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFV 297
E K + + + E L + G ++ P
Sbjct: 145 SEFLKAASNL---RDNYRFAHTNVESLVNEYDDNGEGIILFRPSH--------------- 186
Query: 298 DFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELA 357
K KK ++I I M + + D Y++
Sbjct: 187 --LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVD 244
Query: 358 VELIRRGHAYVDHQTPEEIKEYREKKMNSPW 388
E +G Y ++ K++ + +
Sbjct: 245 YEKNAKGSNYWRNRVMMVAKKFLDAGHKLNF 275
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 29.2 bits (65), Expect = 6.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 343 ITYTSDYFQELYELA------VELIRRGHAYVDHQTPEEIKEYREKKMNSP 387
TY DY Q L ++ + + H E I +R+ S
Sbjct: 369 YTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 29.0 bits (66), Expect = 7.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 280 PPEPNGYLHIGHA 292
PP NG LH+GHA
Sbjct: 56 PPYANGNLHMGHA 68
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 28.8 bits (64), Expect = 8.2
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 105 SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTN-----VGDLFAHV 159
+ + E E G+ +S E++ + EV ++N + +G + A V
Sbjct: 554 NPSKSAREVAEEKGL-TLLSEEEVTRIIEEVIQQNIEVVKA--KGMGAMGLIMGRVMAKV 610
Query: 160 RKRLPWADPKIVKQLIDARMYELLG 184
R + AD K+V Q++ ++ E+ G
Sbjct: 611 RGK---ADGKLVSQIVRRKLQEISG 632
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate
binding protein, calcium, lactate, trap transporter,
transport protein; 1.40A {Thermus thermophilus} PDB:
2zzw_A 2zzx_A
Length = 361
Score = 28.6 bits (64), Expect = 8.7
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 594 VITNMESGTIMHLDAKRWPDAQADDASAFYKV 625
V +E G I DA + + F++V
Sbjct: 203 VYPALERGVI---DAADFVGPAVNYNLGFHQV 231
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 9.8
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 301 LAKERGGYCYL--RYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAV 358
+A G C R + +N + + KE +D IE+++ + YT+ + + + +
Sbjct: 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDH----YTNGLYSLI-QRSK 226
Query: 359 ELIRRGHAYVDHQTPEEIKEYREKK 383
V IK ++
Sbjct: 227 CGPVGSDERVKEFKQSLIKYMETQR 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,678,485
Number of extensions: 733497
Number of successful extensions: 2187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 66
Length of query: 745
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 644
Effective length of database: 3,881,772
Effective search space: 2499861168
Effective search space used: 2499861168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)