Query 004548
Match_columns 745
No_of_seqs 422 out of 2594
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 01:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301 Voltage-gated Ca2+ cha 100.0 2.2E-68 4.7E-73 640.9 33.3 474 136-699 875-1409(1592)
2 KOG2302 T-type voltage-gated C 100.0 1E-65 2.2E-70 560.8 45.0 481 139-698 1162-1692(1956)
3 KOG2302 T-type voltage-gated C 100.0 4.5E-61 9.8E-66 524.5 42.2 268 432-703 1111-1401(1956)
4 KOG2301 Voltage-gated Ca2+ cha 100.0 1.9E-59 4.1E-64 563.8 32.9 507 138-701 105-672 (1592)
5 KOG3713 Voltage-gated K+ chann 99.9 2.6E-23 5.7E-28 220.9 17.2 248 432-704 172-444 (477)
6 KOG3713 Voltage-gated K+ chann 99.9 5.8E-22 1.3E-26 210.7 19.0 192 136-334 243-441 (477)
7 PF00520 Ion_trans: Ion transp 99.9 8.6E-22 1.9E-26 196.1 13.1 198 481-686 1-200 (200)
8 PF00520 Ion_trans: Ion transp 99.9 2.6E-21 5.7E-26 192.6 13.2 183 137-319 1-200 (200)
9 KOG1545 Voltage-gated shaker-l 99.8 5.2E-21 1.1E-25 192.9 4.0 183 136-325 256-448 (507)
10 PLN03223 Polycystin cation cha 99.8 1.7E-18 3.8E-23 199.9 22.4 199 479-697 1178-1429(1634)
11 KOG1545 Voltage-gated shaker-l 99.8 3.3E-19 7.1E-24 180.0 8.3 248 430-702 169-458 (507)
12 PLN03223 Polycystin cation cha 99.8 1.6E-17 3.4E-22 192.1 22.1 192 135-329 1175-1428(1634)
13 KOG4390 Voltage-gated A-type K 99.5 2.8E-16 6E-21 160.1 -6.6 184 136-328 230-414 (632)
14 KOG3599 Ca2+-modulated nonsele 99.5 5E-13 1.1E-17 155.4 17.9 200 478-700 467-689 (798)
15 PF08016 PKD_channel: Polycyst 99.5 7.3E-13 1.6E-17 148.0 18.3 188 480-692 214-424 (425)
16 KOG4390 Voltage-gated A-type K 99.5 2.9E-16 6.3E-21 159.9 -9.0 237 433-701 166-420 (632)
17 PF08016 PKD_channel: Polycyst 99.4 1.7E-12 3.6E-17 145.2 17.0 178 141-325 219-424 (425)
18 KOG3599 Ca2+-modulated nonsele 99.3 4.2E-11 9.2E-16 139.5 21.1 183 141-330 474-686 (798)
19 TIGR00870 trp transient-recept 99.2 7.7E-10 1.7E-14 132.8 19.2 219 480-702 392-627 (743)
20 KOG1419 Voltage-gated K+ chann 99.1 8.1E-10 1.8E-14 118.7 11.5 241 433-701 76-333 (654)
21 TIGR00870 trp transient-recept 99.0 2.3E-08 5E-13 120.1 23.6 190 139-330 395-622 (743)
22 KOG1419 Voltage-gated K+ chann 98.9 1.9E-08 4.1E-13 108.3 14.9 198 135-339 127-338 (654)
23 KOG3609 Receptor-activated Ca2 98.6 7.2E-07 1.6E-11 101.6 14.9 214 485-702 392-623 (822)
24 KOG3609 Receptor-activated Ca2 98.3 3.8E-05 8.2E-10 87.9 18.7 195 138-332 386-620 (822)
25 PLN03192 Voltage-dependent pot 98.2 6.5E-05 1.4E-09 91.3 20.5 74 446-522 63-151 (823)
26 PLN03192 Voltage-dependent pot 98.2 3.5E-05 7.5E-10 93.6 17.0 160 137-301 96-285 (823)
27 KOG0510 Ankyrin repeat protein 97.9 0.00055 1.2E-08 78.0 17.5 165 158-329 587-763 (929)
28 KOG0510 Ankyrin repeat protein 97.3 0.0039 8.4E-08 71.3 14.1 170 503-697 588-764 (929)
29 KOG3614 Ca2+/Mg2+-permeable ca 97.2 0.0065 1.4E-07 73.2 15.8 243 433-701 779-1053(1381)
30 KOG3614 Ca2+/Mg2+-permeable ca 97.2 0.046 1E-06 66.2 22.2 182 145-329 834-1048(1381)
31 KOG0498 K+-channel ERG and rel 97.1 0.019 4.1E-07 67.0 17.3 232 446-692 79-348 (727)
32 KOG3676 Ca2+-permeable cation 97.0 0.04 8.7E-07 63.6 19.3 118 576-702 539-659 (782)
33 KOG0498 K+-channel ERG and rel 97.0 0.035 7.7E-07 64.8 18.3 145 136-285 120-314 (727)
34 KOG3733 Mucolipidin and relate 96.9 0.0044 9.5E-08 65.6 9.3 126 550-695 384-512 (566)
35 KOG3533 Inositol 1,4,5-trispho 96.5 0.2 4.3E-06 60.1 19.3 146 557-702 2399-2581(2706)
36 KOG3676 Ca2+-permeable cation 96.4 0.42 9.1E-06 55.5 21.3 99 227-329 539-653 (782)
37 KOG3533 Inositol 1,4,5-trispho 96.3 0.096 2.1E-06 62.6 15.9 51 205-255 2396-2446(2706)
38 PRK10537 voltage-gated potassi 95.9 0.076 1.7E-06 58.5 12.2 91 195-294 106-196 (393)
39 KOG3733 Mucolipidin and relate 95.8 0.12 2.7E-06 55.1 12.4 113 207-328 390-512 (566)
40 KOG1420 Ca2+-activated K+ chan 95.3 0.026 5.6E-07 61.9 5.6 138 136-286 165-309 (1103)
41 PF13499 EF-hand_7: EF-hand do 93.8 0.057 1.2E-06 43.0 3.0 64 342-406 2-65 (66)
42 cd00213 S-100 S-100: S-100 dom 93.0 0.81 1.8E-05 38.8 9.2 73 338-411 6-81 (88)
43 cd05022 S-100A13 S-100A13: S-1 92.5 0.51 1.1E-05 40.3 7.1 67 340-411 8-77 (89)
44 PRK10537 voltage-gated potassi 92.3 3.2 7E-05 45.8 14.9 100 546-676 108-208 (393)
45 KOG1420 Ca2+-activated K+ chan 91.6 0.098 2.1E-06 57.6 2.0 47 478-524 163-210 (1103)
46 smart00027 EH Eps15 homology d 91.4 1.4 3.1E-05 38.0 8.8 68 339-413 9-76 (96)
47 PF07885 Ion_trans_2: Ion chan 91.0 3.4 7.3E-05 34.2 10.4 76 239-324 3-78 (79)
48 cd05027 S-100B S-100B: S-100B 90.2 1.4 3.1E-05 37.5 7.5 69 341-410 9-80 (88)
49 COG5126 FRQ1 Ca2+-binding prot 89.2 1.1 2.4E-05 42.5 6.6 64 339-407 91-154 (160)
50 cd05026 S-100Z S-100Z: S-100Z 88.8 3 6.5E-05 35.9 8.6 70 341-410 11-82 (93)
51 cd05031 S-100A10_like S-100A10 88.7 2.4 5.3E-05 36.4 8.0 71 340-411 8-81 (94)
52 cd05025 S-100A1 S-100A1: S-100 88.6 3.4 7.5E-05 35.3 8.9 70 340-410 9-81 (92)
53 cd00052 EH Eps15 homology doma 88.5 2.3 4.9E-05 33.5 7.3 62 343-411 2-63 (67)
54 KOG0501 K+-channel KCNQ [Inorg 86.3 4.5 9.9E-05 45.3 9.9 74 445-520 218-305 (971)
55 KOG0500 Cyclic nucleotide-gate 86.1 13 0.00029 41.2 13.3 105 136-253 32-149 (536)
56 cd05023 S-100A11 S-100A11: S-1 85.4 5.9 0.00013 33.8 8.4 70 341-411 10-82 (89)
57 KOG0027 Calmodulin and related 84.5 3.8 8.3E-05 38.6 7.6 64 339-407 84-147 (151)
58 cd00051 EFh EF-hand, calcium b 84.1 3.6 7.8E-05 31.0 6.2 60 342-406 2-61 (63)
59 KOG0499 Cyclic nucleotide-gate 84.0 51 0.0011 37.6 16.6 164 136-322 264-454 (815)
60 KOG0027 Calmodulin and related 83.8 4.4 9.5E-05 38.2 7.7 66 340-410 8-73 (151)
61 KOG0028 Ca2+-binding protein ( 82.8 7.1 0.00015 36.7 8.2 63 340-407 106-168 (172)
62 PTZ00183 centrin; Provisional 81.9 5.3 0.00011 37.5 7.6 63 340-407 90-152 (158)
63 KOG2243 Ca2+ release channel ( 79.4 3.4 7.4E-05 50.1 5.9 141 551-702 4790-4934(5019)
64 PTZ00184 calmodulin; Provision 78.1 7.6 0.00016 35.8 7.2 62 341-407 85-146 (149)
65 COG5126 FRQ1 Ca2+-binding prot 77.6 11 0.00025 35.8 8.0 66 340-411 20-85 (160)
66 cd00252 SPARC_EC SPARC_EC; ext 76.0 14 0.0003 33.3 7.7 63 336-407 44-106 (116)
67 KOG4404 Tandem pore domain K+ 75.7 16 0.00035 38.4 9.0 78 229-311 155-236 (350)
68 PTZ00184 calmodulin; Provision 75.1 14 0.00031 34.0 8.1 64 340-408 11-74 (149)
69 KOG0044 Ca2+ sensor (EF-Hand s 75.0 6.5 0.00014 38.7 5.8 68 342-409 102-175 (193)
70 PTZ00183 centrin; Provisional 73.5 16 0.00035 34.1 8.2 64 340-408 17-80 (158)
71 cd05024 S-100A10 S-100A10: A s 73.3 17 0.00037 31.1 7.2 55 355-410 22-77 (91)
72 cd05030 calgranulins Calgranul 72.5 28 0.00061 29.4 8.5 58 353-410 23-80 (88)
73 KOG3684 Ca2+-activated K+ chan 72.2 64 0.0014 35.7 12.8 99 220-325 244-342 (489)
74 PF00036 EF-hand_1: EF hand; 71.5 3.3 7.2E-05 27.2 2.0 26 383-408 2-27 (29)
75 PF14788 EF-hand_10: EF hand; 70.2 10 0.00022 28.6 4.5 35 376-410 16-50 (51)
76 PF13833 EF-hand_8: EF-hand do 69.3 10 0.00022 28.5 4.7 50 354-407 2-51 (54)
77 KOG0034 Ca2+/calmodulin-depend 67.1 13 0.00028 36.5 5.9 66 340-407 104-173 (187)
78 cd05029 S-100A6 S-100A6: S-100 66.3 50 0.0011 28.0 8.7 67 342-410 12-80 (88)
79 PF12763 EF-hand_4: Cytoskelet 65.7 25 0.00054 31.0 6.9 64 339-410 9-72 (104)
80 KOG0036 Predicted mitochondria 65.2 25 0.00055 38.2 8.0 63 338-405 80-142 (463)
81 KOG0500 Cyclic nucleotide-gate 64.7 1.5E+02 0.0032 33.3 13.8 66 455-520 7-85 (536)
82 KOG0031 Myosin regulatory ligh 64.7 29 0.00062 32.6 7.2 70 340-409 32-129 (171)
83 KOG0499 Cyclic nucleotide-gate 59.3 2.1E+02 0.0045 33.0 13.8 45 476-520 260-318 (815)
84 KOG0501 K+-channel KCNQ [Inorg 56.8 1.5E+02 0.0032 33.9 12.2 44 268-315 426-469 (971)
85 KOG0377 Protein serine/threoni 56.0 76 0.0016 34.9 9.5 74 336-410 543-616 (631)
86 PF01007 IRK: Inward rectifier 56.0 1E+02 0.0022 33.3 10.9 62 261-325 80-141 (336)
87 PF06512 Na_trans_assoc: Sodiu 55.3 2.7 5.9E-05 43.1 -1.2 25 431-455 215-239 (239)
88 PF00036 EF-hand_1: EF hand; 53.2 16 0.00035 23.9 2.6 27 342-368 2-28 (29)
89 KOG0036 Predicted mitochondria 50.4 58 0.0013 35.6 7.6 66 336-405 10-75 (463)
90 KOG2243 Ca2+ release channel ( 49.3 23 0.0005 43.6 4.8 122 208-329 4796-4928(5019)
91 PRK12309 transaldolase/EF-hand 48.3 96 0.0021 34.3 9.3 53 339-409 333-385 (391)
92 PLN02964 phosphatidylserine de 48.2 55 0.0012 38.5 7.8 64 341-409 180-243 (644)
93 PF13405 EF-hand_6: EF-hand do 45.4 18 0.00039 23.8 2.0 26 383-408 2-27 (31)
94 PF13202 EF-hand_5: EF hand; P 43.3 24 0.00052 22.2 2.2 23 342-364 1-23 (25)
95 COG1377 FlhB Flagellar biosynt 42.3 2.5E+02 0.0054 30.6 10.9 17 590-606 99-115 (363)
96 PF15086 UPF0542: Uncharacteri 41.4 1.9E+02 0.0042 23.5 7.9 42 281-328 6-47 (74)
97 PF07885 Ion_trans_2: Ion chan 40.4 1.7E+02 0.0036 23.8 7.7 55 629-691 23-78 (79)
98 PF14658 EF-hand_9: EF-hand do 39.3 88 0.0019 25.1 5.3 58 345-406 3-61 (66)
99 KOG0377 Protein serine/threoni 36.8 1.7E+02 0.0037 32.3 8.6 78 336-413 460-579 (631)
100 PF11044 TMEMspv1-c74-12: Plec 35.9 71 0.0015 23.1 3.8 31 671-701 7-37 (49)
101 TIGR02921 PEP_integral PEP-CTE 35.4 7.7E+02 0.017 28.6 19.0 22 84-105 13-37 (952)
102 PF01007 IRK: Inward rectifier 33.2 1.8E+02 0.0038 31.5 8.3 65 626-695 80-144 (336)
103 PF10669 Phage_Gp23: Protein g 30.9 1.1E+02 0.0024 26.1 4.8 30 663-692 14-43 (121)
104 COG5249 RER1 Golgi protein inv 30.6 84 0.0018 29.0 4.4 25 675-699 65-89 (180)
105 KOG0046 Ca2+-binding actin-bun 30.0 1.6E+02 0.0035 33.3 7.2 67 339-408 18-84 (627)
106 KOG0041 Predicted Ca2+-binding 28.0 2.6E+02 0.0056 27.6 7.4 62 342-408 101-162 (244)
107 KOG0031 Myosin regulatory ligh 27.7 2.6E+02 0.0056 26.5 7.1 62 340-406 101-162 (171)
108 KOG0044 Ca2+ sensor (EF-Hand s 26.9 2.4E+02 0.0052 27.9 7.3 68 342-414 66-133 (193)
109 KOG0028 Ca2+-binding protein ( 23.4 3.3E+02 0.0071 26.0 7.0 66 338-408 31-96 (172)
110 TIGR01404 FlhB_rel_III type II 22.6 5.3E+02 0.011 28.0 9.7 18 668-685 181-198 (342)
111 PRK08156 type III secretion sy 21.7 9.3E+02 0.02 26.4 11.3 15 592-606 89-103 (361)
112 PLN02964 phosphatidylserine de 20.8 2.6E+02 0.0056 33.1 7.2 64 339-410 142-208 (644)
No 1
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-68 Score=640.91 Aligned_cols=474 Identities=24% Similarity=0.415 Sum_probs=408.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccH
Q 004548 136 LVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~~~ 215 (745)
-+.|.+|+.+|++|+++|+++.|...|++|.||++|++++++++++++.... .....+.+|.+|+|||||.++.++
T Consensus 875 ~y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~ 950 (1592)
T KOG2301|consen 875 EYADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFP 950 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcc
Confidence 3469999999999999999999998899999999999999999999998865 123788999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------------------------cccc
Q 004548 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-----------------------------------VQGN 260 (745)
Q Consensus 216 ~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~-----------------------------------~~~~ 260 (745)
++|.++.++.+++|+|++++++.++++++||++|+++|+|. .+.+
T Consensus 951 ~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~ 1030 (1592)
T KOG2301|consen 951 GMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRK 1030 (1592)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccc
Confidence 99999999999999999999999999999999999999853 1245
Q ss_pred ccccchHHHHHHHHHHHhcCCChhhhHH-----------hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 261 MVFTSFGTTLYQMFVLFTTSNNPDVWIP-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (745)
Q Consensus 261 ~~F~~~~~s~~~lf~~~t~~~w~dv~~~-----------~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~ 329 (745)
.||||++++++++|+..|.+||+|+|+. .+..+.+.++||++|++++.|+.+|+|+|||++||+++.++
T Consensus 1031 ~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~ 1110 (1592)
T KOG2301|consen 1031 FNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGK 1110 (1592)
T ss_pred cccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchh
Confidence 6799999999999999999999999864 44566788999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 004548 330 QVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (745)
Q Consensus 330 ~~~~~~~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~ 409 (745)
+..+ +.+.+|...+ ...++..
T Consensus 1111 ~~~~----------------------~~~~eq~~~~-~~~~~l~------------------------------------ 1131 (1592)
T KOG2301|consen 1111 AGGT----------------------FMTEEQKKRL-NAAKKLG------------------------------------ 1131 (1592)
T ss_pred hhhh----------------------hhhHHHHHHH-HHHHHhc------------------------------------
Confidence 6552 1111111111 0000000
Q ss_pred HHhhhcccCCccccccCCcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 004548 410 IALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWI 489 (745)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~i 489 (745)
.++.+++.| ...++.+.+++.++.++.|++.+..++++|.+.++++++. ++......+.+++.+|+.+
T Consensus 1132 --sk~~~r~ip--------r~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~--qs~~~~~~l~~in~vft~~ 1199 (1592)
T KOG2301|consen 1132 --SKPPQRPIP--------RPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYD--QSDTYTAILTILNAVFIVL 1199 (1592)
T ss_pred --CCCCCCCCC--------CCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHH
Confidence 011111111 1235678999999999999999999999999999999873 4445667889999999999
Q ss_pred HHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004548 490 YVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGF 569 (745)
Q Consensus 490 f~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l 569 (745)
|++|+++|++|.|++.||+++||+||++++++++++.+++..... +.++....++.|++|+.|++|+++..+++|.+
T Consensus 1200 Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~L 1276 (1592)
T KOG2301|consen 1200 FTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTL 1276 (1592)
T ss_pred HHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHH
Confidence 999999999999999999999999999999999999988876643 22345678999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHH
Q 004548 570 VATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV 649 (745)
Q Consensus 570 ~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~ 649 (745)
..|++.|+|++.++++++++++++||++||++||....+ +.+ .++||.|+++|++.||+++|+|||++
T Consensus 1277 L~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~----~~~NF~tf~~a~i~LFr~~Tge~W~~ 1344 (1592)
T KOG2301|consen 1277 LLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIN----DHNNFRTFPNSMVVLFRCATGEGWND 1344 (1592)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccC----CCcccccchhheeeeeehhhhhhHHH
Confidence 999999999999999999999999999999999998875 111 15899999999999999999999999
Q ss_pred HHHHHHh--------------hhC-CcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004548 650 WMQSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 699 (745)
Q Consensus 650 im~~~~~--------------~~~-~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~ 699 (745)
+|.+++. .|| ..++.+||++|++++.++++|||||+|+|||+..+++.++
T Consensus 1345 im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1345 IMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred HHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 9999765 477 5889999999999999999999999999999999988774
No 2
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-65 Score=560.84 Aligned_cols=481 Identities=22% Similarity=0.333 Sum_probs=404.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCc----hhhhhccccceehhhHHHHHHHHHHHHhhcCCccc---ccchhhhhhhhHHHHHh
Q 004548 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF---NFLPLRIAPYIRVVFFI 211 (745)
Q Consensus 139 e~~~~~~f~~E~~lk~~~~g~----~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~---~~~~lr~~r~lR~lrli 211 (745)
+++|+.+|++|+.+|+++.|+ .+|+++.||.+|++++.++++|++++.... .+.. .++++|++|.|||+|.+
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa-~g~kILgVlrvLRlLRtlRpLRvi 1240 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASA-GGAKILGVLRVLRLLRTLRPLRVI 1240 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHH
Confidence 699999999999999999885 789999999999999999999999987742 2222 46678888889999999
Q ss_pred hccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------------------------ccccccccch
Q 004548 212 LNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-------------------------VQGNMVFTSF 266 (745)
Q Consensus 212 ~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~-------------------------~~~~~~F~~~ 266 (745)
.+.++++.++.++..|+|.|+++.++++.|+++|+++|+|+|.|. ....+||||.
T Consensus 1241 Sra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnl 1320 (1956)
T KOG2302|consen 1241 SRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNL 1320 (1956)
T ss_pred hhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchH
Confidence 999999999999999999999999999999999999999999852 0125789999
Q ss_pred HHHHHHHHHHHhcCCChhhhH-----------HhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 267 GTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 335 (745)
Q Consensus 267 ~~s~~~lf~~~t~~~w~dv~~-----------~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~~~~~~ 335 (745)
++|+++||++.|-+||.++|| |..+.++|..+|||+|.+|..|+++|+|++|+++||.+-.+++.+++.
T Consensus 1321 gqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeA 1400 (1956)
T KOG2302|consen 1321 GQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA 1400 (1956)
T ss_pred HHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 677999999999999999999999999999999999998877666655
Q ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhhhc
Q 004548 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 415 (745)
Q Consensus 336 ~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~~~~~ 415 (745)
++|+++.- +.+.+ +.+
T Consensus 1401 rRreEKrL-----------------------rrlek-----------------------------------------krR 1416 (1956)
T KOG2302|consen 1401 RRREEKRL-----------------------RRLEK-----------------------------------------KRR 1416 (1956)
T ss_pred HHHHHHHH-----------------------HHHHH-----------------------------------------HHH
Confidence 54433211 11100 000
Q ss_pred ccCCccccccCCcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 004548 416 KEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMA 495 (745)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~ 495 (745)
+..++++... .+..|+.++....+.+-+.++++++.+|++++..+.+ .++...++.+.+-++.|+++|+.|.+
T Consensus 1417 ~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~EaV 1489 (1956)
T KOG2302|consen 1417 AAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEAV 1489 (1956)
T ss_pred hccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHHH
Confidence 0111111000 2467899999999999999999999999999999886 34556778899999999999999999
Q ss_pred HHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004548 496 LKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLT 575 (745)
Q Consensus 496 lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~ 575 (745)
+|.++.|.++||++.||.+|+.++++++.+..+.-...+ .+.-.++.++|++|++|+.|++|+++...++|.++.|+++
T Consensus 1490 ~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvvq 1568 (1956)
T KOG2302|consen 1490 LKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQ 1568 (1956)
T ss_pred HHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776543322 1223467899999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHHHHHHHH
Q 004548 576 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 655 (745)
Q Consensus 576 ~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~ 655 (745)
++|.+.++.++..+++||||.+|+++||... ||++.++.+... +..|.||+.|++|||+++||+||+.||.+..
T Consensus 1569 alpqvgnlgllfmllffiyaalgvelfg~le--c~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdtl 1642 (1956)
T KOG2302|consen 1569 ALPQVGNLGLLFMLLFFIYAALGVELFGKLE--CNEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDTL 1642 (1956)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhhH
Confidence 9999999999999999999999999999875 444333333333 4789999999999999999999999999987
Q ss_pred hhhC-------CcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 004548 656 ELTG-------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELES 698 (745)
Q Consensus 656 ~~~~-------~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~ 698 (745)
..|. ...+.+||++|.+...++++|+.||+++....+.-++.+
T Consensus 1643 rdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea~ 1692 (1956)
T KOG2302|consen 1643 RDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQ 1692 (1956)
T ss_pred hhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhh
Confidence 7664 357899999999999999999999999988765544333
No 3
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-61 Score=524.49 Aligned_cols=268 Identities=24% Similarity=0.386 Sum_probs=233.5
Q ss_pred cHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHH-HHHHHHHHHHHHHHHHHHHHhhccc----hhh
Q 004548 432 SPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSV-WQEVEFVFGWIYVLEMALKIYSYGF----ENY 506 (745)
Q Consensus 432 ~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~-~~~ie~~f~~if~iE~~lKi~a~G~----~~y 506 (745)
+++|..|++++.|+.|+.++.++|++|++.++++++...+. +.+.. +..-+++|+.||++|+.+|++|+|+ .+|
T Consensus 1111 ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~-s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aY 1189 (1956)
T KOG2302|consen 1111 NRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEG-STERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAY 1189 (1956)
T ss_pred cHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccC-cceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHH
Confidence 67899999999999999999999999999999998754333 33333 3445699999999999999999996 799
Q ss_pred hcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 004548 507 WRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGT 586 (745)
Q Consensus 507 ~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~l 586 (745)
+++.||.+|++++.+++++.++...+..+.. -..++|++|++|.+|++|.+.+.++++.++.|+..|++.+.+++++
T Consensus 1190 l~ssWN~LDgflv~vsviDilvs~asa~g~k---ILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvli 1266 (1956)
T KOG2302|consen 1190 LRSSWNVLDGFLVAVSVIDILVSQASAGGAK---ILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLI 1266 (1956)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999988877655433 3467888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCc-----CCcccccccc----ccccCChhhHHHHHHHHhhccCHHHHHHHHHhh
Q 004548 587 IFCVQCIYCSLGVQIFGGIVNAGNAKLE-----ETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL 657 (745)
Q Consensus 587 l~~~~~ifAi~G~~lF~g~~~~~~~~~~-----~~~~~~~~y~----~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~ 657 (745)
++.++++|+++|+|||+|+.+.|..... .++|....|. ..||+|.++|+++||.+.+-+||..||++..+.
T Consensus 1267 ccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDglda 1346 (1956)
T KOG2302|consen 1267 CCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDA 1346 (1956)
T ss_pred HHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhh
Confidence 9999999999999999999999865432 3455555665 589999999999999999999999999987665
Q ss_pred h---------CCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 004548 658 T---------GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCE 703 (745)
Q Consensus 658 ~---------~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~~ 703 (745)
. +++|..+|||+|++|..++++|+||++++|||.+..+..++++..
T Consensus 1347 vavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeAr 1401 (1956)
T KOG2302|consen 1347 VAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEAR 1401 (1956)
T ss_pred ceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 368999999999999999999999999999999988887777653
No 4
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-59 Score=563.81 Aligned_cols=507 Identities=21% Similarity=0.343 Sum_probs=400.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc----hhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhc
Q 004548 138 YEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 213 (745)
Q Consensus 138 ~e~~~~~~f~~E~~lk~~~~g~----~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~ 213 (745)
.|+.++.+|+.|.++|+.+.|. ..|+||+||++|++++++.+++.++... .++.+|.+|++|++|++..
T Consensus 105 ~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~-------~~~~lR~frvlr~lk~vs~ 177 (1592)
T KOG2301|consen 105 AEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLY-------NIRALRTFRVLRALKLVSG 177 (1592)
T ss_pred cceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhcccc-------chhhhccccccchhhhccC
Confidence 4999999999999999999986 6799999999999999999998776633 5889999999999999999
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------------------------------------
Q 004548 214 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT------------------------------------- 256 (745)
Q Consensus 214 ~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~------------------------------------- 256 (745)
.++++..+.++.++..++..+.++.++++.+||++|.++|.|.
T Consensus 178 ~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 257 (1592)
T KOG2301|consen 178 IPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGN 257 (1592)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCC
Confidence 9999999999999999999999999999999999999999531
Q ss_pred -----------ccccccccchHHHHHHHHHHHhcCCChhhhHHhhh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 257 -----------VQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYK-ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 324 (745)
Q Consensus 257 -----------~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~-~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~ 324 (745)
+.|.++|||++.|++++|+++|+|||+|++|+..+ .+.|+.+||+.++++|+|+++|+++||+..+|.
T Consensus 258 ~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~ 337 (1592)
T KOG2301|consen 258 NYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFA 337 (1592)
T ss_pred ccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHH
Confidence 23567899999999999999999999999998774 447899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhH
Q 004548 325 SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 404 (745)
Q Consensus 325 ~~~~~~~~~~~~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~ 404 (745)
++.++...+.+.++.+..+ +.+.+. ++..++..+.. ......+.++......+...+. ....++..
T Consensus 338 e~r~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 403 (1592)
T KOG2301|consen 338 EERVAFEEEWQFKEPRFQE-AFEELL---EKYEDGIFLAE---ADGSVESGPKSKLFSVDSLEDV-------NSRVELLS 403 (1592)
T ss_pred HHHHHHHhhhhhhchHHHH-HHHHHH---HHHHHHHHHHH---Hhhhhccccchhhhhhhhhhhh-------hhhhhhhh
Confidence 9887765554433322221 111111 11111111111 1110000011000000000000 00000000
Q ss_pred HHHHHHHhhhcccCCccccccCC--------cccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 004548 405 DLCNAIALRFQKEDVPSCFENLP--------SIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQ 476 (745)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~ 476 (745)
+. . +.+++++.+.. +.++..+++.|+.++.++.+.+++.+++++|.++++.+++.. .....
T Consensus 404 ~~-------~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~~--~~~~~ 472 (1592)
T KOG2301|consen 404 AV-------S--YKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYEM--TKARN 472 (1592)
T ss_pred hh-------c--ccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeCC--cHHHH
Confidence 00 0 12222222222 233567889999999999999999999999999999988743 34456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHH
Q 004548 477 SVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRL 556 (745)
Q Consensus 477 ~~~~~ie~~f~~if~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~ 556 (745)
..+.+.+.+|+++|+.|+.+|++++|++.||+++||+||.++++..++... ..+...+.++|++|++|+
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~-----------~~~~~g~svLr~frllRI 541 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL-----------LKNVYGLSVLRSFRLLRI 541 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc-----------ccchHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999998884444332 123456789999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHH
Q 004548 557 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV 636 (745)
Q Consensus 557 lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~ 636 (745)
+|+.+.++.++.+++.+.++++++++++++++++.++||++|||+|||....| ... ..||+|||+|++
T Consensus 542 fkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~-----------~~~~~~fp~sfl 609 (1592)
T KOG2301|consen 542 FKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI-----------HWHFTDFPHSFL 609 (1592)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC-----------ccchhhCHHHHH
Confidence 99999999999999999999999999999999999999999999999998764 211 159999999999
Q ss_pred HHHHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 004548 637 TLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 701 (745)
Q Consensus 637 tLf~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~ 701 (745)
++|+ .|+|+|.++|++++..+|.++..+||+.++++++++++|+|+|++++||...- ..+.++
T Consensus 610 ~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e-l~~~e~ 672 (1592)
T KOG2301|consen 610 SVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE-LKKPEQ 672 (1592)
T ss_pred HHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh-cCChhh
Confidence 9999 78999999999999999889999999999999999999999999999998776 444444
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.6e-23 Score=220.85 Aligned_cols=248 Identities=17% Similarity=0.229 Sum_probs=198.7
Q ss_pred cHHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccchh----------------hHHHHHHHHHHHH
Q 004548 432 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESSL----------------QSVWQEVEFVFGW 488 (745)
Q Consensus 432 ~~~r~~~~~iv~~~~-------f~~~i~~iilln~i~l~~~~~~~~~~~~~----------------~~~~~~ie~~f~~ 488 (745)
.++|++++++++.|. |..+..++++++++.+|+.|.++.+.... +..+.++|.+|++
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 448899999998765 88888999999999999999766543222 2358999999999
Q ss_pred HHHHHHHHHHhhc-cchhhhcccccchhhHHHHHHHHHHHHhhcCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHHHhH
Q 004548 489 IYVLEMALKIYSY-GFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFL-SNGEWIRYLLLARMLRLIRLLMHVQQY 566 (745)
Q Consensus 489 if~iE~~lKi~a~-G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~-~~~~~lr~l~~~RvlR~lrl~~~~~~l 566 (745)
+|++|+++|++.. ...+|++++.|++|++.++.-++...+......+.... ..+.++|++|++|++|++||.|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999954 55799999999999999999999888775553222222 234689999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccC
Q 004548 567 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 646 (745)
Q Consensus 567 r~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~ 646 (745)
|.+..|+.+|.+.+.-+ .+|-++|+.+|+...|..+.+.+ ..+|.|+|.++|+....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglL--------llfL~~GI~iFStlvY~~Ek~~~----------~~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLL--------LLFLAVGIVIFSTLVYFAEKDEP----------DTKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhcCC----------CCCCccccchhheeeEEEeeec
Confidence 99999999999997533 34455677777777776433222 2469999999987665555555
Q ss_pred HHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhh
Q 004548 647 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE 704 (745)
Q Consensus 647 W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~~~ 704 (745)
|.|..+.++.+....+-.++++++++.|+|.+|++||.+.|++.+++++..
T Consensus 394 -------YGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 394 -------YGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred -------ccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 555566678888899999999999999999999999999999988877643
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.8e-22 Score=210.71 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc-hhhhhccccceehhhHHHHHHHHHHHHhhc------CCcccccchhhhhhhhHHH
Q 004548 136 LVYEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVV 208 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~~g~-~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~------~~~~~~~~~lr~~r~lR~l 208 (745)
.++|.+|+++|++|.++|++..+. ..|+|++.|++|++.++...+++.+..... ...+..++++|++|++|++
T Consensus 243 ~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~ 322 (477)
T KOG3713|consen 243 TYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIF 322 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHH
Confidence 457999999999999999988776 469999999999999999999998886542 0111356788888888889
Q ss_pred HHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhHH
Q 004548 209 FFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIP 288 (745)
Q Consensus 209 rli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~ 288 (745)
||-+++.+||.+..++++|.++++.+++++..-+.+|| .+..|.+..++.++|.|||.++||..+.|||.||+|+ +|
T Consensus 323 KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFS--tlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm-~P 399 (477)
T KOG3713|consen 323 KLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFS--TLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDM-VP 399 (477)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCCCCCCccccchhheeeEEEeeecccCc-cc
Confidence 99999999999999999999999999999999999999 5555666666777899999999999999999999995 88
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 289 AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM 334 (745)
Q Consensus 289 ~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~~~~~ 334 (745)
....++..+ +-.++++.+++.|++.+|++||.+...++++++
T Consensus 400 ~T~~Gklva----s~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 400 VTVLGKLVA----SLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred cccchHHHH----HHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 888887655 556678888999999999999998877655443
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=8.6e-22 Score=196.10 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc--hhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 004548 481 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 558 (745)
Q Consensus 481 ~ie~~f~~if~iE~~lKi~a~G~--~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lr 558 (745)
++|.++.++|++|.++|+++.|+ ++|++++||++|+++++...+..+........ .....++.+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 47899999999999999999998 89999999999999988776655443222110 013568889999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHH
Q 004548 559 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 638 (745)
Q Consensus 559 l~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tL 638 (745)
+++..+.++.+..++.++.+.+..++.+++++++.||++|+++|++....++.... +..++.....+|++++.|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTW--DSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------S--S----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheeccccccccccccc--cccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999876543211 1112223357999999999999
Q ss_pred HHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHH
Q 004548 639 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 686 (745)
Q Consensus 639 f~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi 686 (745)
++++|++||+++++..+ ..++.++.+||++++++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998766 344578899999999999999999999986
No 8
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.86 E-value=2.6e-21 Score=192.60 Aligned_cols=183 Identities=21% Similarity=0.342 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc--hhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhcc
Q 004548 137 VYEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (745)
Q Consensus 137 ~~e~~~~~~f~~E~~lk~~~~g~--~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~~ 214 (745)
++|.+|.++|++|+++|+.+.|+ +.|++++||++|++++++++++.+.............+..|++|.+|++|+++..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccc
Confidence 36999999999999999999998 7899999999999999998887766543210001246788999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------------cccccccchHHHHHHHHHHHhcC
Q 004548 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------QGNMVFTSFGTTLYQMFVLFTTS 280 (745)
Q Consensus 215 ~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~--------------~~~~~F~~~~~s~~~lf~~~t~~ 280 (745)
+.++....++.++.+.+..++++++++++.||++|+++|++.. .+..+|++++.|++++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999999999999999999753 23567999999999999999999
Q ss_pred CChhhhHHhh-hcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 281 NNPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVV 319 (745)
Q Consensus 281 ~w~dv~~~~~-~~~~~~~ifFi~~~~l~~~~~lnl~iaVi 319 (745)
||+|++.+.+ ..+....+||++|+++++++++|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 161 GWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999987765 56667789999999999999999999986
No 9
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5.2e-21 Score=192.87 Aligned_cols=183 Identities=11% Similarity=0.108 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchh-hhhccccceehhhHHHHHHHHHHHHhhcCCccc---------ccchhhhhhhh
Q 004548 136 LVYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF---------NFLPLRIAPYI 205 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~~g~~~-y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~---------~~~~lr~~r~l 205 (745)
+++|..|+++|++|+++|..+++.|+ |+||..|++|++.++..++.+.......++++. .++++|+.|++
T Consensus 256 FiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVF 335 (507)
T KOG1545|consen 256 FIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVF 335 (507)
T ss_pred HhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHh
Confidence 78899999999999999999999865 999999999999999999999988775432221 24566667777
Q ss_pred HHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhh
Q 004548 206 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDV 285 (745)
Q Consensus 206 R~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv 285 (745)
|+++|.+++++++.+.++++.|+++++-+++++++-+++|| ....|.+.+++..+|.++++|+||..+.|||.||+|
T Consensus 336 RIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs--SavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGD- 412 (507)
T KOG1545|consen 336 RIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS--SAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGD- 412 (507)
T ss_pred hheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ceeeeeecCCCccCCCcCcccceEEEEEEEeecccc-
Confidence 77777789999999999999999999988888888888887 556688888889999999999999999999999999
Q ss_pred hHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 286 WIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (745)
Q Consensus 286 ~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~ 325 (745)
|.|..-.++... +..-+.+.+-+.|.+.||+.||+-
T Consensus 413 m~P~TvgGKIVG----slCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 413 MVPVTVGGKIVG----SLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred ceecccCceehh----hHHhhhhheEecccccEEEecccc
Confidence 589888887654 445566777889999999999974
No 10
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.81 E-value=1.7e-18 Score=199.91 Aligned_cols=199 Identities=19% Similarity=0.222 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-----chhhhcccccchhhHHHHHHHHHHHHhhcC---------------------
Q 004548 479 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 532 (745)
Q Consensus 479 ~~~ie~~f~~if~iE~~lKi~a~G-----~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~--------------------- 532 (745)
++++-.+|.++|+.+-+.++...+ +++||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 456666777788888888887543 479999999999999998887766542110
Q ss_pred ----------CCCc----cccch-------hh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 004548 533 ----------PNGQ----TFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 587 (745)
Q Consensus 533 ----------~~~~----~~~~~-------~~----~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll 587 (745)
++.. ..+.+ .. +.-++-+++++|++|+++.+++++.+..|+..+.|.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 11234557889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHHHHHHHHhh--hCCcceee
Q 004548 588 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL--TGTAWTLA 665 (745)
Q Consensus 588 ~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~--~~~~~~~~ 665 (745)
+++++.||++|..+||... .+|.||..|+.|||++++|+.+ .++++.... ....++++
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhhcccchHHHH
Confidence 9999999999999999863 3799999999999999997644 334333322 23467999
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004548 666 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 697 (745)
Q Consensus 666 yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~ 697 (745)
||++|+++..++++|||||+|.++|++..++.
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999986654
No 11
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.3e-19 Score=179.97 Aligned_cols=248 Identities=14% Similarity=0.181 Sum_probs=189.6
Q ss_pred cCcHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc-----------------------------
Q 004548 430 YHSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES----------------------------- 473 (745)
Q Consensus 430 ~~~~~r~~~~~iv~~~-------~f~~~i~~iilln~i~l~~~~~~~~~~~----------------------------- 473 (745)
.++.+++.++-+.+.| ....+..++|+++++..|+||-++..+.
T Consensus 169 P~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~ 248 (507)
T KOG1545|consen 169 PRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGD 248 (507)
T ss_pred CcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccc
Confidence 3678888988888754 3556678889999999999986432111
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHhhccc-hhhhcccccchhhHHHHHHHHHHHHhhcCCCCcc----ccchhhHHHH
Q 004548 474 -SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRY 547 (745)
Q Consensus 474 -~~~~~~~~ie~~f~~if~iE~~lKi~a~G~-~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~----~~~~~~~lr~ 547 (745)
...+.+.++|..|.++|++|.++|.+++.- ..|+++-.|++|++.++..++......+...+.+ ...+..++|+
T Consensus 249 ~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRV 328 (507)
T KOG1545|consen 249 TKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRV 328 (507)
T ss_pred cccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHH
Confidence 011245789999999999999999998753 5789999999999999988887766655432111 1123468999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccc
Q 004548 548 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFN 627 (745)
Q Consensus 548 l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~n 627 (745)
+|+.|++|++|+.|+.++++.+.+|+..|+..+. +++.|-.+|+.||+..+|..+.+.+ ..+
T Consensus 329 iRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElg--------LLIFFlfIgviLFsSavYFAEade~----------~S~ 390 (507)
T KOG1545|consen 329 IRLVRVFRIFKLSRHSKGLQILGQTLRASMRELG--------LLIFFLFIGVILFSSAVYFAEADEP----------ESH 390 (507)
T ss_pred HHHHHHhhheeeccccchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhceeeeeecCCC----------ccC
Confidence 9999999999999999999999999999999864 2233445899999999887543222 368
Q ss_pred cCChhhHHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004548 628 FNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 628 F~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 702 (745)
|.++|.|+|+....||+-|+.|+ ++....+--..+.+.+.+++.+.|+|.+|+.||.+.|-++.+.++
T Consensus 391 F~SIPdaFWwavVTMTTVGYGDm-------~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 391 FSSIPDAFWWAVVTMTTVGYGDM-------VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred CCcCcccceEEEEEEEeeccccc-------eecccCceehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 99999999887777777665554 433445666778888999999999999999999998866655444
No 12
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=192.13 Aligned_cols=192 Identities=11% Similarity=0.097 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhcC-----chhhhhccccceehhhHHHHHHHHHHHHhhc-----------------
Q 004548 135 SLVYEGITLVIL---IIHTFFPITYEG-----SPIFWKSTYTRLKVLCLLILVADFLVYGLYL----------------- 189 (745)
Q Consensus 135 ~~~~e~~~~~~f---~~E~~lk~~~~g-----~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~----------------- 189 (745)
.+++|+++++++ +++-+.++.-.+ ..+||+++||++|++++++++..+++.....
T Consensus 1175 vLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK 1254 (1634)
T PLN03223 1175 RFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYK 1254 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhh
Confidence 345677665444 455566655433 3689999999999999999999887642210
Q ss_pred --CC----------cc-------c-c--------------cchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHH
Q 004548 190 --SP----------IA-------F-N--------------FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL 235 (745)
Q Consensus 190 --~~----------~~-------~-~--------------~~~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~ 235 (745)
+. +. + . ...+-+++.+|++|+++..|.++.+..++.++.++++.++
T Consensus 1255 ~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~ 1334 (1634)
T PLN03223 1255 NLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFF 1334 (1634)
T ss_pred hhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0 0 0012346788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCCh--hhhHHhh-hcCchhHHHHHHHHHHHHHHHH
Q 004548 236 ALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNP--DVWIPAY-KASRWYCLFFVLYVLIGVYFVT 312 (745)
Q Consensus 236 ~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~--dv~~~~~-~~~~~~~ifFi~~~~l~~~~~l 312 (745)
++++++++.||++|+.+||... ..|.|++.|+.+||++++++.+. +.+.+.. ....+..+||++|+++..|+++
T Consensus 1335 IIF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILL 1411 (1634)
T PLN03223 1335 VIFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILF 1411 (1634)
T ss_pred HHHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 47999999999999999975431 1122222 2456689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004548 313 NLILAVVYDSFKSQLAK 329 (745)
Q Consensus 313 nl~iaVi~~~f~~~~~~ 329 (745)
|||+|||.++|++.+++
T Consensus 1412 NMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1412 NFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987654
No 13
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.8e-16 Score=160.07 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc-hhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhcc
Q 004548 136 LVYEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~~g~-~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~~ 214 (745)
+.+|..|+++|+.|.++|+.+.+. -+|.|+...++|++.++...+.+++.-.. +.....-.+|++|++|++++.+++
T Consensus 230 FclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHS 307 (632)
T KOG4390|consen 230 FCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHS 307 (632)
T ss_pred EEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeecccc
Confidence 557999999999999999988765 46999999999999999999877665321 222245678999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhHHhhhcCc
Q 004548 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASR 294 (745)
Q Consensus 215 ~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~ 294 (745)
+++|.+..+++.+..+++-+++-+..-+++|| .+..+.+.....+.|++++.|+|--.+.+||-||+|+ .|..-.+.
T Consensus 308 QGLRILGYTLKSCASELGFLlFSLtMAIIIFA--TvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDM-Vp~TIaGK 384 (632)
T KOG4390|consen 308 QGLRILGYTLKSCASELGFLLFSLTMAIIIFA--TVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDM-VPSTIAGK 384 (632)
T ss_pred cccchhhhhHHHHHHHHhHHHHHHHHHHHHHH--HHHHhhhccccccccccCcHhHhhheeeeeecccccc-chHHHHHH
Confidence 99999999999999999887777777778887 4445556555678999999999999999999999995 66554444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 295 WYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 328 (745)
Q Consensus 295 ~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~ 328 (745)
+ |.+..-+.+.+++.|.+.||+.||+...-
T Consensus 385 I----fGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 385 I----FGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred H----hhhhhcccceEEEeccccEEEechhHHHh
Confidence 3 44566677888999999999999997543
No 14
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.49 E-value=5e-13 Score=155.37 Aligned_cols=200 Identities=18% Similarity=0.308 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcC-------------CCCccccchhh-
Q 004548 478 VWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSNGE- 543 (745)
Q Consensus 478 ~~~~ie~~f~~if~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~-------------~~~~~~~~~~~- 543 (745)
...++-++|.++|+++.+.++.-++.+.|+++.||+.|+.++.++++..++.... .+...+.+-..
T Consensus 467 l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~ 546 (798)
T KOG3599|consen 467 LCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEV 546 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHH
Confidence 3456778889999999999999888889999999999999998888766554221 11111111001
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCc
Q 004548 544 ---------WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLE 614 (745)
Q Consensus 544 ---------~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~ 614 (745)
.+-++-.+-.+|++|+++.++.++++..|+.++.++++.+.+..+++++.||++|..+||...
T Consensus 547 a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-------- 618 (798)
T KOG3599|consen 547 AQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------
Confidence 122344566788999999999999999999999999999999999999999999999999874
Q ss_pred CCccccccccccccCChhhHHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004548 615 ETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 694 (745)
Q Consensus 615 ~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~ 694 (745)
-||+||.+|++|++..+-|+ +-.......+...+.+||.++.+++.++++|||+|+|.+.|.+.+
T Consensus 619 -----------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk 683 (798)
T KOG3599|consen 619 -----------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVK 683 (798)
T ss_pred -----------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 48999999999999998872 222222233445688999999999999999999999999999988
Q ss_pred hhhhhh
Q 004548 695 ELESSE 700 (745)
Q Consensus 695 ~~~~~~ 700 (745)
...+++
T Consensus 684 ~~~~~~ 689 (798)
T KOG3599|consen 684 ADLAKE 689 (798)
T ss_pred HHHhhc
Confidence 777663
No 15
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.49 E-value=7.3e-13 Score=148.04 Aligned_cols=188 Identities=19% Similarity=0.345 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcC------------CCCccccchh-----
Q 004548 480 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSNG----- 542 (745)
Q Consensus 480 ~~ie~~f~~if~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~------------~~~~~~~~~~----- 542 (745)
+.+-.++.++|+...+.|+...| ++|+++.||++|++++++++...++.... .+...+.+-.
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 45566788889999999999999 69999999999999988777654432111 0111111100
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCc
Q 004548 543 -----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 617 (745)
Q Consensus 543 -----~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~ 617 (745)
...-++-.+-.+|++|+++.++++..+..|+..+.+.+..++.+++++++.||..|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 1222344556789999999999999999999999999999999999999999999999999753
Q ss_pred cccccccccccCChhhHHHHHHHHhhcc-CHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 618 LADDDYLLFNFNDYPNGMVTLFNLLVMG-NWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 692 (745)
Q Consensus 618 ~~~~~y~~~nF~~f~~a~~tLf~i~t~~-~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~ 692 (745)
.+|.|++.|+.++++++.++ ++.++ ...+...+.+||++|.++..++++|+|+|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~-----~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDEL-----YQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999886 33322 1233467899999999999999999999999999975
No 16
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.9e-16 Score=159.89 Aligned_cols=237 Identities=14% Similarity=0.150 Sum_probs=175.3
Q ss_pred HHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccc----------hhhHHHHHHHHHHHHHHHHHHH
Q 004548 433 PFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQES----------SLQSVWQEVEFVFGWIYVLEMA 495 (745)
Q Consensus 433 ~~r~~~~~iv~~~~-------f~~~i~~iilln~i~l~~~~~~~~~~~----------~~~~~~~~ie~~f~~if~iE~~ 495 (745)
.+|+++++-.++|. |.++.-+.|.+++++-.+|+.+-...+ .+...+..+|..|+.||+.|.+
T Consensus 166 s~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EYl 245 (632)
T KOG4390|consen 166 SLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEYL 245 (632)
T ss_pred hHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHHH
Confidence 46777888777764 888888889999999888875422111 1122345688999999999999
Q ss_pred HHHhhcc-chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004548 496 LKIYSYG-FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 574 (745)
Q Consensus 496 lKi~a~G-~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~ 574 (745)
||+++.. -.+|.|+...++|.+.++..+|++++.-...-+..+ --+|+||++|++|..++.+++|.+..|+.
T Consensus 246 LRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaF-------VTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T KOG4390|consen 246 LRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAF-------VTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T ss_pred HHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCcccccee-------EEEEeeeeeeeeeecccccccchhhhhHH
Confidence 9999663 357889999999999998888877654322211111 23788999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHHHHHHH
Q 004548 575 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSY 654 (745)
Q Consensus 575 ~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~ 654 (745)
.+...++-++.-+-+.+++||.+...-=+|.. ..+|.++|.|+|-....+|+-|++|+.
T Consensus 319 SCASELGFLlFSLtMAIIIFATvMfYAEKg~~------------------at~FTsIPaaFWYTIVTmTTLGYGDMV--- 377 (632)
T KOG4390|consen 319 SCASELGFLLFSLTMAIIIFATVMFYAEKGSS------------------ATKFTSIPAAFWYTIVTMTTLGYGDMV--- 377 (632)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCcHhHhhheeeeeeccccccc---
Confidence 99998876666665666677765322222211 369999999998766666666666554
Q ss_pred HhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 004548 655 KELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 701 (745)
Q Consensus 655 ~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~ 701 (745)
.+..++-.|.+..-+++++++.|+|.+|+.||+..|-+++...
T Consensus 378 ----p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRAD 420 (632)
T KOG4390|consen 378 ----PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420 (632)
T ss_pred ----hHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhh
Confidence 3456667778888889999999999999999999876655443
No 17
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.44 E-value=1.7e-12 Score=145.18 Aligned_cols=178 Identities=21% Similarity=0.365 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhc------------CCccc-c------------
Q 004548 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------------SPIAF-N------------ 195 (745)
Q Consensus 141 ~~~~~f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~------------~~~~~-~------------ 195 (745)
+++++|+..-+.|+...| ++|++++||++|+++++++++.+++..... ++..+ .
T Consensus 219 ~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~ 297 (425)
T PF08016_consen 219 LFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYR 297 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHH
Confidence 345566677777888888 779999999999999999888766544211 00000 0
Q ss_pred --cchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHH
Q 004548 196 --FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQM 273 (745)
Q Consensus 196 --~~~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~l 273 (745)
...+-.+-.+|.+|+++..+.+..+.+++.++.++++..+++++++++.||..|..+||+.. ..|.|+..|+.++
T Consensus 298 ~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~---~~f~s~~~s~~tl 374 (425)
T PF08016_consen 298 YLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS---EDFSSFSSSLVTL 374 (425)
T ss_pred HHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccCCHHHHHHHH
Confidence 11122346788888999999999999999999999999999999999999999999999754 4699999999999
Q ss_pred HHHHhcCCChhhhHHhh-hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 274 FVLFTTSNNPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (745)
Q Consensus 274 f~~~t~~~w~dv~~~~~-~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~ 325 (745)
+.++-++.-.+ ... .......+||++|+++..++++|+++|++.++|++
T Consensus 375 ~~~l~g~~~~~---~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 375 FRMLLGDFDYD---ELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHhcCCCchh---hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99887642212 222 33455689999999999999999999999999975
No 18
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.35 E-value=4.2e-11 Score=139.48 Aligned_cols=183 Identities=15% Similarity=0.207 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhcCCc-------------cc-c----------c
Q 004548 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPI-------------AF-N----------F 196 (745)
Q Consensus 141 ~~~~~f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~-------------~~-~----------~ 196 (745)
++.+.|+++-+.++.-.+.+.|++++||++|++++.++++.+++.....+.. .+ . .
T Consensus 474 l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~ 553 (798)
T KOG3599|consen 474 LFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAA 553 (798)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHH
Confidence 3455667777888876777789999999999999999999887765532111 00 0 0
Q ss_pred c----hhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHH
Q 004548 197 L----PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQ 272 (745)
Q Consensus 197 ~----~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~ 272 (745)
+ .+-.+=.+|.+|+++..+.++.+-++|.+++++++.+++.++++++.||++|+.+||... .+|.|+.+|+.+
T Consensus 554 ~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---~~f~~f~~s~~t 630 (798)
T KOG3599|consen 554 RNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---SDFRTFVASIVT 630 (798)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CChHHHHHHHHH
Confidence 0 112345678888999999999999999999999999999999999999999999999864 469999999999
Q ss_pred HHHHHhcCCChhhhHH-hhhcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 273 MFVLFTTSNNPDVWIP-AYKAS-RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (745)
Q Consensus 273 lf~~~t~~~w~dv~~~-~~~~~-~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~ 330 (745)
++-..-+ |.-.. ....+ ....+||.+|++++.++++|||+|+|.+.|.+.+...
T Consensus 631 ~~~~~~G----~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~ 686 (798)
T KOG3599|consen 631 LLRYILG----DFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADL 686 (798)
T ss_pred HHHHHhc----cCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 9988775 33221 22444 4467899999999999999999999999998766543
No 19
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.16 E-value=7.7e-10 Score=132.77 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHh---hc--CC------CCc----cccchhhH
Q 004548 480 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETIT---LA--SP------NGQ----TFLSNGEW 544 (745)
Q Consensus 480 ~~ie~~f~~if~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~---~~--~~------~~~----~~~~~~~~ 544 (745)
+++.......+..+....++..|...|+++.||.+|++.....+...+.. .. .. ... ........
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEAL 471 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Confidence 34444555667777777888888889999999999996543333222111 00 00 000 00001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-cCCcccccc
Q 004548 545 IRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKL-EETDLADDD 622 (745)
Q Consensus 545 lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~-~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~-~~~~~~~~~ 622 (745)
+-+..++..+|++.+++.++.+--+..++.+.+. .++.++++++++++-||+....+|+.......+.. +.+. ....
T Consensus 472 ~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 550 (743)
T TIGR00870 472 FAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSCE 550 (743)
T ss_pred HHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-cccc
Confidence 4455667777777777777777778888999999 99999999999999999999999976432110000 0000 0011
Q ss_pred ccccccCChhhHHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004548 623 YLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 623 y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 702 (745)
.....|.++..++.++|..+-|++-. . .........++.++|++|.++++++++||+||++-++|++..++.+.+.+
T Consensus 551 ~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk 627 (743)
T TIGR00870 551 KQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWK 627 (743)
T ss_pred cccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence 12368999999999999888776422 1 11111123678999999999999999999999999999998877666554
No 20
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.06 E-value=8.1e-10 Score=118.68 Aligned_cols=241 Identities=15% Similarity=0.251 Sum_probs=160.2
Q ss_pred HHHHHHHhccccch------HHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccc---
Q 004548 433 PFSEKLKAFIRSTK------FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF--- 503 (745)
Q Consensus 433 ~~r~~~~~iv~~~~------f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~lKi~a~G~--- 503 (745)
+.+.+++++.+.|. +..++.++++.++++-++.+..+.+ ......+.++|++++++|.+|+++|+++.|-
T Consensus 76 r~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~-~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r 154 (654)
T KOG1419|consen 76 RIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYE-KLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR 154 (654)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45667888887663 4455566666666666665543322 2345678899999999999999999997653
Q ss_pred -------hhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004548 504 -------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTL 576 (745)
Q Consensus 504 -------~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~ 576 (745)
-+|-+.+..++|+++++.+++...+ .+.+..+ ....+|-+|.+.+||++|+=+.--.++.+.+.+..-
T Consensus 155 YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH 229 (654)
T KOG1419|consen 155 YRGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAH 229 (654)
T ss_pred cccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCcccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhh
Confidence 4677899999999988877543322 2222221 234567788888888888877777777777766655
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHH-HHHHHhhccCHHHHHHHHH
Q 004548 577 IPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV-TLFNLLVMGNWQVWMQSYK 655 (745)
Q Consensus 577 ~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~-tLf~i~t~~~W~~im~~~~ 655 (745)
-..++....+-|+. .+|+..-+++=.-...+. + .+..|.+++.|+| .+..++|.+ |.
T Consensus 230 ~~ELiTt~YIGFL~-LIfsSflVYLaEKd~~~e-------~------~n~~F~TyADALWWG~ITltTIG--------YG 287 (654)
T KOG1419|consen 230 SKELITTWYIGFLV-LIFSSFLVYLAEKDAQGE-------G------TNDEFPTYADALWWGVITLTTIG--------YG 287 (654)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhcccccc-------c------ccccchhHHHHHHhhheeEEeec--------cC
Confidence 55554433333222 344444333322211110 0 1357999999996 567777766 78
Q ss_pred hhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 004548 656 ELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 701 (745)
Q Consensus 656 ~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~ 701 (745)
|.++..|..-+..+.+-+.++-+..|+-+++-..|.-..++...++
T Consensus 288 Dk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQK 333 (654)
T KOG1419|consen 288 DKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQK 333 (654)
T ss_pred CcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHH
Confidence 8888888888888888788888999999999999987665544443
No 21
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.03 E-value=2.3e-08 Score=120.14 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhc---C--------Cc-----c----cccch
Q 004548 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---S--------PI-----A----FNFLP 198 (745)
Q Consensus 139 e~~~~~~f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~---~--------~~-----~----~~~~~ 198 (745)
....+..+.++-...++..|...|+++.||++|++.+...++.++...... . .. . ..+..
T Consensus 395 ~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 474 (743)
T TIGR00870 395 IVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAF 474 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Confidence 345556667777777777888889999999999976655555443221100 0 00 0 01122
Q ss_pred hhhhhhhHHHHHhhccHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhcccCc--c--------------ccc
Q 004548 199 LRIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTV--Q--------------GNM 261 (745)
Q Consensus 199 lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~-~i~~v~~l~~~~~~~fai~g~~lF~~~~--~--------------~~~ 261 (745)
.-++..+|.+.+++.++.+--...++.+++. +++..+++++++++-||+...++|+... + ...
T Consensus 475 ~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 475 ALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 3345667777777777776667788888888 9999999999999999999999986321 0 125
Q ss_pred cccchHHHHHHHHHHHhcCCChhhhH-HhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 262 VFTSFGTTLYQMFVLFTTSNNPDVWI-PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (745)
Q Consensus 262 ~F~~~~~s~~~lf~~~t~~~w~dv~~-~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~ 330 (745)
.|.++..++.++|..+-+.+ |... .......+..++|++|+++..++++||+||++.++|++..+++
T Consensus 555 ~f~~~~~s~~~lf~~~~G~~--~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~ 622 (743)
T TIGR00870 555 AYSTLFETSQELFWAIIGLG--DLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDA 622 (743)
T ss_pred cccCHHHHHHHHHHHHcCCc--ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Confidence 69999999999998776543 3211 1112345678899999999999999999999999999766553
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.9e-08 Score=108.34 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc----------hhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhh
Q 004548 135 SLVYEGITLVILIIHTFFPITYEGS----------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPY 204 (745)
Q Consensus 135 ~~~~e~~~~~~f~~E~~lk~~~~g~----------~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~ 204 (745)
.+++|++.+++|.+|.++|+++.|. -.|-++|..++|+++++.+++-+.+.....-..+..++.+|.+++
T Consensus 127 L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQI 206 (654)
T KOG1419|consen 127 LYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQI 206 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHH
Confidence 3678999999999999999997663 347899999999998888765333321100000113455666666
Q ss_pred hHHHHHhhccHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--CccccccccchHHHHHHHHHHHhcC
Q 004548 205 IRVVFFILNIRQLRDTLFVL-AGMLGTYLNVLALGLLFLLFSSWLAYVIFE-D--TVQGNMVFTSFGTTLYQMFVLFTTS 280 (745)
Q Consensus 205 lR~lrli~~~~~lr~~~~~l-~~~~~~i~~v~~l~~~~~~~fai~g~~lF~-~--~~~~~~~F~~~~~s~~~lf~~~t~~ 280 (745)
||.+|+=+.- +..+++.++ ..--+++.-...+- ++.++|+-+-+++=. + ..++...|+++.+|+|+=.+.+||-
T Consensus 207 LRmlr~DRrg-gTWKLLGSvV~aH~~ELiTt~YIG-FL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTI 284 (654)
T KOG1419|consen 207 LRMLRMDRRG-GTWKLLGSVVYAHSKELITTWYIG-FLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTI 284 (654)
T ss_pred HHHHHhhccC-chhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEee
Confidence 6666555433 223333333 22333433322222 223334433344433 2 1234567999999999999999999
Q ss_pred CChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 281 NNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRR 339 (745)
Q Consensus 281 ~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~~~~~~~~r~ 339 (745)
||+|. +|..-.++..+..|- +.++-++.+.-+++-..|.--.+++..+....|+
T Consensus 285 GYGDk-~P~TWlGr~laa~fs----ligiSFFALPAGILGSGfALKVQeq~RQKHf~rr 338 (654)
T KOG1419|consen 285 GYGDK-TPQTWLGRLLAACFS----LIGISFFALPAGILGSGFALKVQEQHRQKHFNRR 338 (654)
T ss_pred ccCCc-CcccchhHHHHHHHH----HHHHHHHhcccccccchhhhhhHHHHHHHHHHhh
Confidence 99998 666555554433332 2234466788888888887444333333333333
No 23
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.58 E-value=7.2e-07 Score=101.59 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhh---cCCC--C------------ccccchhhHHHH
Q 004548 485 VFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITL---ASPN--G------------QTFLSNGEWIRY 547 (745)
Q Consensus 485 ~f~~if~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~---~~~~--~------------~~~~~~~~~lr~ 547 (745)
..++-++.|-+-.++.-|++.|+++.||++|+....+.+...++.. ...+ . .+.+-.....-+
T Consensus 392 ~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAi 471 (822)
T KOG3609|consen 392 LWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAI 471 (822)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHH
Confidence 3344467777888889999999999999999987766554443321 1100 0 000111123345
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccc
Q 004548 548 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFN 627 (745)
Q Consensus 548 l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~n 627 (745)
..+|-.+|++-++..++.+--+.-++-+.+..+..++++..++++.|++=-.+++......-..++++..+... ..
T Consensus 472 A~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~----~~ 547 (822)
T KOG3609|consen 472 ANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT----DS 547 (822)
T ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc----cc
Confidence 56677777777777788887777788899999999999998888899886666666543221111122112111 26
Q ss_pred cCChhhHHHHHHHHh-hccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004548 628 FNDYPNGMVTLFNLL-VMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 628 F~~f~~a~~tLf~i~-t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 702 (745)
|.|+..++-+||=-. +.-+=..++-.+...-...++.+.|.+|+++..++++||.||.+-++|++.-+.+..|.+
T Consensus 548 fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 548 FSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred cccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 888888887776222 111100011111111113577899999999999999999999999999998877777665
No 24
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.27 E-value=3.8e-05 Score=87.91 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=130.4
Q ss_pred HHHHHHHH---HHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhc---CCcc-------------c----
Q 004548 138 YEGITLVI---LIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-------------F---- 194 (745)
Q Consensus 138 ~e~~~~~~---f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~---~~~~-------------~---- 194 (745)
+|.+...+ ++.|-+-.++..|.+.|+++-||++|++.+.+.+..++.-.... +... +
T Consensus 386 vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~ 465 (822)
T KOG3609|consen 386 LEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA 465 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence 35554443 45777778889999999999999999999988888777543310 0000 0
Q ss_pred --ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccc---C---------cccc
Q 004548 195 --NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED---T---------VQGN 260 (745)
Q Consensus 195 --~~~~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~---~---------~~~~ 260 (745)
....-.++-.+|.+-++..++.+--+--++.+++.++...++++.++++-|++=-.+++.- + +...
T Consensus 466 E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~ 545 (822)
T KOG3609|consen 466 EGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT 545 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc
Confidence 0122345677888888887777776667778888899988888888888888544455531 0 1111
Q ss_pred ccccchHHHHHHHHHHHh-cCCChhhhHHh--hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 261 MVFTSFGTTLYQMFVLFT-TSNNPDVWIPA--YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 332 (745)
Q Consensus 261 ~~F~~~~~s~~~lf~~~t-~~~w~dv~~~~--~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~~~~ 332 (745)
..|.++..|+.+||=.+. ..+=.++..+. .-...+..+-|.+|.++...+++||+||.+.++|++....+-.
T Consensus 546 ~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADv 620 (822)
T KOG3609|consen 546 DSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADV 620 (822)
T ss_pred cccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchh
Confidence 259999998887775442 22211111111 1223345567888999999999999999999999987665433
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.21 E-value=6.5e-05 Score=91.31 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc------c---------chhhhccc
Q 004548 446 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 510 (745)
Q Consensus 446 ~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~lKi~a~------G---------~~~y~~~~ 510 (745)
+|+.++.++++.+++.+-++..... ......+.+++.++.++|.+|+++++..- | .++|++ .
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~--~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~ 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLN--ASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-T 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeC--CCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-H
Confidence 5888888888888888777654321 11222467789999999999999998632 1 257775 4
Q ss_pred ccchhhHHHHHH
Q 004548 511 QNRFDFLVTWVI 522 (745)
Q Consensus 511 wn~fD~ivvi~~ 522 (745)
|-++|++.++..
T Consensus 140 ~f~~Dlis~lP~ 151 (823)
T PLN03192 140 WFLMDVASTIPF 151 (823)
T ss_pred hHHHHHHHHhHH
Confidence 789999876654
No 26
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.17 E-value=3.5e-05 Score=93.63 Aligned_cols=160 Identities=13% Similarity=0.212 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------C---------chhhhhccccceehhhHHHHHHHHHHHHhhcCC-cccccchhh
Q 004548 137 VYEGITLVILIIHTFFPITYE------G---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSP-IAFNFLPLR 200 (745)
Q Consensus 137 ~~e~~~~~~f~~E~~lk~~~~------g---------~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~-~~~~~~~lr 200 (745)
++|.++-++|++|++++.... | .+.|+| .|-++|++.+++..+ +........ ....+..+|
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~--i~~~~~~~~~~~~~~~~l~ 172 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPFQA--LAYLITGTVKLNLSYSLLG 172 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHH--HHHHhcCCccchHHHHHHH
Confidence 469999999999999986421 1 255775 488999887776533 111111000 001122334
Q ss_pred hhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ccccc-------ccc------cch
Q 004548 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGN-------MVF------TSF 266 (745)
Q Consensus 201 ~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~-~~~~~-------~~F------~~~ 266 (745)
++|++|..|+.+.+..+.+..+.-. ..-.+..++++++++.-.+|.+.+.+-.. +.++. .+| ..+
T Consensus 173 llrl~Rl~ri~~~~~~le~~~~~~~-~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Y 251 (823)
T PLN03192 173 LLRFWRLRRVKQLFTRLEKDIRFSY-FWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRY 251 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHH
Confidence 4444444333333333332221100 01122223333333333333333332211 11111 112 225
Q ss_pred HHHHHHHHHHHhcCCChhhhHHhhhcCchhHHHHH
Q 004548 267 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFV 301 (745)
Q Consensus 267 ~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi 301 (745)
..|+++.++++||.|++|+ .|......+.+++++
T Consensus 252 i~slYwai~TmtTVGYGDi-~p~t~~E~i~~i~~m 285 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDL-HAVNTIEMIFIIFYM 285 (823)
T ss_pred HHHHHHHHHHHhhccCCCc-CCCccchHHHHHHHH
Confidence 5699999999999999998 565555554444433
No 27
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.85 E-value=0.00055 Score=77.97 Aligned_cols=165 Identities=12% Similarity=0.185 Sum_probs=120.6
Q ss_pred CchhhhhccccceehhhHHHHHHHHHHHHhhcCCcccc----cchh-hhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHH
Q 004548 158 GSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN----FLPL-RIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYL 232 (745)
Q Consensus 158 g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~----~~~l-r~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~ 232 (745)
.+++||-+.-|+++.+++..+++....... ..... ..++ -.+-..+.+.++..++..-..+..+....++++
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktfl 663 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFL 663 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHH
Confidence 357799999999999988887774332211 00001 1111 234567778888888877777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChh-hh-HHhh-----hcCchhHHHHHHHHH
Q 004548 233 NVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD-VW-IPAY-----KASRWYCLFFVLYVL 305 (745)
Q Consensus 233 ~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~d-v~-~~~~-----~~~~~~~ifFi~~~~ 305 (745)
..+.++.++++.|++--+.+|+... .|.|++-|.+..|+++-+|+--. ++ .+.+ .....+.+-|+.|.+
T Consensus 664 k~f~vfs~lliaF~lsFYVll~~~~----eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~I 739 (929)
T KOG0510|consen 664 KSFMVFSILLIAFGLSFYVLLNKSS----EFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTI 739 (929)
T ss_pred HHHHHHHHHHHHhhhhheeeecCCC----CcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHH
Confidence 8999999999999988888888754 39999999999999999875422 32 2333 233445677999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 306 IGVYFVTNLILAVVYDSFKSQLAK 329 (745)
Q Consensus 306 l~~~~~lnl~iaVi~~~f~~~~~~ 329 (745)
+++.++|||++|.-+..-+...++
T Consensus 740 fmtIvLMNLLiGLAV~DIq~vqk~ 763 (929)
T KOG0510|consen 740 FMTIVLMNLLIGLAVGDIQGVQKH 763 (929)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999877765544
No 28
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.28 E-value=0.0039 Score=71.34 Aligned_cols=170 Identities=12% Similarity=0.142 Sum_probs=111.0
Q ss_pred chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 004548 503 FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE--WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSL 580 (745)
Q Consensus 503 ~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~--~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l 580 (745)
++.||.+.-|+.|.++...+++...-.+. +.+ ...+ .--+.-.+-..+++-++++++.+...+.-+.....++
T Consensus 588 k~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~--~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktf 662 (929)
T KOG0510|consen 588 KRHYFMDIENIMEWFIYTSALITVYPLFF---EIT--AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTF 662 (929)
T ss_pred HHHHHhhhHHHHHHHHHhhhhheeehhhh---hhH--HHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHH
Confidence 36899999999999988776654322111 111 1122 1223344666788888888887776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHH-HHHHHHhhh-
Q 004548 581 MPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV-WMQSYKELT- 658 (745)
Q Consensus 581 ~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~-im~~~~~~~- 658 (745)
+..+.+..++++.|++--.-+|+.. ..|.+.+.|.+..|.+|.||.=.. .|..-....
T Consensus 663 lk~f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~ 722 (929)
T KOG0510|consen 663 LKSFMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRN 722 (929)
T ss_pred HHHHHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccccccccchhhcC
Confidence 6666565566666666555555543 258999999999999999983222 222111111
Q ss_pred ---CCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004548 659 ---GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 697 (745)
Q Consensus 659 ---~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~ 697 (745)
....+.+-|++|.++..++++||.||+-+.--+...+..
T Consensus 723 ~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 723 SLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 124577889999999999999999999887665544433
No 29
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.22 E-value=0.0065 Score=73.18 Aligned_cols=243 Identities=19% Similarity=0.239 Sum_probs=133.6
Q ss_pred HHHHHHHhccccch---HHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Q 004548 433 PFSEKLKAFIRSTK---FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYG------- 502 (745)
Q Consensus 433 ~~r~~~~~iv~~~~---f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~lKi~a~G------- 502 (745)
++.++.+.+...|. |-+++..+.++.+.+..+--.. ++.+ ..++++=++.+.-+.+|.+=+++.-+
T Consensus 779 ~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~--~~~P--s~~Ew~~~~~iftl~~E~vRq~~~se~~~l~~k 854 (1381)
T KOG3614|consen 779 GKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDF--QPSP--SMWEWILFAWIFTLFLEEVRQIFISESGLLPQK 854 (1381)
T ss_pred hHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheecc--CCCC--CccchhHHHHHHHHHHHHHHHHhcCCCcchhhH
Confidence 35666677777764 4444444433333332221111 1111 23334434444556788887777432
Q ss_pred chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 004548 503 FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIR-YLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLM 581 (745)
Q Consensus 503 ~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr-~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~ 581 (745)
.+-||.+.||..|.+++..-+++.++.....+.. ..++++- +--++=.+|++-++...+.+---+.-+.+.++.++
T Consensus 855 v~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~---~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf 931 (1381)
T KOG3614|consen 855 VRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSI---YSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMF 931 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeEecCccce---ecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHHH
Confidence 2569999999999999988888877655442221 1222221 12233445666666666666655556777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCC-hhhHHHHHHHHhhccCHHHHHHHHHh----
Q 004548 582 PYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND-YPNGMVTLFNLLVMGNWQVWMQSYKE---- 656 (745)
Q Consensus 582 ~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~-f~~a~~tLf~i~t~~~W~~im~~~~~---- 656 (745)
.++.++.+.++.|++.--.+ .++.++ ..+.=|++ |..-.+++| |+-..+-++.+..
T Consensus 932 ~flfllaV~LlsfGVarQaI----l~P~e~-----------~~w~l~R~i~y~PYlmif----GeV~a~eID~~~~e~~~ 992 (1381)
T KOG3614|consen 932 FFLFLLAVVLLSFGVARQAI----LRPDEP-----------RHWWLFRNIFYWPYLMLF----GEVPADEIDTCTCEKSF 992 (1381)
T ss_pred HHHHHHHHHHHHhhhhhhhh----cCCCCC-----------chHHHHHHHHHHHHHHHh----ccccHhhhhhhcccccc
Confidence 87777777777777642111 111000 00111222 223333333 3333222222221
Q ss_pred --------------hh--CCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 004548 657 --------------LT--GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 701 (745)
Q Consensus 657 --------------~~--~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~ 701 (745)
.| |++..++..+.|.++.+++++||.||+.-..|....+....-.
T Consensus 993 ~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iW 1053 (1381)
T KOG3614|consen 993 CGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIW 1053 (1381)
T ss_pred cCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11 2344677788999999999999999999888887665554433
No 30
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.17 E-value=0.046 Score=66.19 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhcCc-------hhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccc----hhhhhhhhHHHHHhhc
Q 004548 145 ILIIHTFFPITYEGS-------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFL----PLRIAPYIRVVFFILN 213 (745)
Q Consensus 145 ~f~~E~~lk~~~~g~-------~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~----~lr~~r~lR~lrli~~ 213 (745)
-+++|-+=++...+. +-||.+.||++|.+.+...++..+.-.... +....-+ .--++=.+|.+-.+..
T Consensus 834 tl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f~V 912 (1381)
T KOG3614|consen 834 TLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYFTV 912 (1381)
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhheee
Confidence 345666655543322 459999999999999998888776543310 0001111 1123344566666666
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhH------
Q 004548 214 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI------ 287 (745)
Q Consensus 214 ~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~------ 287 (745)
++.+-=-+..+.+.++.++.+++++.+.++-|++ +-|---.++++ .+.-=+-+.++.-|-++-++-+.+-+.
T Consensus 913 ~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGV-arQaIl~P~e~-~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e~ 990 (1381)
T KOG3614|consen 913 SKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGV-ARQAILRPDEP-RHWWLFRNIFYWPYLMLFGEVPADEIDTCTCEK 990 (1381)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhcCCCCC-chHHHHHHHHHHHHHHHhccccHhhhhhhcccc
Confidence 6666655566667777877766666666666652 33322222222 111112222333333333332311110
Q ss_pred -----H-----------hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 288 -----P-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (745)
Q Consensus 288 -----~-----------~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~ 329 (745)
| ...+++...+--++|+++.+.+++||++|++-..|.+..++
T Consensus 991 ~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 991 SFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred cccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11233444566779999999999999999999999876554
No 31
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.019 Score=67.02 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccc-------hhhHHHHHHHHHHHHHHHHHHHHHHhhc-----------cc----
Q 004548 446 KFGYMISIILIVNLVAVIVETTLDIQES-------SLQSVWQEVEFVFGWIYVLEMALKIYSY-----------GF---- 503 (745)
Q Consensus 446 ~f~~~i~~iilln~i~l~~~~~~~~~~~-------~~~~~~~~ie~~f~~if~iE~~lKi~a~-----------G~---- 503 (745)
.|++++.+..+.+++.--++.+....+. .....+.+++.+.-++|++.+++++..- .+
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 4777776666666655444432211110 1234567888999999999999998732 11
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHhhcCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH-
Q 004548 504 ENYWRDGQNRFDFLVTWVIVIGETITLASP-NGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLM- 581 (745)
Q Consensus 504 ~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~-~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~- 581 (745)
.+|++ .|-++|++.++.. ..++..... +............++...|+.|+.|+++.++++.........+.-.-.
T Consensus 159 ~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a 235 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAA 235 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 57888 7999999987632 222211110 000001112356778888888888888888887776655553333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-cCCCCCcCCccccc----cccc--cccCChhhHH-------HHHHHHhhccCH
Q 004548 582 PYLGTIFCVQCIYCSLGVQIFGGIVN-AGNAKLEETDLADD----DYLL--FNFNDYPNGM-------VTLFNLLVMGNW 647 (745)
Q Consensus 582 ~~~~ll~~~~~ifAi~G~~lF~g~~~-~~~~~~~~~~~~~~----~y~~--~nF~~f~~a~-------~tLf~i~t~~~W 647 (745)
..+++.++..-..|.+ ..+-+.... .|.... +..... .+.. ++|..+..+. +++-.++|.+
T Consensus 236 ~ll~~~~l~sH~~gc~-wYlia~~~~~~~~~~~--tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG-- 310 (727)
T KOG0498|consen 236 LLLSVYLLASHWAGCI-WYLIAIERPASCPRKA--TWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVG-- 310 (727)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcccccCcccc--ccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhcc--
Confidence 1111111111111111 122222222 122210 111100 1111 2355544433 2233344443
Q ss_pred HHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 648 QVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 692 (745)
Q Consensus 648 ~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~ 692 (745)
+.+.+++.++=+.|.+++++.+.++..++||-+ .++.+
T Consensus 311 ------~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm-t~~iq 348 (727)
T KOG0498|consen 311 ------YGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM-TALLQ 348 (727)
T ss_pred ------CCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH-HHhHH
Confidence 455555667778888888888888888888864 34433
No 32
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.04 E-value=0.04 Score=63.56 Aligned_cols=118 Identities=14% Similarity=0.227 Sum_probs=82.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHHHHHHHH
Q 004548 576 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 655 (745)
Q Consensus 576 ~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~im~~~~ 655 (745)
.+..++.++.+..++++-||..-..+|.+-....++..+. ...+....-.++++.+++++|+.+.+-+ ++.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~~------dl~ 609 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGMG------DLE 609 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhhh------hhh
Confidence 3567888999998999999998888888765432221110 1111112345668999999999877542 222
Q ss_pred hhhCC---cceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004548 656 ELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 656 ~~~~~---~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 702 (745)
...+. ....+.|++|.++..++++||+||..-|+|.+..++.+.+..
T Consensus 610 ~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk 659 (782)
T KOG3676|consen 610 ACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWK 659 (782)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Confidence 11111 346788999999999999999999999999998877755543
No 33
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.95 E-value=0.035 Score=64.79 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----------cCc----hhhhhccccceehhhHHHHHHHHHHHHhhc-----CCc-cc
Q 004548 136 LVYEGITLVILIIHTFFPITY-----------EGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYL-----SPI-AF 194 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~-----------~g~----~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~-----~~~-~~ 194 (745)
.+++.+.=++|+++++++... ..+ .+|++ .|=++|++.++.. +.++..... ... ..
T Consensus 120 ~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~ 196 (727)
T KOG0498|consen 120 TVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTI 196 (727)
T ss_pred eeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHH
Confidence 356999999999999998631 111 46998 8999999877763 222221100 000 01
Q ss_pred ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC--c------cc---
Q 004548 195 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE----DT--V------QG--- 259 (745)
Q Consensus 195 ~~~~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~----~~--~------~~--- 259 (745)
....+.+.|++|..|++..+..+.+.......+...- .+.+++++++.--+.|-..|- .+ + .+
T Consensus 197 l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~--~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~ 274 (727)
T KOG0498|consen 197 LVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG--AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLG 274 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccc
Confidence 2234455566666666666666666665555443322 344555555555455544441 00 0 00
Q ss_pred ----ccc----ccch------HHHHHHHHHHHhcCCChhh
Q 004548 260 ----NMV----FTSF------GTTLYQMFVLFTTSNNPDV 285 (745)
Q Consensus 260 ----~~~----F~~~------~~s~~~lf~~~t~~~w~dv 285 (745)
..+ |..+ ..|+++-++.+|+-|++++
T Consensus 275 ~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~ 314 (727)
T KOG0498|consen 275 RLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV 314 (727)
T ss_pred cccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc
Confidence 111 3333 3578888899999999887
No 34
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0044 Score=65.64 Aligned_cols=126 Identities=19% Similarity=0.285 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccC
Q 004548 550 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 629 (745)
Q Consensus 550 ~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~ 629 (745)
++-.+-++|-+..++....++-|+.+++|+++.+..-..+++.-|..-|.-.-|.. +-.|+
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPY-------------------HdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPY-------------------HDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecch-------------------HHhhh
Confidence 45566777888889999999999999999998887766666655544443333321 34688
Q ss_pred ChhhHHHHHHHHhhccCHHHHHHHHHhhhCC---cceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004548 630 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 695 (745)
Q Consensus 630 ~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~---~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~ 695 (745)
|+..--=.||.+.-|++--...- .+..-++ ..+.+|..+|+-+--+++++||||+|.++|.....
T Consensus 445 sLntvsECLFSLINGDDMFaTFA-~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATFA-TMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 87666667888887875443321 1222221 23789999999999999999999999999976543
No 35
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.46 E-value=0.2 Score=60.12 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=78.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CCC------------------C
Q 004548 557 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NAK------------------L 613 (745)
Q Consensus 557 lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~-----~~~------------------~ 613 (745)
+-++.+=..+..+++++-+-.+++.--.++-+++.|.|+|+|...|.+.++-. |+. .
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc 2478 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETC 2478 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccC
Confidence 33334444555566666555556655556666778999999999999876321 100 0
Q ss_pred cCCccc--------cc---cccccccCChhhHHHHHH--HHhhccCHHHHHHHHHhhhC-CcceeeehhhHHHHHHHHHH
Q 004548 614 EETDLA--------DD---DYLLFNFNDYPNGMVTLF--NLLVMGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLLL 679 (745)
Q Consensus 614 ~~~~~~--------~~---~y~~~nF~~f~~a~~tLf--~i~t~~~W~~im~~~~~~~~-~~~~~~yFi~~~ii~~~i~l 679 (745)
++..|. +. +-..-.=+++...++|.. -+-.|+|-+|++..-...-+ -.|-.+|=..|+++..+|++
T Consensus 2479 ~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVL 2558 (2706)
T KOG3533|consen 2479 PSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVL 2558 (2706)
T ss_pred CCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 000112233333333322 11234445555432111111 12344566778888899999
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhh
Q 004548 680 NLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 680 nLfvavi~e~F~~~~~~~~~~~~ 702 (745)
||.-|+|+++|..-..++.++++
T Consensus 2559 NLIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2559 NLIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHHhhhhhHHHHHhhhhHHHH
Confidence 99999999999887665555544
No 36
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.39 E-value=0.42 Score=55.50 Aligned_cols=99 Identities=21% Similarity=0.394 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-------------cccccchHHHHHHHHHHHhcCCChhhhHHhhhcC
Q 004548 227 MLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-------------NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS 293 (745)
Q Consensus 227 ~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~-------------~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~ 293 (745)
.+.+++..+++.++|++-||.--+.+|.+..+. ....|+++.+++++|...-+ ..| ++...+.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig--~~d--l~~~~~~ 614 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIG--MGD--LEACENT 614 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhh--hhh--hhhcccc
Confidence 357888999999999999999888999753211 12356678888888887543 333 3444444
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 294 ---RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (745)
Q Consensus 294 ---~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~ 329 (745)
...-+-|++|+++...+++||+||.+-++|.+..++
T Consensus 615 ~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~ 653 (782)
T KOG3676|consen 615 DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQE 653 (782)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 334567999999999999999999999999876554
No 37
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.34 E-value=0.096 Score=62.63 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=42.7
Q ss_pred hHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004548 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED 255 (745)
Q Consensus 205 lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~ 255 (745)
+-.|-++..=..+..+++++.+.-+.|...+++-++++++|||+|+.+|.+
T Consensus 2396 iLLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkd 2446 (2706)
T KOG3533|consen 2396 ILLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKD 2446 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555556678888999999999999999999999999999999999973
No 38
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.89 E-value=0.076 Score=58.50 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=61.5
Q ss_pred ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHH
Q 004548 195 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 274 (745)
Q Consensus 195 ~~~~lr~~r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf 274 (745)
....++.+-+++.+.++.+.+...+...+.. .-+.++.+..+++|+++|...+++..+ ..+.++.+|++..+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~--~~~~s~~dA~y~sv 177 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFS--PPIESLSTAFYFSI 177 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccC--cCCCCHHHHHHhhh
Confidence 4556666777777777766665554422211 123445556677888899888876432 35789999999999
Q ss_pred HHHhcCCChhhhHHhhhcCc
Q 004548 275 VLFTTSNNPDVWIPAYKASR 294 (745)
Q Consensus 275 ~~~t~~~w~dv~~~~~~~~~ 294 (745)
+++||.|++|+ .|....++
T Consensus 178 vt~tTvGyGdi-~p~t~~gr 196 (393)
T PRK10537 178 VTMSTVGYGDI-VPVSESAR 196 (393)
T ss_pred eeeecccCCCC-CCCCHHHH
Confidence 99999999998 45444333
No 39
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.12 Score=55.07 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=72.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccc--ccccchHHHHHHHHHHHhcCCChh
Q 004548 207 VVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGN--MVFTSFGTTLYQMFVLFTTSNNPD 284 (745)
Q Consensus 207 ~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~--~~F~~~~~s~~~lf~~~t~~~w~d 284 (745)
++|.+..+.....++-++..++|+++.. +.+...+|. |+..-|=-.-|+ ..|.|....--.||.++-+ |
T Consensus 390 VIRYLgfF~~YNvlIlTl~~alPkVlRF---c~ca~mIYl--Gy~FCGWIVLGPYHdKFrsLntvsECLFSLING----D 460 (566)
T KOG3733|consen 390 VIRYLGFFKTYNVLILTLKKALPKVLRF---CCCAAMIYL--GYCFCGWIVLGPYHDKFRSLNTVSECLFSLING----D 460 (566)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhHHHHHH---HHHHHHHHH--HHhheeeEEecchHHhhhhHHHHHHHHHHhhCc----h
Confidence 3444455666778889999999997664 444444443 554433111112 2488887777777777754 5
Q ss_pred hhHHhh----hcCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 285 VWIPAY----KASRWY----CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 328 (745)
Q Consensus 285 v~~~~~----~~~~~~----~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~ 328 (745)
-|.... ..+.+. -+|.-+|+-+--|++++||+|+|.++|...++
T Consensus 461 DMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 461 DMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 553222 223222 36777888888899999999999999986543
No 40
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.30 E-value=0.026 Score=61.93 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCch-hhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhcc
Q 004548 136 LVYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 214 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~~~g~~-~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~~ 214 (745)
.-+|..|-++|.+-..+|.++..-+ -||-....++|++.+=.+++.+-+ -+..--+|.||.+|++..
T Consensus 165 qqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl-----------~r~wlglrflralrlmtv- 232 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYL-----------NRSWLGLRFLRALRLMTV- 232 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEe-----------ccchHHHHHHHHHHhccH-
Confidence 4468888888888888887765543 367777778888776666653321 122223677777777743
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccc-----hHHHHHHHHHHHhcCCChhhh
Q 004548 215 RQLRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTS-----FGTTLYQMFVLFTTSNNPDVW 286 (745)
Q Consensus 215 ~~lr~~~~~l~~~-~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~-----~~~s~~~lf~~~t~~~w~dv~ 286 (745)
+.+-..+..++.+ --.+..+.-+++...+.-| --.++-.+..++..+|.| +.++.+-+.+.++|.|++|+.
T Consensus 233 pdilqylnilktsssirl~qlvsifisvwltaa-g~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvy 309 (1103)
T KOG1420|consen 233 PDILQYLNILKTSSSIRLVQLVSIFISVWLTAA-GFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVY 309 (1103)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHhhc-ceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecccccee
Confidence 4444444444422 1122222222222222211 011233332223344543 455666777889999999983
No 41
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.78 E-value=0.057 Score=43.04 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=48.6
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l 406 (745)
++++|+.+|.+++|.++.++.......+..... +....+..+.++...|.+++|.++.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 678999999999999999998877766643221 1122334456699999999999999999764
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.03 E-value=0.81 Score=38.79 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhc--cccCcCCHHHHHHHHHH-hhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 338 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 338 r~~~l~~af~~l~~--~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
+.+.+.++|..++. +++|.++.++....++. +... .....+..+.+.++...|.++++.++.++|..++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~-~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNF-LKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhh-ccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34458899999999 79999999987776654 2211 11234677888899999999999999999988776544
No 43
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.51 E-value=0.51 Score=40.31 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhc-cccCcCCHHHHHHHHHH-hhhccCCCCCCH-HHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 340 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 340 ~~l~~af~~l~~-~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
..+.++|+..+. ++++.++.++...++.. +. ..++. .+.+.+...+|.++++.++-+||..+...+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 357889999999 99999999987776665 42 22455 7889999999999999999999987765443
No 44
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.30 E-value=3.2 Score=45.84 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccc
Q 004548 546 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 625 (745)
Q Consensus 546 r~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~ 625 (745)
+.++++-++++..++...+.+.....++.. +. .++.+....+|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----l~--~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAGT----LF--AVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 445666667777777666665554222221 11 222234456788888887775321
Q ss_pred cccCChhhHHHHHHHHhhccCHHHHHHHHHhhhCC-cceeeehhhHHHHHHH
Q 004548 626 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVL 676 (745)
Q Consensus 626 ~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~-~~~~~yFi~~~ii~~~ 676 (745)
..+.++..|++..+..+|+-|.+++ .+. ..++++-+++++.+..
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi-------~p~t~~grl~~i~~ii~Gi~ 208 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDI-------VPVSESARLFTISVIILGIT 208 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCC-------CCCCHHHHHHHHHHHHHHHH
Confidence 1466888999766666666555554 322 3345555555554443
No 45
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.59 E-value=0.098 Score=57.59 Aligned_cols=47 Identities=11% Similarity=0.292 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchh-hhcccccchhhHHHHHHHH
Q 004548 478 VWQEVEFVFGWIYVLEMALKIYSYGFEN-YWRDGQNRFDFLVTWVIVI 524 (745)
Q Consensus 478 ~~~~ie~~f~~if~iE~~lKi~a~G~~~-y~~~~wn~fD~ivvi~~~i 524 (745)
.-+-+|..|.++|.+-+.+|.+|..=+- ||-.-..++|++.+..+++
T Consensus 163 ~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfv 210 (1103)
T KOG1420|consen 163 FTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFV 210 (1103)
T ss_pred hHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchhe
Confidence 3456899999999999999999875322 4445556677776555544
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.37 E-value=1.4 Score=38.03 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhh
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 413 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~~~ 413 (745)
...+.++|+.+|.+++|.++.++....++.. ..+.++...++...|.++++.++.+||..++..+.+.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 3467889999999999999999877665542 2466788889999999999999999999887766543
No 47
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=90.99 E-value=3.4 Score=34.18 Aligned_cols=76 Identities=29% Similarity=0.396 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 004548 239 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 318 (745)
Q Consensus 239 ~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaV 318 (745)
+++++.++.+...+ ++ + ..-.++.+|++..+..+||-|++|+ .|....++ ++- +...+.+..++.++++.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi-~p~t~~gr---~~~-~~~~~~G~~~~~~~~~~ 72 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDI-VPQTPAGR---IFT-IIYMLIGIFLFALFLSV 72 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSS-STSSHHHH---HHH-HHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCc-cCCccchH---HHH-HHHHHHHHHHHHHHHHH
Confidence 34445555455554 22 2 3357889999999999999999998 44433222 333 33444456677777777
Q ss_pred HHHHHH
Q 004548 319 VYDSFK 324 (745)
Q Consensus 319 i~~~f~ 324 (745)
+.+-+.
T Consensus 73 ~~~~l~ 78 (79)
T PF07885_consen 73 LASVLT 78 (79)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766543
No 48
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=90.20 E-value=1.4 Score=37.45 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=52.2
Q ss_pred HHHHHHhhhh-ccccC-cCCHHHHHHHHHH-hhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 341 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 341 ~l~~af~~l~-~~~~~-~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
.+.+||+..+ .+++| .++.++...+++. +.... ....+..+.+.+....|.+++++++-++|..+...+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4688999998 68899 5999998777665 11111 133466778999999999999999999998776544
No 49
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=89.18 E-value=1.1 Score=42.54 Aligned_cols=64 Identities=28% Similarity=0.471 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
++.++.||+..|.+++|.++..........+ -.+++.++.+.++...+.+++|.++.++|.+.+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 5568999999999999999998876655544 356788999999999999999999999997654
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.76 E-value=3 Score=35.87 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=50.7
Q ss_pred HHHHHHhhhh-ccccCc-CCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 341 TLGKAFNLID-NYNVGF-LNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 341 ~l~~af~~l~-~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
.+.++|+.-+ .+++|. ++.++...++..........+.++.+.+.+..++|.++++.++.+||..+...+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3567888888 567774 999987776654211111123366788999999999999999999998876554
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.71 E-value=2.4 Score=36.42 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhc-cc-cCcCCHHHHHHHHHH-hhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 340 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 340 ~~l~~af~~l~~-~~-~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
..+.++|+..+. ++ +|.++.++....++. +.... ..+.+..+.+.++...|.++++.++.++|..++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 457889999987 76 699999998776654 21100 1234667788899999999999999999988766543
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=88.61 E-value=3.4 Score=35.31 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=52.9
Q ss_pred HHHHHHHhhhh-ccccCc-CCHHHHHHHHHH-hhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 340 RTLGKAFNLID-NYNVGF-LNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 340 ~~l~~af~~l~-~~~~~~-l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
..++++|+..+ .+++|. ++.++....++. +.... ....+..+.+.++...|.++++.++.++|..+...+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~-~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFL-DAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34788999997 889994 999988777753 42211 113466788899999999999999999998775543
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.51 E-value=2.3 Score=33.51 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred HHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 343 ~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
+++|+.++.+++|.++.++....+..+ ..+.++.+.++...|.++++.++.+||..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 467888999999999998866655443 23667778899999999999999999988766544
No 54
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=86.30 E-value=4.5 Score=45.32 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc--cc------------hhhhccc
Q 004548 445 TKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRDG 510 (745)
Q Consensus 445 ~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~lKi~a~--G~------------~~y~~~~ 510 (745)
..|+|.++++.+-.++.+-...... ........|..+|.+.-+||.++++|.+-.- |+ ..|+++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNvaFK-nk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs- 295 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVAFK-NKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS- 295 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeeeec-ccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-
Confidence 3477777766665554443221111 1111223455677788889999999987632 33 467664
Q ss_pred ccchhhHHHH
Q 004548 511 QNRFDFLVTW 520 (745)
Q Consensus 511 wn~fD~ivvi 520 (745)
|-++|++..+
T Consensus 296 WFvIDLLSCL 305 (971)
T KOG0501|consen 296 WFVIDLLSCL 305 (971)
T ss_pred HHHHHHHhcc
Confidence 7788887544
No 55
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.08 E-value=13 Score=41.16 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcC---------chhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhh
Q 004548 136 LVYEGITLVILIIHTFFPIT----YEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk~~----~~g---------~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~ 202 (745)
+.+++.+=.+|+++++++.. -.| ++.|+.+..-.+|++.+++. |++.-. . ......|+.
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~----~--~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFK----D--GSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhc----C--CcchHHHHH
Confidence 56799999999999998853 223 26788888888888777663 222211 1 134455677
Q ss_pred hhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004548 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF 253 (745)
Q Consensus 203 r~lR~lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF 253 (745)
|.+|..|+...+..... +.+.|.+..+..+...++++|-+-|-..|
T Consensus 104 Rllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf 149 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYF 149 (536)
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777765543321 33567777777777777777776666655
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=85.38 E-value=5.9 Score=33.79 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHhh-hhccccC-cCCHHHHHHHHHHhh-hccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 341 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEELN-KYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 341 ~l~~af~~-l~~~~~~-~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
.+..+|+. .+.++++ .++.++...++...- ... ..+.++.+.+.++..+|.+++|.++-+||..+...+.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46777887 5565654 899988776655431 111 1234567888999999999999999999987765543
No 57
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=84.46 E-value=3.8 Score=38.64 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
.+.+.+||+..+.+++|+++.++....+..+. .+.+..+.+.+..+.|.++++.++-++|....
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 45689999999999999999998777766653 45568888999999999999999888876553
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=84.15 E-value=3.6 Score=31.02 Aligned_cols=60 Identities=30% Similarity=0.497 Sum_probs=46.7
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l 406 (745)
+.++|...+.+.+|.++.++.....+.+. +..+......++...+.++++.++.++|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 35678888888999999998776665542 4556777788999999989999999888654
No 59
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.98 E-value=51 Score=37.64 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHhcC---------chhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhh
Q 004548 136 LVYEGITLVILIIHTFFP-----ITYEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 201 (745)
Q Consensus 136 ~~~e~~~~~~f~~E~~lk-----~~~~g---------~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~ 201 (745)
+++|++|=+++++++++- ....| .+.|.++..-.+|++.++.. |++..... ....+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--dllY~~~G------~~p~w-- 333 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--DLLYLFFG------FNPMW-- 333 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--HHHHHHhc------cchhh--
Confidence 678999999999999742 11223 26799998888898766653 33222110 11223
Q ss_pred hhhhHHHHHhhcc---HHHHHHHHH--HHHhHHHHHHHHHHH---HHHHHHHHHHHHHhcccCccccccccchHHH----
Q 004548 202 APYIRVVFFILNI---RQLRDTLFV--LAGMLGTYLNVLALG---LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTT---- 269 (745)
Q Consensus 202 ~r~lR~lrli~~~---~~lr~~~~~--l~~~~~~i~~v~~l~---~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s---- 269 (745)
|+=|.|+.-..+ +.+-.++.. +.+.+++..+++..+ .++.+-.| ++|-+|.+ ..-||+-|++
T Consensus 334 -R~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~S--ayqglG~~---rWVydg~Gn~YiRC 407 (815)
T KOG0499|consen 334 -RANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWAS--AYQGLGTT---RWVYDGEGNEYIRC 407 (815)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHH--hhcccccc---eeEEcCCCCceeee
Confidence 444444444333 333333311 113334444333332 33333333 66767643 3445555554
Q ss_pred -HHHHHHHHhcCCChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 270 -LYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDS 322 (745)
Q Consensus 270 -~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~ 322 (745)
.+++=.+.|.-|.|+-- ...-+-|...-.+++.|++++++|-+=|-
T Consensus 408 yyfa~kt~~tiG~~P~P~-------~~~E~Vf~~~~w~mGVFvFslliGQmRDv 454 (815)
T KOG0499|consen 408 YYFAVKTLITIGGLPEPQ-------TLFEIVFQLLNWFMGVFVFSLLIGQMRDV 454 (815)
T ss_pred hhhHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444556666666641 11112233333445555666666655443
No 60
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=83.76 E-value=4.4 Score=38.24 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=55.9
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
..+++||+..+.+++|.++.++....++.+. ...+..+...+....|.++++.++.++|..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4578999999999999999998877777663 34577888999999999999999999999887643
No 61
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=82.80 E-value=7.1 Score=36.74 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
..+.+||+..|.+.+|.++.........+| .+.++.++...+..+.|..+++.++.+||..++
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 456789999999999999998877777777 478899999999999999999999999997654
No 62
>PTZ00183 centrin; Provisional
Probab=81.95 E-value=5.3 Score=37.50 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
..+.++|+.++.+++|.++.++.......+ .+.++..+...++..+|.++++.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999999998876655443 255788888999999999999999999997664
No 63
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=79.42 E-value=3.4 Score=50.12 Aligned_cols=141 Identities=16% Similarity=0.258 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCC
Q 004548 551 ARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND 630 (745)
Q Consensus 551 ~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~ 630 (745)
|-...++-+..-++.+|.++.++-+-.+.+.--++++.++.|.|.++..+.|..-....+++.. .+ ..=|+
T Consensus 4790 ffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~-pd--------mkcdd 4860 (5019)
T KOG2243|consen 4790 FFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDE-PD--------MKCDD 4860 (5019)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCC-CC--------ccchh
Confidence 4455666666777888888887777777776677888899999999999999754332211111 11 12223
Q ss_pred hhhHHHHHHHHhh----ccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 004548 631 YPNGMVTLFNLLV----MGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 702 (745)
Q Consensus 631 f~~a~~tLf~i~t----~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 702 (745)
....+ +|.+-+ |+|-++-.++-+...-..+-.+|=+.|+++..+|++.+.-++|+++|-+..+..+..++
T Consensus 4861 mltcy--lfhmyvgvragggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvke 4934 (5019)
T KOG2243|consen 4861 MLTCY--LFHMYVGVRAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKE 4934 (5019)
T ss_pred hHHHH--hhheeeeeecCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHHh
Confidence 22221 232222 23332222211100001345667788888899999999999999999887665554443
No 64
>PTZ00184 calmodulin; Provisional
Probab=78.09 E-value=7.6 Score=35.84 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=50.0
Q ss_pred HHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 341 ~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
.+..+|+..+.+++|.++.++....+... .+..+..+.+.++...|.++++.++.+||..+.
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 35678999999999999999877665543 245677888889999999999999999987653
No 65
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=77.63 E-value=11 Score=35.77 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~ 411 (745)
+.+.+||+.++.+++|.++.......++.+. -..+......++.+.+. +.+.++-++|...+....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5578999999999999999998776665442 22456777889999998 888999999988776543
No 66
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=76.03 E-value=14 Score=33.31 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 336 ~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
...+..+..+|..+|.+++|.++.++...+. + ..........+...|.++++.|+.+||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456678999999999999999998754332 1 1123455678889999999999999998775
No 67
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=75.67 E-value=16 Score=38.40 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhH----HhhhcCchhHHHHHHHH
Q 004548 229 GTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI----PAYKASRWYCLFFVLYV 304 (745)
Q Consensus 229 ~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~----~~~~~~~~~~ifFi~~~ 304 (745)
+...+++++++..-++-...|...|..- ++..+||++ +-.|+.+||-|.+|.-. .++...+.+..|=+.|+
T Consensus 155 ~S~~~l~~i~~~~~~~~i~~gaa~fs~~-E~Wsyfds~----YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI 229 (350)
T KOG4404|consen 155 VSVYNLVLILFTACILLICCGAAMFSSV-EGWSYFDSY----YYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI 229 (350)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHhhcc-cCcchhhhh----heeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence 4455555544443333333477777754 356777755 45577779999999842 34455556665656666
Q ss_pred HHHHHHH
Q 004548 305 LIGVYFV 311 (745)
Q Consensus 305 ~l~~~~~ 311 (745)
++|.-++
T Consensus 230 L~Gl~vi 236 (350)
T KOG4404|consen 230 LLGLCVI 236 (350)
T ss_pred HHHHHHH
Confidence 6665443
No 68
>PTZ00184 calmodulin; Provisional
Probab=75.13 E-value=14 Score=33.99 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=50.2
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
+.++++|..++.+++|.++.++.......+. ...+..+...++...|.++++.++.++|...+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4577889999999999999999776655442 223466778899999999999999999976544
No 69
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=74.96 E-value=6.5 Score=38.73 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=52.0
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHhhhccCC---C---CCCHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL---P---NISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~---~---~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~ 409 (745)
+.-+|++-|.+++|.++++++...++.+.+.... | .-.....+.++...|.++|+.++.+||.+.+.+
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4567999999999999999988877765544322 2 123345578999999999999999999877643
No 70
>PTZ00183 centrin; Provisional
Probab=73.46 E-value=16 Score=34.09 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
+.+.++|..++.+++|.++.++....++.+. ...+......++...|.++++.++.+||...+.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4578889999999999999999777665442 224566788899999999999999999977654
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=73.29 E-value=17 Score=31.08 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=37.2
Q ss_pred CcCCHHHHHHHHH-HhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 355 GFLNKEQCIKLFE-ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 355 ~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
+.+++.+...+++ ++...... +.++...+.++..+|.++|+.++-.||..+.-.+
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4566666555442 33332222 2366778899999999999999999998775543
No 72
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=72.48 E-value=28 Score=29.43 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=40.3
Q ss_pred ccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 353 NVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 353 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
.++.++.++...++............+..+.+.++...|.++++.++.++|..++..+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3578888887776642211110012347888999999999999999999998876544
No 73
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=72.23 E-value=64 Score=35.73 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccchHHHHHHHHHHHhcCCChhhhHHhhhcCchhHHH
Q 004548 220 TLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLF 299 (745)
Q Consensus 220 ~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~if 299 (745)
+++++...-|... ++.+.+.++++-|++..+-=....+.. .=.|+.+|+|..-+.+-+.||+|+ .|-...++..++.
T Consensus 244 V~Kt~M~~~Pg~v-L~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDi-VP~TycGr~v~l~ 320 (489)
T KOG3684|consen 244 VLKTLMTICPGTV-LLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDI-VPNTYCGRGVALL 320 (489)
T ss_pred hHHHHHHhCchHH-HHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCcc-cCCccccchHHHH
Confidence 4444444444332 233445555555555554332211111 335788999999999999999997 7777777766544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 300 FVLYVLIGVYFVTNLILAVVYDSFKS 325 (745)
Q Consensus 300 Fi~~~~l~~~~~lnl~iaVi~~~f~~ 325 (745)
- -+.+-..-.+.+|||-.+-.-
T Consensus 321 t----GivGa~~sallvAvisRKLeL 342 (489)
T KOG3684|consen 321 T----GIVGAGCSSLLVAVIARKLEL 342 (489)
T ss_pred h----hhhhhhHHHHHHHHHHHHHHH
Confidence 3 333445678999999877653
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=71.49 E-value=3.3 Score=27.17 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.0
Q ss_pred HHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 383 FELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 383 ~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
.+.++...|++++|.++.+||...+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 35678899999999999999987754
No 75
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=70.19 E-value=10 Score=28.59 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 376 PNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 376 ~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
-+++......+|...|+++++.++.+||.+.++.+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45677888899999999999999999999887754
No 76
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=69.34 E-value=10 Score=28.48 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=36.0
Q ss_pred cCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHH
Q 004548 354 VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 354 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
+|.++.++....+..+. .+..++++.+.++...|.+++|.++.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~g----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTT----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 35566666544443221 122788899999999999999999999997654
No 77
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=67.13 E-value=13 Score=36.52 Aligned_cols=66 Identities=26% Similarity=0.420 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHH----HHHhhhcccCCCCCCChhhhHHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEF----ELIFDELDDTHDFKINLDEFADLC 407 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----~~l~~~~d~~~~~~~~~~ef~~l~ 407 (745)
.+++=||++.|.+++|.++.++....++.+-.... . .+.+.. +.++.+.|.++||+|+.+||....
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~-~-~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEND-D-MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-c-chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 46788999999999999999997776665533211 1 123333 466788999999999999987654
No 78
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=66.29 E-value=50 Score=28.01 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=47.3
Q ss_pred HHHHHhhhhc-cc-cCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 342 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 342 l~~af~~l~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
+.+.|+.-+. ++ +|.++.++....+..... -..+.+.++.+.++..+|.+++++++.+||..+...+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~--lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELT--IGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3445555554 34 789999887666542111 1345688899999999999999999999997765544
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=65.73 E-value=25 Score=30.95 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
++.....|+.++. ++|.++.++....+.. .+++.+....++.-.|.+++|.++.+||.-...-+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-------S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK-------SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH-------TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-------cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4456778888875 5788999887665432 35677888999999999999999999997755444
No 80
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=65.16 E-value=25 Score=38.21 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHH
Q 004548 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 405 (745)
Q Consensus 338 r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~ 405 (745)
++..+.+-|+.+|.+.+|.++.++.....+.+ .-+++.++.+.++...|++++..++.+|+.+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 34557788999999999999988755544444 3468899999999999999999999999865
No 81
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.75 E-value=1.5e+02 Score=33.33 Aligned_cols=66 Identities=23% Similarity=0.544 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHh----hccc---------hhhhcccccchhhHHHH
Q 004548 455 LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIY----SYGF---------ENYWRDGQNRFDFLVTW 520 (745)
Q Consensus 455 illn~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~if~iE~~lKi~----a~G~---------~~y~~~~wn~fD~ivvi 520 (745)
++-|.+.+++....+.-+..+-..|-.+|+.+=.+|+++++++.- -.|. +.|+++.--.+|.+.++
T Consensus 7 vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 7 VLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 344554444422121222234457788999999999999998876 2342 56777766677766543
No 82
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=64.67 E-value=29 Score=32.62 Aligned_cols=70 Identities=29% Similarity=0.420 Sum_probs=44.7
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccC------------CC---------------CCCH-HHHHHHhhhcc
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT------------LP---------------NISR-EEFELIFDELD 391 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~------------~~---------------~~~~-~~~~~l~~~~d 391 (745)
+.+.+||.++|..++|+++++.....+..+.+..+ .| ...+ +..-..|...|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 45789999999999999999887766665544310 00 0011 11123455577
Q ss_pred cCCCCCCChhhhHHHHHH
Q 004548 392 DTHDFKINLDEFADLCNA 409 (745)
Q Consensus 392 ~~~~~~~~~~ef~~l~~~ 409 (745)
+++.|+++.+.+.+++..
T Consensus 112 ~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTT 129 (171)
T ss_pred ccCCCccCHHHHHHHHHH
Confidence 778888887777666543
No 83
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.27 E-value=2.1e+02 Score=33.04 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----hc-cc---------hhhhcccccchhhHHHH
Q 004548 476 QSVWQEVEFVFGWIYVLEMALKIY----SY-GF---------ENYWRDGQNRFDFLVTW 520 (745)
Q Consensus 476 ~~~~~~ie~~f~~if~iE~~lKi~----a~-G~---------~~y~~~~wn~fD~ivvi 520 (745)
-..|-+.|++|-+||++++++=-- .. |. +.|.++.--.+|++.++
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiL 318 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSIL 318 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhh
Confidence 357888999999999999874211 11 21 67888877788887654
No 84
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=56.78 E-value=1.5e+02 Score=33.91 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 004548 268 TTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLI 315 (745)
Q Consensus 268 ~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~ 315 (745)
.|++--...+|+.|++.+ .|..+. --+|-+..+++|+.+--.+|
T Consensus 426 ssLYfTMt~mttvGFGNi-A~~TD~---EKiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 426 SSLYFTMTCMTTVGFGNI-APNTDN---EKIFGVCMMIIGALLYATIF 469 (971)
T ss_pred hhhhhhhhhhhccccccc-CCCccH---HHHHHHHHHHHHHHHHHHHH
Confidence 344444456677777766 222222 24677788888776655555
No 85
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=56.01 E-value=76 Score=34.89 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 336 ~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
.+-+..++..|+.+|.+..|.++-++.....+-+.++- ...++.++...+-...|-++||+++..||.+.....
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 34456688899999999999999888666555555443 355788889999999999999999999997765543
No 86
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=56.00 E-value=1e+02 Score=33.32 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=43.5
Q ss_pred ccccchHHHHHHHHHHHhcCCChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 261 MVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (745)
Q Consensus 261 ~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~ 325 (745)
.+.++|.++++--.++.||-|++.. + ....-..+.+.+..-.+.+.++..+.+|+++..|+.
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-~--~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-Y--PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-E--B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ecccchhhheeEEEEEEEEeccCCc-c--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999773 1 123334566667777888888889999999887764
No 87
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=55.32 E-value=2.7 Score=43.05 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.5
Q ss_pred CcHHHHHHHhccccchHHHHHHHHH
Q 004548 431 HSPFSEKLKAFIRSTKFGYMISIIL 455 (745)
Q Consensus 431 ~~~~r~~~~~iv~~~~f~~~i~~ii 455 (745)
+..+|+.|+++|+|+||+.+|+++|
T Consensus 215 W~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 215 WWNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHHhhheeeecccchhheeeeeC
Confidence 3557999999999999999988764
No 88
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=53.18 E-value=16 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEE 368 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~ 368 (745)
++++|+..|.+++|.++.++....++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567899999999999999887665543
No 89
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=50.35 E-value=58 Score=35.59 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHH
Q 004548 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 405 (745)
Q Consensus 336 ~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~ 405 (745)
++|+...+.-|+.+|.+++|.++..+..+.+..+. .|+...+-...+++..|.+.++.+|-+||..
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 44555667788899999999998888665544443 2334444445555666666666666555543
No 90
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=49.33 E-value=23 Score=43.62 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cCccccccccchHHH-HHHHHHHHhc
Q 004548 208 VFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE-------DTVQGNMVFTSFGTT-LYQMFVLFTT 279 (745)
Q Consensus 208 lrli~~~~~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~-------~~~~~~~~F~~~~~s-~~~lf~~~t~ 279 (745)
+-+..-++.+|.++.++.+.-+.+.-...++...+++|.+++..+|. |.+++...-|+..+. ++.+++-+-.
T Consensus 4796 ldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvra 4875 (5019)
T KOG2243|consen 4796 LDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVRA 4875 (5019)
T ss_pred HHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeeec
Confidence 33444556666666666666566655666788889999999999996 223334445554443 3344443322
Q ss_pred -CCChhhh-HHhhhcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 280 -SNNPDVW-IPAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (745)
Q Consensus 280 -~~w~dv~-~~~~~~~~~~-~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~ 329 (745)
-|-+|-. .|+-+....+ .+|=|.|+++.-.+++.+.-+.|++.|-+....
T Consensus 4876 gggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdq 4928 (5019)
T KOG2243|consen 4876 GGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ 4928 (5019)
T ss_pred CCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhH
Confidence 1223322 2443332222 344455555555668888899999999876554
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=48.26 E-value=96 Score=34.27 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~ 409 (745)
+..++.+|+..|.+++|.++.++... .+.++..+|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 56678999999999999999987421 356789999999999999999887654
No 92
>PLN02964 phosphatidylserine decarboxylase
Probab=48.23 E-value=55 Score=38.50 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 004548 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (745)
Q Consensus 341 ~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~ 409 (745)
.++++++..|.+++|.++.++...++..+. ...+.++...+|...|.+++|.++.+|+.++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 466788888999999999998777766542 2346677899999999999999999999877543
No 93
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=45.44 E-value=18 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 383 FELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 383 ~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
...+|...|.++++.++.+|+..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 35678889999999999999987765
No 94
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=43.26 E-value=24 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHHhhhhccccCcCCHHHHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIK 364 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~ 364 (745)
++++|+.+|.+++|.++.++...
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 45689999999999999987654
No 95
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.25 E-value=2.5e+02 Score=30.60 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcccc
Q 004548 590 VQCIYCSLGVQIFGGIV 606 (745)
Q Consensus 590 ~~~ifAi~G~~lF~g~~ 606 (745)
++.+.++++-.+-+|-.
T Consensus 99 ~~~v~gi~~~~~q~g~~ 115 (363)
T COG1377 99 VLLVVGLLANILQVGFL 115 (363)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 33455555544545543
No 96
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=41.38 E-value=1.9e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=17.3
Q ss_pred CChhhhHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 281 NNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 328 (745)
Q Consensus 281 ~w~dv~~~~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~ 328 (745)
+|-+.+..-...+++..++-++ ++ +..+|+.-.+=++.-..+
T Consensus 6 ~w~~~~v~~vAkdP~~Fl~~vl-l~-----LtPlfiisa~lSwkLaK~ 47 (74)
T PF15086_consen 6 AWASYIVEWVAKDPYEFLTTVL-LI-----LTPLFIISAVLSWKLAKA 47 (74)
T ss_pred HHHHHHHHHHHcChHHHHHHHH-HH-----HhHHHHHHHHHHHHHHHH
Confidence 3444443333455554433322 22 344444444445543333
No 97
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=40.37 E-value=1.7e+02 Score=23.84 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHhhccCHHHHHHHHHhhhCC-cceeeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 004548 629 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 691 (745)
Q Consensus 629 ~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~-~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~ 691 (745)
.++.+|++-.+..+|+-|++|+ .+. .+.++ +.....+.+..++.++++.+.+-+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi-------~p~t~~gr~-~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDI-------VPQTPAGRI-FTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSS-------STSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCc-------cCCccchHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888766666666655554 322 33344 4456666667788888888877654
No 98
>PF14658 EF-hand_9: EF-hand domain
Probab=39.28 E-value=88 Score=25.08 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=45.0
Q ss_pred HHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCC-CCCChhhhHHH
Q 004548 345 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADL 406 (745)
Q Consensus 345 af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~-~~~~~~ef~~l 406 (745)
+|++-|.++.|.+.-.+...+++.+.. +.-+.++.+.+..++|.++. +.++.+.|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 678888888999888887777776643 23356788889999999987 88998888654
No 99
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.79 E-value=1.7e+02 Score=32.29 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccC-----CCCC--------------------------------
Q 004548 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT-----LPNI-------------------------------- 378 (745)
Q Consensus 336 ~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~-----~~~~-------------------------------- 378 (745)
..++..+.++|+..|.++.|.++-.+|..-++.+.+..- .|+.
T Consensus 460 ~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred HhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 334567889999999999999888887665554433210 0000
Q ss_pred -----CHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhh
Q 004548 379 -----SREEFELIFDELDDTHDFKINLDEFADLCNAIALR 413 (745)
Q Consensus 379 -----~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~~~ 413 (745)
.++..+.+|+.+|.++.|.++.+||.+.++.+...
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 11233457778888888999999998888766543
No 100
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.85 E-value=71 Score=23.09 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 004548 671 YLITVLLLLNLVIAFVLEAFFAEMELESSEK 701 (745)
Q Consensus 671 ~ii~~~i~lnLfvavi~e~F~~~~~~~~~~~ 701 (745)
.+++.++++.+|.-+=+.-|+...+-...++
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567778888887666666766555444433
No 101
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=35.37 E-value=7.7e+02 Score=28.65 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=15.1
Q ss_pred HHHHHHHH---HHHHHhhhcccccc
Q 004548 84 DYIWSLNY---FALIVLNFLEKPLW 105 (745)
Q Consensus 84 ~~~~~~~~---~~ll~l~~~e~p~~ 105 (745)
.|.|-+.+ +.+.+++|+..|..
T Consensus 13 fw~wnlt~~~l~~~~i~pf~~~p~i 37 (952)
T TIGR02921 13 FWFWNLTFASLTGLGILPFFGLPAI 37 (952)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHH
Confidence 34455555 45578999999986
No 102
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=33.15 E-value=1.8e+02 Score=31.53 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=41.6
Q ss_pred cccCChhhHHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004548 626 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 695 (745)
Q Consensus 626 ~nF~~f~~a~~tLf~i~t~~~W~~im~~~~~~~~~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~ 695 (745)
.|.++|..|++--.+..|+=|++.. ..++.-....+.++.-.+.+.++..+.+|++.-.|+.-..
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ecccchhhheeEEEEEEEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5788999999888888777665431 1122223445556667778888888888998888876443
No 103
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=30.87 E-value=1.1e+02 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=20.5
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004548 663 TLAYFVSFYLITVLLLLNLVIAFVLEAFFA 692 (745)
Q Consensus 663 ~~~yFi~~~ii~~~i~lnLfvavi~e~F~~ 692 (745)
+..-|.++..++.|+++=+..+-|.+.=..
T Consensus 14 ~K~~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 14 TKIMFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455566777777777777777777765443
No 104
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=30.60 E-value=84 Score=28.99 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhh
Q 004548 675 VLLLLNLVIAFVLEAFFAEMELESS 699 (745)
Q Consensus 675 ~~i~lnLfvavi~e~F~~~~~~~~~ 699 (745)
++.++|.|+|++.-.|....+..++
T Consensus 65 giyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 65 GIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHhCCCCcccHhhhcc
Confidence 4459999999998888766444433
No 105
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=30.00 E-value=1.6e+02 Score=33.33 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
.+.+.++|..++ +++|+++..+....+.+.+... .....++.+.+..+.+.+.+++++.|+|..++-
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345778899999 8999999988777776654432 334566777888888889999999999988653
No 106
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=28.03 E-value=2.6e+02 Score=27.65 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=45.7
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
....|.+.|.+.+|+++..+...++++|. .|+- ---...+..+.|.+.+++++..||.-+..
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg----apQT-HL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLG----APQT-HLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhC----Cchh-hHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 56788999999999999998877777663 2331 11224567788999999999888865543
No 107
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=27.65 E-value=2.6e+02 Score=26.50 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHH
Q 004548 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (745)
Q Consensus 340 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l 406 (745)
..+..||...|+++.|.++.+....++... .-+.+.++.+.++...-.+..|.++-.+|..+
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 457789999999999999998876665443 34578888888888777766777776665443
No 108
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=26.92 E-value=2.4e+02 Score=27.88 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhhh
Q 004548 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 414 (745)
Q Consensus 342 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~~~~~~ 414 (745)
.+..|+..|.+++|.++..+....+..+. +....++.+..|...|.+++|.|+.+|+.++.+++-...
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~ 133 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMT 133 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHc
Confidence 34567777888899998877555444332 223345556678899999999999999988887765443
No 109
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=23.40 E-value=3.3e+02 Score=26.01 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 004548 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (745)
Q Consensus 338 r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~ 408 (745)
.++..+.||+..+.++.+.++-+..+..++.+. -...+++...+..+.|+.+.++++.++|.....
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 356788999999999999999887544444332 123456677788889999999999888876643
No 110
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=22.55 E-value=5.3e+02 Score=27.98 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004548 668 VSFYLITVLLLLNLVIAF 685 (745)
Q Consensus 668 i~~~ii~~~i~lnLfvav 685 (745)
..+.++....++-+++|+
T Consensus 181 ~~~~l~~~~~~~~~via~ 198 (342)
T TIGR01404 181 LLKLLILVCLGFFLVVGL 198 (342)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444344444443
No 111
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.67 E-value=9.3e+02 Score=26.36 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhcccc
Q 004548 592 CIYCSLGVQIFGGIV 606 (745)
Q Consensus 592 ~ifAi~G~~lF~g~~ 606 (745)
.+.++++--+-+|-.
T Consensus 89 ~~~~i~~~~~Q~G~~ 103 (361)
T PRK08156 89 LLAGALPTLLQTRFV 103 (361)
T ss_pred HHHHHHHHHHhcCce
Confidence 344454444434443
No 112
>PLN02964 phosphatidylserine decarboxylase
Probab=20.76 E-value=2.6e+02 Score=33.11 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHH---HHHHhhhcccCCCCCCChhhhHHHHHHH
Q 004548 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 410 (745)
Q Consensus 339 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~~~d~~~~~~~~~~ef~~l~~~~ 410 (745)
.+.+.++|+.+|.+++|.+ ....++.+.. ...+..+ .+.++...|.++++.++.+||..++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3567889999999998875 2223333321 1122333 4778889999999999999998887653
Done!