Query 004549
Match_columns 745
No_of_seqs 139 out of 532
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:24:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004549.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1854-1857//hhsearch_pdb/004549hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 1.0 1 1 116.6 18.6 127 611-742 304-441 (482)
2 1d2e_A Elongation factor TU (E 1.0 1 1 77.7 18.3 210 78-303 2-253 (397)
3 3sjy_A Translation initiation 1.0 1 1 77.5 21.2 205 76-293 5-246 (403)
4 1kk1_A EIF2gamma; initiation o 1.0 1 1 75.0 18.1 203 76-292 7-252 (410)
5 3mca_A HBS1, elongation factor 1.0 1 1 73.1 9.6 172 122-305 254-453 (592)
6 3avx_A Elongation factor TS, e 1.0 1 1 72.5 19.8 219 75-309 292-550 (1289)
7 1s0u_A EIF-2-gamma, translatio 1.0 1 1 71.0 17.2 204 76-292 5-250 (408)
8 2c78_A Elongation factor TU-A; 1.0 1 1 67.1 19.7 214 76-304 8-272 (405)
9 3izy_P Translation initiation 1.0 1 1 56.8 4.3 208 78-303 3-224 (537)
10 2elf_A Protein translation elo 1.0 1 1 56.0 14.8 129 81-226 23-159 (370)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=116.57 Aligned_cols=127 Identities=9% Similarity=0.053 Sum_probs=91.5
Q ss_pred CCCCCCCCEEEEEEEEEEEEEECCCCC---CCCCCCCCEEECCCCCCCE--EEEEEEEECCCCCCCEEEEEECCC-CCCC
Q ss_conf 777777760899962111111011004---6899984044113689944--799999104789933899993699-9998
Q 004549 611 DAPIKAKEELIFHVGFRQFVARPIFSS---DNMNSDKHKMERFLHAGCF--SVASIYAPICFPPLPLIVLKSADG-GVAP 684 (745)
Q Consensus 611 ~~~lKSkdpLif~~G~RRF~~~PifS~---~~~~~~k~K~~rf~~~~~~--~vAt~ygPi~~p~~pvl~f~~~~~-~~~~ 684 (745)
+.||++..++.++||..+..+.-..-. -|.+ +.++..+++.++.. |.-.+-.|+++.+-+-++++.... ....
T Consensus 304 ~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~-~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~ 382 (482)
T 1wb1_A 304 KYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKT-EENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL 382 (482)
T ss_dssp CSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSC-CCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred CCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCC-CCCCCCHHHCCCCEEEEEEECCCCEEECCCCEEEEEECCCCCCCC
T ss_conf 7556799779999864299999999852311455-554440233499878888980765896689869999777776675
Q ss_pred EEEEEEEEECCCCCCEEEEEEEEEEEEEE-----EEEEEEEEECCCCCHHHHCCCCEEEEEEE
Q ss_conf 59676556225863015774899732279-----86414999315789312057530127988
Q 004549 685 AVAAVGSLRSIDPDRIILKKIVLTGYPQR-----VSKLKAIVRYMFHNPEDVRWFKVKRALFV 742 (745)
Q Consensus 685 ~l~atG~vl~~d~~riIvKrivLtG~P~K-----I~K~tA~Ir~MFfn~~DV~wFKpvel~~~ 742 (745)
+.+|.|.|+++.+ +|+++|...+.| +++++|+||+||++..|+.||+..+++++
T Consensus 383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~ 441 (482)
T 1wb1_A 383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIE 441 (482)
T ss_dssp CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEET
T ss_pred EEEEEEEEEECCC----CHHCEEEEHHHCCCCEEECCCEEEEECCCCCHHHHHHHCCCEEEEC
T ss_conf 6745799986366----1011024044305837874987999757565134677559399976
No 2
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=1.00 E-value=1 Score=77.69 Aligned_cols=210 Identities=14% Similarity=0.082 Sum_probs=141.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCC--------------CC-CCCEEEE-----ECCCEEEEEEEECCCCC---
Q ss_conf 9879999448986693128999998540289--------------99-7525997-----06803337999489999---
Q 004549 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG--------------TG-ALSSTVS-----SSKYRLRTSVLQAPHGD--- 134 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~--------------~~-~g~~tv~-----~~r~k~Rltfi~~~~~d--- 134 (745)
++.-|+++|..+.+.. +|++.|........ .+ ...+|+. ....+.+++|+.+| .-
T Consensus 2 ~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtp-G~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKT-TLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCP-GHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHH-HHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECS-SHHHH
T ss_pred CEEEEEEEECCCCCHH-HHHHHHHCHHHHCCCCCCCHHHHHHCCHHHHHCCCEEEEEEEEECCCCEEEEEEECC-CHHHH
T ss_conf 8489999948899989-999999570322586543103444258778865968984567862697379999899-86999
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHH-HHHHHHHHHHCCC
Q ss_conf 6778768732036899840888532333322475799999998750998558973059963-1305-9999998742023
Q 004549 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSLTS 212 (745)
Q Consensus 135 l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~-~kk~-~~~kK~lk~~f~~ 212 (745)
...|+..++.||.+||++|++.| ....+.+.+..++..|+|.++.|++..|.. .... ..++..++.++..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999657359999999989999--------8878999999999849981899997865688788999999999999987
Q ss_pred C-CC-CCCEEEEECCHH-----------H-HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 2-58-998269817977-----------8-99999998632546873235888179873574158899998549999999
Q 004549 213 E-FP-EDCKFYAADTKD-----------E-LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL 278 (745)
Q Consensus 213 e-f~-~~~Klf~l~~~~-----------e-~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv 278 (745)
. +. ....+++.|..+ . +..|+..|...-+.|..+.+...+|.++++-..+. .-.+++|.|
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~------~G~v~~g~v 225 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG------RGTVVTGTL 225 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETT------TEEEEEEEC
T ss_pred CCCCCCCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECC------CEEEEEEEE
T ss_conf 69982467199946354004568876678699999998874789987887857999999999599------368999999
Q ss_pred ECCCCCCCCEEEECCCCCE---EECEEE
Q ss_conf 1779999990884788750---210011
Q 004549 279 RAHCLSVNQLVHISGAGDF---QLGKIE 303 (745)
Q Consensus 279 RG~~l~~n~lVHIpG~GDF---qi~~I~ 303 (745)
....++++..|.|.|.|++ .|.+|.
T Consensus 226 ~~G~l~~gd~v~~~~~~~~~~~~V~~i~ 253 (397)
T 1d2e_A 226 ERGILKKGDECEFLGHSKNIRTVVTGIE 253 (397)
T ss_dssp CBSEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred EECEEECCCEEEEECCCCCEEEEEEEEE
T ss_conf 6046827999999179997279998987
No 3
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=1.00 E-value=1 Score=77.50 Aligned_cols=205 Identities=12% Similarity=0.105 Sum_probs=142.2
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC--C--C--------------EEEEE----------CCCEEEEEE
Q ss_conf 999879999448986693128999998540289997--5--2--------------59970----------680333799
Q 004549 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--L--S--------------STVSS----------SKYRLRTSV 127 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g--~--------------~tv~~----------~r~k~Rltf 127 (745)
..+++.|+++|.++.+.. +| ++.|+...... + . ++... ...+++++|
T Consensus 5 ~~~~~~I~vvG~~~~GKS-TL----i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKT-TL----VQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCEEEEECSTTSSHH-HH----HHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCHH-HH----HHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 699738999999999999-99----9988476344446755542210446665341111454222465444444553999
Q ss_pred EECCC--CCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHH
Q ss_conf 94899--9967787687320368998408885323333224-7579999999875099855897305996-313059999
Q 004549 128 LQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLK 203 (745)
Q Consensus 128 i~~~~--~dl~~~LD~aKvADlVlllidas~g~~~~~~~~f-d~~g~e~L~~L~aqGlP~vigvl~~L~~-~~kk~~~~k 203 (745)
+.+|- .-...|+..++.||.+||++|++.+ + ...+.+.+..+...|.+.++.|++..|. +........
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~--------~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEP--------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEEEECCCC--------CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 98999689999999888659999999989988--------8857899999999971999789999786666567899999
Q ss_pred HHHHHHCCCCCCCCCEEEEECC--HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCC--CCCCCCCEEEEEEEEE
Q ss_conf 9987420232589982698179--77899999998632546873235888179873574158--8999985499999991
Q 004549 204 KMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD--DCNSGKCTLLLHGYLR 279 (745)
Q Consensus 204 K~lk~~f~~ef~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~--~~~~~~~~l~v~GyvR 279 (745)
+.++.++......+..+|++|. ...+..|+..|...-+.+-...+..+.|.+++.-.... .+.+..+..+++|.|.
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~ 231 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSII 231 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 99999988517899879999899885969999999985788777889992899999996158876334676758999997
Q ss_pred CCCCCCCCEEEE-CC
Q ss_conf 779999990884-78
Q 004549 280 AHCLSVNQLVHI-SG 293 (745)
Q Consensus 280 G~~l~~n~lVHI-pG 293 (745)
...++++..|+| |+
T Consensus 232 ~G~~~~gd~v~~~p~ 246 (403)
T 3sjy_A 232 QGLFKVDQEIKVLPG 246 (403)
T ss_dssp ESCEETTCEEEEEEE
T ss_pred ECEEECCCEEEEECC
T ss_conf 477855998999179
No 4
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=1.00 E-value=1 Score=74.99 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=137.3
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC----CC--CCEEE-------EE------------------CC---C
Q ss_conf 9998799994489866931289999985402899----97--52599-------70------------------68---0
Q 004549 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT----GA--LSSTV-------SS------------------SK---Y 121 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~----~~--g~~tv-------~~------------------~r---~ 121 (745)
..+.+.|+|+|..+.+.. +| +..|+.... .+ ..+|+ .. ++ .
T Consensus 7 ~~~~~~I~iiG~~~~GKS-TL----i~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~ 81 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKT-TL----TKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEF 81 (410)
T ss_dssp CSEEEEEEEECSTTSSHH-HH----HHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEE
T ss_pred CCCCCEEEEECCCCCCHH-HH----HHHHHCCCCCCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 789609999999899899-99----9887497655670453278589986435201245554420125656555766533
Q ss_pred EEEEEEEECCCCC---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEECCCCC-CH
Q ss_conf 3337999489999---67787687320368998408885323333224-7579999999875099855897305996-31
Q 004549 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL 196 (745)
Q Consensus 122 k~Rltfi~~~~~d---l~~~LD~aKvADlVlllidas~g~~~~~~~~f-d~~g~e~L~~L~aqGlP~vigvl~~L~~-~~ 196 (745)
+.+++|+.+| .. ...|+..+..||.+||++|++.| + ...+.+.|..++..|++.++.|++.+|. +.
T Consensus 82 ~~~i~iiDtP-Gh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 82 VRRVSFIDAP-GHEALMTTMLAGASLMDGAILVIAANEP--------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp EEEEEEEECS-SHHHHHHHHHHCGGGCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 2079999899-8499999998426228899999977878--------887569999999998399838999977347998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECC--HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCC--CCCCCEE
Q ss_conf 30599999987420232589982698179--7789999999863254687323588817987357415889--9998549
Q 004549 197 KKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTL 272 (745)
Q Consensus 197 kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l 272 (745)
.........++.++......+..+|++|. ...+..|+..|...-+.|..+.+..+.|.+++.-...... .+...-.
T Consensus 153 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~ 232 (410)
T 1kk1_A 153 EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGG 232 (410)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
T ss_conf 99999999999999731867874999547789899999999997588975456898379999997216888633478447
Q ss_pred EEEEEEECCCCCCCCEEEEC
Q ss_conf 99999917799999908847
Q 004549 273 LLHGYLRAHCLSVNQLVHIS 292 (745)
Q Consensus 273 ~v~GyvRG~~l~~n~lVHIp 292 (745)
+++|.|....++++..|.+.
T Consensus 233 v~~g~v~~G~l~~gd~v~~~ 252 (410)
T 1kk1_A 233 VLDGSIVQGKLKVGDEIEIR 252 (410)
T ss_dssp EEEEEEEESCEETTCEEEEE
T ss_pred EEEEEEEECEEEECCEEEEC
T ss_conf 99999976869609999998
No 5
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=73.14 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=113.8
Q ss_pred EEEEEEEECCCCC---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHCCCCCEEEEECCCCC-C
Q ss_conf 3337999489999---67787687320368998408885323333224--7579999999875099855897305996-3
Q 004549 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPT-D 195 (745)
Q Consensus 122 k~Rltfi~~~~~d---l~~~LD~aKvADlVlllidas~g~~~~~~~~f--d~~g~e~L~~L~aqGlP~vigvl~~L~~-~ 195 (745)
.++++|+-+| +- +..|+..+..||++|||+|++.|.-+ .+| ...+.+.+..+...|+|.+|.|++.+|. +
T Consensus 254 ~~~i~iiDTP-Gh~~f~~~~~~~~~~aD~alLVVDa~~g~~e---~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAP-GHRDFISGMIAGASSADFAVLVVDSSQNNFE---RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEE-SSSEEEEECCC-------CCSEEEEEECCSS---TTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHCCEEEEEEECCCCCCC---CCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9489999899-8288899999888658999999978877522---24465557999999999839984999996346655
Q ss_pred --HHHHHHHHHHHHHHC-CCC-C-CCCCEEEEECCHHH--H--------------HHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf --130599999987420-232-5-89982698179778--9--------------9999998632546873235888179
Q 004549 196 --LKKRKDLKKMCISSL-TSE-F-PEDCKFYAADTKDE--L--------------HKFLWLFKEQRLTVPHWRNQRPFLM 254 (745)
Q Consensus 196 --~kk~~~~kK~lk~~f-~~e-f-~~~~Klf~l~~~~e--~--------------~nL~R~I~~~k~r~l~WR~~rpYmL 254 (745)
......+++.+..++ ... + +.+..++++|..+. + ..|+..|....+ |-...+....|.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~ 408 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLS 408 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHE
T ss_conf 4378999999999999987508886624899975455754334543221223540789999975206-555555560012
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCCC-CEEECEEECC
Q ss_conf 87357415889999854999999917799999908847887-5021001116
Q 004549 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (745)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~ 305 (745)
++++-.. . +..+++|.|....++++..|.|.+.| ...|.+|..-
T Consensus 409 v~~v~~~-~------~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~ 453 (592)
T 3mca_A 409 IDDVYRS-P------RSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN 453 (592)
T ss_dssp EEEEEEE-T------TEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS
T ss_pred EEEEEEC-C------CEEEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEC
T ss_conf 4689955-9------8299999994136736988999169946899999975
No 6
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=72.46 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=144.2
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC-----------CC---CC-CCCEEE-----EECCCEEEEEEEECCCCC
Q ss_conf 99998799994489866931289999985402-----------89---99-752599-----706803337999489999
Q 004549 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EG---TG-ALSSTV-----SSSKYRLRTSVLQAPHGD 134 (745)
Q Consensus 75 ~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~-----------~~---~~-~g~~tv-----~~~r~k~Rltfi~~~~~d 134 (745)
...+.+.|+|+|..+.+.. +|++.|+..... .+ .+ ...+|+ .....+.+++|+.+| .-
T Consensus 292 ~~k~~lnIvIIGhvDvGKS-TLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP-GH 369 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKT-TLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP-GH 369 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHH-HHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECC-CH
T ss_pred CCCCEEEEEEECCCCCCHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC-CH
T ss_conf 2577048999828998899-999999864023564323332235664213237536888899974798799999898-83
Q ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHH-HHHHHHHHHH
Q ss_conf ---67787687320368998408885323333224757999999987509985589730599631-305-9999998742
Q 004549 135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL-KKR-KDLKKMCISS 209 (745)
Q Consensus 135 ---l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~-kk~-~~~kK~lk~~ 209 (745)
...|+..++.||.+|||+|++.| ....+.+.+..+...|+|.+|.|++.+|... ..+ ..++..++.+
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCC--------CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999988439999999818766--------7588999999998759986999985145421034689999999999
Q ss_pred CCCC-C-CCCCEEEEECCHHH----------HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf 0232-5-89982698179778----------9999999863254687323588817987357415889999854999999
Q 004549 210 LTSE-F-PEDCKFYAADTKDE----------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (745)
Q Consensus 210 f~~e-f-~~~~Klf~l~~~~e----------~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (745)
+... + +....+++.|..+. +..|+..|...-+.|....+....|.++++-.++. .-.+++|.
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G------~GtVvtGr 515 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG------RGTVVTGR 515 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETT------TEEEEEEE
T ss_pred HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC------CCEEEEEE
T ss_conf 985134666315999872247777863003634667677653688754421210330000001258------86799999
Q ss_pred EECCCCCCCCEEEECCCCC---EEECEEECCCCCC
Q ss_conf 9177999999088478875---0210011168998
Q 004549 278 LRAHCLSVNQLVHISGAGD---FQLGKIEILKDPF 309 (745)
Q Consensus 278 vRG~~l~~n~lVHIpG~GD---Fqi~~I~~~~DP~ 309 (745)
|....++++..|.|.+.|+ ..|.+|.....|+
T Consensus 516 V~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v 550 (1289)
T 3avx_A 516 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 550 (1289)
T ss_dssp CCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEE
T ss_pred EECCEEECCCEEEEECCCCCEEEEEEEEEECCCEE
T ss_conf 96638961988999368996369997886369245
No 7
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=1.00 E-value=1 Score=70.96 Aligned_cols=204 Identities=12% Similarity=0.100 Sum_probs=133.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC-----CC-CCEEEEE-------------------------CC---C
Q ss_conf 9998799994489866931289999985402899-----97-5259970-------------------------68---0
Q 004549 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA-LSSTVSS-------------------------SK---Y 121 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~-g~~tv~~-------------------------~r---~ 121 (745)
..+.+.|+|+|..+.+.. +| +..|++... +. ..+|+.+ ++ .
T Consensus 5 r~~~~~I~iiG~~d~GKS-TL----i~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~ 79 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKT-SL----TKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEF 79 (408)
T ss_dssp CCCCEEEEEESCTTSSHH-HH----HHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEE
T ss_pred CCCCEEEEEECCCCCCHH-HH----HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 678129999968999999-99----9887498655572010378579930133431135555410014546555765422
Q ss_pred EEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEECCCCC-CHH
Q ss_conf 33379994899-99-67787687320368998408885323333224-7579999999875099855897305996-313
Q 004549 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (745)
Q Consensus 122 k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~f-d~~g~e~L~~L~aqGlP~vigvl~~L~~-~~k 197 (745)
+.+++|+.+|- .+ ...|+..+..||.+||++|++.| + ...+.+.|..++..|.+.++.|++..|. +..
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP--------CPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC--------SSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
T ss_conf 31799997999899999999768569999999999988--------8870359999999984998199999835789979
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCH--HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCC--CCCCCEEE
Q ss_conf 05999999874202325899826981797--789999999863254687323588817987357415889--99985499
Q 004549 198 KRKDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLL 273 (745)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~~--~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~ 273 (745)
........++.++......+..+|++|.. ..+..|+..|...-+.|..+.+..+.|.+++.-.+.... -+..+-.+
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v 231 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGV 231 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCE
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEE
T ss_conf 99999999999986438778709995477887779999999975889764678970899999986168885213675469
Q ss_pred EEEEEECCCCCCCCEEEEC
Q ss_conf 9999917799999908847
Q 004549 274 LHGYLRAHCLSVNQLVHIS 292 (745)
Q Consensus 274 v~GyvRG~~l~~n~lVHIp 292 (745)
++|.|....++++..|.+.
T Consensus 232 ~~g~v~~G~l~~gd~v~~~ 250 (408)
T 1s0u_A 232 LGGAIIQGVFKVGDEIEIR 250 (408)
T ss_dssp EEEEEEESCEETTCEEEEE
T ss_pred EEEEEEECEEECCCEEEEC
T ss_conf 9999987949609999995
No 8
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=1.00 E-value=1 Score=67.11 Aligned_cols=214 Identities=13% Similarity=0.070 Sum_probs=136.2
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC---------------------CCCCCEEEEECCCEEEEEEEECCC-C
Q ss_conf 999879999448986693128999998540289---------------------997525997068033379994899-9
Q 004549 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG---------------------TGALSSTVSSSKYRLRTSVLQAPH-G 133 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~---------------------~~~g~~tv~~~r~k~Rltfi~~~~-~ 133 (745)
..+.+-|+++|.++.+.. +|++.|+..+.... .+.....+.....+.+++|+.+|- .
T Consensus 8 ~~~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKT-TLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHH-HHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCEEEEEEECCCCCCHH-HHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHCCCCEEEEEEEECCCCEEEEEEECCCHH
T ss_conf 997689999958999989-9999997215434865443212220478779875997781125862697489999899769
Q ss_pred C-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHH-HHHHHHHHHHC
Q ss_conf 9-6778768732036899840888532333322475799999998750998558973059963-1305-99999987420
Q 004549 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSL 210 (745)
Q Consensus 134 d-l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~-~kk~-~~~kK~lk~~f 210 (745)
+ ...|+..+..||.+||++|++.| ....+.+.+..+...|+|.++.|++..|.. .... ..++..++.++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999779999999989999--------86789999999998499879999978644674789999999999999
Q ss_pred CCCCC--CCCEEEEECCHHH--------------------HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 23258--9982698179778--------------------9999999863254687323588817987357415889999
Q 004549 211 TSEFP--EDCKFYAADTKDE--------------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSG 268 (745)
Q Consensus 211 ~~ef~--~~~Klf~l~~~~e--------------------~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~ 268 (745)
...-+ ....+++.|..+. +..|+..|...-+.|..-.+....|.++++-..+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~----- 233 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG----- 233 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETT-----
T ss_pred HHHCCCCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCC-----
T ss_conf 972644558978972477711233046554567775435499999987864689987888984889999998099-----
Q ss_pred CCEEEEEEEEECCCCCCCCEEEECCCCC----EEECEEEC
Q ss_conf 8549999999177999999088478875----02100111
Q 004549 269 KCTLLLHGYLRAHCLSVNQLVHISGAGD----FQLGKIEI 304 (745)
Q Consensus 269 ~~~l~v~GyvRG~~l~~n~lVHIpG~GD----Fqi~~I~~ 304 (745)
.-.+++|.|....++++..|.+.+.|+ ..|.+|..
T Consensus 234 -~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~ 272 (405)
T 2c78_A 234 -RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 272 (405)
T ss_dssp -TEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEE
T ss_pred -CCEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf -745999999535025899999957999704599989998
No 9
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=56.81 Aligned_cols=208 Identities=10% Similarity=0.060 Sum_probs=109.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHH-CCCC---CCC--CCEEEEECCCEEEEEEEECCC-CCHHH-HHHHHHHCCEEE
Q ss_conf 987999944898669312899999854-0289---997--525997068033379994899-99677-876873203689
Q 004549 78 PPRVIVLFGLSASVNLNSVREDLLRQL-SSEG---TGA--LSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVA 149 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~-~~~~---~~~--g~~tv~~~r~k~Rltfi~~~~-~dl~~-~LD~aKvADlVl 149 (745)
-|..|+|+|.++.+.. +|.+.|.+.- .... .+. +...+..+. ..+++|+-+|- .++.. +...++.||++|
T Consensus 3 r~pkV~IvG~~~vGKT-SLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKT-TLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHH-HHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHH-HHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999999899989-99999958876620179666887699999489-978999989884899999999871198899
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCCCCCEEEEECCHH
Q ss_conf 984088853233332247579999999875099855897305996313059999998742--023258998269817977
Q 004549 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYAADTKD 227 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk~~~~kK~lk~~--f~~ef~~~~Klf~l~~~~ 227 (745)
|++|++.| ....+.+.+..+...|+| ++.|++..|........++..+..+ +...+.....+|++|..+
T Consensus 81 LVVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAkt 151 (537)
T 3izy_P 81 LVVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALT 151 (537)
T ss_dssp EECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSS
T ss_pred EEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 99979998--------647789999999875996-899994343233425889999986301377618983399997887
Q ss_pred --HHHHHHHHHHHCC--CCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEECEEE
Q ss_conf --8999999986325--468732358881798735741588999985499999991779999990884788750210011
Q 004549 228 --ELHKFLWLFKEQR--LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIE 303 (745)
Q Consensus 228 --e~~nL~R~I~~~k--~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~ 303 (745)
.+..|+..|...- +.+-.-.+....+.+++....+. .| ..++|-|....|+++..| ++|----.|..|.
T Consensus 152 G~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g-----~G-~V~~g~V~~G~l~~Gd~v-~~g~~~~kVr~i~ 224 (537)
T 3izy_P 152 GENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKG-----RG-PVTTAIIQRGTLRKGSIL-VAGKSWAKVRLMF 224 (537)
T ss_dssp SCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTT-----CC-CCEEEEEEEECCSSEEEE-CCSSCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECC-----CC-EEEEEEEECCEEECCCEE-EECCCEEEEEEEE
T ss_conf 9995047899998653035557887886116899998489-----75-399999966889769999-7389549999999
No 10
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=56.01 Aligned_cols=129 Identities=13% Similarity=0.194 Sum_probs=86.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCC--CCEEEEECCCEEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCC
Q ss_conf 9999448986693128999998540289997--525997068033379994899-99-6778768732036899840888
Q 004549 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASS 156 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g~~tv~~~r~k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~ 156 (745)
.|+++|.++.+.. +| +..|+....+. +...+..+ +.+++|+-+|- .+ +..|+..++.||.+||++| +.
T Consensus 23 ~i~iiG~~d~GKS-TL----~~~L~~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~ 94 (370)
T 2elf_A 23 NVAIIGTEKSGRT-SL----AANLGKKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ 94 (370)
T ss_dssp EEEEEESTTSSHH-HH----HHTTSEEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred EEEEECCCCCCHH-HH----HHHHHHCCEEEEEEEEEEECC--CEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEC-CC
T ss_conf 7999989999899-99----999986987888668999629--8499999899828989999998977999999991-88
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHH-HHHHHHHHHHCCCCCCCCCEEEE--ECCH
Q ss_conf 5323333224757999999987509985589730-599631305-99999987420232589982698--1797
Q 004549 157 FSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIR-DLPTDLKKR-KDLKKMCISSLTSEFPEDCKFYA--ADTK 226 (745)
Q Consensus 157 g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~-~L~~~~kk~-~~~kK~lk~~f~~ef~~~~Klf~--l~~~ 226 (745)
+....+.+.+..+...|+|.++.+++ .+|. .... ..+...++.++...-.....+|+ .|..
T Consensus 95 --------g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 95 --------GLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp --------CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred --------CCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf --------9867899999999973998289999803579-9899999999999999753997168982430114
Done!