Query 004550
Match_columns 745
No_of_seqs 593 out of 4830
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 01:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0741 AAA+-type ATPase [Post 100.0 2E-131 3E-136 1033.6 55.5 700 9-717 5-725 (744)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 7E-88 1.5E-92 716.9 38.6 510 213-743 185-770 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 7.2E-81 1.6E-85 674.8 40.7 632 30-742 29-674 (693)
4 TIGR01243 CDC48 AAA family ATP 100.0 2.3E-73 5E-78 671.9 61.7 675 14-742 3-710 (733)
5 KOG0736 Peroxisome assembly fa 100.0 1.6E-58 3.4E-63 504.2 40.2 573 129-743 306-933 (953)
6 COG1222 RPT1 ATP-dependent 26S 100.0 2.7E-58 5.9E-63 467.1 28.3 286 175-489 105-394 (406)
7 COG0464 SpoVK ATPases of the A 100.0 6.3E-52 1.4E-56 470.9 42.0 471 239-742 2-483 (494)
8 KOG0735 AAA+-type ATPase [Post 100.0 2.9E-51 6.2E-56 443.1 33.2 434 253-708 429-878 (952)
9 KOG0730 AAA+-type ATPase [Post 100.0 5.1E-51 1.1E-55 442.7 24.3 253 210-491 426-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 4.4E-50 9.6E-55 428.1 25.4 266 211-492 504-774 (802)
11 KOG0736 Peroxisome assembly fa 100.0 3.6E-48 7.8E-53 423.2 23.9 264 212-492 666-937 (953)
12 KOG0727 26S proteasome regulat 100.0 2.2E-46 4.7E-51 361.0 23.3 284 175-487 109-396 (408)
13 KOG0728 26S proteasome regulat 100.0 1.3E-45 2.7E-50 355.4 21.1 284 176-488 102-389 (404)
14 KOG0726 26S proteasome regulat 100.0 4.2E-45 9E-50 358.8 18.9 282 177-487 141-426 (440)
15 KOG0652 26S proteasome regulat 100.0 1.9E-44 4.1E-49 349.0 22.4 249 212-489 165-414 (424)
16 COG1223 Predicted ATPase (AAA+ 100.0 5.1E-43 1.1E-47 339.4 24.9 307 125-491 49-359 (368)
17 KOG0729 26S proteasome regulat 100.0 1.9E-43 4.2E-48 343.0 17.4 250 211-489 170-420 (435)
18 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-42 2.4E-47 354.8 21.3 262 211-492 205-474 (491)
19 KOG0734 AAA+-type ATPase conta 100.0 2E-42 4.3E-47 364.1 19.8 243 213-487 299-541 (752)
20 PTZ00454 26S protease regulato 100.0 3.5E-40 7.7E-45 358.5 29.1 287 175-490 99-389 (398)
21 KOG0735 AAA+-type ATPase [Post 100.0 5.2E-41 1.1E-45 363.8 22.3 233 213-463 662-894 (952)
22 KOG0732 AAA+-type ATPase conta 100.0 6.2E-40 1.3E-44 376.1 22.2 383 213-611 260-669 (1080)
23 PRK03992 proteasome-activating 100.0 3.1E-38 6.7E-43 345.5 28.9 285 178-491 88-376 (389)
24 PTZ00361 26 proteosome regulat 100.0 4.9E-38 1.1E-42 343.3 27.2 285 176-489 138-426 (438)
25 KOG0731 AAA+-type ATPase conta 100.0 1.3E-38 2.8E-43 357.1 22.7 246 213-487 306-553 (774)
26 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-39 6E-44 318.8 14.7 262 210-491 125-420 (439)
27 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-37 2.3E-42 368.7 27.0 263 212-491 447-714 (733)
28 KOG0737 AAA+-type ATPase [Post 100.0 5.9E-38 1.3E-42 321.3 19.7 258 213-490 87-362 (386)
29 COG0464 SpoVK ATPases of the A 100.0 1.7E-37 3.6E-42 352.8 24.7 254 210-491 234-487 (494)
30 KOG0651 26S proteasome regulat 100.0 1.9E-38 4.2E-43 315.4 12.4 247 213-488 127-374 (388)
31 COG0465 HflB ATP-dependent Zn 100.0 7E-37 1.5E-41 338.4 20.7 246 213-488 145-391 (596)
32 CHL00195 ycf46 Ycf46; Provisio 100.0 1.3E-35 2.9E-40 329.0 24.7 246 213-492 223-468 (489)
33 TIGR03689 pup_AAA proteasome A 100.0 4.9E-35 1.1E-39 323.4 26.8 258 212-486 176-477 (512)
34 COG1222 RPT1 ATP-dependent 26S 100.0 5.4E-36 1.2E-40 304.8 17.1 239 497-743 147-393 (406)
35 TIGR01242 26Sp45 26S proteasom 100.0 2E-34 4.2E-39 314.6 29.4 280 179-487 80-363 (364)
36 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-34 5.9E-39 325.3 23.9 247 213-489 50-297 (495)
37 TIGR02639 ClpA ATP-dependent C 100.0 9.4E-33 2E-37 325.5 34.7 437 216-711 180-707 (731)
38 PRK11034 clpA ATP-dependent Cl 100.0 7.8E-32 1.7E-36 312.9 34.2 436 216-710 184-710 (758)
39 CHL00195 ycf46 Ycf46; Provisio 100.0 2.5E-31 5.4E-36 295.0 36.3 369 324-743 82-464 (489)
40 CHL00176 ftsH cell division pr 100.0 5.4E-33 1.2E-37 317.5 23.5 245 213-487 178-423 (638)
41 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.7E-32 2.1E-36 320.1 21.9 212 244-489 1619-1879(2281)
42 PRK10733 hflB ATP-dependent me 100.0 5.3E-31 1.1E-35 305.0 24.4 247 214-490 148-395 (644)
43 PLN00020 ribulose bisphosphate 100.0 9.1E-31 2E-35 271.4 21.9 196 248-456 141-353 (413)
44 KOG0740 AAA+-type ATPase [Post 100.0 2.9E-31 6.2E-36 282.6 17.6 261 212-492 147-409 (428)
45 CHL00095 clpC Clp protease ATP 100.0 1.4E-28 2.9E-33 293.4 34.1 449 216-710 177-776 (821)
46 TIGR03345 VI_ClpV1 type VI sec 100.0 7.2E-28 1.6E-32 285.4 37.3 190 215-439 184-390 (852)
47 TIGR03346 chaperone_ClpB ATP-d 100.0 2E-27 4.4E-32 284.0 35.8 449 216-713 171-823 (852)
48 KOG0734 AAA+-type ATPase conta 100.0 3.5E-29 7.5E-34 264.4 14.5 232 502-743 305-542 (752)
49 PRK10865 protein disaggregatio 100.0 1.3E-26 2.9E-31 275.6 37.3 189 215-438 175-380 (857)
50 COG0542 clpA ATP-binding subun 100.0 1.9E-27 4.1E-32 269.7 28.5 445 214-711 166-750 (786)
51 COG1223 Predicted ATPase (AAA+ 100.0 2.8E-28 6.1E-33 237.1 16.3 217 514-741 127-354 (368)
52 KOG0727 26S proteasome regulat 100.0 4.7E-28 1E-32 234.3 15.6 241 495-743 149-397 (408)
53 KOG0738 AAA+-type ATPase [Post 100.0 5E-28 1.1E-32 247.8 14.6 258 479-742 193-469 (491)
54 KOG0728 26S proteasome regulat 99.9 8.3E-28 1.8E-32 232.3 13.1 233 503-743 149-389 (404)
55 PTZ00454 26S protease regulato 99.9 4.6E-26 1E-30 248.1 20.4 240 495-743 139-387 (398)
56 KOG0652 26S proteasome regulat 99.9 5.5E-27 1.2E-31 227.9 11.6 219 517-743 187-413 (424)
57 KOG0729 26S proteasome regulat 99.9 1.4E-26 3E-31 225.7 13.1 239 497-743 173-419 (435)
58 KOG0731 AAA+-type ATPase conta 99.9 8.6E-26 1.9E-30 254.1 18.2 229 504-742 314-553 (774)
59 PRK03992 proteasome-activating 99.9 6.7E-25 1.4E-29 240.4 20.3 238 497-743 127-373 (389)
60 KOG0739 AAA+-type ATPase [Post 99.9 9.5E-26 2.1E-30 223.3 11.2 207 488-697 120-332 (439)
61 PTZ00361 26 proteosome regulat 99.9 5E-25 1.1E-29 241.2 17.3 234 501-743 183-425 (438)
62 KOG0726 26S proteasome regulat 99.9 5.4E-26 1.2E-30 224.3 8.0 233 503-743 187-427 (440)
63 KOG0737 AAA+-type ATPase [Post 99.9 4.8E-25 1E-29 226.6 15.1 245 495-741 86-358 (386)
64 TIGR03689 pup_AAA proteasome A 99.9 3.3E-24 7.3E-29 237.5 20.5 241 496-741 177-477 (512)
65 TIGR01241 FtsH_fam ATP-depende 99.9 5.5E-24 1.2E-28 241.3 19.3 235 499-743 53-296 (495)
66 PLN00020 ribulose bisphosphate 99.9 7.9E-24 1.7E-28 220.0 17.2 168 530-700 143-332 (413)
67 COG0465 HflB ATP-dependent Zn 99.9 3E-24 6.4E-29 238.3 14.4 209 526-743 174-391 (596)
68 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.2E-23 2.5E-28 251.8 19.5 202 529-743 1624-1878(2281)
69 CHL00176 ftsH cell division pr 99.9 3.2E-23 7E-28 237.3 19.1 233 500-742 182-423 (638)
70 TIGR01242 26Sp45 26S proteasom 99.9 8.1E-23 1.8E-27 223.2 19.0 234 500-742 121-363 (364)
71 KOG0651 26S proteasome regulat 99.9 1.9E-23 4.2E-28 208.7 8.4 223 512-742 143-373 (388)
72 KOG0732 AAA+-type ATPase conta 99.9 4.5E-22 9.7E-27 229.7 16.5 245 496-742 260-525 (1080)
73 KOG0741 AAA+-type ATPase [Post 99.9 9.8E-23 2.1E-27 215.7 10.1 236 506-743 223-491 (744)
74 CHL00181 cbbX CbbX; Provisiona 99.9 3.5E-21 7.5E-26 201.9 20.0 216 222-461 25-261 (287)
75 KOG0740 AAA+-type ATPase [Post 99.9 8.1E-22 1.7E-26 210.5 13.1 246 495-743 147-405 (428)
76 PRK10733 hflB ATP-dependent me 99.9 3.2E-21 6.9E-26 223.7 17.9 205 529-742 179-392 (644)
77 TIGR02880 cbbX_cfxQ probable R 99.9 9.4E-21 2E-25 198.9 19.3 236 222-482 24-280 (284)
78 KOG0744 AAA+-type ATPase [Post 99.9 3E-21 6.6E-26 193.8 13.1 216 252-487 174-414 (423)
79 TIGR02881 spore_V_K stage V sp 99.8 3.5E-20 7.6E-25 193.1 18.6 215 222-461 8-245 (261)
80 KOG0742 AAA+-type ATPase [Post 99.8 1.5E-19 3.2E-24 186.3 17.9 188 254-455 383-593 (630)
81 PF00004 AAA: ATPase family as 99.8 1.1E-19 2.3E-24 168.9 14.0 131 258-399 1-132 (132)
82 KOG0743 AAA+-type ATPase [Post 99.8 1.1E-18 2.4E-23 184.9 17.1 204 215-444 198-410 (457)
83 COG2256 MGS1 ATPase related to 99.8 1.3E-18 2.7E-23 181.2 16.7 176 533-742 46-238 (436)
84 PF00004 AAA: ATPase family as 99.8 7E-19 1.5E-23 163.4 13.1 130 538-668 1-132 (132)
85 PF05496 RuvB_N: Holliday junc 99.8 3.1E-18 6.8E-23 167.8 17.5 192 504-717 21-231 (233)
86 PF05496 RuvB_N: Holliday junc 99.7 1.7E-17 3.6E-22 162.7 14.9 190 214-450 20-225 (233)
87 TIGR02881 spore_V_K stage V sp 99.7 4.6E-17 1E-21 169.7 17.3 203 503-715 8-238 (261)
88 TIGR02880 cbbX_cfxQ probable R 99.7 2.2E-17 4.8E-22 173.4 14.7 226 503-738 24-281 (284)
89 KOG0742 AAA+-type ATPase [Post 99.7 7.2E-17 1.6E-21 166.7 16.6 197 531-741 380-611 (630)
90 CHL00181 cbbX CbbX; Provisiona 99.7 9.4E-17 2E-21 168.5 16.5 203 503-715 25-254 (287)
91 COG2255 RuvB Holliday junction 99.7 5.7E-16 1.2E-20 154.3 17.7 208 506-742 25-251 (332)
92 TIGR00635 ruvB Holliday juncti 99.7 3.1E-15 6.8E-20 160.0 19.9 211 216-486 2-228 (305)
93 TIGR00763 lon ATP-dependent pr 99.7 1.6E-15 3.4E-20 180.6 19.3 234 221-485 321-584 (775)
94 PRK00080 ruvB Holliday junctio 99.7 4E-15 8.6E-20 160.4 19.6 216 215-487 22-250 (328)
95 PTZ00112 origin recognition co 99.6 6E-15 1.3E-19 167.1 20.4 186 536-742 782-1006(1164)
96 KOG2028 ATPase related to the 99.6 2.8E-15 6.1E-20 153.1 15.7 181 533-741 160-367 (554)
97 PRK00080 ruvB Holliday junctio 99.6 6.5E-15 1.4E-19 158.8 19.6 199 516-742 33-250 (328)
98 COG2255 RuvB Holliday junction 99.6 4.7E-15 1E-19 147.8 16.9 196 214-456 22-233 (332)
99 KOG1051 Chaperone HSP104 and r 99.6 3E-14 6.4E-19 164.9 24.7 161 222-415 189-365 (898)
100 KOG0743 AAA+-type ATPase [Post 99.6 2.9E-15 6.2E-20 159.1 13.5 163 512-684 209-385 (457)
101 COG2256 MGS1 ATPase related to 99.6 1.9E-14 4.1E-19 150.3 18.7 179 214-439 20-206 (436)
102 TIGR00635 ruvB Holliday juncti 99.6 2E-14 4.3E-19 153.8 19.6 183 533-742 28-229 (305)
103 PRK14956 DNA polymerase III su 99.6 2.2E-14 4.8E-19 157.2 19.2 173 534-739 39-243 (484)
104 PRK14962 DNA polymerase III su 99.6 6.8E-14 1.5E-18 156.0 19.7 175 533-740 34-240 (472)
105 TIGR00763 lon ATP-dependent pr 99.6 3.5E-14 7.5E-19 169.1 18.3 189 514-711 326-550 (775)
106 TIGR02928 orc1/cdc6 family rep 99.6 2.2E-13 4.7E-18 149.6 22.2 230 213-488 10-275 (365)
107 PRK13342 recombination factor 99.6 9.7E-14 2.1E-18 154.2 19.5 171 534-741 35-218 (413)
108 TIGR02928 orc1/cdc6 family rep 99.6 7.4E-14 1.6E-18 153.3 17.2 196 533-742 38-274 (365)
109 COG1474 CDC6 Cdc6-related prot 99.6 8.7E-14 1.9E-18 150.2 17.0 192 533-741 40-264 (366)
110 PRK07003 DNA polymerase III su 99.5 1.8E-13 3.8E-18 155.3 19.7 160 533-714 36-227 (830)
111 KOG0744 AAA+-type ATPase [Post 99.5 6.1E-14 1.3E-18 141.7 13.6 143 535-680 177-338 (423)
112 PLN03025 replication factor C 99.5 1.4E-13 3E-18 147.8 17.2 157 535-713 34-206 (319)
113 PF02359 CDC48_N: Cell divisio 99.5 2.8E-14 6.1E-19 121.9 9.0 81 14-99 1-86 (87)
114 PRK04195 replication factor C 99.5 4.1E-13 9E-18 152.0 20.9 177 516-713 22-208 (482)
115 PRK14956 DNA polymerase III su 99.5 2.8E-13 6E-18 148.7 18.5 198 214-452 14-228 (484)
116 COG0466 Lon ATP-dependent Lon 99.5 1.2E-13 2.6E-18 153.4 15.5 162 222-413 325-508 (782)
117 PRK00411 cdc6 cell division co 99.5 8.8E-13 1.9E-17 146.3 22.3 232 213-489 25-284 (394)
118 TIGR02639 ClpA ATP-dependent C 99.5 1.3E-13 2.8E-18 163.4 16.6 198 534-742 202-429 (731)
119 PRK14962 DNA polymerase III su 99.5 6.9E-13 1.5E-17 148.0 21.2 191 214-451 10-223 (472)
120 TIGR00390 hslU ATP-dependent p 99.5 9.7E-14 2.1E-18 148.6 13.5 147 595-743 247-431 (441)
121 PRK14961 DNA polymerase III su 99.5 7.1E-13 1.5E-17 144.6 20.1 182 533-740 36-242 (363)
122 PRK06645 DNA polymerase III su 99.5 6.4E-13 1.4E-17 148.7 19.9 185 533-740 41-254 (507)
123 PRK14960 DNA polymerase III su 99.5 5.5E-13 1.2E-17 150.0 19.2 174 533-739 35-240 (702)
124 PRK14949 DNA polymerase III su 99.5 6.5E-13 1.4E-17 153.6 20.3 165 534-713 37-226 (944)
125 PRK07940 DNA polymerase III su 99.5 6.4E-13 1.4E-17 144.9 19.1 194 217-446 4-214 (394)
126 PRK12323 DNA polymerase III su 99.5 3.2E-13 7E-18 151.4 17.0 158 534-713 37-231 (700)
127 PRK07994 DNA polymerase III su 99.5 5.7E-13 1.2E-17 152.1 19.3 159 534-714 37-227 (647)
128 PRK13341 recombination factor 99.5 4.9E-13 1.1E-17 155.8 18.8 179 533-741 50-246 (725)
129 PRK00411 cdc6 cell division co 99.5 6.4E-13 1.4E-17 147.4 18.9 195 533-742 53-282 (394)
130 KOG0989 Replication factor C, 99.5 3E-13 6.4E-18 136.5 14.4 167 533-715 55-238 (346)
131 PRK14958 DNA polymerase III su 99.5 5.6E-13 1.2E-17 150.3 18.4 189 514-740 22-242 (509)
132 TIGR00362 DnaA chromosomal rep 99.5 5.7E-13 1.2E-17 148.0 18.3 205 213-455 105-319 (405)
133 KOG2004 Mitochondrial ATP-depe 99.5 2.3E-13 5.1E-18 150.1 14.6 162 222-413 413-596 (906)
134 PRK00149 dnaA chromosomal repl 99.5 4.6E-13 9.9E-18 150.6 17.2 224 213-487 117-349 (450)
135 PRK05201 hslU ATP-dependent pr 99.5 2.3E-13 5E-18 145.8 13.5 147 595-743 249-433 (443)
136 PRK07003 DNA polymerase III su 99.5 7.4E-13 1.6E-17 150.3 18.1 199 214-453 12-227 (830)
137 PRK14961 DNA polymerase III su 99.5 1.7E-12 3.6E-17 141.7 20.3 198 214-452 12-226 (363)
138 PRK12323 DNA polymerase III su 99.5 5.3E-13 1.1E-17 149.7 16.6 198 214-452 12-231 (700)
139 TIGR02902 spore_lonB ATP-depen 99.5 6.1E-13 1.3E-17 151.5 17.5 222 214-485 61-330 (531)
140 PRK06893 DNA replication initi 99.5 3.1E-13 6.8E-18 137.9 13.0 178 536-740 40-228 (229)
141 KOG2028 ATPase related to the 99.5 1E-12 2.2E-17 134.7 16.4 220 215-487 135-368 (554)
142 PTZ00112 origin recognition co 99.5 1.5E-12 3.3E-17 147.9 19.4 224 213-487 750-1006(1164)
143 COG5271 MDN1 AAA ATPase contai 99.5 5.5E-12 1.2E-16 147.2 23.1 158 534-703 887-1068(4600)
144 PRK06645 DNA polymerase III su 99.5 2.5E-12 5.4E-17 144.1 19.9 200 214-454 17-237 (507)
145 PRK14952 DNA polymerase III su 99.5 2.2E-12 4.7E-17 146.7 19.4 190 513-739 18-241 (584)
146 KOG0989 Replication factor C, 99.5 1.4E-12 3.1E-17 131.6 15.8 196 214-450 32-234 (346)
147 PRK11034 clpA ATP-dependent Cl 99.5 9.2E-13 2E-17 154.2 16.8 197 534-741 206-432 (758)
148 PRK06893 DNA replication initi 99.5 3.2E-12 7E-17 130.4 18.8 162 256-450 40-207 (229)
149 PRK07994 DNA polymerase III su 99.5 2E-12 4.4E-17 147.6 19.1 192 214-452 12-226 (647)
150 PRK14957 DNA polymerase III su 99.5 2.2E-12 4.8E-17 145.3 19.2 174 533-739 36-241 (546)
151 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.1E-12 4.7E-17 131.8 17.4 195 213-456 10-211 (226)
152 TIGR00390 hslU ATP-dependent p 99.4 2.9E-12 6.3E-17 137.3 18.6 182 222-409 14-342 (441)
153 PRK14960 DNA polymerase III su 99.4 3.1E-12 6.8E-17 144.0 19.2 193 214-453 11-226 (702)
154 PRK14963 DNA polymerase III su 99.4 4.8E-12 1E-16 142.4 20.7 187 514-739 20-237 (504)
155 PRK14958 DNA polymerase III su 99.4 2.2E-12 4.8E-17 145.5 17.9 193 214-453 12-227 (509)
156 TIGR02640 gas_vesic_GvpN gas v 99.4 7.5E-12 1.6E-16 130.4 20.4 185 536-743 22-258 (262)
157 PRK14964 DNA polymerase III su 99.4 3.5E-12 7.5E-17 141.8 18.7 174 533-739 33-238 (491)
158 PRK14964 DNA polymerase III su 99.4 4.7E-12 1E-16 140.7 19.3 193 214-453 9-224 (491)
159 PRK14951 DNA polymerase III su 99.4 3.9E-12 8.5E-17 145.1 19.0 196 513-739 21-246 (618)
160 PRK08691 DNA polymerase III su 99.4 3E-12 6.4E-17 145.5 17.5 182 533-740 36-242 (709)
161 PRK14949 DNA polymerase III su 99.4 4.9E-12 1.1E-16 146.5 19.4 197 214-451 12-225 (944)
162 PRK13342 recombination factor 99.4 5.9E-12 1.3E-16 139.9 18.8 190 214-451 8-201 (413)
163 PRK07764 DNA polymerase III su 99.4 6.5E-12 1.4E-16 148.1 19.9 173 534-738 36-242 (824)
164 PRK08084 DNA replication initi 99.4 2.9E-12 6.2E-17 131.3 14.6 178 536-740 46-234 (235)
165 PRK14969 DNA polymerase III su 99.4 5E-12 1.1E-16 143.6 18.0 181 533-739 36-241 (527)
166 PRK05201 hslU ATP-dependent pr 99.4 1.5E-12 3.2E-17 139.7 12.8 183 222-410 17-345 (443)
167 PRK05342 clpX ATP-dependent pr 99.4 7.4E-12 1.6E-16 137.3 18.5 246 222-481 73-399 (412)
168 PRK05563 DNA polymerase III su 99.4 9.2E-12 2E-16 142.4 20.1 174 533-739 36-241 (559)
169 PRK08691 DNA polymerase III su 99.4 5.1E-12 1.1E-16 143.6 17.8 199 214-453 12-227 (709)
170 PRK00149 dnaA chromosomal repl 99.4 3.1E-12 6.7E-17 143.9 15.9 191 533-742 146-349 (450)
171 PRK14959 DNA polymerase III su 99.4 7.2E-12 1.6E-16 141.9 18.7 173 534-739 37-241 (624)
172 PRK12402 replication factor C 99.4 1.6E-11 3.6E-16 133.2 21.0 193 214-447 11-227 (337)
173 PRK10787 DNA-binding ATP-depen 99.4 6.9E-12 1.5E-16 148.1 19.4 228 221-485 323-580 (784)
174 TIGR02902 spore_lonB ATP-depen 99.4 2.1E-12 4.4E-17 147.2 14.5 184 534-740 85-330 (531)
175 PRK12402 replication factor C 99.4 1.4E-11 3E-16 133.8 20.3 178 536-740 37-247 (337)
176 PRK12422 chromosomal replicati 99.4 5.2E-12 1.1E-16 140.3 17.2 230 213-487 106-343 (445)
177 PRK08084 DNA replication initi 99.4 1.3E-11 2.7E-16 126.5 18.7 190 213-451 17-214 (235)
178 PRK14088 dnaA chromosomal repl 99.4 7.2E-12 1.6E-16 139.6 18.0 223 213-487 100-332 (440)
179 PRK06620 hypothetical protein; 99.4 5.1E-12 1.1E-16 127.2 15.2 163 536-739 45-213 (214)
180 COG0466 Lon ATP-dependent Lon 99.4 6.7E-12 1.5E-16 139.7 17.3 184 513-709 328-551 (782)
181 COG1474 CDC6 Cdc6-related prot 99.4 3.4E-11 7.5E-16 130.1 22.4 229 213-488 12-266 (366)
182 PRK10787 DNA-binding ATP-depen 99.4 7.4E-12 1.6E-16 147.8 18.6 217 514-740 328-580 (784)
183 PRK05896 DNA polymerase III su 99.4 8.5E-12 1.8E-16 140.6 18.2 161 533-715 36-228 (605)
184 PRK04195 replication factor C 99.4 9.6E-12 2.1E-16 140.9 18.6 193 214-450 10-203 (482)
185 TIGR00362 DnaA chromosomal rep 99.4 5.4E-12 1.2E-16 140.2 16.1 169 533-713 134-316 (405)
186 PRK14969 DNA polymerase III su 99.4 8.1E-12 1.8E-16 141.9 17.7 199 214-453 12-227 (527)
187 PRK14086 dnaA chromosomal repl 99.4 9.7E-12 2.1E-16 140.2 18.0 225 213-487 283-515 (617)
188 TIGR02397 dnaX_nterm DNA polym 99.4 1.7E-11 3.6E-16 134.2 19.3 192 214-452 10-224 (355)
189 PRK05896 DNA polymerase III su 99.4 1.2E-11 2.7E-16 139.3 18.4 198 214-452 12-226 (605)
190 PRK14951 DNA polymerase III su 99.4 1.8E-11 3.8E-16 139.8 19.8 199 214-453 12-232 (618)
191 TIGR03420 DnaA_homol_Hda DnaA 99.4 8.4E-12 1.8E-16 127.4 15.6 179 533-739 36-225 (226)
192 PRK08903 DnaA regulatory inact 99.4 1.1E-11 2.4E-16 126.6 16.4 175 533-740 40-224 (227)
193 PRK08903 DnaA regulatory inact 99.4 1.9E-11 4.1E-16 124.9 18.1 205 213-485 13-224 (227)
194 PRK05342 clpX ATP-dependent pr 99.4 1.1E-11 2.4E-16 135.9 17.0 180 534-713 107-376 (412)
195 PRK05563 DNA polymerase III su 99.4 2.2E-11 4.9E-16 139.3 20.0 199 214-453 12-227 (559)
196 PRK14963 DNA polymerase III su 99.4 2.7E-11 5.9E-16 136.4 20.2 191 214-451 10-222 (504)
197 PRK13341 recombination factor 99.4 1.8E-11 3.9E-16 142.8 19.3 192 214-452 24-223 (725)
198 PRK07940 DNA polymerase III su 99.4 1.8E-11 3.9E-16 133.7 18.1 174 513-707 10-213 (394)
199 TIGR02903 spore_lon_C ATP-depe 99.4 3.4E-11 7.4E-16 139.3 21.5 194 534-740 174-428 (615)
200 PRK07133 DNA polymerase III su 99.4 2.2E-11 4.8E-16 139.9 19.5 167 533-714 38-226 (725)
201 KOG2004 Mitochondrial ATP-depe 99.4 1.2E-11 2.7E-16 136.7 16.5 184 514-710 417-640 (906)
202 PRK14957 DNA polymerase III su 99.4 2.9E-11 6.3E-16 136.3 19.9 199 214-453 12-227 (546)
203 TIGR02397 dnaX_nterm DNA polym 99.4 2.5E-11 5.5E-16 132.7 19.0 175 533-740 34-240 (355)
204 PRK08451 DNA polymerase III su 99.4 3.2E-11 6.8E-16 135.3 19.9 168 533-715 34-226 (535)
205 PF00308 Bac_DnaA: Bacterial d 99.4 1.8E-11 3.9E-16 123.8 16.2 202 213-452 3-214 (219)
206 CHL00095 clpC Clp protease ATP 99.4 5.3E-12 1.2E-16 151.4 14.3 173 533-714 198-400 (821)
207 TIGR03345 VI_ClpV1 type VI sec 99.3 1.2E-11 2.5E-16 147.8 17.0 173 533-714 206-409 (852)
208 PRK07133 DNA polymerase III su 99.3 2.8E-11 6E-16 139.1 19.3 198 214-452 14-225 (725)
209 PLN03025 replication factor C 99.3 3.8E-11 8.1E-16 129.0 19.3 190 214-448 9-202 (319)
210 PRK14965 DNA polymerase III su 99.3 2.6E-11 5.5E-16 139.4 19.1 193 214-453 12-227 (576)
211 PRK08727 hypothetical protein; 99.3 4.5E-11 9.7E-16 122.3 18.8 188 213-451 14-209 (233)
212 PRK12422 chromosomal replicati 99.3 1.5E-11 3.2E-16 136.8 16.3 168 534-712 140-318 (445)
213 PRK14965 DNA polymerase III su 99.3 2.2E-11 4.9E-16 139.9 18.2 187 514-738 22-240 (576)
214 COG3829 RocR Transcriptional r 99.3 7.4E-12 1.6E-16 136.2 13.4 191 504-715 245-479 (560)
215 PRK05642 DNA replication initi 99.3 4.5E-11 9.8E-16 122.3 18.5 197 213-455 14-217 (234)
216 TIGR02640 gas_vesic_GvpN gas v 99.3 1.9E-11 4E-16 127.4 15.4 133 255-413 21-198 (262)
217 PRK14088 dnaA chromosomal repl 99.3 1.4E-11 3E-16 137.3 15.1 168 535-713 130-311 (440)
218 PHA02544 44 clamp loader, smal 99.3 4.7E-11 1E-15 128.4 18.6 159 214-415 17-175 (316)
219 PRK14955 DNA polymerase III su 99.3 3.5E-11 7.7E-16 132.8 17.7 179 533-739 36-254 (397)
220 PRK09111 DNA polymerase III su 99.3 5.7E-11 1.2E-15 135.9 19.5 182 533-740 44-255 (598)
221 PRK00440 rfc replication facto 99.3 8.5E-11 1.8E-15 126.5 19.7 171 536-740 39-224 (319)
222 PHA02544 44 clamp loader, smal 99.3 1.4E-10 2.9E-15 124.8 21.2 157 534-712 42-214 (316)
223 PRK14959 DNA polymerase III su 99.3 4.2E-11 9E-16 135.8 17.8 189 214-449 12-223 (624)
224 PRK14952 DNA polymerase III su 99.3 6.2E-11 1.3E-15 134.9 19.3 199 214-453 9-226 (584)
225 TIGR00382 clpX endopeptidase C 99.3 4.1E-11 8.9E-16 130.6 17.0 229 222-458 79-388 (413)
226 PRK14953 DNA polymerase III su 99.3 9.7E-11 2.1E-15 131.5 20.5 199 214-453 12-227 (486)
227 PRK06647 DNA polymerase III su 99.3 6.2E-11 1.3E-15 135.1 19.2 174 533-739 36-241 (563)
228 PRK14087 dnaA chromosomal repl 99.3 4.1E-11 8.9E-16 133.7 17.3 228 214-487 111-348 (450)
229 PRK14953 DNA polymerase III su 99.3 7.2E-11 1.6E-15 132.6 19.3 181 534-740 37-242 (486)
230 TIGR00382 clpX endopeptidase C 99.3 4.8E-11 1E-15 130.1 16.8 179 535-714 116-383 (413)
231 PRK14970 DNA polymerase III su 99.3 1.4E-10 3E-15 127.3 20.5 168 533-715 37-217 (367)
232 PRK06305 DNA polymerase III su 99.3 1.2E-10 2.7E-15 129.9 20.2 159 533-713 37-228 (451)
233 PRK07764 DNA polymerase III su 99.3 6.9E-11 1.5E-15 139.5 18.9 197 214-451 11-226 (824)
234 PRK14970 DNA polymerase III su 99.3 1.7E-10 3.8E-15 126.6 20.8 196 213-453 12-216 (367)
235 TIGR01650 PD_CobS cobaltochela 99.3 1.4E-11 3E-16 129.2 11.2 140 254-415 63-235 (327)
236 PRK14948 DNA polymerase III su 99.3 1.2E-10 2.6E-15 134.3 19.9 165 534-713 37-228 (620)
237 KOG1514 Origin recognition com 99.3 1.1E-10 2.4E-15 129.6 18.7 200 534-743 421-656 (767)
238 PF05621 TniB: Bacterial TniB 99.3 3.2E-11 7E-16 124.1 13.5 219 498-738 28-285 (302)
239 PRK08727 hypothetical protein; 99.3 5.6E-11 1.2E-15 121.6 15.2 177 536-740 42-229 (233)
240 COG2204 AtoC Response regulato 99.3 2.6E-11 5.6E-16 132.4 13.1 168 535-717 164-376 (464)
241 PRK14954 DNA polymerase III su 99.3 1.4E-10 3.1E-15 132.9 19.7 185 533-739 36-254 (620)
242 KOG1969 DNA replication checkp 99.3 6.3E-11 1.4E-15 131.7 15.9 164 534-717 325-520 (877)
243 PRK06647 DNA polymerase III su 99.3 1.1E-10 2.4E-15 133.0 18.4 199 214-453 12-227 (563)
244 PF05673 DUF815: Protein of un 99.3 3.5E-10 7.7E-15 113.0 19.6 166 212-417 21-211 (249)
245 PRK14955 DNA polymerase III su 99.3 1.4E-10 3E-15 128.2 18.0 200 214-454 12-236 (397)
246 TIGR02903 spore_lon_C ATP-depe 99.3 1.5E-10 3.3E-15 133.9 19.2 232 214-487 150-430 (615)
247 PRK04132 replication factor C 99.3 1E-10 2.2E-15 137.2 17.6 159 534-714 563-738 (846)
248 PRK14086 dnaA chromosomal repl 99.3 8E-11 1.7E-15 132.8 16.3 166 536-713 315-494 (617)
249 PRK06305 DNA polymerase III su 99.3 2E-10 4.4E-15 128.2 19.4 197 214-451 13-227 (451)
250 PRK05642 DNA replication initi 99.3 1E-10 2.3E-15 119.6 15.5 178 535-740 45-233 (234)
251 TIGR03346 chaperone_ClpB ATP-d 99.3 4.5E-11 9.8E-16 143.9 14.7 173 533-714 192-395 (852)
252 PRK14971 DNA polymerase III su 99.3 2.9E-10 6.3E-15 131.1 20.6 161 533-715 37-230 (614)
253 PRK10865 protein disaggregatio 99.2 4.6E-11 1E-15 143.2 14.5 140 533-681 197-353 (857)
254 PRK08451 DNA polymerase III su 99.2 2.3E-10 5E-15 128.4 18.6 199 214-454 10-226 (535)
255 PRK14954 DNA polymerase III su 99.2 4.1E-10 8.8E-15 129.2 20.9 200 214-454 12-236 (620)
256 COG1220 HslU ATP-dependent pro 99.2 1.5E-10 3.2E-15 118.1 15.2 146 596-743 251-434 (444)
257 PRK09111 DNA polymerase III su 99.2 4.2E-10 9.1E-15 128.9 20.0 199 214-453 20-240 (598)
258 PRK14948 DNA polymerase III su 99.2 3.6E-10 7.8E-15 130.3 19.5 195 214-449 12-225 (620)
259 PRK14087 dnaA chromosomal repl 99.2 1.9E-10 4E-15 128.4 16.7 191 533-741 139-347 (450)
260 PRK06620 hypothetical protein; 99.2 1.7E-10 3.8E-15 116.0 14.9 180 212-451 10-194 (214)
261 PRK13407 bchI magnesium chelat 99.2 1.6E-10 3.5E-15 123.2 15.1 170 213-413 3-216 (334)
262 PRK00440 rfc replication facto 99.2 7.7E-10 1.7E-14 119.1 20.4 209 214-486 13-225 (319)
263 PRK09087 hypothetical protein; 99.2 1.3E-10 2.9E-15 117.9 13.4 171 536-743 45-223 (226)
264 COG2812 DnaX DNA polymerase II 99.2 1.7E-10 3.7E-15 127.9 14.9 168 533-715 36-228 (515)
265 COG2812 DnaX DNA polymerase II 99.2 2.1E-10 4.5E-15 127.1 15.4 200 214-454 12-228 (515)
266 COG5271 MDN1 AAA ATPase contai 99.2 1.6E-09 3.6E-14 127.3 22.9 144 533-688 1541-1709(4600)
267 TIGR00678 holB DNA polymerase 99.2 2.6E-10 5.6E-15 112.9 14.2 148 533-703 12-187 (188)
268 PF00308 Bac_DnaA: Bacterial d 99.2 4.9E-10 1.1E-14 113.3 15.6 175 527-713 26-214 (219)
269 PRK14950 DNA polymerase III su 99.2 9.2E-10 2E-14 127.3 19.7 181 534-740 37-243 (585)
270 COG0593 DnaA ATPase involved i 99.2 6E-10 1.3E-14 120.1 16.1 199 525-743 103-314 (408)
271 KOG0991 Replication factor C, 99.2 2.1E-10 4.5E-15 111.3 10.9 164 533-715 46-222 (333)
272 TIGR02974 phageshock_pspF psp 99.2 2.9E-10 6.4E-15 122.0 13.3 170 534-716 21-234 (329)
273 PF05673 DUF815: Protein of un 99.1 7.3E-10 1.6E-14 110.7 14.8 130 533-681 50-206 (249)
274 COG0593 DnaA ATPase involved i 99.1 1.8E-09 4E-14 116.4 18.8 226 213-490 82-316 (408)
275 COG3604 FhlA Transcriptional r 99.1 3.1E-10 6.7E-15 122.0 12.5 195 501-715 220-456 (550)
276 PRK14950 DNA polymerase III su 99.1 1.8E-09 3.9E-14 124.9 19.9 197 214-451 12-226 (585)
277 CHL00081 chlI Mg-protoporyphyr 99.1 5.9E-10 1.3E-14 119.0 14.3 170 213-413 12-232 (350)
278 PRK09112 DNA polymerase III su 99.1 1.6E-09 3.4E-14 116.9 17.7 163 533-710 43-243 (351)
279 TIGR01650 PD_CobS cobaltochela 99.1 4.4E-10 9.4E-15 118.1 12.8 168 535-713 64-282 (327)
280 cd00009 AAA The AAA+ (ATPases 99.1 1E-09 2.2E-14 103.0 14.0 126 254-398 18-150 (151)
281 TIGR01817 nifA Nif-specific re 99.1 4E-10 8.7E-15 129.7 13.3 193 503-716 195-429 (534)
282 TIGR00602 rad24 checkpoint pro 99.1 6.8E-10 1.5E-14 127.1 14.9 169 534-714 109-330 (637)
283 PRK05707 DNA polymerase III su 99.1 1.6E-09 3.5E-14 115.9 16.7 160 532-707 19-203 (328)
284 TIGR00678 holB DNA polymerase 99.1 1.3E-09 2.8E-14 107.9 14.6 153 255-438 14-184 (188)
285 PRK09087 hypothetical protein; 99.1 6.4E-10 1.4E-14 113.0 12.4 201 213-486 16-221 (226)
286 PRK13531 regulatory ATPase Rav 99.1 8.3E-10 1.8E-14 121.1 14.0 188 535-743 39-284 (498)
287 TIGR02030 BchI-ChlI magnesium 99.1 1.4E-09 3.1E-14 116.2 15.3 168 215-413 1-219 (337)
288 PRK13407 bchI magnesium chelat 99.1 6.7E-10 1.5E-14 118.4 12.7 190 536-742 30-306 (334)
289 PRK11331 5-methylcytosine-spec 99.1 8.6E-10 1.9E-14 120.0 13.3 124 255-399 194-357 (459)
290 PRK14971 DNA polymerase III su 99.1 4.6E-09 1E-13 121.3 20.1 200 214-454 13-230 (614)
291 COG1219 ClpX ATP-dependent pro 99.1 1.8E-09 3.9E-14 109.6 14.4 178 536-713 98-365 (408)
292 PRK11608 pspF phage shock prot 99.1 1.5E-09 3.2E-14 116.7 14.9 190 506-716 8-241 (326)
293 PRK11388 DNA-binding transcrip 99.1 7.7E-10 1.7E-14 130.2 13.6 191 505-716 326-555 (638)
294 PHA02244 ATPase-like protein 99.1 1.6E-09 3.5E-14 114.9 14.6 132 254-409 118-269 (383)
295 KOG1969 DNA replication checkp 99.1 2.4E-09 5.1E-14 119.4 16.2 175 253-456 324-517 (877)
296 PRK15424 propionate catabolism 99.1 1.5E-09 3.3E-14 122.7 15.1 168 535-715 242-465 (538)
297 TIGR03015 pepcterm_ATPase puta 99.1 4.2E-09 9E-14 110.5 17.6 191 535-743 43-267 (269)
298 PF07728 AAA_5: AAA domain (dy 99.1 8.9E-11 1.9E-15 110.2 3.7 116 257-391 1-139 (139)
299 cd00009 AAA The AAA+ (ATPases 99.1 2.3E-09 5E-14 100.5 13.4 124 534-668 18-151 (151)
300 PRK15429 formate hydrogenlyase 99.1 3.7E-09 8E-14 125.2 18.1 192 505-717 377-611 (686)
301 KOG2227 Pre-initiation complex 99.1 2.1E-09 4.5E-14 114.7 14.0 222 505-743 151-416 (529)
302 TIGR02329 propionate_PrpR prop 99.0 2.3E-09 5E-14 121.4 15.2 168 535-715 235-450 (526)
303 COG1221 PspF Transcriptional r 99.0 2E-09 4.4E-14 115.7 13.1 192 504-716 78-310 (403)
304 PRK07471 DNA polymerase III su 99.0 7.2E-09 1.6E-13 112.4 17.5 162 533-709 39-240 (365)
305 PRK09112 DNA polymerase III su 99.0 1.3E-08 2.9E-13 109.7 19.3 186 214-441 19-236 (351)
306 smart00382 AAA ATPases associa 99.0 2.1E-09 4.6E-14 99.8 11.0 128 535-669 2-147 (148)
307 PRK07471 DNA polymerase III su 99.0 1.8E-08 3.9E-13 109.3 19.4 184 214-441 15-234 (365)
308 PRK05564 DNA polymerase III su 99.0 8.3E-09 1.8E-13 110.6 16.5 181 216-441 2-186 (313)
309 PF07724 AAA_2: AAA domain (Cd 99.0 9.6E-10 2.1E-14 106.5 8.0 114 533-649 1-131 (171)
310 PRK05022 anaerobic nitric oxid 99.0 4.9E-09 1.1E-13 119.7 15.2 193 504-717 187-422 (509)
311 COG0714 MoxR-like ATPases [Gen 99.0 3.9E-09 8.4E-14 114.0 13.6 139 254-412 42-202 (329)
312 COG1220 HslU ATP-dependent pro 99.0 1.2E-08 2.5E-13 104.6 15.6 81 326-410 253-346 (444)
313 TIGR03015 pepcterm_ATPase puta 99.0 4.8E-09 1E-13 110.0 13.5 199 257-488 45-267 (269)
314 smart00382 AAA ATPases associa 99.0 3.8E-09 8.2E-14 98.2 11.4 127 255-400 2-147 (148)
315 PRK10820 DNA-binding transcrip 99.0 1.5E-08 3.3E-13 115.7 18.3 192 505-717 205-439 (520)
316 TIGR02030 BchI-ChlI magnesium 99.0 2.6E-09 5.6E-14 114.2 11.0 130 596-743 132-310 (337)
317 COG0470 HolB ATPase involved i 99.0 8.6E-09 1.9E-13 111.2 15.1 153 537-714 26-206 (325)
318 TIGR02442 Cob-chelat-sub cobal 99.0 8.6E-09 1.9E-13 120.3 16.1 164 216-412 2-213 (633)
319 PHA02244 ATPase-like protein 99.0 2.9E-08 6.4E-13 105.4 18.2 155 536-710 120-306 (383)
320 COG1224 TIP49 DNA helicase TIP 99.0 4E-08 8.7E-13 101.4 18.5 129 323-486 291-431 (450)
321 KOG0745 Putative ATP-dependent 98.9 1.5E-08 3.2E-13 106.9 15.3 181 536-716 227-509 (564)
322 TIGR00764 lon_rel lon-related 98.9 1.7E-08 3.7E-13 116.6 17.4 106 368-488 268-392 (608)
323 PRK05707 DNA polymerase III su 98.9 1.4E-08 3.1E-13 108.6 15.3 159 254-441 21-199 (328)
324 PRK07399 DNA polymerase III su 98.9 2.6E-08 5.6E-13 106.0 17.0 185 216-444 2-220 (314)
325 PF07724 AAA_2: AAA domain (Cd 98.9 2.9E-09 6.4E-14 103.1 8.8 118 254-379 2-131 (171)
326 CHL00081 chlI Mg-protoporyphyr 98.9 3.6E-08 7.9E-13 105.4 17.7 131 596-743 145-323 (350)
327 PRK07993 DNA polymerase III su 98.9 2E-08 4.4E-13 107.7 15.9 160 533-708 22-205 (334)
328 PRK08058 DNA polymerase III su 98.9 1.9E-08 4.1E-13 108.3 15.6 157 533-707 26-204 (329)
329 PF07728 AAA_5: AAA domain (dy 98.9 2.6E-10 5.6E-15 107.1 1.0 112 537-660 1-139 (139)
330 TIGR02442 Cob-chelat-sub cobal 98.9 1.5E-08 3.2E-13 118.3 15.5 186 536-743 26-305 (633)
331 COG1219 ClpX ATP-dependent pro 98.9 6E-09 1.3E-13 105.9 10.2 103 256-363 98-203 (408)
332 PRK08769 DNA polymerase III su 98.9 2.7E-08 5.9E-13 105.5 15.4 155 533-704 24-205 (319)
333 COG1224 TIP49 DNA helicase TIP 98.9 6.1E-08 1.3E-12 100.1 17.1 123 596-740 292-430 (450)
334 PRK07399 DNA polymerase III su 98.9 3.7E-08 8E-13 104.9 16.4 163 533-711 24-225 (314)
335 PRK13531 regulatory ATPase Rav 98.9 1.1E-08 2.5E-13 112.3 12.3 139 254-412 38-193 (498)
336 TIGR02031 BchD-ChlD magnesium 98.9 2E-08 4.4E-13 115.8 14.4 189 535-743 16-259 (589)
337 COG2607 Predicted ATPase (AAA+ 98.9 1.2E-07 2.6E-12 93.2 17.4 165 213-417 55-243 (287)
338 PRK06964 DNA polymerase III su 98.9 5.6E-08 1.2E-12 104.0 16.4 158 531-707 17-225 (342)
339 PRK08058 DNA polymerase III su 98.9 4.6E-08 9.9E-13 105.3 15.7 155 222-411 8-180 (329)
340 PRK05564 DNA polymerase III su 98.9 4.2E-08 9.1E-13 105.2 15.3 151 533-704 24-187 (313)
341 PRK11608 pspF phage shock prot 98.9 2E-08 4.4E-13 107.9 12.8 195 222-454 8-240 (326)
342 COG3829 RocR Transcriptional r 98.8 1.1E-08 2.4E-13 111.8 10.7 199 213-452 240-477 (560)
343 PRK06871 DNA polymerase III su 98.8 1.1E-07 2.3E-12 101.1 17.5 159 533-707 22-203 (325)
344 COG0714 MoxR-like ATPases [Gen 98.8 4E-09 8.7E-14 113.8 6.9 137 535-681 43-202 (329)
345 PRK15115 response regulator Gl 98.8 1.1E-08 2.5E-13 115.3 10.9 167 535-716 157-368 (444)
346 COG0542 clpA ATP-binding subun 98.8 2.5E-08 5.4E-13 114.9 13.3 138 536-680 192-344 (786)
347 smart00350 MCM minichromosome 98.8 4.3E-08 9.4E-13 111.7 15.1 137 255-413 236-400 (509)
348 TIGR02974 phageshock_pspF psp 98.8 3.1E-08 6.8E-13 106.4 13.1 180 254-454 21-233 (329)
349 TIGR02915 PEP_resp_reg putativ 98.8 3.4E-08 7.3E-13 111.5 14.0 169 535-717 162-374 (445)
350 PRK11331 5-methylcytosine-spec 98.8 2.6E-08 5.7E-13 108.6 12.2 135 535-680 194-370 (459)
351 COG0470 HolB ATPase involved i 98.8 8E-08 1.7E-12 103.6 16.1 129 257-409 26-177 (325)
352 PF05621 TniB: Bacterial TniB 98.8 1.8E-07 4E-12 96.6 17.6 184 254-457 60-272 (302)
353 PF00158 Sigma54_activat: Sigm 98.8 5E-09 1.1E-13 101.2 5.5 112 535-661 22-155 (168)
354 PF01078 Mg_chelatase: Magnesi 98.8 4.1E-09 8.9E-14 103.3 4.6 47 216-280 1-47 (206)
355 TIGR01817 nifA Nif-specific re 98.8 5.4E-08 1.2E-12 112.2 14.5 206 214-454 192-428 (534)
356 KOG0991 Replication factor C, 98.8 5.3E-08 1.1E-12 94.9 11.6 180 214-437 23-206 (333)
357 COG2607 Predicted ATPase (AAA+ 98.8 8.5E-08 1.8E-12 94.2 13.0 155 502-681 58-238 (287)
358 PRK04132 replication factor C 98.8 1E-07 2.2E-12 112.2 16.3 164 258-451 567-736 (846)
359 TIGR02031 BchD-ChlD magnesium 98.8 8.1E-08 1.8E-12 110.9 15.3 138 256-413 17-174 (589)
360 PRK10923 glnG nitrogen regulat 98.8 1.4E-07 3.1E-12 107.2 17.0 170 535-717 161-373 (469)
361 KOG0745 Putative ATP-dependent 98.8 3E-08 6.4E-13 104.6 10.0 102 256-362 227-331 (564)
362 PRK15429 formate hydrogenlyase 98.8 1.1E-07 2.5E-12 112.6 16.2 199 214-454 372-609 (686)
363 PRK05022 anaerobic nitric oxid 98.8 8.1E-08 1.8E-12 109.7 14.3 199 216-455 185-421 (509)
364 PRK11388 DNA-binding transcrip 98.7 3.3E-08 7.2E-13 116.4 11.2 204 214-453 321-553 (638)
365 TIGR00602 rad24 checkpoint pro 98.7 2.1E-07 4.6E-12 106.9 17.3 205 214-449 80-323 (637)
366 TIGR02329 propionate_PrpR prop 98.7 5.9E-08 1.3E-12 110.0 12.4 200 214-454 208-450 (526)
367 PRK08769 DNA polymerase III su 98.7 3.7E-07 8E-12 96.9 17.6 158 255-443 26-206 (319)
368 PRK06871 DNA polymerase III su 98.7 3.4E-07 7.3E-12 97.4 17.3 156 255-440 24-198 (325)
369 PF13177 DNA_pol3_delta2: DNA 98.7 1.1E-07 2.3E-12 91.6 12.3 141 224-399 1-160 (162)
370 PRK10820 DNA-binding transcrip 98.7 8.1E-08 1.8E-12 109.8 13.5 201 213-454 199-437 (520)
371 PRK06090 DNA polymerase III su 98.7 3E-07 6.6E-12 97.5 16.8 136 532-682 22-180 (319)
372 PF07726 AAA_3: ATPase family 98.7 5.6E-09 1.2E-13 93.9 3.1 101 537-650 1-115 (131)
373 COG1221 PspF Transcriptional r 98.7 5.7E-08 1.2E-12 104.6 11.4 202 214-456 74-311 (403)
374 PRK06964 DNA polymerase III su 98.7 7.6E-08 1.7E-12 103.0 12.3 138 253-412 19-203 (342)
375 PF13177 DNA_pol3_delta2: DNA 98.7 5.8E-08 1.2E-12 93.5 10.3 123 533-670 17-162 (162)
376 TIGR01818 ntrC nitrogen regula 98.7 1.2E-07 2.5E-12 107.8 14.6 170 535-717 157-369 (463)
377 PRK15424 propionate catabolism 98.7 6.8E-08 1.5E-12 109.4 12.5 199 214-453 215-464 (538)
378 KOG2035 Replication factor C, 98.7 4.8E-07 1E-11 90.6 16.6 187 533-742 32-258 (351)
379 PRK08116 hypothetical protein; 98.7 5.4E-08 1.2E-12 101.5 10.4 133 254-412 113-259 (268)
380 TIGR00764 lon_rel lon-related 98.7 4.2E-07 9.1E-12 105.2 18.5 127 597-741 219-390 (608)
381 PRK11361 acetoacetate metaboli 98.7 1.4E-07 3E-12 107.0 14.0 168 535-716 166-377 (457)
382 PF07726 AAA_3: ATPase family 98.7 5.3E-09 1.1E-13 94.1 1.8 113 257-392 1-130 (131)
383 PF03215 Rad17: Rad17 cell cyc 98.7 4E-07 8.6E-12 102.8 17.2 189 511-713 26-269 (519)
384 TIGR00368 Mg chelatase-related 98.7 1.3E-07 2.8E-12 106.5 13.1 183 534-740 210-497 (499)
385 KOG0990 Replication factor C, 98.7 2.4E-07 5.1E-12 94.9 13.5 166 533-717 60-242 (360)
386 KOG1514 Origin recognition com 98.7 1.3E-06 2.9E-11 97.8 20.0 204 257-489 424-657 (767)
387 PRK07993 DNA polymerase III su 98.7 3.9E-07 8.5E-12 97.8 15.5 158 255-442 24-201 (334)
388 TIGR00368 Mg chelatase-related 98.7 2.1E-07 4.5E-12 104.8 13.5 48 214-279 188-235 (499)
389 PF00158 Sigma54_activat: Sigm 98.6 5.4E-08 1.2E-12 94.0 7.1 100 255-378 22-144 (168)
390 PRK10365 transcriptional regul 98.6 1.2E-07 2.7E-12 106.8 11.1 168 534-716 161-373 (441)
391 smart00350 MCM minichromosome 98.6 1.5E-07 3.2E-12 107.4 11.7 184 536-740 237-502 (509)
392 PF06068 TIP49: TIP49 C-termin 98.6 4.2E-07 9.1E-12 95.7 13.8 63 221-294 25-90 (398)
393 COG1239 ChlI Mg-chelatase subu 98.6 2.5E-07 5.5E-12 98.7 12.3 169 214-414 13-233 (423)
394 PF12775 AAA_7: P-loop contain 98.6 1E-07 2.2E-12 99.4 8.7 148 253-416 31-196 (272)
395 PF06068 TIP49: TIP49 C-termin 98.6 4.4E-07 9.5E-12 95.6 13.1 102 596-712 279-396 (398)
396 COG3283 TyrR Transcriptional r 98.6 2.6E-07 5.6E-12 95.4 11.1 167 536-717 228-434 (511)
397 smart00763 AAA_PrkA PrkA AAA d 98.6 9E-07 2E-11 94.3 15.6 59 222-289 53-118 (361)
398 PRK09862 putative ATP-dependen 98.6 6.8E-07 1.5E-11 100.2 15.4 124 253-402 208-390 (506)
399 PRK08699 DNA polymerase III su 98.6 6.3E-07 1.4E-11 95.9 14.1 135 532-682 18-185 (325)
400 COG2204 AtoC Response regulato 98.6 4E-07 8.6E-12 99.9 12.4 195 222-456 143-376 (464)
401 PRK09862 putative ATP-dependen 98.6 7.7E-07 1.7E-11 99.8 14.5 183 534-740 209-490 (506)
402 TIGR02655 circ_KaiC circadian 98.6 1.7E-06 3.6E-11 98.2 17.4 83 526-608 254-366 (484)
403 PF01637 Arch_ATPase: Archaeal 98.5 3.9E-07 8.5E-12 92.9 10.6 183 224-440 3-229 (234)
404 PRK08699 DNA polymerase III su 98.5 6.4E-07 1.4E-11 95.8 12.2 137 253-411 19-183 (325)
405 PRK06090 DNA polymerase III su 98.5 1.9E-06 4.1E-11 91.5 15.3 135 255-411 25-178 (319)
406 KOG1942 DNA helicase, TBP-inte 98.5 2.4E-06 5.2E-11 86.1 14.9 123 596-740 297-436 (456)
407 KOG2227 Pre-initiation complex 98.5 4.7E-06 1E-10 89.5 17.3 204 221-455 151-380 (529)
408 KOG1942 DNA helicase, TBP-inte 98.5 4.7E-06 1E-10 84.0 16.1 107 323-451 296-415 (456)
409 KOG1970 Checkpoint RAD17-RFC c 98.5 7.8E-06 1.7E-10 89.4 18.8 190 511-712 89-320 (634)
410 COG3604 FhlA Transcriptional r 98.5 3.1E-07 6.8E-12 99.2 8.2 208 221-458 224-459 (550)
411 PRK08181 transposase; Validate 98.5 2.5E-07 5.5E-12 96.0 6.7 102 254-378 105-209 (269)
412 COG3284 AcoR Transcriptional a 98.5 4.4E-07 9.4E-12 101.3 8.9 168 536-718 337-543 (606)
413 PRK06526 transposase; Provisio 98.5 2.4E-07 5.3E-12 95.6 6.4 102 254-378 97-201 (254)
414 PRK12377 putative replication 98.4 5.1E-07 1.1E-11 92.5 8.3 102 255-378 101-206 (248)
415 TIGR02915 PEP_resp_reg putativ 98.4 9.8E-07 2.1E-11 99.7 10.7 178 255-454 162-372 (445)
416 PF14532 Sigma54_activ_2: Sigm 98.4 5.1E-07 1.1E-11 84.6 6.9 109 534-669 20-138 (138)
417 PRK07952 DNA replication prote 98.4 7.4E-07 1.6E-11 91.2 8.0 101 256-378 100-205 (244)
418 PF12774 AAA_6: Hydrolytic ATP 98.4 1.2E-05 2.5E-10 81.8 16.5 164 536-715 33-227 (231)
419 PF13173 AAA_14: AAA domain 98.4 2.8E-06 6.1E-11 78.4 10.9 119 256-404 3-126 (128)
420 PRK05818 DNA polymerase III su 98.4 5.1E-06 1.1E-10 84.7 13.6 159 533-711 5-194 (261)
421 PRK08939 primosomal protein Dn 98.4 7E-07 1.5E-11 94.7 7.3 102 254-378 155-261 (306)
422 PRK09183 transposase/IS protei 98.4 7.8E-07 1.7E-11 92.4 7.5 75 253-336 100-177 (259)
423 PRK08116 hypothetical protein; 98.4 1.3E-06 2.9E-11 91.1 9.3 144 514-670 94-250 (268)
424 PRK13765 ATP-dependent proteas 98.4 5.4E-06 1.2E-10 95.7 15.0 50 213-280 26-75 (637)
425 COG1484 DnaC DNA replication p 98.4 1.6E-06 3.4E-11 89.6 9.6 70 254-336 104-180 (254)
426 PRK12377 putative replication 98.3 2.1E-06 4.5E-11 88.1 10.0 120 513-648 83-206 (248)
427 PF13401 AAA_22: AAA domain; P 98.3 1.5E-06 3.3E-11 80.3 8.2 100 535-646 4-126 (131)
428 PF13401 AAA_22: AAA domain; P 98.3 2.1E-06 4.6E-11 79.3 9.2 88 254-361 3-113 (131)
429 PF01695 IstB_IS21: IstB-like 98.3 4.6E-07 9.9E-12 88.6 4.4 73 253-335 45-120 (178)
430 COG1239 ChlI Mg-chelatase subu 98.3 7.7E-06 1.7E-10 87.6 13.9 75 595-680 144-230 (423)
431 PF13173 AAA_14: AAA domain 98.3 3.4E-06 7.3E-11 77.9 9.9 120 536-674 3-127 (128)
432 PRK08181 transposase; Validate 98.3 1.1E-06 2.4E-11 91.2 7.3 101 535-648 106-209 (269)
433 PF03215 Rad17: Rad17 cell cyc 98.3 2E-05 4.3E-10 89.2 17.9 214 214-455 15-269 (519)
434 KOG0990 Replication factor C, 98.3 3.3E-06 7.1E-11 86.7 9.9 136 257-414 64-204 (360)
435 COG5245 DYN1 Dynein, heavy cha 98.3 2.1E-05 4.5E-10 93.6 17.6 190 251-455 1490-1717(3164)
436 PRK06921 hypothetical protein; 98.3 5.7E-06 1.2E-10 86.2 12.0 41 254-294 116-159 (266)
437 PRK09302 circadian clock prote 98.3 2.9E-05 6.3E-10 89.1 18.9 39 251-289 27-68 (509)
438 KOG2035 Replication factor C, 98.3 1.4E-05 3E-10 80.4 13.7 160 257-437 36-220 (351)
439 PRK06835 DNA replication prote 98.3 1.4E-06 3.1E-11 93.1 7.0 70 256-335 184-258 (329)
440 PRK06526 transposase; Provisio 98.2 1.2E-06 2.6E-11 90.5 5.8 100 535-648 98-201 (254)
441 PRK11361 acetoacetate metaboli 98.2 4.2E-06 9.2E-11 94.8 10.7 177 255-453 166-375 (457)
442 PF01637 Arch_ATPase: Archaeal 98.2 9.5E-06 2.1E-10 82.6 12.3 157 534-695 19-223 (234)
443 PRK05917 DNA polymerase III su 98.2 1.5E-05 3.3E-10 83.0 13.7 123 533-670 17-155 (290)
444 PTZ00111 DNA replication licen 98.2 5.9E-06 1.3E-10 97.1 11.8 123 534-670 491-645 (915)
445 COG0606 Predicted ATPase with 98.2 1.3E-06 2.7E-11 94.8 5.6 48 214-279 175-222 (490)
446 PRK08939 primosomal protein Dn 98.2 4.5E-06 9.8E-11 88.6 9.8 71 534-606 155-228 (306)
447 PRK10923 glnG nitrogen regulat 98.2 9.6E-06 2.1E-10 92.2 13.2 180 254-454 160-371 (469)
448 PF01078 Mg_chelatase: Magnesi 98.2 8.5E-07 1.8E-11 87.2 3.8 23 536-558 23-45 (206)
449 PF14532 Sigma54_activ_2: Sigm 98.2 1.8E-06 3.8E-11 80.9 5.8 88 254-377 20-109 (138)
450 PRK07132 DNA polymerase III su 98.2 4E-05 8.7E-10 80.9 16.2 149 534-706 17-183 (299)
451 TIGR01818 ntrC nitrogen regula 98.2 7.4E-06 1.6E-10 93.0 11.5 179 255-454 157-367 (463)
452 KOG1051 Chaperone HSP104 and r 98.2 4E-05 8.6E-10 90.1 17.2 127 222-377 564-710 (898)
453 COG1484 DnaC DNA replication p 98.2 4.5E-06 9.7E-11 86.3 8.4 82 516-607 91-179 (254)
454 PRK09183 transposase/IS protei 98.2 3.5E-06 7.5E-11 87.6 7.6 103 534-648 101-206 (259)
455 PTZ00111 DNA replication licen 98.2 7E-06 1.5E-10 96.5 10.6 137 253-410 490-654 (915)
456 PRK13406 bchD magnesium chelat 98.2 9.7E-06 2.1E-10 93.0 11.3 187 535-743 25-251 (584)
457 PRK07952 DNA replication prote 98.1 6.7E-06 1.5E-10 84.1 8.6 87 515-608 83-175 (244)
458 PRK06921 hypothetical protein; 98.1 1.5E-05 3.2E-10 83.1 11.1 123 515-647 97-224 (266)
459 PF05729 NACHT: NACHT domain 98.1 1.5E-05 3.3E-10 76.5 10.4 141 257-414 2-164 (166)
460 COG0606 Predicted ATPase with 98.1 8E-06 1.7E-10 88.6 9.1 36 698-740 448-483 (490)
461 PRK07276 DNA polymerase III su 98.1 4.7E-05 1E-09 79.7 14.6 155 533-708 22-198 (290)
462 COG3267 ExeA Type II secretory 98.1 5.7E-05 1.2E-09 75.7 14.1 186 253-456 48-255 (269)
463 PRK15115 response regulator Gl 98.1 1.2E-05 2.5E-10 90.9 10.6 177 255-453 157-366 (444)
464 PF01695 IstB_IS21: IstB-like 98.1 1.5E-06 3.2E-11 84.9 2.8 102 534-648 46-150 (178)
465 PRK13765 ATP-dependent proteas 98.1 3.8E-05 8.3E-10 88.8 14.0 126 597-740 228-398 (637)
466 PRK06835 DNA replication prote 98.1 1.1E-05 2.5E-10 86.2 8.7 118 513-647 165-288 (329)
467 PRK05917 DNA polymerase III su 98.0 2.6E-05 5.6E-10 81.3 10.8 124 255-400 19-154 (290)
468 PF02933 CDC48_2: Cell divisio 98.0 1.4E-05 2.9E-10 64.0 6.7 58 124-190 2-59 (64)
469 KOG2680 DNA helicase TIP49, TB 98.0 0.00018 3.8E-09 73.2 15.3 129 323-486 288-428 (454)
470 PF00910 RNA_helicase: RNA hel 98.0 1.2E-05 2.6E-10 71.7 6.4 23 258-280 1-23 (107)
471 PF03969 AFG1_ATPase: AFG1-lik 98.0 2.1E-05 4.5E-10 85.2 9.5 103 252-378 59-168 (362)
472 PF12774 AAA_6: Hydrolytic ATP 98.0 3.8E-05 8.3E-10 78.0 10.6 128 254-409 31-176 (231)
473 KOG2680 DNA helicase TIP49, TB 98.0 0.00017 3.7E-09 73.3 14.7 73 662-741 351-428 (454)
474 KOG2228 Origin recognition com 98.0 4.2E-05 9E-10 79.1 10.5 160 507-682 27-219 (408)
475 PRK10365 transcriptional regul 98.0 1.6E-05 3.6E-10 89.6 8.5 178 254-453 161-371 (441)
476 KOG1968 Replication factor C, 98.0 2.5E-05 5.5E-10 92.5 10.1 162 537-712 359-536 (871)
477 PF00931 NB-ARC: NB-ARC domain 98.0 0.00011 2.3E-09 77.8 14.1 158 253-440 17-197 (287)
478 KOG2228 Origin recognition com 98.0 5.7E-05 1.2E-09 78.1 11.2 166 222-413 26-219 (408)
479 PRK13406 bchD magnesium chelat 97.9 4.2E-05 9.2E-10 87.8 10.8 199 256-487 26-250 (584)
480 PRK06851 hypothetical protein; 97.9 0.00011 2.3E-09 79.4 13.2 34 536-569 215-251 (367)
481 PRK05818 DNA polymerase III su 97.9 6.9E-05 1.5E-09 76.5 11.0 127 253-400 5-147 (261)
482 COG1618 Predicted nucleotide k 97.9 0.00015 3.3E-09 67.5 12.1 29 253-281 3-31 (179)
483 COG3283 TyrR Transcriptional r 97.9 9.8E-05 2.1E-09 76.8 12.0 203 213-454 199-432 (511)
484 cd01120 RecA-like_NTPases RecA 97.9 9.6E-05 2.1E-09 70.5 11.4 73 538-610 2-100 (165)
485 PF05729 NACHT: NACHT domain 97.9 6.3E-05 1.4E-09 72.2 9.3 139 537-680 2-161 (166)
486 PRK07132 DNA polymerase III su 97.9 0.00031 6.7E-09 74.2 15.2 130 256-411 19-160 (299)
487 PF00931 NB-ARC: NB-ARC domain 97.9 0.00016 3.5E-09 76.4 13.2 131 533-681 17-169 (287)
488 cd01120 RecA-like_NTPases RecA 97.9 4E-05 8.7E-10 73.2 7.7 23 258-280 2-24 (165)
489 TIGR02237 recomb_radB DNA repa 97.8 9.7E-05 2.1E-09 74.3 9.2 41 251-291 8-50 (209)
490 COG3284 AcoR Transcriptional a 97.8 7.4E-05 1.6E-09 83.8 8.9 192 223-454 316-540 (606)
491 PF03969 AFG1_ATPase: AFG1-lik 97.8 3.6E-05 7.8E-10 83.4 6.3 111 531-654 58-175 (362)
492 PF13191 AAA_16: AAA ATPase do 97.7 9E-05 2E-09 72.7 8.2 48 222-280 2-49 (185)
493 TIGR01618 phage_P_loop phage n 97.7 0.00011 2.3E-09 73.9 8.7 22 255-276 12-33 (220)
494 PHA00729 NTP-binding motif con 97.7 0.00012 2.5E-09 73.5 8.4 24 256-279 18-41 (226)
495 KOG2543 Origin recognition com 97.7 0.0012 2.6E-08 69.8 16.0 176 529-714 24-233 (438)
496 TIGR01618 phage_P_loop phage n 97.7 0.00017 3.7E-09 72.5 9.5 110 535-646 12-143 (220)
497 COG1373 Predicted ATPase (AAA+ 97.6 0.00065 1.4E-08 75.1 14.0 127 531-676 34-161 (398)
498 COG1618 Predicted nucleotide k 97.6 0.00029 6.4E-09 65.6 9.3 26 534-559 4-29 (179)
499 PRK07276 DNA polymerase III su 97.6 0.00076 1.6E-08 70.7 13.6 132 254-410 23-172 (290)
500 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0023 5E-08 70.6 17.3 61 214-285 78-139 (634)
No 1
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-131 Score=1033.56 Aligned_cols=700 Identities=56% Similarity=0.880 Sum_probs=652.4
Q ss_pred CCCceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCeEEEEEEeeCCCCCCCcEeecHHHHhccCccC
Q 004550 9 SSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLITSHPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 9 ~~~~~~l~V~~~p~~~~~~~N~v~vs~~d~~~l~~~g~~~~~v~i~~~~~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
+++.+.++|.+||++++++|||+||||.||.+. .+..+...+|+| +...+.++++|.|++|.+||+|+++++
T Consensus 5 ~~~~~~~~v~k~ps~e~altn~a~v~~~DF~~~-------~~~~vd~~~~~F-s~~~~~~i~~g~i~fs~~qR~wa~~Sl 76 (744)
T KOG0741|consen 5 VSNIKAFQVTKCPSNELALTNCAYVSPSDFRQF-------QVIIVDNFHYVF-STEFTPSIPPGNIGFSLPQRKWAGWSL 76 (744)
T ss_pred cccceeeeeecCCchhhhccCcceeCccccccc-------eeeEEeeeeEEE-EeeccCCCCCceeccchhhhhhhhccc
Confidence 345778999999999999999999999999753 355552226999 999999999999999999999999999
Q ss_pred CCeEEEEEeCCC-CcceeeeEEEEeeeeecCC-ccccccHHHHHHHHHHHhcCCccccCcEEEEEEcC-eEEEEEEEEee
Q 004550 89 GDHVSLNRFIPP-EDFNLALLTVELEFVKKGS-KNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHG-NNYIFTVNGAA 165 (745)
Q Consensus 89 ~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~ 165 (745)
||.|.|+||.++ +..+++.+++++||.++++ +..++|.++++..|+.+|.+|++++||.+.|+|.+ ..+.++|++++
T Consensus 77 ~qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie 156 (744)
T KOG0741|consen 77 GQEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIE 156 (744)
T ss_pred CceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEe
Confidence 999999999876 4589999999999998885 67889999999999999999999999999999998 45688888876
Q ss_pred ec------Ccc---cccccccceecCCcEEEEEecCCCceeeeccc--cCccccccccCCCcccccCccccHHHHHHHHH
Q 004550 166 VE------GQE---KSNALERGIITNETYFVFEASNDSGIKIVNQR--EGANSNIFRHKEFNLQSLGIGGLSAEFADIFR 234 (745)
Q Consensus 166 ~~------~~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~ 234 (745)
.- ++. ......+|+++++|.|.|.+...+.+++.++. ++....+++ |+|+|+++|||||++++..|||
T Consensus 157 ~~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~-Pdf~Fe~mGIGGLd~EFs~IFR 235 (744)
T KOG0741|consen 157 AFDPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIIN-PDFNFESMGIGGLDKEFSDIFR 235 (744)
T ss_pred eeccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccC-CCCChhhcccccchHHHHHHHH
Confidence 51 111 11346689999999999999999999998874 233444455 9999999999999999999999
Q ss_pred HHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhh
Q 004550 235 RAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND 314 (745)
Q Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~ 314 (745)
+||.++++||++.+++|++|.||||||||||||||++||+|+++|+++++++|||++++++|+|++|+++|++|..|++.
T Consensus 236 RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 236 RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccce
Q 004550 315 QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 394 (745)
Q Consensus 315 ~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~ 394 (745)
++..|..+..|||++||||++|++|++..+++++++.++||||+.|||+++.+|++|||+|||.+.||+||+|||||+.+
T Consensus 316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVq 395 (744)
T KOG0741|consen 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQ 395 (744)
T ss_pred HHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcccc--CCCCCCcccC
Q 004550 395 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMD--DLTKPVDEES 472 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~--~~~~~~~~~~ 472 (745)
++|.+||++.|.+||++|+++|.++..+.+++|+.+||..|.+||||+|+.+++.|.++|++|++... ........++
T Consensus 396 mEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~ 475 (744)
T KOG0741|consen 396 MEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIEN 475 (744)
T ss_pred EEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998766 3334556788
Q ss_pred ceeehhhHHHHHHhhhccccccccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHH
Q 004550 473 IKVTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALA 552 (745)
Q Consensus 473 ~~it~~df~~al~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la 552 (745)
++|+++||..|+++++|+||.+++++.....+|++.|+..+.++++..+.++++++.+.+.+..++||.||||+|||++|
T Consensus 476 lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 476 LKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred eeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC
Q 004550 553 ATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL 632 (745)
Q Consensus 553 ~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~ 632 (745)
..+|..+++|||++.+|+.++|.+|.+++.+++++|++||+++.+||++|+||+|++|+++||||||.++|+|+.++++.
T Consensus 556 A~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ 635 (744)
T KOG0741|consen 556 AKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQ 635 (744)
T ss_pred HHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC-HHHHHHHHHHccCCCHHHHHHHHHHCC----CCcHHHHHHH
Q 004550 633 PPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK-TDDAKKVLKQLNVFAEEDVDSASEALN----DMPIKKLYML 707 (745)
Q Consensus 633 ~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~~~~~~~d~~~~~~~~~----~~~ir~ll~~ 707 (745)
|+++++++|+|||++.+.|..+++..+|+..+++|.++ .+++.+++++.+.|++++...+..... ..+|++++++
T Consensus 636 ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~~~vgIKklL~l 715 (744)
T KOG0741|consen 636 PPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKKVNVGIKKLLML 715 (744)
T ss_pred CCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999 599999999999999988766655443 7789999999
Q ss_pred HHHHHccccC
Q 004550 708 IEMAAQGEQG 717 (745)
Q Consensus 708 l~~a~~~~~~ 717 (745)
+++|++..+.
T Consensus 716 ie~a~q~e~~ 725 (744)
T KOG0741|consen 716 IEMARQDEQE 725 (744)
T ss_pred HHHHhccCcc
Confidence 9999998754
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-88 Score=716.86 Aligned_cols=510 Identities=26% Similarity=0.393 Sum_probs=441.5
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
+++.|++ |||+++.+.++ .+++.. +.+|+.|.++|+.||+|+|||||||||||+||+++|.++ +.+++.++++++
T Consensus 185 snv~f~d--iGG~d~~~~el-~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApei 259 (802)
T KOG0733|consen 185 SNVSFSD--IGGLDKTLAEL-CELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEI 259 (802)
T ss_pred CCcchhh--ccChHHHHHHH-HHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhh
Confidence 5789999 99999999999 677766 899999999999999999999999999999999999999 789999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCC----Cc
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL----NN 368 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~----~~ 368 (745)
++.+.|++|+++|++|++|.... |||+||||||++.++|...+ .+..++++.|||+.||++... ..
T Consensus 260 vSGvSGESEkkiRelF~~A~~~a--------PcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNA--------PCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccC--------CeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCC
Confidence 99999999999999999999874 88999999999999998743 478899999999999998655 57
Q ss_pred EEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 004550 369 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 448 (745)
Q Consensus 369 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 448 (745)
|+|||+||||+.|||+|+|+|||+++|.+..|++.+|.+||+..++++. +..+.++.+||..|.||+|+||.+||.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr----l~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR----LSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC----CCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 778999999999999999999999999
Q ss_pred HHHHHHHHhhccccCC-----C-------C-----C--------------------------------CcccCceeehhh
Q 004550 449 SAVSFALNRQLSMDDL-----T-------K-----P--------------------------------VDEESIKVTMDD 479 (745)
Q Consensus 449 ~A~~~a~~r~~~~~~~-----~-------~-----~--------------------------------~~~~~~~it~~d 479 (745)
+|+..|++|.++.... . + . ...+.+.|+.+|
T Consensus 406 ~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eD 485 (802)
T KOG0733|consen 406 EAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFED 485 (802)
T ss_pred HHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHH
Confidence 9999999998652220 0 0 0 001235688999
Q ss_pred HHHHHHhhhcccccc----ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHH
Q 004550 480 FLHALYEIVPAFGAS----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATA 555 (745)
Q Consensus 480 f~~al~~~~ps~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~l 555 (745)
|..|+..++|++... .+++.|..++++..+..++...+.+..++.+.++..+...|.++|||||||||||.+||++
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 999999999998654 5788999999999988888888999999999999999999999999999999999999999
Q ss_pred HhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC-CcchHHHHHHHHHHHhcCCC
Q 004550 556 GIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQTMLVLLKRLPP 634 (745)
Q Consensus 556 A~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g-~~~~~~~~~~Ll~~l~~~~~ 634 (745)
|++++.+|+.+++|+ ++.+|.|+++.++|.+|.+|+.+.||||||||+|+|.+.|+.+ ...+.++.++||++|+++ +
T Consensus 566 ANEag~NFisVKGPE-LlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~ 643 (802)
T KOG0733|consen 566 ANEAGANFISVKGPE-LLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-E 643 (802)
T ss_pred hhhccCceEeecCHH-HHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-c
Confidence 999999999999999 5567888888899999999999999999999999999988654 456789999999999998 4
Q ss_pred CCCcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc------CCCHHHHHHHHHHCC--CCcHHHHH
Q 004550 635 KGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN------VFAEEDVDSASEALN--DMPIKKLY 705 (745)
Q Consensus 635 ~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~------~~~~~d~~~~~~~~~--~~~ir~ll 705 (745)
.++.|.|||+||+||.+|++.|| +|||..+++++|+.+|+.+||+... .-++-++.++..... +++..+|.
T Consensus 644 ~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 644 ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 56799999999999999999999 9999999999999999999999642 234456666665554 66777777
Q ss_pred HHHHHHHccccCCchhhc---------ccCCCCccHhHHHHHHHHHh
Q 004550 706 MLIEMAAQGEQGGAAEAI---------YSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 706 ~~l~~a~~~~~~~~~~~~---------~~~~~~I~~~~~~~al~~~~ 743 (745)
.+++.|...+-.....+. ......++..||++|++.+.
T Consensus 724 aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 776666443321111111 11123478889999998653
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-81 Score=674.79 Aligned_cols=632 Identities=26% Similarity=0.367 Sum_probs=514.2
Q ss_pred EEEeChhhhcccCCC-CCCceEEEEeCC---eEEEEEEeeCCCCCCCcEeecHHHHhccCccCCCeEEEEEeCCCCccee
Q 004550 30 LAYCSPADLLNFRVP-NSNLFLASVAGD---SFVLSLITSHPSVNKGQIALNSVQRRHAKVSTGDHVSLNRFIPPEDFNL 105 (745)
Q Consensus 30 ~v~vs~~d~~~l~~~-g~~~~~v~i~~~---~~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~~~~~~~~~~~~~ 105 (745)
.+.+++..+..+... | +.+.|. ..+. ....++. ....+.++...|.++.++.|+.|.+.+ .|+-.+..
T Consensus 29 ~~~~~~~~~~~~~l~~g-----~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~~~~~~~~~~-~p~v~~~~ 100 (693)
T KOG0730|consen 29 VVVLSEGAMDKLGLLRG-----VLLDGKKRREPVD-AVVQDET-SELIGRQTMVSRSNLRLQLGRLLHSSD-CPSVKRPA 100 (693)
T ss_pred hheecHHHHhhhcCCcc-----eEEECccccCCcc-ceeccCC-ccccchhhheeccchhhcccceecccC-CCCccccc
Confidence 778888887766552 4 333222 2344 3333444 778889999999999999999999988 33311111
Q ss_pred eeEEEEeeeeecCCccccccHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCcccccccccceecCCcE
Q 004550 106 ALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETY 185 (745)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~ 185 (745)
..-.+.++....+.....+| .....++...+.+ +..|+.. .....+.+++....+ .. ++.++|.
T Consensus 101 ~i~~l~~~~~~~~i~~~~~d-~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~--------~~--~v~~~t~ 164 (693)
T KOG0730|consen 101 RIAVLPVDDTSEGIAGELFD-VLERPFLLEALRP--LVKGDTF---AGLNPAEFKVLELDP--------SP--QVTPDTE 164 (693)
T ss_pred eeeeeehhhccccchhhhhh-hhhhhhhhhhhCc--cccccch---hhhhhhhhhcccccc--------ch--hcCccch
Confidence 11122223222221212222 1122223333333 5555533 112233455555443 11 6777777
Q ss_pred EEEEecCCCceeeeccccCccccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCC
Q 004550 186 FVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPG 265 (745)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppG 265 (745)
+.+....... .. .. .+.+. ++ +||+..+++.+ ++++.+|+.+|..+...|+++|+|+|+|||||
T Consensus 165 ~~~~~~~~~~---~~-----~~----~~~~~-~~--~gg~~~~~~~i-~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg 228 (693)
T KOG0730|consen 165 LSYLGEPAKR---EE-----EE----LPEVG-DD--IGGLKRQLSVI-RELVELPLRHPALFKSIGIKPPRGLLLYGPPG 228 (693)
T ss_pred hhhcCCCccc---cc-----cc----ccccc-cc--cchhHHHHHHH-HHHHHhhhcchhhhhhcCCCCCCCccccCCCC
Confidence 7766543221 10 00 13455 55 99999999999 99999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCC
Q 004550 266 TGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG 345 (745)
Q Consensus 266 tGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~ 345 (745)
||||.+++++|++. +..++.+++++++++|.|++++++|..|+.|...+ .|.||||||+|++++++....+
T Consensus 229 ~Gkt~l~~aVa~e~-~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~-------~psii~IdEld~l~p~r~~~~~- 299 (693)
T KOG0730|consen 229 TGKTFLVRAVANEY-GAFLFLINGPELISKFPGETESNLRKAFAEALKFQ-------VPSIIFIDELDALCPKREGADD- 299 (693)
T ss_pred CChHHHHHHHHHHh-CceeEecccHHHHHhcccchHHHHHHHHHHHhccC-------CCeeEeHHhHhhhCCcccccch-
Confidence 99999999999998 57788899999999999999999999999999886 2669999999999999977643
Q ss_pred CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCc
Q 004550 346 TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPD 425 (745)
Q Consensus 346 ~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~ 425 (745)
+.++++.+|++.||+.....+++||++||+|+.|||+++| |||++.++|..|+..+|.+|++.++++|+ ..++
T Consensus 300 --~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~----~~~~ 372 (693)
T KOG0730|consen 300 --VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN----LLSD 372 (693)
T ss_pred --HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC----Ccch
Confidence 6889999999999999999999999999999999999999 99999999999999999999999999998 5578
Q ss_pred ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcccc----ccccccccc
Q 004550 426 VNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG----ASTDDLERS 501 (745)
Q Consensus 426 ~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~----~~~~~~~~~ 501 (745)
+++..+|..++||+|+||.++|++|...+.++ ++++|..|+..++|+.. .+.+++.|.
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~ 434 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR------------------TLEIFQEALMGIRPSALREILVEMPNVSWD 434 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------------hHHHHHHHHhcCCchhhhheeccCCCCChh
Confidence 99999999999999999999999999999875 78899999999999864 356789999
Q ss_pred cccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHH
Q 004550 502 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKC 581 (745)
Q Consensus 502 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~ 581 (745)
.++|+..++..+++.+.|..++.+.+.+.+.+||++||||||||||||++||++|++++++|+++++|+. +.+|.++++
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL-~sk~vGeSE 513 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL-FSKYVGESE 513 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH-HHHhcCchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994 567777888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhcCC-CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccc-cc
Q 004550 582 AQIVKVFEDAYKSPLSIIILDDIERLLEYVP-IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DA 659 (745)
Q Consensus 582 ~~i~~~f~~a~~~~~~il~lDEid~l~~~~~-~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~-~r 659 (745)
..++++|++|++.+||||||||||++...|+ .+...+++++++||++|+++. ..++|+|||+||+|+.+|++.++ +|
T Consensus 514 r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 514 RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-ccCcEEEEeccCChhhcCHHHcCCcc
Confidence 8999999999999999999999999998884 333568999999999999994 45799999999999999999998 99
Q ss_pred cceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHH
Q 004550 660 FSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 735 (745)
Q Consensus 660 f~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~ 735 (745)
||+.|+||+|+.+.+.+||+.. ..-.+-|+.+++..+.+.+.+++..+++.|+..+-.... +...|+.+||
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i-----~a~~i~~~hf 667 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESI-----EATEITWQHF 667 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-----ccccccHHHH
Confidence 9999999999999999999974 233345889999999999999999999999887643211 2467999999
Q ss_pred HHHHHHH
Q 004550 736 YDCLQDM 742 (745)
Q Consensus 736 ~~al~~~ 742 (745)
.+|+..+
T Consensus 668 ~~al~~~ 674 (693)
T KOG0730|consen 668 EEALKAV 674 (693)
T ss_pred HHHHHhh
Confidence 9999854
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.3e-73 Score=671.89 Aligned_cols=675 Identities=25% Similarity=0.376 Sum_probs=545.1
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCCC-CCCceEEEEe-CC-eEEEEEEee--CCCCCCCcEeecHHHHhccCccC
Q 004550 14 TMNVINTPSADLALTNLAYCSPADLLNFRVP-NSNLFLASVA-GD-SFVLSLITS--HPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 14 ~l~V~~~p~~~~~~~N~v~vs~~d~~~l~~~-g~~~~~v~i~-~~-~~v~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
.++|.... +.....+.++++|+.+.+|+.. | .+|.+. |+ ..+. .+++ .++.+++.|.+|+.+|.|+|+++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (733)
T TIGR01243 3 ELRVAEAY-PRDVGRGIVRIDRQTAARLGVEPG---DFVEIEKGDRSVVA-IVWPLRPDDEGRGIIRMDGYLRANAGVTI 77 (733)
T ss_pred EEEehhhh-ccCCCCCeEeeCHHHHHhcCCCCC---CEEEEecCCCceeE-EEEecCccccCCCEEeecHHHHhhcCCCC
Confidence 46777764 3445899999999999999884 6 577775 33 3555 7776 45678899999999999999999
Q ss_pred CCeEEEEEeCCCCcceeeeEEEEeeeeecCCccccccHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecC
Q 004550 89 GDHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEG 168 (745)
Q Consensus 89 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 168 (745)
||.|+|+++..+. +..+++.- .... .....+..+++..+.++++..|+.+.+.+.+..+.|+|+++.|
T Consensus 78 ~~~~~~~~~~~~~---~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p-- 145 (733)
T TIGR01243 78 GDTVTVERAEVKE---AKKVVLAP------TQPI-RFGRDFVDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQP-- 145 (733)
T ss_pred CCeEEEeecCCCc---cceEeecc------cccc-ccccchHHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCC--
Confidence 9999999987442 22233211 0000 1123456788899999999999999988877778889988877
Q ss_pred cccccccccceecCCcEEEEEecCCCceeeeccccCccccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHh
Q 004550 169 QEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTS 248 (745)
Q Consensus 169 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~ 248 (745)
...+.++..|.+.+........ . ....++++|++ |||++++++++ ++++..++.+|++++
T Consensus 146 ------~~~~~~~~~t~~~~~~~~~~~~------~-----~~~~~~~~~~d--i~G~~~~~~~l-~~~i~~~~~~~~~~~ 205 (733)
T TIGR01243 146 ------AGFVYVTEATEVEIREKPVREE------I-----ERKVPKVTYED--IGGLKEAKEKI-REMVELPMKHPELFE 205 (733)
T ss_pred ------CCcEEECCCceEEecCCccccc------c-----ccCCCCCCHHH--hcCHHHHHHHH-HHHHHHHhhCHHHHH
Confidence 3466778888887754322110 0 00126899999 99999999999 999999999999999
Q ss_pred hhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEE
Q 004550 249 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVII 328 (745)
Q Consensus 249 ~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~ 328 (745)
++|+.+++|+|||||||||||++|+++|+++ +.+++.++++++.++|.|+++..++.+|+.+.... |+|||
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~-~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~--------p~il~ 276 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-GAYFISINGPEIMSKYYGESEERLREIFKEAEENA--------PSIIF 276 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC--------CcEEE
Confidence 9999999999999999999999999999998 46678899999999999999999999999998764 67999
Q ss_pred EccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHH
Q 004550 329 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 408 (745)
Q Consensus 329 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~I 408 (745)
|||+|.++++++...+ +...+++++|+..|+++.....++||++||+++.+|++++|+|||+..++++.|+.++|.+|
T Consensus 277 iDEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 277 IDEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred eehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 9999999988764332 45678999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCC---C---CcccCceeehhhHHH
Q 004550 409 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTK---P---VDEESIKVTMDDFLH 482 (745)
Q Consensus 409 l~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~---~---~~~~~~~it~~df~~ 482 (745)
|+.+++.+. +..+.++..++..++||+++|+..+|+.|.+.+++|......... . .......++.+||..
T Consensus 355 l~~~~~~~~----l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~ 430 (733)
T TIGR01243 355 LKVHTRNMP----LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFME 430 (733)
T ss_pred HHHHhcCCC----CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHH
Confidence 999988776 567888999999999999999999999999999998765322110 0 112456789999999
Q ss_pred HHHhhhccccc----cccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhh
Q 004550 483 ALYEIVPAFGA----STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID 558 (745)
Q Consensus 483 al~~~~ps~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~ 558 (745)
++..++|+... ..+.+.|..+.|+...+..+.+.+.+...+.+.+...+..++.++|||||||||||++|+++|.+
T Consensus 431 Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 431 ALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred HHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 99999998643 23456777777777777777777777777778888888899999999999999999999999999
Q ss_pred CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC--CcchHHHHHHHHHHHhcCCCCC
Q 004550 559 SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG--PRFSNIISQTMLVLLKRLPPKG 636 (745)
Q Consensus 559 ~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g--~~~~~~~~~~Ll~~l~~~~~~~ 636 (745)
++.+|+.+.+++ +.+.+.+++++.++++|+.|++..||||||||||+|++.++.+ ....+++...|+..|+++.. .
T Consensus 511 ~~~~fi~v~~~~-l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~-~ 588 (733)
T TIGR01243 511 SGANFIAVRGPE-ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE-L 588 (733)
T ss_pred cCCCEEEEehHH-HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-C
Confidence 999999998877 5556667777899999999999999999999999999876432 23456788888899988743 4
Q ss_pred CcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHH
Q 004550 637 KKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMA 711 (745)
Q Consensus 637 ~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a 711 (745)
.+++||||||+++.+|++.+| +||+..++||+|+.+++.+||+.. ....+.++..++..+.+.+.+++..+++.|
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A 668 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREA 668 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 589999999999999999988 899999999999999999999863 223345677788777788888888888777
Q ss_pred HccccCCch-----hhc------ccCCCCccHhHHHHHHHHH
Q 004550 712 AQGEQGGAA-----EAI------YSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 712 ~~~~~~~~~-----~~~------~~~~~~I~~~~~~~al~~~ 742 (745)
+..+-.+.. +.. ......|+.+||.+|++.+
T Consensus 669 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 669 AMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 664422100 000 0112479999999999865
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-58 Score=504.22 Aligned_cols=573 Identities=21% Similarity=0.271 Sum_probs=422.4
Q ss_pred HHHHHHHHhc-CCccccCcEEEEEEcCe------------------EEEEEEEEeeecCcccccccccceecCCcEEEEE
Q 004550 129 LANQLRKRFI-NQVMTAGQRVVFEYHGN------------------NYIFTVNGAAVEGQEKSNALERGIITNETYFVFE 189 (745)
Q Consensus 129 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 189 (745)
+...++++|. .++++.|+.+++.++.. .+.++|.+++|. .....-+-+..|.++..
T Consensus 306 ~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~-----~~~~~~i~~~~T~lv~~ 380 (953)
T KOG0736|consen 306 IDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPG-----NESAYIIDTNHTSLVLV 380 (953)
T ss_pred HHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCC-----ccceEEEcCCCceEEEc
Confidence 3334444443 48999999999987543 246677777661 11112233456777766
Q ss_pred ecCCCceeeeccccCccccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHH
Q 004550 190 ASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKT 269 (745)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT 269 (745)
....+.+...+.+. . .-++|-. .-+++..+.++ .++.+|-..|. ..++.-...+||+|+||||||
T Consensus 381 ~~~ss~~~~lps~~----~----~l~n~~~--~~~~~~~~~~l--~~vl~p~~~~s---~~~~~~~~~vLLhG~~g~GK~ 445 (953)
T KOG0736|consen 381 GATSSRVPLLPSSL----S----TLWNSLS--PPGLEAKVLEL--VAVLSPQKQPS---GALLTLNPSVLLHGPPGSGKT 445 (953)
T ss_pred cccccCCcCCChhh----H----HHhccCC--CccchHHHHHH--HHHhCcccCcc---hhccccceEEEEeCCCCCChH
Confidence 55544332222211 0 1122222 45555555544 34445544442 334455667999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcch
Q 004550 270 LMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVH 349 (745)
Q Consensus 270 ~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 349 (745)
++++++|+++ +.+++.++|.++.....+.++.++...|..|+... |+|||+-++|.+..+.+. +..
T Consensus 446 t~V~~vas~l-g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~--------pavifl~~~dvl~id~dg-----ged 511 (953)
T KOG0736|consen 446 TVVRAVASEL-GLHLLEVDCYELVAESASHTETKLQAIFSRARRCS--------PAVLFLRNLDVLGIDQDG-----GED 511 (953)
T ss_pred HHHHHHHHHh-CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC--------ceEEEEeccceeeecCCC-----chh
Confidence 9999999999 78899999999999999999999999999999875 679999999999844433 222
Q ss_pred hHH---HHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcc
Q 004550 350 DSI---VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDV 426 (745)
Q Consensus 350 ~~~---~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~ 426 (745)
.++ ++.++..=+.......++||++|+..+.+++.+++ -|..+|.++.|++++|.+||+.++.... +..++
T Consensus 512 ~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~----~n~~v 585 (953)
T KOG0736|consen 512 ARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP----LNQDV 585 (953)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc----cchHH
Confidence 333 33444421233456789999999999999999999 7778899999999999999999988776 77889
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccC-------CCCCCcccCceeehhhHHHHHHhhhccccc-----c
Q 004550 427 NLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDD-------LTKPVDEESIKVTMDDFLHALYEIVPAFGA-----S 494 (745)
Q Consensus 427 ~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~-------~~~~~~~~~~~it~~df~~al~~~~ps~~~-----~ 494 (745)
.+..++.+|.||+.++++.++..+...+..|.....- ...........++++||.+++...+..+.. .
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 9999999999999999999988875545444332220 011222344789999999999977665432 3
Q ss_pred ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccc
Q 004550 495 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIG 574 (745)
Q Consensus 495 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g 574 (745)
.+.+.|.+.+|+.+.+..+.+.++.+.++++.+ ..+.++..++|||||||||||.+|||+|.++.++|+++++|| ++.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE-LLN 743 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE-LLN 743 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH-HHH
Confidence 678899999999998887777777777776655 445666789999999999999999999999999999999999 566
Q ss_pred cchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCC---CCcchHHHHHHHHHHHhcCCC-CCCcEEEEEecCCCCC
Q 004550 575 LHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI---GPRFSNIISQTMLVLLKRLPP-KGKKLLVIGTTSEVSF 650 (745)
Q Consensus 575 ~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~---g~~~~~~~~~~Ll~~l~~~~~-~~~~v~vI~ttn~~~~ 650 (745)
+|.|++++++|++|++|+.+.||||||||+|+|++.|+. .+.+++++.+.|+.+||++.. ....|+||||||+||.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 888888899999999999999999999999999998853 235788999999999999975 6779999999999999
Q ss_pred CCccccc-cccceEEEcCCCC-HHHHHHHHHHc----cCCCHHHHHHHHHHCC-CCcHHHHHHHHHHHHccccCCchhhc
Q 004550 651 LDSVGIC-DAFSVTYHVPTLK-TDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAI 723 (745)
Q Consensus 651 l~~~~l~-~rf~~~i~~p~~~-~~~~~~Il~~~----~~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a~~~~~~~~~~~~ 723 (745)
+|++.|| ||||..+++.+.. .+...+||+.. ..-.+-|+.+++.... ..+..++..++.-|-..|-.+...+.
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999998887 66667777753 2333445666666655 55556665555444333221111111
Q ss_pred ----------ccCCCCccHhHHHHHHHHHh
Q 004550 724 ----------YSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 724 ----------~~~~~~I~~~~~~~al~~~~ 743 (745)
.+..-.|+++||.++++.+.
T Consensus 904 e~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 904 ESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred hhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 22334689999999998654
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-58 Score=467.07 Aligned_cols=286 Identities=36% Similarity=0.586 Sum_probs=256.2
Q ss_pred cccceecCCcEEEEEecCCCceeeeccccCcc---ccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhC
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQREGAN---SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 251 (745)
.+...+.+..+|.+.....+.+.+.+.+..+. -.+.+.|+++|++ ||||++|+++| ++++++|+.+|++|+++|
T Consensus 105 vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~d--IGGL~~Qi~Ei-rE~VELPL~~PElF~~~G 181 (406)
T COG1222 105 VDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYED--IGGLDEQIQEI-REVVELPLKNPELFEELG 181 (406)
T ss_pred cCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhh--ccCHHHHHHHH-HHHhcccccCHHHHHHcC
Confidence 45667788888888877777777776553222 2334569999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
+.||+|||||||||||||+||||+|+..+ ..|+.+.+++++.+|.|+..+.+|++|..|+.+. ||||||||
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~-AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka--------PsIIFiDE 252 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTD-ATFIRVVGSELVQKYIGEGARLVRELFELAREKA--------PSIIFIDE 252 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC-ceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC--------CeEEEEec
Confidence 99999999999999999999999999985 5567789999999999999999999999999885 67999999
Q ss_pred chhhhhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHH
Q 004550 332 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
||++..+|.....+ ....++.+-+||++|||++..+++-||++||+++.|||||+||||||+.|+||+||.++|.+||+
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 99999988765432 22456677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
+|+++|. +.+++|++.||..++|+|||||.++|.+|.++|++. ....+|++||.+|.+++..
T Consensus 333 IHtrkM~----l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~-------------~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 333 IHTRKMN----LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE-------------RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHhhhcc----CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh-------------ccCeecHHHHHHHHHHHHh
Confidence 9999999 889999999999999999999999999999999984 4568999999999998743
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-52 Score=470.91 Aligned_cols=471 Identities=34% Similarity=0.472 Sum_probs=417.3
Q ss_pred ccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhcccc
Q 004550 239 SRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTR 318 (745)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~ 318 (745)
.++.+|+.++.+++.++++++++||||||||+++++++.. .... ..++++++.++|.|+++.+++.+|..+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-- 77 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRLRELFEEAEKLAP-- 77 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc-cccCcchhhhhhhhHHHHHHHHHHHHHHHhCC--
Confidence 4677899999999999999999999999999999999998 5555 88999999999999999999999999998864
Q ss_pred CCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEec
Q 004550 319 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS 398 (745)
Q Consensus 319 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~ 398 (745)
+++++||+|.+++.+.. ......+.++.+++..++++. ...+++++.||++..++++++++|||+.++.++
T Consensus 78 ------~ii~~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (494)
T COG0464 78 ------SIIFIDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVN 148 (494)
T ss_pred ------CeEeechhhhcccCccc--cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecC
Confidence 59999999999999877 334678899999999999999 455999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehh
Q 004550 399 LPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMD 478 (745)
Q Consensus 399 ~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~ 478 (745)
.|+...+.+|++.+...+. ...+.++..++..+.||+++++..+++.+...+..|.. ........++.+
T Consensus 149 ~~~~~~~~ei~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-------~~~~~~~~~~~~ 217 (494)
T COG0464 149 LPDEAGRLEILQIHTRLMF----LGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-------DLVGEYIGVTED 217 (494)
T ss_pred CCCHHHHHHHHHHHHhcCC----CcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-------ccCcccccccHH
Confidence 9999999999999998887 45578899999999999999999999999999998864 122456679999
Q ss_pred hHHHHHHhhhcc--ccccccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHH
Q 004550 479 DFLHALYEIVPA--FGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAG 556 (745)
Q Consensus 479 df~~al~~~~ps--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA 556 (745)
||..++..+.|+ .....+.+.|....|+...+..+.+.+.++..+.+.+...+..++.++|||||||||||++|+++|
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 999999999885 445677888999999999988899999999999998888788999999999999999999999999
Q ss_pred hhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcch-HHHHHHHHHHHhcCCCC
Q 004550 557 IDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFS-NIISQTMLVLLKRLPPK 635 (745)
Q Consensus 557 ~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~-~~~~~~Ll~~l~~~~~~ 635 (745)
.+++.+|+.+..+ .+++.+.++++++++++|..|++..||||||||+|+++.+++.+...+ .++.+.|+..|+++. .
T Consensus 298 ~~~~~~fi~v~~~-~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-~ 375 (494)
T COG0464 298 LESRSRFISVKGS-ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-K 375 (494)
T ss_pred hhCCCeEEEeeCH-HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-c
Confidence 9999999999999 688999999999999999999999999999999999999887665544 489999999999884 4
Q ss_pred CCcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHccC------CCHHHHHHHHHHCCCCcHHHHHHHH
Q 004550 636 GKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLNV------FAEEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 636 ~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~~------~~~~d~~~~~~~~~~~~ir~ll~~l 708 (745)
...|+||||||+++.+|++.+| +||+..++||+|+.+++.+|++.... ..+.++..+.....+....++..++
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 5579999999999999999887 89999999999999999999997422 2356677777767788999999999
Q ss_pred HHHHccccCCchhhcccC-CCCccHhHHHHHHHHH
Q 004550 709 EMAAQGEQGGAAEAIYSG-REKIKISHFYDCLQDM 742 (745)
Q Consensus 709 ~~a~~~~~~~~~~~~~~~-~~~I~~~~~~~al~~~ 742 (745)
+.|...+.. +. ...|+.+||.+|+..+
T Consensus 456 ~ea~~~~~~-------~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 456 REAALEALR-------EARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHHH-------HhccCCccHHHHHHHHHhc
Confidence 998887643 22 4579999999999864
No 8
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-51 Score=443.15 Aligned_cols=434 Identities=17% Similarity=0.235 Sum_probs=355.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCC---CcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEE
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGM---EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 329 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~---~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~i 329 (745)
..+.+|||+||+|||||.|++++++++... ++..++|+.+-.+......+.++.+|..+...+ |+||++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~--------PSiIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA--------PSIIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC--------CcEEEE
Confidence 345689999999999999999999998532 345689998887777777788899999999886 559999
Q ss_pred ccchhhhhcCCCCCCCCcchhHHHHHHHHh-ccCc-cCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHH
Q 004550 330 DEIDAICKSRGSTRDGTGVHDSIVNQLLTK-IDGV-ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQ 407 (745)
Q Consensus 330 DEid~l~~~~~~~~~~~~~~~~~~~~LL~~-~d~~-~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~ 407 (745)
|++|.|+...+...+..++....+..+++. ++.+ ..+..+.|||+.+....++|.|.+|++|..++.+|.|+..+|.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 999999873333222223334444444433 2222 33345799999999999999999999999999999999999999
Q ss_pred HHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 408 ILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 408 Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
||+..+++... .....|++-++..|+||...|++.++++|...|+...+. ..+. .+|.++|.++++..
T Consensus 581 IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris--------~~~k-lltke~f~ksL~~F 648 (952)
T KOG0735|consen 581 ILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS--------NGPK-LLTKELFEKSLKDF 648 (952)
T ss_pred HHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc--------cCcc-cchHHHHHHHHHhc
Confidence 99988765431 112335666999999999999999999999999843222 1222 78999999999999
Q ss_pred hcccccc-----ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC
Q 004550 488 VPAFGAS-----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP 562 (745)
Q Consensus 488 ~ps~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~ 562 (745)
.|....+ ...+.|.+++|+.+.++.+.++++|+.++..-+...+.+.+.++|||||||||||.+|.++|..++++
T Consensus 649 ~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 649 VPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred ChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 8886543 34578888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC-CcchHHHHHHHHHHHhcCCCCCCcEEE
Q 004550 563 FVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQTMLVLLKRLPPKGKKLLV 641 (745)
Q Consensus 563 ~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g-~~~~~~~~~~Ll~~l~~~~~~~~~v~v 641 (745)
||.+++|| +..+|.|.+++++|.+|.+|+...|||+||||+|++++.|+-+ .++.+++.+.|++.|++.+ ....|.|
T Consensus 729 fisvKGPE-lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E-gl~GV~i 806 (952)
T KOG0735|consen 729 FISVKGPE-LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE-GLDGVYI 806 (952)
T ss_pred EEEecCHH-HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc-ccceEEE
Confidence 99999999 4567778888899999999999999999999999999988643 3578899999999999984 4678999
Q ss_pred EEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHH
Q 004550 642 IGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 642 I~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l 708 (745)
+|+|++||++|++.|| ||+|..++.|.|+..++.+|++.+ ....+.|+..+.....+.+..+|-.++
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 9999999999999999 999999999999999999999974 234456777777777655555554444
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-51 Score=442.66 Aligned_cols=253 Identities=42% Similarity=0.704 Sum_probs=238.9
Q ss_pred cccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEcc
Q 004550 210 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 289 (745)
Q Consensus 210 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 289 (745)
.+.|+++|+| |||+++.+.++ ++++..|+.||+.|.++|+.+|+|||||||||||||++||++|++. +.+++.+.|
T Consensus 426 ve~p~v~W~d--IGGlE~lK~el-q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkg 501 (693)
T KOG0730|consen 426 VEMPNVSWDD--IGGLEELKREL-QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKG 501 (693)
T ss_pred ccCCCCChhh--ccCHHHHHHHH-HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccC
Confidence 4568999999 99999999988 9999999999999999999999999999999999999999999997 678899999
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
++++++|+|++|+.++++|+.|+... ||||||||||+++.+|++..+ ++.++++++||++|||+....+|
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~a--------P~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVA--------PCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcC--------CeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHcccccccCcE
Confidence 99999999999999999999999875 789999999999999985433 88999999999999999999999
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
+|||+||||+.||+|++||||||+.|++|+||.+.|++||+.++++|+ +.+++|+++||..|+||||+||..+|++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp----~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP----FSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC----CCccccHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhccc
Q 004550 450 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
|+..|+++.+. ...|+.+||.+|++..+|+.
T Consensus 648 A~~~a~~e~i~-----------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 648 AALLALRESIE-----------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHhcc-----------cccccHHHHHHHHHhhcccC
Confidence 99999987653 45789999999999998875
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-50 Score=428.09 Aligned_cols=266 Identities=36% Similarity=0.584 Sum_probs=240.9
Q ss_pred ccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc
Q 004550 211 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 290 (745)
Q Consensus 211 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 290 (745)
..|+++|+| ||||++...++ ..++..|+++|++|+.+|+..|.|||||||||||||+||+++|++. +..|+.|.|+
T Consensus 504 tVPdVtW~d--IGaL~~vR~eL-~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGP 579 (802)
T KOG0733|consen 504 TVPDVTWDD--IGALEEVRLEL-NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGP 579 (802)
T ss_pred ecCCCChhh--cccHHHHHHHH-HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCH
Confidence 459999999 99999999988 9999999999999999999999999999999999999999999997 7888999999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
+++++|+|++|+.+|++|..|+..+ ||||||||+|+|+++|+... +....+++||||++|||+..+.+|+
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~sa--------PCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASA--------PCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCC--------CeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceE
Confidence 9999999999999999999999864 88999999999999998765 4678999999999999999999999
Q ss_pred EEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC--CCCHHHHHHHHH
Q 004550 371 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK--NYSGAELEGVAK 448 (745)
Q Consensus 371 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~--g~sg~dl~~l~~ 448 (745)
|||+||||+.||||++|||||+..+++++|+.++|..||+.+++. ...++..|+|++++|+.+. ||+|+||..||+
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn--~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN--TKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc--CCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999985 2334899999999999887 999999999999
Q ss_pred HHHHHHHHhhccccCCCCCC---cccCceeehhhHHHHHHhhhcccc
Q 004550 449 SAVSFALNRQLSMDDLTKPV---DEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 449 ~A~~~a~~r~~~~~~~~~~~---~~~~~~it~~df~~al~~~~ps~~ 492 (745)
+|...|+++.+...+..... ......++..||+.|+..++|+..
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCcc
Confidence 99999998876543322211 111456889999999999999863
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-48 Score=423.24 Aligned_cols=264 Identities=36% Similarity=0.631 Sum_probs=242.6
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
.|+++|+| ||||++.+.+| .+.+..|+.||++|.. |+++..|||||||||||||++|+|+|.++ ...|+.|.|++
T Consensus 666 IPnV~WdD--VGGLeevK~eI-ldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPE 740 (953)
T KOG0736|consen 666 IPNVSWDD--VGGLEEVKTEI-LDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPE 740 (953)
T ss_pred CCccchhc--ccCHHHHHHHH-HHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHH
Confidence 58999999 99999999999 8999999999999876 89999999999999999999999999998 46788899999
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc--CCCcE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--SLNNV 369 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~--~~~~v 369 (745)
++++|+|++|+|+|++|+.|+... |||||+||+|+++|+|+.+.++.++.|+++.|||.+|||+. ....+
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~--------PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAA--------PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccC--------CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 999999999999999999999764 89999999999999999999988999999999999999998 45689
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCC-HHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC-CCCHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPD-ENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK-NYSGAELEGVA 447 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd-~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~-g~sg~dl~~l~ 447 (745)
+|||+|||||.|||+|+||||||..+++++++ .+.+..+|+..++++. +..++++.++|+.++ .|+|||+-++|
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk----LdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK----LDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc----CCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999999999999999884 6778899999999998 889999999999985 79999999999
Q ss_pred HHHHHHHHHhhccccCCC----CCCcccCceeehhhHHHHHHhhhcccc
Q 004550 448 KSAVSFALNRQLSMDDLT----KPVDEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 448 ~~A~~~a~~r~~~~~~~~----~~~~~~~~~it~~df~~al~~~~ps~~ 492 (745)
..|.+.|++|.+...+.. +........++++||.++.++++|+.+
T Consensus 889 SdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 889 SDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 999999999987654332 234566789999999999999999863
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=360.99 Aligned_cols=284 Identities=30% Similarity=0.530 Sum_probs=252.3
Q ss_pred cccceecCCcEEEEEecCCCceeeeccccCcccccc---ccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhC
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQREGANSNIF---RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 251 (745)
.++-++.+++++.+.+..+..+.+.+.+..++-+++ +.|+++|.| |||+|-+++++ |+++++|+.+.+++++.|
T Consensus 109 idrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~d--iggld~qkqei-reavelplt~~~ly~qig 185 (408)
T KOG0727|consen 109 IDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYAD--IGGLDVQKQEI-REAVELPLTHADLYKQIG 185 (408)
T ss_pred hhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccc--cccchhhHHHH-HHHHhccchHHHHHHHhC
Confidence 357788888888888887777777654432222222 348999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
+.||+|+|||||||||||+||+++|+.. ...++.+.|++++.+|.|+..+.+|++|..|+.+. |+||||||
T Consensus 186 idpprgvllygppg~gktml~kava~~t-~a~firvvgsefvqkylgegprmvrdvfrlakena--------psiifide 256 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA--------PSIIFIDE 256 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc-chheeeeccHHHHHHHhccCcHHHHHHHHHHhccC--------CcEEEeeh
Confidence 9999999999999999999999999987 45677899999999999999999999999999886 55999999
Q ss_pred chhhhhcCCCCCCCC-cchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHH
Q 004550 332 IDAICKSRGSTRDGT-GVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~~-~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|+++.+|-..+.+. ....+++-.||+.|||++...|+-||.+||+.+.+||+|+||||+++.|+||+||..+++-+|.
T Consensus 257 idaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ 336 (408)
T KOG0727|consen 257 IDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS 336 (408)
T ss_pred hhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHH
Confidence 999999887665533 2356788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
..+.+|. +.+++|++.+..+.+..||+||.++|++|.+.|.+. ....+...||+++....
T Consensus 337 titskm~----ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~-------------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 337 TITSKMN----LSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE-------------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred hhhhccc----CCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh-------------cceeeeHHHHHHHHHhh
Confidence 9999998 889999999999999999999999999999999873 45678999999988754
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=355.35 Aligned_cols=284 Identities=34% Similarity=0.559 Sum_probs=244.4
Q ss_pred ccceecCCcEEEEEecCCCceeeeccccCccccc---cccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCC
Q 004550 176 ERGIITNETYFVFEASNDSGIKIVNQREGANSNI---FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 252 (745)
Q Consensus 176 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 252 (745)
+..-+++++.+.+.......-++.+..-.+-.++ -+.|+-+|+- ||||++|+++| ++.+++|..||++|+.+|+
T Consensus 102 ~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeM--iGgLd~QIkeI-kEVIeLPvKHPELF~aLGI 178 (404)
T KOG0728|consen 102 DISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEM--IGGLDKQIKEI-KEVIELPVKHPELFEALGI 178 (404)
T ss_pred cHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHH--hccHHHHHHHH-HHHHhccccCHHHHHhcCC
Confidence 3445677777777665444444444321111111 2458888987 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccc
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 332 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 332 (745)
..|+|+|||||||||||++||++|+.. +..++.+++++++.+|.|+..+.+|++|-.|+++. |+|||+|||
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-~c~firvsgselvqk~igegsrmvrelfvmareha--------psiifmdei 249 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA--------PSIIFMDEI 249 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC--------CceEeeecc
Confidence 999999999999999999999999997 56678899999999999999999999999999986 559999999
Q ss_pred hhhhhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 333 DAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 333 d~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
|++...|...+.+ ....++..-.||+++||+.+..++-||.+||+.+-+||||+||||+++.|+||+|+++.|.+||++
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 9999877654432 233455666789999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 412 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 412 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
|.++|. +....++..+|+...|-+|+++..+|.+|.++|++. ....+|.+||+-|...+-
T Consensus 330 hsrkmn----l~rgi~l~kiaekm~gasgaevk~vcteagm~alre-------------rrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 330 HSRKMN----LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE-------------RRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhhhc----hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-------------hhccccHHHHHHHHHHHH
Confidence 999998 778899999999999999999999999999999973 346799999999988764
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-45 Score=358.78 Aligned_cols=282 Identities=32% Similarity=0.544 Sum_probs=243.7
Q ss_pred cceecCCcEEEEEecCCCceeeeccccCcc---ccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCC
Q 004550 177 RGIITNETYFVFEASNDSGIKIVNQREGAN---SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIK 253 (745)
Q Consensus 177 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 253 (745)
.-++.+...|.+.....+.+.+...+-.+. ..+-+.|.-+|.| ||||+.|+++| ++++++|+.||++|+.+|++
T Consensus 141 KdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~d--iGGle~QiQEi-KEsvELPLthPE~YeemGik 217 (440)
T KOG0726|consen 141 KDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYAD--IGGLESQIQEI-KESVELPLTHPEYYEEMGIK 217 (440)
T ss_pred HhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcc--cccHHHHHHHH-HHhhcCCCCCHHHHHHcCCC
Confidence 445566666666666656555554332221 1223458889999 99999999999 99999999999999999999
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
||+||+|||+||||||+||+++|+..++. |+.+-+++++.+|.|+..+.+|++|..|..++ |+|+||||||
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSAT-FlRvvGseLiQkylGdGpklvRqlF~vA~e~a--------pSIvFiDEId 288 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSAT-FLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------PSIVFIDEID 288 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchh-hhhhhhHHHHHHHhccchHHHHHHHHHHHhcC--------CceEEeehhh
Confidence 99999999999999999999999998544 55678999999999999999999999999886 5599999999
Q ss_pred hhhhcCCCCCCCC-cchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHH
Q 004550 334 AICKSRGSTRDGT-GVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 412 (745)
Q Consensus 334 ~l~~~~~~~~~~~-~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~ 412 (745)
++..+|..++++. ...++.+-.||+++||+++++.+-||.+||+.+.+||+|.||||+++.|+||.||+..+..||.+|
T Consensus 289 AiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred hhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 9999987765532 233444557889999999999999999999999999999999999999999999999999999999
Q ss_pred HccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 413 TNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 413 ~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
+.+|. +..+++++.+...-+.+||+||.++|.+|.+.|++. ....++++||.+|.+.+
T Consensus 369 Ts~Mt----l~~dVnle~li~~kddlSGAdIkAictEaGllAlRe-------------rRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 369 TSRMT----LAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE-------------RRMKVTMEDFKKAKEKV 426 (440)
T ss_pred ecccc----hhccccHHHHhhcccccccccHHHHHHHHhHHHHHH-------------HHhhccHHHHHHHHHHH
Confidence 99998 889999999999999999999999999999999974 34679999999998876
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=349.03 Aligned_cols=249 Identities=37% Similarity=0.594 Sum_probs=226.3
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
.|.-+|+| ||||++|++++ .+++.+|+.|++-|+++|+.||+|+|+|||||||||++||++|...++. |+-+-+++
T Consensus 165 kPtE~YsD--iGGldkQIqEL-vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT-FLKLAgPQ 240 (424)
T KOG0652|consen 165 KPTEQYSD--IGGLDKQIQEL-VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT-FLKLAGPQ 240 (424)
T ss_pred CCcccccc--cccHHHHHHHH-HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch-HHHhcchH
Confidence 48889999 99999999999 7999999999999999999999999999999999999999999998644 45578999
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcEE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
++..|.|+..+.+|+.|..|+... |+||||||+|++..+|..+.. +.....+.+-.||+++||+.+...+-
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEka--------P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKA--------PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccC--------CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 999999999999999999999875 679999999999988866543 22234455567889999999999999
Q ss_pred EEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 004550 371 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 450 (745)
Q Consensus 371 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 450 (745)
||++||+.+-+||+|+|.||+++.|+||.|+++.|.+|+++|.++|. ..+|+++++||+.|++|+|++..++|-+|
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn----v~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN----VSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC----CCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 451 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 451 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
.+.|++|. ...++.+||..++.+++.
T Consensus 389 GMiALRr~-------------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 389 GMIALRRG-------------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hHHHHhcc-------------cccccHHHHHHHHHHHHH
Confidence 99999974 346899999999988753
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.1e-43 Score=339.44 Aligned_cols=307 Identities=29% Similarity=0.444 Sum_probs=256.9
Q ss_pred cHHHHHHHHHHHhcCCccccCcEEEEEEcCe---EEEEEEEEeeecCcccccccccceecCCcEEEEEecCCCceeeecc
Q 004550 125 DAVLLANQLRKRFINQVMTAGQRVVFEYHGN---NYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQ 201 (745)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 201 (745)
+.+.|..|.+.+|.|.++..|+.+ |... .|.|+|.++.|. .|.+..+|.+.+...+...
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~yl---FD~~~~pdyAfkvI~~~P~---------~~~i~~st~i~vl~~~~~~------ 110 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYL---FDTRMFPDYAFKVIRVVPS---------GGGIITSTTIFVLETPREE------ 110 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceE---eecccccccceeEEEEeCC---------CCceecceEEEEecCcchh------
Confidence 568899999999999999999975 3333 378999999982 3444555555554433211
Q ss_pred ccCccccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC
Q 004550 202 REGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 281 (745)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~ 281 (745)
...++ ++++|+| +.|.+..++.. +.+...+.+|+.|. -..|++||+|||||||||++|+++|++. .
T Consensus 111 ----~~e~~--~~it~dd--ViGqEeAK~kc--rli~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~-k 176 (368)
T COG1223 111 ----DREII--SDITLDD--VIGQEEAKRKC--RLIMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEA-K 176 (368)
T ss_pred ----hhhhh--ccccHhh--hhchHHHHHHH--HHHHHHhhChHHhc---ccCcceeEEECCCCccHHHHHHHHhccc-C
Confidence 11222 6899999 99999887765 55556667886654 4689999999999999999999999997 5
Q ss_pred CCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc
Q 004550 282 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 361 (745)
Q Consensus 282 ~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 361 (745)
.+++.++..+++++|+|+..+.++++|+.|+..+ |||+||||+|+++-.|..++ -.+....++|.||+.||
T Consensus 177 vp~l~vkat~liGehVGdgar~Ihely~rA~~~a--------PcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelD 247 (368)
T COG1223 177 VPLLLVKATELIGEHVGDGARRIHELYERARKAA--------PCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELD 247 (368)
T ss_pred CceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC--------CeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhcc
Confidence 7888999999999999999999999999999874 88999999999987775432 23557789999999999
Q ss_pred CccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHH
Q 004550 362 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 362 ~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 441 (745)
|+..+.+++.||+||+|+.+|+++++ ||..+|+|.+|+.++|.+|++.+.++++ +.-+.+++.++..|.|+||+
T Consensus 248 gi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~SgR 321 (368)
T COG1223 248 GIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGMSGR 321 (368)
T ss_pred CcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCCCch
Confidence 99999999999999999999999999 9999999999999999999999999998 66788899999999999999
Q ss_pred HH-HHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhccc
Q 004550 442 EL-EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 442 dl-~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
|| +.+++.|...|+. ++...|+.+|++.|+.+.++..
T Consensus 322 dikekvlK~aLh~Ai~-------------ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 322 DIKEKVLKTALHRAIA-------------EDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred hHHHHHHHHHHHHHHH-------------hchhhhhHHHHHHHHHhhcccc
Confidence 99 5688888888876 3456799999999999765543
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=343.00 Aligned_cols=250 Identities=36% Similarity=0.580 Sum_probs=223.5
Q ss_pred ccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc
Q 004550 211 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 290 (745)
Q Consensus 211 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 290 (745)
+.|+++|+| |||.++|++.+ |+.++.|+.||+-|-++|+.||+|||||||||||||++||++|+... ..++.+-++
T Consensus 170 ekpdvty~d--vggckeqiekl-revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-acfirvigs 245 (435)
T KOG0729|consen 170 EKPDVTYSD--VGGCKEQIEKL-REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-ACFIRVIGS 245 (435)
T ss_pred cCCCccccc--ccchHHHHHHH-HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-ceEEeehhH
Confidence 348999999 99999999999 99999999999999999999999999999999999999999999974 556678899
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
+++.+|+|+..+.+|++|+.|+... -||||+||||++...|-.... +....++.+-.|++++||++.++|+
T Consensus 246 elvqkyvgegarmvrelf~martkk--------aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKK--------ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccc--------eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 9999999999999999999998764 589999999999887755422 1122344555688899999999999
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
-|+.+||+|+.+||+|+||||+++.++|.+||.+.|.+||++|.+.|. ...++-++-+|+.+.+-+|++|.++|.+
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms----verdir~ellarlcpnstgaeirsvcte 393 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS----VERDIRFELLARLCPNSTGAEIRSVCTE 393 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc----cccchhHHHHHhhCCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6678889999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 450 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
|.++|++-. ....|..||..|+..+..
T Consensus 394 agmfairar-------------rk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 394 AGMFAIRAR-------------RKVATEKDFLDAVNKVVK 420 (435)
T ss_pred hhHHHHHHH-------------hhhhhHHHHHHHHHHHHH
Confidence 999998632 235788999999987743
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=354.78 Aligned_cols=262 Identities=32% Similarity=0.506 Sum_probs=231.8
Q ss_pred ccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc
Q 004550 211 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 290 (745)
Q Consensus 211 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 290 (745)
++|.+.|+| |.||.+.++-| ++|+.+|+..|+.|+.+ .+|.+|||++||||||||+||+++|.++ +..|+-|+.+
T Consensus 205 ~np~ikW~D--Iagl~~AK~lL-~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc-~tTFFNVSss 279 (491)
T KOG0738|consen 205 RNPNIKWDD--IAGLHEAKKLL-KEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATEC-GTTFFNVSSS 279 (491)
T ss_pred cCCCcChHh--hcchHHHHHHH-HHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhh-cCeEEEechh
Confidence 458999999 99999987765 99999999999999874 6788999999999999999999999998 4667789999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCC-c-
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN-N- 368 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~-~- 368 (745)
.+.++|-|++|+.+|-+|+.|+... |++|||||||+||.+|+... ..+..+++.+.||-+|||+.... +
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyA--------PStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYA--------PSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhC--------CceeehhhHHHHHhcCCCcc-chhHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999999886 55999999999999998763 45678899999999999986533 3
Q ss_pred --EEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 004550 369 --VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 446 (745)
Q Consensus 369 --v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 446 (745)
|+|+|+||-|++||+||+| ||+..|+||+|+.++|..++++.++... +.++++++.|++.++||||+||.++
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~----~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE----LDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc----CCCCccHHHHHHHhcCCChHHHHHH
Confidence 8999999999999999999 9999999999999999999999999887 7889999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCC----CCcccCceeehhhHHHHHHhhhcccc
Q 004550 447 AKSAVSFALNRQLSMDDLTK----PVDEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 447 ~~~A~~~a~~r~~~~~~~~~----~~~~~~~~it~~df~~al~~~~ps~~ 492 (745)
|++|.+.+++|.+....-.. ........++++||+.|+..++|+.+
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999999998765322111 11222367999999999999999864
No 19
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-42 Score=364.11 Aligned_cols=243 Identities=34% Similarity=0.516 Sum_probs=222.3
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
.+++|+| +-|+|+.++++ .+.+ ..++.|+-|.+||-+-||||||+||||||||+|||++|.+. +.+|+...|+++
T Consensus 299 ~nv~F~d--VkG~DEAK~EL-eEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~sGSEF 373 (752)
T KOG0734|consen 299 KNVTFED--VKGVDEAKQEL-EEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYASGSEF 373 (752)
T ss_pred ccccccc--ccChHHHHHHH-HHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEeccccch
Confidence 5789999 99999999999 6655 46789999999999999999999999999999999999996 788999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
-..|+|...+++|++|..|+... ||||||||||++..+|..... ......++|||.+|||+..+.+|+||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~A--------PcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARA--------PCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--------CeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 99999999999999999999874 889999999999988876432 36788999999999999999999999
Q ss_pred EEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004550 373 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 373 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 452 (745)
|+||.|+.+|+||.||||||++|.+|.||..+|.+||+.|+++.. +..++|+..+|+-|.||+|+||++++..|+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~----~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP----LDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC----cccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 7789999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 453 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 453 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
+|... ....+++.|++.|-..+
T Consensus 520 kAa~d-------------ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 520 KAAVD-------------GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHhc-------------CcccccHHHHhhhhhhe
Confidence 88763 33468888888776665
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=358.46 Aligned_cols=287 Identities=30% Similarity=0.503 Sum_probs=247.3
Q ss_pred cccceecCCcEEEEEecCCCceeeeccccCc---cccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhC
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 251 (745)
.+...+.+.+.|.+.......+.+.+....+ ...+.+.|+++|+| |||++.+++++ ++++..|+.+|++|+++|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~~~v~~pl~~~~~~~~~G 175 (398)
T PTZ00454 99 LNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSD--IGGLDIQKQEI-REAVELPLTCPELYEQIG 175 (398)
T ss_pred cCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHH--cCCHHHHHHHH-HHHHHHHhcCHHHHHhcC
Confidence 3456678888888887666666555443222 22234568999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
+.+|+|+|||||||||||++|+++|+.+ +..++.+.++++..+|.|+++..++++|..|.... |+||||||
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l-~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~--------P~ILfIDE 246 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHT-TATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA--------PSIIFIDE 246 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcC--------CeEEEEEC
Confidence 9999999999999999999999999998 46677788999999999999999999999998764 67999999
Q ss_pred chhhhhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHH
Q 004550 332 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|.++.++.....+ .....+++.+++..||++....+++||++||+++.+||+++|||||++.|++++|+.++|.+||+
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 99999877543222 12355788899999999988889999999999999999999999999999999999999999999
Q ss_pred HHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcc
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.+++++. +..++++..++..++||+|+||.++|++|.+.|+++. ...++.+||..|+..+...
T Consensus 327 ~~~~~~~----l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~-------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 327 TITSKMN----LSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN-------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHhcCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHhc
Confidence 9998876 6788999999999999999999999999999999753 3479999999999987543
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-41 Score=363.75 Aligned_cols=233 Identities=39% Similarity=0.650 Sum_probs=217.1
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
.++.|+| |||+.++++-+ ++.++.|.++|.+|.+++++-+.|||||||||||||+||-++|..+ ...++.+.|+++
T Consensus 662 tgi~w~d--igg~~~~k~~l-~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPEl 737 (952)
T KOG0735|consen 662 TGIRWED--IGGLFEAKKVL-EEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPEL 737 (952)
T ss_pred CCCCcee--cccHHHHHHHH-HHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHH
Confidence 4588888 99999987766 9999999999999999999999999999999999999999999997 467888999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
+++|.|.+|+++|++|+.|+... |||||+||+|+++|+|+.. ++++.++++||||++|||.+...+|.|+
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~--------PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAK--------PCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccC--------CeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEE
Confidence 99999999999999999998764 8999999999999999875 4589999999999999999999999999
Q ss_pred EEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004550 373 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 373 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 452 (745)
|+|.||+.|||||+||||+|+.++.|+|++.+|.+|++....... +..++|++.+|..|+||+||||..++-.|.+
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~----~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL----KDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC----CccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776 6789999999999999999999999999999
Q ss_pred HHHHhhccccC
Q 004550 453 FALNRQLSMDD 463 (745)
Q Consensus 453 ~a~~r~~~~~~ 463 (745)
.|..+.+...+
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99987765433
No 22
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-40 Score=376.12 Aligned_cols=383 Identities=31% Similarity=0.465 Sum_probs=295.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC----CCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~----~~~~~v~ 288 (745)
..++|++ ||||+..+.++ ++++..|+.+|++|..+++.||+|+|||||||||||++||++|..+.. ..++.-.
T Consensus 260 ~~v~fd~--vggl~~~i~~L-KEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 260 SSVGFDS--VGGLENYINQL-KEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred cccCccc--cccHHHHHHHH-HHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 6889999 99999999999 999999999999999999999999999999999999999999988742 2344568
Q ss_pred cchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc
Q 004550 289 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 368 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 368 (745)
+++.+++|+|+.++.++.+|++|+..+| .|||+||||-|+|.|.+... ..+..++..||..|||+.+++.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qP--------SIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQP--------SIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCc--------eEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc
Confidence 9999999999999999999999999985 59999999999999866543 5678899999999999999999
Q ss_pred EEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 004550 369 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 448 (745)
Q Consensus 369 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 448 (745)
++|||+|||++.+||+++|||||+++++|++|+.+.|.+|+.+|++++.. .....-+..+|..+.||.|+||..+|.
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~---~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP---PISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC---CCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998762 234455789999999999999999999
Q ss_pred HHHHHHHHhhccccCC---CCCCcccCceeehhhHHHHHHhhhccccccccccccccc----------------cceeec
Q 004550 449 SAVSFALNRQLSMDDL---TKPVDEESIKVTMDDFLHALYEIVPAFGASTDDLERSRL----------------NGMVDC 509 (745)
Q Consensus 449 ~A~~~a~~r~~~~~~~---~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~----------------~g~~~~ 509 (745)
+|+..+++|.....-. ....+.....+...||..|+..+.|+...+......... .++.++
T Consensus 484 eAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~v 563 (1080)
T KOG0732|consen 484 EAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDV 563 (1080)
T ss_pred HHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhH
Confidence 9999999886543211 112344556699999999999998876553222111111 111111
Q ss_pred cCchhhHHHHHHHHHHHHHh---cCCCCceeeeeccCCCCChhHHHHHHHhhC-CCCeEEEeccccccccchhhHHHHHH
Q 004550 510 GDRHKHIYQRAMLLVEQVKV---SKGSPLVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISAESMIGLHESTKCAQIV 585 (745)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ll~GppGtGKT~la~~lA~~~-~~~~i~v~~~~~l~g~~~~~~~~~i~ 585 (745)
......+-+.....+..+.. ...--...+++.|..|.|-+.+..++-+.+ +++.....-+.++.-......+..|.
T Consensus 564 a~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv 643 (1080)
T KOG0732|consen 564 ASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIV 643 (1080)
T ss_pred HhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHH
Confidence 11111111111111111111 011112347888999999999999976554 55544443333332222334566799
Q ss_pred HHHHHHhcCCCeEEEEeccchhhhcC
Q 004550 586 KVFEDAYKSPLSIIILDDIERLLEYV 611 (745)
Q Consensus 586 ~~f~~a~~~~~~il~lDEid~l~~~~ 611 (745)
.+|.+|++..||||||-++|.++...
T Consensus 644 ~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 644 HIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred HHHHHHhccCCceeeccchhhhhhcC
Confidence 99999999999999999999887443
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.1e-38 Score=345.53 Aligned_cols=285 Identities=35% Similarity=0.585 Sum_probs=239.7
Q ss_pred ceecCCcEEEEEecCCCceeeeccccCc---cccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCC
Q 004550 178 GIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH 254 (745)
Q Consensus 178 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 254 (745)
..+.+...+.+.....+..+..+..... ...+...|+++|++ |||++++++++ ++++..|+.+|++|+.+|+.+
T Consensus 88 ~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~pl~~~~~~~~~g~~~ 164 (389)
T PRK03992 88 EKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYED--IGGLEEQIREV-REAVELPLKKPELFEEVGIEP 164 (389)
T ss_pred hHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHH--hCCcHHHHHHH-HHHHHHHhhCHHHHHhcCCCC
Confidence 3455556665555433333333222111 12233458999999 99999999999 999999999999999999999
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchh
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 334 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 334 (745)
|+|+|||||||||||++|+++|+.+ +..++.++++++..+|.|+++..++.+|+.+.... |+||||||+|.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~IlfiDEiD~ 235 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVQKFIGEGARLVRELFELAREKA--------PSIIFIDEIDA 235 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh-CCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcC--------CeEEEEechhh
Confidence 9999999999999999999999998 46678899999999999999999999999998764 67999999999
Q ss_pred hhhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHH
Q 004550 335 ICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 413 (745)
Q Consensus 335 l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 413 (745)
++..+.....+ .....+.+.+++..++++...+++.||++||+++.+|++++|||||+..|++++|+.++|.+||+.++
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 99877654322 22345677789999999888889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhccc
Q 004550 414 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 414 ~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
+++. +..+.++..++..|+||+|+||..+|++|.+.|+++. ...++.+||..|+..++++.
T Consensus 316 ~~~~----~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-------------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 316 RKMN----LADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD-------------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred ccCC----CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHhccc
Confidence 8876 5667899999999999999999999999999998752 23589999999999998865
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=343.30 Aligned_cols=285 Identities=32% Similarity=0.515 Sum_probs=243.1
Q ss_pred ccceecCCcEEEEEecCCCceeeeccccCc---cccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCC
Q 004550 176 ERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 252 (745)
Q Consensus 176 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 252 (745)
+...+.+.+.+.+.......+.+.+.+..+ ...+.+.|..+|+| |||++++++++ ++++..++.+|++|+.+|+
T Consensus 138 ~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~D--IgGl~~qi~~l-~e~v~lpl~~p~~~~~~gi 214 (438)
T PTZ00361 138 DKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYAD--IGGLEQQIQEI-KEAVELPLTHPELYDDIGI 214 (438)
T ss_pred CHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHH--hcCHHHHHHHH-HHHHHhhhhCHHHHHhcCC
Confidence 445667778887777666666555332111 11233458899999 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccc
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 332 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 332 (745)
.+|+|+|||||||||||++|+++|+++. ..++.+.++++.++|.|+.+..++.+|..|.... |+||||||+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~-~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~--------P~ILfIDEI 285 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS-ATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA--------PSIVFIDEI 285 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC-CCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC--------CcEEeHHHH
Confidence 9999999999999999999999999984 5677788999999999999999999999998764 679999999
Q ss_pred hhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 333 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 333 d~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
|.++.++....+ +.....+.+.++|..+|++....++.||++||+++.+|++++|+|||++.|+|++|+.++|.+||+.
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 999987754332 2223456677899999999888899999999999999999999999999999999999999999999
Q ss_pred HHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 412 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 412 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
+++++. +..+++++.++..++||+|+||..+|++|.+.|+++. ...|+.+||..|++.+..
T Consensus 366 ~~~k~~----l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~-------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 366 HTSKMT----LAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER-------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHhcCC----CCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------------CCccCHHHHHHHHHHHHh
Confidence 998886 6778999999999999999999999999999998753 346999999999998743
No 25
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=357.05 Aligned_cols=246 Identities=36% Similarity=0.587 Sum_probs=223.7
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
..++|.| +.|+++.+++| .|.+ ..+.+|+.|.++|.+.|+|+||+||||||||+||+|+|.+. +.+|+.++++++
T Consensus 306 t~V~FkD--VAG~deAK~El-~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKD--VAGVDEAKEEL-MEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEF 380 (774)
T ss_pred CCCcccc--ccCcHHHHHHH-HHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHH
Confidence 4599999 99999999999 6655 57889999999999999999999999999999999999996 789999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCC--CCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS--TRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~--~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
+..++|....+++++|..|+... ||||||||||++..+|+. ...++......+||||.+|||+....+++
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~a--------P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNA--------PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccC--------CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 99999999999999999999875 789999999999998852 22345667889999999999999999999
Q ss_pred EEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 004550 371 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 450 (745)
Q Consensus 371 vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 450 (745)
|+++||+++-+|+||+||||||++|.++.|+..+|.+|++.|+++.+.. .+++++..+|..|.||+|+||.++|.+|
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999987722 4778999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 451 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 451 ~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
+..|.++. ...++..||..|++.+
T Consensus 530 a~~a~r~~-------------~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 530 ALLAARKG-------------LREIGTKDLEYAIERV 553 (774)
T ss_pred HHHHHHhc-------------cCccchhhHHHHHHHH
Confidence 99998853 4578999999999854
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=318.83 Aligned_cols=262 Identities=29% Similarity=0.489 Sum_probs=226.6
Q ss_pred cccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEcc
Q 004550 210 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 289 (745)
Q Consensus 210 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 289 (745)
.+.|++.|+| |.||+..++.+ ++++.+|+..|++|.. +-.|.+||||||||||||++||+++|.+.+ ..++.|+.
T Consensus 125 ~EKPNVkWsD--VAGLE~AKeAL-KEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSS 199 (439)
T KOG0739|consen 125 REKPNVKWSD--VAGLEGAKEAL-KEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSS 199 (439)
T ss_pred ccCCCCchhh--hccchhHHHHH-HhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeeh
Confidence 4569999999 99999999888 9999999999999976 456789999999999999999999999975 66788999
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCC-Cc
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL-NN 368 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~-~~ 368 (745)
++++++|.|++|+.++++|+.|+.+. |+||||||||++|..|...++ +..+++-..+|-+|.|+-.. .+
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~k--------PSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENK--------PSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcC--------CcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999886 559999999999998876543 67899999999999998654 47
Q ss_pred EEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 004550 369 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 448 (745)
Q Consensus 369 v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 448 (745)
++|+|+||-|+.+|.|++| ||+..|+||+|+...|...|+.|+...+.. ..+.|+.+|++.|+||+|+||.-+++
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~---LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHV---LTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccc---cchhhHHHHHhhcCCCCcCceEEEeh
Confidence 9999999999999999999 999999999999999999999999887653 46789999999999999999999999
Q ss_pred HHHHHHHHhhccccCC------------CC------CC---------------cccCceeehhhHHHHHHhhhccc
Q 004550 449 SAVSFALNRQLSMDDL------------TK------PV---------------DEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 449 ~A~~~a~~r~~~~~~~------------~~------~~---------------~~~~~~it~~df~~al~~~~ps~ 491 (745)
.|.+...++....... .. +. ..-...+|+.||..++...+|..
T Consensus 345 DalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv 420 (439)
T KOG0739|consen 345 DALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV 420 (439)
T ss_pred hhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC
Confidence 9999888774321110 00 00 11235788999999999988875
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-37 Score=368.75 Aligned_cols=263 Identities=44% Similarity=0.693 Sum_probs=234.8
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
.|+++|++ |||++..++++ ++++..++.+|++++++|+++|+|+|||||||||||++|+++|+++ +.+++.+++++
T Consensus 447 ~~~~~~~d--i~g~~~~k~~l-~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~ 522 (733)
T TIGR01243 447 VPNVRWSD--IGGLEEVKQEL-REAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPE 522 (733)
T ss_pred ccccchhh--cccHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHH
Confidence 46888998 99999999988 9999999999999999999999999999999999999999999998 57788899999
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
+.++|+|+++++++++|..|+... ||||||||+|++++.++...+ ....++++++||..||++....+++|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~--------p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAA--------PAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcC--------CEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 999999999999999999998764 679999999999998865432 34678999999999999988889999
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|++||+++.||++++|||||++.|++|+|+.++|.+||+.++++++ +..+++++.+|+.|+||+|+||..+|++|.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~----~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP----LAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC----CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 678889999999999999999999999999
Q ss_pred HHHHHhhccccCC---CC--CCcccCceeehhhHHHHHHhhhccc
Q 004550 452 SFALNRQLSMDDL---TK--PVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 452 ~~a~~r~~~~~~~---~~--~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
..|+++....... .. ........++++||..|+..++|+.
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 9999876542211 10 0112345799999999999999986
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-38 Score=321.31 Aligned_cols=258 Identities=32% Similarity=0.484 Sum_probs=223.9
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhC-CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
-+++|+| ||||+..++++ ++.+..|+..|++|..-+ +++++|||||||||||||++|+++|++. +..++-|.++.
T Consensus 87 I~v~f~D--IggLe~v~~~L-~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~ 162 (386)
T KOG0737|consen 87 IGVSFDD--IGGLEEVKDAL-QELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSN 162 (386)
T ss_pred ceeehhh--ccchHHHHHHH-HHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcceeeccc
Confidence 3678888 99999999999 999999999999996444 4789999999999999999999999997 67778899999
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc--E
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN--V 369 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~--v 369 (745)
+.++|+|++++.++.+|..|...+ |+||||||+|.+...|+++ ..+....+-+++....||+....+ |
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~--------P~iIFIDEvds~L~~R~s~--dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQ--------PSIIFIDEVDSFLGQRRST--DHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcC--------cceeehhhHHHHHhhcccc--hHHHHHHHHHHHHHHhccccCCCCceE
Confidence 999999999999999999999776 6799999999999998443 347788899999999999988775 9
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
+|+|+||||.++|+|++| |+++.+.+++|+..+|.+||+..+++-+ +.+++|+.++|..|+||||.||..+|+.
T Consensus 233 lVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~----~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK----LEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred EEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc----cCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999998766 7799999999999999999999999999
Q ss_pred HHHHHHHhhcccc----CCCCC------C-----cccCceeehhhHHHHHHhhhcc
Q 004550 450 AVSFALNRQLSMD----DLTKP------V-----DEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 450 A~~~a~~r~~~~~----~~~~~------~-----~~~~~~it~~df~~al~~~~ps 490 (745)
|+...++..+..+ +.... . ......+.++||.++...+.++
T Consensus 307 Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 307 AALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 9999998876654 01100 0 0113567788888877766554
No 29
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=352.77 Aligned_cols=254 Identities=44% Similarity=0.700 Sum_probs=231.8
Q ss_pred cccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEcc
Q 004550 210 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 289 (745)
Q Consensus 210 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~ 289 (745)
+..+.++|++ +||++..++.+ ++++..++.+|+.|.+.|+++++|+|||||||||||++|+++|.++ +.+++.+.+
T Consensus 234 ~~~~~v~~~d--iggl~~~k~~l-~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~ 309 (494)
T COG0464 234 FEDEDVTLDD--IGGLEEAKEEL-KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKG 309 (494)
T ss_pred cCCCCcceeh--hhcHHHHHHHH-HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeC
Confidence 3447899999 99999999888 9999999999999999999999999999999999999999999987 567788899
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
++++++|+|+++++++++|..|+... ||||||||+|++++.++...+ +...++++++|..|+++....++
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~--------p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLA--------PSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCC--------CcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCce
Confidence 99999999999999999999999664 779999999999999876544 23479999999999999999999
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
+||++||+|+.+|++++|||||+..+++|+||.++|.+||+.|++..... +..++++..+++.++||+|+||..+|++
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865532 4678999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhccc
Q 004550 450 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
|.+.++.+.. ...++.+||..|+..++|+.
T Consensus 458 a~~~~~~~~~------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 458 AALEALREAR------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHHhc------------cCCccHHHHHHHHHhcCCCC
Confidence 9999998643 45699999999999998875
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=315.43 Aligned_cols=247 Identities=36% Similarity=0.591 Sum_probs=219.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
-+++|+. +||+..++.++ ++.++.|+.+|++|.++|+++|++++||||||||||++|+++|..+ +..++.+..+++
T Consensus 127 ~~~s~~~--~ggl~~qirel-re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-g~nfl~v~ss~l 202 (388)
T KOG0651|consen 127 RNISFEN--VGGLFYQIREL-REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-GVNFLKVVSSAL 202 (388)
T ss_pred cccCHHH--hCChHHHHHHH-HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-CCceEEeeHhhh
Confidence 5789998 99999999999 9999999999999999999999999999999999999999999999 566777889999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
.++|.|++.+.+|+.|..|+... |||||+||||++..++.+...+ .....+.+-.|++.||+++..++|-+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 99999999999999999999886 6899999999999888443221 12233445567888999999999999
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|.|||+|+.|||+|+||||+++.+++|+|++..|..|+++|...+. ...+.+.+.+.+.++||+|+|+.+.|++|.
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~----~~Geid~eaivK~~d~f~gad~rn~~tEag 350 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID----FHGEIDDEAILKLVDGFNGADLRNVCTEAG 350 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccc----ccccccHHHHHHHHhccChHHHhhhccccc
Confidence 9999999999999999999999999999999999999999998887 456677999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 452 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 452 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
++++. .+...+..+||..++.++.
T Consensus 351 ~Fa~~-------------~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 351 MFAIP-------------EERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ccccc-------------hhhHHHhHHHHHHHHHHHH
Confidence 88875 3455678899999887753
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-37 Score=338.38 Aligned_cols=246 Identities=35% Similarity=0.596 Sum_probs=226.2
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
..++|.| +.|.|+.++++ .+.+ ..+..|.-|..+|.+.|+|+||+||||||||+|||++|.+. +.+++.++++++
T Consensus 145 ~~v~F~D--VAG~dEakeel-~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~VPFf~iSGS~F 219 (596)
T COG0465 145 VKVTFAD--VAGVDEAKEEL-SELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 219 (596)
T ss_pred cCcChhh--hcCcHHHHHHH-HHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CCCceeccchhh
Confidence 5789999 99999999999 5555 67789999999999999999999999999999999999997 688999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCC-CCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~-~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
+..|+|-....+|++|.+|++.+ ||||||||||++..+|+... ++.....+.++|||.+|||+..+..|++
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a--------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv 291 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV 291 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC--------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE
Confidence 99999999999999999999875 78999999999999997553 3455667899999999999998889999
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|++||||+-+||||+|||||+++|.++.||..+|.+|++.|.++.+ +..++++..+|+.|.||+|+|+++++.+|+
T Consensus 292 iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~----l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 292 IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP----LAEDVDLKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC----CCCcCCHHHHhhhCCCcccchHhhhHHHHH
Confidence 9999999999999999999999999999999999999999998877 788999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 452 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 452 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
..|.++. ...+++.||..|...+.
T Consensus 368 l~aar~n-------------~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 368 LLAARRN-------------KKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHhc-------------CeeEeccchHHHHHHHh
Confidence 9999863 45799999999998873
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.3e-35 Score=328.99 Aligned_cols=246 Identities=25% Similarity=0.383 Sum_probs=210.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
++.+|++ |||++..++.+ ++.... .+.....+|+++|+|||||||||||||++|+++|+++ +.+++.++++.+
T Consensus 223 ~~~~~~d--vgGl~~lK~~l-~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l 295 (489)
T CHL00195 223 VNEKISD--IGGLDNLKDWL-KKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKL 295 (489)
T ss_pred CCCCHHH--hcCHHHHHHHH-HHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHh
Confidence 6788999 99999988877 332211 2344577899999999999999999999999999998 578889999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
.++|+|+++.+++++|..|+... ||||||||||.++..+.... ..+...+++.++++.|+. ...+++||
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~--------P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL~~l~~--~~~~V~vI 364 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALS--------PCILWIDEIDKAFSNSESKG-DSGTTNRVLATFITWLSE--KKSPVFVV 364 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcC--------CcEEEehhhhhhhccccCCC-CchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 99999999999999999998764 78999999999987654332 235678899999999884 34689999
Q ss_pred EEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004550 373 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 373 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 452 (745)
+|||+++.+|++++|+|||+..+++++|+.++|.+||+.|+++.... ...+.+++.+|+.|+||||+||+++|.+|..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876421 2347889999999999999999999999998
Q ss_pred HHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcccc
Q 004550 453 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 453 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 492 (745)
.|+.+ ...++.+||..++..+.|.+.
T Consensus 443 ~A~~~--------------~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 443 IAFYE--------------KREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHc--------------CCCcCHHHHHHHHHhcCCCcc
Confidence 88753 235899999999999999863
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.9e-35 Score=323.45 Aligned_cols=258 Identities=34% Similarity=0.585 Sum_probs=210.4
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC---------
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM--------- 282 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~--------- 282 (745)
.|+++|++ |||++++++++ ++++..|+.+|++|..+|+++|+|+|||||||||||++|+++|+.+...
T Consensus 176 ~p~v~~~d--IgGl~~~i~~i-~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 176 VPDVTYAD--IGGLDSQIEQI-RDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred CCCCCHHH--cCChHHHHHHH-HHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 47899999 99999999999 9999999999999999999999999999999999999999999998422
Q ss_pred CcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC
Q 004550 283 EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 362 (745)
Q Consensus 283 ~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~ 362 (745)
.++.+.+++++++|.|++++.++.+|+.+..... ...|+||||||+|.++.+++... +.+....++++||..||+
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~----~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKAS----DGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDG 327 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhh----cCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcc
Confidence 2345678899999999999999999999886531 12478999999999998876432 234567889999999999
Q ss_pred ccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHcc-ccccCCC-----CCcccHHHHHH---
Q 004550 363 VESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK-MKENSFL-----APDVNLQELAA--- 433 (745)
Q Consensus 363 ~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~-~~~~~~l-----~~~~~l~~la~--- 433 (745)
+...++++||++||+++.|||+++|||||+.+|+|++|+.++|.+||+.++.. ++....+ ....++..+++
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999999999764 2210000 01112222222
Q ss_pred --------------------------HcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHh
Q 004550 434 --------------------------RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 486 (745)
Q Consensus 434 --------------------------~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 486 (745)
.++.+||++|.++|..|...|+++.+.. ....++.+|+..|+..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~---------~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG---------GQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc---------CCcCcCHHHHHHHHHH
Confidence 2456889999999999999998887631 2246889999998874
No 34
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=304.77 Aligned_cols=239 Identities=21% Similarity=0.281 Sum_probs=204.3
Q ss_pred ccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccc
Q 004550 497 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLH 576 (745)
Q Consensus 497 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~ 576 (745)
++....++|+....+.+.++++.+....+.+...+..||+++|||||||||||++|||+|+..+..|+++.+++ ++-+|
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKY 225 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKY 225 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHH
Confidence 44445567777776777788888888899999999999999999999999999999999999999999998888 66777
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC-CCCcchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCCCc
Q 004550 577 ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP-IGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDS 653 (745)
Q Consensus 577 ~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~-~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l~~ 653 (745)
.|+....+|++|.-|+..+||||||||||++...|- .+....+.++.+++++|.++. ....+|=||+|||+++.|||
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 777788999999999999999999999999997762 333345677777776666553 34568999999999999999
Q ss_pred cccc-cccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCC
Q 004550 654 VGIC-DAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGRE 728 (745)
Q Consensus 654 ~~l~-~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~ 728 (745)
+.|| +|||+.|+||+|+.+.+.+||+- .....+-++..++....+.+..++-.++..|...| +.+++.
T Consensus 306 ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~A-------iR~~R~ 378 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFA-------IRERRD 378 (406)
T ss_pred hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHH-------HHhccC
Confidence 9999 99999999999999999999994 34555677888888888999999999999888877 446788
Q ss_pred CccHhHHHHHHHHHh
Q 004550 729 KIKISHFYDCLQDMV 743 (745)
Q Consensus 729 ~I~~~~~~~al~~~~ 743 (745)
.|+++||.+|+++++
T Consensus 379 ~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 379 EVTMEDFLKAVEKVV 393 (406)
T ss_pred eecHHHHHHHHHHHH
Confidence 999999999999876
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2e-34 Score=314.60 Aligned_cols=280 Identities=36% Similarity=0.582 Sum_probs=231.9
Q ss_pred eecCCcEEEEEecCCCceeeeccccC---ccccccccCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCC
Q 004550 179 IITNETYFVFEASNDSGIKIVNQREG---ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV 255 (745)
Q Consensus 179 ~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 255 (745)
.+.+.+.+.+.....+.+.+.+.... ..-.+.+.|.+.|++ |||++++++++ ++++..++.+|+.+..+|+.+|
T Consensus 80 ~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~~~~~~~~~~~~g~~~p 156 (364)
T TIGR01242 80 SLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYED--IGGLEEQIREI-REAVELPLKHPELFEEVGIEPP 156 (364)
T ss_pred HCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHH--hCChHHHHHHH-HHHHHHHhcCHHHHHhcCCCCC
Confidence 34444555555444333333332221 122334558999999 99999999999 8999999999999999999999
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhh
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAI 335 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l 335 (745)
+|+|||||||||||++|+++|+.+. ..++.+.++++..+|.|+....++.+|..+.... |+||||||+|.+
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~-~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~il~iDEiD~l 227 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETN-ATFIRVVGSELVRKYIGEGARLVREIFELAKEKA--------PSIIFIDEIDAI 227 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCC-CCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcC--------CcEEEhhhhhhh
Confidence 9999999999999999999999984 5667788899999999999999999999887654 679999999999
Q ss_pred hhcCCCCCCC-CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHc
Q 004550 336 CKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTN 414 (745)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~ 414 (745)
+..+.....+ .....+.+.+++..++++...+++.||++||+++.+|++++|||||++.|+++.|+.++|.+||+.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 228 AAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred ccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh
Confidence 8776543221 223456678888889988877899999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 415 KMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 415 ~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
++. +..++++..+++.+.||+|+||..+|++|.+.|+++. ...|+.+||..|+..+
T Consensus 308 ~~~----l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~-------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 308 KMK----LAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE-------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred cCC----CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------------CCccCHHHHHHHHHHh
Confidence 776 5567889999999999999999999999999998752 3469999999998764
No 36
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-34 Score=325.30 Aligned_cols=247 Identities=36% Similarity=0.627 Sum_probs=219.2
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
|.++|+| |+|++..++++ ++++.. +.+|+.+.++|.++|+|+|||||||||||++|+++|+++ +.+++.++++++
T Consensus 50 ~~~~~~d--i~g~~~~k~~l-~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~ 124 (495)
T TIGR01241 50 PKVTFKD--VAGIDEAKEEL-MEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 124 (495)
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeeccHHHH
Confidence 7899999 99999999998 677665 789999999999999999999999999999999999997 577888999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
.+.+.|.+++.++.+|+.|.... |+||||||+|.++++++.... .......++++||..||++....+++|
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~--------p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--------CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 99999999999999999998764 679999999999988765322 233456789999999999988889999
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|++||+++.+||+++|||||++.|+++.|+.++|.+||+.+++..+ +..+.++..+++.+.||+|+||..+|++|.
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LAPDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CCcchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 456788999999999999999999999998
Q ss_pred HHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 452 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 452 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
..+.++. ...++.+||..|+..+..
T Consensus 273 ~~a~~~~-------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARKN-------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHcC-------------CCCCCHHHHHHHHHHHhc
Confidence 8776532 246899999999997754
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=9.4e-33 Score=325.47 Aligned_cols=437 Identities=18% Similarity=0.272 Sum_probs=284.3
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 286 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 286 (745)
.+++ +-|.++++.+++ +.+.. +...++||+||||||||++|+.+|+.+. +..++.
T Consensus 180 ~l~~--~igr~~ei~~~~-~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDP--LIGREDELERTI-QVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCc--ccCcHHHHHHHH-HHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 5666 889999998874 33322 2345799999999999999999999871 345667
Q ss_pred Eccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 287 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 287 v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
++...++ .+|.|+.++.++++|+.+.... ++||||||+|.|++.+....++ ..+.+.|+..+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~~~~----~~~~~~L~~~l~--- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEP--------NAILFIDEIHTIVGAGATSGGS----MDASNLLKPALS--- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccC--------CeEEEEecHHHHhccCCCCCcc----HHHHHHHHHHHh---
Confidence 7877887 4899999999999999987643 5699999999998765432211 112233333332
Q ss_pred CCCcEEEEEEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccC-CCCCcccHHHHHHHcCCC
Q 004550 365 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENS-FLAPDVNLQELAARTKNY 438 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~-~l~~~~~l~~la~~t~g~ 438 (745)
++.+.+||+||..+ .+|+++.| ||. .|+++.|+.+++.+||+.....+.... ....+..+..++..+..|
T Consensus 309 -~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 309 -SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred -CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 47899999999744 47999999 997 799999999999999998776543222 123455677777777766
Q ss_pred CHH-----HHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh--hccccccccccc------cccccc
Q 004550 439 SGA-----ELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLE------RSRLNG 505 (745)
Q Consensus 439 sg~-----dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~--~ps~~~~~~~~~------~~~~~g 505 (745)
-+. ..-.++.+|+....-+. .......++.+|+..++... .|.......+.. ......
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~---------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~ 455 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRP---------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAK 455 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCc---------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcc
Confidence 533 22345555554321110 00123568999999999876 333222211111 111112
Q ss_pred eeeccCchhhHHHHHHHHHHHHH---hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc--------cc
Q 004550 506 MVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--------IG 574 (745)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l--------~g 574 (745)
+++ .+++++.+...+...+ ..+.+|..++||+||||||||++|+++|..++.+++.+++++.. +|
T Consensus 456 v~G----Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 456 IFG----QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred eeC----cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 222 2233333333333322 23445667899999999999999999999999999999877632 22
Q ss_pred cchhh-HHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEec
Q 004550 575 LHEST-KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTT 645 (745)
Q Consensus 575 ~~~~~-~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~tt 645 (745)
...+. ..+....+.+..++.+.+||+|||||++. ..+.+.|+..|+.-. ...+++++|+||
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 21110 01112334455567888999999999985 446666777666421 112467888899
Q ss_pred CCCCC-------------------------CCccccccccceEEEcCCCCHHHHHHHHHHcc--------------CCCH
Q 004550 646 SEVSF-------------------------LDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN--------------VFAE 686 (745)
Q Consensus 646 n~~~~-------------------------l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~--------------~~~~ 686 (745)
|.... +.| .+.+|++.++.|++++.+++.+|++..- .+++
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~p-ef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSP-EFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcCh-HHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 86321 112 4558999999999999999999998621 2234
Q ss_pred HHHHHHHHHC-C-CCcHHHHHHHHHHH
Q 004550 687 EDVDSASEAL-N-DMPIKKLYMLIEMA 711 (745)
Q Consensus 687 ~d~~~~~~~~-~-~~~ir~ll~~l~~a 711 (745)
+-+..++... . ..++|.+...++..
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 4444455432 2 56677776666543
No 38
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-32 Score=312.89 Aligned_cols=436 Identities=18% Similarity=0.247 Sum_probs=275.7
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 286 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 286 (745)
.++. +-|-++++.+++ +.+.. ....++||+||||||||++|+.+|..+. +..++.
T Consensus 184 ~~~~--liGR~~ei~~~i-~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 184 GIDP--LIGREKELERAI-QVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CCCc--CcCCCHHHHHHH-HHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 3444 788888888884 33322 2345789999999999999999998751 223334
Q ss_pred Eccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 287 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 287 v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
++...++ .+|.|+.+++++.+|..+.... ++||||||+|.|+..+....+ ......++..++
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~--------~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L------- 311 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDT--------NSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL------- 311 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHhcC--------CCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH-------
Confidence 4445555 4788999999999999887543 459999999999876543211 111122333333
Q ss_pred CCCcEEEEEEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCC-CCcccHHHHHHHcCCC
Q 004550 365 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 438 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 438 (745)
.++.+.+||+||.++ ..|++|.| ||. .|.++.|+.+++.+||+.+..++.....+ ..+..+...+..+..|
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 347899999999875 46999999 996 79999999999999999887776543222 2333344555544443
Q ss_pred -----CHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh--hccccccccccc------cccccc
Q 004550 439 -----SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLE------RSRLNG 505 (745)
Q Consensus 439 -----sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~--~ps~~~~~~~~~------~~~~~g 505 (745)
-+...-.++.+|+... |.... ......++.+|+...+... .|.......+.. ......
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~-------~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ 459 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPV-------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcc-------cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcce
Confidence 3445667788877543 11110 0112357888888888765 233222111110 100111
Q ss_pred eeeccCchhhHHHHHHHHHHHHH---hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc--------ccc
Q 004550 506 MVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--------MIG 574 (745)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~--------l~g 574 (745)
+++ .+++++.+...+...+ ....+|..++||+||||||||.+|+++|...+.+|+.+++++. ++|
T Consensus 460 ViG----Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 460 VFG----QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred EeC----cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 222 2333333333333222 2234566789999999999999999999999999999987664 233
Q ss_pred cchhhH-HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC---C-----CCCcEEEEEec
Q 004550 575 LHESTK-CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP---P-----KGKKLLVIGTT 645 (745)
Q Consensus 575 ~~~~~~-~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---~-----~~~~v~vI~tt 645 (745)
...+.. ...-..+.+..++.+.+||||||||++. ..+++.|+..|+.-. . ..+++++|.||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 221100 0011123344456778999999999985 456777777776421 1 12467899999
Q ss_pred CCCC-------------------------CCCccccccccceEEEcCCCCHHHHHHHHHHc-----------c---CCCH
Q 004550 646 SEVS-------------------------FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL-----------N---VFAE 686 (745)
Q Consensus 646 n~~~-------------------------~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-----------~---~~~~ 686 (745)
|.-. .+.| .+.+|++.++.|++++.+++.+|++.. + .+++
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~p-efl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP-EFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 8321 0112 445899999999999999999998752 1 2344
Q ss_pred HHHHHHHHHCC--CCcHHHHHHHHHH
Q 004550 687 EDVDSASEALN--DMPIKKLYMLIEM 710 (745)
Q Consensus 687 ~d~~~~~~~~~--~~~ir~ll~~l~~ 710 (745)
+-+..++.... ..++|.+..+++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 44454554332 4566666665544
No 39
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.5e-31 Score=294.96 Aligned_cols=369 Identities=14% Similarity=0.146 Sum_probs=258.7
Q ss_pred eEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHH
Q 004550 324 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDEN 403 (745)
Q Consensus 324 p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~ 403 (745)
|.|+++.++|.++.. ..+.+.+ ..+.... ......+||.+.+ ..+++.|.+ +-..+++|+|+.+
T Consensus 82 ~~~~vl~d~h~~~~~-------~~~~r~l-~~l~~~~---~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ 145 (489)
T CHL00195 82 PALFLLKDFNRFLND-------ISISRKL-RNLSRIL---KTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTES 145 (489)
T ss_pred CcEEEEecchhhhcc-------hHHHHHH-HHHHHHH---HhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHH
Confidence 679999999999821 1222322 2233222 2234444444432 457777775 4558899999999
Q ss_pred HHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHH
Q 004550 404 GRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHA 483 (745)
Q Consensus 404 ~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~a 483 (745)
++.++++........ ..++.+++.+++.+.|++-.+++.++..+... . ..++.++....
T Consensus 146 ei~~~l~~~~~~~~~---~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~--~----------------~~~~~~~~~~i 204 (489)
T CHL00195 146 EIKKELTRLIKSLNI---KIDSELLENLTRACQGLSLERIRRVLSKIIAT--Y----------------KTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHHHhcCC---CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c----------------CCCChhhHHHH
Confidence 999999877653321 24566789999999999999999888764321 0 11333333333
Q ss_pred HHhhhcccccccccccccc-ccceeeccCchhhHHHHHHHH----HHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhh
Q 004550 484 LYEIVPAFGASTDDLERSR-LNGMVDCGDRHKHIYQRAMLL----VEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID 558 (745)
Q Consensus 484 l~~~~ps~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~ 558 (745)
+++.+...... ..++... ...+.++++ ++.+++++... .......+..+++++|||||||||||++|+++|.+
T Consensus 205 ~~~k~q~~~~~-~~le~~~~~~~~~dvgG-l~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 205 LEEKKQIISQT-EILEFYSVNEKISDIGG-LDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHHHHHHhhh-ccccccCCCCCHHHhcC-HHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 33222111100 0000000 011223333 34444555443 33445667788999999999999999999999999
Q ss_pred CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCC--CCcchHHHHHHHHHHHhcCCCCC
Q 004550 559 SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI--GPRFSNIISQTMLVLLKRLPPKG 636 (745)
Q Consensus 559 ~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~--g~~~~~~~~~~Ll~~l~~~~~~~ 636 (745)
++.+|+.++... +.+.+.++++.+++++|+.|+...||||||||||.++..+.. ....+++++..|+..|+. ..
T Consensus 283 ~~~~~~~l~~~~-l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---~~ 358 (489)
T CHL00195 283 WQLPLLRLDVGK-LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---KK 358 (489)
T ss_pred hCCCEEEEEhHH-hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc---CC
Confidence 999999997765 556667777889999999999999999999999999865322 223567777788877764 34
Q ss_pred CcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc------CCCHHHHHHHHHHCCCCcHHHHHHHHH
Q 004550 637 KKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN------VFAEEDVDSASEALNDMPIKKLYMLIE 709 (745)
Q Consensus 637 ~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~------~~~~~d~~~~~~~~~~~~ir~ll~~l~ 709 (745)
..++||||||+++.+|++.+| +|||..++|+.|+.+++.+|++... ...+.++..++....+.+.+++..++.
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 579999999999999998877 8999999999999999999999641 123567888888888999999999888
Q ss_pred HHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 710 MAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 710 ~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.|...+.. ....++.+||.+|++++.
T Consensus 439 eA~~~A~~--------~~~~lt~~dl~~a~~~~~ 464 (489)
T CHL00195 439 EAMYIAFY--------EKREFTTDDILLALKQFI 464 (489)
T ss_pred HHHHHHHH--------cCCCcCHHHHHHHHHhcC
Confidence 88776532 235699999999998765
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.4e-33 Score=317.46 Aligned_cols=245 Identities=36% Similarity=0.622 Sum_probs=216.7
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
+.++|+| |+|+++.++++ ++.+. .+..|+.|..+|..+|+|+||+||||||||++|+++|.++ +.+++.++++++
T Consensus 178 ~~~~f~d--v~G~~~~k~~l-~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~is~s~f 252 (638)
T CHL00176 178 TGITFRD--IAGIEEAKEEF-EEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSISGSEF 252 (638)
T ss_pred CCCCHHh--ccChHHHHHHH-HHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeeccHHHH
Confidence 5789999 99999999888 66654 4778899999999999999999999999999999999998 678888999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
...+.|.....++.+|..|.... ||||||||+|.++.+++...+ +.......+++||..||++....+++|
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~~~--------P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKENS--------PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCC--------CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 99999998899999999998654 789999999999987754322 233456789999999999988889999
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|++||+++.+|++++|||||+++|.+++|+.++|.+||+.|++... +.++.++..+|+.+.||+|+||.++|++|+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998744 567889999999999999999999999998
Q ss_pred HHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 452 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 452 ~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
..+.++. ...++.+||..|+..+
T Consensus 401 l~a~r~~-------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARRK-------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhC-------------CCCcCHHHHHHHHHHH
Confidence 8877642 2368999999999876
No 41
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=9.7e-32 Score=320.10 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=177.3
Q ss_pred hhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhc---------------------------
Q 004550 244 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF--------------------------- 296 (745)
Q Consensus 244 ~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~--------------------------- 296 (745)
+....++|+++|+||||+||||||||+|||++|.+. +.+++.++++++++++
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 446789999999999999999999999999999997 6888999999998754
Q ss_pred --------------cchhHH--HHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhc
Q 004550 297 --------------VGETEK--NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 360 (745)
Q Consensus 297 --------------~g~~e~--~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~ 360 (745)
.++.+. .++.+|+.|+..+ ||||||||||+++.+. .....+++|+..|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S--------PCIIFIDEIDaL~~~d--------s~~ltL~qLLneL 1761 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMS--------PCIIWIPNIHDLNVNE--------SNYLSLGLLVNSL 1761 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC--------CeEEEEEchhhcCCCc--------cceehHHHHHHHh
Confidence 122222 4899999999875 7899999999998651 1123478999999
Q ss_pred cCcc---CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHH--HccccccCCCCC-cccHHHHHHH
Q 004550 361 DGVE---SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH--TNKMKENSFLAP-DVNLQELAAR 434 (745)
Q Consensus 361 d~~~---~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~--~~~~~~~~~l~~-~~~l~~la~~ 434 (745)
|+.. ...+|+||||||+|+.|||||+|||||+++|+++.|+..+|.+++..+ ++++. +.. .+++..+|+.
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~----L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH----LEKKMFHTNGFGSI 1837 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCC----CCcccccHHHHHHh
Confidence 9864 456899999999999999999999999999999999999999998864 34443 332 3579999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 435 TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 435 t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
|.||+||||+++|.+|+..|+++. ...|+.+++..|+.....
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~-------------ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQK-------------KSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHh
Confidence 999999999999999999999863 346889999999987753
No 42
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=5.3e-31 Score=305.00 Aligned_cols=247 Identities=35% Similarity=0.568 Sum_probs=217.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 293 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 293 (745)
...|++ ++|++..++++ .+.+.. +..|..+..++...|+|+||+||||||||++|++++.++ +.+++.++++++.
T Consensus 148 ~~~~~d--i~g~~~~~~~l-~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~ 222 (644)
T PRK10733 148 KTTFAD--VAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFV 222 (644)
T ss_pred hCcHHH--HcCHHHHHHHH-HHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhH
Confidence 456788 99999999888 666655 456778888999999999999999999999999999998 5778889999999
Q ss_pred hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC-CCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 294 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 294 ~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
..+.|.....++.+|..+.... ||||||||+|.++.+++...+ +.....+++++||..||++....+++||
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~--------P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAA--------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcC--------CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 9999999999999999987654 789999999999988765322 2334567899999999999988899999
Q ss_pred EEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004550 373 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 373 ~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 452 (745)
++||+++.+|++++|||||+++|++++|+.++|.+||+.|+++.+ +..++++..+++.+.||+|+||.++|++|+.
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~----l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP----LAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC----CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876 6678899999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcc
Q 004550 453 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 453 ~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.|.++ ....++.+||..|+..+.+.
T Consensus 371 ~a~r~-------------~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 371 FAARG-------------NKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHc-------------CCCcccHHHHHHHHHHHhcc
Confidence 98864 23468999999998877543
No 43
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=9.1e-31 Score=271.40 Aligned_cols=196 Identities=22% Similarity=0.294 Sum_probs=161.5
Q ss_pred hhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEE
Q 004550 248 SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVI 327 (745)
Q Consensus 248 ~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il 327 (745)
..+|+++|++++||||||||||++|+++|+++ +..++.++++++.++|+|++|+++|++|..|...... ...||||
T Consensus 141 ~~~~ik~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~---~~aPcVL 216 (413)
T PLN00020 141 ALPNIKVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK---KGKMSCL 216 (413)
T ss_pred hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc---cCCCeEE
Confidence 34689999999999999999999999999999 5678899999999999999999999999999865311 1258999
Q ss_pred EEccchhhhhcCCCCCCCCcchhHHH-HHHHHhccCc------------cCCCcEEEEEEeCCCCCCChhhhCCCCccce
Q 004550 328 IFDEIDAICKSRGSTRDGTGVHDSIV-NQLLTKIDGV------------ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 394 (745)
Q Consensus 328 ~iDEid~l~~~~~~~~~~~~~~~~~~-~~LL~~~d~~------------~~~~~v~vI~~tn~~~~id~al~r~gRf~~~ 394 (745)
||||||+++++++..+ ..+..+++ .+||+.||+. +...+++||+|||+|+.|||+|+|||||++.
T Consensus 217 FIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 217 FINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred EEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 9999999999987432 34455565 7999998863 3456799999999999999999999999986
Q ss_pred EEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC----CCHHHHHHHHHHHHHHHHH
Q 004550 395 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN----YSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g----~sg~dl~~l~~~A~~~a~~ 456 (745)
+ ..|+.++|.+||+.++++.. + +..++..|+..+.| |.|+--..+..++...-+.
T Consensus 295 i--~lPd~e~R~eIL~~~~r~~~----l-~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 295 Y--WAPTREDRIGVVHGIFRDDG----V-SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred e--CCCCHHHHHHHHHHHhccCC----C-CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 4 58999999999999998865 3 35778888888876 6676666666666554443
No 44
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=282.60 Aligned_cols=261 Identities=31% Similarity=0.432 Sum_probs=222.0
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
.+++.|+| |+|++...+.+ .+++..|+..|++|..+ -.+++|+||.||||+|||+|++++|.+. +..+..++++.
T Consensus 147 ~~~v~~~d--i~gl~~~k~~l-~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~-~atff~iSass 221 (428)
T KOG0740|consen 147 LRNVGWDD--IAGLEDAKQSL-KEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATES-GATFFNISASS 221 (428)
T ss_pred CCcccccC--CcchhhHHHHh-hhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhh-cceEeeccHHH
Confidence 36788998 99999988877 89999999999988765 3567899999999999999999999998 45677899999
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccC--CCcE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--LNNV 369 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~--~~~v 369 (745)
+.++|+|++++.++.+|.-|+..+| .|+||||+|.++.+|... ..+..+++..++|-.+++... .++|
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qP--------svifidEidslls~Rs~~--e~e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQP--------SVIFIDEIDSLLSKRSDN--EHESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCC--------eEEEechhHHHHhhcCCc--ccccchhhhhHHHhhhccccCCCCCeE
Confidence 9999999999999999999999874 599999999999988433 335677888898888887654 3479
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
+||||||+|+.+|++++| ||...++||+|+.+.|..+|+..+.+.+. ...+.+++.+++.|+||+|.||.++|++
T Consensus 292 lvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~---~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 292 LVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPN---GLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred EEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 999999999999999999 99999999999999999999999887632 3456789999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcccc
Q 004550 450 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 492 (745)
|++--++......++..........++..||..++..++|+..
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 9987765543321222233456678999999999999998864
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=1.4e-28 Score=293.36 Aligned_cols=449 Identities=19% Similarity=0.223 Sum_probs=273.3
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 286 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 286 (745)
.++. +-|.+++++++ .+.+. .+...+++|+||||||||++|+.+|..+. +..++.
T Consensus 177 ~~~~--~igr~~ei~~~-~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDP--VIGREKEIERV-IQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCC--CCCcHHHHHHH-HHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 4555 89999999888 34332 23456899999999999999999999873 346777
Q ss_pred Eccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 287 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 287 v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
++...++ .+|.|+.+++++.+++.+.... ++||||||+|.|...++... ......+ |...+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~g--~~~~a~l---Lkp~l---- 303 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENN--------NIILVIDEVHTLIGAGAAEG--AIDAANI---LKPAL---- 303 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcC--------CeEEEEecHHHHhcCCCCCC--cccHHHH---hHHHH----
Confidence 8888877 4889999999999999987543 56999999999987654321 1112222 22222
Q ss_pred CCCcEEEEEEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCC-CCcccHHHHHHHcCCC
Q 004550 365 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 438 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 438 (745)
.++.+.+||+|+..+ ..|+++.+ ||. .|.++.|+.++...|++.....+.....+ .++..+..++..+.+|
T Consensus 304 ~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 304 ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 357899999999865 36999999 997 58999999999999998765433221111 3445577778888776
Q ss_pred CHH-----HHHHHHHHHHHHH-HHhh-cc----------------------ccCCC------------------------
Q 004550 439 SGA-----ELEGVAKSAVSFA-LNRQ-LS----------------------MDDLT------------------------ 465 (745)
Q Consensus 439 sg~-----dl~~l~~~A~~~a-~~r~-~~----------------------~~~~~------------------------ 465 (745)
.+. ..-.++.+|+... +... .+ ..+..
T Consensus 381 i~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKK 460 (821)
T ss_pred CccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 2223444443322 1100 00 00000
Q ss_pred --CCCcccCceeehhhHHHHHHhh--hcccccccccccccc-c-cceeeccCchhhHHHHHHHHHHHHH---hcCCCCce
Q 004550 466 --KPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLERSR-L-NGMVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLV 536 (745)
Q Consensus 466 --~~~~~~~~~it~~df~~al~~~--~ps~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 536 (745)
.........|+.+|+...+... .|.......+..... + ..+-..--..+++++.+...+...+ ..+.+|..
T Consensus 461 ~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~ 540 (821)
T CHL00095 461 TEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA 540 (821)
T ss_pred hhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce
Confidence 0000011346777777766654 233222221111000 0 0000000112333433333332222 23455667
Q ss_pred eeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccc--------cccchh-hHHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 537 TCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHES-TKCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l--------~g~~~~-~~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
++||+||||||||++|+++|..+ +.++++++.++.. +|...+ ........+.+..++.+.+||+||||
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 89999999999999999999875 4678888766531 221100 00011234566677788899999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCCC--------C-------C--c------
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSF--------L-------D--S------ 653 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~~--------l-------~--~------ 653 (745)
|++. ..+.+.|+..|+.-. ...++.++|.|||.... + + .
T Consensus 621 eka~----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~ 690 (821)
T CHL00095 621 EKAH----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRL 690 (821)
T ss_pred hhCC----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHH
Confidence 9975 445666666666421 11346788989885321 0 0 0
Q ss_pred -------------cccccccceEEEcCCCCHHHHHHHHHHc--------------cCCCHHHHHHHHHHC-C-CCcHHHH
Q 004550 654 -------------VGICDAFSVTYHVPTLKTDDAKKVLKQL--------------NVFAEEDVDSASEAL-N-DMPIKKL 704 (745)
Q Consensus 654 -------------~~l~~rf~~~i~~p~~~~~~~~~Il~~~--------------~~~~~~d~~~~~~~~-~-~~~ir~l 704 (745)
..+.+|+|.++.|.+++.+++.+|++.. -.++++-...++... . ..++|.+
T Consensus 691 ~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l 770 (821)
T CHL00095 691 SNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPL 770 (821)
T ss_pred HHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhH
Confidence 0245899999999999999999998852 123344444455542 2 5566766
Q ss_pred HHHHHH
Q 004550 705 YMLIEM 710 (745)
Q Consensus 705 l~~l~~ 710 (745)
-.+++.
T Consensus 771 ~r~i~~ 776 (821)
T CHL00095 771 RRAIMR 776 (821)
T ss_pred HHHHHH
Confidence 665544
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=7.2e-28 Score=285.39 Aligned_cols=190 Identities=17% Similarity=0.284 Sum_probs=135.0
Q ss_pred CcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC---------CCcE
Q 004550 215 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG---------MEPK 285 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~---------~~~~ 285 (745)
-.+++ +-|.++++.+++. .+.. +...+++|+||||||||++|+.+|+.+.. ..++
T Consensus 184 ~~ld~--~iGr~~ei~~~i~-~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 184 GKIDP--VLGRDDEIRQMID-ILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred CCCCc--ccCCHHHHHHHHH-HHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 35566 8889998776632 2211 22347899999999999999999998731 2244
Q ss_pred EEccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc
Q 004550 286 IVNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 363 (745)
Q Consensus 286 ~v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 363 (745)
.++...+. .+|.|+.++.++++++.+.... .++||||||+|.+.+.++... .. + .-+.|+..+
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~-------~~~ILfIDEih~l~~~g~~~~--~~--d-~~n~Lkp~l--- 312 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASP-------QPIILFIDEAHTLIGAGGQAG--QG--D-AANLLKPAL--- 312 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcC-------CCeEEEEeChHHhccCCCccc--cc--c-HHHHhhHHh---
Confidence 45555555 3788999999999999986532 257999999999987654321 11 1 222233332
Q ss_pred cCCCcEEEEEEeCCCCC-----CChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccC-CCCCcccHHHHHHHcCC
Q 004550 364 ESLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENS-FLAPDVNLQELAARTKN 437 (745)
Q Consensus 364 ~~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~-~l~~~~~l~~la~~t~g 437 (745)
.++.+.+||+|+..+. +|++|.| ||. .|.++.|+.+++.+||+.+.+.+..+. ....+..+..++..+++
T Consensus 313 -~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 313 -ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred -hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 3578999999987543 7999999 996 799999999999999987766554322 22345567778888877
Q ss_pred CC
Q 004550 438 YS 439 (745)
Q Consensus 438 ~s 439 (745)
|.
T Consensus 389 yi 390 (852)
T TIGR03345 389 YI 390 (852)
T ss_pred cc
Confidence 65
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=2e-27 Score=283.96 Aligned_cols=449 Identities=16% Similarity=0.214 Sum_probs=268.6
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEE
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 286 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~ 286 (745)
.++. +-|.++++.+++ +.+.. +...+++|+||||||||++|+.+|..+. +..++.
T Consensus 171 ~~~~--~igr~~ei~~~~-~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDP--VIGRDEEIRRTI-QVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCc--CCCcHHHHHHHH-HHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 4555 888999887773 32222 2335789999999999999999998862 345566
Q ss_pred Eccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 287 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 287 v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
++...++ .+|.|+.++.++.+|+.+.... .++||||||+|.|++.+.... . ....+.|... -
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~-------~~~ILfIDEih~l~~~g~~~~--~---~d~~~~Lk~~----l 298 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSE-------GQIILFIDELHTLVGAGKAEG--A---MDAGNMLKPA----L 298 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcC-------CCeEEEeccHHHhhcCCCCcc--h---hHHHHHhchh----h
Confidence 6666665 4788999999999999886532 257999999999986543221 1 1122333222 3
Q ss_pred CCCcEEEEEEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCC-CCcccHHHHHHHcCCC
Q 004550 365 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 438 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 438 (745)
.++.+.+||+|+..+ .+|+++.| ||. .|.++.|+.+++..||+....++.....+ ..+..+..++..++.|
T Consensus 299 ~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 457899999999874 37999999 997 58999999999999999887776643332 2444566777777766
Q ss_pred CHH-----HHHHHHHHHHHHHHHh-------------hccc-----cCCCCCCc--------------------------
Q 004550 439 SGA-----ELEGVAKSAVSFALNR-------------QLSM-----DDLTKPVD-------------------------- 469 (745)
Q Consensus 439 sg~-----dl~~l~~~A~~~a~~r-------------~~~~-----~~~~~~~~-------------------------- 469 (745)
... .--.++.+|+..+--. .+.. .......+
T Consensus 376 i~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEE 455 (852)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 1222334333221100 0000 00000000
Q ss_pred -------------------------------------------------------------------ccCceeehhhHHH
Q 004550 470 -------------------------------------------------------------------EESIKVTMDDFLH 482 (745)
Q Consensus 470 -------------------------------------------------------------------~~~~~it~~df~~ 482 (745)
.....++.+|+..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~ 535 (852)
T TIGR03346 456 QWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAE 535 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHH
Confidence 0001133333333
Q ss_pred HHHhh--hccccccccccc------cccccceeeccCchhhHHHHHHHHHHHHH---hcCCCCceeeeeccCCCCChhHH
Q 004550 483 ALYEI--VPAFGASTDDLE------RSRLNGMVDCGDRHKHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTAL 551 (745)
Q Consensus 483 al~~~--~ps~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ll~GppGtGKT~l 551 (745)
++... .|.......+.. +.....+++ ...+++.+...+.... ..+.+|...+||+||||||||++
T Consensus 536 v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 536 VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHH
Confidence 33322 111110000000 000001111 1222333333332222 13345677899999999999999
Q ss_pred HHHHHhhC---CCCeEEEeccccc--------cccchhh-HHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchH
Q 004550 552 AATAGIDS---DFPFVKIISAESM--------IGLHEST-KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSN 619 (745)
Q Consensus 552 a~~lA~~~---~~~~i~v~~~~~l--------~g~~~~~-~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~ 619 (745)
|+++|..+ +.+++.+++++.. +|...+- .......+....++.+.+||+|||||++. .
T Consensus 612 A~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~----------~ 681 (852)
T TIGR03346 612 AKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH----------P 681 (852)
T ss_pred HHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC----------H
Confidence 99999765 5688888776531 2211100 00011234445566788999999999975 4
Q ss_pred HHHHHHHHHHhcCC---C-----CCCcEEEEEecCCCCC-C-C----------------------ccccccccceEEEcC
Q 004550 620 IISQTMLVLLKRLP---P-----KGKKLLVIGTTSEVSF-L-D----------------------SVGICDAFSVTYHVP 667 (745)
Q Consensus 620 ~~~~~Ll~~l~~~~---~-----~~~~v~vI~ttn~~~~-l-~----------------------~~~l~~rf~~~i~~p 667 (745)
.+++.|+..|+.-. . ..++.+||+|||.... + + ...+..|++.++.|.
T Consensus 682 ~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~ 761 (852)
T TIGR03346 682 DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH 761 (852)
T ss_pred HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC
Confidence 45666666664321 1 1246788899997321 0 0 013458999999999
Q ss_pred CCCHHHHHHHHHHc--------------cCCCHHHHHHHHHHCC--CCcHHHHHHHHHHHHc
Q 004550 668 TLKTDDAKKVLKQL--------------NVFAEEDVDSASEALN--DMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 668 ~~~~~~~~~Il~~~--------------~~~~~~d~~~~~~~~~--~~~ir~ll~~l~~a~~ 713 (745)
|++.+++.+|+... -.++++.+..++.... .+++|.|...++....
T Consensus 762 PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 762 PLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence 99999999998852 1244555555666533 7899999998877654
No 48
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-29 Score=264.42 Aligned_cols=232 Identities=19% Similarity=0.225 Sum_probs=183.1
Q ss_pred cccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHH
Q 004550 502 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKC 581 (745)
Q Consensus 502 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~ 581 (745)
...|..+.+..++++++-++. ++.+.+.+.+.|+++||.||||||||++|+++|.+.+.||....+++ +--.+.+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkd-P~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGA 382 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKD-PTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGA 382 (752)
T ss_pred cccChHHHHHHHHHHHHHhcC-cHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccH
Confidence 344444444445555544432 45566778899999999999999999999999999999999998776 3223333445
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC-cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccc-cc
Q 004550 582 AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DA 659 (745)
Q Consensus 582 ~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~-~r 659 (745)
..+|++|..|++.+||||||||||++...|...+ .+.+..++.||.+|++.. .+..|+|||+||.|+.||++.+| +|
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-qNeGiIvigATNfpe~LD~AL~RPGR 461 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-QNEGIIVIGATNFPEALDKALTRPGR 461 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC-cCCceEEEeccCChhhhhHHhcCCCc
Confidence 5899999999999999999999999987775443 367888889999999984 45689999999999999999988 99
Q ss_pred cceEEEcCCCCHHHHHHHHHHcc--CC--CHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHH
Q 004550 660 FSVTYHVPTLKTDDAKKVLKQLN--VF--AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHF 735 (745)
Q Consensus 660 f~~~i~~p~~~~~~~~~Il~~~~--~~--~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~ 735 (745)
||+++.+|.|+..-+.+||+.+- .. .+-|..-+..-..+.+..+|.+++..|+..|.. ++.+.|+++|+
T Consensus 462 FD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~-------dga~~VtM~~L 534 (752)
T KOG0734|consen 462 FDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV-------DGAEMVTMKHL 534 (752)
T ss_pred cceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh-------cCcccccHHHH
Confidence 99999999999999999999742 22 233444444555588999999999888887644 57788999999
Q ss_pred HHHHHHHh
Q 004550 736 YDCLQDMV 743 (745)
Q Consensus 736 ~~al~~~~ 743 (745)
+.|-+.++
T Consensus 535 E~akDrIl 542 (752)
T KOG0734|consen 535 EFAKDRIL 542 (752)
T ss_pred hhhhhhee
Confidence 98877653
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=1.3e-26 Score=275.61 Aligned_cols=189 Identities=17% Similarity=0.299 Sum_probs=132.1
Q ss_pred CcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcE
Q 004550 215 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPK 285 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~ 285 (745)
-.++. +-|.++++.+++ +.+.. ....+++|+||||||||++|+.+|..+. +..++
T Consensus 175 ~~l~~--vigr~~ei~~~i-~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 175 GKLDP--VIGRDEEIRRTI-QVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred CCCCc--CCCCHHHHHHHH-HHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 34566 899999877663 22222 2234799999999999999999999872 34556
Q ss_pred EEccchhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc
Q 004550 286 IVNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 363 (745)
Q Consensus 286 ~v~~~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 363 (745)
.++...++ .+|.|+.++.++.+|+.+.... .++||||||+|.|.+.+.+. ++ .....+ |...
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~-------~~~ILfIDEih~l~~~~~~~-~~-~d~~~~---lkp~---- 302 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQE-------GNVILFIDELHTMVGAGKAD-GA-MDAGNM---LKPA---- 302 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcC-------CCeEEEEecHHHhccCCCCc-cc-hhHHHH---hcch----
Confidence 66667666 4688999999999999875431 26799999999998665432 11 112222 2222
Q ss_pred cCCCcEEEEEEeCCCCC-----CChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCC-CcccHHHHHHHcCC
Q 004550 364 ESLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLA-PDVNLQELAARTKN 437 (745)
Q Consensus 364 ~~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~-~~~~l~~la~~t~g 437 (745)
-.++.+.+||+|+..+. +|+++.| ||. .|.++.|+.+++..||+....++..+..+. .+..+...+..++.
T Consensus 303 l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 303 LARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 24578999999999774 7999999 997 588999999999999998776654332222 23334444444444
Q ss_pred C
Q 004550 438 Y 438 (745)
Q Consensus 438 ~ 438 (745)
|
T Consensus 380 y 380 (857)
T PRK10865 380 Y 380 (857)
T ss_pred c
Confidence 3
No 50
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-27 Score=269.73 Aligned_cols=445 Identities=18% Similarity=0.240 Sum_probs=275.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 284 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~ 284 (745)
+-.++- +.|-++++.+.+ +.+..+ ...+-+|.|+||+|||.++.-+|..+- +..+
T Consensus 166 ~gklDP--vIGRd~EI~r~i-qIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 166 EGKLDP--VIGRDEEIRRTI-QILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred cCCCCC--CcChHHHHHHHH-HHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 344555 899999998884 333322 223568899999999999999998762 2233
Q ss_pred EEEccchhhh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC
Q 004550 285 KIVNGPEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 362 (745)
Q Consensus 285 ~~v~~~~l~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~ 362 (745)
+.++...+.. +|.|+.|++++.+.++..... +.||||||+|.+........+ ......++...|..
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~--------~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLAR--- 297 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK--------NVILFIDEIHTIVGAGATEGG-AMDAANLLKPALAR--- 297 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCC--------CeEEEEechhhhcCCCccccc-ccchhhhhHHHHhc---
Confidence 4445444443 899999999999999998764 459999999999876554321 23344455555544
Q ss_pred ccCCCcEEEEEEeCCCCC-----CChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCC-CCCcccHHHHHHHcC
Q 004550 363 VESLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF-LAPDVNLQELAARTK 436 (745)
Q Consensus 363 ~~~~~~v~vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~-l~~~~~l~~la~~t~ 436 (745)
+.+.+||+|+.-+. -|+||-| ||. .|.+..|+.++-..||+..-.++..++. ...|..+...+..++
T Consensus 298 ----GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 298 ----GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred ----CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHH
Confidence 78999999976543 3999999 998 6899999999999999987766654433 223444555555444
Q ss_pred CCCH-----HHHHHHHHHHHHHH-HHhh---------------------------------cc----c--cCCCCC-Ccc
Q 004550 437 NYSG-----AELEGVAKSAVSFA-LNRQ---------------------------------LS----M--DDLTKP-VDE 470 (745)
Q Consensus 437 g~sg-----~dl~~l~~~A~~~a-~~r~---------------------------------~~----~--~~~~~~-~~~ 470 (745)
-|-. .---.++.+|+... +... +. . ..+... ...
T Consensus 371 RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~ 450 (786)
T COG0542 371 RYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKEL 450 (786)
T ss_pred hhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3321 11112222222211 1100 00 0 000000 000
Q ss_pred cCceeehhhHHHHHHhh--hccccccccccccc------cccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeecc
Q 004550 471 ESIKVTMDDFLHALYEI--VPAFGASTDDLERS------RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEG 542 (745)
Q Consensus 471 ~~~~it~~df~~al~~~--~ps~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~G 542 (745)
.. .|+.+++..++..+ .|.......+.... ....+++....+ ..+....+........+.+|..++||.|
T Consensus 451 ~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV-~avs~aIrraRaGL~dp~rPigsFlF~G 528 (786)
T COG0542 451 EA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAV-EAVSDAIRRARAGLGDPNRPIGSFLFLG 528 (786)
T ss_pred hh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHH-HHHHHHHHHHhcCCCCCCCCceEEEeeC
Confidence 01 26667777776655 23321111111110 011112222111 1222223333444566778889999999
Q ss_pred CCCCChhHHHHHHHhhCC---CCeEEEeccccc---------------cccchhhHHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 543 PSGSGKTALAATAGIDSD---FPFVKIISAESM---------------IGLHESTKCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 543 ppGtGKT~la~~lA~~~~---~~~i~v~~~~~l---------------~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
|+|+|||.+|+++|..+. -.+++++++|.+ +||.++. .+-+..++.|+|||+||||
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG------~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG------QLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc------chhHhhhcCCCeEEEechh
Confidence 999999999999998875 789999988863 5555542 4556677889999999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcC---CCC-----CCcEEEEEecCCCCC------CC------------------
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRL---PPK-----GKKLLVIGTTSEVSF------LD------------------ 652 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~---~~~-----~~~v~vI~ttn~~~~------l~------------------ 652 (745)
|+.+ ..+++.|+..|+.- ... .++.+||.|||--.. .+
T Consensus 603 EKAH----------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~ 672 (786)
T COG0542 603 EKAH----------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELK 672 (786)
T ss_pred hhcC----------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHH
Confidence 9986 33555555555542 122 246789999985321 00
Q ss_pred ---ccccccccceEEEcCCCCHHHHHHHHHHc-------------c-CCCHHHHHHHHHHCC--CCcHHHHHHHHHHH
Q 004550 653 ---SVGICDAFSVTYHVPTLKTDDAKKVLKQL-------------N-VFAEEDVDSASEALN--DMPIKKLYMLIEMA 711 (745)
Q Consensus 653 ---~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------~-~~~~~d~~~~~~~~~--~~~ir~ll~~l~~a 711 (745)
+..+.+|+|.+|.|.+++.+++.+|++.. . .++++-...++...- ..+.|-|...++.-
T Consensus 673 ~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 673 KHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred hhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 00234899999999999999999999852 1 233443444444433 66777776666543
No 51
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=237.12 Aligned_cols=217 Identities=18% Similarity=0.291 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHHH---HhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHH
Q 004550 514 KHIYQRAMLLVEQV---KVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFED 590 (745)
Q Consensus 514 ~~~~~~~~~~~~~~---~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~ 590 (745)
++....+....+.+ ...+.=-|+++|||||||||||++|+++|++.+.||+.++.++ ++|.+.|.....|+++|++
T Consensus 127 EeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~-liGehVGdgar~Ihely~r 205 (368)
T COG1223 127 EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE-LIGEHVGDGARRIHELYER 205 (368)
T ss_pred HHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH-HHHHHhhhHHHHHHHHHHH
Confidence 34444444444433 3445567899999999999999999999999999999998887 8899999999999999999
Q ss_pred HhcCCCeEEEEeccchhhhcCC---CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcC
Q 004550 591 AYKSPLSIIILDDIERLLEYVP---IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 667 (745)
Q Consensus 591 a~~~~~~il~lDEid~l~~~~~---~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p 667 (745)
|++.+|||+||||+|+++-.+. .-+ .-..+.++||+.|+++. .+..|+.||+||++++||+ .+|+||...|+|.
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRG-DVsEiVNALLTelDgi~-eneGVvtIaaTN~p~~LD~-aiRsRFEeEIEF~ 282 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRG-DVSEIVNALLTELDGIK-ENEGVVTIAATNRPELLDP-AIRSRFEEEIEFK 282 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcc-cHHHHHHHHHHhccCcc-cCCceEEEeecCChhhcCH-HHHhhhhheeeee
Confidence 9999999999999999874331 111 13567889999999995 6778999999999999999 6789999999999
Q ss_pred CCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHH-HHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 668 TLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYM-LIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 668 ~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~-~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
.|+.+|+..|++.+ ..-.+.+...+.....+.+.|++.. ++..|-..| +.++++.|+.+|++.|+++
T Consensus 283 LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~A-------i~ed~e~v~~edie~al~k 354 (368)
T COG1223 283 LPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRA-------IAEDREKVEREDIEKALKK 354 (368)
T ss_pred CCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHH-------HHhchhhhhHHHHHHHHHh
Confidence 99999999999974 3344555667777777777776654 334444333 4467788999999999985
No 52
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-28 Score=234.29 Aligned_cols=241 Identities=17% Similarity=0.217 Sum_probs=196.5
Q ss_pred ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccc
Q 004550 495 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIG 574 (745)
Q Consensus 495 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g 574 (745)
.+++.....+|+.-.+..+.+.++......+.++..+..||.++|||||||||||++|+++|+.....||++++++ ++-
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgse-fvq 227 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE-FVQ 227 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH-HHH
Confidence 3455556677777777777778888888888889999999999999999999999999999999999999999988 556
Q ss_pred cchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcC-CCCCcchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCC
Q 004550 575 LHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFL 651 (745)
Q Consensus 575 ~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l 651 (745)
+|-++.-..++.+|.-|+..+|+||||||||+++..+ +........++..|+++|+++. ....+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 6666666689999999999999999999999998765 2222234556666666666553 345688999999999999
Q ss_pred Cccccc-cccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccC
Q 004550 652 DSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSG 726 (745)
Q Consensus 652 ~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~ 726 (745)
||+.|+ +|.|+.|+||.|+..+.+-++.. .....+.|++.++.+-...+..++-.+++.|...+-. ..
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr-------~n 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR-------EN 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH-------hc
Confidence 999998 99999999999998888777775 3455667888888888888888888899888777633 45
Q ss_pred CCCccHhHHHHHHHHHh
Q 004550 727 REKIKISHFYDCLQDMV 743 (745)
Q Consensus 727 ~~~I~~~~~~~al~~~~ 743 (745)
+-.|...||++|....+
T Consensus 381 ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ceeeeHHHHHHHHHhhc
Confidence 56789999999998664
No 53
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5e-28 Score=247.76 Aligned_cols=258 Identities=15% Similarity=0.175 Sum_probs=193.7
Q ss_pred hHHHHHHhhhccccccccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhh
Q 004550 479 DFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID 558 (745)
Q Consensus 479 df~~al~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~ 558 (745)
++.++++.- .-...+.+.|..+-|+.+.+..+++.+-..+.+++-+ ...++|++++|++||||||||++||++|.+
T Consensus 193 ~Lve~lerd---Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 193 DLVEALERD---ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HHHHHHHHH---HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 555555432 2223456778888888888887888877777777665 446789999999999999999999999999
Q ss_pred CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC--cchHHHHHHHHHHHhcCCCCC
Q 004550 559 SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP--RFSNIISQTMLVLLKRLPPKG 636 (745)
Q Consensus 559 ~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~--~~~~~~~~~Ll~~l~~~~~~~ 636 (745)
++-.|..|. +..+.+++-|++++-+|-+|+-|+..+|++|||||||+|...++... ..|.++...||..|+++....
T Consensus 269 c~tTFFNVS-sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~ 347 (491)
T KOG0738|consen 269 CGTTFFNVS-SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL 347 (491)
T ss_pred hcCeEEEec-hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc
Confidence 999999984 45588899999999999999999999999999999999998886543 247889999999999986544
Q ss_pred C---cEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHH
Q 004550 637 K---KLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIE 709 (745)
Q Consensus 637 ~---~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~ 709 (745)
. .|+|+|+||-|+.+|. .+++||...|++|.|+.+.+..+++.. ....+-.+..+.....+++..++.+++.
T Consensus 348 e~~k~VmVLAATN~PWdiDE-AlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 348 ENSKVVMVLAATNFPWDIDE-ALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred ccceeEEEEeccCCCcchHH-HHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 3 4999999999999999 567999999999999999999888863 1222333444444444555555555554
Q ss_pred HHHccccCCch-----hh---cccCC--CCccHhHHHHHHHHH
Q 004550 710 MAAQGEQGGAA-----EA---IYSGR--EKIKISHFYDCLQDM 742 (745)
Q Consensus 710 ~a~~~~~~~~~-----~~---~~~~~--~~I~~~~~~~al~~~ 742 (745)
.|...+..+-. ++ .+.+. .-|+.+||++|+..+
T Consensus 427 eAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 427 EASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 44433221100 00 01122 348999999999865
No 54
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.3e-28 Score=232.32 Aligned_cols=233 Identities=18% Similarity=0.212 Sum_probs=191.1
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHH
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCA 582 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~ 582 (745)
.+|+...-..+.++++.+..+++.+...+...|.++|||||||||||.+|+++|....+.|+++.+++ ++-.+.++...
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse-lvqk~igegsr 227 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE-LVQKYIGEGSR 227 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH-HHHHHhhhhHH
Confidence 44554444456667777777888899999999999999999999999999999999999999998877 56667777777
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhhcCCCC-CcchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCCCccccc-c
Q 004550 583 QIVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-D 658 (745)
Q Consensus 583 ~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g-~~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l~~~~l~-~ 658 (745)
.++++|--|+..+|+|||.||||++...+..+ ......++.+++++++++. +..+++-||.+||+.|.+|++.|+ +
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg 307 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 307 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC
Confidence 89999999999999999999999998766433 2345678888888887764 345688999999999999999998 9
Q ss_pred ccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhH
Q 004550 659 AFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISH 734 (745)
Q Consensus 659 rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~ 734 (745)
|.|+.|+||+|+.+.+.+||+- .+..-+.++..+.....+.+..++-.++-.|...+- .+.+-.+|.+|
T Consensus 308 ridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~al-------rerrvhvtqed 380 (404)
T KOG0728|consen 308 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYAL-------RERRVHVTQED 380 (404)
T ss_pred cccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHH-------HHhhccccHHH
Confidence 9999999999999999999984 344455677788888887777788777777766552 23557799999
Q ss_pred HHHHHHHHh
Q 004550 735 FYDCLQDMV 743 (745)
Q Consensus 735 ~~~al~~~~ 743 (745)
|+-|+.+++
T Consensus 381 femav~kvm 389 (404)
T KOG0728|consen 381 FEMAVAKVM 389 (404)
T ss_pred HHHHHHHHH
Confidence 999998876
No 55
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.94 E-value=4.6e-26 Score=248.07 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=191.3
Q ss_pred ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccc
Q 004550 495 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIG 574 (745)
Q Consensus 495 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g 574 (745)
.+++.|..++|+......+.+.+.+.....+.+...+..++.++|||||||||||++|+++|.+++.+|+.+.+++ +..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~-l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE-FVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH-HHH
Confidence 3455667778887777777777777777777888888899999999999999999999999999999999997665 444
Q ss_pred cchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC-C---cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC
Q 004550 575 LHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG-P---RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF 650 (745)
Q Consensus 575 ~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g-~---~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~ 650 (745)
.+.++....++++|..|+...|+||||||||.+...+..+ . +....++..|+..+++.. ...+++||+|||+++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~-~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD-QTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-CCCCEEEEEecCCchh
Confidence 5555666789999999999999999999999998655211 1 112233444555555543 2347899999999999
Q ss_pred CCccccc-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhccc
Q 004550 651 LDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYS 725 (745)
Q Consensus 651 l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~ 725 (745)
+|++.++ +||+..|+||+|+.+++..|++.. ....+.++..++....+.+.+++..++..|...+-. .
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r-------~ 369 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVR-------K 369 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------c
Confidence 9999887 799999999999999999999864 233455778888888899999999999999877633 4
Q ss_pred CCCCccHhHHHHHHHHHh
Q 004550 726 GREKIKISHFYDCLQDMV 743 (745)
Q Consensus 726 ~~~~I~~~~~~~al~~~~ 743 (745)
++..|+.+||.+|+..++
T Consensus 370 ~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 370 NRYVILPKDFEKGYKTVV 387 (398)
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 667899999999999875
No 56
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-27 Score=227.87 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCC
Q 004550 517 YQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPL 596 (745)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~ 596 (745)
+-..+.+.+.+...+..||.++|+|||||||||.+|++.|...+..|+++-+|. ++-.+.+...+.+|..|.-|+...|
T Consensus 187 iVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ-LVQMfIGdGAkLVRDAFaLAKEkaP 265 (424)
T KOG0652|consen 187 IVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ-LVQMFIGDGAKLVRDAFALAKEKAP 265 (424)
T ss_pred hccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH-HHhhhhcchHHHHHHHHHHhhccCC
Confidence 334456678889999999999999999999999999999999999999998887 5566666777789999999999999
Q ss_pred eEEEEeccchhhhcCCCCC-cchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHH
Q 004550 597 SIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTD 672 (745)
Q Consensus 597 ~il~lDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~ 672 (745)
+||||||+|.+...+-... .....++.+++++|+++. ....++-||++||+.+.+||+.+| +|.|+.|+||.|+.+
T Consensus 266 ~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~ 345 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 345 (424)
T ss_pred eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChH
Confidence 9999999999976552221 224567777777777764 345689999999999999999988 899999999999999
Q ss_pred HHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 673 DAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 673 ~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.+..|++-. ....+-...++.......+..++..++-.|...+- ..+...|+++||++++.++.
T Consensus 346 aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL-------Rr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 346 ARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL-------RRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred HHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH-------hcccccccHHHHHHHHHHHH
Confidence 999999852 33344455677777777777777777666655542 34667899999999988764
No 57
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=225.71 Aligned_cols=239 Identities=20% Similarity=0.222 Sum_probs=185.6
Q ss_pred ccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccc
Q 004550 497 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLH 576 (745)
Q Consensus 497 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~ 576 (745)
++.....+|-.+.-+.+.++++......+.+...+..||.++|||||||||||.+|+++|+..+.-||++.+++ ++-+|
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse-lvqky 251 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE-LVQKY 251 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH-HHHHH
Confidence 33333444444444456667777778888999999999999999999999999999999999999999999988 66677
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcC-CCCCcchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCCCc
Q 004550 577 ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDS 653 (745)
Q Consensus 577 ~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l~~ 653 (745)
.++....++++|+-|+....|||||||||++.+.+ +.|....|.++.+++++++++. ..+.++-|+.+||+|+.||+
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldp 331 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 331 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCH
Confidence 88888899999999999999999999999998655 3344456899999998887764 33557889999999999999
Q ss_pred cccc-cccceEEEcCCCCHHHHHHHHHHcc--CCCHHHH-HHHHHHCC-CCcHHHHHHHHHHHHccccCCchhhcccCCC
Q 004550 654 VGIC-DAFSVTYHVPTLKTDDAKKVLKQLN--VFAEEDV-DSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGRE 728 (745)
Q Consensus 654 ~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~--~~~~~d~-~~~~~~~~-~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~ 728 (745)
+.++ +|.|+.++|..|+.+-+..|++-.. ...+.|+ -+++.+++ +....++..++-.|...+ +...+.
T Consensus 332 allrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa-------irarrk 404 (435)
T KOG0729|consen 332 ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA-------IRARRK 404 (435)
T ss_pred hhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH-------HHHHhh
Confidence 9998 9999999999999999999887431 2233444 23455555 444455555555554443 122446
Q ss_pred CccHhHHHHHHHHHh
Q 004550 729 KIKISHFYDCLQDMV 743 (745)
Q Consensus 729 ~I~~~~~~~al~~~~ 743 (745)
..|+.||++|+++++
T Consensus 405 ~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVV 419 (435)
T ss_pred hhhHHHHHHHHHHHH
Confidence 689999999999886
No 58
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-26 Score=254.15 Aligned_cols=229 Identities=18% Similarity=0.198 Sum_probs=182.4
Q ss_pred cceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHH
Q 004550 504 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQ 583 (745)
Q Consensus 504 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~ 583 (745)
-|..+.+..+.+++.-+ +..+++...+.+.|+++||+||||||||.+|||+|.+++.||+.+.+++.+ -...+.....
T Consensus 314 AG~deAK~El~E~V~fL-KNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv-E~~~g~~asr 391 (774)
T KOG0731|consen 314 AGVDEAKEELMEFVKFL-KNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV-EMFVGVGASR 391 (774)
T ss_pred cCcHHHHHHHHHHHHHh-cCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH-HHhcccchHH
Confidence 34444444444444333 335677888999999999999999999999999999999999999888743 2222222457
Q ss_pred HHHHHHHHhcCCCeEEEEeccchhhhcCC---C-CC-cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccc-
Q 004550 584 IVKVFEDAYKSPLSIIILDDIERLLEYVP---I-GP-RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC- 657 (745)
Q Consensus 584 i~~~f~~a~~~~~~il~lDEid~l~~~~~---~-g~-~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~- 657 (745)
++.+|..|++..|||||+||||.+...+. . |+ .-....++.|+..||+.... ..|+|+|+||+++.+|++.+|
T Consensus 392 vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 392 VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccccCHHhcCC
Confidence 99999999999999999999999998773 1 22 22346788889999998544 789999999999999999998
Q ss_pred cccceEEEcCCCCHHHHHHHHHHcc---C--CCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccH
Q 004550 658 DAFSVTYHVPTLKTDDAKKVLKQLN---V--FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKI 732 (745)
Q Consensus 658 ~rf~~~i~~p~~~~~~~~~Il~~~~---~--~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~ 732 (745)
+|||+.++++.|+...+.+|++... . -.+.++.++.....+.+..+|.+++..|+..+.. ++...|+.
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r-------~~~~~i~~ 543 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR-------KGLREIGT 543 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH-------hccCccch
Confidence 9999999999999999999998631 1 2455677766666688999999999988887743 57788999
Q ss_pred hHHHHHHHHH
Q 004550 733 SHFYDCLQDM 742 (745)
Q Consensus 733 ~~~~~al~~~ 742 (745)
.||++|++.+
T Consensus 544 ~~~~~a~~Rv 553 (774)
T KOG0731|consen 544 KDLEYAIERV 553 (774)
T ss_pred hhHHHHHHHH
Confidence 9999999854
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=6.7e-25 Score=240.43 Aligned_cols=238 Identities=17% Similarity=0.260 Sum_probs=185.1
Q ss_pred ccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccc
Q 004550 497 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLH 576 (745)
Q Consensus 497 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~ 576 (745)
.+.|..+.|+......+.+.+.......+.+...+..++.++|||||||||||++|+++|.+++.+|+.+.+++ +...+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~-l~~~~ 205 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE-LVQKF 205 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH-HhHhh
Confidence 34455566666666666666666666677778888899999999999999999999999999999999997776 44455
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCc-chHHHHHHHHHH---HhcCCCCCCcEEEEEecCCCCCCC
Q 004550 577 ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPR-FSNIISQTMLVL---LKRLPPKGKKLLVIGTTSEVSFLD 652 (745)
Q Consensus 577 ~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~-~~~~~~~~Ll~~---l~~~~~~~~~v~vI~ttn~~~~l~ 652 (745)
.++....++.+|..|+...|+||||||||.+...+..+.. ....+.+.+..+ +++.. ...++.||+|||+++.+|
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~-~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD-PRGNVKIIAATNRIDILD 284 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC-CCCCEEEEEecCChhhCC
Confidence 5566678999999999999999999999999876543221 123344444444 44432 335799999999999999
Q ss_pred ccccc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCC
Q 004550 653 SVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGR 727 (745)
Q Consensus 653 ~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~ 727 (745)
++.++ +||+..++||+|+.+++.+||+... ...+.++..++....+...+++..++..|...+-. ++.
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~-------~~~ 357 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR-------DDR 357 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------cCC
Confidence 98887 7999999999999999999999742 22235677777777788888998999888876632 355
Q ss_pred CCccHhHHHHHHHHHh
Q 004550 728 EKIKISHFYDCLQDMV 743 (745)
Q Consensus 728 ~~I~~~~~~~al~~~~ 743 (745)
..|+.+||.+|++.+.
T Consensus 358 ~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 358 TEVTMEDFLKAIEKVM 373 (389)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 7799999999999874
No 60
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.5e-26 Score=223.28 Aligned_cols=207 Identities=21% Similarity=0.289 Sum_probs=172.8
Q ss_pred hccccccccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEe
Q 004550 488 VPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 567 (745)
Q Consensus 488 ~ps~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~ 567 (745)
..+.-...+.+.|....|+...++.+.+.+-....+.+. -..+++|.+++||||||||||+.+|+++|.+.+..|.++.
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPql-FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQL-FTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhh-hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 344445667888998888888877777666666555543 4667889999999999999999999999999999999996
Q ss_pred ccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC-cchHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 004550 568 SAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 646 (745)
Q Consensus 568 ~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn 646 (745)
+++ +++.+-+++++.++++|+-|+...|+||||||||.+.+.+..+. ..++++...||..|.++......|+|+|+||
T Consensus 199 SSD-LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 199 SSD-LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred hHH-HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 554 78888888899999999999999999999999999988776543 3567899999999999988888999999999
Q ss_pred CCCCCCccccccccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHCC
Q 004550 647 EVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALN 697 (745)
Q Consensus 647 ~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~d~~~~~~~~~ 697 (745)
-|+.||. .+|+||+.+|++|.|....+...++-. ...++.|..++.....
T Consensus 278 iPw~LDs-AIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTe 332 (439)
T KOG0739|consen 278 IPWVLDS-AIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTE 332 (439)
T ss_pred CchhHHH-HHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcC
Confidence 9999999 678999999999999988888877752 2456677777766655
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.93 E-value=5e-25 Score=241.16 Aligned_cols=234 Identities=17% Similarity=0.195 Sum_probs=180.3
Q ss_pred ccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhH
Q 004550 501 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTK 580 (745)
Q Consensus 501 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~ 580 (745)
..+.|+......+.+.+.......+.+...+..++.++|||||||||||++|+++|.+++.+|+.+.+++ +++.+.++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se-L~~k~~Ge~ 261 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE-LIQKYLGDG 261 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch-hhhhhcchH
Confidence 3345555444445555555555556667778889999999999999999999999999999999997765 555566666
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC-CcchHHHHHH---HHHHHhcCCCCCCcEEEEEecCCCCCCCcccc
Q 004550 581 CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG-PRFSNIISQT---MLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 656 (745)
Q Consensus 581 ~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g-~~~~~~~~~~---Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l 656 (745)
...++++|..|+...|+||||||||.+...+... ......+.+. |+..+++.. ...++.||+|||+++.+|++.+
T Consensus 262 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-~~~~V~VI~ATNr~d~LDpaLl 340 (438)
T PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-SRGDVKVIMATNRIESLDPALI 340 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-ccCCeEEEEecCChHHhhHHhc
Confidence 7789999999999999999999999998655321 1112233333 444455442 2347899999999999999888
Q ss_pred c-cccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCcc
Q 004550 657 C-DAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIK 731 (745)
Q Consensus 657 ~-~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~ 731 (745)
+ +||+..|+||+|+.+++.+||+.. ....+.++..++....+.+.+++..++..|+..|.. .++..|+
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr-------~~r~~Vt 413 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR-------ERRMKVT 413 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-------hcCCccC
Confidence 7 899999999999999999999964 223345677888888888888888899888877643 4677899
Q ss_pred HhHHHHHHHHHh
Q 004550 732 ISHFYDCLQDMV 743 (745)
Q Consensus 732 ~~~~~~al~~~~ 743 (745)
.+||.+|+..+.
T Consensus 414 ~~D~~~A~~~v~ 425 (438)
T PTZ00361 414 QADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 62
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.4e-26 Score=224.29 Aligned_cols=233 Identities=18% Similarity=0.204 Sum_probs=174.5
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHH
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCA 582 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~ 582 (745)
++|+...-+.+.+.++....+.+.+...+.+||.+++|||+||||||.+|+++|+.....|+++.+++ ++-.+.++.-.
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse-LiQkylGdGpk 265 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE-LIQKYLGDGPK 265 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH-HHHHHhccchH
Confidence 44444433334444445556677888899999999999999999999999999999999999999888 44555556666
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhhcC-CCCCcchHHHHHHHHHHHhcCC--CCCCcEEEEEecCCCCCCCccccc-c
Q 004550 583 QIVKVFEDAYKSPLSIIILDDIERLLEYV-PIGPRFSNIISQTMLVLLKRLP--PKGKKLLVIGTTSEVSFLDSVGIC-D 658 (745)
Q Consensus 583 ~i~~~f~~a~~~~~~il~lDEid~l~~~~-~~g~~~~~~~~~~Ll~~l~~~~--~~~~~v~vI~ttn~~~~l~~~~l~-~ 658 (745)
.+|++|.-|...+|+|+||||||++...+ +..++.-..++++++++|+++. ..+..|-||.+||+.+.|||+.+| +
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPG 345 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPG 345 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCC
Confidence 89999999999999999999999997655 2223334678888888888775 345689999999999999999988 9
Q ss_pred ccceEEEcCCCCHHHHHHHHHHc-c---CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhH
Q 004550 659 AFSVTYHVPTLKTDDAKKVLKQL-N---VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISH 734 (745)
Q Consensus 659 rf~~~i~~p~~~~~~~~~Il~~~-~---~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~ 734 (745)
|.|+.|+||.|+....+.|++-. . ...+-.++.++..-...+..++-.++-.|...|- ..-+.+++.+|
T Consensus 346 rIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl-------RerRm~vt~~D 418 (440)
T KOG0726|consen 346 RIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL-------RERRMKVTMED 418 (440)
T ss_pred ccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH-------HHHHhhccHHH
Confidence 99999999999999999998841 1 1122233444444333444444444544544432 23446799999
Q ss_pred HHHHHHHHh
Q 004550 735 FYDCLQDMV 743 (745)
Q Consensus 735 ~~~al~~~~ 743 (745)
|.+|...++
T Consensus 419 F~ka~e~V~ 427 (440)
T KOG0726|consen 419 FKKAKEKVL 427 (440)
T ss_pred HHHHHHHHH
Confidence 999998775
No 63
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.8e-25 Score=226.59 Aligned_cols=245 Identities=19% Similarity=0.250 Sum_probs=186.1
Q ss_pred ccccccccccceeeccCchhhHHHHHHHHHHHHH-hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccccc
Q 004550 495 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVK-VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMI 573 (745)
Q Consensus 495 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~ 573 (745)
.-.+.|..++|+......+.+.+-...+.++.+. ..-.+|+.++|||||||||||++|+++|++++.+|+.+..+. +.
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~-lt 164 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN-LT 164 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc-cc
Confidence 3456677788888887777777777777777774 334578999999999999999999999999999999996665 66
Q ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCc-chHHHHHHHHHHHhcCCCCC-CcEEEEEecCCCCCC
Q 004550 574 GLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPR-FSNIISQTMLVLLKRLPPKG-KKLLVIGTTSEVSFL 651 (745)
Q Consensus 574 g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~-~~~~~~~~Ll~~l~~~~~~~-~~v~vI~ttn~~~~l 651 (745)
+++.++..+.++.+|.-|.+-.|+||||||+|.++..|..+++ ....+-..++.+-+++.... .+|+|+||||+|..+
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 6777888899999999999999999999999999988855543 34556777888888886544 479999999999999
Q ss_pred CccccccccceEEEcCCCCHHHHHHHHHHc-------------------cCCCHHHHHHHHHHCCCCcHHHHHHHH----
Q 004550 652 DSVGICDAFSVTYHVPTLKTDDAKKVLKQL-------------------NVFAEEDVDSASEALNDMPIKKLYMLI---- 708 (745)
Q Consensus 652 ~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-------------------~~~~~~d~~~~~~~~~~~~ir~ll~~l---- 708 (745)
|.+.+ +|++.+++++.|+.+++.+||+-. .++++.|+.++|...+..++|+++..=
T Consensus 245 DeAii-RR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~ 323 (386)
T KOG0737|consen 245 DEAII-RRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLL 323 (386)
T ss_pred HHHHH-HhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccch
Confidence 99655 899999999999999999999852 366777777777776666677666541
Q ss_pred HHHHccccCCchhhcccC--CCCccHhHHHHHHHH
Q 004550 709 EMAAQGEQGGAAEAIYSG--REKIKISHFYDCLQD 741 (745)
Q Consensus 709 ~~a~~~~~~~~~~~~~~~--~~~I~~~~~~~al~~ 741 (745)
+.-+..++....++.+.+ ...++++||.+|.+.
T Consensus 324 d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~ 358 (386)
T KOG0737|consen 324 DLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINR 358 (386)
T ss_pred hhhhhhhhccCCcccccccccCcccHHHHHHHHHh
Confidence 000000100001111112 356899999999873
No 64
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.92 E-value=3.3e-24 Score=237.53 Aligned_cols=241 Identities=16% Similarity=0.237 Sum_probs=181.2
Q ss_pred cccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC----------eEE
Q 004550 496 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP----------FVK 565 (745)
Q Consensus 496 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~----------~i~ 565 (745)
+++.|..+.|+......+.+.+.....+.+.+...+..++.++|||||||||||++|+++|++++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 3445556666666655666666666667778888889999999999999999999999999987554 556
Q ss_pred EeccccccccchhhHHHHHHHHHHHHhcC----CCeEEEEeccchhhhcCCCC--CcchHHHHHHHHHHHhcCCCCCCcE
Q 004550 566 IISAESMIGLHESTKCAQIVKVFEDAYKS----PLSIIILDDIERLLEYVPIG--PRFSNIISQTMLVLLKRLPPKGKKL 639 (745)
Q Consensus 566 v~~~~~l~g~~~~~~~~~i~~~f~~a~~~----~~~il~lDEid~l~~~~~~g--~~~~~~~~~~Ll~~l~~~~~~~~~v 639 (745)
+..++ +++.+.++++..++.+|+.|+.. .|+||||||+|.++..++.+ ....+.++..|+..|+++.. ..++
T Consensus 257 v~~~e-Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~-~~~V 334 (512)
T TIGR03689 257 IKGPE-LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES-LDNV 334 (512)
T ss_pred ccchh-hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-CCce
Confidence 65555 55566777788899999988753 68999999999999776543 22345677888899988754 3579
Q ss_pred EEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc--------------CCCHHHHHHHHHHC--------
Q 004550 640 LVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN--------------VFAEEDVDSASEAL-------- 696 (745)
Q Consensus 640 ~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~--------------~~~~~d~~~~~~~~-------- 696 (745)
+||||||+++.+|++.+| +|||..|+||+|+.+++.+|++..- +....++..+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~ 414 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATS 414 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887 8999999999999999999998741 23344444444432
Q ss_pred ---------------------CCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 697 ---------------------NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 697 ---------------------~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
...+...+.++++.|...+-. +.+..+...|+.+|+.+|+.+
T Consensus 415 ~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~---~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 415 EENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIK---DHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred cccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHH---HHHhcCCcCcCHHHHHHHHHH
Confidence 035567778888888766532 122234467999999999885
No 65
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=5.5e-24 Score=241.29 Aligned_cols=235 Identities=17% Similarity=0.244 Sum_probs=177.6
Q ss_pred ccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchh
Q 004550 499 ERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHES 578 (745)
Q Consensus 499 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~ 578 (745)
.+..+.|+...+..+.++... ....+.+...+..++.++||+||||||||++|+++|.+.+.+|+.+.+++ +...+.+
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~-~~~~~~g 130 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD-FVEMFVG 130 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH-HHHHHhc
Confidence 333444444444444444333 22334455567788899999999999999999999999999999997665 4444445
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCC----CcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc
Q 004550 579 TKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIG----PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV 654 (745)
Q Consensus 579 ~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g----~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~ 654 (745)
...+.++++|+.|+...|+||||||||.+...+..+ ......+++.|+..|+++.. ..+++||||||+++.+|++
T Consensus 131 ~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 131 VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNRPDVLDPA 209 (495)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCChhhcCHH
Confidence 566789999999999999999999999998766432 11234566677788877643 4579999999999999998
Q ss_pred ccc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCC
Q 004550 655 GIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREK 729 (745)
Q Consensus 655 ~l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~ 729 (745)
.++ +||+..+++|+|+.+++.+|++... ...+.++..+.....+.+.+++.+++..|+..+.. .+...
T Consensus 210 l~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~-------~~~~~ 282 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR-------KNKTE 282 (495)
T ss_pred HhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-------cCCCC
Confidence 887 7999999999999999999999742 22455777788887788888888888877654422 34567
Q ss_pred ccHhHHHHHHHHHh
Q 004550 730 IKISHFYDCLQDMV 743 (745)
Q Consensus 730 I~~~~~~~al~~~~ 743 (745)
|+.+||.+|++.+.
T Consensus 283 i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 283 ITMNDIEEAIDRVI 296 (495)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998763
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.91 E-value=7.9e-24 Score=219.95 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=140.0
Q ss_pred cCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhc-----CCCeEEEEecc
Q 004550 530 SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDI 604 (745)
Q Consensus 530 ~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-----~~~~il~lDEi 604 (745)
.+.++|.+++||||||||||++|+++|.+++.+|+.+..++ +.+.+.+++++.++++|..|+. ..|||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~e-L~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE-LESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH-hhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 56789999999999999999999999999999999998887 6777888888999999999864 57999999999
Q ss_pred chhhhcCCCCC-cchHHH-HHHHHHHHhcCC-----------CCCCcEEEEEecCCCCCCCccccc-cccceEEEcCCCC
Q 004550 605 ERLLEYVPIGP-RFSNII-SQTMLVLLKRLP-----------PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLK 670 (745)
Q Consensus 605 d~l~~~~~~g~-~~~~~~-~~~Ll~~l~~~~-----------~~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~ 670 (745)
|.+++.++.+. ...+.+ ..+|+.+++++. ....+|+||+|||+++.||++.+| +|||..+ +.|+
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd 299 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPT 299 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCC
Confidence 99998775332 233444 478889888631 335689999999999999999888 8999865 5789
Q ss_pred HHHHHHHHHHc---cCCCHHHHHHHHHHCCCCc
Q 004550 671 TDDAKKVLKQL---NVFAEEDVDSASEALNDMP 700 (745)
Q Consensus 671 ~~~~~~Il~~~---~~~~~~d~~~~~~~~~~~~ 700 (745)
.+++.+||+.. ...+..|+.+++..+.+-+
T Consensus 300 ~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 300 REDRIGVVHGIFRDDGVSREDVVKLVDTFPGQP 332 (413)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCC
Confidence 99999999963 4566788999888887443
No 67
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=238.30 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=171.0
Q ss_pred HHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccc
Q 004550 526 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIE 605 (745)
Q Consensus 526 ~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid 605 (745)
.+...+..-|+++||+||||||||++|+++|.+.+.||..+.+++ ++-.+.+-....+|.+|..|++..||||||||||
T Consensus 174 ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~-FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiD 252 (596)
T COG0465 174 KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD-FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEID 252 (596)
T ss_pred hhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh-hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhh
Confidence 444556688999999999999999999999999999999997776 4444444445579999999999999999999999
Q ss_pred hhhhcCCCC--Ccch--HHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHH
Q 004550 606 RLLEYVPIG--PRFS--NIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ 680 (745)
Q Consensus 606 ~l~~~~~~g--~~~~--~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~ 680 (745)
++...+..| ++-. +..++.|+.+||+.. .+..|+||++||+++.+|++.+| +|||+.+.++.|+...+++|++-
T Consensus 253 AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 253 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKV 331 (596)
T ss_pred hcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHH
Confidence 999887543 2222 346778888999885 45689999999999999999999 99999999999999999999993
Q ss_pred c----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 681 L----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 681 ~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
. ....+-++..+.....+....++.+++-.|+..+.. .....|++.||.+|.+.++
T Consensus 332 H~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar-------~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 332 HAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAAR-------RNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHH-------hcCeeEeccchHHHHHHHh
Confidence 2 223345666677777788888899998887776633 4667899999999999875
No 68
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.91 E-value=1.2e-23 Score=251.79 Aligned_cols=202 Identities=18% Similarity=0.124 Sum_probs=159.9
Q ss_pred hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccccccc-------------c-------------------
Q 004550 529 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL-------------H------------------- 576 (745)
Q Consensus 529 ~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~-------------~------------------- 576 (745)
+.+..+++|+||+||||||||.+|+++|.+++.||+.+.+++.+-++ +
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 45668899999999999999999999999999999999877754211 1
Q ss_pred ----------hhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchH-HHHHHHHHHHhcCC--CCCCcEEEEE
Q 004550 577 ----------ESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSN-IISQTMLVLLKRLP--PKGKKLLVIG 643 (745)
Q Consensus 577 ----------~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~-~~~~~Ll~~l~~~~--~~~~~v~vI~ 643 (745)
++.....++.+|+.|++.+||||||||||.+... .++ ..+..|+..|++.. ...++|+|||
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~------ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN------ESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC------ccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 1112234899999999999999999999999643 122 23677888888653 2356899999
Q ss_pred ecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHH---ccCC-C---HHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 644 TTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQ---LNVF-A---EEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 644 ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~---~~~~-~---~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
|||+|+.+||+.+| ||||+.|+++.|+..++++++.. ..++ . ..++..++..+.+.+.++|.+++..|+..+
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998 89999999999997777776653 2111 1 235777888888999999999999998877
Q ss_pred cCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 716 QGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 716 ~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
-. .+...|+.+++..|+...+
T Consensus 1858 ir-------q~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1858 IT-------QKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HH-------cCCCccCHHHHHHHHHHHH
Confidence 43 5678899999999998653
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.90 E-value=3.2e-23 Score=237.34 Aligned_cols=233 Identities=17% Similarity=0.241 Sum_probs=174.8
Q ss_pred cccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhh
Q 004550 500 RSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHEST 579 (745)
Q Consensus 500 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~ 579 (745)
+....|+...+..+.++...+ ...+.+...+..++.++||+||||||||++|+++|.+++.||+.+.+++ +...+.+.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~l-k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~-f~~~~~g~ 259 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFL-KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE-FVEMFVGV 259 (638)
T ss_pred HHhccChHHHHHHHHHHHHHH-hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHH-HHHHhhhh
Confidence 344455555544444444332 2233445556778899999999999999999999999999999997665 33334444
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC----cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccc
Q 004550 580 KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP----RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVG 655 (745)
Q Consensus 580 ~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~----~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~ 655 (745)
....++.+|..|+...||||||||||.+...++.+. ......+..|+..+++.. ...+++||+|||+++.+|++.
T Consensus 260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-~~~~ViVIaaTN~~~~LD~AL 338 (638)
T CHL00176 260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-GNKGVIVIAATNRVDILDAAL 338 (638)
T ss_pred hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-CCCCeeEEEecCchHhhhhhh
Confidence 556799999999999999999999999986654321 122345555666666653 345799999999999999988
Q ss_pred cc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCc
Q 004550 656 IC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKI 730 (745)
Q Consensus 656 l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I 730 (745)
++ +||+..+.|++|+.+++.+||+... ...+.++..+.....+.+.++|.+++..|+..+.. .+...|
T Consensus 339 lRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r-------~~~~~I 411 (638)
T CHL00176 339 LRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTAR-------RKKATI 411 (638)
T ss_pred hccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------hCCCCc
Confidence 87 8999999999999999999999742 23345666666666678999999999888765422 355779
Q ss_pred cHhHHHHHHHHH
Q 004550 731 KISHFYDCLQDM 742 (745)
Q Consensus 731 ~~~~~~~al~~~ 742 (745)
+.+||.+|++.+
T Consensus 412 t~~dl~~Ai~rv 423 (638)
T CHL00176 412 TMKEIDTAIDRV 423 (638)
T ss_pred CHHHHHHHHHHH
Confidence 999999999876
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.90 E-value=8.1e-23 Score=223.22 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=174.4
Q ss_pred cccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhh
Q 004550 500 RSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHEST 579 (745)
Q Consensus 500 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~ 579 (745)
+..+.|+......+.+.+.......+.+...+..++.++||+||||||||++|+++|..++.+|+.+.+++ +...+.++
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~-l~~~~~g~ 199 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE-LVRKYIGE 199 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH-HHHHhhhH
Confidence 34445555544444444444445555666778889999999999999999999999999999999987655 44455556
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC-cchHHHHHHH---HHHHhcCCCCCCcEEEEEecCCCCCCCccc
Q 004550 580 KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTM---LVLLKRLPPKGKKLLVIGTTSEVSFLDSVG 655 (745)
Q Consensus 580 ~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~-~~~~~~~~~L---l~~l~~~~~~~~~v~vI~ttn~~~~l~~~~ 655 (745)
....++.+|..|+...|+||||||+|.+...+.... .....+.+.+ +..+++.. ...++.||+|||+++.+|++.
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vI~ttn~~~~ld~al 278 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD-PRGNVKVIAATNRPDILDPAL 278 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC-CCCCEEEEEecCChhhCChhh
Confidence 666789999999988999999999999976543211 1122333334 34444442 234789999999999999987
Q ss_pred cc-cccceEEEcCCCCHHHHHHHHHHcc----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCc
Q 004550 656 IC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKI 730 (745)
Q Consensus 656 l~-~rf~~~i~~p~~~~~~~~~Il~~~~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I 730 (745)
++ +||+..++||+|+.+++.+|++... ...+.++..+.....+.+.+++..++..|...+-. ++...|
T Consensus 279 ~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~-------~~~~~i 351 (364)
T TIGR01242 279 LRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR-------EERDYV 351 (364)
T ss_pred cCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------hCCCcc
Confidence 76 8999999999999999999998742 12224566777777788888888888888876632 466789
Q ss_pred cHhHHHHHHHHH
Q 004550 731 KISHFYDCLQDM 742 (745)
Q Consensus 731 ~~~~~~~al~~~ 742 (745)
+.+||.+|++.+
T Consensus 352 ~~~d~~~a~~~~ 363 (364)
T TIGR01242 352 TMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHh
Confidence 999999999876
No 71
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.9e-23 Score=208.66 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=170.7
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHH
Q 004550 512 RHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA 591 (745)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a 591 (745)
.+.+.++......+.+.+.+.+||.+++||||||+|||.+|+++|...+.+|+.+.+++ +++.+.+++...||+.|..|
T Consensus 143 elre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~-lv~kyiGEsaRlIRemf~yA 221 (388)
T KOG0651|consen 143 ELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA-LVDKYIGESARLIRDMFRYA 221 (388)
T ss_pred HHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh-hhhhhcccHHHHHHHHHHHH
Confidence 33344443344445566778899999999999999999999999999999999997666 77888888888999999999
Q ss_pred hcCCCeEEEEeccchhhhcCCCCCcc-hHHHHHHHHHHHhcCCC--CCCcEEEEEecCCCCCCCccccc-cccceEEEcC
Q 004550 592 YKSPLSIIILDDIERLLEYVPIGPRF-SNIISQTMLVLLKRLPP--KGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVP 667 (745)
Q Consensus 592 ~~~~~~il~lDEid~l~~~~~~g~~~-~~~~~~~Ll~~l~~~~~--~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p 667 (745)
+...|||||+||||++.+++-.-... ...++.+|+++++++.. ...+|-+|+|||+|+.||++.+| +|.++.++.|
T Consensus 222 ~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iP 301 (388)
T KOG0651|consen 222 REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIP 301 (388)
T ss_pred hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccC
Confidence 99999999999999998766332222 34677888888887743 35689999999999999999999 9999999999
Q ss_pred CCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 668 TLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 668 ~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
.|+...+..|++-- ..+-.-+-..++.-..+.+..++.+++..|...+.. ..+..+-+|+|+.++++.
T Consensus 302 lpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~-------~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 302 LPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP-------EERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred CcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc-------hhhHHHhHHHHHHHHHHH
Confidence 99988888887742 111112222333333455666677777777655532 456678899999998864
No 72
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-22 Score=229.70 Aligned_cols=245 Identities=20% Similarity=0.229 Sum_probs=195.5
Q ss_pred cccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCC-----CCeEEEeccc
Q 004550 496 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAE 570 (745)
Q Consensus 496 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~-----~~~i~v~~~~ 570 (745)
..+.+...+|+..+...+++++-.+..+.+.+.....+||.++||+||||||||++|+++|..+. ..|..-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 34556777888888888889998999999999999999999999999999999999999997652 3333333444
Q ss_pred cccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCC-CCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 004550 571 SMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI-GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS 649 (745)
Q Consensus 571 ~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~-g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~ 649 (745)
..+++.++.+.+++-+|+.|++..|+|||+||||.|++.+.. -......+..+|+.+|++++ .+..|+||||||+++
T Consensus 340 -~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-sRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 340 -CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-SRGQVVVIGATNRPD 417 (1080)
T ss_pred -hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-CCCceEEEcccCCcc
Confidence 467788888889999999999999999999999999988743 33446789999999999995 456899999999999
Q ss_pred CCCccccc-cccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchh--
Q 004550 650 FLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAE-- 721 (745)
Q Consensus 650 ~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~-- 721 (745)
.+|++..| +||++.++||.|+.+++.+|+.-. ......-+..+.....++..+++..++..|+..+-.+...
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 99997766 999999999999999999999853 2344455566667777888888888888888765433211
Q ss_pred -------hcccCCCCccHhHHHHHHHHH
Q 004550 722 -------AIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 722 -------~~~~~~~~I~~~~~~~al~~~ 742 (745)
.+......|...||..|+...
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i 525 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRI 525 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhcc
Confidence 111223348888999888754
No 73
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.8e-23 Score=215.69 Aligned_cols=236 Identities=19% Similarity=0.248 Sum_probs=177.8
Q ss_pred eeeccCchhhHHHHHHH----HHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCe-EEEeccccccccchhhH
Q 004550 506 MVDCGDRHKHIYQRAML----LVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPF-VKIISAESMIGLHESTK 580 (745)
Q Consensus 506 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~-i~v~~~~~l~g~~~~~~ 580 (745)
+-+.+..+.+++...-. -++.+.+.+...-+++|||||||||||.+||.+...++..- --+++|+ ++.+|.+++
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe-IL~KYVGeS 301 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE-ILNKYVGES 301 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH-HHHHhhccc
Confidence 33344445555443321 23455677888899999999999999999999998876532 3356777 556788888
Q ss_pred HHHHHHHHHHHhc--------CCCeEEEEeccchhhhcCCC---CCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC
Q 004550 581 CAQIVKVFEDAYK--------SPLSIIILDDIERLLEYVPI---GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS 649 (745)
Q Consensus 581 ~~~i~~~f~~a~~--------~~~~il~lDEid~l~~~~~~---g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~ 649 (745)
++++|++|.+|.. +...||+|||||++...|++ +..+.+.+.+.||.-|+++ +...+++|||.||++|
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV-eqLNNILVIGMTNR~D 380 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV-EQLNNILVIGMTNRKD 380 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH-HhhhcEEEEeccCchh
Confidence 8899999999842 46679999999999988754 2457788999999999998 5567999999999999
Q ss_pred CCCccccc-cccceEEEcCCCCHHHHHHHHHHc-------c-CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCch
Q 004550 650 FLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL-------N-VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAA 720 (745)
Q Consensus 650 ~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~-------~-~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~ 720 (745)
++|.+.|| +||...+++..|++.-+.+|++-. + .-.+-|+.++.......+..++.-++..|...|-.+..
T Consensus 381 lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~v 460 (744)
T KOG0741|consen 381 LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHV 460 (744)
T ss_pred hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999998888888731 1 22345677777777778888887777776554432211
Q ss_pred --------hhcccCCCCccHhHHHHHHHHHh
Q 004550 721 --------EAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 721 --------~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.-...+.-+|+.+||..||.++-
T Consensus 461 k~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 461 KAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred ccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 01122345699999999999874
No 74
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=3.5e-21 Score=201.89 Aligned_cols=216 Identities=19% Similarity=0.266 Sum_probs=164.8
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCC---ceEEEEcCCCChHHHHHHHHHHHhc------CCCcEEEccchh
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV---KGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 292 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---~giLL~GppGtGKT~lar~la~~l~------~~~~~~v~~~~l 292 (745)
++|+++.+++| ++.+.. +..+.+.+++|+.++ .++||+||||||||++|+++|+.+. ..+++.++++++
T Consensus 25 l~Gl~~vK~~i-~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 25 LVGLAPVKTRI-REIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred cCCcHHHHHHH-HHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 99999999988 777655 334577788888654 3599999999999999999999863 234678899999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
.+.|.|+++.+.+.+|+.+.. .||||||+|.+++.++. ......++..|+..|+.. ..+++||
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g-----------gVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~--~~~~~vI 165 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG-----------GVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ--RDDLVVI 165 (287)
T ss_pred HHHHhccchHHHHHHHHHccC-----------CEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC--CCCEEEE
Confidence 999999998888888887753 39999999999754322 234577888899988743 3578888
Q ss_pred EEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH------cCCCC-H
Q 004550 373 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR------TKNYS-G 440 (745)
Q Consensus 373 ~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~------t~g~s-g 440 (745)
++++... .++|++++ ||+..|+|++|+.+++.+|++.++++.... +.++ ....+... ...|. +
T Consensus 166 ~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~--l~~~-~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQ--LTPE-AEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHhCCCCCCccH
Confidence 8886432 24699999 999999999999999999999998765421 3322 23333332 23445 8
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 004550 441 AELEGVAKSAVSFALNRQLSM 461 (745)
Q Consensus 441 ~dl~~l~~~A~~~a~~r~~~~ 461 (745)
+++.++++.|......|....
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998888887653
No 75
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.1e-22 Score=210.54 Aligned_cols=246 Identities=21% Similarity=0.247 Sum_probs=182.5
Q ss_pred ccccccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccc
Q 004550 495 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIG 574 (745)
Q Consensus 495 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g 574 (745)
...+.|..+.|+.+.+..+.+...++......+ ...+.+..++||+||||+|||++++++|.+++..|..+ ++..+.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F-~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i-SassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLF-LGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI-SASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhh-hccccccchhheecCCCCchHHHHHHHHhhhcceEeec-cHHHhhh
Confidence 345667777777777766666666665544444 33457788999999999999999999999999999998 5566889
Q ss_pred cchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC-cchHHHHHHHHHHHhcC-CCCCCcEEEEEecCCCCCCC
Q 004550 575 LHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP-RFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLD 652 (745)
Q Consensus 575 ~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~-~~~~~~~~~Ll~~l~~~-~~~~~~v~vI~ttn~~~~l~ 652 (745)
++.|+.+..++.+|.-|+...|+|+|+||||+++..+.... ..+.++...++...... .....+|+||||||+|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 99999999999999999999999999999999998873322 23444444444333343 33455999999999999999
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCc-----hh-
Q 004550 653 SVGICDAFSVTYHVPTLKTDDAKKVLKQL-----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGA-----AE- 721 (745)
Q Consensus 653 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~~-----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~-----~~- 721 (745)
.+.++ ||...+++|+|+.+.+..+++++ ..+.+.++..++....+.+.-++-.++.-|+....... .+
T Consensus 305 ea~~R-rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~ 383 (428)
T KOG0740|consen 305 EAARR-RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF 383 (428)
T ss_pred HHHHH-HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh
Confidence 98776 99999999999999998888874 35566677666666665555555666655554332110 00
Q ss_pred hcccCCCCccHhHHHHHHHHHh
Q 004550 722 AIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 722 ~~~~~~~~I~~~~~~~al~~~~ 743 (745)
...+....|+..||..+++.+.
T Consensus 384 ~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 384 IDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred cchhccCCCCcchHHHHHHhhc
Confidence 1134456689999999988654
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.86 E-value=3.2e-21 Score=223.71 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=165.0
Q ss_pred hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 004550 529 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 529 ~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~ 608 (745)
..+...+.++||+||||||||++|+++|.+++.+|+.+.+.+ +...+.+.....++++|..|+...||||||||||.+.
T Consensus 179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~-~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD-FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257 (644)
T ss_pred hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHH-hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhh
Confidence 344566788999999999999999999999999999997665 3333444455689999999999999999999999998
Q ss_pred hcCCCC----CcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccc-cccceEEEcCCCCHHHHHHHHHHcc-
Q 004550 609 EYVPIG----PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN- 682 (745)
Q Consensus 609 ~~~~~g----~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~-~rf~~~i~~p~~~~~~~~~Il~~~~- 682 (745)
..++.+ ....+.+++.|+..|++.. ....++||||||+++.+|++.++ +||++.++||.|+.+++.+|++...
T Consensus 258 ~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 258 RQRGAGLGGGHDEREQTLNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred hccCCCCCCCchHHHHHHHHHHHhhhccc-CCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 766532 1223456777777788763 34579999999999999999888 8999999999999999999999742
Q ss_pred ---CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 683 ---VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 683 ---~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
...+.++..+.....+.+.+++.+++..|+..+.. .+...|+.+||.+|++.+
T Consensus 337 ~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r-------~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 337 RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR-------GNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred cCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHH-------cCCCcccHHHHHHHHHHH
Confidence 23345666777777789999999999988876633 466789999999998755
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=9.4e-21 Score=198.85 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=174.1
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCC---CceEEEEcCCCChHHHHHHHHHHHhcC------CCcEEEccchh
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH---VKGMLLYGPPGTGKTLMARQIGKMLNG------MEPKIVNGPEV 292 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~---~~giLL~GppGtGKT~lar~la~~l~~------~~~~~v~~~~l 292 (745)
++|+++.++++ ++.... +..++...++|+++ ..++||+||||||||++|+++|+.+.. .+++.++++++
T Consensus 24 l~Gl~~vk~~i-~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 24 LIGLKPVKTRI-REIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred ccCHHHHHHHH-HHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 89999999988 666655 55677888889875 458999999999999999999988742 25777899999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
++.|.|+++.+++++|+.+.. ++|||||+|.+.+.++. ......+++.|+..|+. ...++++|
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~-----------gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~--~~~~~~vI 164 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG-----------GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMEN--QRDDLVVI 164 (284)
T ss_pred hHhhcccchHHHHHHHHHccC-----------cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 999999998889999988753 39999999999754322 23456788889998874 34678888
Q ss_pred EEeCCC--CC---CChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH-------cCCCCH
Q 004550 373 GMTNRK--DM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR-------TKNYSG 440 (745)
Q Consensus 373 ~~tn~~--~~---id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~-------t~g~sg 440 (745)
++++.. +. ++|++++ ||...|+||+++.+++.+|++.++++.... +. +..+..+... ..--++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~--l~-~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYR--FS-AEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccc--cC-HHHHHHHHHHHHHhCCCCCCChH
Confidence 887653 32 4899999 999999999999999999999998875421 22 2234444443 222358
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHH
Q 004550 441 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLH 482 (745)
Q Consensus 441 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~ 482 (745)
+++.++++.|......|....... .....+-..++.+|+..
T Consensus 240 R~lrn~ve~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFCDLDR-VLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCC-CCCHHHHhCCCHHHHhh
Confidence 999999999998888876543211 11112334455666543
No 78
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3e-21 Score=193.82 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=165.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhc--------CCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCC
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSD 323 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~la~~l~--------~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~ 323 (745)
+...+=||||||||||||+|++++|+.+. ...++.+|+..+++||++++.+.+.++|+...+..... ..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~---~~ 250 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR---GN 250 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC---Cc
Confidence 34567799999999999999999999883 22456799999999999999999999999988775442 23
Q ss_pred eEEEEEccchhhhhcCCCCCCCCc--chhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCC
Q 004550 324 LHVIIFDEIDAICKSRGSTRDGTG--VHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPD 401 (745)
Q Consensus 324 p~Il~iDEid~l~~~~~~~~~~~~--~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd 401 (745)
.-.++|||+++|+..|.+..++++ ..-+++|.+|++||.++...|+++++|+|-.+.||.|+.. |-|...++++|+
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt 328 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPT 328 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCcc
Confidence 457789999999988755444333 4558999999999999999999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHccccccCCCCCcc--------------cHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhhccccCCCC
Q 004550 402 ENGRLQILQIHTNKMKENSFLAPDV--------------NLQELAAR-TKNYSGAELEGVAKSAVSFALNRQLSMDDLTK 466 (745)
Q Consensus 402 ~~~r~~Il~~~~~~~~~~~~l~~~~--------------~l~~la~~-t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~ 466 (745)
...+.+|++.++..+-..+.+.... ....++.. +.|.+|+-|+.+=--|...-
T Consensus 329 ~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y------------ 396 (423)
T KOG0744|consen 329 AEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY------------ 396 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc------------
Confidence 9999999999887664333222111 11222222 47888888766533332211
Q ss_pred CCcccCceeehhhHHHHHHhh
Q 004550 467 PVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 467 ~~~~~~~~it~~df~~al~~~ 487 (745)
.+...++.++|..++.+.
T Consensus 397 ---~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 397 ---FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred ---cCCCccChHHHHHHHHHH
Confidence 233578899998887653
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=3.5e-20 Score=193.13 Aligned_cols=215 Identities=19% Similarity=0.270 Sum_probs=156.6
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCC---CCceEEEEcCCCChHHHHHHHHHHHhc------CCCcEEEccchh
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIK---HVKGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 292 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~---~~~giLL~GppGtGKT~lar~la~~l~------~~~~~~v~~~~l 292 (745)
+.||++.++++ ++.+..+... ....+.|.. .+.++||+||||||||++|+++|+.+. ...++.++++++
T Consensus 8 ~~Gl~~vk~~i-~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 8 MVGLDEVKALI-KEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred hcChHHHHHHH-HHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 89999999888 6666554333 233345654 345799999999999999999998762 235667889999
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
.++|+|+++..++++|+.+.. +||||||+|.|....+ .......++.|+..|+.. ..++++|
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~-----------~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~--~~~~~vi 147 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALG-----------GVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN--RNEFVLI 147 (261)
T ss_pred hhhhccchHHHHHHHHHhccC-----------CEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc--CCCEEEE
Confidence 999999999999999987742 3999999999963211 123466788888888754 3566777
Q ss_pred EEeCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH---------cCCC
Q 004550 373 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR---------TKNY 438 (745)
Q Consensus 373 ~~tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~---------t~g~ 438 (745)
++++..+ .++|++++ ||...+.+|.++.+++.+|++.+++.... .+.+ ..+..++.. ...-
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~--~l~~-~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY--KLTE-EAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC--ccCH-HHHHHHHHHHHHHHhccCCCCc
Confidence 6654432 26899998 99989999999999999999988875431 1322 234444322 1234
Q ss_pred CHHHHHHHHHHHHHHHHHhhccc
Q 004550 439 SGAELEGVAKSAVSFALNRQLSM 461 (745)
Q Consensus 439 sg~dl~~l~~~A~~~a~~r~~~~ 461 (745)
+++.+.++++.|......|.+..
T Consensus 223 n~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888999999888887776643
No 80
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-19 Score=186.34 Aligned_cols=188 Identities=30% Similarity=0.472 Sum_probs=144.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
+-++||||||||||||+.||.+|... +..+.++.|.++.- .-.+....+.++|+.+...... -+|||||.|
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rG-------LllFIDEAD 453 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRG-------LLLFIDEAD 453 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccc-------eEEEehhhH
Confidence 44689999999999999999999986 67777777766532 2224556899999999876543 499999999
Q ss_pred hhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHH
Q 004550 334 AICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 413 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 413 (745)
+++..|...-- ++..+..+|.||-... +...+++++.+||+|..+|.++-. |++..|+||+|.+++|..+|..++
T Consensus 454 AFLceRnktym-SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742|consen 454 AFLCERNKTYM-SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred HHHHHhchhhh-cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHH
Confidence 99988866432 3567778888875533 455689999999999999999988 999999999999999999999998
Q ss_pred ccccccCC--------------------C---CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004550 414 NKMKENSF--------------------L---APDVNLQELAARTKNYSGAELEGVAKSAVSFAL 455 (745)
Q Consensus 414 ~~~~~~~~--------------------l---~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 455 (745)
.++-.... + ..+..+.+.|..|+||||++|..|+-.....+.
T Consensus 529 nkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 529 NKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred HHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 76521100 0 011235678999999999999988776444333
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.1e-19 Score=168.89 Aligned_cols=131 Identities=37% Similarity=0.649 Sum_probs=115.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhh
Q 004550 258 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK 337 (745)
Q Consensus 258 iLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~ 337 (745)
|||+||||||||++|+.+|+.+ +.+++.++++++.+.+.+++++.++.+|..+.... .|+||||||+|.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------KPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------TSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc-------cceeeeeccchhccc
Confidence 6999999999999999999998 57788999999999999999999999999987764 267999999999998
Q ss_pred cCCCCCCCCcchhHHHHHHHHhccCccCC-CcEEEEEEeCCCCCCChhhhCCCCccceEEecC
Q 004550 338 SRGSTRDGTGVHDSIVNQLLTKIDGVESL-NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 399 (745)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~LL~~~d~~~~~-~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~ 399 (745)
+.+ .........++++|+..++..... .++++|++||.++.++++++| +||+..|++|+
T Consensus 73 ~~~--~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 73 KSQ--PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HCS--TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccc--cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 872 223466788999999999987765 569999999999999999998 89999999874
No 82
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-18 Score=184.86 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=146.1
Q ss_pred CcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh
Q 004550 215 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 294 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 294 (745)
-+|+.+ .==.+.+++| .+=+...+...+.+++.|.+..+|.|||||||||||+++.|+|+.| ...++.++.++.
T Consensus 198 stF~Tl--aMd~~~K~~I-~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v-- 271 (457)
T KOG0743|consen 198 STFETL--AMDPDLKERI-IDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEV-- 271 (457)
T ss_pred CCcccc--ccChhHHHHH-HHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccc--
Confidence 677762 2112223334 3444455667899999999999999999999999999999999999 466666665543
Q ss_pred hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC---CCc--chhHHHHHHHHhccCccCCC--
Q 004550 295 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD---GTG--VHDSIVNQLLTKIDGVESLN-- 367 (745)
Q Consensus 295 ~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~---~~~--~~~~~~~~LL~~~d~~~~~~-- 367 (745)
+.... ++.++...... +||+|++||.-+.-++.... ... ...-.+..||+.+||+-+..
T Consensus 272 ---~~n~d-Lr~LL~~t~~k----------SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ 337 (457)
T KOG0743|consen 272 ---KLDSD-LRHLLLATPNK----------SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD 337 (457)
T ss_pred ---cCcHH-HHHHHHhCCCC----------cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC
Confidence 22233 78888776654 39999999976543322211 001 12245778999999998776
Q ss_pred cEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC--CCHHHHH
Q 004550 368 NVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN--YSGAELE 444 (745)
Q Consensus 368 ~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g--~sg~dl~ 444 (745)
.-++|.|||.++.|||||+||||+|.+|+++.-+.+.-..+++.++.--. +..-+.++.+..++ .++||+.
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHH
Confidence 68999999999999999999999999999999999999999988875311 12223344443333 5888874
No 83
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.3e-18 Score=181.21 Aligned_cols=176 Identities=23% Similarity=0.358 Sum_probs=139.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcC----CCeEEEEeccchhh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS----PLSIIILDDIERLL 608 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~----~~~il~lDEid~l~ 608 (745)
....+++||||||||||++|+.+|...+.+|..++... ...+.++++++.|++. ...|||+|||+++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf- 116 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF- 116 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-
Confidence 55688999999999999999999999999999986543 2445799999999543 3479999999996
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCCccccccccceEEEcCCCCHHHHHHHHHHc-----
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS--FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----- 681 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~--~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----- 681 (745)
+...++.||..++. ..+++||||++.. .+.++ +++| ++++.|.+++.+++.+++++.
T Consensus 117 ---------nK~QQD~lLp~vE~-----G~iilIGATTENPsF~ln~A-LlSR-~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 117 ---------NKAQQDALLPHVEN-----GTIILIGATTENPSFELNPA-LLSR-ARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred ---------ChhhhhhhhhhhcC-----CeEEEEeccCCCCCeeecHH-Hhhh-hheeeeecCCHHHHHHHHHHHHhhhh
Confidence 46677888887754 4788888886544 34554 4444 779999999999999999981
Q ss_pred cC------CCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 682 NV------FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 682 ~~------~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
.+ ..++++...+...+.||.|.+++.+|++...++. + +.++.+.+.+++++-
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~--------~-~~~~~~~l~~~l~~~ 238 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEP--------D-EVLILELLEEILQRR 238 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCC--------C-cccCHHHHHHHHhhh
Confidence 12 2467888899999999999999999999998854 1 245588888888753
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=7e-19 Score=163.43 Aligned_cols=130 Identities=28% Similarity=0.449 Sum_probs=112.2
Q ss_pred eeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCC-CeEEEEeccchhhhcC-CCCC
Q 004550 538 CLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSP-LSIIILDDIERLLEYV-PIGP 615 (745)
Q Consensus 538 ~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~-~~il~lDEid~l~~~~-~~g~ 615 (745)
+||+||||||||++|+.+|+.++.+++.+++++.. +.+.....+.+.++|..+.+.. |+||||||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-cccccccccccccccccccccccceeeeeccchhcccccccccc
Confidence 68999999999999999999999999999888754 6677778889999999998887 9999999999999876 2344
Q ss_pred cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCC
Q 004550 616 RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 668 (745)
Q Consensus 616 ~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~ 668 (745)
.....+.+.|+..++......++++||+|||.++.+++..+++||+..+++|.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55678899999999998776678999999999999999544499999999983
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=3.1e-18 Score=167.79 Aligned_cols=192 Identities=19% Similarity=0.270 Sum_probs=132.7
Q ss_pred cceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHH
Q 004550 504 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQ 583 (745)
Q Consensus 504 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~ 583 (745)
..+.++-. +++++..+..+.+..+. ...+..|+|||||||+|||++|+.+|++++.+|..+.++.. ++...
T Consensus 21 ~~L~efiG-Q~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i-------~k~~d 91 (233)
T PF05496_consen 21 KSLDEFIG-QEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI-------EKAGD 91 (233)
T ss_dssp SSCCCS-S--HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---------SCHH
T ss_pred CCHHHccC-cHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh-------hhHHH
Confidence 34445444 45667666666655432 33567899999999999999999999999999988766531 12234
Q ss_pred HHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC-----CC----------CCcEEEEEecCCC
Q 004550 584 IVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----PK----------GKKLLVIGTTSEV 648 (745)
Q Consensus 584 i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~~----------~~~v~vI~ttn~~ 648 (745)
+..++.... ...|||||||+++ +..+++.|+..|+... .. ..+..+||||++.
T Consensus 92 l~~il~~l~--~~~ILFIDEIHRl----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~ 159 (233)
T PF05496_consen 92 LAAILTNLK--EGDILFIDEIHRL----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA 159 (233)
T ss_dssp HHHHHHT----TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred HHHHHHhcC--CCcEEEEechhhc----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence 566665543 3579999999997 4778888998888631 11 1256789999999
Q ss_pred CCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 649 SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 649 ~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
.++.. .|++||....++..|+.+|+.+|+++. +.-.+++....+...+.|+.|-+..+++++..-++.
T Consensus 160 g~ls~-pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD~a~v 231 (233)
T PF05496_consen 160 GLLSS-PLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRDFAQV 231 (233)
T ss_dssp CCTSH-CCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCCCCCC
T ss_pred cccch-hHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 88877 788999999999999999999999974 455577888888889999999999999999877643
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=1.7e-17 Score=162.69 Aligned_cols=190 Identities=22% Similarity=0.355 Sum_probs=120.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 293 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 293 (745)
+-+|++ +.|+++.++.+ +-++...... -.+..++|||||||+||||||+.+|+++ +..+...+++.+-
T Consensus 20 P~~L~e--fiGQ~~l~~~l-~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 20 PKSLDE--FIGQEHLKGNL-KILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANEL-GVNFKITSGPAIE 87 (233)
T ss_dssp -SSCCC--S-S-HHHHHHH-HHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHC-T--EEEEECCC--
T ss_pred CCCHHH--ccCcHHHHhhh-HHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhcc-CCCeEeccchhhh
Confidence 457888 99999998887 3333221111 1234579999999999999999999999 5677777776431
Q ss_pred hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------
Q 004550 294 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------- 364 (745)
Q Consensus 294 ~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~--------- 364 (745)
+ ...+..++..... ..||||||||.+.+ .+...|+..|+...
T Consensus 88 -k-----~~dl~~il~~l~~----------~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 88 -K-----AGDLAAILTNLKE----------GDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp -S-----CHHHHHHHHT--T----------T-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSS
T ss_pred -h-----HHHHHHHHHhcCC----------CcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEecccc
Confidence 1 1233444444332 24999999999853 23445666665321
Q ss_pred -------CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC
Q 004550 365 -------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 437 (745)
Q Consensus 365 -------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g 437 (745)
...++.+||+|++...+.+.|+. ||.....+..++.++..+|++...+.+... .++....++|..+.|
T Consensus 139 ~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRG 213 (233)
T ss_dssp S-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTT
T ss_pred ccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCC
Confidence 12458999999999999999998 999988999999999999999776655422 234457789999987
Q ss_pred CCHHHHHHHHHHH
Q 004550 438 YSGAELEGVAKSA 450 (745)
Q Consensus 438 ~sg~dl~~l~~~A 450 (745)
+++-..++++.+
T Consensus 214 -tPRiAnrll~rv 225 (233)
T PF05496_consen 214 -TPRIANRLLRRV 225 (233)
T ss_dssp -SHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHH
Confidence 666666666554
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=4.6e-17 Score=169.66 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=135.9
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHh--cCCCCceeeeeccCCCCChhHHHHHHHhhC-------CCCeEEEecccccc
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKV--SKGSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESMI 573 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ll~GppGtGKT~la~~lA~~~-------~~~~i~v~~~~~l~ 573 (745)
+.|+..++..+.++..+.......... .......++||+||||||||++|+++|..+ ..+++.+.+++ ++
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-l~ 86 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-LV 86 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH-hh
Confidence 456666666666666666443222111 112345789999999999999999999752 34677765554 67
Q ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC---
Q 004550 574 GLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF--- 650 (745)
Q Consensus 574 g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~--- 650 (745)
|.+.++....++++|+.|. .+||||||+|.|... ..+.+....+..|+..|+.. ...+++|+++...++
T Consensus 87 ~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--GEKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--CccchHHHHHHHHHHHHhcc---CCCEEEEecCCcchhHHH
Confidence 7777777778889998875 379999999999631 12234455667777776653 345555555443221
Q ss_pred --CCccccccccceEEEcCCCCHHHHHHHHHHc----cC-CCHHHHHHHHH---------HCCCCcHHHHHHHHHHHHcc
Q 004550 651 --LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NV-FAEEDVDSASE---------ALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 651 --l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~-~~~~d~~~~~~---------~~~~~~ir~ll~~l~~a~~~ 714 (745)
+++ .+++||...++||+|+.+++.+|+++. .. ++++.+..+.. ....++.|.+.++++.|...
T Consensus 159 ~~~~p-~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 159 LSLNP-GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HhcCh-HHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 344 677999999999999999999999974 22 33333332221 12279999999999997654
Q ss_pred c
Q 004550 715 E 715 (745)
Q Consensus 715 ~ 715 (745)
.
T Consensus 238 ~ 238 (261)
T TIGR02881 238 Q 238 (261)
T ss_pred H
Confidence 4
No 88
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=2.2e-17 Score=173.39 Aligned_cols=226 Identities=13% Similarity=0.149 Sum_probs=146.7
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHhcC---CCCceeeeeccCCCCChhHHHHHHHhhC-------CCCeEEEeccccc
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKVSK---GSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESM 572 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~GppGtGKT~la~~lA~~~-------~~~~i~v~~~~~l 572 (745)
+.|+.+++..+.++..+.. ..+.....+ ..+..++||+||||||||++|+++|... ..+|+.+.+++ +
T Consensus 24 l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~-l 101 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD-L 101 (284)
T ss_pred ccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH-H
Confidence 4567777766666666532 222222222 2355689999999999999999988654 23688887654 4
Q ss_pred cccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC--CC
Q 004550 573 IGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--SF 650 (745)
Q Consensus 573 ~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~--~~ 650 (745)
++.+.+.+...++++|+.|.. ++|||||++.|...+. +..++..+++.|+..|+.. ..+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHH
Confidence 554445555577888888743 8999999999863321 2235667888888888753 2467777776543 32
Q ss_pred C---CccccccccceEEEcCCCCHHHHHHHHHHc----c-CCCHHHHHHHHHH-------CCCCcHHHHHHHHHHHHccc
Q 004550 651 L---DSVGICDAFSVTYHVPTLKTDDAKKVLKQL----N-VFAEEDVDSASEA-------LNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 651 l---~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~-~~~~~d~~~~~~~-------~~~~~ir~ll~~l~~a~~~~ 715 (745)
+ ++ .+++||...|+||+|+.+|+..|++.. . .++++.+..+... -+.|++|.+.++++.+....
T Consensus 175 ~~~~np-~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 175 FFESNP-GFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HHhhCH-HHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 2 33 677899999999999999999999974 2 2333333333222 23899999999999886554
Q ss_pred cCCchhh-----cccCCCCccHhHHHHH
Q 004550 716 QGGAAEA-----IYSGREKIKISHFYDC 738 (745)
Q Consensus 716 ~~~~~~~-----~~~~~~~I~~~~~~~a 738 (745)
..+.... ...+-..|+.+|+..+
T Consensus 254 ~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 254 ANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 3221110 0122345666666543
No 89
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.2e-17 Score=166.66 Aligned_cols=197 Identities=18% Similarity=0.237 Sum_probs=145.8
Q ss_pred CCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCe-EEEEeccchhhh
Q 004550 531 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLS-IIILDDIERLLE 609 (745)
Q Consensus 531 ~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~-il~lDEid~l~~ 609 (745)
...|.+++|||||||||||+.|+-+|..+|+.|--+.+.+. .....+.+..|.++|+.|.++... +|||||+|.++.
T Consensus 380 h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV--APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 380 HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV--APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc--cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHH
Confidence 44678999999999999999999999999999876655542 112233455799999999988766 679999999987
Q ss_pred cCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHcc-------
Q 004550 610 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN------- 682 (745)
Q Consensus 610 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~------- 682 (745)
.+.. ..+|.....+|..+|-+.....++++++.+||+|..+|. ...+|+|..++||.|..+|+.++|..+-
T Consensus 458 eRnk-tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDs-AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~ 535 (630)
T KOG0742|consen 458 ERNK-TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDS-AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKP 535 (630)
T ss_pred Hhch-hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhH-HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCc
Confidence 7653 236677777888888777777888999999999999999 4458999999999999999999998620
Q ss_pred -----------------------C-CCHHHHHHHHHHCCCCcHHHHHHH---HHHHHccccCCchhhcccCCCCccHhHH
Q 004550 683 -----------------------V-FAEEDVDSASEALNDMPIKKLYML---IEMAAQGEQGGAAEAIYSGREKIKISHF 735 (745)
Q Consensus 683 -----------------------~-~~~~d~~~~~~~~~~~~ir~ll~~---l~~a~~~~~~~~~~~~~~~~~~I~~~~~ 735 (745)
. ..+.-+.++.....+.+.|++..+ .+.++...+ .-.++...|
T Consensus 536 ~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgse----------dcvLd~~lf 605 (630)
T KOG0742|consen 536 ATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSE----------DCVLDEALF 605 (630)
T ss_pred CCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhccc----------chhhHHHHH
Confidence 1 123334555555567777776554 344444432 234666666
Q ss_pred HHHHHH
Q 004550 736 YDCLQD 741 (745)
Q Consensus 736 ~~al~~ 741 (745)
.+.+++
T Consensus 606 ~e~v~y 611 (630)
T KOG0742|consen 606 DERVDY 611 (630)
T ss_pred HHHHHH
Confidence 666654
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=9.4e-17 Score=168.48 Aligned_cols=203 Identities=13% Similarity=0.166 Sum_probs=136.6
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHhcC---CCCceeeeeccCCCCChhHHHHHHHhhC-------CCCeEEEeccccc
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKVSK---GSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESM 572 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ll~GppGtGKT~la~~lA~~~-------~~~~i~v~~~~~l 572 (745)
+.|+..++..+.++..+... .+.....+ ..+..++||+||||||||++|+++|..+ ..+++.+...+ +
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~-l 102 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD-L 102 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH-H
Confidence 45677777666666655322 11112222 2345679999999999999999998753 23577776554 5
Q ss_pred cccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC--
Q 004550 573 IGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-- 650 (745)
Q Consensus 573 ~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-- 650 (745)
++.+.+++...++++|+.|. .+||||||++.+...+. ...++..+++.|+..|+.. ..+++||++++...+
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHH
Confidence 66555555556778888764 37999999999864321 2235678888898888753 245777777764321
Q ss_pred ---CCccccccccceEEEcCCCCHHHHHHHHHHc----c-CCCHHHHHHHHH---HC----CCCcHHHHHHHHHHHHccc
Q 004550 651 ---LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----N-VFAEEDVDSASE---AL----NDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 651 ---l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~-~~~~~d~~~~~~---~~----~~~~ir~ll~~l~~a~~~~ 715 (745)
++| .+++||+..++||+|+.+|+.+|++.. . ..+++....++. +. ..+++|.+.++++.+....
T Consensus 176 ~~~~np-~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 176 FYESNP-GLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HHhcCH-HHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 123 677999999999999999999999974 1 234433333332 21 2578999999998876543
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=5.7e-16 Score=154.31 Aligned_cols=208 Identities=15% Similarity=0.242 Sum_probs=154.2
Q ss_pred eeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHH
Q 004550 506 MVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIV 585 (745)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~ 585 (745)
+.++.. .+++.+++..+++..+. .....-|+|||||||.|||++|..+|+++|.++-...+|.. ++..++.
T Consensus 25 l~efiG-Q~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-------eK~gDla 95 (332)
T COG2255 25 LDEFIG-QEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL-------EKPGDLA 95 (332)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-------cChhhHH
Confidence 444433 45677777777766544 34667899999999999999999999999999776656543 2334566
Q ss_pred HHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------C-------CCCcEEEEEecCCCCC
Q 004550 586 KVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------P-------KGKKLLVIGTTSEVSF 650 (745)
Q Consensus 586 ~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~-------~~~~v~vI~ttn~~~~ 650 (745)
.++... .+..|+|||||+++. ..+-+.|...|+... + .-.+.-+||||.+..+
T Consensus 96 aiLt~L--e~~DVLFIDEIHrl~----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~ 163 (332)
T COG2255 96 AILTNL--EEGDVLFIDEIHRLS----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGM 163 (332)
T ss_pred HHHhcC--CcCCeEEEehhhhcC----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccc
Confidence 677664 345799999999985 344455555555421 1 1235678999999998
Q ss_pred CCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccC
Q 004550 651 LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSG 726 (745)
Q Consensus 651 l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~ 726 (745)
+.. .|+.||....++..|+.+|+.+|+++. +.-.+++....+.+.+.|..|=+..++.+.+..++. .+
T Consensus 164 lt~-PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V-------~~ 235 (332)
T COG2255 164 LTN-PLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV-------KG 235 (332)
T ss_pred ccc-hhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-------hc
Confidence 877 788999999999999999999999985 333445555556667788889999999999888765 36
Q ss_pred CCCccHhHHHHHHHHH
Q 004550 727 REKIKISHFYDCLQDM 742 (745)
Q Consensus 727 ~~~I~~~~~~~al~~~ 742 (745)
...|+.+-..+|++.+
T Consensus 236 ~~~I~~~ia~~aL~~L 251 (332)
T COG2255 236 DGDIDRDIADKALKML 251 (332)
T ss_pred CCcccHHHHHHHHHHh
Confidence 6778888888888744
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.66 E-value=3.1e-15 Score=159.96 Aligned_cols=211 Identities=21% Similarity=0.298 Sum_probs=142.1
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhh
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 295 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~ 295 (745)
+|++ +-|.+++++++ +.++......+ ..+.+++|+||||||||++|+++|+.+. ..+..++++....
T Consensus 2 ~~~~--~iG~~~~~~~l-~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~~~~~~~~~~~- 68 (305)
T TIGR00635 2 LLAE--FIGQEKVKEQL-QLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMG-VNLKITSGPALEK- 68 (305)
T ss_pred CHHH--HcCHHHHHHHH-HHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEeccchhcC-
Confidence 4677 99999999988 66554322211 3456799999999999999999999984 4444444432211
Q ss_pred ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc-----------
Q 004550 296 FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE----------- 364 (745)
Q Consensus 296 ~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~----------- 364 (745)
...+...+.... .+.+|||||+|.+.+.. ...|+..|+...
T Consensus 69 -----~~~l~~~l~~~~----------~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~ 120 (305)
T TIGR00635 69 -----PGDLAAILTNLE----------EGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSA 120 (305)
T ss_pred -----chhHHHHHHhcc----------cCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccc
Confidence 112222232221 13599999999986321 122333332111
Q ss_pred -----CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCC
Q 004550 365 -----SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 439 (745)
Q Consensus 365 -----~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 439 (745)
...++.+|++||++..+++++++ ||...+.+++|+.+++.+|++........ ..++..++.+++.+.|+.
T Consensus 121 ~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 121 RSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTP 195 (305)
T ss_pred cceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCc
Confidence 12358899999999999999998 99888999999999999999988764331 234455788999998865
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHh
Q 004550 440 GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 486 (745)
Q Consensus 440 g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 486 (745)
+.+..+++.+...|... ....++.+++..++..
T Consensus 196 -R~~~~ll~~~~~~a~~~-------------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 196 -RIANRLLRRVRDFAQVR-------------GQKIINRDIALKALEM 228 (305)
T ss_pred -chHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHH
Confidence 56677777766554331 1234778888877766
No 93
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=1.6e-15 Score=180.60 Aligned_cols=234 Identities=25% Similarity=0.271 Sum_probs=147.5
Q ss_pred CccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh-------
Q 004550 221 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------- 293 (745)
Q Consensus 221 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~------- 293 (745)
.+.|+++.++.| .+.+..+... +-.....+||+||||||||++|+++|+.++ .++..++...+.
T Consensus 321 ~~~G~~~~k~~i-~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~-~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 321 DHYGLKKVKERI-LEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALN-RKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hcCChHHHHHHH-HHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCeEEEeCCCcccHHHHcC
Confidence 388999988888 5544433211 112334799999999999999999999984 556656543321
Q ss_pred --hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC-----cc--
Q 004550 294 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VE-- 364 (745)
Q Consensus 294 --~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----~~-- 364 (745)
..|.|.....+.+.|..+.... .||||||||.+.+.... ...+.|+..+|. +.
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~---------~villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKN---------PLFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCC---------CEEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccc
Confidence 3577777777888887765432 28999999999853221 123445555552 11
Q ss_pred ------CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccc--ccc-----CCCCCcccHHHH
Q 004550 365 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM--KEN-----SFLAPDVNLQEL 431 (745)
Q Consensus 365 ------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~--~~~-----~~l~~~~~l~~l 431 (745)
..+++++|+|||.++.+++++++ ||. .|+++.|+.+++.+|++.++... ..+ ..-..+..+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 12578999999999999999999 996 78999999999999999876211 111 111223345555
Q ss_pred HH-HcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHH
Q 004550 432 AA-RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 485 (745)
Q Consensus 432 a~-~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 485 (745)
++ .+..+..++|+..+...+..+..+....... .........++.+++..-+.
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~-~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLVEQGEK-KKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHHhccCc-ccCCcccccCCHHHHHHhcC
Confidence 54 4444556677766666555554433321110 00011225667776655543
No 94
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=4e-15 Score=160.45 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=145.4
Q ss_pred CcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh
Q 004550 215 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 294 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~ 294 (745)
-+|++ +.|.++.++.+ +.++...... -.++.++|||||||||||++|+++|++++ ..+..++++.+.
T Consensus 22 ~~~~~--~vG~~~~~~~l-~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~-~~~~~~~~~~~~- 88 (328)
T PRK00080 22 KSLDE--FIGQEKVKENL-KIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMG-VNIRITSGPALE- 88 (328)
T ss_pred CCHHH--hcCcHHHHHHH-HHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhC-CCeEEEeccccc-
Confidence 47888 99999999888 5554321111 13467899999999999999999999984 445555554321
Q ss_pred hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhc------cC-cc---
Q 004550 295 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI------DG-VE--- 364 (745)
Q Consensus 295 ~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~------d~-~~--- 364 (745)
....+..++.... .+++|||||+|.+.+. ....+..++... +. ..
T Consensus 89 -----~~~~l~~~l~~l~----------~~~vl~IDEi~~l~~~----------~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 89 -----KPGDLAAILTNLE----------EGDVLFIDEIHRLSPV----------VEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred -----ChHHHHHHHHhcc----------cCCEEEEecHhhcchH----------HHHHHHHHHHhcceeeeeccCccccc
Confidence 1223444444322 2459999999998531 112222222211 10 00
Q ss_pred ---CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHH
Q 004550 365 ---SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 365 ---~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 441 (745)
...++.+|++||++..+++++++ ||...+.++.|+.+++.+|++........ ..++..+..+++.+.|.. +
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~p-R 217 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTP-R 217 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCc-h
Confidence 12357899999999999999998 99889999999999999999988776432 234445889999999855 6
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 442 ELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 442 dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
.+..+++.+..++..+ ....++.++...++..+
T Consensus 218 ~a~~~l~~~~~~a~~~-------------~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 218 IANRLLRRVRDFAQVK-------------GDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHh
Confidence 7777777766665432 12347777777777553
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.65 E-value=6e-15 Score=167.14 Aligned_cols=186 Identities=15% Similarity=0.205 Sum_probs=130.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEecccc-------------ccccc---hhhHHHHHHHHHH
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES-------------MIGLH---ESTKCAQIVKVFE 589 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~-------------l~g~~---~~~~~~~i~~~f~ 589 (745)
..++++|+||||||++++.+..++ .+.++.+++... +.|.. .......+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345799999999999999987543 256788887431 11111 1112345667776
Q ss_pred HHh--cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCC---Cccccccccce-E
Q 004550 590 DAY--KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFL---DSVGICDAFSV-T 663 (745)
Q Consensus 590 ~a~--~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l---~~~~l~~rf~~-~ 663 (745)
... .....||+|||||.|... ..+.|+.++++....+.++.|||++|..+.. ++ .+++||.. .
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdP-RLRSRLg~ee 930 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIP-RCRSRLAFGR 930 (1164)
T ss_pred hhhcccccceEEEeehHhhhCcc----------HHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhh-hhhhcccccc
Confidence 652 234579999999999621 2355666666554455689999999975543 33 55577763 5
Q ss_pred EEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHH---CCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHH
Q 004550 664 YHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFY 736 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~---~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~ 736 (745)
+.|+||+.+|+.+||+.. ....++++.++|++ ...||+|+++.+++.|...+ +...|+.+|+.
T Consensus 931 IvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik----------egskVT~eHVr 1000 (1164)
T PTZ00112 931 LVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK----------RGQKIVPRDIT 1000 (1164)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc----------CCCccCHHHHH
Confidence 899999999999999973 23345566666665 33899999999999999764 22479999999
Q ss_pred HHHHHH
Q 004550 737 DCLQDM 742 (745)
Q Consensus 737 ~al~~~ 742 (745)
+|+..+
T Consensus 1001 kAleei 1006 (1164)
T PTZ00112 1001 EATNQL 1006 (1164)
T ss_pred HHHHHH
Confidence 998754
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.64 E-value=2.8e-15 Score=153.11 Aligned_cols=181 Identities=22% Similarity=0.322 Sum_probs=132.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC---eEEEeccccccccchhhHHHHHHHHHHHHhc-----CCCeEEEEecc
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDI 604 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~---~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-----~~~~il~lDEi 604 (745)
....+++||||||||||++|+.+|..+.-+ ||.+.... .+.+.+|++|+++.+ ....|||||||
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--------a~t~dvR~ife~aq~~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEI 231 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--------cchHHHHHHHHHHHHHHhhhcceeEEEeHHh
Confidence 455789999999999999999999888766 66663322 355689999999853 34579999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC--CCccccccccceEEEcCCCCHHHHHHHHHHc-
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF--LDSVGICDAFSVTYHVPTLKTDDAKKVLKQL- 681 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~--l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~- 681 (745)
+++ ....+.+|+-.+ +...+++||+|.+... +..+.+ +| +.++.+.++..+++..||.+-
T Consensus 232 HRF----------NksQQD~fLP~V-----E~G~I~lIGATTENPSFqln~aLl-SR-C~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 232 HRF----------NKSQQDTFLPHV-----ENGDITLIGATTENPSFQLNAALL-SR-CRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh----------hhhhhhccccee-----ccCceEEEecccCCCccchhHHHH-hc-cceeEeccCCHHHHHHHHHHHH
Confidence 985 344455555433 2357888888866443 334333 44 778999999999999999871
Q ss_pred ----------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 682 ----------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 682 ----------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
..+.+..+...+...+.|+.|..++.+||+......+.. .+.+..++.+|+.+.++.
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g---~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSG---QSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcC---CcccceecHHHHHHHHhh
Confidence 124566788888999999999999999999655433211 123457999999999874
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=6.5e-15 Score=158.79 Aligned_cols=199 Identities=18% Similarity=0.241 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCC
Q 004550 516 IYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSP 595 (745)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~ 595 (745)
..+.+.......+. ...++.++||+||||||||++|+++|++.+.++..+.++.. .....+..++... ..
T Consensus 33 ~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~-------~~~~~l~~~l~~l--~~ 102 (328)
T PRK00080 33 VKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL-------EKPGDLAAILTNL--EE 102 (328)
T ss_pred HHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc-------cChHHHHHHHHhc--cc
Confidence 33444444433322 23567799999999999999999999999988776654421 1122355555543 34
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC---------------CCCCcEEEEEecCCCCCCCcccccccc
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP---------------PKGKKLLVIGTTSEVSFLDSVGICDAF 660 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~---------------~~~~~v~vI~ttn~~~~l~~~~l~~rf 660 (745)
++||||||||.+. ....+.|...|+... ....++.+|++||++..+++ .+++||
T Consensus 103 ~~vl~IDEi~~l~----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~-~L~sRf 171 (328)
T PRK00080 103 GDVLFIDEIHRLS----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTS-PLRDRF 171 (328)
T ss_pred CCEEEEecHhhcc----------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCH-HHHHhc
Confidence 6899999999984 223333444444221 01124678899999888877 577999
Q ss_pred ceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHH
Q 004550 661 SVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFY 736 (745)
Q Consensus 661 ~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~ 736 (745)
...+.|++|+.+++.+|+++. +...+++....+...++|+.|.+..+++.+...+.. .+...|+.+++.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~-------~~~~~I~~~~v~ 244 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQV-------KGDGVITKEIAD 244 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-------cCCCCCCHHHHH
Confidence 999999999999999999974 344455666666677888889999999877654422 233568999988
Q ss_pred HHHHHH
Q 004550 737 DCLQDM 742 (745)
Q Consensus 737 ~al~~~ 742 (745)
++++.+
T Consensus 245 ~~l~~~ 250 (328)
T PRK00080 245 KALDML 250 (328)
T ss_pred HHHHHh
Confidence 888754
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.7e-15 Score=147.81 Aligned_cols=196 Identities=21% Similarity=0.325 Sum_probs=142.8
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 293 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 293 (745)
+-.|++ ..|.++.++++ +-.+...... -...-++|||||||.||||||+.+|+++ +..+...+++-+.
T Consensus 22 P~~l~e--fiGQ~~vk~~L-~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~le 89 (332)
T COG2255 22 PKTLDE--FIGQEKVKEQL-QIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALE 89 (332)
T ss_pred cccHHH--hcChHHHHHHH-HHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEeccccccc
Confidence 456777 89999988887 4333322111 2344579999999999999999999999 5777888877652
Q ss_pred hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc----------
Q 004550 294 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------- 363 (745)
Q Consensus 294 ~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~---------- 363 (745)
....+-.++...+.+ +||||||||++.+. ..++ |...|+.+
T Consensus 90 ------K~gDlaaiLt~Le~~----------DVLFIDEIHrl~~~----------vEE~---LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 90 ------KPGDLAAILTNLEEG----------DVLFIDEIHRLSPA----------VEEV---LYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred ------ChhhHHHHHhcCCcC----------CeEEEehhhhcChh----------HHHH---hhhhhhheeEEEEEccCC
Confidence 233455566555443 49999999999643 2223 33344322
Q ss_pred c------CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC
Q 004550 364 E------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 437 (745)
Q Consensus 364 ~------~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g 437 (745)
. ...++.+||+|.+.-++...|+. ||.....+..++.++..+|++...+.+..+ ..+....++|+++.|
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~---i~~~~a~eIA~rSRG 215 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIE---IDEEAALEIARRSRG 215 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCC---CChHHHHHHHHhccC
Confidence 1 23469999999999999999998 999999999999999999999887766532 234457789999998
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004550 438 YSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 438 ~sg~dl~~l~~~A~~~a~~ 456 (745)
+++--..+++....+|.-
T Consensus 216 -TPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 216 -TPRIANRLLRRVRDFAQV 233 (332)
T ss_pred -CcHHHHHHHHHHHHHHHH
Confidence 666666777777766654
No 99
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3e-14 Score=164.92 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=108.3
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCcEEEccchh
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 292 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~~~v~~~~l 292 (745)
||+.++++++++ +.+.. +..++-+|.|.||+|||.++.-+|+... ...++.++...+
T Consensus 189 igr~deeirRvi-~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 189 IGRHDEEIRRVI-EILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred cCCchHHHHHHH-HHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhc
Confidence 677788887773 22221 2235679999999999999999998762 123334444333
Q ss_pred h--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 293 L--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 293 ~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
. .++.|+.+.+++.+.+.+.... +..||||||+|.+...... .+....-.++..+| .++.+.
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~~~-------~gvILfigelh~lvg~g~~--~~~~d~~nlLkp~L-------~rg~l~ 318 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVESGG-------GGVILFLGELHWLVGSGSN--YGAIDAANLLKPLL-------ARGGLW 318 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhcCC-------CcEEEEecceeeeecCCCc--chHHHHHHhhHHHH-------hcCCeE
Confidence 3 3678899999999999888532 2459999999999865433 11111112222222 235599
Q ss_pred EEEEeCCCCC-----CChhhhCCCCccceEEecCCCHHHHHHHHHHHHcc
Q 004550 371 LIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 415 (745)
Q Consensus 371 vI~~tn~~~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 415 (745)
+||+|...+. -||++-| ||+ .+.++.|+.+....||.....+
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 9999874332 3999999 998 5779999988877777765444
No 100
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-15 Score=159.12 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=124.5
Q ss_pred chhhHHHHHHHHH---HHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHH
Q 004550 512 RHKHIYQRAMLLV---EQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 512 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+++++.+..+. +.+++.+....++.|||||||||||++++|+|+.+++...-+.-.+. .....+++++
T Consensus 209 ~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-------~~n~dLr~LL 281 (457)
T KOG0743|consen 209 LKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-------KLDSDLRHLL 281 (457)
T ss_pred HHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-------cCcHHHHHHH
Confidence 3455666665554 35667777777999999999999999999999999998776643331 1112488888
Q ss_pred HHHhcCCCeEEEEeccchhhhcCCCCC--------cchHHHHHHHHHHHhcCCCCC--CcEEEEEecCCCCCCCccccc-
Q 004550 589 EDAYKSPLSIIILDDIERLLEYVPIGP--------RFSNIISQTMLVLLKRLPPKG--KKLLVIGTTSEVSFLDSVGIC- 657 (745)
Q Consensus 589 ~~a~~~~~~il~lDEid~l~~~~~~g~--------~~~~~~~~~Ll~~l~~~~~~~--~~v~vI~ttn~~~~l~~~~l~- 657 (745)
..+ .+.+||+|.+||.-++-+.... ..+...++.||..++++.... .+++ |-|||..+.|||+.+|
T Consensus 282 ~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi-vFTTNh~EkLDPALlRp 358 (457)
T KOG0743|consen 282 LAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII-VFTTNHKEKLDPALLRP 358 (457)
T ss_pred HhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE-EEecCChhhcCHhhcCC
Confidence 775 4568999999999876432111 124577899999999997544 4554 5599999999999998
Q ss_pred cccceEEEcCCCCHHHHHHHHHHccCC
Q 004550 658 DAFSVTYHVPTLKTDDAKKVLKQLNVF 684 (745)
Q Consensus 658 ~rf~~~i~~p~~~~~~~~~Il~~~~~~ 684 (745)
||.|.+|++..++.++++.++.++...
T Consensus 359 GRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 359 GRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999986433
No 101
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.9e-14 Score=150.29 Aligned_cols=179 Identities=25% Similarity=0.383 Sum_probs=125.5
Q ss_pred CCcccccCccccHHHHH--HHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFA--DIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~--~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
+-++++ +.|++..+. .+++++++.- +..+++|||||||||||+|+.||..++ ..+..+++-
T Consensus 20 P~~lde--~vGQ~HLlg~~~~lrr~v~~~-------------~l~SmIl~GPPG~GKTTlA~liA~~~~-~~f~~~sAv- 82 (436)
T COG2256 20 PKSLDE--VVGQEHLLGEGKPLRRAVEAG-------------HLHSMILWGPPGTGKTTLARLIAGTTN-AAFEALSAV- 82 (436)
T ss_pred CCCHHH--hcChHhhhCCCchHHHHHhcC-------------CCceeEEECCCCCCHHHHHHHHHHhhC-CceEEeccc-
Confidence 456777 888887652 2346666543 345799999999999999999999984 556666643
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
-.+.+.++++++.|+..... |+ -.||||||||.+.+..+ ..||..|+ .+.+++
T Consensus 83 ------~~gvkdlr~i~e~a~~~~~~-gr---~tiLflDEIHRfnK~QQ-------------D~lLp~vE----~G~iil 135 (436)
T COG2256 83 ------TSGVKDLREIIEEARKNRLL-GR---RTILFLDEIHRFNKAQQ-------------DALLPHVE----NGTIIL 135 (436)
T ss_pred ------cccHHHHHHHHHHHHHHHhc-CC---ceEEEEehhhhcChhhh-------------hhhhhhhc----CCeEEE
Confidence 23457899999999766432 22 24999999999964432 34676665 467899
Q ss_pred EEEe--CCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHcc----ccccCCCCCcccHHHHHHHcCCCC
Q 004550 372 IGMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK----MKENSFLAPDVNLQELAARTKNYS 439 (745)
Q Consensus 372 I~~t--n~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~----~~~~~~l~~~~~l~~la~~t~g~s 439 (745)
||+| |+.-.+.++|++ |.. ++++.+.+.++..++++..+.. +.......++..++.++..+.|-.
T Consensus 136 IGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 136 IGATTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred EeccCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 9988 455568999999 644 7889999999999999874322 221111224445677888887733
No 102
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=2e-14 Score=153.80 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=126.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 612 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~ 612 (745)
.++.+++|+||||||||++|+++|++.+.++..+..+.. . ....+...+... ..+.+||||||+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~-~------~~~~l~~~l~~~--~~~~vl~iDEi~~l~~--- 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL-E------KPGDLAAILTNL--EEGDVLFIDEIHRLSP--- 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-c------CchhHHHHHHhc--ccCCEEEEehHhhhCH---
Confidence 456789999999999999999999999887655543321 0 111233444333 3457999999999852
Q ss_pred CCCcchHHHHHHHHHHHhcCC---------------CCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHH
Q 004550 613 IGPRFSNIISQTMLVLLKRLP---------------PKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKV 677 (745)
Q Consensus 613 ~g~~~~~~~~~~Ll~~l~~~~---------------~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~I 677 (745)
.....|...++... .....+.+|++||++..+++ .+++||...+.|++|+.+++.++
T Consensus 96 -------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~-~l~sR~~~~~~l~~l~~~e~~~i 167 (305)
T TIGR00635 96 -------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTS-PLRDRFGIILRLEFYTVEELAEI 167 (305)
T ss_pred -------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCH-HHHhhcceEEEeCCCCHHHHHHH
Confidence 23344444443211 11124788899999988877 57789998999999999999999
Q ss_pred HHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 678 LKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 678 l~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
+++. +...+++....+...++|+.|.+..+++.+...+.. .+...|+.+++.+++..+
T Consensus 168 l~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~-------~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 168 VSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQV-------RGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH-------cCCCCcCHHHHHHHHHHh
Confidence 9863 233344444555556888889999998877554422 133569999999988764
No 103
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.2e-14 Score=157.20 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=122.1
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFE 589 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f~ 589 (745)
.+..+||+||||||||++|+++|+..++. ++.++.. .....+.++++.+
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-------s~~gVd~IReL~e 111 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA-------SNRGIENIRELRD 111 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh-------hcccHHHHHHHHH
Confidence 34568999999999999999999887652 2222111 1112445666665
Q ss_pred HHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEE
Q 004550 590 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 665 (745)
Q Consensus 590 ~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~ 665 (745)
.+. .....|+||||+|+|. ...+++|+..|+..+ ..+++|.+|+.+..+.+. +++| +..++
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls----------~~A~NALLKtLEEPp---~~viFILaTte~~kI~~T-I~SR-Cq~~~ 176 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLT----------DQSFNALLKTLEEPP---AHIVFILATTEFHKIPET-ILSR-CQDFI 176 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcC----------HHHHHHHHHHhhcCC---CceEEEeecCChhhccHH-HHhh-hheee
Confidence 553 3456799999999984 556777877776532 467777788888877764 4455 56899
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 666 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 666 ~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
|.+++.+++.+.+++. +...+++....+...+.|++|+++++++.+..... ..|+.+++.+.+
T Consensus 177 f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~-----------~~it~~~V~~~l 243 (484)
T PRK14956 177 FKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD-----------SKLTGVKIRKMI 243 (484)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC-----------CCcCHHHHHHHh
Confidence 9999988887777653 45556777788888999999999999998764431 237777766554
No 104
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.8e-14 Score=156.02 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=121.4
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC------------------------CeEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+.++||+||||||||++|+++|+..++ .++.++.+. ....+.++++.
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-------~~gid~iR~i~ 106 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-------NRGIDEIRKIR 106 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-------cCCHHHHHHHH
Confidence 34567899999999999999999987654 233332211 12234577766
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. +...||||||+|++. ...++.|+..++..+ ..+++|++|+.+..+.+ .+++|+ ..+
T Consensus 107 ~~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk~LE~p~---~~vv~Ilattn~~kl~~-~L~SR~-~vv 171 (472)
T PRK14962 107 DAVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLKTLEEPP---SHVVFVLATTNLEKVPP-TIISRC-QVI 171 (472)
T ss_pred HHHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHHHHHhCC---CcEEEEEEeCChHhhhH-HHhcCc-EEE
Confidence 66542 245799999999984 445677777777643 24555656666666655 455675 589
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.|++++.+++..+++.. +...+++....+...++|++|.+++.++.+...+ + ..|+.+++.+++.
T Consensus 172 ~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~----------~-~~It~e~V~~~l~ 240 (472)
T PRK14962 172 EFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFS----------E-GKITLETVHEALG 240 (472)
T ss_pred EECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHc
Confidence 99999999988888863 3344555566666677999999999999866533 1 2388888887765
No 105
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=3.5e-14 Score=169.13 Aligned_cols=189 Identities=16% Similarity=0.226 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccc---cchhhHHHHHH
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIG---LHESTKCAQIV 585 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g---~~~~~~~~~i~ 585 (745)
+++++.+..+.......+.....++||+||||||||++|+++|..++.+|+++..... +.| .+.+.....+.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~ 405 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII 405 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH
Confidence 3344444443332222222334579999999999999999999999999999864321 111 12222233567
Q ss_pred HHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc-----C-------CCCCCcEEEEEecCCCCCCCc
Q 004550 586 KVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR-----L-------PPKGKKLLVIGTTSEVSFLDS 653 (745)
Q Consensus 586 ~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~-----~-------~~~~~~v~vI~ttn~~~~l~~ 653 (745)
+.|..+....| ||||||||++..... ....++|+..|+. + +-...++++|+|||..+.+++
T Consensus 406 ~~l~~~~~~~~-villDEidk~~~~~~------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 406 QGLKKAKTKNP-LFLLDEIDKIGSSFR------GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred HHHHHhCcCCC-EEEEechhhcCCccC------CCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 78888765554 899999999974221 1123455555542 1 111247899999999999988
Q ss_pred cccccccceEEEcCCCCHHHHHHHHHHc---------c------CCCHHHHHHHHHHCC-CCcHHHHHHHHHHH
Q 004550 654 VGICDAFSVTYHVPTLKTDDAKKVLKQL---------N------VFAEEDVDSASEALN-DMPIKKLYMLIEMA 711 (745)
Q Consensus 654 ~~l~~rf~~~i~~p~~~~~~~~~Il~~~---------~------~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a 711 (745)
+ +++||. .++|++|+.+++.+|++.. + .++++.+..++..++ ..++|.|...++..
T Consensus 479 ~-L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 479 P-LLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred H-HhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 4 557885 7899999999999999752 1 256677777887766 66777766655444
No 106
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=2.2e-13 Score=149.61 Aligned_cols=230 Identities=21% Similarity=0.245 Sum_probs=144.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--------CCc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--------MEP 284 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--------~~~ 284 (745)
+++..++ +.|.++++++| ...+...+. | ..+.+++++||||||||++++++++.+.. ..+
T Consensus 10 ~~~~p~~--l~gRe~e~~~l-~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~ 77 (365)
T TIGR02928 10 PDYVPDR--IVHRDEQIEEL-AKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVT 77 (365)
T ss_pred CCCCCCC--CCCcHHHHHHH-HHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Confidence 4555566 89999999999 455432211 1 34467999999999999999999987631 234
Q ss_pred EEEccchhhhh----------cc--c--------hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCC
Q 004550 285 KIVNGPEVLSK----------FV--G--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD 344 (745)
Q Consensus 285 ~~v~~~~l~~~----------~~--g--------~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~ 344 (745)
..++|....+. .. | ...+.+..+++..... ..+.||+|||+|.+...
T Consensus 78 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlvIDE~d~L~~~------ 144 (365)
T TIGR02928 78 VYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-------GDSLIIVLDEIDYLVGD------ 144 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECchhhhccC------
Confidence 56777543221 10 1 0122233344333211 23679999999999721
Q ss_pred CCcchhHHHHHHHHhccCc-cCCCcEEEEEEeCCCC---CCChhhhCCCCcc-ceEEecCCCHHHHHHHHHHHHcccccc
Q 004550 345 GTGVHDSIVNQLLTKIDGV-ESLNNVLLIGMTNRKD---MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKEN 419 (745)
Q Consensus 345 ~~~~~~~~~~~LL~~~d~~-~~~~~v~vI~~tn~~~---~id~al~r~gRf~-~~i~i~~Pd~~~r~~Il~~~~~~~~~~ 419 (745)
.+.++..|+...+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++.....
T Consensus 145 ----~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~ 218 (365)
T TIGR02928 145 ----DDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYD 218 (365)
T ss_pred ----CcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 123455555542211 1235789999999886 47888877 664 679999999999999999887632111
Q ss_pred CCCCCcccHHHH---HHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 420 SFLAPDVNLQEL---AARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 420 ~~l~~~~~l~~l---a~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
..+ ++..++.+ +..+.| ..+....+|+.|...|..+. ...|+.+|+..|+..+.
T Consensus 219 ~~~-~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~-------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 GVL-DDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREG-------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred CCC-ChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-------------CCCCCHHHHHHHHHHHH
Confidence 112 22223343 344445 34455568888887776532 23589999999888764
No 107
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=9.7e-14 Score=154.16 Aligned_cols=171 Identities=23% Similarity=0.375 Sum_probs=124.1
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHh----cCCCeEEEEeccchhhh
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLE 609 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~----~~~~~il~lDEid~l~~ 609 (745)
...+++|+||||||||++|+++|+..+.+|+.++.... ....++++++.+. .....||||||||++.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~- 105 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN- 105 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-
Confidence 34589999999999999999999999999998865432 1234666666653 2356899999999874
Q ss_pred cCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCC-C-CCCCccccccccceEEEcCCCCHHHHHHHHHHc------
Q 004550 610 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE-V-SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL------ 681 (745)
Q Consensus 610 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~-~-~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~------ 681 (745)
...++.|+..++. ..+++|++|+. + ..+++ .+++|+ ..+.|++++.+++..++++.
T Consensus 106 ---------~~~q~~LL~~le~-----~~iilI~att~n~~~~l~~-aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~ 169 (413)
T PRK13342 106 ---------KAQQDALLPHVED-----GTITLIGATTENPSFEVNP-ALLSRA-QVFELKPLSEEDIEQLLKRALEDKER 169 (413)
T ss_pred ---------HHHHHHHHHHhhc-----CcEEEEEeCCCChhhhccH-HHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc
Confidence 4456677776653 35667766643 2 24444 555776 78999999999999999873
Q ss_pred cC-CCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 682 NV-FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 682 ~~-~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
+. ..+++..+.+...++|++|+++++++.+.... ..|+.+++.++++.
T Consensus 170 ~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~------------~~It~~~v~~~~~~ 218 (413)
T PRK13342 170 GLVELDDEALDALARLANGDARRALNLLELAALGV------------DSITLELLEEALQK 218 (413)
T ss_pred CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcc------------CCCCHHHHHHHHhh
Confidence 11 23455556666677999999999999987541 34777777777764
No 108
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=7.4e-14 Score=153.32 Aligned_cols=196 Identities=15% Similarity=0.213 Sum_probs=126.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCC---------CCeEEEeccccc-------------c--ccchh----hHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSD---------FPFVKIISAESM-------------I--GLHES----TKCAQI 584 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~---------~~~i~v~~~~~l-------------~--g~~~~----~~~~~i 584 (745)
..+.+++++||||||||+++++++.... +.++.+++.... . |.... ...+..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4456799999999999999999986431 567777764421 0 11000 112233
Q ss_pred HHHHHHHh-cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc
Q 004550 585 VKVFEDAY-KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS 661 (745)
Q Consensus 585 ~~~f~~a~-~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~ 661 (745)
..+++... ...+.||+|||+|.+... .+.++..|+.+.+.......++.+|+++|.++..+.. .+.+||.
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC 190 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC
Confidence 44555443 345679999999999621 1223333333311111233578899999998754322 3446775
Q ss_pred -eEEEcCCCCHHHHHHHHHHcc------CCCHHHHHHHHHH---CCCCcHHHHHHHHHHHHccccCCchhhcccCCCCcc
Q 004550 662 -VTYHVPTLKTDDAKKVLKQLN------VFAEEDVDSASEA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIK 731 (745)
Q Consensus 662 -~~i~~p~~~~~~~~~Il~~~~------~~~~~d~~~~~~~---~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~ 731 (745)
..++|+||+.+|+.+|++... ...++++...+.. ...|++|.++++++.|...+.. .+...|+
T Consensus 191 ~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~-------~~~~~it 263 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER-------EGAERVT 263 (365)
T ss_pred cceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------cCCCCCC
Confidence 679999999999999998631 2233444433333 2379999999999999876633 3557899
Q ss_pred HhHHHHHHHHH
Q 004550 732 ISHFYDCLQDM 742 (745)
Q Consensus 732 ~~~~~~al~~~ 742 (745)
.+|+.+|++.+
T Consensus 264 ~~~v~~a~~~~ 274 (365)
T TIGR02928 264 EDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 109
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.7e-14 Score=150.23 Aligned_cols=192 Identities=18% Similarity=0.277 Sum_probs=132.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC-----CeEEEeccccc------------ccc--chh-hHHHHHHHHHHHHh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF-----PFVKIISAESM------------IGL--HES-TKCAQIVKVFEDAY 592 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~-----~~i~v~~~~~l------------~g~--~~~-~~~~~i~~~f~~a~ 592 (745)
..|.++++|||||||||++++.++.+..- .++.++|...- ++. ..+ ...+....+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 44556999999999999999999976532 27888776541 110 001 11222333333332
Q ss_pred -cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc-eEEEcCC
Q 004550 593 -KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS-VTYHVPT 668 (745)
Q Consensus 593 -~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~-~~i~~p~ 668 (745)
....-||+|||+|.|.+... +.|..+++.......++.+|+.+|..+..+.. .+.++|. ..|.|||
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~p 189 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPP 189 (366)
T ss_pred hcCCeEEEEEcchhhhccccc----------hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCC
Confidence 34567999999999984321 45666655544445688999999987643332 3445554 5699999
Q ss_pred CCHHHHHHHHHHc------cCCCHHHHHHHHHHCC---CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 669 LKTDDAKKVLKQL------NVFAEEDVDSASEALN---DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 669 ~~~~~~~~Il~~~------~~~~~~d~~~~~~~~~---~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
|+.+|+..|+... ....++++.++|.... +||+|.++.+++.|+..|+. .+.++|+.+|+.+|.
T Consensus 190 Y~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~-------~~~~~v~~~~v~~a~ 262 (366)
T COG1474 190 YTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER-------EGSRKVSEDHVREAQ 262 (366)
T ss_pred CCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh-------hCCCCcCHHHHHHHH
Confidence 9999999999973 2444556666655433 88999999999999999865 477899999999995
Q ss_pred HH
Q 004550 740 QD 741 (745)
Q Consensus 740 ~~ 741 (745)
.+
T Consensus 263 ~~ 264 (366)
T COG1474 263 EE 264 (366)
T ss_pred HH
Confidence 54
No 110
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.8e-13 Score=155.29 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=114.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
+....+||+||+|||||++|+++|+..++. ++.++.. ...+.+.++++.
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa-------s~rgVDdIReLI 108 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA-------SNRGVDEMAALL 108 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc-------ccccHHHHHHHH
Confidence 344567999999999999999999876542 2222111 112345677777
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. ....|+||||+|.|. ....++|+..|+..+ ..+.||.+||.++.+.+ .+++| +..|
T Consensus 109 e~a~~~P~~gr~KVIIIDEah~LT----------~~A~NALLKtLEEPP---~~v~FILaTtd~~KIp~-TIrSR-Cq~f 173 (830)
T PRK07003 109 ERAVYAPVDARFKVYMIDEVHMLT----------NHAFNAMLKTLEEPP---PHVKFILATTDPQKIPV-TVLSR-CLQF 173 (830)
T ss_pred HHHHhccccCCceEEEEeChhhCC----------HHHHHHHHHHHHhcC---CCeEEEEEECChhhccc-hhhhh-eEEE
Confidence 77642 356899999999984 455677777777643 25666667777777755 34455 5799
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
+|.+++.+++.+.|++ .+...+++...++.+.+.|++|+.+++++.+...
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999998888776665 3445567778888888999999999998876644
No 111
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.1e-14 Score=141.66 Aligned_cols=143 Identities=21% Similarity=0.315 Sum_probs=112.4
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---------CCCeEEEeccccccccchhhHHHHHHHHHHHHh-----cCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAESMIGLHESTKCAQIVKVFEDAY-----KSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---------~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~-----~~~~~il~ 600 (745)
.+-+||+||||||||+++|++|..+ ....+.+++.. +++++.+++.+.+.++|++.. +...-.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3568999999999999999999754 34467787766 566777777778888888753 22334568
Q ss_pred EeccchhhhcCC-----CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHH
Q 004550 601 LDDIERLLEYVP-----IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 601 lDEid~l~~~~~-----~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
|||.|+|+..|. .-|...-++.+++++.|+++. ...+|++++|+|-.+.+|.+ +.+|=|-+.++.+|+...+.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~siD~A-fVDRADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNLTDSIDVA-FVDRADIVFYVGPPTAEAIY 333 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccchHHHHHHH-hhhHhhheeecCCccHHHHH
Confidence 899999987652 234445578899999999984 45689999999999999984 45888999999999999999
Q ss_pred HHHHH
Q 004550 676 KVLKQ 680 (745)
Q Consensus 676 ~Il~~ 680 (745)
+|++.
T Consensus 334 ~Ilks 338 (423)
T KOG0744|consen 334 EILKS 338 (423)
T ss_pred HHHHH
Confidence 99986
No 112
>PLN03025 replication factor C subunit; Provisional
Probab=99.54 E-value=1.4e-13 Score=147.77 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=104.6
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCC-----CCeEEEeccccccccchhhHHHHHHHHHHH---Hh----cCCCeEEEEe
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGLHESTKCAQIVKVFED---AY----KSPLSIIILD 602 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~-----~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~---a~----~~~~~il~lD 602 (745)
..++||+||||||||++|+++|++.. ..++.++.++. .| ...+++..+. .. ...+.|++||
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~-~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiD 106 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD-RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILD 106 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc-cc------HHHHHHHHHHHHhccccCCCCCeEEEEEe
Confidence 35799999999999999999998762 23455544432 11 1123333222 11 1346899999
Q ss_pred ccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH--
Q 004550 603 DIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ-- 680 (745)
Q Consensus 603 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~-- 680 (745)
|+|.+. ...+++|+..++..+. ...+|.++|....+.+ .+++| +..++|++++.+++...++.
T Consensus 107 E~d~lt----------~~aq~aL~~~lE~~~~---~t~~il~~n~~~~i~~-~L~SR-c~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 107 EADSMT----------SGAQQALRRTMEIYSN---TTRFALACNTSSKIIE-PIQSR-CAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred chhhcC----------HHHHHHHHHHHhcccC---CceEEEEeCCccccch-hHHHh-hhcccCCCCCHHHHHHHHHHHH
Confidence 999974 4457778887875432 2233445666655554 45566 46899999998888877775
Q ss_pred --ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 681 --LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 681 --~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
.+...+++....+...++||+|.+++.++.+..
T Consensus 172 ~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344445555666666789999999999996553
No 113
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.53 E-value=2.8e-14 Score=121.88 Aligned_cols=81 Identities=31% Similarity=0.436 Sum_probs=65.6
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCCC-CCCceEEEEeCCe----EEEEEEeeCCCCCCCcEeecHHHHhccCccC
Q 004550 14 TMNVINTPSADLALTNLAYCSPADLLNFRVP-NSNLFLASVAGDS----FVLSLITSHPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 14 ~l~V~~~p~~~~~~~N~v~vs~~d~~~l~~~-g~~~~~v~i~~~~----~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
+|+|++||+++++++||||+||++|++|++. | .++.+.|++ +|| ...+++. ++|.|+||+.||+|+++++
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~g---d~v~i~g~~~tv~~v~-~~~~~~~-~~g~I~l~~~~R~n~~v~i 75 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPG---DVVLISGKRKTVAFVF-PDRPDDS-PPGVIRLSGIQRKNAGVSI 75 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TT---EEEEEETTTEEEEEEE-EECCSTT-CTTEEEE-HHHHHHCT--T
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCc---cEEEEeCCceEEEEEE-ECCCCCC-CCCEEEECHHHHhhCCcCC
Confidence 5999999999999999999999999999885 6 688886664 455 4444444 8999999999999999999
Q ss_pred CCeEEEEEeCC
Q 004550 89 GDHVSLNRFIP 99 (745)
Q Consensus 89 ~~~v~~~~~~~ 99 (745)
||.|+|+|+++
T Consensus 76 gd~V~V~~~~~ 86 (87)
T PF02359_consen 76 GDRVTVRPYDP 86 (87)
T ss_dssp TSEEEEEEETT
T ss_pred CCEEEEEECCC
Confidence 99999999974
No 114
>PRK04195 replication factor C large subunit; Provisional
Probab=99.53 E-value=4.1e-13 Score=152.01 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhc--
Q 004550 516 IYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYK-- 593 (745)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-- 593 (745)
..+.+..+.+.+. ...++.++||+||||||||++|+++|++.+++++.++.++.. ....++.+...+..
T Consensus 22 ~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r-------~~~~i~~~i~~~~~~~ 92 (482)
T PRK04195 22 AKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR-------TADVIERVAGEAATSG 92 (482)
T ss_pred HHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc-------cHHHHHHHHHHhhccC
Confidence 3344444444333 234578999999999999999999999999999998766531 11234444333322
Q ss_pred ----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCC
Q 004550 594 ----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 669 (745)
Q Consensus 594 ----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~ 669 (745)
..+.||+|||+|.+.... .....++|+..++.. +..+|.++|.+..+....++ +++..+.|++|
T Consensus 93 sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~-----~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~ 160 (482)
T PRK04195 93 SLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKA-----KQPIILTANDPYDPSLRELR-NACLMIEFKRL 160 (482)
T ss_pred cccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcC-----CCCEEEeccCccccchhhHh-ccceEEEecCC
Confidence 256899999999986321 123456666666632 22345567777655543443 45678999999
Q ss_pred CHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 670 KTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 670 ~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+.+++..+++. .+...+.+....+...+++++|.+++.++.++.
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 99888888876 344455666666667789999999999988543
No 115
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.8e-13 Score=148.69 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=135.6
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE----EE--
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----IV-- 287 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~----~v-- 287 (745)
+-+|++ +.|.+..++.| +.++...- .+..+||+||||||||++|+.+|+.+++.... .-
T Consensus 14 P~~f~d--vVGQe~iv~~L-~~~i~~~r------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 14 PQFFRD--VIHQDLAIGAL-QNALKSGK------------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred CCCHHH--HhChHHHHHHH-HHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 567898 99999998887 66665431 23458999999999999999999998653210 00
Q ss_pred -ccchhhhh-------c---cchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 288 -NGPEVLSK-------F---VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 288 -~~~~l~~~-------~---~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
+|..+... + .......+|++.+.+... +..+ ...|+||||+|.|. ....+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~-p~~g---~~KV~IIDEah~Ls-------------~~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFA-PMGG---KYKVYIIDEVHMLT-------------DQSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhh-hhcC---CCEEEEEechhhcC-------------HHHHHHH
Confidence 01111100 0 011234566666655432 2111 24599999999984 3456778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+. ...++++|++|+.++.|.+++++ |+. .+.|..++.++..+.++..+.... ...++..+..+++.++
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888874 44689999999999999999999 875 688989988888888887766432 1234556888999888
Q ss_pred CCCHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVS 452 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~ 452 (745)
| +.++.-++++.+..
T Consensus 214 G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 214 G-SVRDMLSFMEQAIV 228 (484)
T ss_pred C-hHHHHHHHHHHHHH
Confidence 7 66777777766553
No 116
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-13 Score=153.42 Aligned_cols=162 Identities=25% Similarity=0.319 Sum_probs=120.9
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch------hh--
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE------VL-- 293 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~------l~-- 293 (745)
=-||++.+++| -+.++-....+. ....=++|+||||+|||+|++.||+.++ +.|+.++... +-
T Consensus 325 HYGLekVKeRI-lEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~-RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 325 HYGLEKVKERI-LEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALG-RKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccCchhHHHHH-HHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhC-CCEEEEecCccccHHHhccc
Confidence 46888888888 455544332221 1223488999999999999999999994 6665554332 22
Q ss_pred -hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc---------
Q 004550 294 -SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------- 363 (745)
Q Consensus 294 -~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--------- 363 (745)
..|+|....++-+-...|....| ++++||||.+..+-.+.. -..||..+|.-
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP---------v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhY 457 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP---------VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHY 457 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC---------eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhcc
Confidence 27999999999888888887764 999999999974432211 13355555532
Q ss_pred ----cCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHH
Q 004550 364 ----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 413 (745)
Q Consensus 364 ----~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 413 (745)
-..++|+||+|+|..+.|+.+|+. |++ .|+++-+++++..+|.+.|+
T Consensus 458 Lev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 458 LEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 124679999999999999999998 987 79999999999999999986
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=8.8e-13 Score=146.33 Aligned_cols=232 Identities=16% Similarity=0.183 Sum_probs=147.3
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC----CCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~----~~~~~v~ 288 (745)
+++..+. +.|-+++++++ ...+...+. -..+.++++|||||||||++++.+++.+.. ..+..++
T Consensus 25 ~~~~P~~--l~~Re~e~~~l-~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 25 PDYVPEN--LPHREEQIEEL-AFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CCCcCCC--CCCHHHHHHHH-HHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4444555 88999999998 444432211 134567999999999999999999988732 3456677
Q ss_pred cchhhh----------hccc-------h-hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 289 GPEVLS----------KFVG-------E-TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 289 ~~~l~~----------~~~g-------~-~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
|....+ ...+ . ..+.+..+.+..... ..+.||+|||+|.+.... ..
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~viviDE~d~l~~~~---------~~ 156 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER-------DRVLIVALDDINYLFEKE---------GN 156 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCEEEEEECCHhHhhccC---------Cc
Confidence 754322 1111 0 112222333222221 236799999999997211 12
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCC---CCChhhhCCCCc-cceEEecCCCHHHHHHHHHHHHccccccCCCCCcc
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRL-EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDV 426 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~---~id~al~r~gRf-~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~ 426 (745)
..+..|+..++.... .++.+|+++|..+ .+++.+.+ || ...|.+++++.++..+|++.+++.-.... ..++.
T Consensus 157 ~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~ 232 (394)
T PRK00411 157 DVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDE 232 (394)
T ss_pred hHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHh
Confidence 356666665554432 3788999988764 46787776 55 35789999999999999998875321111 22444
Q ss_pred cHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhc
Q 004550 427 NLQELAARTKNYS--GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 427 ~l~~la~~t~g~s--g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 489 (745)
.++.+++.+.+.+ .+.+-.+|+.|...|..+. ...|+.+|+..|+..+.+
T Consensus 233 ~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~-------------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 233 VLDLIADLTAREHGDARVAIDLLRRAGLIAEREG-------------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHHH
Confidence 5777777774432 3445567788877776532 246899999999887643
No 118
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.52 E-value=1.3e-13 Score=163.38 Aligned_cols=198 Identities=19% Similarity=0.230 Sum_probs=135.2
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhcCCCeEEEEe
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIILD 602 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~~~~~il~lD 602 (745)
...+++|+||||||||++|+.+|... +..++.++....+.| .+.++.++.++++|+.+.+..++|||||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 45688999999999999999999865 666777765554444 4566777899999999987778999999
Q ss_pred ccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHHHH
Q 004550 603 DIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKKV 677 (745)
Q Consensus 603 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~I 677 (745)
|||.|.+.+..+.. +..+.+.|...|. ...+.+||+||..+. .|+ .+.+||. .+++++|+.+++.+|
T Consensus 282 Eih~l~~~g~~~~~-~~~~~~~L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~-al~rRf~-~i~v~~p~~~~~~~i 353 (731)
T TIGR02639 282 EIHTIVGAGATSGG-SMDASNLLKPALS-----SGKLRCIGSTTYEEYKNHFEKDR-ALSRRFQ-KIDVGEPSIEETVKI 353 (731)
T ss_pred cHHHHhccCCCCCc-cHHHHHHHHHHHh-----CCCeEEEEecCHHHHHHHhhhhH-HHHHhCc-eEEeCCCCHHHHHHH
Confidence 99999865432111 1223444555443 247899999997442 345 5667997 799999999999999
Q ss_pred HHHc--------c-CCCHHHHHHHHHHCC-----CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 678 LKQL--------N-VFAEEDVDSASEALN-----DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 678 l~~~--------~-~~~~~d~~~~~~~~~-----~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
|+.. . .++++.+..++.... ..-..+++++++.|....... ........|+.+|+.+++...
T Consensus 354 l~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~---~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 354 LKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLR---PKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcC---cccccccccCHHHHHHHHHHH
Confidence 9952 1 245555555544332 223556778887765533210 000123458999999888754
No 119
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=6.9e-13 Score=148.03 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=129.8
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-+|++ |.|.+...+.+ +.++... ..+.++|||||||||||++|+++|+.+.+..
T Consensus 10 P~~~~d--ivGq~~i~~~L-~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 10 PKTFSE--VVGQDHVKKLI-INALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 567888 99998876666 6666543 2344699999999999999999999986421
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
+..++++. ...-..+|++.+.+... |.. +...|+||||+|.+. .
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~-p~~---~~~kVvIIDE~h~Lt-------------~ 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYR-PME---GKYKVYIIDEVHMLT-------------K 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhC-hhc---CCeEEEEEEChHHhH-------------H
Confidence 22222211 11223456666555432 221 234699999999984 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
..++.|+..++. ..+.+++|++|+.+..+++++++ |+. .+++.+++.++...+++...+.... ..++..++.
T Consensus 132 ~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~ 203 (472)
T PRK14962 132 EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGI---EIDREALSF 203 (472)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 234567777764 33568888888888899999998 875 7999999999999999887654321 234456788
Q ss_pred HHHHcCCCCHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~ 451 (745)
+++.+.| ..+.+.+.++.+.
T Consensus 204 Ia~~s~G-dlR~aln~Le~l~ 223 (472)
T PRK14962 204 IAKRASG-GLRDALTMLEQVW 223 (472)
T ss_pred HHHHhCC-CHHHHHHHHHHHH
Confidence 8888875 5555555555443
No 120
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=9.7e-14 Score=148.58 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=100.2
Q ss_pred CCeEEEEeccchhhhcCC-CCCcchH-HHHHHHHHHHhcCC-------CCCCcEEEEEecC----CCCCCCccccccccc
Q 004550 595 PLSIIILDDIERLLEYVP-IGPRFSN-IISQTMLVLLKRLP-------PKGKKLLVIGTTS----EVSFLDSVGICDAFS 661 (745)
Q Consensus 595 ~~~il~lDEid~l~~~~~-~g~~~~~-~~~~~Ll~~l~~~~-------~~~~~v~vI~ttn----~~~~l~~~~l~~rf~ 661 (745)
...||||||||+++.... .|..+|. -+++.||.++++.. -...++++|++-. .|+.|-| .+.+||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIP-El~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIP-ELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccH-HHhCccc
Confidence 446999999999996552 3444554 49999999998842 1234677776543 2333333 5669999
Q ss_pred eEEEcCCCCHHHHHHHHHHc------------------cCCCHHHHHHHHHHC-------CCCcHHHHHHHHHHHHcccc
Q 004550 662 VTYHVPTLKTDDAKKVLKQL------------------NVFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 662 ~~i~~p~~~~~~~~~Il~~~------------------~~~~~~d~~~~~~~~-------~~~~ir~ll~~l~~a~~~~~ 716 (745)
.++.+.+++.+++..||..- ..|+++.+.+++... .+.++|.|..+++..-....
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999631 146676666655443 38899999999998866543
Q ss_pred CCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 717 GGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 717 ~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
-. ..+...+.-.|+.+.+.+.+.+++
T Consensus 406 fe-~p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 406 FE-APDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred hc-CCCCCCCEEEECHHHHHhHHHHHH
Confidence 21 111112334588888888887664
No 121
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.1e-13 Score=144.63 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=120.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEe----------------ccccc-cccchhhHHHHHHHHHHHHhcC-
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII----------------SAESM-IGLHESTKCAQIVKVFEDAYKS- 594 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~----------------~~~~l-~g~~~~~~~~~i~~~f~~a~~~- 594 (745)
+.+..+||+||||+|||++|+++|+...+...... .++.+ +......+.+.++++.+.+...
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p 115 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP 115 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc
Confidence 34556799999999999999999987653210000 01111 0111113455677877766432
Q ss_pred ---CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 595 ---PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 595 ---~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
...|+||||+|.+. ....++|+..++..+. .+.+|.+|+.++.+.+ .+++|+ ..++|++++.
T Consensus 116 ~~~~~kviIIDEa~~l~----------~~a~naLLk~lEe~~~---~~~fIl~t~~~~~l~~-tI~SRc-~~~~~~~l~~ 180 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLS----------RHSFNALLKTLEEPPQ---HIKFILATTDVEKIPK-TILSRC-LQFKLKIISE 180 (363)
T ss_pred ccCCceEEEEEChhhcC----------HHHHHHHHHHHhcCCC---CeEEEEEcCChHhhhH-HHHhhc-eEEeCCCCCH
Confidence 35699999999873 4456677777776432 4455556666666655 445664 6899999999
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 672 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 672 ~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+++.++++. .+...+++....+...++|++|++++.++.+.... ...|+.+++.+++.
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~-----------~~~It~~~v~~~l~ 242 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLG-----------KGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHC
Confidence 998888775 34434555566666778999999999999876432 24588887777654
No 122
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6.4e-13 Score=148.75 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=124.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEE-----------------Ee---ccccc-cccchhhHHHHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK-----------------II---SAESM-IGLHESTKCAQIVKVFEDA 591 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~-----------------v~---~~~~l-~g~~~~~~~~~i~~~f~~a 591 (745)
+.+.++||+||||||||++|+++|+..++..-. +. .++.+ +......+...++++++.+
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a 120 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA 120 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH
Confidence 456789999999999999999999877542100 00 00100 1111123456788888887
Q ss_pred hcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcC
Q 004550 592 YKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 667 (745)
Q Consensus 592 ~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p 667 (745)
... ...|+||||+|.+. ....++|+..|+..++ .+++|.+|+.++.+.+ .+++|. ..++|+
T Consensus 121 ~~~P~~~~~KVvIIDEa~~Ls----------~~a~naLLk~LEepp~---~~vfI~aTte~~kI~~-tI~SRc-~~~ef~ 185 (507)
T PRK06645 121 EYKPLQGKHKIFIIDEVHMLS----------KGAFNALLKTLEEPPP---HIIFIFATTEVQKIPA-TIISRC-QRYDLR 185 (507)
T ss_pred HhccccCCcEEEEEEChhhcC----------HHHHHHHHHHHhhcCC---CEEEEEEeCChHHhhH-HHHhcc-eEEEcc
Confidence 533 45799999999874 4556677777775432 4455555666666655 344554 689999
Q ss_pred CCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 668 TLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 668 ~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+++.+++..++++ .+...+++....+...++|++|.+++.++.+...+.. +...|+.+++.+.+.
T Consensus 186 ~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~--------~~~~It~~~V~~llg 254 (507)
T PRK06645 186 RLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAK--------SDNIISPQVINQMLG 254 (507)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc--------CCCCcCHHHHHHHHC
Confidence 9999988887775 3444455666666677899999999999998655421 123588888877654
No 123
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.5e-13 Score=149.98 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=119.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
+.+..+||+||+|+|||++|+++|+..++. ++.++..+ ..+.+.+|++.
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-------~~~VddIReli 107 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-------RTKVEDTRELL 107 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-------cCCHHHHHHHH
Confidence 445678999999999999999999887652 22222211 12455678877
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. ....|+||||+|+|. ....++|+..|+..+. .+.+|.+|+.+..+.. .+++| +.++
T Consensus 108 ~~~~y~P~~gk~KV~IIDEVh~LS----------~~A~NALLKtLEEPP~---~v~FILaTtd~~kIp~-TIlSR-Cq~f 172 (702)
T PRK14960 108 DNVPYAPTQGRFKVYLIDEVHMLS----------THSFNALLKTLEEPPE---HVKFLFATTDPQKLPI-TVISR-CLQF 172 (702)
T ss_pred HHHhhhhhcCCcEEEEEechHhcC----------HHHHHHHHHHHhcCCC---CcEEEEEECChHhhhH-HHHHh-hhee
Confidence 76532 356799999999984 4466778888876532 4455556666666654 33344 5799
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+|.+++.+++.+.+++ .+...+.+....+...++|++|.++++++.+.... ...|+.+++.+.+
T Consensus 173 eFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg-----------~g~IT~edV~~lL 240 (702)
T PRK14960 173 TLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYG-----------QGAVHHQDVKEML 240 (702)
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHh
Confidence 9999998888777664 45555666667777788999999999987765322 2347777766543
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.5e-13 Score=153.56 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=112.5
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeE-------EEe---------ccccc-cccchhhHHHHHHHHHHHHh----
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFV-------KII---------SAESM-IGLHESTKCAQIVKVFEDAY---- 592 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i-------~v~---------~~~~l-~g~~~~~~~~~i~~~f~~a~---- 592 (745)
.+..+||+||||||||++|+++|+..++... ... .++.+ +......+...+|++.+.+.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 3445699999999999999999988765310 000 00000 00010123456777766554
Q ss_pred cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHH
Q 004550 593 KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTD 672 (745)
Q Consensus 593 ~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~ 672 (745)
.....|+||||+|+| +...+++|+..|+..+. .+.+|.+|+.+..+-+ .+++| +.+++|++++.+
T Consensus 117 ~gk~KViIIDEAh~L----------T~eAqNALLKtLEEPP~---~vrFILaTTe~~kLl~-TIlSR-Cq~f~fkpLs~e 181 (944)
T PRK14949 117 RGRFKVYLIDEVHML----------SRSSFNALLKTLEEPPE---HVKFLLATTDPQKLPV-TVLSR-CLQFNLKSLTQD 181 (944)
T ss_pred cCCcEEEEEechHhc----------CHHHHHHHHHHHhccCC---CeEEEEECCCchhchH-HHHHh-heEEeCCCCCHH
Confidence 345679999999997 36677888888876433 4555556777776655 33444 689999999999
Q ss_pred HHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 673 DAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 673 ~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
++...|++ .+...+++...++...+.|++|+++++++.+..
T Consensus 182 EI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala 226 (944)
T PRK14949 182 EIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 98887776 344445666777778899999999999987663
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=6.4e-13 Score=144.91 Aligned_cols=194 Identities=16% Similarity=0.241 Sum_probs=130.1
Q ss_pred ccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-----------
Q 004550 217 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----------- 285 (745)
Q Consensus 217 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~----------- 285 (745)
|++ |.|+++.++.+ ++++.....++ ..++.+.+.++||+||||+|||++|+++|+.+.+....
T Consensus 4 f~~--IiGq~~~~~~L-~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 4 WDD--LVGQEAVVAEL-RAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhh--ccChHHHHHHH-HHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 667 99999999988 88887764332 23444567789999999999999999999987543200
Q ss_pred ---EEccchhh--hh-ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHh
Q 004550 286 ---IVNGPEVL--SK-FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 359 (745)
Q Consensus 286 ---~v~~~~l~--~~-~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~ 359 (745)
.-+-+++. .. -..-.-..+|++++.+... |.. +...|+||||+|.+.+ ...+.||..
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~-p~~---~~~kViiIDead~m~~-------------~aanaLLk~ 140 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARR-PST---GRWRIVVIEDADRLTE-------------RAANALLKA 140 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhC-ccc---CCcEEEEEechhhcCH-------------HHHHHHHHH
Confidence 00001110 00 0011234578888877643 222 2356999999999842 234668888
Q ss_pred ccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCC
Q 004550 360 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 439 (745)
Q Consensus 360 ~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 439 (745)
|+.. ..+.++|.+|+.++.+.|.+++ |+. .+.|++|+.++..++|.... . + +......++..++|..
T Consensus 141 LEep--~~~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~----~-~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEEP--PPRTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---G----V-DPETARRAARASQGHI 207 (394)
T ss_pred hhcC--CCCCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---C----C-CHHHHHHHHHHcCCCH
Confidence 8743 3355566666668999999998 874 89999999998888776321 1 2 2344677899999988
Q ss_pred HHHHHHH
Q 004550 440 GAELEGV 446 (745)
Q Consensus 440 g~dl~~l 446 (745)
+..+.-+
T Consensus 208 ~~A~~l~ 214 (394)
T PRK07940 208 GRARRLA 214 (394)
T ss_pred HHHHHHh
Confidence 7665543
No 126
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.2e-13 Score=151.40 Aligned_cols=158 Identities=14% Similarity=0.222 Sum_probs=111.6
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC-----------------------------eEEEeccccccccchhhHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP-----------------------------FVKIISAESMIGLHESTKCAQI 584 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~-----------------------------~i~v~~~~~l~g~~~~~~~~~i 584 (745)
.+..+||+||+|+|||++|+.+|+.+++. ++.++.. ...+.+.+
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-------s~~gVDdI 109 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-------SNRGVDEM 109 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-------ccCCHHHH
Confidence 34567999999999999999999877651 1222111 11235567
Q ss_pred HHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccccccc
Q 004550 585 VKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAF 660 (745)
Q Consensus 585 ~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf 660 (745)
+++.+.+. .....|+||||+|+|. ....++||..|+..+ .++++|.+||.++.+.+ .+++|
T Consensus 110 ReLie~~~~~P~~gr~KViIIDEah~Ls----------~~AaNALLKTLEEPP---~~v~FILaTtep~kLlp-TIrSR- 174 (700)
T PRK12323 110 AQLLDKAVYAPTAGRFKVYMIDEVHMLT----------NHAFNAMLKTLEEPP---EHVKFILATTDPQKIPV-TVLSR- 174 (700)
T ss_pred HHHHHHHHhchhcCCceEEEEEChHhcC----------HHHHHHHHHhhccCC---CCceEEEEeCChHhhhh-HHHHH-
Confidence 77777654 3456899999999984 445667777766532 35566667777777766 34455
Q ss_pred ceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 661 SVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 661 ~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+..++|++++.+++.+.|++ .+...+++....+...+.|++|+++++++.+..
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 68999999998888777664 344445566677778899999999999887554
No 127
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.7e-13 Score=152.10 Aligned_cols=159 Identities=16% Similarity=0.255 Sum_probs=113.8
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFE 589 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f~ 589 (745)
.+..+||+||+|+|||++|+++|+..++. ++.++.. ...+.+.++++.+
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa-------s~~~VddiR~li~ 109 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA-------SRTKVEDTRELLD 109 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc-------ccCCHHHHHHHHH
Confidence 34456999999999999999999877652 1222111 1124456777766
Q ss_pred HHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEE
Q 004550 590 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 665 (745)
Q Consensus 590 ~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~ 665 (745)
.+. .+...|+||||+|+|. ....++|+..|+..+. .+.+|.+|+.++.+-+ .+++| +..++
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~Ls----------~~a~NALLKtLEEPp~---~v~FIL~Tt~~~kLl~-TI~SR-C~~~~ 174 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLKTLEEPPE---HVKFLLATTDPQKLPV-TILSR-CLQFH 174 (647)
T ss_pred HHHhhhhcCCCEEEEEechHhCC----------HHHHHHHHHHHHcCCC---CeEEEEecCCccccch-HHHhh-heEee
Confidence 653 3456799999999973 5677888888876533 5555556777776665 45566 78999
Q ss_pred cCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 666 VPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 666 ~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
|++++.+++...|++. +...+++....+...+.|++|+++++++.+...
T Consensus 175 f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 175 LKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS 227 (647)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999888877753 444455666677788999999999999877643
No 128
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=4.9e-13 Score=155.76 Aligned_cols=179 Identities=18% Similarity=0.292 Sum_probs=123.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHh-----cCCCeEEEEeccchh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAY-----KSPLSIIILDDIERL 607 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~-----~~~~~il~lDEid~l 607 (745)
....+++|+||||||||++|+++|+..+.+|+.+++... | .+.+++.++.+. .....+|||||||++
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--~------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L 121 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--G------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF 121 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--h------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC
Confidence 344689999999999999999999999999888765421 1 122344444331 134579999999987
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--CCCccccccccceEEEcCCCCHHHHHHHHHHcc---
Q 004550 608 LEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS--FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN--- 682 (745)
Q Consensus 608 ~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~--~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~--- 682 (745)
. ...+++|+..++. ..+++|++|+... .+++ .+.+| +..+.|++++.+++..++++..
T Consensus 122 n----------~~qQdaLL~~lE~-----g~IiLI~aTTenp~~~l~~-aL~SR-~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 122 N----------KAQQDALLPWVEN-----GTITLIGATTENPYFEVNK-ALVSR-SRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred C----------HHHHHHHHHHhcC-----ceEEEEEecCCChHhhhhh-Hhhcc-ccceecCCCCHHHHHHHHHHHHHHH
Confidence 3 4456677766543 3577777765432 3444 44456 5689999999999999998631
Q ss_pred --------CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 683 --------VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 683 --------~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
...+++....+...++|++|+++++++.+...+... ..+...|+.+++.+++.+
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~-----~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPD-----EDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC-----CCCceeccHHHHHHHHHH
Confidence 234556666677778999999999999987543210 112234788888887765
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=6.4e-13 Score=147.43 Aligned_cols=195 Identities=21% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccc-------------cccch---h-hHHHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESM-------------IGLHE---S-TKCAQIVKVFED 590 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l-------------~g~~~---~-~~~~~i~~~f~~ 590 (745)
..+.+++++||||||||++++.++... ++.++.+++...- .+... + ...+.+..+++.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 445678999999999999999998754 5778888765420 11000 0 112223333333
Q ss_pred Hh-cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--cccccc-ceEEEc
Q 004550 591 AY-KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAF-SVTYHV 666 (745)
Q Consensus 591 a~-~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf-~~~i~~ 666 (745)
.. ...+.||+|||+|.+.... ....+..|+..+.... +.++.+|+++|..+..+.. .+++|| ...+.|
T Consensus 133 l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f 204 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYF 204 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeec
Confidence 33 2456899999999986211 1234555555554432 2378888888877643321 334566 367999
Q ss_pred CCCCHHHHHHHHHHc------cCCCHHHHHHHHHHCC---CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHH
Q 004550 667 PTLKTDDAKKVLKQL------NVFAEEDVDSASEALN---DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 737 (745)
Q Consensus 667 p~~~~~~~~~Il~~~------~~~~~~d~~~~~~~~~---~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~ 737 (745)
++|+.+++.+|++.. ....+++..+.+.... .|++|.++.++..|...+.. .+...|+.+|+.+
T Consensus 205 ~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~-------~~~~~I~~~~v~~ 277 (394)
T PRK00411 205 PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER-------EGSRKVTEEDVRK 277 (394)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-------cCCCCcCHHHHHH
Confidence 999999999999863 1122344444444443 79999999999988776643 3567899999999
Q ss_pred HHHHH
Q 004550 738 CLQDM 742 (745)
Q Consensus 738 al~~~ 742 (745)
|++.+
T Consensus 278 a~~~~ 282 (394)
T PRK00411 278 AYEKS 282 (394)
T ss_pred HHHHH
Confidence 99865
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.50 E-value=3e-13 Score=136.52 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=115.9
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------eEEEeccccccccch-hhHHHHHHHHHHHH-----hc-CCCeEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------FVKIISAESMIGLHE-STKCAQIVKVFEDA-----YK-SPLSII 599 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------~i~v~~~~~l~g~~~-~~~~~~i~~~f~~a-----~~-~~~~il 599 (745)
....++|||||||||||+.|+++|.+...+ +...+.+ ...|.+. .++.+...++...- +. .++.|+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS-derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKii 133 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS-DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKII 133 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc-ccccccchhhhhcCHHHHhhccccccCCCCCcceEE
Confidence 456789999999999999999999887652 2222222 2334332 23333333322221 11 234799
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHH----
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK---- 675 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~---- 675 (745)
+|||.|.+. ...+.+|...|+..+ +.+.+|-.||..+.+-. .+.+| +..++|+++..+++.
T Consensus 134 IlDEcdsmt----------sdaq~aLrr~mE~~s---~~trFiLIcnylsrii~-pi~SR-C~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 134 ILDECDSMT----------SDAQAALRRTMEDFS---RTTRFILICNYLSRIIR-PLVSR-CQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred EEechhhhh----------HHHHHHHHHHHhccc---cceEEEEEcCChhhCCh-HHHhh-HHHhcCCCcchHHHHHHHH
Confidence 999999974 677888888888742 45666778888886655 23344 779999999975544
Q ss_pred HHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 676 KVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 676 ~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
.|+...+.-.+.+....+...++|+.|++++.++.+....
T Consensus 199 ~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 199 KIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 4444566777888888899999999999999999988743
No 131
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.6e-13 Score=150.32 Aligned_cols=189 Identities=16% Similarity=0.187 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEecc
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISA 569 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~ 569 (745)
+++++.+...+.. ...+..+||+||+|+|||++|+++|+..++. ++.++..
T Consensus 22 ~~v~~~L~~~~~~-----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa 96 (509)
T PRK14958 22 APVVRALSNALDQ-----QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA 96 (509)
T ss_pred HHHHHHHHHHHHh-----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc
Confidence 4445555444432 2334567999999999999999999877542 2222211
Q ss_pred ccccccchhhHHHHHHHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 004550 570 ESMIGLHESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTT 645 (745)
Q Consensus 570 ~~l~g~~~~~~~~~i~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~tt 645 (745)
...+.+.++++.+.+. .....|+||||+|+|. ....++|+..|+..++ .+.+|.+|
T Consensus 97 -------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls----------~~a~naLLk~LEepp~---~~~fIlat 156 (509)
T PRK14958 97 -------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS----------GHSFNALLKTLEEPPS---HVKFILAT 156 (509)
T ss_pred -------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC----------HHHHHHHHHHHhccCC---CeEEEEEE
Confidence 1234556788777653 2356799999999984 4456788888887543 34445555
Q ss_pred CCCCCCCccccccccceEEEcCCCCHHHHHHH----HHHccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchh
Q 004550 646 SEVSFLDSVGICDAFSVTYHVPTLKTDDAKKV----LKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAE 721 (745)
Q Consensus 646 n~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~I----l~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~ 721 (745)
+.+..+-+. +++| +..++|.+++.+++... ++..+...+++....+...++|++|.++++++.+....
T Consensus 157 td~~kl~~t-I~SR-c~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~------ 228 (509)
T PRK14958 157 TDHHKLPVT-VLSR-CLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYG------ 228 (509)
T ss_pred CChHhchHH-HHHH-hhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC------
Confidence 666655543 5555 47899999998877664 44445444555556666778999999999998765432
Q ss_pred hcccCCCCccHhHHHHHHH
Q 004550 722 AIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 722 ~~~~~~~~I~~~~~~~al~ 740 (745)
...|+.+++.+.+.
T Consensus 229 -----~~~It~~~V~~~lg 242 (509)
T PRK14958 229 -----NGKVLIADVKTMLG 242 (509)
T ss_pred -----CCCcCHHHHHHHHC
Confidence 13477777666543
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=5.7e-13 Score=147.98 Aligned_cols=205 Identities=20% Similarity=0.323 Sum_probs=129.8
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 288 (745)
+.++|++.-+|.-........+++...+ + ....+++||||||+|||+|++++++++. +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6889999755554443333333333221 1 2235699999999999999999999873 34566788
Q ss_pred cchhhhhccchhHHH-HHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCC
Q 004550 289 GPEVLSKFVGETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN 367 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~-i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~ 367 (745)
+.++...+....... +..+.+.... +.+|+|||+|.+..+.. .. ..++..++.....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~dlLiiDDi~~l~~~~~--------~~---~~l~~~~n~~~~~~ 232 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRS----------VDLLLIDDIQFLAGKER--------TQ---EEFFHTFNALHENG 232 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh----------CCEEEEehhhhhcCCHH--------HH---HHHHHHHHHHHHCC
Confidence 887766544332211 1122121111 34999999999863321 11 22333333222233
Q ss_pred cEEEEEEeCCCCC---CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHH
Q 004550 368 NVLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 442 (745)
Q Consensus 368 ~v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 442 (745)
..++|+++..|.. +++.+++ ||. ..++|++|+.++|..|++..++.... ..++..++.+|+...+ +.++
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~-~~r~ 306 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRS-NVRE 306 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCC-CHHH
Confidence 4455655555554 5688887 875 47999999999999999998876431 2345568888988875 7888
Q ss_pred HHHHHHHHHHHHH
Q 004550 443 LEGVAKSAVSFAL 455 (745)
Q Consensus 443 l~~l~~~A~~~a~ 455 (745)
|++++.....++.
T Consensus 307 l~~~l~~l~~~a~ 319 (405)
T TIGR00362 307 LEGALNRLLAYAS 319 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 9888887665554
No 133
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-13 Score=150.06 Aligned_cols=162 Identities=25% Similarity=0.328 Sum_probs=120.3
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh--------
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-------- 293 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~-------- 293 (745)
=-|+++.+++|+ +.++-.. -.|-...+-++|+||||+|||+++|.||+.++ +.|+.++...+.
T Consensus 413 HYgm~dVKeRIL-EfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-RkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 413 HYGMEDVKERIL-EFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALN-RKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccchHHHHHHHH-HHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-CceEEEeccccccHHhhccc
Confidence 568888888884 4443321 12334566789999999999999999999995 555554432222
Q ss_pred -hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc--------
Q 004550 294 -SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------- 364 (745)
Q Consensus 294 -~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-------- 364 (745)
..|+|....++-+-+....-..| +++|||||.+.. +...+ --..||+.+|.-.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP---------liLiDEvDKlG~--g~qGD-------PasALLElLDPEQNanFlDHY 545 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP---------LILIDEVDKLGS--GHQGD-------PASALLELLDPEQNANFLDHY 545 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc---------eEEeehhhhhCC--CCCCC-------hHHHHHHhcChhhccchhhhc
Confidence 27999999888888887776654 999999999972 22221 1134566555321
Q ss_pred -----CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHH
Q 004550 365 -----SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 413 (745)
Q Consensus 365 -----~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 413 (745)
..++|+||+|.|..+.|+++|+. |++ .|+++-+..++...|.+.|+
T Consensus 546 LdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 546 LDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 23579999999999999999998 987 79999999999999999886
No 134
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=4.6e-13 Score=150.56 Aligned_cols=224 Identities=19% Similarity=0.312 Sum_probs=141.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 288 (745)
+.++|++.-+|.-....-...+++...+ | ....+++||||||||||+|++++++++. +..+.+++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 7889999755544443322323333221 1 2235699999999999999999999874 23466788
Q ss_pred cchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc
Q 004550 289 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 368 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 368 (745)
+.++...+..........-|..... .+.+|+|||+|.+..+.. ....++..++.....+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~ 245 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR---------SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK 245 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh---------cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC
Confidence 8887766544432211122222111 145999999999863321 11223333333223344
Q ss_pred EEEEEEeCCCCC---CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHH
Q 004550 369 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 443 (745)
Q Consensus 369 v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 443 (745)
.++|+++..|.. +++.+++ ||. ..+++.+|+.++|.+|++..+.... ...++..++.+|+.+.| +.++|
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~---~~l~~e~l~~ia~~~~~-~~R~l 319 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG---IDLPDEVLEFIAKNITS-NVREL 319 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHcCcCC-CHHHH
Confidence 466666555554 6788988 885 5799999999999999999887532 12344558888888876 78888
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 444 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 444 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
++++.....++... ...++.+....++...
T Consensus 320 ~~~l~~l~~~~~~~--------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 320 EGALNRLIAYASLT--------------GKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHhh--------------CCCCCHHHHHHHHHHh
Confidence 88888776555431 1246777777777754
No 135
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=2.3e-13 Score=145.81 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=99.6
Q ss_pred CCeEEEEeccchhhhcCC-CCCcchH-HHHHHHHHHHhcCC-------CCCCcEEEEEecC----CCCCCCccccccccc
Q 004550 595 PLSIIILDDIERLLEYVP-IGPRFSN-IISQTMLVLLKRLP-------PKGKKLLVIGTTS----EVSFLDSVGICDAFS 661 (745)
Q Consensus 595 ~~~il~lDEid~l~~~~~-~g~~~~~-~~~~~Ll~~l~~~~-------~~~~~v~vI~ttn----~~~~l~~~~l~~rf~ 661 (745)
..+||||||||+|+...+ .|..+|. -+++.||.++++.. -...++++||+-. .|+.|-| .+.+||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIP-El~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIP-ELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccH-HHhCccc
Confidence 346999999999996643 3444544 48999999998832 1234677776542 3433434 5669999
Q ss_pred eEEEcCCCCHHHHHHHHHH--------c----------cCCCHHHHHHHHHHC-------CCCcHHHHHHHHHHHHcccc
Q 004550 662 VTYHVPTLKTDDAKKVLKQ--------L----------NVFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 662 ~~i~~p~~~~~~~~~Il~~--------~----------~~~~~~d~~~~~~~~-------~~~~ir~ll~~l~~a~~~~~ 716 (745)
.++.+.+++.+++..||.. + ..|+++.+.+++... .+.++|.|..+++..-....
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 9999999999999999964 0 146676666555443 38899999999998866543
Q ss_pred CCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 717 GGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 717 ~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
-. +.+.....-.|+.+.+...+.+++
T Consensus 408 Fe-~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 408 FE-APDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred cc-CCCCCCCEEEECHHHHHHHHHHHH
Confidence 11 011111224588888888887664
No 136
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=7.4e-13 Score=150.28 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=135.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 286 (745)
.-+|++ |.|.++.++.| +.++... +.+..+||+||+|||||++|+++++.+++.....
T Consensus 12 PqtFdE--VIGQe~Vv~~L-~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 12 PKDFAS--LVGQEHVVRAL-THALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 567888 89999998887 6665432 2234689999999999999999999986421100
Q ss_pred Eccchhhh----------hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 287 VNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 287 v~~~~l~~----------~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
-+|..+.. .........++++++.+... +.. ....|+||||+|.|. ....+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~-P~~---gr~KVIIIDEah~LT-------------~~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA-PVD---ARFKVYMIDEVHMLT-------------NHAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhc-ccc---CCceEEEEeChhhCC-------------HHHHHHH
Confidence 00111100 00011234567777665432 221 124599999999984 2346778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+. ...++.||.+||.++.|.+.+++ |+. .+.|..++.++..+.|+..+++.. ...++..+..|++.+.
T Consensus 140 LKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~Eg---I~id~eAL~lIA~~A~ 211 (830)
T PRK07003 140 LKTLEE--PPPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEER---IAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHh--cCCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 887774 34588999999999999999998 874 789999999999988887765432 1234556788888988
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.++..+++..+..+
T Consensus 212 G-smRdALsLLdQAia~ 227 (830)
T PRK07003 212 G-SMRDALSLTDQAIAY 227 (830)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 556666676666543
No 137
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.7e-12 Score=141.75 Aligned_cols=198 Identities=18% Similarity=0.236 Sum_probs=132.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 286 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+||+||||||||++|+++|+.+.+.....
T Consensus 12 P~~~~~--iiGq~~~~~~l-~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 12 PQYFRD--IIGQKHIVTAI-SNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred CCchhh--ccChHHHHHHH-HHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 467888 89999998887 6665432 2234689999999999999999999985321100
Q ss_pred Eccch--------hhh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 287 VNGPE--------VLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 287 v~~~~--------l~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
.+|.+ +.. .........++++.+.+... |.. +...|++|||+|.+. ....+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~-p~~---~~~kviIIDEa~~l~-------------~~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYS-PSK---SRFKVYLIDEVHMLS-------------RHSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcC-ccc---CCceEEEEEChhhcC-------------HHHHHHH
Confidence 01111 110 00002234566666655422 221 224599999999883 2345567
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..++. ....+.+|.+|+.++.+.+.+++ |+. .+++++|+.++..++++..+++... ..++..+..++..+.
T Consensus 140 Lk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~ 211 (363)
T PRK14961 140 LKTLEE--PPQHIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777774 33467788888888889999988 764 7899999999999999887765331 234456778888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVS 452 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~ 452 (745)
| +.+++.++++.+..
T Consensus 212 G-~~R~al~~l~~~~~ 226 (363)
T PRK14961 212 G-SMRDALNLLEHAIN 226 (363)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 67777777776654
No 138
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.3e-13 Score=149.75 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=134.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
.-+|++ |.|.+..++.| ++++... +.+..+||+||+|||||++|+.+|+.+++...-
T Consensus 12 PqtFdd--VIGQe~vv~~L-~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 12 PRDFTT--LVGQEHVVRAL-THALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 567888 99999998887 6666543 223468999999999999999999999752100
Q ss_pred -EEccc-----------hhhh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhH
Q 004550 286 -IVNGP-----------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 351 (745)
Q Consensus 286 -~v~~~-----------~l~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 351 (745)
.-.|. +++. .........+|++.+.+... +..+ ...|+||||+|.|. ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~-P~~g---r~KViIIDEah~Ls-------------~~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA-PTAG---RFKVYMIDEVHMLT-------------NH 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc-hhcC---CceEEEEEChHhcC-------------HH
Confidence 00011 1110 00011234566666655432 2222 24599999999984 34
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHH
Q 004550 352 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 431 (745)
Q Consensus 352 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~l 431 (745)
..|.||..|+. ...+++||.+||.++.|.+.+++ |+. .+.|..++.++..+.|+..+..... ..++..+..+
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~I 211 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLL 211 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 56788888884 34578999999999999999998 874 7899999999888888876653221 1233446778
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 004550 432 AARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 432 a~~t~g~sg~dl~~l~~~A~~ 452 (745)
++.++| +.++..+++..+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888876 66676677666543
No 139
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=6.1e-13 Score=151.46 Aligned_cols=222 Identities=19% Similarity=0.237 Sum_probs=138.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 284 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~ 284 (745)
..+|++ +-|.+..++.+ +.+... +.+.++||+||||||||++||++++... ..++
T Consensus 61 p~~f~~--iiGqs~~i~~l-~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 61 PKSFDE--IIGQEEGIKAL-KAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred cCCHHH--eeCcHHHHHHH-HHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 467888 88899988888 443321 2346899999999999999999987531 2356
Q ss_pred EEEccchh--hh-----hccchhHHHH---HHHHHHHHhhccccC--CCCCeEEEEEccchhhhhcCCCCCCCCcchhHH
Q 004550 285 KIVNGPEV--LS-----KFVGETEKNI---RDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 352 (745)
Q Consensus 285 ~~v~~~~l--~~-----~~~g~~e~~i---~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 352 (745)
+.++|... -. ...|.....+ ...|..+....+..| ......+|||||+|.|.+. .
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~ 191 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-------------Q 191 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-------------H
Confidence 67776531 01 0011000000 000000000000000 0111249999999998532 3
Q ss_pred HHHHHHhccCc--------------------------cCCCcEEEEEE-eCCCCCCChhhhCCCCccceEEecCCCHHHH
Q 004550 353 VNQLLTKIDGV--------------------------ESLNNVLLIGM-TNRKDMLDEALLRPGRLEVQVEISLPDENGR 405 (745)
Q Consensus 353 ~~~LL~~~d~~--------------------------~~~~~v~vI~~-tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r 405 (745)
.+.||..|+.- ....++.+|++ |+.++.++|++++ |+. .+.+++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 34444443210 01124556655 5679999999998 875 788999999999
Q ss_pred HHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHH
Q 004550 406 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 485 (745)
Q Consensus 406 ~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 485 (745)
.+|++..+++... ..++..++.++..+. +++++.++++.|+..|..+ ....|+.+|+..++.
T Consensus 269 ~~Il~~~a~k~~i---~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 269 KEIAKNAAEKIGI---NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-------------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHcCC---CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-------------CCcEEcHHHHHHHhC
Confidence 9999998876542 123444667777664 7899999999999877653 234699999999886
No 140
>PRK06893 DNA replication initiation factor; Validated
Probab=99.47 E-value=3.1e-13 Score=137.87 Aligned_cols=178 Identities=16% Similarity=0.222 Sum_probs=119.4
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 612 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~ 612 (745)
..++||||||||||++++++|++. +.....+...+ . . ....++++... ...+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~-~----~----~~~~~~~~~~~--~~dlLilDDi~~~~~~-- 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-S----Q----YFSPAVLENLE--QQDLVCLDDLQAVIGN-- 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH-h----h----hhhHHHHhhcc--cCCEEEEeChhhhcCC--
Confidence 468999999999999999999764 22332222111 0 0 01123333332 3479999999997521
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--cccccc--ceEEEcCCCCHHHHHHHHHH----ccCC
Q 004550 613 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAF--SVTYHVPTLKTDDAKKVLKQ----LNVF 684 (745)
Q Consensus 613 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf--~~~i~~p~~~~~~~~~Il~~----~~~~ 684 (745)
......|+.+++.....+..++|++++..|..++.. .+++|+ ...+.+++|+.+++.+|+++ .+..
T Consensus 107 ------~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 107 ------EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred ------hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 223345666666554444456677666667766532 566665 47899999999999999995 3456
Q ss_pred CHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 685 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 685 ~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.++|+...+....++++|.++.+++.....+- .....||...+.+++.
T Consensus 181 l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~--------~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 181 LSDEVANFLLKRLDRDMHTLFDALDLLDKASL--------QAQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHH--------hcCCCCCHHHHHHHhc
Confidence 77888888888889999999999987643221 1224699999888764
No 141
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.47 E-value=1e-12 Score=134.65 Aligned_cols=220 Identities=24% Similarity=0.350 Sum_probs=139.6
Q ss_pred CcccccCccccHHHHHH--HHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 215 FNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
-+++| +.|.++.+.+ +++.+++.- .-.+++||||||||||+|||.|+.......+..|..+..
T Consensus 135 ktL~d--yvGQ~hlv~q~gllrs~ieq~-------------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 135 KTLDD--YVGQSHLVGQDGLLRSLIEQN-------------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred chHHH--hcchhhhcCcchHHHHHHHcC-------------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 35566 6676664432 334444332 223599999999999999999999876555544443322
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
...-+.+|.+|+.+++.....++ -.||||||||.+.+..+ ..+|-.++ .+.+++|
T Consensus 200 -----~a~t~dvR~ife~aq~~~~l~kr---kTilFiDEiHRFNksQQ-------------D~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 200 -----NAKTNDVRDIFEQAQNEKSLTKR---KTILFIDEIHRFNKSQQ-------------DTFLPHVE----NGDITLI 254 (554)
T ss_pred -----ccchHHHHHHHHHHHHHHhhhcc---eeEEEeHHhhhhhhhhh-------------hcccceec----cCceEEE
Confidence 23456789999999887544333 34999999999865432 23554433 4789999
Q ss_pred EEe--CCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCC----------CCCcccHHHHHHHcCCCCH
Q 004550 373 GMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF----------LAPDVNLQELAARTKNYSG 440 (745)
Q Consensus 373 ~~t--n~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~----------l~~~~~l~~la~~t~g~sg 440 (745)
|+| |+.-.+..+|++ |+. ++.+.....+....||......+..... ...+.-++.++..++|-..
T Consensus 255 GATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 988 444458999998 755 5667777788888888764432211110 1233347788999998777
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 441 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 441 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
+.|..|--.+.+.+. |.- ......++.+|....+..-
T Consensus 332 ~aLN~Lems~~m~~t-r~g---------~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 332 AALNALEMSLSMFCT-RSG---------QSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHHHh-hcC---------CcccceecHHHHHHHHhhc
Confidence 766554333333332 211 1234567888888877654
No 142
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.47 E-value=1.5e-12 Score=147.94 Aligned_cols=224 Identities=18% Similarity=0.228 Sum_probs=140.2
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc------C---CC
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN------G---ME 283 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~------~---~~ 283 (745)
+++.-+. +.|-++|+++| ..++...+. |-.+...++++|+||||||++++.+.+++. . ..
T Consensus 750 ~DYVPD~--LPhREeEIeeL-asfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~ 818 (1164)
T PTZ00112 750 LDVVPKY--LPCREKEIKEV-HGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFN 818 (1164)
T ss_pred cccCCCc--CCChHHHHHHH-HHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCce
Confidence 4444455 89999999999 555533221 222333356999999999999999988772 1 23
Q ss_pred cEEEccchhhhhc----------------cc-hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCC
Q 004550 284 PKIVNGPEVLSKF----------------VG-ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGT 346 (745)
Q Consensus 284 ~~~v~~~~l~~~~----------------~g-~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~ 346 (745)
++.+||..+...+ .| .+.+.+..+|....... ....||+|||||.|...
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~------r~v~IIILDEID~L~kK-------- 884 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDN------RNVSILIIDEIDYLITK-------- 884 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhccc------ccceEEEeehHhhhCcc--------
Confidence 4578885433211 01 12234455555442211 23569999999999743
Q ss_pred cchhHHHHHHHHhccCccCCCcEEEEEEeCC---CCCCChhhhCCCCccc-eEEecCCCHHHHHHHHHHHHccccccCCC
Q 004550 347 GVHDSIVNQLLTKIDGVESLNNVLLIGMTNR---KDMLDEALLRPGRLEV-QVEISLPDENGRLQILQIHTNKMKENSFL 422 (745)
Q Consensus 347 ~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~---~~~id~al~r~gRf~~-~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l 422 (745)
.+.++..|+.... .....+.|||++|. ++.++|.+++ ||.. ++.|++++.+++.+||+..+.... . .
T Consensus 885 --~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~--g-V 955 (1164)
T PTZ00112 885 --TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK--E-I 955 (1164)
T ss_pred --HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC--C-C
Confidence 2344555555432 23457999999987 4557888887 6543 478899999999999999887542 1 3
Q ss_pred CCcccHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 423 APDVNLQELAARTKNYSGAELE---GVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 423 ~~~~~l~~la~~t~g~sg~dl~---~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
.++..++.+|+.....+ +|++ .+|+.|+..+ ....|+.+|+..|+.++
T Consensus 956 LdDdAIELIArkVAq~S-GDARKALDILRrAgEik----------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 956 IDHTAIQLCARKVANVS-GDIRKALQICRKAFENK----------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred CCHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHhhc----------------CCCccCHHHHHHHHHHH
Confidence 34445777777554332 2433 3555554321 11268889998888765
No 143
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.46 E-value=5.5e-12 Score=147.19 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=105.5
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccccchhhH---HHHHHHHHHHHhcCCCeEEEEeccc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHESTK---CAQIVKVFEDAYKSPLSIIILDDIE 605 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g~~~~~~---~~~i~~~f~~a~~~~~~il~lDEid 605 (745)
....+|+.||+.+|||++...+|.+.|..||+++..+. ++|.+.... ...-..++-.|-+.. -+|+|||..
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 34568999999999999999999999999999987764 355432211 111123444444333 489999986
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHhcC-----CC------CCCcEEEEEecCCCCCCCc-c----ccccccceEEEcCCC
Q 004550 606 RLLEYVPIGPRFSNIISQTMLVLLKRL-----PP------KGKKLLVIGTTSEVSFLDS-V----GICDAFSVTYHVPTL 669 (745)
Q Consensus 606 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~-----~~------~~~~v~vI~ttn~~~~l~~-~----~l~~rf~~~i~~p~~ 669 (745)
-.. .-++.+|..+|+.- |+ +....+++||-|.|....- . .+|.||- .++|...
T Consensus 966 LAp----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl-E~hFddi 1034 (4600)
T COG5271 966 LAP----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL-EMHFDDI 1034 (4600)
T ss_pred cCc----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH-hhhcccC
Confidence 432 34777888877762 11 2235678888888775432 1 3445665 6788888
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHH
Q 004550 670 KTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKK 703 (745)
Q Consensus 670 ~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ 703 (745)
..+|++.||.......+.-...+++-+.+.++|+
T Consensus 1035 pedEle~ILh~rc~iapSyakKiVeVyr~Ls~rR 1068 (4600)
T COG5271 1035 PEDELEEILHGRCEIAPSYAKKIVEVYRGLSSRR 1068 (4600)
T ss_pred cHHHHHHHHhccCccCHHHHHHHHHHHHHhhhhh
Confidence 8999999999877666665555555544333333
No 144
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.5e-12 Score=144.08 Aligned_cols=200 Identities=19% Similarity=0.242 Sum_probs=140.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
+-+|++ +.|.+..++.+ +.++..- +.+.++||+||||||||++|+++|+.+++....
T Consensus 17 P~~f~d--liGq~~vv~~L-~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 17 PSNFAE--LQGQEVLVKVL-SYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 567888 99999998877 6655432 234579999999999999999999999643210
Q ss_pred ---EEccchhhhh----------ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHH
Q 004550 286 ---IVNGPEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 352 (745)
Q Consensus 286 ---~v~~~~l~~~----------~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 352 (745)
.-+|..+... ........++++++.+... |..+ ...|+||||+|.+. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~-P~~~---~~KVvIIDEa~~Ls-------------~~a 144 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK-PLQG---KHKIFIIDEVHMLS-------------KGA 144 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc-cccC---CcEEEEEEChhhcC-------------HHH
Confidence 0011111110 0112345678888777543 3322 24599999999884 234
Q ss_pred HHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHH
Q 004550 353 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA 432 (745)
Q Consensus 353 ~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la 432 (745)
++.|+..++. ....+++|++|+.++.+.+.+++ |+. .+++..++.++...+++..+++... ..++..++.++
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia 216 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 6677777773 34578888888888999999988 774 7899999999999999988765431 23445578889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 004550 433 ARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 433 ~~t~g~sg~dl~~l~~~A~~~a 454 (745)
..+.| +.+++.++++.+..++
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhh
Confidence 88876 7888888888776553
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.2e-12 Score=146.71 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC--------------------------eEEE
Q 004550 513 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP--------------------------FVKI 566 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~--------------------------~i~v 566 (745)
.+++.+.+...+.. .+.+..+||+||+|||||++|+++|+...+. ++.+
T Consensus 18 q~~i~~~L~~~i~~-----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 18 QEHVTEPLSSALDA-----GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred cHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 34455554444332 2334457999999999999999999876531 1111
Q ss_pred eccccccccchhhHHHHHHHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEE
Q 004550 567 ISAESMIGLHESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVI 642 (745)
Q Consensus 567 ~~~~~l~g~~~~~~~~~i~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI 642 (745)
+.. + ....+.++++.+.+. .+...|+||||+|.|. ....++|+..|+..+. .+++|
T Consensus 93 daa------s-~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------~~A~NALLK~LEEpp~---~~~fI 152 (584)
T PRK14952 93 DAA------S-HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------TAGFNALLKIVEEPPE---HLIFI 152 (584)
T ss_pred ccc------c-ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------HHHHHHHHHHHhcCCC---CeEEE
Confidence 111 1 113456666655553 2456799999999974 4577788888876533 55666
Q ss_pred EecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCC
Q 004550 643 GTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGG 718 (745)
Q Consensus 643 ~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~ 718 (745)
.+|+.++.+.+ .+++| +..++|.+++.+++.+.+.+ .+...+++...++...++|++|.++++++.+....
T Consensus 153 L~tte~~kll~-TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~--- 227 (584)
T PRK14952 153 FATTEPEKVLP-TIRSR-THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA--- 227 (584)
T ss_pred EEeCChHhhHH-HHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc---
Confidence 66677665555 34566 78999999998887766654 45445666777778889999999999999876543
Q ss_pred chhhcccCCCCccHhHHHHHH
Q 004550 719 AAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 719 ~~~~~~~~~~~I~~~~~~~al 739 (745)
+...|+.+++.+.+
T Consensus 228 -------~~~~It~~~v~~ll 241 (584)
T PRK14952 228 -------ADTHVTYQRALGLL 241 (584)
T ss_pred -------CCCCcCHHHHHHHH
Confidence 22457776666553
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.46 E-value=1.4e-12 Score=131.62 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=124.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc-----EEEc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-----KIVN 288 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~-----~~v~ 288 (745)
+-+|++ +.|.+..++-+ +.++..+..+ ++|||||||||||+.|+++|+++++... ...|
T Consensus 32 Pkt~de--~~gQe~vV~~L-~~a~~~~~lp-------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 32 PKTFDE--LAGQEHVVQVL-KNALLRRILP-------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred CCcHHh--hcchHHHHHHH-HHHHhhcCCc-------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 457888 99999988877 6666553322 5999999999999999999999976322 2234
Q ss_pred cchhhhhccchhHHHHHHHHHHHHhhcc-ccCCCCCe-EEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCC
Q 004550 289 GPEVLSKFVGETEKNIRDLFADAENDQR-TRGDQSDL-HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL 366 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~i~~~f~~a~~~~~-~~~~~~~p-~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~ 366 (745)
.++..+..++ ..++ +-|+......+ ..+..+.| .|++|||+|.+. ...++.|...|+.. .
T Consensus 96 aSderGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------sdaq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 96 ASDERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------SDAQAALRRTMEDF--S 157 (346)
T ss_pred ccccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-------------HHHHHHHHHHHhcc--c
Confidence 4443333211 1111 22333332221 22233333 799999999985 34566788888853 3
Q ss_pred CcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 004550 367 NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 446 (745)
Q Consensus 367 ~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 446 (745)
..+.+|..||..+.|...+.+ |.. .+.|+....+...+.|+....+-.. -.++..+..++..++| +-++-...
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~G-dLR~Ait~ 230 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDG-DLRRAITT 230 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 578888899999999999988 876 4566666666666666655543221 1234457778888877 33333334
Q ss_pred HHHH
Q 004550 447 AKSA 450 (745)
Q Consensus 447 ~~~A 450 (745)
++.+
T Consensus 231 Lqsl 234 (346)
T KOG0989|consen 231 LQSL 234 (346)
T ss_pred HHHh
Confidence 4433
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=9.2e-13 Score=154.17 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=129.6
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhcCCCeEEEEe
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIILD 602 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~~~~~il~lD 602 (745)
...++||+||||||||++|+.+|... +..++.++....+.| .+.++.++.++++|+.+.+..++|||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 34677999999999999999999652 444555544443444 3456677789999998888888999999
Q ss_pred ccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHHHH
Q 004550 603 DIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKKV 677 (745)
Q Consensus 603 Eid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~I 677 (745)
|||.|.+.+.... ....+.+.|...+. ...+.+||+|+..+. .|+ .+.+||. .|++++|+.++...|
T Consensus 286 EIh~L~g~g~~~~-g~~d~~nlLkp~L~-----~g~i~vIgATt~~E~~~~~~~D~-AL~rRFq-~I~v~ePs~~~~~~I 357 (758)
T PRK11034 286 EIHTIIGAGAASG-GQVDAANLIKPLLS-----SGKIRVIGSTTYQEFSNIFEKDR-ALARRFQ-KIDITEPSIEETVQI 357 (758)
T ss_pred cHHHHhccCCCCC-cHHHHHHHHHHHHh-----CCCeEEEecCChHHHHHHhhccH-HHHhhCc-EEEeCCCCHHHHHHH
Confidence 9999986553211 12233444444443 247899999998763 455 5567996 899999999999999
Q ss_pred HHHc--------c-CCCHHHHHHHHHHCC-----CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 678 LKQL--------N-VFAEEDVDSASEALN-----DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 678 l~~~--------~-~~~~~d~~~~~~~~~-----~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
|+.. + .++++.+..++.-.. ..-..+++.+++.|....... . .......|+.+|+.+.+.+
T Consensus 358 L~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~--~-~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM--P-VSKRKKTVNVADIESVVAR 432 (758)
T ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC--c-ccccccccChhhHHHHHHH
Confidence 9953 2 234444444333222 222347888888876533210 0 0112345888888877754
No 148
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=3.2e-12 Score=130.42 Aligned_cols=162 Identities=10% Similarity=0.104 Sum_probs=101.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
..++||||||||||+|++++|+++. +....+++..+. .....++++... ...+|+|||++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~----------~~dlLilDDi~ 101 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE----------QQDLVCLDDLQ 101 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc----------cCCEEEEeChh
Confidence 3589999999999999999998862 233344443221 111112222222 13599999999
Q ss_pred hhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc-EEEEEEeCCCCCC---ChhhhCCCCccceEEecCCCHHHHHHHH
Q 004550 334 AICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN-VLLIGMTNRKDML---DEALLRPGRLEVQVEISLPDENGRLQIL 409 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~-v~vI~~tn~~~~i---d~al~r~gRf~~~i~i~~Pd~~~r~~Il 409 (745)
.+.... ..... |+..++.....+. +++++++..|..+ .+.++++.++...+.++.|+.++|.+|+
T Consensus 102 ~~~~~~--------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 102 AVIGNE--------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred hhcCCh--------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 986322 11222 3333333333333 4455555666655 4889885555678999999999999999
Q ss_pred HHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 004550 410 QIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 450 (745)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 450 (745)
+.+..... ...++..++.|++...| +.+.+.+++...
T Consensus 171 ~~~a~~~~---l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRG---IELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcC---CCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 98775332 12345557888888875 667777666654
No 149
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2e-12 Score=147.62 Aligned_cols=192 Identities=20% Similarity=0.245 Sum_probs=134.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+||+||+|||||++|+.+|+.+++..
T Consensus 12 P~~f~d--ivGQe~vv~~L-~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 12 PQTFAE--VVGQEHVLTAL-ANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 467888 89999998877 6666542 1233589999999999999999999986531
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+++.+ ......+|++.+.+... +..| ...|+||||+|.|. .
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~-p~~g---~~KV~IIDEah~Ls-------------~ 133 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYA-PARG---RFKVYLIDEVHMLS-------------R 133 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhh-hhcC---CCEEEEEechHhCC-------------H
Confidence 11122111 01234566666655432 2222 24599999999984 3
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.||..|+. ...++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..++... ...++..+..
T Consensus 134 ~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~ 205 (647)
T PRK07994 134 HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQL 205 (647)
T ss_pred HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHH
Confidence 456778888874 44578888889999999999998 85 5899999999999988887765332 1234456778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~ 452 (745)
++..+.| +.++..+++..+..
T Consensus 206 Ia~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 206 LARAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 8888877 66677777766553
No 150
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.2e-12 Score=145.28 Aligned_cols=174 Identities=17% Similarity=0.211 Sum_probs=116.6
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC------------------------CeEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
+.+..+||+||+|+|||++|+.+|+...+ .++.++... ....+.++++.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-------~~gvd~ir~ii 108 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-------RTGVEETKEIL 108 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-------ccCHHHHHHHH
Confidence 34456899999999999999999986543 122221111 11234566666
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. +...|+||||+|++. ....+.|+..|+..+. .+.+|.+|+.+..+-+. +++| +..+
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls----------~~a~naLLK~LEepp~---~v~fIL~Ttd~~kil~t-I~SR-c~~~ 173 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLS----------KQSFNALLKTLEEPPE---YVKFILATTDYHKIPVT-ILSR-CIQL 173 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhcc----------HHHHHHHHHHHhcCCC---CceEEEEECChhhhhhh-HHHh-eeeE
Confidence 65542 356799999999873 5577788888886532 34444455555555543 4455 5899
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+|.+++.+++...+++ .+...+++....+...++|++|++++.++.+.... + ..|+.+++.+++
T Consensus 174 ~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~----------~-~~It~~~V~~~l 241 (546)
T PRK14957 174 HLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFC----------G-GELKQAQIKQML 241 (546)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------c-CCCCHHHHHHHH
Confidence 9999998888776665 34445566666777788999999999999877543 1 346666666543
No 151
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.45 E-value=2.1e-12 Score=131.75 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=121.7
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
...+|++.-.|+-+..++.+ +++.. ...+.+++|+||||||||++|+++++.+. +..+.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l-~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAAL-RQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CchhhcCcCcCCcHHHHHHH-HHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 46778875435666666666 55432 13456899999999999999999998873 3456778877
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
.+.... ..++..... ..+|+|||+|.+.... .....+..+++.+ ...+..+
T Consensus 76 ~~~~~~--------~~~~~~~~~----------~~lLvIDdi~~l~~~~--------~~~~~L~~~l~~~---~~~~~~i 126 (226)
T TIGR03420 76 ELAQAD--------PEVLEGLEQ----------ADLVCLDDVEAIAGQP--------EWQEALFHLYNRV---REAGGRL 126 (226)
T ss_pred HHHHhH--------HHHHhhccc----------CCEEEEeChhhhcCCh--------HHHHHHHHHHHHH---HHcCCeE
Confidence 765322 222322211 2399999999984211 0122222233322 2222334
Q ss_pred EEEEeCCCCCC---ChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 004550 371 LIGMTNRKDML---DEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 371 vI~~tn~~~~i---d~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 445 (745)
++.++..+..+ ++.+.+ |+ ...+.+|+|+.+++..+++.+..+... ..++..+..|++.+ +-+.+++.+
T Consensus 127 Iits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~-~gn~r~L~~ 200 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHG-SRDMGSLMA 200 (226)
T ss_pred EEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhc-cCCHHHHHH
Confidence 44333344333 277776 55 468999999999999999877653321 13444577888864 458899999
Q ss_pred HHHHHHHHHHH
Q 004550 446 VAKSAVSFALN 456 (745)
Q Consensus 446 l~~~A~~~a~~ 456 (745)
+++.+...+..
T Consensus 201 ~l~~~~~~~~~ 211 (226)
T TIGR03420 201 LLDALDRASLA 211 (226)
T ss_pred HHHHHHHHHHH
Confidence 99887765544
No 152
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=2.9e-12 Score=137.31 Aligned_cols=182 Identities=27% Similarity=0.397 Sum_probs=127.0
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhh-CCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-hccc-
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKL-GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG- 298 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~-g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g- 298 (745)
|-|.++.++.+ ..++........+...+ .-.+|++|||+||||||||++|+++|+.+ +.+++.+++..+.. .|+|
T Consensus 14 IiGQ~eAkk~l-svAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 14 IIGQDNAKKSV-AIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred ccCHHHHHHHH-HHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcccC
Confidence 88999988887 45554321111111111 12356899999999999999999999999 57788899888874 7888
Q ss_pred hhHHHHHHHHHHHHh-------------------------------hc--------------------------------
Q 004550 299 ETEKNIRDLFADAEN-------------------------------DQ-------------------------------- 315 (745)
Q Consensus 299 ~~e~~i~~~f~~a~~-------------------------------~~-------------------------------- 315 (745)
+.+..++.+|+.|.. ..
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 678888999888711 00
Q ss_pred --------ccc------C------------------------------------------------------CCCCeEEE
Q 004550 316 --------RTR------G------------------------------------------------------DQSDLHVI 327 (745)
Q Consensus 316 --------~~~------~------------------------------------------------------~~~~p~Il 327 (745)
+.. + ....-.|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 000 0 00122399
Q ss_pred EEccchhhhhcCCCCCCCCcch-hHHHHHHHHhccCc--------cCCCcEEEEEEeC----CCCCCChhhhCCCCccce
Q 004550 328 IFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGV--------ESLNNVLLIGMTN----RKDMLDEALLRPGRLEVQ 394 (745)
Q Consensus 328 ~iDEid~l~~~~~~~~~~~~~~-~~~~~~LL~~~d~~--------~~~~~v~vI~~tn----~~~~id~al~r~gRf~~~ 394 (745)
||||||.++.+..+. +..+. .-+...||..++|- -...++++|++.- .|+++-|.|. |||+..
T Consensus 252 fiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 252 FIDEIDKIAKKGESS--GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEEchhhhcccCCCC--CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 999999999765322 12222 33677788888873 2346788888763 4667778885 599999
Q ss_pred EEecCCCHHHHHHHH
Q 004550 395 VEISLPDENGRLQIL 409 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il 409 (745)
+.+..+++++..+||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999998
No 153
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.1e-12 Score=143.97 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=135.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-+|++ |.|.+...+.| +.++... +.+..+||+||||||||++|+++|+.+++..
T Consensus 11 PktFdd--VIGQe~vv~~L-~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 11 PRNFNE--LVGQNHVSRAL-SSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 467888 99999988877 6666432 2345789999999999999999999986421
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+++++ ......+|++.+.+... +..+ ...|+||||+|.|. .
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~-P~~g---k~KV~IIDEVh~LS-------------~ 132 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYA-PTQG---RFKVYLIDEVHMLS-------------T 132 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhh-hhcC---CcEEEEEechHhcC-------------H
Confidence 11122211 11234567776655432 2212 24599999999884 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.|+..++.. ...+.+|++|+.+..+.+.+++ |+. .++|..++.++..+.++..+++... ..++..+..
T Consensus 133 ~A~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~ 204 (702)
T PRK14960 133 HSFNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQ 204 (702)
T ss_pred HHHHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 3456778777743 3567888888888889888887 774 7899999999999888877765331 234556888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
+++.+.| +.+++.+++..+..+
T Consensus 205 IA~~S~G-dLRdALnLLDQaIay 226 (702)
T PRK14960 205 IAESAQG-SLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 8888876 777777777766543
No 154
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.8e-12 Score=142.45 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC-----------------------eEEEeccc
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP-----------------------FVKIISAE 570 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-----------------------~i~v~~~~ 570 (745)
+++.+.+...+.. ...+..+||+||||||||++|+++|+...+. ++.++.
T Consensus 20 ~~v~~~L~~~i~~-----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~-- 92 (504)
T PRK14963 20 EHVKEVLLAALRQ-----GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA-- 92 (504)
T ss_pred HHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc--
Confidence 3455555444432 2344556999999999999999999876431 222221
Q ss_pred cccccchhhHHHHHHHHHHHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 004550 571 SMIGLHESTKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 646 (745)
Q Consensus 571 ~l~g~~~~~~~~~i~~~f~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn 646 (745)
+.......++++.+.+.. ..+.|+||||+|.+. ...++.|+..|+..+ ..+++|.+|+
T Consensus 93 -----~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------~~a~naLLk~LEep~---~~t~~Il~t~ 154 (504)
T PRK14963 93 -----ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------KSAFNALLKTLEEPP---EHVIFILATT 154 (504)
T ss_pred -----cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------HHHHHHHHHHHHhCC---CCEEEEEEcC
Confidence 111234456666555432 356799999999763 456677777777642 2455555677
Q ss_pred CCCCCCccccccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhh
Q 004550 647 EVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEA 722 (745)
Q Consensus 647 ~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~ 722 (745)
.+..+.+. +.+| +..++|++++.+++.+.+++ .+...+++....+...++|++|++++.++.+....
T Consensus 155 ~~~kl~~~-I~SR-c~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~------- 225 (504)
T PRK14963 155 EPEKMPPT-ILSR-TQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG------- 225 (504)
T ss_pred ChhhCChH-Hhcc-eEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------
Confidence 77666653 3344 56899999999998777765 34445667777777888999999999999875431
Q ss_pred cccCCCCccHhHHHHHH
Q 004550 723 IYSGREKIKISHFYDCL 739 (745)
Q Consensus 723 ~~~~~~~I~~~~~~~al 739 (745)
..|+.+++.+++
T Consensus 226 -----~~It~~~V~~~l 237 (504)
T PRK14963 226 -----TPVTRKQVEEAL 237 (504)
T ss_pred -----CCCCHHHHHHHH
Confidence 247777776654
No 155
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.2e-12 Score=145.47 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=134.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+||+||||||||++|+++|+.+++..
T Consensus 12 P~~f~d--ivGq~~v~~~L-~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 12 PRCFQE--VIGQAPVVRAL-SNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 567888 99999999888 6666432 2234689999999999999999999996532
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+++.+ ......+|++.+.+... |..+ ...|+||||+|.|. .
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~-p~~~---~~kV~iIDE~~~ls-------------~ 133 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYA-PTKG---RFKVYLIDEVHMLS-------------G 133 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhc-cccC---CcEEEEEEChHhcC-------------H
Confidence 12222211 12234567766655432 2222 24599999999984 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.||..|+.. ...+.+|.+|+.+..+.+.+++ |+. .++|..++.++....++..+++... ...+..+..
T Consensus 134 ~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ 205 (509)
T PRK14958 134 HSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDL 205 (509)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 3467788887743 3568888888888999888988 763 6789888888888877777654331 224445778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
+++.+.| +.+++.++++.+..+
T Consensus 206 ia~~s~G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhc
Confidence 8888876 778888888776543
No 156
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=7.5e-12 Score=130.39 Aligned_cols=185 Identities=19% Similarity=0.235 Sum_probs=124.4
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccccchhhHHH-----HHH---------------HHHHH
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHESTKCA-----QIV---------------KVFED 590 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g~~~~~~~~-----~i~---------------~~f~~ 590 (745)
.++||+||||||||++|+++|...+.+|+.+++.+. ++|.+.+.... .+. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 578999999999999999999999999999976543 34433211100 000 11122
Q ss_pred HhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC----CC---------CCCcEEEEEecCCCC-----CCC
Q 004550 591 AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL----PP---------KGKKLLVIGTTSEVS-----FLD 652 (745)
Q Consensus 591 a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~----~~---------~~~~v~vI~ttn~~~-----~l~ 652 (745)
|.+. ..+|+||||+++. ..+++.|+..|+.- +. ....+.||+|+|... .+
T Consensus 102 A~~~-g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l- 169 (262)
T TIGR02640 102 AVRE-GFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET- 169 (262)
T ss_pred HHHc-CCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc-
Confidence 2222 3699999999963 45666777777542 11 112567899999753 22
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHH---C---C---CCcHHHHHHHHHHHHccccCCchhhc
Q 004550 653 SVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEA---L---N---DMPIKKLYMLIEMAAQGEQGGAAEAI 723 (745)
Q Consensus 653 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~---~---~---~~~ir~ll~~l~~a~~~~~~~~~~~~ 723 (745)
+..+..|| ..++++.|+.++..+|+++.....+..+..++.. + . ..++|.++.++++++..+
T Consensus 170 ~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~-------- 240 (262)
T TIGR02640 170 QDALLDRL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQD-------- 240 (262)
T ss_pred cHHHHhhc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcC--------
Confidence 23456787 5789999999888999987544554433333221 1 1 556999999999988775
Q ss_pred ccCCCCccHhHHHHHHHHHh
Q 004550 724 YSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 724 ~~~~~~I~~~~~~~al~~~~ 743 (745)
.+..++.++|.+...+++
T Consensus 241 --~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 241 --IPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred --CCCCCCcHHHHHHHHHHh
Confidence 346789999999988876
No 157
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.5e-12 Score=141.76 Aligned_cols=174 Identities=23% Similarity=0.260 Sum_probs=122.9
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC------------------------CeEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
+.+.++||+||+|+|||++|+.+|+..++ .++.++..+ ..+.+.++++.
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-------~~~vddIR~Ii 105 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-------NTSVDDIKVIL 105 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-------CCCHHHHHHHH
Confidence 45668999999999999999999975432 223332221 12456788888
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. +.+.|++|||+|.|. ....++|+..|+..++ .+.+|.+|+.++.+.. .+++| +..+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~Ls----------~~A~NaLLK~LEePp~---~v~fIlatte~~Kl~~-tI~SR-c~~~ 170 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHMLS----------NSAFNALLKTLEEPAP---HVKFILATTEVKKIPV-TIISR-CQRF 170 (491)
T ss_pred HHHHhccccCCceEEEEeChHhCC----------HHHHHHHHHHHhCCCC---CeEEEEEeCChHHHHH-HHHHh-heee
Confidence 77753 345799999999874 4567788888887543 4555556666665554 34455 5789
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+|.+++.+++.+.+++ .+...+++..+.+...++|++|.+++.++.+.... + ..||.+++.+.+
T Consensus 171 ~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~----------~-~~It~e~V~~ll 238 (491)
T PRK14964 171 DLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYS----------N-NKISEKSVRDLL 238 (491)
T ss_pred ecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------C-CCCCHHHHHHHH
Confidence 9999998888777775 34555666667777778999999999998877543 1 358888887654
No 158
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.7e-12 Score=140.71 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=138.7
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC-----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----------- 282 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----------- 282 (745)
+-+|++ +.|.+..++.+ +.++..- +.+.++||+||||+|||++|+.+|+.+++.
T Consensus 9 P~~f~d--liGQe~vv~~L-~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 9 PSSFKD--LVGQDVLVRIL-RNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 568998 89999988877 6666543 234579999999999999999999987532
Q ss_pred ------------CcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 283 ------------EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 283 ------------~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
.++.+++++ ......+|++.+.+... |.. +...|++|||+|.|. .
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~-P~~---~~~KVvIIDEah~Ls-------------~ 130 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYL-PIS---SKFKVYIIDEVHMLS-------------N 130 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhc-ccc---CCceEEEEeChHhCC-------------H
Confidence 112233221 12345677777776543 322 235699999999884 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.||..++.. ...+.+|.+|+.++.+.+.+++ |+. .+++..++.++..+.++..+++... ..++..+..
T Consensus 131 ~A~NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~l 202 (491)
T PRK14964 131 SAFNALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKL 202 (491)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 3567788888853 3568888888888899999998 764 6899999999998888877664331 234556788
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
+++.+.| +.+++.++++.+..+
T Consensus 203 Ia~~s~G-slR~alslLdqli~y 224 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAIY 224 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 8888876 778888888777654
No 159
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.9e-12 Score=145.08 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=124.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC------------eEEE---------ecccc
Q 004550 513 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP------------FVKI---------ISAES 571 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------~i~v---------~~~~~ 571 (745)
.+++++.+...... .+.+..+||+||+|+|||++|+++|+..++. +-.. ..++.
T Consensus 21 Qe~vv~~L~~~l~~-----~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~ 95 (618)
T PRK14951 21 QEHVVQALTNALTQ-----QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDY 95 (618)
T ss_pred cHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCce
Confidence 34455555444332 1334567999999999999999999876541 0000 00110
Q ss_pred c-cccchhhHHHHHHHHHHHHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 004550 572 M-IGLHESTKCAQIVKVFEDAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 646 (745)
Q Consensus 572 l-~g~~~~~~~~~i~~~f~~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn 646 (745)
+ +......+.+.++++.+.+... ...|++|||+|+|. ....++|+..|+..+ ..+.+|.+|+
T Consensus 96 ~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls----------~~a~NaLLKtLEEPP---~~~~fIL~Tt 162 (618)
T PRK14951 96 TELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT----------NTAFNAMLKTLEEPP---EYLKFVLATT 162 (618)
T ss_pred eecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC----------HHHHHHHHHhcccCC---CCeEEEEEEC
Confidence 0 0001112455788888776433 35799999999974 455677777776643 2444555556
Q ss_pred CCCCCCccccccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhh
Q 004550 647 EVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEA 722 (745)
Q Consensus 647 ~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~ 722 (745)
.+..+... +++| +..++|.+++.+++.+.+++ .+...+.+....+...++|++|.++++++.+....
T Consensus 163 d~~kil~T-IlSR-c~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~------- 233 (618)
T PRK14951 163 DPQKVPVT-VLSR-CLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG------- 233 (618)
T ss_pred CchhhhHH-HHHh-ceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------
Confidence 66665543 4455 68999999998888777765 34444566666777788999999999987665432
Q ss_pred cccCCCCccHhHHHHHH
Q 004550 723 IYSGREKIKISHFYDCL 739 (745)
Q Consensus 723 ~~~~~~~I~~~~~~~al 739 (745)
...|+.+++.+.+
T Consensus 234 ----~~~It~~~V~~~L 246 (618)
T PRK14951 234 ----SGQLQEAAVRQML 246 (618)
T ss_pred ----CCCcCHHHHHHHH
Confidence 1347766666554
No 160
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3e-12 Score=145.52 Aligned_cols=182 Identities=15% Similarity=0.161 Sum_probs=119.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeE-------EE------ec---cccc-cccchhhHHHHHHHHHHHHhc--
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFV-------KI------IS---AESM-IGLHESTKCAQIVKVFEDAYK-- 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i-------~v------~~---~~~l-~g~~~~~~~~~i~~~f~~a~~-- 593 (745)
+.+..+||+||+|+|||++|+++|+..++.-. .. .. ++.+ +........+.++++++.+..
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 44567899999999999999999987654210 00 00 0000 000112234568888876532
Q ss_pred --CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 594 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 594 --~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
....|+||||+|.|. ....+.|+..|+..+. .+.+|.+|+.+..+... +++| +..+.|++++.
T Consensus 116 ~~gk~KVIIIDEad~Ls----------~~A~NALLKtLEEPp~---~v~fILaTtd~~kL~~T-IrSR-C~~f~f~~Ls~ 180 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLS----------KSAFNAMLKTLEEPPE---HVKFILATTDPHKVPVT-VLSR-CLQFVLRNMTA 180 (709)
T ss_pred hhCCcEEEEEECccccC----------HHHHHHHHHHHHhCCC---CcEEEEEeCCccccchH-HHHH-HhhhhcCCCCH
Confidence 345799999999863 4556778888876432 44555566666665553 3455 47899999998
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 672 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 672 ~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+++...|++ .+...+++....+.+.+.|++|.++++++.+.... ...|+.+++.+.+.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-----------~g~It~e~V~~lLG 242 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG-----------SGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHHc
Confidence 887776654 45555666677777788999999999998776532 12466666665543
No 161
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.9e-12 Score=146.45 Aligned_cols=197 Identities=19% Similarity=0.228 Sum_probs=134.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE----EEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----IVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~----~v~~ 289 (745)
+-+|++ |-|.+..++.| +.++... +.+..+||+||||||||++||++|+.+++.... +-.|
T Consensus 12 P~tFdd--IIGQe~Iv~~L-knaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 12 PATFEQ--MVGQSHVLHAL-TNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 568888 89999998887 6666432 123457999999999999999999999653110 0001
Q ss_pred ---chhhhh-------ccc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 290 ---PEVLSK-------FVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 290 ---~~l~~~-------~~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
-.+... +-+ .....+|++.+.+... +..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~-P~~g---k~KViIIDEAh~LT-------------~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR-PSRG---RFKVYLIDEVHMLS-------------RSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechHhcC-------------HHHHHHH
Confidence 111100 011 1233466666655432 2222 23599999999983 4466778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+. ...++++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+.... ....+..+..++..+.
T Consensus 140 LKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~ 211 (944)
T PRK14949 140 LKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888884 34578888889999999999998 76 4789999999999988887765422 1234445788888887
Q ss_pred CCCHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAV 451 (745)
Q Consensus 437 g~sg~dl~~l~~~A~ 451 (745)
| +.+++.+++..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6677777777665
No 162
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.41 E-value=5.9e-12 Score=139.90 Aligned_cols=190 Identities=23% Similarity=0.320 Sum_probs=126.4
Q ss_pred CCcccccCccccHHHHHH--HHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
+-+|++ +.|.++.+.. .+++++... .+.+++|+||||||||++|+++++.+. ..+..+++..
T Consensus 8 P~~l~d--~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~-~~~~~l~a~~ 71 (413)
T PRK13342 8 PKTLDE--VVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATD-APFEALSAVT 71 (413)
T ss_pred CCCHHH--hcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeccc
Confidence 356777 8888877654 226655432 234799999999999999999999984 5566666542
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
.....++++++.+..... .....+|||||+|.+.. ...+.|+..++. +.+++
T Consensus 72 -------~~~~~ir~ii~~~~~~~~----~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iil 123 (413)
T PRK13342 72 -------SGVKDLREVIEEARQRRS----AGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITL 123 (413)
T ss_pred -------ccHHHHHHHHHHHHHhhh----cCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEE
Confidence 123456677776654221 11246999999998842 223445655542 56778
Q ss_pred EEEeC--CCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 372 IGMTN--RKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 372 I~~tn--~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
|++|+ ....+++++++ |+ ..+.+++++.++...+++..+..........++..++.+++.+.| ..+.+.++++.
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~ 199 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLEL 199 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 87763 34578999998 87 578999999999999999876543211101234456778888755 56666666666
Q ss_pred HH
Q 004550 450 AV 451 (745)
Q Consensus 450 A~ 451 (745)
+.
T Consensus 200 ~~ 201 (413)
T PRK13342 200 AA 201 (413)
T ss_pred HH
Confidence 54
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=6.5e-12 Score=148.12 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=117.7
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC--------------------------eEEEeccccccccchhhHHHHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP--------------------------FVKIISAESMIGLHESTKCAQIVKV 587 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~--------------------------~i~v~~~~~l~g~~~~~~~~~i~~~ 587 (745)
....+||+||+|||||++|+++|+.+.+. ++.++.. + ....+.++++
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaa------s-~~~Vd~iR~l 108 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAA------S-HGGVDDAREL 108 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccc------c-cCCHHHHHHH
Confidence 34458999999999999999999877541 1112111 1 1134456665
Q ss_pred HHHH----hcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceE
Q 004550 588 FEDA----YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVT 663 (745)
Q Consensus 588 f~~a----~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~ 663 (745)
-+.+ ..+...|+||||+|+|. ....+.|+..|+..+. .+++|.+|+.++.+-+ .+++| +.+
T Consensus 109 ~~~~~~~p~~~~~KV~IIDEad~lt----------~~a~NaLLK~LEEpP~---~~~fIl~tt~~~kLl~-TIrSR-c~~ 173 (824)
T PRK07764 109 RERAFFAPAESRYKIFIIDEAHMVT----------PQGFNALLKIVEEPPE---HLKFIFATTEPDKVIG-TIRSR-THH 173 (824)
T ss_pred HHHHHhchhcCCceEEEEechhhcC----------HHHHHHHHHHHhCCCC---CeEEEEEeCChhhhhH-HHHhh-eeE
Confidence 4443 34567899999999984 5567788888887543 4555556666665544 34455 679
Q ss_pred EEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHH
Q 004550 664 YHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 738 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~a 738 (745)
++|.+++.+++.+.|++. +...+.+...++....++++|.+++.++...... +...|+.+++.+.
T Consensus 174 v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~----------~~~~IT~e~V~al 242 (824)
T PRK07764 174 YPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGA----------GPEGVTYERAVAL 242 (824)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc----------CCCCCCHHHHHHH
Confidence 999999988888777763 4445666667777888999999999998866433 2234666665544
No 164
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=2.9e-12 Score=131.26 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=115.4
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCC---CCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSD---FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 612 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~---~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~ 612 (745)
.+++||||||||||++++++|+... .....+...+ .. ....++.+...+ ..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~-~~--------~~~~~~~~~~~~--~dlliiDdi~~~~~--- 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK-RA--------WFVPEVLEGMEQ--LSLVCIDNIECIAG--- 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH-Hh--------hhhHHHHHHhhh--CCEEEEeChhhhcC---
Confidence 5799999999999999999997543 2222221111 10 011122222211 26899999999852
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH----ccCC
Q 004550 613 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ----LNVF 684 (745)
Q Consensus 613 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~----~~~~ 684 (745)
.....+.|..+++...+.++.-+++++++.|..+.. ..+++|+. ..+.+++|+.+++.+++++ .+..
T Consensus 112 -----~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~ 186 (235)
T PRK08084 112 -----DELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE 186 (235)
T ss_pred -----CHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC
Confidence 122333444444443233333355555555555432 37789986 8999999999999999987 2456
Q ss_pred CHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 685 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 685 ~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.++|+...+....++++|.++.+++.....+-. ....||.+.+.++++
T Consensus 187 l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~--------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 187 LPEDVGRFLLKRLDREMRTLFMTLDQLDRASIT--------AQRKLTIPFVKEILK 234 (235)
T ss_pred CCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHc
Confidence 788888888888999999999999986533211 224599988888764
No 165
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5e-12 Score=143.57 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=118.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeE-------EEe---------ccccc-cccchhhHHHHHHHHHHHHhc--
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFV-------KII---------SAESM-IGLHESTKCAQIVKVFEDAYK-- 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i-------~v~---------~~~~l-~g~~~~~~~~~i~~~f~~a~~-- 593 (745)
+.+..+||+||||+|||++|+++|+..++..- ... .++.+ +......+...++++.+.+..
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p 115 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP 115 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc
Confidence 34456799999999999999999987754210 000 00100 000112345678888877643
Q ss_pred --CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 594 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 594 --~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
+...|+||||+|++. ....++|+..|+..+. .+.+|.+|+.++.+.+. +++| +..++|++++.
T Consensus 116 ~~~~~kVvIIDEad~ls----------~~a~naLLK~LEepp~---~~~fIL~t~d~~kil~t-I~SR-c~~~~f~~l~~ 180 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLS----------KSAFNAMLKTLEEPPE---HVKFILATTDPQKIPVT-VLSR-CLQFNLKQMPP 180 (527)
T ss_pred ccCCceEEEEcCcccCC----------HHHHHHHHHHHhCCCC---CEEEEEEeCChhhCchh-HHHH-HHHHhcCCCCH
Confidence 345799999999874 4456778888876432 44555556666655543 4455 68999999998
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 672 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 672 ~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+++.+.+.+ .+...+++....+...++|++|+++++++.+.... ...|+.+++.+.+
T Consensus 181 ~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~-----------~~~I~~~~v~~~~ 241 (527)
T PRK14969 181 PLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYG-----------GGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHH
Confidence 887765554 34444555566677778999999999998876542 1346666665544
No 166
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=1.5e-12 Score=139.70 Aligned_cols=183 Identities=26% Similarity=0.369 Sum_probs=128.2
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhC-CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-hccc-
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG- 298 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g- 298 (745)
|.|+++.++.+ ..++........+...+. -..|+++||+||||||||++|+++|+.+ +.+++.++++++.. .|+|
T Consensus 17 IiGQe~Akkal-avAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 17 IIGQDDAKRAV-AIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCcccC
Confidence 99999999888 455533211111101111 0135899999999999999999999998 57788899998886 7999
Q ss_pred hhHHHHHHHHHHHHhhc---------------------------------------------------------------
Q 004550 299 ETEKNIRDLFADAENDQ--------------------------------------------------------------- 315 (745)
Q Consensus 299 ~~e~~i~~~f~~a~~~~--------------------------------------------------------------- 315 (745)
+.+..++.+|+.|....
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 66788999998882000
Q ss_pred -------cccC--C----------------------------------------------------------CCCeEEEE
Q 004550 316 -------RTRG--D----------------------------------------------------------QSDLHVII 328 (745)
Q Consensus 316 -------~~~~--~----------------------------------------------------------~~~p~Il~ 328 (745)
+..+ . ...-.|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0000 0 01223999
Q ss_pred EccchhhhhcCCCCCCCCcch-hHHHHHHHHhccCc--------cCCCcEEEEEEe----CCCCCCChhhhCCCCccceE
Q 004550 329 FDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 329 iDEid~l~~~~~~~~~~~~~~-~~~~~~LL~~~d~~--------~~~~~v~vI~~t----n~~~~id~al~r~gRf~~~i 395 (745)
|||||.|+.+.++. +..+. .-+...||..++|- -...++++|++. ..|+++-|.|. |||+..+
T Consensus 255 iDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 255 IDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999775431 22232 33677788888873 234678888876 34677778885 5999999
Q ss_pred EecCCCHHHHHHHHH
Q 004550 396 EISLPDENGRLQILQ 410 (745)
Q Consensus 396 ~i~~Pd~~~r~~Il~ 410 (745)
.+..+++++..+||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999999983
No 167
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=7.4e-12 Score=137.28 Aligned_cols=246 Identities=20% Similarity=0.265 Sum_probs=146.6
Q ss_pred ccccHHHHHHHHHHHHHcc---CCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-hcc
Q 004550 222 IGGLSAEFADIFRRAFASR---VFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFV 297 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~---~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~ 297 (745)
|.|++..++.+ ..++... +.+......-...+..++||+||||||||++|+++|+.+ +.++..+++..+.. .|+
T Consensus 73 ViGq~~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVL-SVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHH-HHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcc
Confidence 89999998877 4444221 111100000001245789999999999999999999998 56778888887753 688
Q ss_pred chhHHH-HHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcc-hhHHHHHHHHhccCcc-----------
Q 004550 298 GETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE----------- 364 (745)
Q Consensus 298 g~~e~~-i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~----------- 364 (745)
|..... +..++..+..... ...++||||||||.+.++++.......+ ...+.+.||..|++..
T Consensus 151 G~d~e~~l~~l~~~~~~~~~----~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVE----KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred cchHHHHHHHHHHhccccHH----HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 876444 4444443211000 0125699999999998774332211111 2347777888887531
Q ss_pred CCCcEEEEEEeCCCC----------------------------------------------------CCChhhhCCCCcc
Q 004550 365 SLNNVLLIGMTNRKD----------------------------------------------------MLDEALLRPGRLE 392 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~----------------------------------------------------~id~al~r~gRf~ 392 (745)
...+.++|.|+|... .+.|++. ||++
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112344555544400 0234554 4999
Q ss_pred ceEEecCCCHHHHHHHHHH----HHccccc---cCCC---CCcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhhcc
Q 004550 393 VQVEISLPDENGRLQILQI----HTNKMKE---NSFL---APDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQLS 460 (745)
Q Consensus 393 ~~i~i~~Pd~~~r~~Il~~----~~~~~~~---~~~l---~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~~~ 460 (745)
..+.|.+.++++..+|+.. .++++.. ...+ .++..++.+++. ..++-.+.|+.+++......+.+...
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~ 384 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPS 384 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccc
Confidence 9999999999999999973 3322210 0001 133346677765 45667788888888877776654332
Q ss_pred ccCCCCCCcccCceeehhhHH
Q 004550 461 MDDLTKPVDEESIKVTMDDFL 481 (745)
Q Consensus 461 ~~~~~~~~~~~~~~it~~df~ 481 (745)
.. ......|+.+.+.
T Consensus 385 ~~------~~~~v~I~~~~v~ 399 (412)
T PRK05342 385 RE------DVEKVVITKEVVE 399 (412)
T ss_pred cC------CCceEEECHHHhc
Confidence 11 1234556666654
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=9.2e-12 Score=142.39 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC------------------------CeEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+..+||+||+|||||++|+.+|+...+ +++.++.. .....+.++++.
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-------s~~~vd~ir~i~ 108 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA-------SNNGVDEIRDIR 108 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc-------ccCCHHHHHHHH
Confidence 34566899999999999999999987543 22222211 112345688888
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. ....|+||||+|.|. ....++|+..|+..+. .+++|.+|+.++.+.+ .+++| +..+
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~Lt----------~~a~naLLKtLEepp~---~~ifIlatt~~~ki~~-tI~SR-c~~~ 173 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHMLS----------TGAFNALLKTLEEPPA---HVIFILATTEPHKIPA-TILSR-CQRF 173 (559)
T ss_pred HHHhhCcccCCeEEEEEECcccCC----------HHHHHHHHHHhcCCCC---CeEEEEEeCChhhCcH-HHHhH-heEE
Confidence 77653 346799999999984 4456677777776432 4455555666776665 34455 4589
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
.|++++.+++...++. .+...+++....+...++|++|.+++.++.+..... ..|+.+++.+++
T Consensus 174 ~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~-----------~~It~~~V~~vl 241 (559)
T PRK05563 174 DFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGD-----------GKVTYEDALEVT 241 (559)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-----------CCCCHHHHHHHh
Confidence 9999999888777765 344455666667777889999999999987755331 346666655543
No 169
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=5.1e-12 Score=143.59 Aligned_cols=199 Identities=21% Similarity=0.225 Sum_probs=137.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-E-----
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 287 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v----- 287 (745)
.-+|++ |.|.+..++.| +.++... +.+.++||+||+|||||++|+++|+.+++..... .
T Consensus 12 P~tFdd--IIGQe~vv~~L-~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 12 PKTFAD--LVGQEHVVKAL-QNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred CCCHHH--HcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 567898 99999999888 6666542 3345799999999999999999999986432100 0
Q ss_pred -ccc--------hhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 288 -NGP--------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 288 -~~~--------~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
.|. +++ +.........++++++.+... |..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~-P~~g---k~KVIIIDEad~Ls-------------~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG---KYKVYIIDEVHMLS-------------KSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhh-hhhC---CcEEEEEECccccC-------------HHHHHHH
Confidence 000 110 001112334677777765432 2212 23599999999873 2345678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+.. ...+.+|++|+.+..+.+.+++ |+. .+.|+.++.++....|+..+++... ..++..+..|++.+.
T Consensus 140 LKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 140 LKTLEEP--PEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHhC--CCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhC
Confidence 8887743 3567888888999999999987 874 6788899999999999887765431 134445788888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.+++.+++..+..+
T Consensus 212 G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL 227 (709)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 788888888777654
No 170
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.40 E-value=3.1e-12 Score=143.86 Aligned_cols=191 Identities=16% Similarity=0.201 Sum_probs=122.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERL 607 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l 607 (745)
....+++||||||||||++++++|++. +..++.+.+.+ +..............-|...++ .+.+|+|||++.+
T Consensus 146 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l 223 (450)
T PRK00149 146 KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK-FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFL 223 (450)
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhh
Confidence 344679999999999999999999775 45566665443 2211111000001122333333 3579999999998
Q ss_pred hhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc--
Q 004550 608 LEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL-- 681 (745)
Q Consensus 608 ~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~-- 681 (745)
.+. ...++.|+..++.....+ +.+||+++..|..++. ..+++||. ..+.+++|+.+++.+|++..
T Consensus 224 ~~~--------~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 224 AGK--------ERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred cCC--------HHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 521 223445555555443333 3356655555555332 25778996 68999999999999999974
Q ss_pred --cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 682 --NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 682 --~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
+...++|+...+.....+++|.|..++......+.. .+ ..||.+.+.++++++
T Consensus 295 ~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~-------~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 295 EEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASL-------TG-KPITLELAKEALKDL 349 (450)
T ss_pred HcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHh-------hC-CCCCHHHHHHHHHHh
Confidence 345677888888888899999998888776544322 11 336666666666654
No 171
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.2e-12 Score=141.91 Aligned_cols=173 Identities=16% Similarity=0.153 Sum_probs=116.3
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVFE 589 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f~ 589 (745)
.+.++||+||+|||||++|+.+|+...+. ++.++... ..+.+.++.+.+
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-------~~~Id~iR~L~~ 109 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-------NRGIDDAKRLKE 109 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-------ccCHHHHHHHHH
Confidence 35689999999999999999999877542 22221110 112334555443
Q ss_pred HHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEE
Q 004550 590 DAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 665 (745)
Q Consensus 590 ~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~ 665 (745)
.+. .+...||||||+|.|. ...++.|+..|+..+ ..+++|.+|+.+..+.. .+++| +..++
T Consensus 110 ~~~~~p~~g~~kVIIIDEad~Lt----------~~a~naLLk~LEEP~---~~~ifILaTt~~~kll~-TI~SR-cq~i~ 174 (624)
T PRK14959 110 AIGYAPMEGRYKVFIIDEAHMLT----------REAFNALLKTLEEPP---ARVTFVLATTEPHKFPV-TIVSR-CQHFT 174 (624)
T ss_pred HHHhhhhcCCceEEEEEChHhCC----------HHHHHHHHHHhhccC---CCEEEEEecCChhhhhH-HHHhh-hhccc
Confidence 332 3456899999999984 445677777777642 35666667777766655 34555 45899
Q ss_pred cCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 666 VPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 666 ~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
|++++.+++..+|+. .+...+++...++...+.|++|+++++++.+... +...|+.+++.+++
T Consensus 175 F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~-----------g~~~It~d~V~~~l 241 (624)
T PRK14959 175 FTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-----------GESRLTIDGARGVL 241 (624)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------cCCCcCHHHHHHHh
Confidence 999999999888775 3443455666677778899999999999876422 22357777665443
No 172
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.6e-11 Score=133.16 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~~ 289 (745)
+-+|++ +.|.+..++.+ ++++... ...++|||||||||||++|+++++.+.+. .+..+++
T Consensus 11 P~~~~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 11 PALLED--ILGQDEVVERL-SRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred CCcHHH--hcCCHHHHHHH-HHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 456888 77899888887 6665432 12369999999999999999999998533 3456777
Q ss_pred chhhhhc-------------cch-------hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcch
Q 004550 290 PEVLSKF-------------VGE-------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVH 349 (745)
Q Consensus 290 ~~l~~~~-------------~g~-------~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 349 (745)
.++.... .+. ....++.+........+.. ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vlilDe~~~l~~------------ 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS---ADYKTILLDNAEALRE------------ 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC---CCCcEEEEeCcccCCH------------
Confidence 6654221 111 1123333333333322221 2345999999998742
Q ss_pred hHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHH
Q 004550 350 DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQ 429 (745)
Q Consensus 350 ~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~ 429 (745)
...+.|+..++... ....+|.+++.+..+.+.+++ |+ ..+++++|+.++...+++..+++... ..++..++
T Consensus 140 -~~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~ 210 (337)
T PRK12402 140 -DAQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLE 210 (337)
T ss_pred -HHHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHH
Confidence 12334455555332 234566677777778888887 65 37899999999999999987765432 13455678
Q ss_pred HHHHHcCCCCHHHHHHHH
Q 004550 430 ELAARTKNYSGAELEGVA 447 (745)
Q Consensus 430 ~la~~t~g~sg~dl~~l~ 447 (745)
.++..+.| +.+++...+
T Consensus 211 ~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTL 227 (337)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 88888743 444443333
No 173
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.40 E-value=6.9e-12 Score=148.07 Aligned_cols=228 Identities=21% Similarity=0.242 Sum_probs=144.3
Q ss_pred CccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh-------
Q 004550 221 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------- 293 (745)
Q Consensus 221 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~------- 293 (745)
..-|+++.+++| .+.+..... .+-.+...++|+||||||||++++.+|+.++ .++..++.....
T Consensus 323 ~~~g~~~vK~~i-~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 323 DHYGLERVKDRI-LEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hccCHHHHHHHH-HHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCHHHhcc
Confidence 378899988888 344432211 1112345699999999999999999999984 555555543322
Q ss_pred --hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc--------
Q 004550 294 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 363 (745)
Q Consensus 294 --~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-------- 363 (745)
..|.|.....+.+.+..+... ..||+|||+|.+.+.... ...+.|+..+|.-
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~---------~~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVK---------NPLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCC---------CCEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecc
Confidence 245666655665555544322 238999999999754221 1234566665531
Q ss_pred -----cCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHc-c-ccccCC----C-CCcccHHHH
Q 004550 364 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTN-K-MKENSF----L-APDVNLQEL 431 (745)
Q Consensus 364 -----~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~-~-~~~~~~----l-~~~~~l~~l 431 (745)
...+++++|+|+|.. .|+++|++ |+. .|.++.++.++..+|.+.|+. + ...++. + ..+..+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 123789999999887 59999998 996 789999999999999999884 1 111110 1 122234445
Q ss_pred HH-HcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHH
Q 004550 432 AA-RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 485 (745)
Q Consensus 432 a~-~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 485 (745)
++ .+..+-.+.|+++++..+...+.+.+.... .....++.+++...+.
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLLLDKS------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC------CceeeecHHHHHHHhC
Confidence 43 334445567777777666666555432111 2346788888877665
No 174
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.40 E-value=2.1e-12 Score=147.17 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=119.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEecccc----------cccc-----chhhH-------H
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES----------MIGL-----HESTK-------C 581 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~----------l~g~-----~~~~~-------~ 581 (745)
.+.++||+||||||||++|++++..+ +.+|+.+++... ++|. +.+.. .
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 45689999999999999999998642 468898876421 1110 00000 0
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----------------C---------CC
Q 004550 582 AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------------P---------KG 636 (745)
Q Consensus 582 ~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------------~---------~~ 636 (745)
+.-...+. +...++||||||+.|. ...++.|+..|+.-. . ..
T Consensus 165 ~~~~G~l~---~a~gG~L~IdEI~~L~----------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (531)
T TIGR02902 165 QPKPGAVT---RAHGGVLFIDEIGELH----------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLP 231 (531)
T ss_pred cccCchhh---ccCCcEEEEechhhCC----------HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcc
Confidence 00001222 2334799999999984 445556665554310 0 01
Q ss_pred Cc-EEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHH
Q 004550 637 KK-LLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMA 711 (745)
Q Consensus 637 ~~-v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a 711 (745)
.. .+|++||+.++.+++ .+++|+ ..+.|++++.+|+..|+++. +...+++..+.+..++. +.|++.++++.|
T Consensus 232 ~d~rlI~ATt~~p~~L~p-aLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~A 308 (531)
T TIGR02902 232 ADFRLIGATTRNPEEIPP-ALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLA 308 (531)
T ss_pred cceEEEEEecCCcccCCh-HHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 12 344566677888887 455675 57899999999999999974 22333444445555554 789999999999
Q ss_pred HccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 712 AQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+..+.. +++..|+.+|+..++.
T Consensus 309 a~~A~~-------~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 309 AGIALG-------EGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHhh-------CCCcEEcHHHHHHHhC
Confidence 876633 3556899999999886
No 175
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=1.4e-11 Score=133.80 Aligned_cols=178 Identities=20% Similarity=0.218 Sum_probs=112.1
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCC-----CCeEEEecccccccc-------------c------hhhHHHHHHHHHHHH
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGL-------------H------ESTKCAQIVKVFEDA 591 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~-----~~~i~v~~~~~l~g~-------------~------~~~~~~~i~~~f~~a 591 (745)
.++||+||||||||++|+++|++.. .+++.++..+..-.. . .......++++....
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 4799999999999999999998763 345666554321000 0 000122344433332
Q ss_pred hc-----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEc
Q 004550 592 YK-----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 666 (745)
Q Consensus 592 ~~-----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~ 666 (745)
.. ..+.+|+|||+|.+. ....+.|...++..+. ...+|+ +++.+..+.+ .+++|. ..+.|
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~----------~~~~~~L~~~le~~~~--~~~~Il-~~~~~~~~~~-~L~sr~-~~v~~ 181 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALR----------EDAQQALRRIMEQYSR--TCRFII-ATRQPSKLIP-PIRSRC-LPLFF 181 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCC----------HHHHHHHHHHHHhccC--CCeEEE-EeCChhhCch-hhcCCc-eEEEe
Confidence 21 345799999999873 3345667777776533 233444 4444443433 355664 68999
Q ss_pred CCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 667 PTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 667 p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
++++.+++..++++. +...+++..+.+...+++++|++++.++.+.... ..||.+++.+++.
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~------------~~It~~~v~~~~~ 247 (337)
T PRK12402 182 RAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAA------------GEITMEAAYEALG 247 (337)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHhC
Confidence 999999988888863 3333445555555566999999999998766322 3588888877665
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=5.2e-12 Score=140.30 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=135.9
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
|..+|++.-+|.-.+..-...+++...+...+ -.+..+++||||||+|||+|++++++.+. +..+.+++..
T Consensus 106 ~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~-------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 106 PLMTFANFLVTPENDLPHRILQEFTKVSEQGK-------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ccccccceeeCCcHHHHHHHHHHHHhcccccc-------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 78999997555544432233243332221011 12235799999999999999999999873 4556677777
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
++...+.......-.+.|..... .+++|+|||++.+..+.. ....+-.+++.+ ...+..+
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~---------~~dvLiIDDiq~l~~k~~--------~qeelf~l~N~l---~~~~k~I 238 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYR---------NVDALFIEDIEVFSGKGA--------TQEEFFHTFNSL---HTEGKLI 238 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcc---------cCCEEEEcchhhhcCChh--------hHHHHHHHHHHH---HHCCCcE
Confidence 66554332221111112332221 245999999999863321 112222222221 1123445
Q ss_pred EEEEeCCCC---CCChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 004550 371 LIGMTNRKD---MLDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 371 vI~~tn~~~---~id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 445 (745)
+++++..|. .+++.+++ ||. ..+.+++|+.++|..|++...+... ...++..++.++....+ +.++|++
T Consensus 239 Ilts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~---~~l~~evl~~la~~~~~-dir~L~g 312 (445)
T PRK12422 239 VISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS---IRIEETALDFLIEALSS-NVKSLLH 312 (445)
T ss_pred EEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 555444454 46789988 884 7899999999999999998876643 12344457778887764 6677776
Q ss_pred HHHHHHH-HHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 446 VAKSAVS-FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 446 l~~~A~~-~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
.+...+. .|..+. ....++.++...++..+
T Consensus 313 ~l~~l~~~~a~~~~------------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 313 ALTLLAKRVAYKKL------------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHh------------hCCCCCHHHHHHHHHHh
Confidence 6665532 233221 12347888888887764
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=1.3e-11 Score=126.53 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=116.0
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
++.+|++.-.|+-...+..+ +++... ....+++||||||||||+|++++++.+. +..+.+++..
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l-~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAAL-QNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CcCCccccccCccHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 67889887556444445444 554322 1234799999999999999999998764 2233444443
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
+... ...++.+.... ..+|+|||++.+..+. .....+...+...++ .++..
T Consensus 83 ~~~~--------~~~~~~~~~~~----------~dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~e----~g~~~ 133 (235)
T PRK08084 83 KRAW--------FVPEVLEGMEQ----------LSLVCIDNIECIAGDE-------LWEMAIFDLYNRILE----SGRTR 133 (235)
T ss_pred HHhh--------hhHHHHHHhhh----------CCEEEEeChhhhcCCH-------HHHHHHHHHHHHHHH----cCCCe
Confidence 3211 11122222111 1399999999985321 112222222222222 24433
Q ss_pred EEEEe-CCCCC---CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHH
Q 004550 371 LIGMT-NRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 444 (745)
Q Consensus 371 vI~~t-n~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 444 (745)
+|+++ +.|.. +.|.|++ |+. ..+++.+|+.+++.++++.+..... ...++..++.|++...+ +.+.+.
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~-d~r~l~ 207 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDR-EMRTLF 207 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcC-CHHHHH
Confidence 44444 45544 5799998 774 6899999999999999987654322 12345568888888886 777787
Q ss_pred HHHHHHH
Q 004550 445 GVAKSAV 451 (745)
Q Consensus 445 ~l~~~A~ 451 (745)
++++...
T Consensus 208 ~~l~~l~ 214 (235)
T PRK08084 208 MTLDQLD 214 (235)
T ss_pred HHHHHHH
Confidence 7777643
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=7.2e-12 Score=139.58 Aligned_cols=223 Identities=15% Similarity=0.289 Sum_probs=135.4
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 288 (745)
+.++|++.-+|.-....-...+++... | | ...+++||||||||||+|++++++.+. +..+.+++
T Consensus 100 ~~~tFdnFv~g~~n~~a~~~~~~~~~~----~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 100 PDYTFENFVVGPGNSFAYHAALEVAKN----P------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCcccccccCCchHHHHHHHHHHHhC----c------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 789999975553333221222332221 1 1 134699999999999999999999863 23466778
Q ss_pred cchhhhhccchhH-HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCC
Q 004550 289 GPEVLSKFVGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN 367 (745)
Q Consensus 289 ~~~l~~~~~g~~e-~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~ 367 (745)
+.+++..+..... ..+.++.+... . .+.+|+|||++.+..+. ..... ++..++.+...+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~-~--------~~dvLlIDDi~~l~~~~-------~~q~e----lf~~~n~l~~~~ 227 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYR-K--------KVDVLLIDDVQFLIGKT-------GVQTE----LFHTFNELHDSG 227 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHH-h--------cCCEEEEechhhhcCcH-------HHHHH----HHHHHHHHHHcC
Confidence 8877765543221 11222222111 1 24599999999886321 11122 222233222334
Q ss_pred cEEEEEEeCCCCC---CChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHH
Q 004550 368 NVLLIGMTNRKDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 442 (745)
Q Consensus 368 ~v~vI~~tn~~~~---id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 442 (745)
..++|++.+.|.. +++.+.+ || ...+.+.+||.+.|..|++...+.... ..++..++.+|+...+ +.++
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~-~~R~ 301 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDD-NLRR 301 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhcccc-CHHH
Confidence 4556655566655 4677877 65 457899999999999999988764321 2344558888888875 7788
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 443 LEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 443 l~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
|+.++.....++... ...+|.+....++...
T Consensus 302 L~g~l~~l~~~~~~~--------------~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 302 LRGAIIKLLVYKETT--------------GEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHHHh--------------CCCCCHHHHHHHHHHH
Confidence 888877665444322 2246777777776654
No 179
>PRK06620 hypothetical protein; Validated
Probab=99.39 E-value=5.1e-12 Score=127.16 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=113.8
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP 615 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~ 615 (745)
.+++||||||||||+++++++...+..++. +... ..+.+ + ...+|+||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~----~~~~----------~~~~~----~-~~d~lliDdi~~~~------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK----DIFF----------NEEIL----E-KYNAFIIEDIENWQ------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc----hhhh----------chhHH----h-cCCEEEEeccccch-------
Confidence 679999999999999999999887653322 1100 01111 1 23689999999642
Q ss_pred cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccc--eEEEcCCCCHHHHHHHHHHc----cCCCHHHH
Q 004550 616 RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFS--VTYHVPTLKTDDAKKVLKQL----NVFAEEDV 689 (745)
Q Consensus 616 ~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~--~~i~~p~~~~~~~~~Il~~~----~~~~~~d~ 689 (745)
. ..|..+++.+.+.+ +.++|+++..|..+.-..+++|+. ..+.+++|+.+++..++++. +...++|+
T Consensus 99 ---~---~~lf~l~N~~~e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred ---H---HHHHHHHHHHHhcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 23444544443444 457777776666544346788886 57999999999999998763 35578888
Q ss_pred HHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 690 DSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 690 ~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
...+....++++|.++.+++.....+.. .+ ..||.+.+.+++
T Consensus 172 ~~~L~~~~~~d~r~l~~~l~~l~~~~~~-------~~-~~it~~~~~~~l 213 (214)
T PRK06620 172 IDFLLVNLPREYSKIIEILENINYFALI-------SK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHH-------cC-CCCCHHHHHHHh
Confidence 8888888999999999999986543211 12 459998888876
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.7e-12 Score=139.74 Aligned_cols=184 Identities=18% Similarity=0.258 Sum_probs=126.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccc------------cccccchhhH
Q 004550 513 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTK 580 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~------------~l~g~~~~~~ 580 (745)
++++.+....+....+..+.....-++|+||||+|||++++.+|+..+-.|+++.-.- .++|.-.|
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG-- 405 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG-- 405 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh--
Confidence 3445555555544433334444456899999999999999999999999999984221 13444444
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc------------CCCCCCcEEEEEecCCC
Q 004550 581 CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 581 ~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vI~ttn~~ 648 (745)
.+-+-..+|....| +++|||||++...-..+ --++||+.||- ++-...+|++|+|.|..
T Consensus 406 --rIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD------PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 406 --KIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD------PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred --HHHHHHHHhCCcCC-eEEeechhhccCCCCCC------hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 45556667766665 88999999996322111 23455555543 11223589999999999
Q ss_pred CCCCccccccccceEEEcCCCCHHHHHHHHHHc---------------cCCCHHHHHHHHHHCC-CCcHHHHHHHHH
Q 004550 649 SFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL---------------NVFAEEDVDSASEALN-DMPIKKLYMLIE 709 (745)
Q Consensus 649 ~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~---------------~~~~~~d~~~~~~~~~-~~~ir~ll~~l~ 709 (745)
+.+.. .|.+|.. +|+++.|+.+|-.+|.+++ -.++++.+..++..++ ..++|.|-.-+.
T Consensus 477 ~tIP~-PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 477 DTIPA-PLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA 551 (782)
T ss_pred ccCCh-HHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 87766 4446654 9999999999999999973 1466778888888887 666776655443
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.4e-11 Score=130.15 Aligned_cols=229 Identities=19% Similarity=0.268 Sum_probs=149.9
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC---C-cEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM---E-PKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~---~-~~~v~ 288 (745)
+++.-+. +-+-+.|++++ ...+...+. -..|.++++|||||||||.+++.+++++... . +..+|
T Consensus 12 ~~~iP~~--l~~Re~ei~~l-~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN 79 (366)
T COG1474 12 EDYIPEE--LPHREEEINQL-ASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN 79 (366)
T ss_pred CCCCccc--ccccHHHHHHH-HHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe
Confidence 4444455 89999999999 444433332 2445579999999999999999999998422 2 57788
Q ss_pred cchhhhhc---------------cchhH-HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHH
Q 004550 289 GPEVLSKF---------------VGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 352 (745)
Q Consensus 289 ~~~l~~~~---------------~g~~e-~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~ 352 (745)
|...-+.| .|.+. +....+++..... ....|+++||+|.|..+.+ .+
T Consensus 80 c~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~-------~~~~IvvLDEid~L~~~~~----------~~ 142 (366)
T COG1474 80 CLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK-------GKTVIVILDEVDALVDKDG----------EV 142 (366)
T ss_pred eeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc-------CCeEEEEEcchhhhccccc----------hH
Confidence 86654422 11111 1222222222221 2356999999999985432 46
Q ss_pred HHHHHHhccCccCCCcEEEEEEeCCCC---CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHH
Q 004550 353 VNQLLTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQ 429 (745)
Q Consensus 353 ~~~LL~~~d~~~~~~~v~vI~~tn~~~---~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~ 429 (745)
+..|+...+.. ..++.+|+.+|..+ .+||.+.+.-. ..+|.||+++.+|..+|++...+.-...+.+.+++ ++
T Consensus 143 LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~ 218 (366)
T COG1474 143 LYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LK 218 (366)
T ss_pred HHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HH
Confidence 66676665544 56789999999864 57899987322 33589999999999999999887544343343333 44
Q ss_pred HHH---HHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 430 ELA---ARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 430 ~la---~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
.+| ...+| ..+-.-.+|+.|+..|-++ ....++.++...|..++.
T Consensus 219 lia~~~a~~~G-DAR~aidilr~A~eiAe~~-------------~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 219 LIAALVAAESG-DARKAIDILRRAGEIAERE-------------GSRKVSEDHVREAQEEIE 266 (366)
T ss_pred HHHHHHHHcCc-cHHHHHHHHHHHHHHHHhh-------------CCCCcCHHHHHHHHHHhh
Confidence 333 33444 3344456888898888764 345688888888855543
No 182
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.39 E-value=7.4e-12 Score=147.81 Aligned_cols=217 Identities=12% Similarity=0.147 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccc---cchhhHHHHHH
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIG---LHESTKCAQIV 585 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g---~~~~~~~~~i~ 585 (745)
+.+++....+..............++|+||||||||++++.+|...+.+|+++..... +.| .+.+.....+.
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~ 407 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLI 407 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHH
Confidence 3444444443333333333344569999999999999999999999999988853321 122 11222222445
Q ss_pred HHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc------------CCCCCCcEEEEEecCCCCCCCc
Q 004550 586 KVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEVSFLDS 653 (745)
Q Consensus 586 ~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vI~ttn~~~~l~~ 653 (745)
+.+..+.... .|++|||||++..... ....++|++.++. ++-...++++|||+|... +++
T Consensus 408 ~~l~~~~~~~-~villDEidk~~~~~~------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~ 479 (784)
T PRK10787 408 QKMAKVGVKN-PLFLLDEIDKMSSDMR------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPA 479 (784)
T ss_pred HHHHhcCCCC-CEEEEEChhhcccccC------CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCH
Confidence 5555554344 4899999999863221 1235677777663 112235789999999874 666
Q ss_pred cccccccceEEEcCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHHCC-CCcHHHHHHHHHHHHccccC
Q 004550 654 VGICDAFSVTYHVPTLKTDDAKKVLKQLN---------------VFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 654 ~~l~~rf~~~i~~p~~~~~~~~~Il~~~~---------------~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a~~~~~~ 717 (745)
.+++|+. .+.|++|+.++..+|+++.. .++++-+..++..++ ..++|.+...++......-.
T Consensus 480 -aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~ 557 (784)
T PRK10787 480 -PLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK 557 (784)
T ss_pred -HHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHH
Confidence 5568885 89999999999999987631 244555666666555 66777776666554332211
Q ss_pred CchhhcccCCCCccHhHHHHHHH
Q 004550 718 GAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 718 ~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.....-....-.|+.+++.+.+.
T Consensus 558 ~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 558 QLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHhcCCCceeeecHHHHHHHhC
Confidence 00000001224688888877665
No 183
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=8.5e-12 Score=140.59 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=111.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC------------------------CeEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF------------------------PFVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+.++||+||+|+|||++|+++|+...+ .++.+++. ...+.+.++++.
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-------s~igVd~IReIi 108 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA-------SNNGVDEIRNII 108 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc-------cccCHHHHHHHH
Confidence 34567999999999999999999986532 11222111 112345678877
Q ss_pred HHHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+... ...|++|||+|.+. ....++|+..|+..+. .+++|.+|+.+..+.+ .+++| +..+
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~Lt----------~~A~NaLLKtLEEPp~---~tvfIL~Tt~~~KLl~-TI~SR-cq~i 173 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLS----------TSAWNALLKTLEEPPK---HVVFIFATTEFQKIPL-TIISR-CQRY 173 (605)
T ss_pred HHHHhchhhCCcEEEEEechHhCC----------HHHHHHHHHHHHhCCC---cEEEEEECCChHhhhH-HHHhh-hhhc
Confidence 766543 35699999999874 3456788888887543 4555656666766655 34456 5689
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
+|++++.+++...++. .+...+.+....+...++|++|.+++.++.+....
T Consensus 174 eF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 174 NFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 9999999998877775 34334455556667778999999999999865543
No 184
>PRK04195 replication factor C large subunit; Provisional
Probab=99.39 E-value=9.6e-12 Score=140.92 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=129.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 293 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 293 (745)
+-+|++ +.|.++.++++ +.++..... | .+++++|||||||||||++|+++|+.+ +..++.+++++..
T Consensus 10 P~~l~d--lvg~~~~~~~l-~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r 76 (482)
T PRK04195 10 PKTLSD--VVGNEKAKEQL-REWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQR 76 (482)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEcccccc
Confidence 456888 89999999888 777654321 1 236789999999999999999999998 5667778876542
Q ss_pred hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEE
Q 004550 294 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 373 (745)
Q Consensus 294 ~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~ 373 (745)
. ...++.+...+....+..+ ..+.+|+|||+|.+.... ....++.|+..++. .+..+|.
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~--~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFG--ARRKLILLDEVDGIHGNE---------DRGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred c------HHHHHHHHHHhhccCcccC--CCCeEEEEecCccccccc---------chhHHHHHHHHHHc----CCCCEEE
Confidence 2 2344554444443322211 135699999999986421 11233455555542 3445677
Q ss_pred EeCCCCCCCh-hhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 004550 374 MTNRKDMLDE-ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 450 (745)
Q Consensus 374 ~tn~~~~id~-al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 450 (745)
++|.+..+.+ .+++ | ...|.|+.|+..++..+++..+..... ..++..++.++..+.| |+..++...
T Consensus 136 i~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi---~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 136 TANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGI---ECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred eccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 7888888877 6665 4 347999999999999999988765432 1344567888888765 555544433
No 185
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.38 E-value=5.4e-12 Score=140.21 Aligned_cols=169 Identities=14% Similarity=0.207 Sum_probs=108.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhh-HHHHHHHHHHHHhcCCCeEEEEeccch
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHEST-KCAQIVKVFEDAYKSPLSIIILDDIER 606 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~-~~~~i~~~f~~a~~~~~~il~lDEid~ 606 (745)
.....++||||||+|||+++++++++. +..++.+.+.+ +....... ....+. -|....+ .+.+|+|||++.
T Consensus 134 ~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~-~~~~~~~~~~~~~~~-~~~~~~~-~~dlLiiDDi~~ 210 (405)
T TIGR00362 134 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK-FTNDFVNALRNNKME-EFKEKYR-SVDLLLIDDIQF 210 (405)
T ss_pred ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH-HHHHHHHHHHcCCHH-HHHHHHH-hCCEEEEehhhh
Confidence 344578999999999999999999764 56677775543 22111000 000111 2222222 247999999999
Q ss_pred hhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc--eEEEcCCCCHHHHHHHHHHc-
Q 004550 607 LLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS--VTYHVPTLKTDDAKKVLKQL- 681 (745)
Q Consensus 607 l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~--~~i~~p~~~~~~~~~Il~~~- 681 (745)
+.+. ...++.|+..++.....+ +.+||+++..|..++.. .+++||. ..+.+++|+.+++..|++..
T Consensus 211 l~~~--------~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 211 LAGK--------ERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred hcCC--------HHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 8621 123344555554442333 34566566566655432 5678986 57999999999999999974
Q ss_pred ---cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 682 ---NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 682 ---~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+...++++...+.....+++|.|..++.....
T Consensus 282 ~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 282 EEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLA 316 (405)
T ss_pred HHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44556777777777789999998877766543
No 186
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8.1e-12 Score=141.86 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=134.6
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----Ecc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~----v~~ 289 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+||+||||+|||++|+.+|+.+++..... -.|
T Consensus 12 P~~f~d--ivGq~~v~~~L-~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 12 PKSFSE--LVGQEHVVRAL-TNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 457888 89999988877 6666542 2234689999999999999999999986421100 001
Q ss_pred c-----------hhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 290 P-----------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 290 ~-----------~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
. +++ ..........+|++.+.+.. .|..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~-~p~~~---~~kVvIIDEad~ls-------------~~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQY-APTRG---RFKVYIIDEVHMLS-------------KSAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhh-CcccC---CceEEEEcCcccCC-------------HHHHHHH
Confidence 0 000 00001234457777776643 23322 34699999999884 3356778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..++. ....+++|.+|+.++.+.+.+++ |+ ..++|..++.++..+.+...+++.. ...++..+..++..+.
T Consensus 140 LK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg---i~~~~~al~~la~~s~ 211 (527)
T PRK14969 140 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN---IPFDATALQLLARAAA 211 (527)
T ss_pred HHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888875 34578888888888888888888 76 4789999999988888877665332 1223445677888877
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.+++.+++..+..+
T Consensus 212 G-slr~al~lldqai~~ 227 (527)
T PRK14969 212 G-SMRDALSLLDQAIAY 227 (527)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 677777787777654
No 187
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=9.7e-12 Score=140.17 Aligned_cols=225 Identities=18% Similarity=0.268 Sum_probs=138.4
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 288 (745)
+.++|++.-+|.-....-...+.+...+ + .....++|||++|||||+|++++++.+. +..+.+++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 7899999856665442222223332211 1 1223599999999999999999999873 34567888
Q ss_pred cchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc
Q 004550 289 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 368 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 368 (745)
+.+++..+.........+.|..... .+++|+||||+.+..+.. ....+-.+++. +...+.
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~---------~~DLLlIDDIq~l~gke~--------tqeeLF~l~N~---l~e~gk 411 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYR---------EMDILLVDDIQFLEDKES--------TQEEFFHTFNT---LHNANK 411 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhh---------cCCEEEEehhccccCCHH--------HHHHHHHHHHH---HHhcCC
Confidence 8888877654433322223332221 145999999999863321 11222223322 222233
Q ss_pred EEEEEEeCC-C---CCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHH
Q 004550 369 VLLIGMTNR-K---DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 444 (745)
Q Consensus 369 v~vI~~tn~-~---~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 444 (745)
-+|| ++|. | ..+++.|+++......+.|..||.+.|..||+.++..... ..++..++.|+....+ +.++|+
T Consensus 412 ~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l---~l~~eVi~yLa~r~~r-nvR~Le 486 (617)
T PRK14086 412 QIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL---NAPPEVLEFIASRISR-NIRELE 486 (617)
T ss_pred CEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhccC-CHHHHH
Confidence 3444 5554 3 3478999983333667899999999999999988765431 2344557888888764 678888
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 445 GVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 445 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
.++..-..++... ...++.+....+++.+
T Consensus 487 gaL~rL~a~a~~~--------------~~~itl~la~~vL~~~ 515 (617)
T PRK14086 487 GALIRVTAFASLN--------------RQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHHHhh--------------CCCCCHHHHHHHHHHh
Confidence 8877765544432 1236666666666554
No 188
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=1.7e-11 Score=134.16 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=132.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-.|++ +.|.++.++.+ ++++... ..+..+|||||||+|||++|+++++.+.+..
T Consensus 10 p~~~~~--iig~~~~~~~l-~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 10 PQTFED--VIGQEHIVQTL-KNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred CCcHhh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 567888 88999999888 6665432 2345789999999999999999999985321
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
+..+++. .......++++++.+... |.. +...|++|||+|.+. .
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~-p~~---~~~~vviidea~~l~-------------~ 131 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYA-PSS---GKYKVYIIDEVHMLS-------------K 131 (355)
T ss_pred HHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcC-ccc---CCceEEEEeChhhcC-------------H
Confidence 1112211 012334577777776543 222 234599999999873 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.|+..++. ...++++|.+|+.++.+.+++++ |+. .+++++|+.++..++++.++++... ..++..+..
T Consensus 132 ~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~ 203 (355)
T TIGR02397 132 SAFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGI---KIEDEALEL 203 (355)
T ss_pred HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 345667777764 23467888888888888899988 774 7899999999999999988765431 123455777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~ 452 (745)
++..+.| +.+.+.+.++.+..
T Consensus 204 l~~~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHHh
Confidence 8888766 55666666655544
No 189
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.2e-11 Score=139.28 Aligned_cols=198 Identities=19% Similarity=0.224 Sum_probs=132.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE----Ecc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~----v~~ 289 (745)
+-+|++ +.|.+..++.+ +.++... +.+.++||+||||+|||++|+++|+.+.+..... -.|
T Consensus 12 P~~F~d--IIGQe~iv~~L-~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 12 PHNFKQ--IIGQELIKKIL-VNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 567888 88999988877 6665432 2235799999999999999999999986432110 011
Q ss_pred c-----------hhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 290 P-----------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 290 ~-----------~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
. ++. +......-..+|.+.+.+... |..+ ...|++|||+|.|. ....+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~-P~~~---~~KVIIIDEad~Lt-------------~~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYL-PTTF---KYKVYIIDEAHMLS-------------TSAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhc-hhhC---CcEEEEEechHhCC-------------HHHHHHH
Confidence 1 110 000011233467776665543 2222 23599999999884 2245678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+. ....+++|.+|+.+..+.+.+++ |+. .++|+.|+.++....++..+.+... -.++..+..++..+.
T Consensus 140 LKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~ 211 (605)
T PRK05896 140 LKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 887774 34578888888889999999998 765 7899999999999888877654321 123445778888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVS 452 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~ 452 (745)
| +.+++.++++....
T Consensus 212 G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 212 G-SLRDGLSILDQLST 226 (605)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 6 66666666665443
No 190
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.8e-11 Score=139.77 Aligned_cols=199 Identities=17% Similarity=0.237 Sum_probs=133.7
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
.-+|++ |.|.+..++.| +.++...- .+..+||+||+|||||++|+++|+.+++....
T Consensus 12 P~~f~d--viGQe~vv~~L-~~~l~~~r------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 12 PRSFSE--MVGQEHVVQAL-TNALTQQR------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 467888 77888887777 66665432 23458999999999999999999998642100
Q ss_pred ----EEccchh--------hh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhH
Q 004550 286 ----IVNGPEV--------LS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 351 (745)
Q Consensus 286 ----~v~~~~l--------~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 351 (745)
.-+|..+ +. .........+|++.+.+... |..+ ...|++|||+|.|. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~-p~~g---~~KV~IIDEvh~Ls-------------~~ 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYK-PVQG---RFKVFMIDEVHMLT-------------NT 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhC-cccC---CceEEEEEChhhCC-------------HH
Confidence 0011111 00 00011234567777665432 2222 23599999999984 23
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHH
Q 004550 352 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 431 (745)
Q Consensus 352 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~l 431 (745)
..+.||..++. ....+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.++..+++... ..++..+..|
T Consensus 140 a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~L 211 (618)
T PRK14951 140 AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLL 211 (618)
T ss_pred HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 46678887774 34577888888888899989988 76 47899999999998888877654331 2344457888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 004550 432 AARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 432 a~~t~g~sg~dl~~l~~~A~~~ 453 (745)
++.+.| +.+++.+++..+..+
T Consensus 212 a~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 888886 777777777666544
No 191
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.37 E-value=8.4e-12 Score=127.39 Aligned_cols=179 Identities=18% Similarity=0.220 Sum_probs=115.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 609 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~ 609 (745)
....+++|+||||||||++|++++..+ +.+++.+.+.+.. . ....++.... ...+|+|||++.+..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~-~--------~~~~~~~~~~--~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA-Q--------ADPEVLEGLE--QADLVCLDDVEAIAG 104 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH-H--------hHHHHHhhcc--cCCEEEEeChhhhcC
Confidence 456789999999999999999999765 4567766554421 0 1123333322 236999999999742
Q ss_pred cCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--ccccccc--ceEEEcCCCCHHHHHHHHHHc----
Q 004550 610 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF--SVTYHVPTLKTDDAKKVLKQL---- 681 (745)
Q Consensus 610 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf--~~~i~~p~~~~~~~~~Il~~~---- 681 (745)
. ....+.|..+++.....+ ..+|++++..+..++. ..+.+|| ...+.+|+|+.+++..+++..
T Consensus 105 ~--------~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~ 175 (226)
T TIGR03420 105 Q--------PEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR 175 (226)
T ss_pred C--------hHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence 1 112344555554432222 2355544444443321 2455676 478999999999999998863
Q ss_pred cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 682 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 682 ~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+...+++..+.+...+++++|++..+++.+...+.. ....|+.+.+.+++
T Consensus 176 ~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~--------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 176 GLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLA--------AKRKITIPFVKEVL 225 (226)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHh
Confidence 333455555555557999999999999887654321 22469998887765
No 192
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=1.1e-11 Score=126.65 Aligned_cols=175 Identities=16% Similarity=0.216 Sum_probs=114.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLE 609 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~ 609 (745)
....+++|+||+|||||++|+++++.. +.+++.+.+.+.. ..+. ......+|+|||+|.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-------------~~~~--~~~~~~~liiDdi~~l~- 103 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-------------LAFD--FDPEAELYAVDDVERLD- 103 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-------------HHHh--hcccCCEEEEeChhhcC-
Confidence 445689999999999999999999764 5666666544321 1111 12235789999999863
Q ss_pred cCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC-cccccccc--ceEEEcCCCCHHHHHHHHHH----cc
Q 004550 610 YVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLD-SVGICDAF--SVTYHVPTLKTDDAKKVLKQ----LN 682 (745)
Q Consensus 610 ~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~-~~~l~~rf--~~~i~~p~~~~~~~~~Il~~----~~ 682 (745)
...+..|...++.....+..+++++++..+.... ...+++|| ...+++|+|+.++...++++ .+
T Consensus 104 ---------~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 104 ---------DAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred ---------chHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 2234455555654433333344444443332211 12455787 57999999998888788776 24
Q ss_pred CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 683 VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 683 ~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.-.+++....+...++++++++..+++.....+.. ....||...+.++++
T Consensus 175 v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~--------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 175 LQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLE--------QKRPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHHh
Confidence 44455666666667899999999999886543322 235799999998876
No 193
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=1.9e-11 Score=124.87 Aligned_cols=205 Identities=15% Similarity=0.173 Sum_probs=125.1
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~ 290 (745)
+..+|++.-.|+-+..+..+ +.+.. +.....+++|+||||||||++|+++++.+ .+..+.++++.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l-~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARL-RELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred ChhhhcccccCCcHHHHHHH-HHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 56888886434444444433 55432 23456789999999999999999999886 34456677766
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
++... +.... ...+|+|||+|.+... .. ..|+..++.....+..+
T Consensus 80 ~~~~~------------~~~~~----------~~~~liiDdi~~l~~~----------~~---~~L~~~~~~~~~~~~~~ 124 (227)
T PRK08903 80 SPLLA------------FDFDP----------EAELYAVDDVERLDDA----------QQ---IALFNLFNRVRAHGQGA 124 (227)
T ss_pred HhHHH------------Hhhcc----------cCCEEEEeChhhcCch----------HH---HHHHHHHHHHHHcCCcE
Confidence 54321 11111 1349999999987321 12 22333333333334444
Q ss_pred EEEEeCC-CC--CCChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 004550 371 LIGMTNR-KD--MLDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 371 vI~~tn~-~~--~id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 445 (745)
+|.+++. +. .+.+.+.+ || ...+++++|+.+++..+++.+..... .-.++..++.|++...| +.+++..
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~g-n~~~l~~ 198 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRR-DMPSLMA 198 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccC-CHHHHHH
Confidence 4444443 21 24577776 66 46899999999889898887654432 12344457788886554 7888888
Q ss_pred HHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHH
Q 004550 446 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 485 (745)
Q Consensus 446 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~ 485 (745)
+++.-..++... ...||.....+++.
T Consensus 199 ~l~~l~~~~~~~--------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSLEQ--------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHh--------------CCCCCHHHHHHHHh
Confidence 888755444332 23566666666554
No 194
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.37 E-value=1.1e-11 Score=135.93 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=117.1
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhH-HHHHHHHHHHH----hcCCCeEEEEeccchhh
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTK-CAQIVKVFEDA----YKSPLSIIILDDIERLL 608 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~-~~~i~~~f~~a----~~~~~~il~lDEid~l~ 608 (745)
+..++||+||||||||++|+++|..++.||+.+++....-..+.+.. ...+..++..+ .+..++||||||||++.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 45789999999999999999999999999999977653211122221 22334444332 23567999999999998
Q ss_pred hcCC---CCCcch-HHHHHHHHHHHhcC----CCCC------CcEEEEEecCCCCC------------------------
Q 004550 609 EYVP---IGPRFS-NIISQTMLVLLKRL----PPKG------KKLLVIGTTSEVSF------------------------ 650 (745)
Q Consensus 609 ~~~~---~g~~~~-~~~~~~Ll~~l~~~----~~~~------~~v~vI~ttn~~~~------------------------ 650 (745)
.... .+..++ ..++++|+..|++. ++.+ ...++|.|+|-.-.
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~ 266 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFG 266 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCc
Confidence 6521 122233 45889999999853 2111 23455666554100
Q ss_pred ------------------CC---------ccccccccceEEEcCCCCHHHHHHHHHH----c--------------cCCC
Q 004550 651 ------------------LD---------SVGICDAFSVTYHVPTLKTDDAKKVLKQ----L--------------NVFA 685 (745)
Q Consensus 651 ------------------l~---------~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~--------------~~~~ 685 (745)
+. ...+.+|++.++.|.+++.+++.+|+.. . -.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 267 AEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred cccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 00 0133489999999999999999999972 0 1355
Q ss_pred HHHHHHHHHHC-C-CCcHHHHHHHHHHHHc
Q 004550 686 EEDVDSASEAL-N-DMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 686 ~~d~~~~~~~~-~-~~~ir~ll~~l~~a~~ 713 (745)
++-+..++... . ..++|.|..+++....
T Consensus 347 ~~al~~Ia~~~~~~~~GAR~Lrriie~~l~ 376 (412)
T PRK05342 347 DEALEAIAKKAIERKTGARGLRSILEEILL 376 (412)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHhH
Confidence 66666666653 2 6677777777665543
No 195
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2.2e-11 Score=139.26 Aligned_cols=199 Identities=19% Similarity=0.249 Sum_probs=136.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE------E-
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~------~- 286 (745)
+-+|++ +.|.+...+.+ +.++... +.+..+||+||+|||||++|+.+|+.+++.... .
T Consensus 12 P~~f~~--viGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 12 PQTFED--VVGQEHITKTL-KNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred CCcHHh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 567888 89999988877 6666532 234568999999999999999999998643210 0
Q ss_pred Eccchhh----------hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 287 VNGPEVL----------SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 287 v~~~~l~----------~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
-+|..+. +...+.....++++.+.+... |.. ....|+||||+|.|. ....+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~-p~~---~~~kViIIDE~~~Lt-------------~~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYA-PSE---AKYKVYIIDEVHMLS-------------TGAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhC-ccc---CCeEEEEEECcccCC-------------HHHHHHH
Confidence 0011110 001113345677777776542 322 235699999999883 2356678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..++.. ...+++|.+|+.++.+.+.+++ |+. .++|+.|+.++..+.++..+++... ..++..+..++..+.
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~ 211 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAE 211 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 8877743 4577888888889999999998 765 6889999999999998887765431 123445778888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.++..++++.+..+
T Consensus 212 G-~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 212 G-GMRDALSILDQAISF 227 (559)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 777777777766544
No 196
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.7e-11 Score=136.38 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=130.8
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+.+|++ |.|.+..++.+ +.++... ..+..+|||||||||||++|+++|+.+.+..
T Consensus 10 P~~~~d--vvGq~~v~~~L-~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 10 PITFDE--VVGQEHVKEVL-LAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred CCCHHH--hcChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 567888 89999988877 6666542 2334579999999999999999999985321
Q ss_pred ------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhH
Q 004550 284 ------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 351 (745)
Q Consensus 284 ------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 351 (745)
+..+++.. ......++++.+.+... |.. ..+.|++|||+|.+. ..
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~-p~~---~~~kVVIIDEad~ls-------------~~ 131 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLA-PLR---GGRKVYILDEAHMMS-------------KS 131 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhc-ccc---CCCeEEEEECccccC-------------HH
Confidence 12222211 11234466665544432 221 235699999999763 33
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHH
Q 004550 352 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 431 (745)
Q Consensus 352 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~l 431 (745)
.++.|+..++.. ..++++|.+|+.+..+.+.+++ |+. .++|..|+.++..+.++..+++... -.++..+..+
T Consensus 132 a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~i 203 (504)
T PRK14963 132 AFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLV 203 (504)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 566777777742 3467888888999999999988 765 7999999999999999887765431 1244457788
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 004550 432 AARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 432 a~~t~g~sg~dl~~l~~~A~ 451 (745)
+..+.| +.+++.++++.+.
T Consensus 204 a~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 204 ARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 888876 5566666666543
No 197
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=1.8e-11 Score=142.82 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=125.2
Q ss_pred CCcccccCccccHHHHHH--HHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~ 291 (745)
+-+|++ +.|.+..+.+ .+++++... ...+++||||||||||++|+++++.+. ..+..+++..
T Consensus 24 P~tldd--~vGQe~ii~~~~~L~~~i~~~-------------~~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna~~ 87 (725)
T PRK13341 24 PRTLEE--FVGQDHILGEGRLLRRAIKAD-------------RVGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNAVL 87 (725)
T ss_pred CCcHHH--hcCcHHHhhhhHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHhc-Ccceeehhhh
Confidence 467888 7888887752 336655432 234699999999999999999999884 4455566532
Q ss_pred hhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 292 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
. ..+.+++.++.+....+.. ....+|||||+|.+... ..+.|+..++ .+.+++
T Consensus 88 ~-------~i~dir~~i~~a~~~l~~~---~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE----~g~IiL 140 (725)
T PRK13341 88 A-------GVKDLRAEVDRAKERLERH---GKRTILFIDEVHRFNKA-------------QQDALLPWVE----NGTITL 140 (725)
T ss_pred h-------hhHHHHHHHHHHHHHhhhc---CCceEEEEeChhhCCHH-------------HHHHHHHHhc----CceEEE
Confidence 1 1123455555443221111 12459999999998421 2334555544 256788
Q ss_pred EEEeCC--CCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHcccc----ccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 004550 372 IGMTNR--KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 372 I~~tn~--~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~----~~~~l~~~~~l~~la~~t~g~sg~dl~~ 445 (745)
|++|+. ...+++++++ |. ..+.+++++.+++..|++..+.... ......++..++.|++.+.| +.+++.+
T Consensus 141 I~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 141 IGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 887743 3468899998 64 3689999999999999998876321 11112344457888888854 6777878
Q ss_pred HHHHHHH
Q 004550 446 VAKSAVS 452 (745)
Q Consensus 446 l~~~A~~ 452 (745)
+++.+..
T Consensus 217 ~Le~a~~ 223 (725)
T PRK13341 217 ALELAVE 223 (725)
T ss_pred HHHHHHH
Confidence 8777663
No 198
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.8e-11 Score=133.66 Aligned_cols=174 Identities=15% Similarity=0.199 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHH----hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC----------------------eEEE
Q 004550 513 HKHIYQRAMLLVEQVK----VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP----------------------FVKI 566 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~----~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~----------------------~i~v 566 (745)
.+++++.+...+..-+ ..+...+.++||+||||+|||++|+++|....+. -+.+
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~ 89 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRV 89 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 3445555554444321 1122356789999999999999999999764332 1222
Q ss_pred eccccccccchhhHHHHHHHHHHHHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEE
Q 004550 567 ISAESMIGLHESTKCAQIVKVFEDAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVI 642 (745)
Q Consensus 567 ~~~~~l~g~~~~~~~~~i~~~f~~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI 642 (745)
..++ | ..-+.+.++++++.++.. +..|+||||+|++. ....++|+..|+..+ ...++|+
T Consensus 90 i~~~---~--~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------~~aanaLLk~LEep~--~~~~fIL 152 (394)
T PRK07940 90 VAPE---G--LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------ERAANALLKAVEEPP--PRTVWLL 152 (394)
T ss_pred eccc---c--ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC----------HHHHHHHHHHhhcCC--CCCeEEE
Confidence 2222 1 112345689999887643 45799999999984 344567888887643 3456666
Q ss_pred EecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHH
Q 004550 643 GTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 707 (745)
Q Consensus 643 ~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~ 707 (745)
+|++ ++.+.+ .+++| +..++|++|+.+++.+.|.+....+++. ...+...++|++..++.+
T Consensus 153 ~a~~-~~~llp-TIrSR-c~~i~f~~~~~~~i~~~L~~~~~~~~~~-a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 153 CAPS-PEDVLP-TIRSR-CRHVALRTPSVEAVAEVLVRRDGVDPET-ARRAARASQGHIGRARRL 213 (394)
T ss_pred EECC-hHHChH-HHHhh-CeEEECCCCCHHHHHHHHHHhcCCCHHH-HHHHHHHcCCCHHHHHHH
Confidence 6666 666666 34455 5799999999999999997543455544 444566677766655443
No 199
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.36 E-value=3.4e-11 Score=139.27 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=117.7
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEecccc----------ccccchhhHHHHHHHHHHH---
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES----------MIGLHESTKCAQIVKVFED--- 590 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~----------l~g~~~~~~~~~i~~~f~~--- 590 (745)
.+.+++|+||||||||++|++++... +.+|+.+++... ++|.......+..++.+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 34679999999999999999998544 457888876542 1111100000011111111
Q ss_pred -------HhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC-------------------------CCCCc
Q 004550 591 -------AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-------------------------PKGKK 638 (745)
Q Consensus 591 -------a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-------------------------~~~~~ 638 (745)
.......+|||||++.|- ...++.|+..|+.-. .....
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld----------~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~ 323 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELD----------PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPAD 323 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCC----------HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccce
Confidence 011234699999998873 445556666664310 01224
Q ss_pred EEEEEec-CCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 639 LLVIGTT-SEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 639 v~vI~tt-n~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+++|++| +.++.+++ .+++||. .++|++++.+|+..|+++. +...++++..++..++. +.|++++.++.+..
T Consensus 324 ~VLI~aTt~~~~~l~~-aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~ 400 (615)
T TIGR02903 324 FVLIGATTRDPEEINP-ALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYG 400 (615)
T ss_pred EEEEEeccccccccCH-HHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 5666554 55766776 4667876 6789999999999999974 22234567777777765 66899998876643
Q ss_pred cccCCchh-hcccCCCCccHhHHHHHHH
Q 004550 714 GEQGGAAE-AIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 714 ~~~~~~~~-~~~~~~~~I~~~~~~~al~ 740 (745)
.+..+... +...+...|+.+|+.++++
T Consensus 401 ~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 401 YALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 32100000 0012335799999999886
No 200
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.2e-11 Score=139.88 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=113.6
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEE--------E-----eccccccccc-hhhHHHHHHHHHHHHhc----C
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK--------I-----ISAESMIGLH-ESTKCAQIVKVFEDAYK----S 594 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~--------v-----~~~~~l~g~~-~~~~~~~i~~~f~~a~~----~ 594 (745)
..+..+||+||+|+|||++|+++|....+.--. . ..++.+.+.. ...+...++++.+.+.. +
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 345667999999999999999999876442100 0 0111111111 11234568888877754 4
Q ss_pred CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHH
Q 004550 595 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDA 674 (745)
Q Consensus 595 ~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~ 674 (745)
...|++|||+|.|. ....++|+..|+..+. .+++|.+|+.++.+.+ .+++|+ .+++|.+++.+++
T Consensus 118 ~~KV~IIDEa~~LT----------~~A~NALLKtLEEPP~---~tifILaTte~~KLl~-TI~SRc-q~ieF~~L~~eeI 182 (725)
T PRK07133 118 KYKIYIIDEVHMLS----------KSAFNALLKTLEEPPK---HVIFILATTEVHKIPL-TILSRV-QRFNFRRISEDEI 182 (725)
T ss_pred CCEEEEEEChhhCC----------HHHHHHHHHHhhcCCC---ceEEEEEcCChhhhhH-HHHhhc-eeEEccCCCHHHH
Confidence 55799999999974 4467788888876533 4555656677776665 345564 6999999999998
Q ss_pred HHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 675 KKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 675 ~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
...++. .+...+.+....+...++|++|.++.+++.+...
T Consensus 183 ~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y 226 (725)
T PRK07133 183 VSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIF 226 (725)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 877765 3444455666677788899999999999976543
No 201
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-11 Score=136.71 Aligned_cols=184 Identities=16% Similarity=0.266 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccc------------cccccchhhHH
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTKC 581 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~------------~l~g~~~~~~~ 581 (745)
.++.+....++..-+-.+....+-++|+||||+|||++|+.+|..++-.|.++.-.- .++|--.|
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPG--- 493 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPG--- 493 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCCh---
Confidence 445555555554433344455567899999999999999999999999999884221 13444444
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc------------CCCCCCcEEEEEecCCCC
Q 004550 582 AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR------------LPPKGKKLLVIGTTSEVS 649 (745)
Q Consensus 582 ~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~------------~~~~~~~v~vI~ttn~~~ 649 (745)
.+-+.++...-..| +++|||||++..... | ---++||++|+- ++-.-.+|++|||.|..+
T Consensus 494 -kiIq~LK~v~t~NP-liLiDEvDKlG~g~q-G-----DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id 565 (906)
T KOG2004|consen 494 -KIIQCLKKVKTENP-LILIDEVDKLGSGHQ-G-----DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID 565 (906)
T ss_pred -HHHHHHHhhCCCCc-eEEeehhhhhCCCCC-C-----ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc
Confidence 34445555554454 889999999962222 2 123456666653 222345899999999999
Q ss_pred CCCccccccccceEEEcCCCCHHHHHHHHHHcc---------------CCCHHHHHHHHHHCC-CCcHHHHHHHHHH
Q 004550 650 FLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLN---------------VFAEEDVDSASEALN-DMPIKKLYMLIEM 710 (745)
Q Consensus 650 ~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~---------------~~~~~d~~~~~~~~~-~~~ir~ll~~l~~ 710 (745)
.+.+ .|++|.. .|+++-|..+|-.+|++++. ..+++.+..++..++ ..++|.|-.-++.
T Consensus 566 tIP~-pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 566 TIPP-PLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred cCCh-hhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9988 5557755 89999999999999999741 345566777888877 6677776554443
No 202
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.9e-11 Score=136.31 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=132.6
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE----EEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----IVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~----~v~~ 289 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+||+||||||||++|+.+|+.+.+.... .-.|
T Consensus 12 P~~f~d--iiGq~~~v~~L-~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 12 PQSFAE--VAGQQHALNSL-VHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred cCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 467888 89999999888 5666442 223458999999999999999999988642100 0000
Q ss_pred -----------chhhh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 290 -----------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 290 -----------~~l~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
++++. .........++++.+.+... |..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~-p~~g---~~kViIIDEa~~ls-------------~~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM-PSQG---RYKVYLIDEVHMLS-------------KQSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechhhcc-------------HHHHHHH
Confidence 01100 00001123456666655432 2222 24599999999884 3356678
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..|+. ....+++|++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+++.. ...++..+..++..+.
T Consensus 140 LK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 140 LKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888874 33567788888888888888988 76 4899999999998888887665432 1234455778888886
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.+++.++++.+..+
T Consensus 212 G-dlR~alnlLek~i~~ 227 (546)
T PRK14957 212 G-SLRDALSLLDQAISF 227 (546)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 777777777776644
No 203
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=2.5e-11 Score=132.71 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=118.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+..+||+||||+|||++|+++|.....+ ++.++.. ...+...+++++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 106 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA-------SNNGVDDIREIL 106 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc-------ccCCHHHHHHHH
Confidence 445678999999999999999999775322 2222111 112344677888
Q ss_pred HHHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+... ...|++|||+|.+. ....+.|+..++..+. .+++|.+|+.++.+.+ .+++|+ ..+
T Consensus 107 ~~~~~~p~~~~~~vviidea~~l~----------~~~~~~Ll~~le~~~~---~~~lIl~~~~~~~l~~-~l~sr~-~~~ 171 (355)
T TIGR02397 107 DNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNALLKTLEEPPE---HVVFILATTEPHKIPA-TILSRC-QRF 171 (355)
T ss_pred HHHhcCcccCCceEEEEeChhhcC----------HHHHHHHHHHHhCCcc---ceeEEEEeCCHHHHHH-HHHhhe-eEE
Confidence 876543 34699999999874 3455667777766432 4555556677765554 355665 589
Q ss_pred EcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+|++|+.+++.+++.. .+...+++....+....+++.+.+.+.++.+..... ..|+.+++.+++.
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-----------~~it~~~v~~~~~ 240 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN-----------GNITYEDVNELLG 240 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-----------CCCCHHHHHHHhC
Confidence 9999999999888875 343445566666666778999999999987765431 2377777766553
No 204
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=3.2e-11 Score=135.30 Aligned_cols=168 Identities=16% Similarity=0.112 Sum_probs=111.4
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------eEEE---------ecccccccc-chhhHHHHHHHHHHHHhc--
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------FVKI---------ISAESMIGL-HESTKCAQIVKVFEDAYK-- 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~i~v---------~~~~~l~g~-~~~~~~~~i~~~f~~a~~-- 593 (745)
..+..+|||||+|+|||++|+++|+...+. +... ..++.+-+. ......+.++++.+.+..
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P 113 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKP 113 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCc
Confidence 344556999999999999999999765321 0000 001111110 011124567777765432
Q ss_pred --CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 594 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 594 --~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
+...|++|||+|++. ...+++|+..|+..+. .+.+|.+|+.+..+.+ .+++| +..++|.+++.
T Consensus 114 ~~~~~KVvIIDEad~Lt----------~~A~NALLK~LEEpp~---~t~FIL~ttd~~kL~~-tI~SR-c~~~~F~~Ls~ 178 (535)
T PRK08451 114 SMARFKIFIIDEVHMLT----------KEAFNALLKTLEEPPS---YVKFILATTDPLKLPA-TILSR-TQHFRFKQIPQ 178 (535)
T ss_pred ccCCeEEEEEECcccCC----------HHHHHHHHHHHhhcCC---ceEEEEEECChhhCch-HHHhh-ceeEEcCCCCH
Confidence 345799999999873 5677888888887633 3344445555666655 45566 78999999998
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 672 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 672 ~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
+++...+++ .+...+++...++...++|++|++++.++.+...+
T Consensus 179 ~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 179 NSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 888777664 44445667777788888999999999998876544
No 205
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.35 E-value=1.8e-11 Score=123.80 Aligned_cols=202 Identities=19% Similarity=0.302 Sum_probs=121.4
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~ 288 (745)
|.++|+..-+|.-.+..-...+.....+- .....++||||+|+|||+|.+++++++. +..+.+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 68999997566555544444343333221 1234599999999999999999998763 34567788
Q ss_pred cchhhhhccchhHH-HHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCC
Q 004550 289 GPEVLSKFVGETEK-NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN 367 (745)
Q Consensus 289 ~~~l~~~~~g~~e~-~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~ 367 (745)
+.++...+...... .+.++.+..+. ..+|+||+++.+..+ ......|...++.+...+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~----------~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~ 130 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRS----------ADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESG 130 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCT----------SSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhc----------CCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhC
Confidence 88877665433222 12222222221 349999999998632 223344444444444556
Q ss_pred cEEEEEEeCCCCC---CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHH
Q 004550 368 NVLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 442 (745)
Q Consensus 368 ~v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 442 (745)
.-+|+.+...|.. +++.|.+ ||. ..+++..|+.+.|.+|++........+ .++..++.|++...+ +.++
T Consensus 131 k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~-~~r~ 204 (219)
T PF00308_consen 131 KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRR-DVRE 204 (219)
T ss_dssp SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTS-SHHH
T ss_pred CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcC-CHHH
Confidence 6666666555654 5788887 664 479999999999999999887755422 344457778887764 7788
Q ss_pred HHHHHHHHHH
Q 004550 443 LEGVAKSAVS 452 (745)
Q Consensus 443 l~~l~~~A~~ 452 (745)
|++++..-..
T Consensus 205 L~~~l~~l~~ 214 (219)
T PF00308_consen 205 LEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 206
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=5.3e-12 Score=151.44 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=118.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhcCCCeEEEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIIL 601 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~~~~~il~l 601 (745)
....+++|+||||||||++|+.+|... +.+++.++....+.| .+.++.++.++++|+.+.+..++||||
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI 277 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345688999999999999999999764 467888776655544 456777889999999998888899999
Q ss_pred eccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHHH
Q 004550 602 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAKK 676 (745)
Q Consensus 602 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~~ 676 (745)
||||.|.+.+...+. ..+.+.|...+. ...+.+||+|+..+. .|+ .+.+||. .+.++.|+.++...
T Consensus 278 DEih~l~~~g~~~g~--~~~a~lLkp~l~-----rg~l~~IgaTt~~ey~~~ie~D~-aL~rRf~-~I~v~ep~~~e~~a 348 (821)
T CHL00095 278 DEVHTLIGAGAAEGA--IDAANILKPALA-----RGELQCIGATTLDEYRKHIEKDP-ALERRFQ-PVYVGEPSVEETIE 348 (821)
T ss_pred ecHHHHhcCCCCCCc--ccHHHHhHHHHh-----CCCcEEEEeCCHHHHHHHHhcCH-HHHhcce-EEecCCCCHHHHHH
Confidence 999999865432211 123333444333 246889999987653 344 5667886 57999999999888
Q ss_pred HHHHc--------cCCCHHHHHHHHHHCC------CCcHHHHHHHHHHHHcc
Q 004550 677 VLKQL--------NVFAEEDVDSASEALN------DMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 677 Il~~~--------~~~~~~d~~~~~~~~~------~~~ir~ll~~l~~a~~~ 714 (745)
|++.. ....++|+...+..++ ..-..+++++++.|...
T Consensus 349 ILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 349 ILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 88752 2223444444444433 12245677777776543
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=1.2e-11 Score=147.78 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=113.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhc-CCCeEEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYK-SPLSIII 600 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~-~~~~il~ 600 (745)
....+++|+||||||||++|+.+|... +..++.+.......| .+.++.+..++++|+.+++ ..+.|||
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILf 285 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILF 285 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 344678999999999999999999754 234555544432223 4556677889999999864 4578999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
||||+.+.+.+...+. ...-+.|+..|. ...+.+||||+..+. .|+ .+.+||. .|.|++|+.++..
T Consensus 286 IDEih~l~~~g~~~~~--~d~~n~Lkp~l~-----~G~l~~IgaTT~~e~~~~~~~d~-AL~rRf~-~i~v~eps~~~~~ 356 (852)
T TIGR03345 286 IDEAHTLIGAGGQAGQ--GDAANLLKPALA-----RGELRTIAATTWAEYKKYFEKDP-ALTRRFQ-VVKVEEPDEETAI 356 (852)
T ss_pred EeChHHhccCCCcccc--ccHHHHhhHHhh-----CCCeEEEEecCHHHHhhhhhccH-HHHHhCe-EEEeCCCCHHHHH
Confidence 9999999865432211 112223433332 347899999987543 556 5567995 8999999999999
Q ss_pred HHHHHc--------c-CCCHHHHHHHHHHCC-----CCcHHHHHHHHHHHHcc
Q 004550 676 KVLKQL--------N-VFAEEDVDSASEALN-----DMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 676 ~Il~~~--------~-~~~~~d~~~~~~~~~-----~~~ir~ll~~l~~a~~~ 714 (745)
+||+.. + .++++.+..++.... ..-..+++++++.|+..
T Consensus 357 ~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 357 RMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred HHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHH
Confidence 997642 1 234554444443332 22344567777776543
No 208
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.8e-11 Score=139.09 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=135.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--EEccch
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~~ 291 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+|||||+|+|||++|+++|+.+.+.... .-.|..
T Consensus 14 P~~f~d--IiGQe~~v~~L-~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 14 PKTFDD--IVGQDHIVQTL-KNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 668888 89999988887 7766542 223468999999999999999999998643210 001111
Q ss_pred h---hhh----c--cc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHh
Q 004550 292 V---LSK----F--VG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 359 (745)
Q Consensus 292 l---~~~----~--~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~ 359 (745)
+ .+. + -+ .....+|++.+.+... |.. +...|++|||+|.|. ....+.||..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~-P~~---g~~KV~IIDEa~~LT-------------~~A~NALLKt 141 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNL-PTQ---SKYKIYIIDEVHMLS-------------KSAFNALLKT 141 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhc-hhc---CCCEEEEEEChhhCC-------------HHHHHHHHHH
Confidence 1 000 0 01 1244578877766543 222 234599999999884 2356778888
Q ss_pred ccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCC
Q 004550 360 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 439 (745)
Q Consensus 360 ~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 439 (745)
|+. ....+++|++|+.++.|.+.+++ |+. .++|.+|+.++..++++..+.+... ...+..+..++..+.| +
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSG-S 212 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-C
Confidence 884 34578888888999999999998 875 7999999999999888876654331 1233347778888876 6
Q ss_pred HHHHHHHHHHHHH
Q 004550 440 GAELEGVAKSAVS 452 (745)
Q Consensus 440 g~dl~~l~~~A~~ 452 (745)
.+++..+++.+..
T Consensus 213 lR~AlslLekl~~ 225 (725)
T PRK07133 213 LRDALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHHHH
Confidence 6677666666543
No 209
>PLN03025 replication factor C subunit; Provisional
Probab=99.35 E-value=3.8e-11 Score=129.02 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=121.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~~ 289 (745)
+-+|++ +-|.++.++.+ +.++... ...++|||||||||||++|+++|+++.+. .+..++.
T Consensus 9 P~~l~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 9 PTKLDD--IVGNEDAVSRL-QVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 567888 78888888777 6554422 12359999999999999999999998432 2344555
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
++..+ ...+++........... .....+.|++|||+|.+... ..+.|+..|+... ...
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~-~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~--~~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVT-LPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS--NTT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhcccc-CCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc--CCc
Confidence 43321 11333333322111100 00123569999999998522 2344555555322 345
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 448 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 448 (745)
.+|.+||.++.+.+++++ |+. .++|+.|+.++....++..+++... ..++..+..++..+.| ..+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi---~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKV---PYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred eEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 677788888899999998 764 7899999999999999877654321 2344567888887765 4444444444
No 210
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.6e-11 Score=139.44 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=134.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
+-+|++ |.|.+..++.+ +.++... +.+..+|||||+|+|||++|+++|+.+.+..
T Consensus 12 P~~f~~--iiGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 12 PQTFSD--LTGQEHVSRTL-QNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 567888 89999888877 6665432 2345689999999999999999999986421
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+++.+ ......++++.+.+... |..+ ...|+||||+|.|. .
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~-p~~~---~~KVvIIdev~~Lt-------------~ 133 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYL-PSRS---RYKIFIIDEVHMLS-------------T 133 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhc-cccC---CceEEEEEChhhCC-------------H
Confidence 11111111 12234577777666432 2222 24599999999884 2
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.||..|+. ...++++|.+|+.++.|.+.+++ |+. .++|..++.++....+...+++... -.++..+..
T Consensus 134 ~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~ 205 (576)
T PRK14965 134 NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGI---SISDAALAL 205 (576)
T ss_pred HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHH
Confidence 346778888874 34578888899999999999998 764 7889999998888887766654321 134456778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
+++.+.| +.+++.+++..+..+
T Consensus 206 la~~a~G-~lr~al~~Ldqliay 227 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLDQVLAF 227 (576)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 8888886 666776676665544
No 211
>PRK08727 hypothetical protein; Validated
Probab=99.35 E-value=4.5e-11 Score=122.32 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
+..+|++. ++|-...+..+ +..... .....++|+||+|||||+++++++..+. +....+++..
T Consensus 14 ~~~~f~~f-~~~~~n~~~~~-~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 14 SDQRFDSY-IAAPDGLLAQL-QALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CcCChhhc-cCCcHHHHHHH-HHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 67889986 56666555544 221111 1234599999999999999999988763 2333445543
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
++. ..+.+.++.... ..+|+|||++.+..... ....+-.+++.. ... +..
T Consensus 79 ~~~--------~~~~~~~~~l~~----------~dlLiIDDi~~l~~~~~--------~~~~lf~l~n~~---~~~-~~~ 128 (233)
T PRK08727 79 AAA--------GRLRDALEALEG----------RSLVALDGLESIAGQRE--------DEVALFDFHNRA---RAA-GIT 128 (233)
T ss_pred Hhh--------hhHHHHHHHHhc----------CCEEEEeCcccccCChH--------HHHHHHHHHHHH---HHc-CCe
Confidence 322 223334433322 34999999998863221 112222333332 222 333
Q ss_pred EEEEeC-CCCCC---ChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHH
Q 004550 371 LIGMTN-RKDML---DEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 444 (745)
Q Consensus 371 vI~~tn-~~~~i---d~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 444 (745)
+|.++| .|..+ ++.+++ || ...+.+++|+.+++.+|++.+..... ...++..++.|+..+.| ..+.+.
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~r-d~r~~l 202 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGER-ELAGLV 202 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCC-CHHHHH
Confidence 555554 45544 799988 75 56789999999999999998664322 12445567888888774 444444
Q ss_pred HHHHHHH
Q 004550 445 GVAKSAV 451 (745)
Q Consensus 445 ~l~~~A~ 451 (745)
++++...
T Consensus 203 ~~L~~l~ 209 (233)
T PRK08727 203 ALLDRLD 209 (233)
T ss_pred HHHHHHH
Confidence 4455443
No 212
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1.5e-11 Score=136.75 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=109.0
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
+..+++||||||+|||++++++|+.. +..++.+...+ +.......-...-...|...++ ...+|+||||+.+.+.
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~-f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL-FTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK 217 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH-HHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC
Confidence 44679999999999999999999754 56777664432 2211100000001123544443 4479999999998521
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc--eEEEcCCCCHHHHHHHHHHc----c
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS--VTYHVPTLKTDDAKKVLKQL----N 682 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~--~~i~~p~~~~~~~~~Il~~~----~ 682 (745)
...++.|...++.+...+ +.+|++++..|..+... .+++||. ..+.+++|+.+++..|+++. +
T Consensus 218 --------~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 218 --------GATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred --------hhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 223444545444432223 44566555556554422 5668995 89999999999999999973 3
Q ss_pred CCCHHHHHHHHHHCCCCcHHHHHHHHHHHH
Q 004550 683 VFAEEDVDSASEALNDMPIKKLYMLIEMAA 712 (745)
Q Consensus 683 ~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~ 712 (745)
...++|+...+.....+++|+|...++...
T Consensus 289 ~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 289 IRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred CCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 455677777666677899999999888773
No 213
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.2e-11 Score=139.90 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEecc
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISA 569 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~ 569 (745)
+++.+.+...+.. .+.+..+||+||+|+|||++|+++|+...+. ++.+++.
T Consensus 22 ~~v~~~L~~~i~~-----~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~ 96 (576)
T PRK14965 22 EHVSRTLQNAIDT-----GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA 96 (576)
T ss_pred HHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc
Confidence 3445454443332 2445667999999999999999999876432 2222211
Q ss_pred ccccccchhhHHHHHHHHHHHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEec
Q 004550 570 ESMIGLHESTKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTT 645 (745)
Q Consensus 570 ~~l~g~~~~~~~~~i~~~f~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~tt 645 (745)
. ....+.++++.+.+.. +...|+||||+|.|. ....++|+..|+..++ .+++|.+|
T Consensus 97 s-------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt----------~~a~naLLk~LEepp~---~~~fIl~t 156 (576)
T PRK14965 97 S-------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS----------TNAFNALLKTLEEPPP---HVKFIFAT 156 (576)
T ss_pred C-------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC----------HHHHHHHHHHHHcCCC---CeEEEEEe
Confidence 1 1234567787776643 345799999999974 4566788888887543 45555566
Q ss_pred CCCCCCCccccccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchh
Q 004550 646 SEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAE 721 (745)
Q Consensus 646 n~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~ 721 (745)
+.++.+.+ .+++| +..++|.+++.+++...+.. .+...+++....+...++|++|.+++.++.+....
T Consensus 157 ~~~~kl~~-tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~------ 228 (576)
T PRK14965 157 TEPHKVPI-TILSR-CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFC------ 228 (576)
T ss_pred CChhhhhH-HHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------
Confidence 67766655 34455 56999999998887766654 45555666777777888999999999998765443
Q ss_pred hcccCCCCccHhHHHHH
Q 004550 722 AIYSGREKIKISHFYDC 738 (745)
Q Consensus 722 ~~~~~~~~I~~~~~~~a 738 (745)
+ ..|+.+++.+.
T Consensus 229 ----g-~~It~edV~~l 240 (576)
T PRK14965 229 ----G-DAVGDDDVAEL 240 (576)
T ss_pred ----c-CCCCHHHHHHH
Confidence 1 23676666554
No 214
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=7.4e-12 Score=136.17 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=126.8
Q ss_pred cceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------c
Q 004550 504 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------M 572 (745)
Q Consensus 504 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l 572 (745)
..++.-.....++++.++++. ....++|+.|.+||||..+|+++.+.+ +.|||+++|+.. +
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A--------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA--------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhc--------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 344444444444444443322 345789999999999999999999876 689999998753 4
Q ss_pred cccchhhHHHHHH----HHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC--------CCCCCcEE
Q 004550 573 IGLHESTKCAQIV----KVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL--------PPKGKKLL 640 (745)
Q Consensus 573 ~g~~~~~~~~~i~----~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~--------~~~~~~v~ 640 (745)
+|+-.|....+.+ ..|+.|.. .-||||||..+. -.++..||..|..- .+...+|-
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t~~~~vDVR 383 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGTKPIPVDVR 383 (560)
T ss_pred hCcCCccccccccCCCCcceeeccC---CeEEehhhccCC----------HHHHHHHHHHHhhceEEecCCCCceeeEEE
Confidence 6665543322222 36666655 459999998763 44555666555442 12234789
Q ss_pred EEEecCCCC--CCCccccc----cccc-eEEEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCC
Q 004550 641 VIGTTSEVS--FLDSVGIC----DAFS-VTYHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDM 699 (745)
Q Consensus 641 vI~ttn~~~--~l~~~~l~----~rf~-~~i~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~ 699 (745)
||||||+.- ++..-.+| -|.+ ..|.+||+. .+|+..+.... ...+++.+..+.+..++|
T Consensus 384 IIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPG 463 (560)
T COG3829 384 IIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPG 463 (560)
T ss_pred EEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCc
Confidence 999999852 22222222 2333 337888888 77877776652 256777777777777899
Q ss_pred cHHHHHHHHHHHHccc
Q 004550 700 PIKKLYMLIEMAAQGE 715 (745)
Q Consensus 700 ~ir~ll~~l~~a~~~~ 715 (745)
++|+|-++++++....
T Consensus 464 NVRELeNviER~v~~~ 479 (560)
T COG3829 464 NVRELENVIERAVNLV 479 (560)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999999998643
No 215
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=4.5e-11 Score=122.29 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=122.4
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
+..+|++.-.|. ..+..+.+++..... +-.+..+++||||+|||||+|++++++++. +..+.+++..
T Consensus 14 ~~~tfdnF~~~~-~~~a~~~~~~~~~~~----------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 14 DDATFANYYPGA-NAAALGYVERLCEAD----------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CcccccccCcCC-hHHHHHHHHHHhhcc----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 688999974443 433333323322111 112336799999999999999999998763 4456677777
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
++.... ..+.+.... ..+|+|||++.+..+. ... ..|...++.....+..+
T Consensus 83 ~~~~~~--------~~~~~~~~~----------~d~LiiDDi~~~~~~~--------~~~---~~Lf~l~n~~~~~g~~i 133 (234)
T PRK05642 83 ELLDRG--------PELLDNLEQ----------YELVCLDDLDVIAGKA--------DWE---EALFHLFNRLRDSGRRL 133 (234)
T ss_pred HHHhhh--------HHHHHhhhh----------CCEEEEechhhhcCCh--------HHH---HHHHHHHHHHHhcCCEE
Confidence 665421 122222221 2399999999885321 111 22334444334445667
Q ss_pred EEEEeCCCCC---CChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 004550 371 LIGMTNRKDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 371 vI~~tn~~~~---id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 445 (745)
+|+++..|.. ..|.+++ || ...+.+..|+.+++.++++.+..... ...++..++.+++...+ +.+.+..
T Consensus 134 lits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~---~~l~~ev~~~L~~~~~~-d~r~l~~ 207 (234)
T PRK05642 134 LLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG---LHLTDEVGHFILTRGTR-SMSALFD 207 (234)
T ss_pred EEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 7777765544 3688988 77 46788899999999999996654332 12345557788888875 7778877
Q ss_pred HHHHHHHHHH
Q 004550 446 VAKSAVSFAL 455 (745)
Q Consensus 446 l~~~A~~~a~ 455 (745)
+++.-...++
T Consensus 208 ~l~~l~~~~l 217 (234)
T PRK05642 208 LLERLDQASL 217 (234)
T ss_pred HHHHHHHHHH
Confidence 7776544443
No 216
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=1.9e-11 Score=127.42 Aligned_cols=133 Identities=26% Similarity=0.362 Sum_probs=90.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc------hhhhhccchhHHHHHHHH--------------------
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLSKFVGETEKNIRDLF-------------------- 308 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~------~l~~~~~g~~e~~i~~~f-------------------- 308 (745)
..++||+||||||||++|+++|+.+ +.++..++|. ++++.+.+........-|
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4579999999999999999999987 5677777654 344444332211111111
Q ss_pred HHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc--------------cCCCcEEEEEE
Q 004550 309 ADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------------ESLNNVLLIGM 374 (745)
Q Consensus 309 ~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--------------~~~~~v~vI~~ 374 (745)
..|.. ...+|+|||+|.+.+ .+.+.|+..|+.- ..+.++.+|+|
T Consensus 100 ~~A~~---------~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 100 TLAVR---------EGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHHHH---------cCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEe
Confidence 11111 124999999998642 2344455555421 12347889999
Q ss_pred eCCCC-----CCChhhhCCCCccceEEecCCCHHHHHHHHHHHH
Q 004550 375 TNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 413 (745)
Q Consensus 375 tn~~~-----~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~ 413 (745)
+|... .+++++++ ||. .+.++.|+.++-.+|++.+.
T Consensus 158 sN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 99863 46899998 984 79999999999999999875
No 217
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.4e-11 Score=137.33 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=108.6
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchh-hHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHES-TKCAQIVKVFEDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~-~~~~~i~~~f~~a~~~~~~il~lDEid~l~ 608 (745)
..+++||||||||||++++++|++. +..++.+.+.+ +...... -....+. -|...+...+.+|+|||++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~-f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhc
Confidence 4569999999999999999999764 34555554433 2211100 0001112 2333333457899999999986
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc--eEEEcCCCCHHHHHHHHHHc---
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS--VTYHVPTLKTDDAKKVLKQL--- 681 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~--~~i~~p~~~~~~~~~Il~~~--- 681 (745)
+. ...++.|+..++.+...+ +.+|+++...|..+... .+++||. ..+.+++|+.+.+..|+++.
T Consensus 208 ~~--------~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 208 GK--------TGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred Cc--------HHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 31 112333444444432333 34666555666655432 5668885 67899999999999999974
Q ss_pred -cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 682 -NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 682 -~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+...++|+...+.....+++|+|..++.....
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~ 311 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDDNLRRLRGAIIKLLV 311 (440)
T ss_pred cCCCCCHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 34567888888888889999999988776543
No 218
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=4.7e-11 Score=128.36 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=105.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 293 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~ 293 (745)
+-+|++ +.|.++..+.+ +..+... ..|..+||+||||+|||++|+++++.+ +..+..+++.+
T Consensus 17 P~~~~~--~~~~~~~~~~l-~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~~-- 78 (316)
T PHA02544 17 PSTIDE--CILPAADKETF-KSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGSD-- 78 (316)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHh-CccceEeccCc--
Confidence 467888 89999888877 5555421 223456679999999999999999998 45667788765
Q ss_pred hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEE
Q 004550 294 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 373 (745)
Q Consensus 294 ~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~ 373 (745)
.. . ..+++.........+. ...+.+|+|||+|.+... ..... |...++.. ..++.+|.
T Consensus 79 ~~-~----~~i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~~---------~~~~~---L~~~le~~--~~~~~~Il 136 (316)
T PHA02544 79 CR-I----DFVRNRLTRFASTVSL---TGGGKVIIIDEFDRLGLA---------DAQRH---LRSFMEAY--SKNCSFII 136 (316)
T ss_pred cc-H----HHHHHHHHHHHHhhcc---cCCCeEEEEECcccccCH---------HHHHH---HHHHHHhc--CCCceEEE
Confidence 21 1 1222222111111111 123569999999987311 12223 33334432 24678888
Q ss_pred EeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHcc
Q 004550 374 MTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 415 (745)
Q Consensus 374 ~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 415 (745)
+||.++.+++++++ ||. .+.++.|+.+++.++++...+.
T Consensus 137 t~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 137 TANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred EcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999998 885 7899999999999888765443
No 219
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.5e-11 Score=132.83 Aligned_cols=179 Identities=13% Similarity=0.194 Sum_probs=116.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC--------------------------------eEEEeccccccccchhhH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP--------------------------------FVKIISAESMIGLHESTK 580 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~--------------------------------~i~v~~~~~l~g~~~~~~ 580 (745)
..+..+||+||||+|||++|+++|+...+. ++.++ |. ....
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~------~~-~~~~ 108 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFD------AA-SNNS 108 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeec------cc-ccCC
Confidence 345569999999999999999999877552 11111 10 1122
Q ss_pred HHHHHHHHHHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccc
Q 004550 581 CAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 656 (745)
Q Consensus 581 ~~~i~~~f~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l 656 (745)
.+.++++.+.+.. +...|+||||+|.+. ....+.|+..++..++ ..++|+ +|+.+..+-+ .+
T Consensus 109 id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~LLk~LEep~~--~t~~Il-~t~~~~kl~~-tl 174 (397)
T PRK14955 109 VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNAFLKTLEEPPP--HAIFIF-ATTELHKIPA-TI 174 (397)
T ss_pred HHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHHHHHHHhcCCC--CeEEEE-EeCChHHhHH-HH
Confidence 4567776666532 345799999999974 3456677777776433 334444 4455444443 23
Q ss_pred ccccceEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccH
Q 004550 657 CDAFSVTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKI 732 (745)
Q Consensus 657 ~~rf~~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~ 732 (745)
++| +..++|++++.+++.+.++.. +...+++....+...++|++|.+++.++.+...+... .+...|+.
T Consensus 175 ~sR-~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~------~~~~~It~ 247 (397)
T PRK14955 175 ASR-CQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVES------EGEGSIRY 247 (397)
T ss_pred HHH-HHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc------CCCCccCH
Confidence 344 458999999999888777763 4445556666666778999999999999765543110 12346888
Q ss_pred hHHHHHH
Q 004550 733 SHFYDCL 739 (745)
Q Consensus 733 ~~~~~al 739 (745)
+++.+.+
T Consensus 248 ~~v~~~v 254 (397)
T PRK14955 248 DKVAELL 254 (397)
T ss_pred HHHHHHH
Confidence 7776654
No 220
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=5.7e-11 Score=135.94 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=122.6
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEe---------------------cccccc-ccchhhHHHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII---------------------SAESMI-GLHESTKCAQIVKVFED 590 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~---------------------~~~~l~-g~~~~~~~~~i~~~f~~ 590 (745)
+.+.++||+||+|+|||++|+++|+...+...... .++.+. ........+.|+++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 45668999999999999999999987654321111 011110 00011235678888887
Q ss_pred HhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEc
Q 004550 591 AYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHV 666 (745)
Q Consensus 591 a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~ 666 (745)
+... ...|+||||+|.+. ....++|+..|+..++ .+.+|.+|+.++.+-+. +++| +..++|
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls----------~~a~naLLKtLEePp~---~~~fIl~tte~~kll~t-I~SR-cq~~~f 188 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLS----------TAAFNALLKTLEEPPP---HVKFIFATTEIRKVPVT-VLSR-CQRFDL 188 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCC----------HHHHHHHHHHHHhCCC---CeEEEEEeCChhhhhHH-HHhh-eeEEEe
Confidence 7533 46799999999974 4567788888887543 33444455555554443 5555 578999
Q ss_pred CCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 667 PTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 667 p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
++++.+++...+++ .+...+++...++...++|++|.+++.++.+.... ...|+.+++.+.+.
T Consensus 189 ~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-----------~g~It~e~V~~llg 255 (598)
T PRK09111 189 RRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG-----------AGEVTAEAVRDMLG 255 (598)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-----------CCCcCHHHHHHHhC
Confidence 99998888777776 34445666677777788999999999998765432 13488888876654
No 221
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=8.5e-11 Score=126.51 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=108.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhhHHHHHHHHHH-HHh-----cCCCeEEEEecc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFE-DAY-----KSPLSIIILDDI 604 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~-~a~-----~~~~~il~lDEi 604 (745)
.+++|+||||||||+++++++... ..+++.++.++.. + ...+++.+. .+. ..++.+|+|||+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~ 111 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER-G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEA 111 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCc
Confidence 368999999999999999999875 2345555333211 1 111222221 121 134569999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHc---
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQL--- 681 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~--- 681 (745)
|.+. ...++.|+..++..+. ...+|+ ++|.+..+.+ .+.+|+. .++|++++.+++..+++..
T Consensus 112 ~~l~----------~~~~~~L~~~le~~~~--~~~lIl-~~~~~~~l~~-~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 112 DNLT----------SDAQQALRRTMEMYSQ--NTRFIL-SCNYSSKIID-PIQSRCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred ccCC----------HHHHHHHHHHHhcCCC--CCeEEE-EeCCccccch-hHHHHhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 9874 3345667777776533 233333 5555544433 3445654 6999999999988888753
Q ss_pred -cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 682 -NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 682 -~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+...+++....+...++|++|.+++.++.+.... ..||.+++.+++.
T Consensus 177 ~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~------------~~it~~~v~~~~~ 224 (319)
T PRK00440 177 EGIEITDDALEAIYYVSEGDMRKAINALQAAAATG------------KEVTEEAVYKITG 224 (319)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHhC
Confidence 3323444455555667899999999999876542 3477777776653
No 222
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.31 E-value=1.4e-10 Score=124.83 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=104.9
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHH---HHh--cCCCeEEEEeccchhh
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFE---DAY--KSPLSIIILDDIERLL 608 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~---~a~--~~~~~il~lDEid~l~ 608 (745)
.+..+||+||||+|||++|+++++..+.+++.++..+ +. ...+++... ... ...+.+|+|||+|.+.
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~---~~-----~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD---CR-----IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc---cc-----HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 4455666999999999999999999888888886654 11 112222111 111 1356899999999873
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH--------
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ-------- 680 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~-------- 680 (745)
.....+.|...++..+ .++.+|.+||.++.+.+ .+++||. .+.|+.|+.+++.++++.
T Consensus 114 ---------~~~~~~~L~~~le~~~---~~~~~Ilt~n~~~~l~~-~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~ 179 (316)
T PHA02544 114 ---------LADAQRHLRSFMEAYS---KNCSFIITANNKNGIIE-PLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGI 179 (316)
T ss_pred ---------CHHHHHHHHHHHHhcC---CCceEEEEcCChhhchH-HHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 1334556666676643 24566778888877766 5667775 789999998887766543
Q ss_pred ---ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHH
Q 004550 681 ---LNVFAEEDVDSASEALNDMPIKKLYMLIEMAA 712 (745)
Q Consensus 681 ---~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~ 712 (745)
.+.-.+++....+.....++.|++++.++...
T Consensus 180 ~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~ 214 (316)
T PHA02544 180 LEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYA 214 (316)
T ss_pred HHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 12222344445555567789999999888665
No 223
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.2e-11 Score=135.77 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=124.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~---------- 283 (745)
.-+|++ |-|.+..++.| ++++...- .+..+||+||||||||++|+.+|+.+.+..
T Consensus 12 P~sf~d--IiGQe~v~~~L-~~ai~~~r------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 12 PQTFAE--VAGQETVKAIL-SRAAQENR------------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHcCC------------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 567888 78988877766 77665421 134799999999999999999999986421
Q ss_pred -------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 -------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+++.. ...-..++.+.+.+... +.. +...||||||+|.|. .
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~-p~~---g~~kVIIIDEad~Lt-------------~ 133 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYA-PME---GRYKVFIIDEAHMLT-------------R 133 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhh-hhc---CCceEEEEEChHhCC-------------H
Confidence 11222210 01122344433333221 111 124599999999984 3
Q ss_pred HHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHH
Q 004550 351 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 430 (745)
Q Consensus 351 ~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~ 430 (745)
...+.|+..|+. ...++++|++|+.++.+.+.+++ |+. .++|+.++.++...+|+..+.+... -.++..++.
T Consensus 134 ~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~l 205 (624)
T PRK14959 134 EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRL 205 (624)
T ss_pred HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 345778888774 33578888899998899988988 765 6899999999999888876654321 134455778
Q ss_pred HHHHcCCCCHHHHHHHHHH
Q 004550 431 LAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 431 la~~t~g~sg~dl~~l~~~ 449 (745)
+++.+.| +.+++.++++.
T Consensus 206 IA~~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 206 IARRAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HHHHcCC-CHHHHHHHHHH
Confidence 8888876 44444444443
No 224
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6.2e-11 Score=134.91 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=131.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC------cEE-
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------PKI- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~------~~~- 286 (745)
+-+|++ |.|.+..++.| +.++... +.+..+||+||+|||||++|+++|+.+++.. +-.
T Consensus 9 P~~f~e--ivGq~~i~~~L-~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 9 PATFAE--VVGQEHVTEPL-SSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 567888 88999988887 6666542 2233589999999999999999999986421 000
Q ss_pred Eccchhhh---------hccc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHH
Q 004550 287 VNGPEVLS---------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 354 (745)
Q Consensus 287 v~~~~l~~---------~~~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 354 (745)
-+|..+.. ..-+ ..-..++++.+.+.. .|..+ ...|+||||+|.|. ....+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~-~P~~~---~~KVvIIDEah~Lt-------------~~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY-APAQS---RYRIFIVDEAHMVT-------------TAGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh-hhhcC---CceEEEEECCCcCC-------------HHHHH
Confidence 00111000 0001 123445655555432 22222 23599999999884 23567
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH
Q 004550 355 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 434 (745)
Q Consensus 355 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~ 434 (745)
.||..|+. ...++++|++|+.++.+.+.+++ |. ..++|..++.++..+.++..+++... ..++..+..++..
T Consensus 137 ALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~ 208 (584)
T PRK14952 137 ALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 78888884 44578888889999999999998 74 47999999999988888877765431 1234456667776
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 004550 435 TKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 435 t~g~sg~dl~~l~~~A~~~ 453 (745)
+.| +.+++.++++....+
T Consensus 209 s~G-dlR~aln~Ldql~~~ 226 (584)
T PRK14952 209 GGG-SPRDTLSVLDQLLAG 226 (584)
T ss_pred cCC-CHHHHHHHHHHHHhc
Confidence 664 677777777765543
No 225
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.31 E-value=4.1e-11 Score=130.61 Aligned_cols=229 Identities=21% Similarity=0.310 Sum_probs=137.6
Q ss_pred ccccHHHHHHHHHHHHHc---cCCC-hhHHhhhCC-CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-h
Q 004550 222 IGGLSAEFADIFRRAFAS---RVFP-PHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-K 295 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~---~~~~-~~~~~~~g~-~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~ 295 (745)
|.|+++.++.+ ..++.. .+.. +.....-++ ....++||+||||||||++|+++|+.+ +.++..+++..+.. .
T Consensus 79 ViGQe~A~~~l-~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l-~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 79 VIGQEQAKKVL-SVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAG 156 (413)
T ss_pred ecCHHHHHHHH-HHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc-CCCeEEechhhccccc
Confidence 89999998877 444311 1110 000000011 123689999999999999999999998 46777788777653 5
Q ss_pred ccchhH-HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcc-hhHHHHHHHHhccCcc---------
Q 004550 296 FVGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE--------- 364 (745)
Q Consensus 296 ~~g~~e-~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~--------- 364 (745)
|+|... ..+..++..+.... ....++||||||+|.+.+++...+....+ ...+.+.||..|+|..
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l----~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDV----EKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccHHHHHHHHHHhCcccH----HhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 788753 33444443221100 01135699999999998765432211111 1256777888777542
Q ss_pred --CCCcEEEEEEeCCC---------------------------C-----------------------CCChhhhCCCCcc
Q 004550 365 --SLNNVLLIGMTNRK---------------------------D-----------------------MLDEALLRPGRLE 392 (745)
Q Consensus 365 --~~~~v~vI~~tn~~---------------------------~-----------------------~id~al~r~gRf~ 392 (745)
...+.++|.|+|-. + .+.|+|+ ||++
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCC
Confidence 12345666666651 0 0235554 4999
Q ss_pred ceEEecCCCHHHHHHHHHHH----Hcccccc----C-CC-CCcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhh
Q 004550 393 VQVEISLPDENGRLQILQIH----TNKMKEN----S-FL-APDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQ 458 (745)
Q Consensus 393 ~~i~i~~Pd~~~r~~Il~~~----~~~~~~~----~-~l-~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~ 458 (745)
..+.|.+.+.++..+|+... .+.+... + .+ .++..++.+++. ...+-.+.|+.+++......+...
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 99999999999999999763 2222110 0 01 123346667765 345667888888888777666543
No 226
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=9.7e-11 Score=131.54 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=131.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC------cE-E
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------PK-I 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~------~~-~ 286 (745)
+-+|++ +-|.+...+.+ +.++... ..+..+|||||||+|||++|+.+|+.+++.. +- .
T Consensus 12 P~~f~d--iiGq~~i~~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 12 PKFFKE--VIGQEIVVRIL-KNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred CCcHHH--ccChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 557888 88999988877 6666542 1234589999999999999999999986421 00 0
Q ss_pred Eccchhhh----------hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 287 VNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 287 v~~~~l~~----------~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
.+|..+.. ......-..++.+.+.+... |. .+...|++|||+|.+. ....+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~-P~---~~~~KVvIIDEad~Lt-------------~~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT-PI---KGKYKVYIIDEAHMLT-------------KEAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC-cc---cCCeeEEEEEChhhcC-------------HHHHHHH
Confidence 11111111 00011233456665555432 22 2235699999999874 2245667
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
+..++.. ...+++|.+|+.++.+.+++++ |+. .+.+++|+.++...+++..++.... ..++..+..++..+.
T Consensus 140 Lk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~ 211 (486)
T PRK14953 140 LKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASE 211 (486)
T ss_pred HHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7777743 3466777778888889999988 765 6899999999999999988765441 123445777888877
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.+++.++++.+..+
T Consensus 212 G-~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 212 G-GMRDAASLLDQASTY 227 (486)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 667777777766543
No 227
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6.2e-11 Score=135.09 Aligned_cols=174 Identities=18% Similarity=0.255 Sum_probs=118.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+..+||+||+|+|||++|+++|+...+. ++.+.+. + ....+.++++.
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idga------s-~~~vddIr~l~ 108 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGA------S-NTSVQDVRQIK 108 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCc------c-cCCHHHHHHHH
Confidence 345669999999999999999999876542 2222111 1 12345677766
Q ss_pred HHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+. .+...|++|||+|.+. ....++|+..++..++ .+++|.+|+.+..+.+ .+++| +..+
T Consensus 109 e~~~~~p~~~~~KVvIIDEa~~Ls----------~~a~naLLK~LEepp~---~~vfI~~tte~~kL~~-tI~SR-c~~~ 173 (563)
T PRK06647 109 EEIMFPPASSRYRVYIIDEVHMLS----------NSAFNALLKTIEEPPP---YIVFIFATTEVHKLPA-TIKSR-CQHF 173 (563)
T ss_pred HHHHhchhcCCCEEEEEEChhhcC----------HHHHHHHHHhhccCCC---CEEEEEecCChHHhHH-HHHHh-ceEE
Confidence 5543 3456799999999873 5567778887776432 4555556666666554 34566 4579
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
+|.+++.+++.+.+++. +...+++...++...++|++|.+++.++.+..... ..|+.+++.+++
T Consensus 174 ~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~-----------~~It~e~V~~ll 241 (563)
T PRK06647 174 NFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-----------SDITLEQIRSKM 241 (563)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-----------CCCCHHHHHHHh
Confidence 99999999888777753 44455666667777789999999999987654331 236766666544
No 228
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=4.1e-11 Score=133.69 Aligned_cols=228 Identities=14% Similarity=0.235 Sum_probs=137.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~~ 289 (745)
..+|++.-+|.-....-...+.+... | | ....+++||||+|+|||+|++++++.+. +..+.++++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~----~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN----P------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC----c------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 47899876666443222222332221 1 1 1235699999999999999999999763 345567888
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
.++...+........ ..++....... .+.+|+|||++.+..+. .....+-.+++. ....+..
T Consensus 180 ~~f~~~~~~~l~~~~-~~~~~~~~~~~------~~dvLiIDDiq~l~~k~--------~~~e~lf~l~N~---~~~~~k~ 241 (450)
T PRK14087 180 DEFARKAVDILQKTH-KEIEQFKNEIC------QNDVLIIDDVQFLSYKE--------KTNEIFFTIFNN---FIENDKQ 241 (450)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHhc------cCCEEEEeccccccCCH--------HHHHHHHHHHHH---HHHcCCc
Confidence 888776554332210 11222222111 14599999999885321 112222223322 2222333
Q ss_pred EEEEEeCC-CCC---CChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHH
Q 004550 370 LLIGMTNR-KDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 443 (745)
Q Consensus 370 ~vI~~tn~-~~~---id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 443 (745)
+|.+++. |+. +++.+.+ || ...+.+.+|+.++|.+|++.+++...... ..++..++.|+..+.| +.+.+
T Consensus 242 -iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~g-d~R~L 316 (450)
T PRK14087 242 -LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSD-DVRKI 316 (450)
T ss_pred -EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCC-CHHHH
Confidence 4444444 433 5788888 66 46788999999999999999887543111 2344557888888886 88889
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhh
Q 004550 444 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 487 (745)
Q Consensus 444 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~ 487 (745)
.+++......+.... ....++.+....++.++
T Consensus 317 ~gaL~~l~~~a~~~~------------~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 317 KGSVSRLNFWSQQNP------------EEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHhccc------------CCCCCCHHHHHHHHhhc
Confidence 998888775554321 01347777777777664
No 229
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.2e-11 Score=132.59 Aligned_cols=181 Identities=18% Similarity=0.226 Sum_probs=116.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCC-------CeEE------Eec---cccc-cccchhhHHHHHHHHHHHHhc---
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDF-------PFVK------IIS---AESM-IGLHESTKCAQIVKVFEDAYK--- 593 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~-------~~i~------v~~---~~~l-~g~~~~~~~~~i~~~f~~a~~--- 593 (745)
.+..+||+||+|+|||++|+.+|...++ |+-. +.. ++.+ +........+.++.+.+.+..
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~ 116 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI 116 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc
Confidence 4455789999999999999999987653 1110 000 1110 000011234456666666543
Q ss_pred -CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHH
Q 004550 594 -SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTD 672 (745)
Q Consensus 594 -~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~ 672 (745)
+.+.|++|||+|.+. ....++|+..++..++ ..++|++ |+.++.+.+ .+.+|+ ..+.|++++.+
T Consensus 117 ~~~~KVvIIDEad~Lt----------~~a~naLLk~LEepp~--~~v~Il~-tt~~~kl~~-tI~SRc-~~i~f~~ls~~ 181 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT----------KEAFNALLKTLEEPPP--RTIFILC-TTEYDKIPP-TILSRC-QRFIFSKPTKE 181 (486)
T ss_pred cCCeeEEEEEChhhcC----------HHHHHHHHHHHhcCCC--CeEEEEE-ECCHHHHHH-HHHHhc-eEEEcCCCCHH
Confidence 346799999999874 3456677777776533 3455555 455555544 344554 58999999998
Q ss_pred HHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 673 DAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 673 ~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
++...++. .+...+.+...++...++|++|.+++.++.+.... ...||.+++.+++.
T Consensus 182 el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-----------~~~It~~~V~~~lg 242 (486)
T PRK14953 182 QIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG-----------EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHhC
Confidence 88877775 34445566667777788999999999999886433 13477777776543
No 230
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.30 E-value=4.8e-11 Score=130.13 Aligned_cols=179 Identities=21% Similarity=0.244 Sum_probs=116.7
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc-cccchhh-HHHHHHHHHHHH----hcCCCeEEEEeccchhh
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-IGLHEST-KCAQIVKVFEDA----YKSPLSIIILDDIERLL 608 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l-~g~~~~~-~~~~i~~~f~~a----~~~~~~il~lDEid~l~ 608 (745)
..++||+||||||||++|+++|..++.||..+...... .| +.+. ....+.+++..+ .+..++||||||||++.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g-yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~ 194 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG-YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc-cccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence 46899999999999999999999999999888655421 12 2222 122344444322 23466899999999998
Q ss_pred hcCCC---CCcch-HHHHHHHHHHHhcCC----C-C-----CCcEEEEEecCCC--------------------------
Q 004550 609 EYVPI---GPRFS-NIISQTMLVLLKRLP----P-K-----GKKLLVIGTTSEV-------------------------- 648 (745)
Q Consensus 609 ~~~~~---g~~~~-~~~~~~Ll~~l~~~~----~-~-----~~~v~vI~ttn~~-------------------------- 648 (745)
..+.. +..++ ..+++.|+..|++.. + . ....++|.|+|-.
T Consensus 195 ~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~ 274 (413)
T TIGR00382 195 RKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFG 274 (413)
T ss_pred hhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccc
Confidence 64321 11122 358888888887542 1 1 1345777777751
Q ss_pred -C----------CCC------------ccccccccceEEEcCCCCHHHHHHHHHHc------------------cCCCHH
Q 004550 649 -S----------FLD------------SVGICDAFSVTYHVPTLKTDDAKKVLKQL------------------NVFAEE 687 (745)
Q Consensus 649 -~----------~l~------------~~~l~~rf~~~i~~p~~~~~~~~~Il~~~------------------~~~~~~ 687 (745)
+ .+. ...+.+|++.++.|.+++.+++.+|+... ..++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~ 354 (413)
T TIGR00382 275 AEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE 354 (413)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH
Confidence 0 000 01234899999999999999999998741 134555
Q ss_pred HHHHHHHHCC--CCcHHHHHHHHHHHHcc
Q 004550 688 DVDSASEALN--DMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 688 d~~~~~~~~~--~~~ir~ll~~l~~a~~~ 714 (745)
-+..++.... ..++|.|..+++.....
T Consensus 355 a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~ 383 (413)
T TIGR00382 355 ALKAIAKKALERKTGARGLRSIVEGLLLD 383 (413)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHhhHH
Confidence 5666666532 77788888887776544
No 231
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.4e-10 Score=127.33 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEec----cccc-cccchhhHHHHHHHHHHHHhc----CCCeEEEEec
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS----AESM-IGLHESTKCAQIVKVFEDAYK----SPLSIIILDD 603 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~----~~~l-~g~~~~~~~~~i~~~f~~a~~----~~~~il~lDE 603 (745)
..+.++|||||||+|||++|+++|+....+...... ...+ .........+.++++++.+.. ..+.||+|||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 456789999999999999999999876432111000 0000 000111223567788877643 3457999999
Q ss_pred cchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH---
Q 004550 604 IERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ--- 680 (745)
Q Consensus 604 id~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~--- 680 (745)
+|.+. ...++.|+..++..+. ..++|.+++.+..+.+ .+++|+ ..++|++++.+++..++..
T Consensus 117 ~~~l~----------~~~~~~ll~~le~~~~---~~~~Il~~~~~~kl~~-~l~sr~-~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 117 VHMLS----------SAAFNAFLKTLEEPPA---HAIFILATTEKHKIIP-TILSRC-QIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred hhhcC----------HHHHHHHHHHHhCCCC---ceEEEEEeCCcccCCH-HHHhcc-eeEecCCccHHHHHHHHHHHHH
Confidence 99874 3346677777765322 3344445555555555 334554 5799999999888877765
Q ss_pred -ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 681 -LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 681 -~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
.+...+++....+...+++++|.+++.++......
T Consensus 182 ~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~ 217 (367)
T PRK14970 182 KEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFC 217 (367)
T ss_pred HcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 34434455556666678899999999999876543
No 232
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.2e-10 Score=129.92 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=107.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC-------------------------CeEEEeccccccccchhhHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAESMIGLHESTKCAQIVKV 587 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~-------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~ 587 (745)
..+.++|||||||+|||++|+++|+...+ .++.+++.. ..+.+.++.+
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~-------~~gid~ir~i 109 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS-------HRGIEDIRQI 109 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc-------cCCHHHHHHH
Confidence 34567899999999999999999976533 223332211 0112344444
Q ss_pred HHHH----hcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceE
Q 004550 588 FEDA----YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVT 663 (745)
Q Consensus 588 f~~a----~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~ 663 (745)
-+.+ ..+...|+||||+|.+. ....+.|+..|+..++ .+++|.+|+.+..+.+ .+++| +..
T Consensus 110 ~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LLk~lEep~~---~~~~Il~t~~~~kl~~-tI~sR-c~~ 174 (451)
T PRK06305 110 NETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLLKTLEEPPQ---HVKFFLATTEIHKIPG-TILSR-CQK 174 (451)
T ss_pred HHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHHHHhhcCCC---CceEEEEeCChHhcch-HHHHh-ceE
Confidence 3332 23567899999999874 4456778888877432 4455556666665555 34455 458
Q ss_pred EEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 664 YHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
++|++++.+++...+.. .+...+.+....+...++|++|.+++.++....
T Consensus 175 v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 175 MHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG 228 (451)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999998887775 344455566666667789999999999997654
No 233
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=6.9e-11 Score=139.52 Aligned_cols=197 Identities=17% Similarity=0.122 Sum_probs=129.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc----EEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP----KIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~----~~v~~ 289 (745)
..+|++ |-|.+..++.| +.++... +.+..+||+||+|||||++|+.+|+.+.+..- -+-.|
T Consensus 11 P~~f~e--iiGqe~v~~~L-~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 11 PATFAE--VIGQEHVTEPL-STALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 567888 88999988887 6666532 12335899999999999999999999964210 00011
Q ss_pred chhhh------------hccc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHH
Q 004550 290 PEVLS------------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 354 (745)
Q Consensus 290 ~~l~~------------~~~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 354 (745)
..+.. ...+ ..-..+|++.+.+... +.. +...|+||||+|.|. ....+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~-p~~---~~~KV~IIDEad~lt-------------~~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFA-PAE---SRYKIFIIDEAHMVT-------------PQGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhc-hhc---CCceEEEEechhhcC-------------HHHHH
Confidence 11100 0011 1123455554443321 211 234599999999984 34567
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH
Q 004550 355 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 434 (745)
Q Consensus 355 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~ 434 (745)
.||..|+.. ...++||++|+.++.|.+.|++ |+. +++|..++.++..++|+..+++... -.++..+..+++.
T Consensus 139 aLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~ 210 (824)
T PRK07764 139 ALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 788888753 3578888888888889999998 754 7899999999988888877654331 1234456777777
Q ss_pred cCCCCHHHHHHHHHHHH
Q 004550 435 TKNYSGAELEGVAKSAV 451 (745)
Q Consensus 435 t~g~sg~dl~~l~~~A~ 451 (745)
+.| +.+++.++++..+
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 776 6666666666544
No 234
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.7e-10 Score=126.59 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=131.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC---------
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME--------- 283 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~--------- 283 (745)
.+-+|++ +.|.+..++.+ +..+... ..+.++|||||||+|||++|+++++.+.+..
T Consensus 12 rP~~~~~--iig~~~~~~~l-~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 12 RPQTFDD--VVGQSHITNTL-LNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred CCCcHHh--cCCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3678898 89999988877 6666543 2345799999999999999999999885421
Q ss_pred cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc
Q 004550 284 PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 363 (745)
Q Consensus 284 ~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 363 (745)
+..+.. +.........++++++.+... |. .+...|++|||+|.+.. ..++.|+..++.
T Consensus 77 ~~~~~l----~~~~~~~~~~i~~l~~~~~~~-p~---~~~~kiviIDE~~~l~~-------------~~~~~ll~~le~- 134 (367)
T PRK14970 77 FNIFEL----DAASNNSVDDIRNLIDQVRIP-PQ---TGKYKIYIIDEVHMLSS-------------AAFNAFLKTLEE- 134 (367)
T ss_pred cceEEe----ccccCCCHHHHHHHHHHHhhc-cc---cCCcEEEEEeChhhcCH-------------HHHHHHHHHHhC-
Confidence 111111 111112235677777766432 22 22356999999998742 235667776664
Q ss_pred cCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHH
Q 004550 364 ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 443 (745)
Q Consensus 364 ~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 443 (745)
.....++|.+|+.+..+.+++++ |+. .++++.|+.++...++...+.+... -.++..++.++..+.| +.+.+
T Consensus 135 -~~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~g-dlr~~ 206 (367)
T PRK14970 135 -PPAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADG-ALRDA 206 (367)
T ss_pred -CCCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCC-CHHHH
Confidence 23456777778888899999988 654 6899999999999888877654331 1344567888888765 66666
Q ss_pred HHHHHHHHHH
Q 004550 444 EGVAKSAVSF 453 (745)
Q Consensus 444 ~~l~~~A~~~ 453 (745)
.+.++....+
T Consensus 207 ~~~lekl~~y 216 (367)
T PRK14970 207 LSIFDRVVTF 216 (367)
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 235
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=1.4e-11 Score=129.22 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=98.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhh--ccchhHHH----------HHHHHHHHHhhccccCCC
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKN----------IRDLFADAENDQRTRGDQ 321 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~--~~g~~e~~----------i~~~f~~a~~~~~~~~~~ 321 (745)
..++|||.||||||||++|+++|+.+ +.++..+++...+.. ..|...-. ....+..|..
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l-~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-------- 133 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARL-NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-------- 133 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHH-CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--------
Confidence 35689999999999999999999999 577777877666554 44432111 1112333332
Q ss_pred CCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHh-----c----cCccCCCcEEEEEEeCCCC------------C
Q 004550 322 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK-----I----DGVESLNNVLLIGMTNRKD------------M 380 (745)
Q Consensus 322 ~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~-----~----d~~~~~~~v~vI~~tn~~~------------~ 380 (745)
.++++++||+|...++ ....++.+|+. + +.+..+.++.||+|+|..+ .
T Consensus 134 -~g~illlDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 134 -HNVALCFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred -CCeEEEechhhccCHH----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 2569999999987432 23344455542 1 1133556799999999865 2
Q ss_pred CChhhhCCCCccceEEecCCCHHHHHHHHHHHHcc
Q 004550 381 LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 415 (745)
Q Consensus 381 id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~ 415 (745)
+++|++. ||...+.++.|+.++-.+|+......
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 6899999 99988899999999999999876543
No 236
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.2e-10 Score=134.28 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=110.2
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEE---------E---------eccccc-cccchhhHHHHHHHHHHHHhc-
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK---------I---------ISAESM-IGLHESTKCAQIVKVFEDAYK- 593 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~---------v---------~~~~~l-~g~~~~~~~~~i~~~f~~a~~- 593 (745)
...++||+||+|+|||++|+++|+...+.... . ..++.+ +......+.+.++++.+.++.
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~ 116 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA 116 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC
Confidence 34679999999999999999999887552100 0 000100 111112345678888887753
Q ss_pred ---CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC
Q 004550 594 ---SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 670 (745)
Q Consensus 594 ---~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~ 670 (745)
+...|+||||+|.|. ....++|+..|+..+. .+++|.+|+.++.+-+ .+++| +..++|++++
T Consensus 117 p~~~~~KViIIDEad~Lt----------~~a~naLLK~LEePp~---~tvfIL~t~~~~~llp-TIrSR-c~~~~f~~l~ 181 (620)
T PRK14948 117 PVQARWKVYVIDECHMLS----------TAAFNALLKTLEEPPP---RVVFVLATTDPQRVLP-TIISR-CQRFDFRRIP 181 (620)
T ss_pred hhcCCceEEEEECccccC----------HHHHHHHHHHHhcCCc---CeEEEEEeCChhhhhH-HHHhh-eeEEEecCCC
Confidence 345799999999973 4567788888876432 4555656666665554 34455 5789999999
Q ss_pred HHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 671 TDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 671 ~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
.+++...+.. .+...+.+....+...++|++|++++.++....
T Consensus 182 ~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL 228 (620)
T PRK14948 182 LEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSL 228 (620)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 8887766654 333344455666777789999999999987543
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.29 E-value=1.1e-10 Score=129.59 Aligned_cols=200 Identities=13% Similarity=0.206 Sum_probs=141.1
Q ss_pred CceeeeeccCCCCChhHHHHHHHh----------hCCCCeEEEeccccc-------------cccch--hhHHHHHHHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGI----------DSDFPFVKIISAESM-------------IGLHE--STKCAQIVKVF 588 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~----------~~~~~~i~v~~~~~l-------------~g~~~--~~~~~~i~~~f 588 (745)
....+++.|-||||||.++..+-. .-.+.|+.+++..+- .|... ....+.+..-|
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f 500 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRF 500 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhh
Confidence 344789999999999998888765 236788888776531 11111 11234455555
Q ss_pred HH-HhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccc---cccccc-eE
Q 004550 589 ED-AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVG---ICDAFS-VT 663 (745)
Q Consensus 589 ~~-a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~---l~~rf~-~~ 663 (745)
.- ..+..++||+|||.|.|. +.-+..|..++++...++.+++|||..|.++...... ..+|.. ..
T Consensus 501 ~~~k~~~~~~VvLiDElD~Lv----------tr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 501 TVPKPKRSTTVVLIDELDILV----------TRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred ccCCCCCCCEEEEeccHHHHh----------cccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 52 124567999999999997 3346677888888877788999999999988765532 235665 67
Q ss_pred EEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCC--CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHH
Q 004550 664 YHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN--DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYD 737 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~--~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~ 737 (745)
+.|.||+..|+++|+... ..|...-++-+..+.+ .||.|++++++++|.+.+.....-........|+..|+.+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~ 650 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME 650 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHH
Confidence 999999999999999863 2344444444444444 9999999999999999886532111122345689999999
Q ss_pred HHHHHh
Q 004550 738 CLQDMV 743 (745)
Q Consensus 738 al~~~~ 743 (745)
|++++.
T Consensus 651 Ai~em~ 656 (767)
T KOG1514|consen 651 AINEML 656 (767)
T ss_pred HHHHHh
Confidence 999764
No 238
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.28 E-value=3.2e-11 Score=124.12 Aligned_cols=219 Identities=19% Similarity=0.267 Sum_probs=145.2
Q ss_pred cccccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---------CCCeEEEec
Q 004550 498 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIIS 568 (745)
Q Consensus 498 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---------~~~~i~v~~ 568 (745)
+.......|++|.. ..++++.+ .+.+...+..+..++|++|++|.|||++++.++... ..|.+.+..
T Consensus 28 I~~i~~~rWIgY~~-A~~~L~~L---~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~ 103 (302)
T PF05621_consen 28 IAYIRADRWIGYPR-AKEALDRL---EELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM 103 (302)
T ss_pred HHHHhcCCeecCHH-HHHHHHHH---HHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence 34445567888865 33344443 334445666778899999999999999999998643 356777766
Q ss_pred cccc------------ccc------chhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHh
Q 004550 569 AESM------------IGL------HESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLK 630 (745)
Q Consensus 569 ~~~l------------~g~------~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~ 630 (745)
|..- +|. ........+..++ +...+.+|+|||++.++. | +..-+..++..|+
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll---r~~~vrmLIIDE~H~lLa----G---s~~~qr~~Ln~LK 173 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL---RRLGVRMLIIDEFHNLLA----G---SYRKQREFLNALK 173 (302)
T ss_pred CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH---HHcCCcEEEeechHHHhc----c---cHHHHHHHHHHHH
Confidence 5431 121 1112223333444 345668999999999762 2 2233445555555
Q ss_pred cCCCCC-CcEEEEEecCCCCCCC-ccccccccceEEEcCCCC-HHHHHHHHHHc---------cCCCHHHHHHHHHHCCC
Q 004550 631 RLPPKG-KKLLVIGTTSEVSFLD-SVGICDAFSVTYHVPTLK-TDDAKKVLKQL---------NVFAEEDVDSASEALND 698 (745)
Q Consensus 631 ~~~~~~-~~v~vI~ttn~~~~l~-~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~---------~~~~~~d~~~~~~~~~~ 698 (745)
.+.+.. -.++.+||......+. ...+.+||. .+.+|.+. .++...++..+ ....+.++...+...++
T Consensus 174 ~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 174 FLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred HHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 553332 3556666654444332 237779998 67778888 66777777753 14556788888888999
Q ss_pred CcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHH
Q 004550 699 MPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 738 (745)
Q Consensus 699 ~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~a 738 (745)
|.+.++..++..|+..| +.+|.+.||.+++.++
T Consensus 253 G~iG~l~~ll~~aA~~A-------I~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 253 GLIGELSRLLNAAAIAA-------IRSGEERITREILDKI 285 (302)
T ss_pred CchHHHHHHHHHHHHHH-------HhcCCceecHHHHhhC
Confidence 99999999999999877 5579999999988753
No 239
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=5.6e-11 Score=121.58 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=116.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhh---CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 612 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~---~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~ 612 (745)
..++|+||+|||||+++.+++.. .+...+.+...+ ....+.+.++... ...+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~---------~~~~~~~~~~~l~--~~dlLiIDDi~~l~~~-- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA---------AAGRLRDALEALE--GRSLVALDGLESIAGQ-- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH---------hhhhHHHHHHHHh--cCCEEEEeCcccccCC--
Confidence 45999999999999999999754 344434432211 1122344554443 3469999999987522
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--ccccccc--ceEEEcCCCCHHHHHHHHHHc----cCC
Q 004550 613 IGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAF--SVTYHVPTLKTDDAKKVLKQL----NVF 684 (745)
Q Consensus 613 ~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf--~~~i~~p~~~~~~~~~Il~~~----~~~ 684 (745)
......++.+++.....+ .-+|+.+...|..+.. ..+++|| ...+.+++|+.+++.+|+++. +..
T Consensus 109 ------~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 109 ------REDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ------hHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 122344555555442222 2244434445555532 2666887 678999999999999999973 355
Q ss_pred CHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 685 AEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 685 ~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.+++....+....++++|.++++++.....+.. .+ ..||.+.+.++++
T Consensus 182 l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~-------~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGLVALLDRLDRESLA-------AK-RRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-------hC-CCCCHHHHHHHHh
Confidence 677777777777889999999998876532211 12 4699999988875
No 240
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-11 Score=132.43 Aligned_cols=168 Identities=21% Similarity=0.299 Sum_probs=118.0
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhHHHHHH---HHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIV---KVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~~~~i~---~~f~~a~~~~~~il~ 600 (745)
..+||++|++||||..+|+++...+ +.|||.++|... ++|+..|....+.. ..|+.|.. ..||
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLf 240 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLF 240 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceEE
Confidence 4679999999999999999999766 579999998764 34543332211121 25555544 6799
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCCCCCcccccccc--------c-eE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSFLDSVGICDAF--------S-VT 663 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~~l~~~~l~~rf--------~-~~ 663 (745)
||||..+. -.++.-|+..|..-. +-.-+|-||++||+. |....-.++| + ..
T Consensus 241 LDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L~~~v~~G~FReDLyyRLnV~~ 308 (464)
T COG2204 241 LDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--LEEEVAAGRFREDLYYRLNVVP 308 (464)
T ss_pred eeccccCC----------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--HHHHHHcCCcHHHHHhhhccce
Confidence 99998863 445556666655321 112368899999875 3322222344 3 45
Q ss_pred EEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 664 YHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 664 i~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
|++||+. .+|+.-++++. ..++++.+..+...-++|++|+|.|+++++......
T Consensus 309 i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 309 LRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred ecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 8899998 78888877762 257777788888888899999999999999988754
No 241
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.4e-10 Score=132.92 Aligned_cols=185 Identities=14% Similarity=0.185 Sum_probs=117.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeE-----------E----E---------ecccc--ccccchhhHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFV-----------K----I---------ISAES--MIGLHESTKCAQIVK 586 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i-----------~----v---------~~~~~--l~g~~~~~~~~~i~~ 586 (745)
+-+.++||+||+|||||++|+.+|+...+.-. . . ..++. +-|. ...+.+.|++
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~-s~~~vd~Ir~ 114 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAA-SNNSVDDIRQ 114 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEeccc-ccCCHHHHHH
Confidence 44566999999999999999999987765210 0 0 00000 0110 1112456777
Q ss_pred HHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccce
Q 004550 587 VFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSV 662 (745)
Q Consensus 587 ~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~ 662 (745)
+.+.+. .+...|++|||+|.+. ....++|+..|+..++ ..++|+ +|+.+..+-+ .++ ..+.
T Consensus 115 l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naLLK~LEePp~--~tv~IL-~t~~~~kLl~-TI~-SRc~ 179 (620)
T PRK14954 115 LRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAFLKTLEEPPP--HAIFIF-ATTELHKIPA-TIA-SRCQ 179 (620)
T ss_pred HHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHHHHHHhCCCC--CeEEEE-EeCChhhhhH-HHH-hhce
Confidence 666653 3456799999999874 4456788888887543 244444 4455544443 232 4467
Q ss_pred EEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHH
Q 004550 663 TYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 738 (745)
Q Consensus 663 ~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~a 738 (745)
.++|.+++.+++...++. .+...+++...++...++|++|.+++.++.......+. .+...|+.+++.+.
T Consensus 180 ~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~------~~~~~It~~~V~~l 253 (620)
T PRK14954 180 RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGS------EAEKVIAYQGVAEL 253 (620)
T ss_pred EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccc------ccCCccCHHHHHHH
Confidence 999999998888776664 34434555666666778999999999998765543110 12345888777665
Q ss_pred H
Q 004550 739 L 739 (745)
Q Consensus 739 l 739 (745)
+
T Consensus 254 v 254 (620)
T PRK14954 254 L 254 (620)
T ss_pred H
Confidence 4
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=6.3e-11 Score=131.65 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=116.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHH--------hcCCCeEEEEeccc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDA--------YKSPLSIIILDDIE 605 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a--------~~~~~~il~lDEid 605 (745)
+.+-+||+||||.|||++|+.+|+.+|+..+.++.++...+. .+++....| ..+.|.+|++||||
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~-------~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP-------MVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH-------HHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 336679999999999999999999999999999988864332 233333222 13678999999999
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHhcC-----CCCCC-------------cEEEEEecCCCCCCCccccc--cccceEEE
Q 004550 606 RLLEYVPIGPRFSNIISQTMLVLLKRL-----PPKGK-------------KLLVIGTTSEVSFLDSVGIC--DAFSVTYH 665 (745)
Q Consensus 606 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~-----~~~~~-------------~v~vI~ttn~~~~l~~~~l~--~rf~~~i~ 665 (745)
.-. .....+++.+++.- ..... .--|||.+|... -| .|+ .-|..+++
T Consensus 398 Ga~----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aP-aLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 398 GAP----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--AP-ALRPLRPFAEIIA 464 (877)
T ss_pred CCc----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--ch-hhhhcccceEEEE
Confidence 732 34555555555521 01110 114677777653 33 222 45888999
Q ss_pred cCCCC----HHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 666 VPTLK----TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 666 ~p~~~----~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
|++|+ .+.+..|+.+.+...+.-....+..++..|||..++.++..+...+.
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence 99888 56777788887877787777777788899999999999998877654
No 243
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=132.99 Aligned_cols=199 Identities=20% Similarity=0.242 Sum_probs=134.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC------cEE-
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------PKI- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~------~~~- 286 (745)
+-+|++ |-|.+..++.+ +.++... ..+..+|||||||+|||++|+++|+.+.+.. +-.
T Consensus 12 P~~f~d--iiGqe~iv~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 12 PRDFNS--LEGQDFVVETL-KHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 567888 89999999888 6666542 2234699999999999999999999986421 000
Q ss_pred Eccchhhh-------hccch---hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 287 VNGPEVLS-------KFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 287 v~~~~l~~-------~~~g~---~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
-+|..+.. .+-|. .-..++++.+.+... |. .+...|++|||+|.+. ....+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~-p~---~~~~KVvIIDEa~~Ls-------------~~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP-PA---SSRYRVYIIDEVHMLS-------------NSAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc-hh---cCCCEEEEEEChhhcC-------------HHHHHHH
Confidence 01111100 01111 234556655544432 21 1234599999999883 3356778
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..++. ....+++|++|+.+..+.+++++ |+. .++|..++.++..++++..++.... ..++..+..+++.+.
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~ 211 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKST 211 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 888874 44578888888888899999998 766 6899999999999888877654331 234456778888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSF 453 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~ 453 (745)
| +.+++.++++.+..+
T Consensus 212 G-dlR~alslLdklis~ 227 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSF 227 (563)
T ss_pred C-CHHHHHHHHHHHHhh
Confidence 6 677777777765543
No 244
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=3.5e-10 Score=112.96 Aligned_cols=166 Identities=16% Similarity=0.292 Sum_probs=114.7
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE--Ecc
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--VNG 289 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~--v~~ 289 (745)
...+.+++ +-|++.|++.+++..- .-+.-.+..++||||++|||||++++++..++....+.. +..
T Consensus 21 ~~~~~l~~--L~Gie~Qk~~l~~Nt~----------~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 21 PDPIRLDD--LIGIERQKEALIENTE----------QFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred CCCCCHHH--hcCHHHHHHHHHHHHH----------HHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 35788888 9999999999854332 112235678999999999999999999999886544444 333
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc--cCCC
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--ESLN 367 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--~~~~ 367 (745)
.++ ..+..+++..+... . .-|||+|++. + +..+.-...|-..+||- ....
T Consensus 89 ~~L---------~~l~~l~~~l~~~~-~------kFIlf~DDLs--F----------e~~d~~yk~LKs~LeGgle~~P~ 140 (249)
T PF05673_consen 89 EDL---------GDLPELLDLLRDRP-Y------KFILFCDDLS--F----------EEGDTEYKALKSVLEGGLEARPD 140 (249)
T ss_pred HHh---------ccHHHHHHHHhcCC-C------CEEEEecCCC--C----------CCCcHHHHHHHHHhcCccccCCC
Confidence 222 23455555554321 1 3499999865 2 12233345566667763 3345
Q ss_pred cEEEEEEeCCCCCCChhhhC---------------------CCCccceEEecCCCHHHHHHHHHHHHcccc
Q 004550 368 NVLLIGMTNRKDMLDEALLR---------------------PGRLEVQVEISLPDENGRLQILQIHTNKMK 417 (745)
Q Consensus 368 ~v~vI~~tn~~~~id~al~r---------------------~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~ 417 (745)
|+++.+|+|+...+.+.+.. ..||...|.|.+|+.++-.+|++.++++..
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 89999999997665332211 239999999999999999999999987654
No 245
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.4e-10 Score=128.20 Aligned_cols=200 Identities=17% Similarity=0.175 Sum_probs=128.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
+-+|++ |-|.+..++.+ +.++... +.+..+||+||||+|||++|+++|+.+.+....
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 12 PKKFAD--ITAQEHITRTI-QNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 567888 88999888777 6666532 234469999999999999999999998653210
Q ss_pred ----EEccch---hh-------hhccc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcc
Q 004550 286 ----IVNGPE---VL-------SKFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 348 (745)
Q Consensus 286 ----~v~~~~---l~-------~~~~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~ 348 (745)
.-.|.. +. ..+.| .....++++.+.+.. .|.. +...|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~-~p~~---~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRY-GPQK---GRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhh-chhc---CCeEEEEEeChhhCCH-----------
Confidence 000000 00 01111 113456665555532 2222 2235999999998842
Q ss_pred hhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccH
Q 004550 349 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 428 (745)
Q Consensus 349 ~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l 428 (745)
...+.|+..++. .....++|.+|+.+..+.+.+++ |.. .++++.++.++..+.++..++... .-.++..+
T Consensus 142 --~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al 211 (397)
T PRK14955 142 --AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG---ISVDADAL 211 (397)
T ss_pred --HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 234567777663 33466777777777888888887 665 789999999988888887665432 12344557
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 429 QELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 429 ~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
+.++..+.| +.+.+.+.++.+..++
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 888888876 6666666666655443
No 246
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.5e-10 Score=133.89 Aligned_cols=232 Identities=21% Similarity=0.268 Sum_probs=135.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---------CCCc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 284 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---------~~~~ 284 (745)
.-+|++ +.|.+..++.+. +.+.. ..+.+++|+||||||||++|+++++... ..++
T Consensus 150 p~~~~~--iiGqs~~~~~l~-~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 150 PRAFSE--IVGQERAIKALL-AKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred cCcHHh--ceeCcHHHHHHH-HHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 467888 889999888873 33322 2245799999999999999999987662 2356
Q ss_pred EEEccchhh-------hhccchhHHH----HHHHHHHHHhhccccC--CCCCeEEEEEccchhhhhcCCCCCCCCcchhH
Q 004550 285 KIVNGPEVL-------SKFVGETEKN----IRDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 351 (745)
Q Consensus 285 ~~v~~~~l~-------~~~~g~~e~~----i~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 351 (745)
+.++|..+- ..+.|..... .+..+.......+..+ ......+|||||++.|.+.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~------------- 280 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL------------- 280 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-------------
Confidence 778876541 1112211110 0111110000000000 0011239999999987422
Q ss_pred HHHHHHHhccCc--------------------------cCCCcEEEEEEe-CCCCCCChhhhCCCCccceEEecCCCHHH
Q 004550 352 IVNQLLTKIDGV--------------------------ESLNNVLLIGMT-NRKDMLDEALLRPGRLEVQVEISLPDENG 404 (745)
Q Consensus 352 ~~~~LL~~~d~~--------------------------~~~~~v~vI~~t-n~~~~id~al~r~gRf~~~i~i~~Pd~~~ 404 (745)
....|+..++.- ....++++|++| +.++.+++++++ ||. .+.+++++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 222333333210 112346777665 557889999998 887 67899999999
Q ss_pred HHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHH
Q 004550 405 RLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 484 (745)
Q Consensus 405 r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al 484 (745)
+.+|++..+++.... + ++..++.++..+. .++...+++..+...+..+.... ........|+.+|+.+++
T Consensus 358 i~~Il~~~a~~~~v~--l-s~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~-----~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 358 IALIVLNAAEKINVH--L-AAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA-----GKENDKVTITQDDVYEVI 427 (615)
T ss_pred HHHHHHHHHHHcCCC--C-CHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeeECHHHHHHHh
Confidence 999999988754311 2 3334566666553 55555566666655554433200 001234679999999888
Q ss_pred Hhh
Q 004550 485 YEI 487 (745)
Q Consensus 485 ~~~ 487 (745)
..-
T Consensus 428 ~~~ 430 (615)
T TIGR02903 428 QIS 430 (615)
T ss_pred CCC
Confidence 743
No 247
>PRK04132 replication factor C small subunit; Provisional
Probab=99.26 E-value=1e-10 Score=137.15 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=119.7
Q ss_pred Cceeeeecc--CCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhhHHHHHHHHHHHHhcC------CCeEEE
Q 004550 534 PLVTCLLEG--PSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKS------PLSIII 600 (745)
Q Consensus 534 ~~~~~Ll~G--ppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~------~~~il~ 600 (745)
|.-+-+..| |++.|||++|+++|++. +.+++.+++++. . +.+.++++.+.+... +..|+|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~-r------gid~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE-R------GINVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc-c------cHHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 444557779 99999999999999986 567999988763 1 233567666554321 347999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ 680 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~ 680 (745)
|||+|+|. ...+++|+..|+..+ ..+.+|.+||.+..+-+ .+++| |..+.|++++.+++...|+.
T Consensus 636 IDEaD~Lt----------~~AQnALLk~lEep~---~~~~FILi~N~~~kIi~-tIrSR-C~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 636 LDEADALT----------QDAQQALRRTMEMFS---SNVRFILSCNYSSKIIE-PIQSR-CAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred EECcccCC----------HHHHHHHHHHhhCCC---CCeEEEEEeCChhhCch-HHhhh-ceEEeCCCCCHHHHHHHHHH
Confidence 99999973 567888998888643 35677778888887765 45556 78999999998888877764
Q ss_pred ----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 681 ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 681 ----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
.+...+++....+...+.|++|.++++++.+...
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~ 738 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL 738 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3444456667777788999999999999987754
No 248
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=8e-11 Score=132.83 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
..++|||++|||||+|++++|++. +..++.+...+ ++........+...+.|.+.++. +.+|+||||+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee-f~~el~~al~~~~~~~f~~~y~~-~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE-FTNEFINSIRDGKGDSFRRRYRE-MDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHhccHHHHHHHhhc-CCEEEEehhccccCC
Confidence 448999999999999999999864 45666665544 32211111111112234444443 489999999998621
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc----
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE-VSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL---- 681 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~-~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~---- 681 (745)
......|+.+++.+...++. +|| |++. +..+.. ..|++||. ..+.+++|+.+.+.+||++.
T Consensus 393 --------e~tqeeLF~l~N~l~e~gk~-III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHNANKQ-IVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------HHHHHHHHHHHHHHHhcCCC-EEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 22334455555554333333 445 4444 444332 26778995 77899999999999999973
Q ss_pred cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 682 NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 682 ~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
+...++|+.+.+......++|.|..++.....
T Consensus 463 ~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a 494 (617)
T PRK14086 463 QLNAPPEVLEFIASRISRNIRELEGALIRVTA 494 (617)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 45567788888877778899999888776543
No 249
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=2e-10 Score=128.22 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=128.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
+.+|++ |.|.+..++.+ +.++... +.+..+|||||||+|||++|+++|+.+.+....
T Consensus 13 P~~~~d--iiGq~~~v~~L-~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 13 PQTFSE--ILGQDAVVAVL-KNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 478998 88999988877 6666432 234569999999999999999999998542100
Q ss_pred EEccchhh-------hhccch---hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHH
Q 004550 286 IVNGPEVL-------SKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 355 (745)
Q Consensus 286 ~v~~~~l~-------~~~~g~---~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 355 (745)
..+|..+. -.+.|. .-..++++.+..... +. .+...|++|||+|.+. ....+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~-~~---~~~~kvvIIdead~lt-------------~~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFT-PS---KSRYKIYIIDEVHMLT-------------KEAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhh-hh---cCCCEEEEEecHHhhC-------------HHHHHH
Confidence 00111110 011111 123444444333221 11 1234699999999884 224567
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHc
Q 004550 356 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 435 (745)
Q Consensus 356 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t 435 (745)
|+..|+.. ...+++|++|+.+..+.+.+++ |+. .++++.++.++....++..+++... -.++..++.++..+
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s 212 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAA 212 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 88888753 3477888888888999999998 765 7899999999988888876654321 13445577888888
Q ss_pred CCCCHHHHHHHHHHHH
Q 004550 436 KNYSGAELEGVAKSAV 451 (745)
Q Consensus 436 ~g~sg~dl~~l~~~A~ 451 (745)
.| +.+.+.++++...
T Consensus 213 ~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 213 QG-SLRDAESLYDYVV 227 (451)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 75 5556655555543
No 250
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=1e-10 Score=119.62 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=121.1
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcC
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV 611 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~ 611 (745)
...++|+||+|+|||+++++++++. +...+.+...+ +... ...+.+.... ..+|+|||++.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~-~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE-LLDR--------GPELLDNLEQ--YELVCLDDLDVIAGK- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH-HHhh--------hHHHHHhhhh--CCEEEEechhhhcCC-
Confidence 4678999999999999999998643 45555554433 3211 1122222222 258999999987521
Q ss_pred CCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH----ccC
Q 004550 612 PIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ----LNV 683 (745)
Q Consensus 612 ~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~----~~~ 683 (745)
....+.|..+++.....+ +.+|++++..|..+.. ..+++||. ..+.+.+|+.+++..+++. .+.
T Consensus 113 -------~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 113 -------ADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------hHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 223455666666654433 4577777766665543 37779984 7788999999999999993 345
Q ss_pred CCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 684 FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 684 ~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
..++|+...+.....+++|.++.+++.....+-. ....||..-+.++|+
T Consensus 185 ~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~--------~~~~it~~~~~~~L~ 233 (234)
T PRK05642 185 HLTDEVGHFILTRGTRSMSALFDLLERLDQASLQ--------AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------cCCcCCHHHHHHHhc
Confidence 5678888888888999999999998887543211 124589888888764
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=4.5e-11 Score=143.87 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=116.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhcC-CCeEEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKS-PLSIII 600 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~~-~~~il~ 600 (745)
....+++|+||||||||++++.+|... +.+++.+.....+.| .+.++.+..++++|+.+.+. .+.|||
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILf 271 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILF 271 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 344678999999999999999999763 566676655444434 45566777899999988653 589999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
||||+.|.+.+...+ +....+.|...+ ....+.+||+|+..+. .|+ .+.+||. .+.++.|+.+++.
T Consensus 272 IDEih~l~~~g~~~~--~~d~~~~Lk~~l-----~~g~i~~IgaTt~~e~r~~~~~d~-al~rRf~-~i~v~~p~~~~~~ 342 (852)
T TIGR03346 272 IDELHTLVGAGKAEG--AMDAGNMLKPAL-----ARGELHCIGATTLDEYRKYIEKDA-ALERRFQ-PVFVDEPTVEDTI 342 (852)
T ss_pred eccHHHhhcCCCCcc--hhHHHHHhchhh-----hcCceEEEEeCcHHHHHHHhhcCH-HHHhcCC-EEEeCCCCHHHHH
Confidence 999999985432211 112333333332 2347899999998753 455 5667996 5889999999999
Q ss_pred HHHHHc--------c-CCCHHHHHHHHHHCC-----CCcHHHHHHHHHHHHcc
Q 004550 676 KVLKQL--------N-VFAEEDVDSASEALN-----DMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 676 ~Il~~~--------~-~~~~~d~~~~~~~~~-----~~~ir~ll~~l~~a~~~ 714 (745)
.|++.. + ...+..+..++.-.. ..-..+++++++.|...
T Consensus 343 ~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 343 SILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 999863 1 234555555443222 22245677777776543
No 252
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.9e-10 Score=131.14 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=110.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC-------------------------CeEEEeccccccccchhhHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAESMIGLHESTKCAQIVKV 587 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~-------------------------~~i~v~~~~~l~g~~~~~~~~~i~~~ 587 (745)
..+..+|||||+|+|||++|+++|+...+ +++.+++. .......++.+
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~-------~~~~vd~Ir~l 109 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA-------SNNSVDDIRNL 109 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc-------ccCCHHHHHHH
Confidence 34556899999999999999999986542 22222211 11224567888
Q ss_pred HHHHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceE
Q 004550 588 FEDAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVT 663 (745)
Q Consensus 588 f~~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~ 663 (745)
.+.+... ...|++|||+|.+. ....++|+..|+..+. ..++|+ +|+.+..+-+ .+++| +..
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~Ls----------~~a~naLLK~LEepp~--~tifIL-~tt~~~kIl~-tI~SR-c~i 174 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHMLS----------QAAFNAFLKTLEEPPS--YAIFIL-ATTEKHKILP-TILSR-CQI 174 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcccCC----------HHHHHHHHHHHhCCCC--CeEEEE-EeCCchhchH-HHHhh-hhe
Confidence 7776433 35699999999873 4567788888887543 334444 5555555554 34455 678
Q ss_pred EEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 664 YHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
++|++++.+++...++. .+...+.+...++...+++++|++++.++.....+
T Consensus 175 v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~ 230 (614)
T PRK14971 175 FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFT 230 (614)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999888777764 44445566666777778999999999998865443
No 253
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.25 E-value=4.6e-11 Score=143.21 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=102.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC----------CCCeEEEeccccccc-cchhhHHHHHHHHHHHHhc-CCCeEEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYK-SPLSIII 600 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~----------~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~-~~~~il~ 600 (745)
....+++|+||||||||++|+.+|... +.+++.+.....+.| .+.++.++.++++|+.+.+ ..++|||
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILf 276 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 276 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEE
Confidence 344678999999999999999999875 667777766655544 3556677789999988644 4678999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCC-----CCccccccccceEEEcCCCCHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSF-----LDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~-----l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
||||+.|.+.+..++ +....+.|...+ ....+.+||||+..+. .|+ .+.+||. .|.++.|+.++..
T Consensus 277 IDEih~l~~~~~~~~--~~d~~~~lkp~l-----~~g~l~~IgaTt~~e~r~~~~~d~-al~rRf~-~i~v~eP~~~~~~ 347 (857)
T PRK10865 277 IDELHTMVGAGKADG--AMDAGNMLKPAL-----ARGELHCVGATTLDEYRQYIEKDA-ALERRFQ-KVFVAEPSVEDTI 347 (857)
T ss_pred EecHHHhccCCCCcc--chhHHHHhcchh-----hcCCCeEEEcCCCHHHHHHhhhcH-HHHhhCC-EEEeCCCCHHHHH
Confidence 999999986543221 112233333333 2347899999998774 565 5567997 5789999999999
Q ss_pred HHHHHc
Q 004550 676 KVLKQL 681 (745)
Q Consensus 676 ~Il~~~ 681 (745)
.|++..
T Consensus 348 ~iL~~l 353 (857)
T PRK10865 348 AILRGL 353 (857)
T ss_pred HHHHHH
Confidence 999863
No 254
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2.3e-10 Score=128.42 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=133.6
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE------E-
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~------~- 286 (745)
+-+|++ |.|.+...+.+ +.++... ..+..+|||||||+|||++|+++|+.+.+.... .
T Consensus 10 P~~fde--iiGqe~v~~~L-~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 10 PKHFDE--LIGQESVSKTL-SLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 467888 99999988887 6665432 233457999999999999999999998432100 0
Q ss_pred Eccc--------hhhhhccch---hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHH
Q 004550 287 VNGP--------EVLSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 355 (745)
Q Consensus 287 v~~~--------~l~~~~~g~---~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 355 (745)
-+|. +++. .-+. .-..++++.+.... .|..+ ...|++|||+|.+. ....+.
T Consensus 75 ~~C~~~~~~~h~dv~e-ldaas~~gId~IRelie~~~~-~P~~~---~~KVvIIDEad~Lt-------------~~A~NA 136 (535)
T PRK08451 75 IQCQSALENRHIDIIE-MDAASNRGIDDIRELIEQTKY-KPSMA---RFKIFIIDEVHMLT-------------KEAFNA 136 (535)
T ss_pred HHHHHHhhcCCCeEEE-eccccccCHHHHHHHHHHHhh-CcccC---CeEEEEEECcccCC-------------HHHHHH
Confidence 0000 0000 0011 13456666654332 22212 24599999999883 345667
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHc
Q 004550 356 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 435 (745)
Q Consensus 356 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t 435 (745)
||..|+.. ...+.+|.+|+.+..+.+++++ |. ..++|.+++.++....++..+++... ..++..+..++..+
T Consensus 137 LLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s 208 (535)
T PRK08451 137 LLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSG 208 (535)
T ss_pred HHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 88888754 3467788888888999999998 75 48899999999888888876654331 23445678888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004550 436 KNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 436 ~g~sg~dl~~l~~~A~~~a 454 (745)
.| +.+++.++++.+..++
T Consensus 209 ~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc
Confidence 76 8888888888777654
No 255
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.1e-10 Score=129.17 Aligned_cols=200 Identities=17% Similarity=0.202 Sum_probs=130.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-------- 285 (745)
+-+|++ |-|.+..++.+ ++++... +-+..+||+||||||||++|+.+|+.+.+....
T Consensus 12 P~~f~e--ivGQe~i~~~L-~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 12 PSKFAD--ITAQEHITHTI-QNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 567888 88999988877 7766542 223469999999999999999999999652210
Q ss_pred ----EEccchhh----------hhccch---hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcc
Q 004550 286 ----IVNGPEVL----------SKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 348 (745)
Q Consensus 286 ----~v~~~~l~----------~~~~g~---~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~ 348 (745)
.-.|..+. ..+.|. ....++++.+.+.. .|..+ ...|++|||+|.+.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~~~---~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQKG---RYRVYIIDEVHMLS------------ 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhhcC---CCEEEEEeChhhcC------------
Confidence 00111000 011121 13456666555532 12222 23599999999884
Q ss_pred hhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccH
Q 004550 349 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 428 (745)
Q Consensus 349 ~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l 428 (745)
....+.||..|+.. ....++|.+|+.+..+.+.+++ |.. .++|..++.++....++..+++... -.++..+
T Consensus 141 -~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal 211 (620)
T PRK14954 141 -TAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGI---QIDADAL 211 (620)
T ss_pred -HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHH
Confidence 22356788887743 2456777777778889999988 653 7999999999888888766654321 1345567
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 429 QELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 429 ~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
+.++..+.| +.+++.+.++....++
T Consensus 212 ~~La~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 212 QLIARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 888888876 5566666666554443
No 256
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-10 Score=118.14 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=101.0
Q ss_pred CeEEEEeccchhhhcCCCCC-cchH-HHHHHHHHHHhcCC-------CCCCcEEEEEec----CCCCCCCccccccccce
Q 004550 596 LSIIILDDIERLLEYVPIGP-RFSN-IISQTMLVLLKRLP-------PKGKKLLVIGTT----SEVSFLDSVGICDAFSV 662 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~-~~~~-~~~~~Ll~~l~~~~-------~~~~~v~vI~tt----n~~~~l~~~~l~~rf~~ 662 (745)
..|+||||||+++...+.|+ ..|. -++.-||-++++.. .....+++||+- +.|..|-| .|.+||.-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiP-ELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIP-ELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcCh-hhcCCCce
Confidence 46999999999998776554 5554 46777888887742 234468888665 34555556 67799999
Q ss_pred EEEcCCCCHHHHHHHHHHc------------------cCCCHHHHHHHHHHC-------CCCcHHHHHHHHHHHHccccC
Q 004550 663 TYHVPTLKTDDAKKVLKQL------------------NVFAEEDVDSASEAL-------NDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 663 ~i~~p~~~~~~~~~Il~~~------------------~~~~~~d~~~~~~~~-------~~~~ir~ll~~l~~a~~~~~~ 717 (745)
.+++..++.+++..||... ..|+++.+.+++... .++++|+|-.++|..-..-.-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 9999999999999999851 257777666655332 289999999999887553210
Q ss_pred CchhhcccCCCCccHhHHHHHHHHHh
Q 004550 718 GAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 718 ~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.+++.....-.|+.+-+.+-+.++.
T Consensus 410 -eA~d~~g~~v~Id~~yV~~~l~~l~ 434 (444)
T COG1220 410 -EAPDMSGQKVTIDAEYVEEKLGDLV 434 (444)
T ss_pred -cCCcCCCCeEEEcHHHHHHHHHHHh
Confidence 0111122234578888887776553
No 257
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=4.2e-10 Score=128.90 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=134.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 286 (745)
+-+|++ +-|.+..++.+ +.++..- +.+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 20 P~~f~d--liGq~~~v~~L-~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 20 PQTFDD--LIGQEAMVRTL-TNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 468888 89999998888 6666532 3345799999999999999999999986432100
Q ss_pred -----Eccchhhhh-------c---cchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhH
Q 004550 287 -----VNGPEVLSK-------F---VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 351 (745)
Q Consensus 287 -----v~~~~l~~~-------~---~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~ 351 (745)
-+|..+... . ....-..+|++.+.+... |.. +...|+||||+|.+. ..
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~-P~~---a~~KVvIIDEad~Ls-------------~~ 147 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR-PVS---ARYKVYIIDEVHMLS-------------TA 147 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc-hhc---CCcEEEEEEChHhCC-------------HH
Confidence 011111110 0 001234677887766543 222 234599999999884 23
Q ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHH
Q 004550 352 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 431 (745)
Q Consensus 352 ~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~l 431 (745)
..+.||..|+.. ...+++|.+|+.++.+.+.+++ |+. .++|..|+.++...+++..+++... -.++..++.+
T Consensus 148 a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lI 219 (598)
T PRK09111 148 AFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALI 219 (598)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 466777777743 3467788888888888889988 764 7999999999999988877664431 2334457778
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 004550 432 AARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 432 a~~t~g~sg~dl~~l~~~A~~~ 453 (745)
++.+.| +.+++.++++.+..+
T Consensus 220 a~~a~G-dlr~al~~Ldkli~~ 240 (598)
T PRK09111 220 ARAAEG-SVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHcCC-CHHHHHHHHHHHHhh
Confidence 888876 677777777665543
No 258
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.6e-10 Score=130.33 Aligned_cols=195 Identities=20% Similarity=0.235 Sum_probs=129.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE------E
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------V 287 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------v 287 (745)
.-.|++ +.|.+..++.| ++++...- .+.++|||||||+|||++|+++|+.+.+..... -
T Consensus 12 P~~f~~--liGq~~i~~~L-~~~l~~~r------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 12 PQRFDE--LVGQEAIATTL-KNALISNR------------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHcCC------------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 467888 88999988887 66665421 224699999999999999999999986521100 0
Q ss_pred ccc-----------hhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHH
Q 004550 288 NGP-----------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 354 (745)
Q Consensus 288 ~~~-----------~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 354 (745)
.|. +++ ....+.....+|++.+.+... +..+ ...|+||||+|.|. ....+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~-p~~~---~~KViIIDEad~Lt-------------~~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFA-PVQA---RWKVYVIDECHMLS-------------TAAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhC-hhcC---CceEEEEECccccC-------------HHHHH
Confidence 010 110 111223456788888776532 2222 23599999999883 33567
Q ss_pred HHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHH
Q 004550 355 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 434 (745)
Q Consensus 355 ~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~ 434 (745)
.||..|+. ....+++|++|+.++.+.+.+++ |+. .++|+.++.++....++...++... -.++..+..++..
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~ 211 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHH
Confidence 78888884 44568888888888889999988 764 6889888888777777655543221 1233447788888
Q ss_pred cCCCCHHHHHHHHHH
Q 004550 435 TKNYSGAELEGVAKS 449 (745)
Q Consensus 435 t~g~sg~dl~~l~~~ 449 (745)
+.| +.+++.++++.
T Consensus 212 s~G-~lr~A~~lLek 225 (620)
T PRK14948 212 SQG-GLRDAESLLDQ 225 (620)
T ss_pred cCC-CHHHHHHHHHH
Confidence 876 34555555554
No 259
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.9e-10 Score=128.44 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=117.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchhh---HHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHEST---KCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~~---~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
....+++|||++|+|||+|+++++++. +..++.+.+.+ +....... ....+.+ |..-++ ...+|+|||+
T Consensus 139 ~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~-f~~~~~~~l~~~~~~~~~-~~~~~~-~~dvLiIDDi 215 (450)
T PRK14087 139 ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE-FARKAVDILQKTHKEIEQ-FKNEIC-QNDVLIIDDV 215 (450)
T ss_pred cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHHhhhHHHH-HHHHhc-cCCEEEEecc
Confidence 344679999999999999999999743 45566664443 32211110 0011222 222223 3479999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHH
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQ 680 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~ 680 (745)
+.+.+ ....++.|..+++.....++ -+|+.+...|..+.. ..+++||. ..+.+++|+.+++.+|+++
T Consensus 216 q~l~~--------k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 216 QFLSY--------KEKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred ccccC--------CHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 98752 13344555555555433333 345533344544432 25668885 7889999999999999986
Q ss_pred c----cC--CCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 681 L----NV--FAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 681 ~----~~--~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
. +. ..++|+...+.....+++|.+..++..+...+... .....|+.+.+.+++++
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~------~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQN------PEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc------cCCCCCCHHHHHHHHhh
Confidence 3 21 36678888888889999999999988775333210 00123555555555554
No 260
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=1.7e-10 Score=116.04 Aligned_cols=180 Identities=12% Similarity=0.216 Sum_probs=113.5
Q ss_pred cCCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCC-CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc
Q 004550 212 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH-VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 290 (745)
Q Consensus 212 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~ 290 (745)
.+.++|++.-+|.-....-..++++... ++..+ .+.++||||||||||+|++++++..+ . ..+...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-~--~~~~~~ 76 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-A--YIIKDI 76 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccC-C--EEcchh
Confidence 3788999986777565444443544321 12222 26799999999999999999988763 2 222211
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEE
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 370 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~ 370 (745)
.. ..+.+. . .++|+|||||.+. +..+-.+++. +...+..+
T Consensus 77 ~~-----------~~~~~~-----~--------~d~lliDdi~~~~-------------~~~lf~l~N~---~~e~g~~i 116 (214)
T PRK06620 77 FF-----------NEEILE-----K--------YNAFIIEDIENWQ-------------EPALLHIFNI---INEKQKYL 116 (214)
T ss_pred hh-----------chhHHh-----c--------CCEEEEeccccch-------------HHHHHHHHHH---HHhcCCEE
Confidence 10 011111 1 2499999999541 1122223222 23345677
Q ss_pred EEEEeCCCCC--CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 004550 371 LIGMTNRKDM--LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 446 (745)
Q Consensus 371 vI~~tn~~~~--id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 446 (745)
+|+++..|.. + |+|++ |+. ..+++..|+.+.+..+++.+..... ...++..++.|+....+ +.+.+.++
T Consensus 117 lits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~-d~r~l~~~ 189 (214)
T PRK06620 117 LLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPR-EYSKIIEI 189 (214)
T ss_pred EEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 8887766654 5 78888 764 4689999999999999988776432 12345558888888875 77778777
Q ss_pred HHHHH
Q 004550 447 AKSAV 451 (745)
Q Consensus 447 ~~~A~ 451 (745)
++...
T Consensus 190 l~~l~ 194 (214)
T PRK06620 190 LENIN 194 (214)
T ss_pred HHHHH
Confidence 77643
No 261
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=1.6e-10 Score=123.17 Aligned_cols=170 Identities=24% Similarity=0.359 Sum_probs=101.3
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC------cEE
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------PKI 286 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~------~~~ 286 (745)
..+.|++ |.|.++.++.+.-.++. + ...|+||+||||||||++||++++.+.... +..
T Consensus 3 ~~~~f~~--i~Gq~~~~~~l~~~~~~-~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~ 66 (334)
T PRK13407 3 KPFPFSA--IVGQEEMKQAMVLTAID-P-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNS 66 (334)
T ss_pred CCCCHHH--hCCHHHHHHHHHHHHhc-c-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhccccccc
Confidence 4678998 99999988877332221 1 114699999999999999999999984211 000
Q ss_pred --Ec-cchh--------hh-------hccchhHHHHHH--HHHHHH-hhc--cccCC--CCCeEEEEEccchhhhhcCCC
Q 004550 287 --VN-GPEV--------LS-------KFVGETEKNIRD--LFADAE-NDQ--RTRGD--QSDLHVIIFDEIDAICKSRGS 341 (745)
Q Consensus 287 --v~-~~~l--------~~-------~~~g~~e~~i~~--~f~~a~-~~~--~~~~~--~~~p~Il~iDEid~l~~~~~~ 341 (745)
+. ++++ .. --.+.++..+-. .++.+- .+. ...|. .....+||+||++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~----- 141 (334)
T PRK13407 67 ARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE----- 141 (334)
T ss_pred CcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-----
Confidence 00 0000 00 000111111100 011110 000 00010 0111299999999874
Q ss_pred CCCCCcchhHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC-CCChhhhCCCCccceEEecCCCH-HHHHHH
Q 004550 342 TRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE-NGRLQI 408 (745)
Q Consensus 342 ~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd~-~~r~~I 408 (745)
..+++.|+..|+.-. ...++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 345555666664321 234689999999755 58999998 9999999998876 899999
Q ss_pred HHHHH
Q 004550 409 LQIHT 413 (745)
Q Consensus 409 l~~~~ 413 (745)
++...
T Consensus 212 l~~~~ 216 (334)
T PRK13407 212 IRRRD 216 (334)
T ss_pred HHHhh
Confidence 98754
No 262
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=7.7e-10 Score=119.06 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=130.6
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC----cEEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----PKIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~----~~~v~~ 289 (745)
+.+|++ +-|.++.++.+ +.++... ...+++|+||||||||++++++++.+.+.. +..+++
T Consensus 13 P~~~~~--~~g~~~~~~~l-~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 13 PRTLDE--IVGQEEIVERL-KSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 467888 78999888877 6655422 122589999999999999999999874321 223333
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
++. .....+++.+.......|.. ...+.+|+|||+|.+.. ...+.|+..++... .+.
T Consensus 77 ~~~------~~~~~~~~~i~~~~~~~~~~--~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~--~~~ 133 (319)
T PRK00440 77 SDE------RGIDVIRNKIKEFARTAPVG--GAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYS--QNT 133 (319)
T ss_pred ccc------cchHHHHHHHHHHHhcCCCC--CCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCC--CCC
Confidence 221 11112333333332222221 12356999999998842 12344555555433 345
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
.+|.++|.+..+.+++.+ |+. .+++++++.++...+++.++++... ..++..++.++..+.| +.+.+.+.++.
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 666777888888888887 766 5899999999999999988765432 1344568888888776 44444445544
Q ss_pred HHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHh
Q 004550 450 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 486 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 486 (745)
+... ...+|.+++..+...
T Consensus 207 ~~~~------------------~~~it~~~v~~~~~~ 225 (319)
T PRK00440 207 AAAT------------------GKEVTEEAVYKITGT 225 (319)
T ss_pred HHHc------------------CCCCCHHHHHHHhCC
Confidence 3321 124777777766544
No 263
>PRK09087 hypothetical protein; Validated
Probab=99.21 E-value=1.3e-10 Score=117.87 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=117.0
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP 615 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~ 615 (745)
..++|+||+|||||+++++++...+..++.. +.+ ..+++..... .+|+|||++.+. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~---~~~-----------~~~~~~~~~~---~~l~iDDi~~~~-----~- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP---NEI-----------GSDAANAAAE---GPVLIEDIDAGG-----F- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH---HHc-----------chHHHHhhhc---CeEEEECCCCCC-----C-
Confidence 4589999999999999999998776554332 111 1112222222 479999999762 1
Q ss_pred cchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHHHHHHc----cCCCHH
Q 004550 616 RFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKKVLKQL----NVFAEE 687 (745)
Q Consensus 616 ~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~Il~~~----~~~~~~ 687 (745)
....|..+++...+.+ +.+||+++..|..+.. ..+++|+. ..+.+.+|+.+++.+++++. +...++
T Consensus 102 -----~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 102 -----DETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -----CHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1234555555543333 5577777766665443 36788985 88999999999999999963 455677
Q ss_pred HHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 688 DVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 688 d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
|+...+.....++++.++.++......+.. ....||...+.++++++.
T Consensus 176 ev~~~La~~~~r~~~~l~~~l~~L~~~~~~--------~~~~it~~~~~~~l~~~~ 223 (226)
T PRK09087 176 HVVYYLVSRMERSLFAAQTIVDRLDRLALE--------RKSRITRALAAEVLNEMG 223 (226)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHHHhhc
Confidence 888877777889999999877665433311 124599999999998763
No 264
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.7e-10 Score=127.86 Aligned_cols=168 Identities=19% Similarity=0.193 Sum_probs=121.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------eEEEeccc-ccccc------c---hhhHHHHHHHHHHHHh---
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------FVKIISAE-SMIGL------H---ESTKCAQIVKVFEDAY--- 592 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~i~v~~~~-~l~g~------~---~~~~~~~i~~~f~~a~--- 592 (745)
+-....||.||.|||||++||.+|+.+++. +....... .-.|. . .....+++|++.+.+.
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 334568999999999999999999876553 11111100 01110 1 1124678999888874
Q ss_pred -cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 593 -KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 593 -~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
++.+.|.+|||++.|. ....++||..|+.. ...|.+|-+|..+..+....+ + .+.++.|..++.
T Consensus 116 ~~~ryKVyiIDEvHMLS----------~~afNALLKTLEEP---P~hV~FIlATTe~~Kip~TIl-S-Rcq~f~fkri~~ 180 (515)
T COG2812 116 SEGRYKVYIIDEVHMLS----------KQAFNALLKTLEEP---PSHVKFILATTEPQKIPNTIL-S-RCQRFDFKRLDL 180 (515)
T ss_pred ccccceEEEEecHHhhh----------HHHHHHHhcccccC---ccCeEEEEecCCcCcCchhhh-h-ccccccccCCCH
Confidence 4567899999999983 55566666555544 346777777777877777554 3 478899999997
Q ss_pred HHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 672 DDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 672 ~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
+++...|.. .+...+++...++.+.+.|++|+.+.+++.+....
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHcc
Confidence 777666665 45678889999999999999999999999998775
No 265
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.20 E-value=2.1e-10 Score=127.14 Aligned_cols=200 Identities=20% Similarity=0.256 Sum_probs=143.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc-EE---Ecc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-KI---VNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~-~~---v~~ 289 (745)
+-+|++ +.|.+...+.| +.++..--.+ .+.||.||.|||||++||.+|+.+++... .. ..|
T Consensus 12 P~~F~e--vvGQe~v~~~L-~nal~~~ri~------------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 12 PKTFDD--VVGQEHVVKTL-SNALENGRIA------------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred cccHHH--hcccHHHHHHH-HHHHHhCcch------------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 567888 89999988887 7777654333 36899999999999999999999976531 10 111
Q ss_pred ---chhhhh----------ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH
Q 004550 290 ---PEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 356 (745)
Q Consensus 290 ---~~l~~~----------~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L 356 (745)
.++... -....-..+|++.+.+.. .|..++ ..|.+|||+|.|. ....|.|
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y-~P~~~r---yKVyiIDEvHMLS-------------~~afNAL 139 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNY-APSEGR---YKVYIIDEVHMLS-------------KQAFNAL 139 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhcc-CCcccc---ceEEEEecHHhhh-------------HHHHHHH
Confidence 111111 011234467777777654 344333 4599999999984 4567889
Q ss_pred HHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcC
Q 004550 357 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 436 (745)
Q Consensus 357 L~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~ 436 (745)
|..++ +....|.+|.+|..++.+++.+++ |+. ++.|..-+.++....|...+.+-.. -..+..+..+|+..+
T Consensus 140 LKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~ 211 (515)
T COG2812 140 LKTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAE 211 (515)
T ss_pred hcccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcC
Confidence 88887 455689999999999999999998 765 5778888888888888777654331 234445777888888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 004550 437 NYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 437 g~sg~dl~~l~~~A~~~a 454 (745)
| +.+|..+++..|....
T Consensus 212 G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 212 G-SLRDALSLLDQAIAFG 228 (515)
T ss_pred C-ChhhHHHHHHHHHHcc
Confidence 7 8889988888887653
No 266
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.20 E-value=1.6e-09 Score=127.26 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccccchh-h---HHHHHHHHHHHHhcCCCeEEEEec
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHES-T---KCAQIVKVFEDAYKSPLSIIILDD 603 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g~~~~-~---~~~~i~~~f~~a~~~~~~il~lDE 603 (745)
+..+++||.|.||+|||++..++|+..|..+++++-+++ ++|.... + .......-|-.|.+.. .+++|||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeeh
Confidence 334679999999999999999999999999999987775 4553211 1 0011112333343333 6999999
Q ss_pred cchhhhcCCCCCcchHHHHHHHHHHHhcCC-----C------CCCcEEEEEecCCCCCC-----CccccccccceEEEcC
Q 004550 604 IERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P------KGKKLLVIGTTSEVSFL-----DSVGICDAFSVTYHVP 667 (745)
Q Consensus 604 id~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~------~~~~v~vI~ttn~~~~l-----~~~~l~~rf~~~i~~p 667 (745)
+.-. +..++..|...|+.-. + ...+..|+||-|.-+.- -|..+..||. ++.+.
T Consensus 1620 iNLa----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d 1688 (4600)
T COG5271 1620 INLA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMD 1688 (4600)
T ss_pred hhhh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEec
Confidence 9653 4566666666665421 1 12356788888764421 2223447877 78889
Q ss_pred CCCHHHHHHHHHHccCCCHHH
Q 004550 668 TLKTDDAKKVLKQLNVFAEED 688 (745)
Q Consensus 668 ~~~~~~~~~Il~~~~~~~~~d 688 (745)
.++.+++..|+...=....+|
T Consensus 1689 ~lt~dDi~~Ia~~~yp~v~~d 1709 (4600)
T COG5271 1689 GLTTDDITHIANKMYPQVNED 1709 (4600)
T ss_pred ccccchHHHHHHhhCCccChH
Confidence 999999999999854333333
No 267
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=2.6e-10 Score=112.95 Aligned_cols=148 Identities=24% Similarity=0.262 Sum_probs=98.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC------------------------eEEEeccccccccchhhHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP------------------------FVKIISAESMIGLHESTKCAQIVKVF 588 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------------------------~i~v~~~~~l~g~~~~~~~~~i~~~f 588 (745)
..+..+||+||+|+|||++|+.++...... +..+ .++ + ..-+.+.++++.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~-~~~---~--~~~~~~~i~~i~ 85 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRL-EPE---G--QSIKVDQVRELV 85 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEe-ccc---c--CcCCHHHHHHHH
Confidence 455779999999999999999999764321 1111 111 0 012335677777
Q ss_pred HHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEE
Q 004550 589 EDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTY 664 (745)
Q Consensus 589 ~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i 664 (745)
+.+.. ....|++|||+|++. ...++.|+..|+..++ ..++|.+|+.+..+.+. +++|. ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~----------~~~~~~Ll~~le~~~~---~~~~il~~~~~~~l~~~-i~sr~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN----------EAAANALLKTLEEPPP---NTLFILITPSPEKLLPT-IRSRC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChHhChHH-HHhhc-EEe
Confidence 77654 456799999999984 4456778888877432 33444456666666663 44554 599
Q ss_pred EcCCCCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHH
Q 004550 665 HVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKK 703 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ 703 (745)
.|++|+.+++.+++++.+ .+++. ...+...++|++|+
T Consensus 151 ~~~~~~~~~~~~~l~~~g-i~~~~-~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQG-ISEEA-AELLLALAGGSPGA 187 (188)
T ss_pred eCCCCCHHHHHHHHHHcC-CCHHH-HHHHHHHcCCCccc
Confidence 999999999999999874 55544 44555556666654
No 268
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=4.9e-10 Score=113.34 Aligned_cols=175 Identities=20% Similarity=0.280 Sum_probs=109.4
Q ss_pred HHhcCCCCceeeeeccCCCCChhHHHHHHHhhC-----CCCeEEEeccccccccchh-hHHHHHHHHHHHHhcCCCeEEE
Q 004550 527 VKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESMIGLHES-TKCAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 527 ~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~-----~~~~i~v~~~~~l~g~~~~-~~~~~i~~~f~~a~~~~~~il~ 600 (745)
+...+......++||||+|+|||++.++++++. +...+.+...+ +...... -....+.+ |....+ ...+|+
T Consensus 26 ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~-f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~ 102 (219)
T PF00308_consen 26 IAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE-FIREFADALRDGEIEE-FKDRLR-SADLLI 102 (219)
T ss_dssp HHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH-HHHHHHHHHHTTSHHH-HHHHHC-TSSEEE
T ss_pred HHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH-HHHHHHHHHHcccchh-hhhhhh-cCCEEE
Confidence 333333445568999999999999999998652 45566664333 3211111 00011222 323333 347999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCc--cccccccc--eEEEcCCCCHHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDS--VGICDAFS--VTYHVPTLKTDDAKK 676 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~--~~l~~rf~--~~i~~p~~~~~~~~~ 676 (745)
||+++.+.+ ....++.|..+++.....++ -+|+++...|..+.. ..+++||. ..+.+.+|+.+++.+
T Consensus 103 iDDi~~l~~--------~~~~q~~lf~l~n~~~~~~k-~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 103 IDDIQFLAG--------KQRTQEELFHLFNRLIESGK-QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp EETGGGGTT--------HHHHHHHHHHHHHHHHHTTS-EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred EecchhhcC--------chHHHHHHHHHHHHHHhhCC-eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 999999862 23456677777776644444 456656566665553 25778886 589999999999999
Q ss_pred HHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHc
Q 004550 677 VLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 677 Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~ 713 (745)
|+++. +...++|+...+......++|.|..++.....
T Consensus 174 il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 174 ILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99973 45678888888888889999999988877554
No 269
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9.2e-10 Score=127.29 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=113.8
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEE--E---------------eccccc-cccchhhHHHHHHHHHHHHhc--
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK--I---------------ISAESM-IGLHESTKCAQIVKVFEDAYK-- 593 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~--v---------------~~~~~l-~g~~~~~~~~~i~~~f~~a~~-- 593 (745)
.+..+||+||+|+|||++|+.+|+...+..-. . ..++.+ +......+.+.++++.+.+..
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p 116 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP 116 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc
Confidence 44567999999999999999999876432100 0 001100 000011234456666655432
Q ss_pred --CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCH
Q 004550 594 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKT 671 (745)
Q Consensus 594 --~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~ 671 (745)
....|+||||+|.|. ....+.|+..|+..+. ..++|+ +++..+.+.+ .+++| +..+.|++++.
T Consensus 117 ~~~~~kVvIIDEa~~L~----------~~a~naLLk~LEepp~--~tv~Il-~t~~~~kll~-tI~SR-~~~i~f~~l~~ 181 (585)
T PRK14950 117 ALARYKVYIIDEVHMLS----------TAAFNALLKTLEEPPP--HAIFIL-ATTEVHKVPA-TILSR-CQRFDFHRHSV 181 (585)
T ss_pred ccCCeEEEEEeChHhCC----------HHHHHHHHHHHhcCCC--CeEEEE-EeCChhhhhH-HHHhc-cceeeCCCCCH
Confidence 346799999999874 4556778888877542 344444 4555544443 23445 46899999998
Q ss_pred HHHHHHHHHc----cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 672 DDAKKVLKQL----NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 672 ~~~~~Il~~~----~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.++..+++.. +...+.+....+...++|++|.+++.++...... ...|+.+++.+++.
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~-----------~~~It~e~V~~ll~ 243 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTY-----------GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCCCCHHHHHHHhc
Confidence 8888777753 4445556666677778899999999998755421 13477777765443
No 270
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.16 E-value=6e-10 Score=120.09 Aligned_cols=199 Identities=16% Similarity=0.211 Sum_probs=131.8
Q ss_pred HHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCC-----CCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEE
Q 004550 525 EQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSII 599 (745)
Q Consensus 525 ~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~-----~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il 599 (745)
..+...+..+...++||||+|+|||+|++++++... ..++.+ .++.+.......--+.-.+-|+.-| ...++
T Consensus 103 ~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~-~se~f~~~~v~a~~~~~~~~Fk~~y--~~dll 179 (408)
T COG0593 103 KAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL-TSEDFTNDFVKALRDNEMEKFKEKY--SLDLL 179 (408)
T ss_pred HHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec-cHHHHHHHHHHHHHhhhHHHHHHhh--ccCee
Confidence 344444444677799999999999999999997642 223433 3333322211111111223566666 44799
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc--ccccccc--eEEEcCCCCHHHHH
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV--GICDAFS--VTYHVPTLKTDDAK 675 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~--~l~~rf~--~~i~~p~~~~~~~~ 675 (745)
+||+|+.+.+. +..+.++...++.+...++ -+|+.+...|..+... .|++||. ..+.+.+|+.+.+.
T Consensus 180 lIDDiq~l~gk--------~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 180 LIDDIQFLAGK--------ERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred eechHhHhcCC--------hhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 99999998732 3346666666666655554 3455444455555432 6779986 77899999999999
Q ss_pred HHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 676 KVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 676 ~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.||+. .+...++|+...+...-..++|+|...++.....+.. ....||.+.+.++|++..
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~--------~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALF--------TKRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--------cCccCcHHHHHHHHHHhh
Confidence 99997 3567788888888888899999999988776555432 123577777777777654
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.15 E-value=2.1e-10 Score=111.31 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-----eEEEeccccccccchhhHHHHHHHHHHHHhc-C---CCeEEEEec
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-----FVKIISAESMIGLHESTKCAQIVKVFEDAYK-S---PLSIIILDD 603 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-----~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-~---~~~il~lDE 603 (745)
+...++++.||||||||+.+.++|+++=.+ .+.++.++. .|.. ...+--+.|..-+- . ...||+|||
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde-RGID---vVRn~IK~FAQ~kv~lp~grhKIiILDE 121 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE-RGID---VVRNKIKMFAQKKVTLPPGRHKIIILDE 121 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc-cccH---HHHHHHHHHHHhhccCCCCceeEEEeec
Confidence 455789999999999999999999875332 333443332 1110 11122245544321 2 335999999
Q ss_pred cchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHH----HHH
Q 004550 604 IERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKK----VLK 679 (745)
Q Consensus 604 id~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~----Il~ 679 (745)
+|++. ...+|+|...|+-.... .-++-++|..+.+-. .+ ...+..++|..++..++.. |.+
T Consensus 122 ADSMT----------~gAQQAlRRtMEiyS~t---tRFalaCN~s~KIiE-PI-QSRCAiLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 122 ADSMT----------AGAQQALRRTMEIYSNT---TRFALACNQSEKIIE-PI-QSRCAILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred cchhh----------hHHHHHHHHHHHHHccc---chhhhhhcchhhhhh-hH-HhhhHhhhhcccCHHHHHHHHHHHHH
Confidence 99974 56788888888765332 234446777664433 12 2347788999999666543 334
Q ss_pred HccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 680 QLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 680 ~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
....-..+|-.+++...+.||+|+.++.++......
T Consensus 187 ~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~ 222 (333)
T KOG0991|consen 187 AEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF 222 (333)
T ss_pred HhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccc
Confidence 445555566667777788999999999999876543
No 272
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.15 E-value=2.9e-10 Score=121.98 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=111.0
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhH---HHHHHHHHHHHhcCCCeEE
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTK---CAQIVKVFEDAYKSPLSII 599 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~---~~~i~~~f~~a~~~~~~il 599 (745)
...+|||+|++||||+++|+++...+ +.||+.++|... ++|...+.. ...-...|..| ..+.|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 34679999999999999999998655 479999998743 112110000 00001224433 34789
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC--CCCc----cccccccc-eEE
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDS----VGICDAFS-VTY 664 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~--~l~~----~~l~~rf~-~~i 664 (745)
|||||+.|. ..++..|+..|+.-. ....++.+|++|+..- .... ..|..|+. ..|
T Consensus 98 ~Ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 98 FLDELATAS----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred EeCChHhCC----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhc
Confidence 999999974 566777777775421 1123578888887641 1221 13345663 579
Q ss_pred EcCCCC--HHHHHHHHHHc--------c-----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcccc
Q 004550 665 HVPTLK--TDDAKKVLKQL--------N-----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 665 ~~p~~~--~~~~~~Il~~~--------~-----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~ 716 (745)
.+||+. .+|+..+++.+ + .++++-+..+...-++|++|+|.++++.+...++
T Consensus 168 ~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~ 234 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHG 234 (329)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 999999 77888777652 1 2455555555555569999999999999887663
No 273
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.15 E-value=7.3e-10 Score=110.74 Aligned_cols=130 Identities=13% Similarity=0.223 Sum_probs=94.9
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhc-CCCeEEEEeccchhh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYK-SPLSIIILDDIERLL 608 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-~~~~il~lDEid~l~ 608 (745)
.|..++||+|++|||||++++++..+. |+.+|.+...+ ...+.++++..+. ..+=|||+|++.-
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~----------L~~l~~l~~~l~~~~~kFIlf~DDLsF-- 117 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED----------LGDLPELLDLLRDRPYKFILFCDDLSF-- 117 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH----------hccHHHHHHHHhcCCCCEEEEecCCCC--
Confidence 578999999999999999999998754 66667663332 2246667766653 3456999998642
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcC-CCCCCcEEEEEecCCCCCCCcc----------------------ccccccceEEE
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLDSV----------------------GICDAFSVTYH 665 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~-~~~~~~v~vI~ttn~~~~l~~~----------------------~l~~rf~~~i~ 665 (745)
+ ..+.-...|...|++- .....+|+|.+|+|+..++... .|..||..++.
T Consensus 118 e-------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~ 190 (249)
T PF05673_consen 118 E-------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLS 190 (249)
T ss_pred C-------CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEE
Confidence 1 1234456677777764 3445689999999987654321 24589999999
Q ss_pred cCCCCHHHHHHHHHHc
Q 004550 666 VPTLKTDDAKKVLKQL 681 (745)
Q Consensus 666 ~p~~~~~~~~~Il~~~ 681 (745)
|.+++.++..+|++.+
T Consensus 191 F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 191 FYPPDQEEYLAIVRHY 206 (249)
T ss_pred ecCCCHHHHHHHHHHH
Confidence 9999999999999975
No 274
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.8e-09 Score=116.38 Aligned_cols=226 Identities=21% Similarity=0.295 Sum_probs=144.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEEc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVN 288 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~ 288 (745)
+.++|++.-+|.-....-.+...+.+.+- .+-..++||||+|.|||+|++++++..... .++.+.
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~g-----------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENPG-----------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhccC-----------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 78999998677666665555444444432 123459999999999999999999887322 245566
Q ss_pred cchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCc
Q 004550 289 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 368 (745)
Q Consensus 289 ~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~ 368 (745)
...++..++-....+--+-|+.-. . ..+++||+++.+..+.. .... +...+..+...++
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~---------~dlllIDDiq~l~gk~~-------~qee----fFh~FN~l~~~~k 209 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-S---------LDLLLIDDIQFLAGKER-------TQEE----FFHTFNALLENGK 209 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-c---------cCeeeechHhHhcCChh-------HHHH----HHHHHHHHHhcCC
Confidence 666666555443332223333333 1 24999999999975431 1222 2222222233355
Q ss_pred EEEEEEeCCCCC---CChhhhCCCCcc--ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHH
Q 004550 369 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 443 (745)
Q Consensus 369 v~vI~~tn~~~~---id~al~r~gRf~--~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 443 (745)
-+++.+-..|.. +.|.|++ ||. ..+.+.+||.+.|..||+........ ..++..+..++.... -+.+++
T Consensus 210 qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~---~i~~ev~~~la~~~~-~nvReL 283 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGI---EIPDEVLEFLAKRLD-RNVREL 283 (408)
T ss_pred EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHhh-ccHHHH
Confidence 555555555655 4688988 664 46889999999999999986654332 234445777777766 378888
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhhcc
Q 004550 444 EGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 444 ~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
+.++.....++... ...+|.+...+++.....+
T Consensus 284 egaL~~l~~~a~~~--------------~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 284 EGALNRLDAFALFT--------------KRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHHhc--------------CccCcHHHHHHHHHHhhcc
Confidence 88888777666542 2257777777777766544
No 275
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-10 Score=121.99 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=124.0
Q ss_pred ccccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccch
Q 004550 501 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHE 577 (745)
Q Consensus 501 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~ 577 (745)
....|+++....+..+++...... .....||+.|.+||||..+|++|...+ +.|||+++|+..--+.-|
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA--------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVA--------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHh--------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 345678888776666655543322 234679999999999999999999876 689999999875322222
Q ss_pred hhHHHHHHHHHHHHhcC--------CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc-----CCC---CCCcEEE
Q 004550 578 STKCAQIVKVFEDAYKS--------PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR-----LPP---KGKKLLV 641 (745)
Q Consensus 578 ~~~~~~i~~~f~~a~~~--------~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~-----~~~---~~~~v~v 641 (745)
++-....+..|.-|... ..+-||||||..|. -.++..|+..|.. +.. ....|-|
T Consensus 292 SELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP----------L~lQaKLLRvLQegEieRvG~~r~ikVDVRi 361 (550)
T COG3604 292 SELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP----------LALQAKLLRVLQEGEIERVGGDRTIKVDVRV 361 (550)
T ss_pred HHHhcccccccccchhccCcceeecCCCeEechhhccCC----------HHHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence 22222333444444321 22579999997763 3344444444432 221 1236899
Q ss_pred EEecCCCCCCCccccccccc---------eEEEcCCCC--HHHHHHHHHH--------cc----CCCHHHHHHHHHHCCC
Q 004550 642 IGTTSEVSFLDSVGICDAFS---------VTYHVPTLK--TDDAKKVLKQ--------LN----VFAEEDVDSASEALND 698 (745)
Q Consensus 642 I~ttn~~~~l~~~~l~~rf~---------~~i~~p~~~--~~~~~~Il~~--------~~----~~~~~d~~~~~~~~~~ 698 (745)
|+|||+. |..+...++|- .-+++||+. .+|+--+... ++ .++++....+.....+
T Consensus 362 IAATNRD--L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wP 439 (550)
T COG3604 362 IAATNRD--LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWP 439 (550)
T ss_pred Eeccchh--HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCC
Confidence 9999984 33333334443 347888888 5555544443 12 3555666666666669
Q ss_pred CcHHHHHHHHHHHHccc
Q 004550 699 MPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 699 ~~ir~ll~~l~~a~~~~ 715 (745)
|++|+|.+++++|+..+
T Consensus 440 GNVRELen~veRavlla 456 (550)
T COG3604 440 GNVRELENVVERAVLLA 456 (550)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 99999999999999877
No 276
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.8e-09 Score=124.91 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=127.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--EEc---
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVN--- 288 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~--- 288 (745)
.-+|++ |.|.+..++.+ +.++... +.+..+|||||||+|||++|+.+|+.+.+.... .-.
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 12 SQTFAE--LVGQEHVVQTL-RNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 567888 88999988887 6665432 123458999999999999999999998532210 000
Q ss_pred c-----------chhh--hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHH
Q 004550 289 G-----------PEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 355 (745)
Q Consensus 289 ~-----------~~l~--~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 355 (745)
| .+++ +.........++++.+.+.. .+.. ....|+||||+|.|. ....+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~-~p~~---~~~kVvIIDEa~~L~-------------~~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQF-RPAL---ARYKVYIIDEVHMLS-------------TAAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhh-Cccc---CCeEEEEEeChHhCC-------------HHHHHH
Confidence 0 0110 00001123345665554432 2221 234699999999884 234566
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHc
Q 004550 356 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 435 (745)
Q Consensus 356 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t 435 (745)
||..++... ...++|.+++..+.+.+.+++ |+. .++|..++..+...+++...++... ..++..+..++..+
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s 211 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAA 211 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 777777533 467777778888888888887 665 6889999999888888876654331 12344577888888
Q ss_pred CCCCHHHHHHHHHHHH
Q 004550 436 KNYSGAELEGVAKSAV 451 (745)
Q Consensus 436 ~g~sg~dl~~l~~~A~ 451 (745)
.| +.+++.+.++...
T Consensus 212 ~G-dlr~al~~LekL~ 226 (585)
T PRK14950 212 TG-SMRDAENLLQQLA 226 (585)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 7777666666543
No 277
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.13 E-value=5.9e-10 Score=119.01 Aligned_cols=170 Identities=21% Similarity=0.365 Sum_probs=103.1
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE------
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------ 286 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------ 286 (745)
+.+.|++ |.|+++.+..++..++ .| ...|+||.||+|||||++||++++.+.......
T Consensus 12 ~~~pf~~--ivGq~~~k~al~~~~~-----~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~ 75 (350)
T CHL00081 12 PVFPFTA--IVGQEEMKLALILNVI-----DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNS 75 (350)
T ss_pred CCCCHHH--HhChHHHHHHHHHhcc-----CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCC
Confidence 5788999 9999998777633322 22 225899999999999999999998874322110
Q ss_pred -Eccchhh-----hhc-------------------cchhHHH------HHHHHHHHHhh-ccccCCCCCeEEEEEccchh
Q 004550 287 -VNGPEVL-----SKF-------------------VGETEKN------IRDLFADAEND-QRTRGDQSDLHVIIFDEIDA 334 (745)
Q Consensus 287 -v~~~~l~-----~~~-------------------~g~~e~~------i~~~f~~a~~~-~~~~~~~~~p~Il~iDEid~ 334 (745)
-+.+++. ... .|.++.. +...|...... .+..-......+||+||++.
T Consensus 76 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 76 HPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred CCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 0001110 000 1112221 11111111100 00000011123999999999
Q ss_pred hhhcCCCCCCCCcchhHHHHHHHHhccC---------c--cCCCcEEEEEEeCCCC-CCChhhhCCCCccceEEecCCC-
Q 004550 335 ICKSRGSTRDGTGVHDSIVNQLLTKIDG---------V--ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD- 401 (745)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~LL~~~d~---------~--~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd- 401 (745)
+.+ .+...|+..|+. . ....++++|++.|..+ .+.+++.. ||...+.+..|+
T Consensus 156 L~~-------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 156 LDD-------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred CCH-------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 853 344445555532 1 1234688899888765 58999999 999999999997
Q ss_pred HHHHHHHHHHHH
Q 004550 402 ENGRLQILQIHT 413 (745)
Q Consensus 402 ~~~r~~Il~~~~ 413 (745)
.+.+.+|++...
T Consensus 221 ~~~e~~il~~~~ 232 (350)
T CHL00081 221 PELRVKIVEQRT 232 (350)
T ss_pred hHHHHHHHHhhh
Confidence 599999998753
No 278
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.6e-09 Score=116.87 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=105.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC-------CeEEE---------------eccccc-cccc--h-------hhH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------PFVKI---------------ISAESM-IGLH--E-------STK 580 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~-------~~i~v---------------~~~~~l-~g~~--~-------~~~ 580 (745)
..+..+||+||+|+|||++|+.+|+...+ +.... ..|+.+ +... + .-+
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~ 122 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT 122 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC
Confidence 44557999999999999999999976543 11000 011111 1100 1 112
Q ss_pred HHHHHHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccc
Q 004550 581 CAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 656 (745)
Q Consensus 581 ~~~i~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l 656 (745)
.+.++++-+... .....|++|||+|.+. ....++|+..|+..+. +. ++|..|+.++.+.+ .+
T Consensus 123 vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------~~aanaLLk~LEEpp~--~~-~fiLit~~~~~llp-tI 188 (351)
T PRK09112 123 VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------RNAANAILKTLEEPPA--RA-LFILISHSSGRLLP-TI 188 (351)
T ss_pred HHHHHHHHHHhhhccccCCceEEEEEchhhcC----------HHHHHHHHHHHhcCCC--Cc-eEEEEECChhhccH-HH
Confidence 455666554433 3456799999999974 4556778888876432 23 33444566766655 45
Q ss_pred ccccceEEEcCCCCHHHHHHHHHHccCCCH--HHHHHHHHHCCCCcHHHHHHHHHH
Q 004550 657 CDAFSVTYHVPTLKTDDAKKVLKQLNVFAE--EDVDSASEALNDMPIKKLYMLIEM 710 (745)
Q Consensus 657 ~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~--~d~~~~~~~~~~~~ir~ll~~l~~ 710 (745)
++|. ..++|++|+.+++.++|++.+...+ ++....+...++|+.+.++++++.
T Consensus 189 rSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 189 RSRC-QPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred Hhhc-cEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 6664 7999999999999999998532221 444555667889999999888754
No 279
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=4.4e-10 Score=118.07 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=107.4
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccccch-----hhH-HHHHHHHHHHHhcCCCeEEEEec
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHE-----STK-CAQIVKVFEDAYKSPLSIIILDD 603 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g~~~-----~~~-~~~i~~~f~~a~~~~~~il~lDE 603 (745)
.+++||.||||||||++|+.+|..++.++++++.... ++|... +.. .......+..|.+ .+.++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999975544 455421 110 1112234455554 348899999
Q ss_pred cchhhhcCCCCCcchHHHHHHHHHHHhc-----CCC------CCCcEEEEEecCCCCCCCc-----------cccccccc
Q 004550 604 IERLLEYVPIGPRFSNIISQTMLVLLKR-----LPP------KGKKLLVIGTTSEVSFLDS-----------VGICDAFS 661 (745)
Q Consensus 604 id~l~~~~~~g~~~~~~~~~~Ll~~l~~-----~~~------~~~~v~vI~ttn~~~~l~~-----------~~l~~rf~ 661 (745)
||+.- ..++..|..+|+. ++. ......||||+|..+.-|. ..+.+||.
T Consensus 143 in~a~----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGR----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccC----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 99863 3344454445442 111 1225789999998764432 23458999
Q ss_pred eEEEcCCCCHHHHHHHHHHc-cCCC---HHHHHHHH-------HH---C---C-CCcHHHHHHHHHHHHc
Q 004550 662 VTYHVPTLKTDDAKKVLKQL-NVFA---EEDVDSAS-------EA---L---N-DMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 662 ~~i~~p~~~~~~~~~Il~~~-~~~~---~~d~~~~~-------~~---~---~-~~~ir~ll~~l~~a~~ 713 (745)
..+.+..|+.++-.+|+... .... ++++.+.+ .. . + +.+.|.++..++.+..
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEI 282 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHh
Confidence 88999999988888888764 2222 23332222 21 0 0 5577888777766553
No 280
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.12 E-value=1e-09 Score=103.00 Aligned_cols=126 Identities=37% Similarity=0.507 Sum_probs=76.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHH---HHHHHHHHHhhccccCCCCCeEEEE
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKN---IRDLFADAENDQRTRGDQSDLHVII 328 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~---i~~~f~~a~~~~~~~~~~~~p~Il~ 328 (745)
..++++++||||||||++++.+++.+. ...+..+++.+............ ....+.... ...+.+|+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~li 89 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE--------KAKPGVLF 89 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhc--------cCCCeEEE
Confidence 456899999999999999999999872 34556677766554332221111 011111111 12356999
Q ss_pred EccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCC--CCChhhhCCCCccceEEec
Q 004550 329 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD--MLDEALLRPGRLEVQVEIS 398 (745)
Q Consensus 329 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~--~id~al~r~gRf~~~i~i~ 398 (745)
+||++.+.+. ....+...+...........++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 90 lDe~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 90 IDEIDSLSRG---------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EeChhhhhHH---------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 9999987211 11222222222221111236789999998877 67888877 988777765
No 281
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=4e-10 Score=129.67 Aligned_cols=193 Identities=18% Similarity=0.216 Sum_probs=120.8
Q ss_pred ccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccc-------
Q 004550 503 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM------- 572 (745)
Q Consensus 503 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l------- 572 (745)
..++++....+.++.+.+.... ....++||+|++|||||++|++++..+ +.||+.++|...-
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a--------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~ 266 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA--------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESE 266 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh--------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHH
Confidence 3456666665555555544433 235679999999999999999999775 5799999987531
Q ss_pred -cccchhhHHHHH---HHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--C-C-----CCcEE
Q 004550 573 -IGLHESTKCAQI---VKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--P-K-----GKKLL 640 (745)
Q Consensus 573 -~g~~~~~~~~~i---~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~-~-----~~~v~ 640 (745)
+|...+...... ...|..| ..+.||||||+.|. ..++..|+..++.-. . . ..++.
T Consensus 267 lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 333 (534)
T TIGR01817 267 LFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS----------PAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333 (534)
T ss_pred HcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC----------HHHHHHHHHHHhcCcEEECCCCceEeecEE
Confidence 111100000000 0112222 34789999999984 556777777775421 0 0 12477
Q ss_pred EEEecCCCC--CCCcc----ccccccc-eEEEcCCCC--HHHHHHHHHHc-----------cCCCHHHHHHHHHHCCCCc
Q 004550 641 VIGTTSEVS--FLDSV----GICDAFS-VTYHVPTLK--TDDAKKVLKQL-----------NVFAEEDVDSASEALNDMP 700 (745)
Q Consensus 641 vI~ttn~~~--~l~~~----~l~~rf~-~~i~~p~~~--~~~~~~Il~~~-----------~~~~~~d~~~~~~~~~~~~ 700 (745)
+|++|+..- .+... .|..|+. ..|.+||+. .+|+..+++.. ..++++-+..+....++|+
T Consensus 334 iI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGN 413 (534)
T TIGR01817 334 LVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGN 413 (534)
T ss_pred EEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCCh
Confidence 888887642 11111 1223443 578999998 68887777652 1355555555555556999
Q ss_pred HHHHHHHHHHHHcccc
Q 004550 701 IKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 701 ir~ll~~l~~a~~~~~ 716 (745)
+|+|.++++.+...+.
T Consensus 414 vrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 414 VRELENCLERTATLSR 429 (534)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999987664
No 282
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=6.8e-10 Score=127.13 Aligned_cols=169 Identities=10% Similarity=0.094 Sum_probs=94.7
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccc-------cc---------cccchhhHHHHHHHHHHHHh-----
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE-------SM---------IGLHESTKCAQIVKVFEDAY----- 592 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~-------~l---------~g~~~~~~~~~i~~~f~~a~----- 592 (745)
+...++|+||||||||++++.+|...+..++.-..+- .. ++.. ....+.+++++..|.
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~ 187 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQM 187 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcc
Confidence 3345899999999999999999988876543310010 00 0011 123344555565553
Q ss_pred -----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHH-HHhcCCCCCCcEEEEEecCC-CC-------C-------C
Q 004550 593 -----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLV-LLKRLPPKGKKLLVIGTTSE-VS-------F-------L 651 (745)
Q Consensus 593 -----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~-~l~~~~~~~~~v~vI~ttn~-~~-------~-------l 651 (745)
.....|||||||+.+... ... .++.++. ... ..+ ++.+|++++. +. . +
T Consensus 188 ~g~~~~~~~~IILIDEiPn~~~r------~~~-~lq~lLr~~~~---e~~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL 256 (637)
T TIGR00602 188 LGDDLMTDKKIILVEDLPNQFYR------DTR-ALHEILRWKYV---SIG-RCPLVFIITESLEGDNNQRRLLFPAETIM 256 (637)
T ss_pred cccccCCceeEEEeecchhhchh------hHH-HHHHHHHHHhh---cCC-CceEEEEecCCccccccccccccchhccc
Confidence 235679999999987621 222 3444433 221 122 2333333332 11 1 1
Q ss_pred CccccccccceEEEcCCCCHHHHH----HHHHHccC-------CCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 652 DSVGICDAFSVTYHVPTLKTDDAK----KVLKQLNV-------FAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 652 ~~~~l~~rf~~~i~~p~~~~~~~~----~Il~~~~~-------~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
.+..+......+|.|+|++..++. .|++.... ..+.+....+...+.||+|.+++.||.+...
T Consensus 257 ~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 257 NKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred CHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 122222223457999999988844 44443211 1123444444457899999999999998543
No 283
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.6e-09 Score=115.87 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCCceeeeeccCCCCChhHHHHHHHhhCCCCe----------------EEEeccccc-c---ccchhhHHHHHHHHHHHH
Q 004550 532 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPF----------------VKIISAESM-I---GLHESTKCAQIVKVFEDA 591 (745)
Q Consensus 532 ~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~----------------i~v~~~~~l-~---g~~~~~~~~~i~~~f~~a 591 (745)
.+.+..+||+||+|+|||++|+++|....+.- ..-+.|+.+ + +....-+.+.+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 45567799999999999999999997653310 000112211 1 011112456788887776
Q ss_pred hc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcC
Q 004550 592 YK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVP 667 (745)
Q Consensus 592 ~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p 667 (745)
.. +...|++||++|++. ....++|+..|+..+ .++++|-+|+.++.+.+ -+++| +..++|+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~----------~~aaNaLLK~LEEPp---~~~~fiL~t~~~~~ll~-TI~SR-c~~~~~~ 163 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN----------RNAANALLKSLEEPS---GDTVLLLISHQPSRLLP-TIKSR-CQQQACP 163 (328)
T ss_pred hhccccCCCeEEEECChhhCC----------HHHHHHHHHHHhCCC---CCeEEEEEECChhhCcH-HHHhh-ceeeeCC
Confidence 53 456799999999974 567778888887753 35566678888877776 44455 6679999
Q ss_pred CCCHHHHHHHHHHcc-CCCHHHHHHHHHHCCCCcHHHHHHH
Q 004550 668 TLKTDDAKKVLKQLN-VFAEEDVDSASEALNDMPIKKLYML 707 (745)
Q Consensus 668 ~~~~~~~~~Il~~~~-~~~~~d~~~~~~~~~~~~ir~ll~~ 707 (745)
+|+.+++.+.|.... ...++++..+ ...+.|+...++.+
T Consensus 164 ~~~~~~~~~~L~~~~~~~~~~~~~~~-l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPESDERERIEL-LTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccCChHHHHHH-HHHcCCCHHHHHHH
Confidence 999999998888743 3445554444 44556656555444
No 284
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=1.3e-09 Score=107.95 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=100.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcE-------EEccc--------hhh--hhcc-chhHHHHHHHHHHHHhhcc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------IVNGP--------EVL--SKFV-GETEKNIRDLFADAENDQR 316 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~-------~v~~~--------~l~--~~~~-g~~e~~i~~~f~~a~~~~~ 316 (745)
+..+|||||+|+|||++|+.+++.+.+.... ..+|. ++. .... .-..+.++++.+.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~- 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP- 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc-
Confidence 4579999999999999999999998542000 00000 000 0000 012345666666655432
Q ss_pred ccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEE
Q 004550 317 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 396 (745)
Q Consensus 317 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~ 396 (745)
. .+...|++|||+|.+.+ ...+.||..|+.. .....+|.+|+.+..+.+++++ |+. .++
T Consensus 93 ~---~~~~kviiide~~~l~~-------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~ 151 (188)
T TIGR00678 93 Q---ESGRRVVIIEDAERMNE-------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLP 151 (188)
T ss_pred c---cCCeEEEEEechhhhCH-------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-Eee
Confidence 1 12356999999999842 2456678887753 3466777778888899999998 764 899
Q ss_pred ecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCC
Q 004550 397 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 438 (745)
Q Consensus 397 i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~ 438 (745)
+++|+.++..++++.+ . + ++..++.++..+.|-
T Consensus 152 ~~~~~~~~~~~~l~~~----g----i-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G----I-SEEAAELLLALAGGS 184 (188)
T ss_pred CCCCCHHHHHHHHHHc----C----C-CHHHHHHHHHHcCCC
Confidence 9999999999888765 1 2 234466777777653
No 285
>PRK09087 hypothetical protein; Validated
Probab=99.10 E-value=6.4e-10 Score=112.95 Aligned_cols=201 Identities=19% Similarity=0.166 Sum_probs=120.2
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchh
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 292 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l 292 (745)
+..+|++.-+|+-+...-.++++. + + .+...++|+||+|+|||+|++++++... ..+++..++
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~-------~------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~ 78 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHW-------P------N-WPSPVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEI 78 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhc-------c------c-CCCCeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHc
Confidence 678899975666555432222221 1 1 2234599999999999999999998752 234444322
Q ss_pred hhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEE
Q 004550 293 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 372 (745)
Q Consensus 293 ~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI 372 (745)
... ++..... .+|+|||+|.+.. .... |...++.....+..++|
T Consensus 79 ~~~-----------~~~~~~~-----------~~l~iDDi~~~~~----------~~~~----lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 79 GSD-----------AANAAAE-----------GPVLIEDIDAGGF----------DETG----LFHLINSVRQAGTSLLM 122 (226)
T ss_pred chH-----------HHHhhhc-----------CeEEEECCCCCCC----------CHHH----HHHHHHHHHhCCCeEEE
Confidence 111 1111111 1889999997621 0111 33333333344556777
Q ss_pred EEeCCCCC---CChhhhCCCCc--cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 004550 373 GMTNRKDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 447 (745)
Q Consensus 373 ~~tn~~~~---id~al~r~gRf--~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~ 447 (745)
+++..|.. ..+.+++ |+ ...+++..|+.++|.+|++.+++... ...++..++.|++...+ +.+.+..++
T Consensus 123 ts~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---~~l~~ev~~~La~~~~r-~~~~l~~~l 196 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ---LYVDPHVVYYLVSRMER-SLFAAQTIV 196 (226)
T ss_pred ECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhh-hHHHHHHHH
Confidence 66655543 3688888 76 36899999999999999999887643 12345568888888874 455555544
Q ss_pred HHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHh
Q 004550 448 KSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 486 (745)
Q Consensus 448 ~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~ 486 (745)
......++.. ...+|..-+.+++..
T Consensus 197 ~~L~~~~~~~--------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 197 DRLDRLALER--------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHh--------------CCCCCHHHHHHHHHh
Confidence 4443333321 234666666666654
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.10 E-value=8.3e-10 Score=121.09 Aligned_cols=188 Identities=16% Similarity=0.228 Sum_probs=109.0
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCC--CeE--EE--eccccccccc-hhhHHHHHHHHHHHHhcC---CCeEEEEecc
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDF--PFV--KI--ISAESMIGLH-ESTKCAQIVKVFEDAYKS---PLSIIILDDI 604 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~--~~i--~v--~~~~~l~g~~-~~~~~~~i~~~f~~a~~~---~~~il~lDEi 604 (745)
..++||+||||||||++|+++|...+. +|. .+ ..+..++|.. ..... -..-|....+. ...++|+|||
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~--~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK--DEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh--hcCchhhhcCCccccccEEeeccc
Confidence 468999999999999999999986542 333 22 2455566632 11000 01122222221 2249999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCCCCC--ccccccccceEEEcCCCC-HHH
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSFLD--SVGICDAFSVTYHVPTLK-TDD 673 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~~l~--~~~l~~rf~~~i~~p~~~-~~~ 673 (745)
.++ +..+++.|+..|+.-. .-..+ ++++|||....-+ ...+..||-..+.+|+|+ .++
T Consensus 117 ~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~r-fiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~ 185 (498)
T PRK13531 117 WKA----------GPAILNTLLTAINERRFRNGAHEEKIPMR-LLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKAN 185 (498)
T ss_pred ccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCc-EEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHH
Confidence 875 4677888888884321 11123 4444557533211 014558998899999998 566
Q ss_pred HHHHHHHcc-----------CCCHHHHHHHHHHCC----C----------------------CcHHHHHHHHHHHHcccc
Q 004550 674 AKKVLKQLN-----------VFAEEDVDSASEALN----D----------------------MPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 674 ~~~Il~~~~-----------~~~~~d~~~~~~~~~----~----------------------~~ir~ll~~l~~a~~~~~ 716 (745)
..+++.... ..+.+|+..+-.... + .+-|..+.++..+...
T Consensus 186 e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~-- 263 (498)
T PRK13531 186 FRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS-- 263 (498)
T ss_pred HHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH--
Confidence 677776421 245566555443333 1 2333333333333332
Q ss_pred CCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 717 GGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 717 ~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
|..+|+..|+.+|+. .+..|+
T Consensus 264 -----A~l~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 264 -----AFFSGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred -----HHHCCCCCCCHHHHH-HhHHHh
Confidence 345799999999998 666553
No 287
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=1.4e-09 Score=116.21 Aligned_cols=168 Identities=20% Similarity=0.297 Sum_probs=97.6
Q ss_pred CcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC------CCcE---
Q 004550 215 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG------MEPK--- 285 (745)
Q Consensus 215 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~------~~~~--- 285 (745)
+.|+. |.|.++.+..++-.++ .| ...+++|.|+||+|||+++|+++..+.. .++.
T Consensus 1 ~pf~~--ivgq~~~~~al~~~~~-----~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~ 64 (337)
T TIGR02030 1 FPFTA--IVGQDEMKLALLLNVI-----DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSP 64 (337)
T ss_pred CCccc--cccHHHHHHHHHHHhc-----CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCC
Confidence 34666 9999998877644333 11 1347999999999999999999988731 0000
Q ss_pred ------EEccchh----------------hhhccchhHHHHHHH--HHHH-Hhhc----cccCCCCCeEEEEEccchhhh
Q 004550 286 ------IVNGPEV----------------LSKFVGETEKNIRDL--FADA-ENDQ----RTRGDQSDLHVIIFDEIDAIC 336 (745)
Q Consensus 286 ------~v~~~~l----------------~~~~~g~~e~~i~~~--f~~a-~~~~----~~~~~~~~p~Il~iDEid~l~ 336 (745)
..+|... ..--.|.++..+-.- ++.+ .... +..-......+||+||++.+.
T Consensus 65 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~ 144 (337)
T TIGR02030 65 SDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE 144 (337)
T ss_pred CCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC
Confidence 0000000 000001111111111 1111 0000 000001112399999999974
Q ss_pred hcCCCCCCCCcchhHHHHHHHHhccCc-----------cCCCcEEEEEEeCCCC-CCChhhhCCCCccceEEecCCCH-H
Q 004550 337 KSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE-N 403 (745)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd~-~ 403 (745)
..+...|+..|+.- ....++++|+++|..+ .+.+++.. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 23445555555321 1224688899988755 68999999 9999999999976 8
Q ss_pred HHHHHHHHHH
Q 004550 404 GRLQILQIHT 413 (745)
Q Consensus 404 ~r~~Il~~~~ 413 (745)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8999998743
No 288
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.09 E-value=6.7e-10 Score=118.43 Aligned_cols=190 Identities=14% Similarity=0.193 Sum_probs=111.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC-------CC--CeEEEec---------------------------cccccccchhh
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS-------DF--PFVKIIS---------------------------AESMIGLHEST 579 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~-------~~--~~i~v~~---------------------------~~~l~g~~~~~ 579 (745)
.|+||+||||||||++|+++|..+ ++ ++.++.. .+.++|...-+
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 689999999999999999999876 22 2221110 01133321100
Q ss_pred HH-HHHHHHHHH--HhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----------CCCCcEEEEEecC
Q 004550 580 KC-AQIVKVFED--AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTS 646 (745)
Q Consensus 580 ~~-~~i~~~f~~--a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vI~ttn 646 (745)
.. ..-...|.. ..+....+||+|||+++ +..+++.|++.|+.-. ....++++++|+|
T Consensus 110 ~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl----------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~N 179 (334)
T PRK13407 110 RALTRGEKAFEPGLLARANRGYLYIDEVNLL----------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGN 179 (334)
T ss_pred hhhhcCCeeecCCceEEcCCCeEEecChHhC----------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCC
Confidence 00 000001111 01122369999999997 3667778888776421 1234788999988
Q ss_pred CCCCCCccccccccceEEEcCCCCH-HHHHHHHHHccCC-----------------CHHHHHHHH---------------
Q 004550 647 EVSFLDSVGICDAFSVTYHVPTLKT-DDAKKVLKQLNVF-----------------AEEDVDSAS--------------- 693 (745)
Q Consensus 647 ~~~~l~~~~l~~rf~~~i~~p~~~~-~~~~~Il~~~~~~-----------------~~~d~~~~~--------------- 693 (745)
..+.--+..+..||...+.++++.. ++..+|+.+...+ ..+++..+-
T Consensus 180 P~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~y 259 (334)
T PRK13407 180 PEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHD 259 (334)
T ss_pred cccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHH
Confidence 6543223356699999999998885 7777888752111 112222222
Q ss_pred -----HHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHH
Q 004550 694 -----EALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDM 742 (745)
Q Consensus 694 -----~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~ 742 (745)
......+.|--+.++..|+..| ..+|++.|+.+|+.++..-+
T Consensus 260 i~~l~~~~~~~s~Ra~i~l~~aA~a~A-------~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 260 CAALCIALGSDGLRGELTLLRAARALA-------AFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHH-------HHcCCCeeCHHHHHHHHHHh
Confidence 2222234555555666665554 34689999999998877544
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=8.6e-10 Score=120.03 Aligned_cols=124 Identities=28% Similarity=0.496 Sum_probs=76.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCC----cEEEc------cchhhhhc----cchh--HHHHHHHHHHHHhhcccc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGME----PKIVN------GPEVLSKF----VGET--EKNIRDLFADAENDQRTR 318 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~----~~~v~------~~~l~~~~----~g~~--e~~i~~~f~~a~~~~~~~ 318 (745)
.++++|+||||||||++|+.+|..+.+.. +..+. ..+++..+ .|-. ...+.+++..|....
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p--- 270 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP--- 270 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcc---
Confidence 46899999999999999999999885321 11111 22333222 1110 112334445554332
Q ss_pred CCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc--------------------CccCCCcEEEEEEeCCC
Q 004550 319 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID--------------------GVESLNNVLLIGMTNRK 378 (745)
Q Consensus 319 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d--------------------~~~~~~~v~vI~~tn~~ 378 (745)
..|++||||||+.....+ +...++..|+ .+.-..++.+|||+|..
T Consensus 271 ---~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 271 ---EKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred ---cCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcc
Confidence 236899999999754222 2222222222 24456789999999998
Q ss_pred C----CCChhhhCCCCccceEEecC
Q 004550 379 D----MLDEALLRPGRLEVQVEISL 399 (745)
Q Consensus 379 ~----~id~al~r~gRf~~~i~i~~ 399 (745)
+ .+|.|++| ||. .|++.+
T Consensus 336 Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 336 DRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccchhhccHHHHh--hhh-eEEecC
Confidence 7 69999999 986 466664
No 290
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.6e-09 Score=121.26 Aligned_cols=200 Identities=20% Similarity=0.256 Sum_probs=132.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 286 (745)
+-+|++ |-|.++.++.+ +.++... ..+..+|||||+|+|||++|+.+|+.+.+.....
T Consensus 13 P~~f~~--viGq~~~~~~L-~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 13 PSTFES--VVGQEALTTTL-KNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 578898 88999988888 6666432 2234699999999999999999999985321100
Q ss_pred -Eccchhhh-------hccc---hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHH
Q 004550 287 -VNGPEVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 355 (745)
Q Consensus 287 -v~~~~l~~-------~~~g---~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~ 355 (745)
-+|..+.. .+-+ .....++++.+.+... |..+ ...|++|||+|.+. ....+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~-P~~~---~~KVvIIdea~~Ls-------------~~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIP-PQIG---KYKIYIIDEVHMLS-------------QAAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhC-cccC---CcEEEEEECcccCC-------------HHHHHH
Confidence 00000000 0111 1234567777666432 2222 24599999999883 234667
Q ss_pred HHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHc
Q 004550 356 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 435 (745)
Q Consensus 356 LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t 435 (745)
|+..|+.. ....++|.+|+.+..|-+.+++ |+. .++|..++.++....++..+.+... -.++..+..++..+
T Consensus 141 LLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s 212 (614)
T PRK14971 141 FLKTLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 88888753 3467788888888899999998 764 6999999999988888876655431 12334578888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004550 436 KNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 436 ~g~sg~dl~~l~~~A~~~a 454 (745)
.| +.+++.++++....++
T Consensus 213 ~g-dlr~al~~Lekl~~y~ 230 (614)
T PRK14971 213 DG-GMRDALSIFDQVVSFT 230 (614)
T ss_pred CC-CHHHHHHHHHHHHHhc
Confidence 65 6666666666555443
No 291
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-09 Score=109.58 Aligned_cols=178 Identities=22% Similarity=0.299 Sum_probs=114.4
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHH-HHHHHHHHHH----hcCCCeEEEEeccchhhhc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKC-AQIVKVFEDA----YKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~-~~i~~~f~~a----~~~~~~il~lDEid~l~~~ 610 (745)
.++||.||+|||||.+|+.+|+.++.||.-.+...+--.-|.++.. .-+.++...| .+....||+|||||+++..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 5799999999999999999999999999766554432122334433 3344555443 2345689999999999975
Q ss_pred CC---CCCcc-hHHHHHHHHHHHhcC----CCCC--------------CcEEEEEec-----------------------
Q 004550 611 VP---IGPRF-SNIISQTMLVLLKRL----PPKG--------------KKLLVIGTT----------------------- 645 (745)
Q Consensus 611 ~~---~g~~~-~~~~~~~Ll~~l~~~----~~~~--------------~~v~vI~tt----------------------- 645 (745)
.. +.-.+ .+-++|+||..+++. |+.+ .++++|+.-
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~ 257 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAE 257 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccccc
Confidence 42 22223 356999999999883 3322 134554321
Q ss_pred CCC-C-------C---CCcc---------ccccccceEEEcCCCCHHHHHHHHHHc------------------cCCCHH
Q 004550 646 SEV-S-------F---LDSV---------GICDAFSVTYHVPTLKTDDAKKVLKQL------------------NVFAEE 687 (745)
Q Consensus 646 n~~-~-------~---l~~~---------~l~~rf~~~i~~p~~~~~~~~~Il~~~------------------~~~~~~ 687 (745)
... + . +.+. .+.+|+..+-.+.+++.+++.+||..- ..|.++
T Consensus 258 ~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~ 337 (408)
T COG1219 258 VKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEE 337 (408)
T ss_pred ccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHH
Confidence 100 0 0 1111 133899999999999999999999851 146666
Q ss_pred HHHHHHHHCC--CCcHHHHHHHHHHHHc
Q 004550 688 DVDSASEALN--DMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 688 d~~~~~~~~~--~~~ir~ll~~l~~a~~ 713 (745)
.+.++.+..- .-++|-|..++|....
T Consensus 338 AL~~IA~~A~~rkTGARGLRsI~E~~ll 365 (408)
T COG1219 338 ALKAIAKKAIERKTGARGLRSIIEELLL 365 (408)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6666555432 5566777777665543
No 292
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=1.5e-09 Score=116.67 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=119.3
Q ss_pred eeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccc--------cc
Q 004550 506 MVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IG 574 (745)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l--------~g 574 (745)
+++....+..+.+.+.... ....+||++|++||||+++|+++...+ +.||+.++|...- +|
T Consensus 8 liG~S~~~~~~~~~i~~~a--------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg 79 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA--------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFG 79 (326)
T ss_pred cEECCHHHHHHHHHHHHHh--------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcc
Confidence 4554444455554444332 234679999999999999999998765 4799999887531 11
Q ss_pred cchhhH---HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--CC------CCcEEEEE
Q 004550 575 LHESTK---CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--PK------GKKLLVIG 643 (745)
Q Consensus 575 ~~~~~~---~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~~------~~~v~vI~ 643 (745)
...+.. ...-...|..| ....|||||||.|. ..+++.|+..++.-. .. ..++.||+
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 146 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP----------MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (326)
T ss_pred ccccccCCcccccCCchhcc---CCCeEEeCChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 110000 00001223333 34689999999984 557777777776421 11 12577888
Q ss_pred ecCCCC--CCCc----ccccccc-ceEEEcCCCC--HHHHHHHHHHc-------------cCCCHHHHHHHHHHCCCCcH
Q 004550 644 TTSEVS--FLDS----VGICDAF-SVTYHVPTLK--TDDAKKVLKQL-------------NVFAEEDVDSASEALNDMPI 701 (745)
Q Consensus 644 ttn~~~--~l~~----~~l~~rf-~~~i~~p~~~--~~~~~~Il~~~-------------~~~~~~d~~~~~~~~~~~~i 701 (745)
+|+..- .... ..|..|| ...|.+||+. .+|+..+++.+ ..++++-+..+...-++|++
T Consensus 147 ~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNv 226 (326)
T PRK11608 147 ATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNI 226 (326)
T ss_pred eCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 877631 1111 1344567 4689999999 67887777652 13455555656666669999
Q ss_pred HHHHHHHHHHHcccc
Q 004550 702 KKLYMLIEMAAQGEQ 716 (745)
Q Consensus 702 r~ll~~l~~a~~~~~ 716 (745)
|+|.++++.+...+.
T Consensus 227 rEL~~vl~~a~~~~~ 241 (326)
T PRK11608 227 RELKNVVERSVYRHG 241 (326)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887543
No 293
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.08 E-value=7.7e-10 Score=130.16 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=116.1
Q ss_pred ceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------cc
Q 004550 505 GMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MI 573 (745)
Q Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~ 573 (745)
.+++....+.++++.+.... ....++||+|++||||+++|+++...+ +.||+.++|... ++
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a--------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elf 397 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA--------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL 397 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh--------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhc
Confidence 34444444444444443332 224569999999999999999999765 479999998653 22
Q ss_pred ccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--CCC------CcEEEEEec
Q 004550 574 GLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--PKG------KKLLVIGTT 645 (745)
Q Consensus 574 g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~~~------~~v~vI~tt 645 (745)
|+..+.....-...|+.| ..+.||||||+.|. ..++..|+..++.-. +.+ .++.+|+||
T Consensus 398 g~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t 464 (638)
T PRK11388 398 GSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS----------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATT 464 (638)
T ss_pred CCCCcCccCCCCCceeEC---CCCEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEec
Confidence 321110000001123333 34789999999974 556667777775421 101 156788888
Q ss_pred CCCC--CCCcc----cccccc-ceEEEcCCCC--HHHHHHHHHHc--------c---CCCHHHHHHHHHHCCCCcHHHHH
Q 004550 646 SEVS--FLDSV----GICDAF-SVTYHVPTLK--TDDAKKVLKQL--------N---VFAEEDVDSASEALNDMPIKKLY 705 (745)
Q Consensus 646 n~~~--~l~~~----~l~~rf-~~~i~~p~~~--~~~~~~Il~~~--------~---~~~~~d~~~~~~~~~~~~ir~ll 705 (745)
+..- ..... .|..|+ ...|.+||+. .+|+..+++.. + .++++-+..+...-++|++|+|.
T Consensus 465 ~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~ 544 (638)
T PRK11388 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELR 544 (638)
T ss_pred cCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHH
Confidence 7642 11111 122233 4678999999 46777777752 1 24555455555555599999999
Q ss_pred HHHHHHHcccc
Q 004550 706 MLIEMAAQGEQ 716 (745)
Q Consensus 706 ~~l~~a~~~~~ 716 (745)
++++.+...++
T Consensus 545 ~~l~~~~~~~~ 555 (638)
T PRK11388 545 SVIENLALSSD 555 (638)
T ss_pred HHHHHHHHhCC
Confidence 99999887654
No 294
>PHA02244 ATPase-like protein
Probab=99.08 E-value=1.6e-09 Score=114.87 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhh---ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK---FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~---~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
...+|||+||||||||++|+++|..+ +.+++.+++..-... +..........-|-.|... ..+|+||
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~---------GgvLiLD 187 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKK---------GGLFFID 187 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChHHHhhcccccccccccchHHHHHhhc---------CCEEEEe
Confidence 34579999999999999999999998 566666663210000 1111111111112222221 2499999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHH-----hccC-ccCCCcEEEEEEeCCC-----------CCCChhhhCCCCccc
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLT-----KIDG-VESLNNVLLIGMTNRK-----------DMLDEALLRPGRLEV 393 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~-----~~d~-~~~~~~v~vI~~tn~~-----------~~id~al~r~gRf~~ 393 (745)
|++.+.+. ....++.++. ..++ +..+.++.+|+++|.+ ..++++++. ||.
T Consensus 188 EId~a~p~----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv- 254 (383)
T PHA02244 188 EIDASIPE----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA- 254 (383)
T ss_pred CcCcCCHH----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-
Confidence 99987532 1222233332 1112 2345689999999983 467999999 996
Q ss_pred eEEecCCCHHHHHHHH
Q 004550 394 QVEISLPDENGRLQIL 409 (745)
Q Consensus 394 ~i~i~~Pd~~~r~~Il 409 (745)
.|+++.|++.+ ..|.
T Consensus 255 ~I~~dyp~~~E-~~i~ 269 (383)
T PHA02244 255 PIEFDYDEKIE-HLIS 269 (383)
T ss_pred EeeCCCCcHHH-HHHh
Confidence 69999998433 3444
No 295
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=2.4e-09 Score=119.38 Aligned_cols=175 Identities=22% Similarity=0.282 Sum_probs=116.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccc
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 332 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEi 332 (745)
++.|-+||+||||-||||||+.+|+.. |..++.+|+++- .+...+++....|-......+..+.|..|+||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-CceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 445668999999999999999999997 788889998864 3455677777777766666666678999999999
Q ss_pred hhhhhcCCCCCCCCcchhHHHHHHHHhcc-------CccC---------CC---cEEEEEEeCCCCCCChhhhCCCCccc
Q 004550 333 DAICKSRGSTRDGTGVHDSIVNQLLTKID-------GVES---------LN---NVLLIGMTNRKDMLDEALLRPGRLEV 393 (745)
Q Consensus 333 d~l~~~~~~~~~~~~~~~~~~~~LL~~~d-------~~~~---------~~---~v~vI~~tn~~~~id~al~r~gRf~~ 393 (745)
|-- ....++.++..+. |-.. +. .--||+.||.. --|+|+.---|..
T Consensus 397 DGa-------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 397 DGA-------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAE 461 (877)
T ss_pred cCC-------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceE
Confidence 932 2334444444443 1111 00 13578888854 4688874446888
Q ss_pred eEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004550 394 QVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 394 ~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 456 (745)
.|.|.+|...-..+=|+..+.+-.. -.+-..+..|++.+.+ ||+.++..-...+.+
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~m---r~d~~aL~~L~el~~~----DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHRENM---RADSKALNALCELTQN----DIRSCINTLQFLASN 517 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhcC---CCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHh
Confidence 8999999887666666654432220 1222335555555554 888877776655543
No 296
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.07 E-value=1.5e-09 Score=122.70 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=106.9
Q ss_pred ceeeeeccCCCCChhHHHHHHHhh-----------CCCCeEEEecccc--------ccccchhhHHHH----HHHHHHHH
Q 004550 535 LVTCLLEGPSGSGKTALAATAGID-----------SDFPFVKIISAES--------MIGLHESTKCAQ----IVKVFEDA 591 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~-----------~~~~~i~v~~~~~--------l~g~~~~~~~~~----i~~~f~~a 591 (745)
..++|++|++||||+++|+++... .+.||+.++|... ++|+.++..... -..+|+.|
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc
Confidence 467999999999999999999876 4679999998753 234332211111 11345554
Q ss_pred hcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC--CCCccccc----
Q 004550 592 YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGIC---- 657 (745)
Q Consensus 592 ~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~--~l~~~~l~---- 657 (745)
. .+.||||||+.|. ..++..|+..|+.-. +...++-+|++||..- ....-.++
T Consensus 322 ~---gGTLfLdeI~~Lp----------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 322 H---GGTLFLDEIGEMP----------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLF 388 (538)
T ss_pred C---CCEEEEcChHhCC----------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHH
Confidence 3 3679999999974 556777777775421 1112467888887652 12221121
Q ss_pred ccc-ceEEEcCCCC--HHHHHHHHHHc--------c-CCCHHHH-------HHHHHHCCCCcHHHHHHHHHHHHccc
Q 004550 658 DAF-SVTYHVPTLK--TDDAKKVLKQL--------N-VFAEEDV-------DSASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 658 ~rf-~~~i~~p~~~--~~~~~~Il~~~--------~-~~~~~d~-------~~~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
.|+ ...|++||+. .+|+..+++.+ + .++++-+ ..+...-++|++|+|.++++++....
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 233 2568999998 67887777653 1 2333322 23334445999999999999987653
No 297
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=4.2e-09 Score=110.51 Aligned_cols=191 Identities=15% Similarity=0.212 Sum_probs=112.5
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCC-CCeEE--Eecccc----c-------cccch-h-hHH---HHHHHHH-HHHhcC
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSD-FPFVK--IISAES----M-------IGLHE-S-TKC---AQIVKVF-EDAYKS 594 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~-~~~i~--v~~~~~----l-------~g~~~-~-~~~---~~i~~~f-~~a~~~ 594 (745)
...++|+||+|+|||++++.++.... ..+.. +..+.. + .|... + .+. ..+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 44689999999999999999998764 22221 111110 0 12111 1 111 1222222 223345
Q ss_pred CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcE--EEEEecCCCCCCCc---cccccccceEEEcCCC
Q 004550 595 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKL--LVIGTTSEVSFLDS---VGICDAFSVTYHVPTL 669 (745)
Q Consensus 595 ~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v--~vI~ttn~~~~l~~---~~l~~rf~~~i~~p~~ 669 (745)
.+.+|+|||++.+. ...+..|..+.+........+ +++|.+...+.+.. ..+.+|+...++++++
T Consensus 123 ~~~vliiDe~~~l~----------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 123 KRALLVVDEAQNLT----------PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCeEEEEECcccCC----------HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 66899999999873 223344433333222222222 33333322222322 1355788889999999
Q ss_pred CHHHHHHHHHHc----c-----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 670 KTDDAKKVLKQL----N-----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 670 ~~~~~~~Il~~~----~-----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+.+|+.+++... + .+++ +..+.+...++|..+.+-.++..+...+-. .+...|+.+++.++++
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~-~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~-------~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSE-GAFDAIHRFSRGIPRLINILCDRLLLSAFL-------EEKREIGGEEVREVIA 264 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCH-HHHHHHHHHcCCcccHHHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHH
Confidence 999999988752 1 3444 555666667777788888888777665422 3557899999999998
Q ss_pred HHh
Q 004550 741 DMV 743 (745)
Q Consensus 741 ~~~ 743 (745)
++.
T Consensus 265 ~~~ 267 (269)
T TIGR03015 265 EID 267 (269)
T ss_pred Hhh
Confidence 863
No 298
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=8.9e-11 Score=110.18 Aligned_cols=116 Identities=28% Similarity=0.446 Sum_probs=66.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh--hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchh
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 334 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~--~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 334 (745)
+|||+||||||||++|+.+|+.+ +.++..++++.... ...|...-. ...+.. ...+.......++|++|||++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~--~~~~l~~a~~~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPS-NGQFEF--KDGPLVRAMRKGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET--TTTTCE--EE-CCCTTHHEEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeec-cccccc--ccccccccccceeEEEECCccc
Confidence 58999999999999999999999 56666776655332 111110000 000000 0000000001367999999997
Q ss_pred hhhcCCCCCCCCcchhHHHHHHHHhccCc-----------cCCC------cEEEEEEeCCCC----CCChhhhCCCCc
Q 004550 335 ICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLN------NVLLIGMTNRKD----MLDEALLRPGRL 391 (745)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~------~v~vI~~tn~~~----~id~al~r~gRf 391 (745)
.. ..++..|+..++.- .... ++.+|+++|+.+ .+++++++ ||
T Consensus 77 a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 77 AP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred CC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 63 33444454444421 1111 489999999988 89999999 87
No 299
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=2.3e-09 Score=100.48 Aligned_cols=124 Identities=27% Similarity=0.421 Sum_probs=78.2
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHH--HHHHHHHHhcCCCeEEEEeccchhh
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQ--IVKVFEDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~--i~~~f~~a~~~~~~il~lDEid~l~ 608 (745)
...+++++||||||||++++.++... +.+++.+...+............. ....+..+....+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999887 788887766553221111111000 1112233445567999999999872
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcCCCC---CCcEEEEEecCCCCC--CCccccccccceEEEcCC
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRLPPK---GKKLLVIGTTSEVSF--LDSVGICDAFSVTYHVPT 668 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~~~~---~~~v~vI~ttn~~~~--l~~~~l~~rf~~~i~~p~ 668 (745)
......++..+...... ..++.+|+++|.... +++ .+.+||+.++.+|+
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~-~~~~r~~~~i~~~~ 151 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR-ALYDRLDIRIVIPL 151 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh-hHHhhhccEeecCC
Confidence 22233444444443221 356788888887763 333 56689988888874
No 300
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.05 E-value=3.7e-09 Score=125.21 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=120.6
Q ss_pred ceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------cc
Q 004550 505 GMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MI 573 (745)
Q Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~ 573 (745)
.+++....+..+.+.+..+. ....++|++|++|||||++|++++..+ +.+|+.++|... ++
T Consensus 377 ~liG~S~~~~~~~~~~~~~a--------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA--------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh--------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 35555554444444443322 234579999999999999999998754 679999988753 12
Q ss_pred ccchhhH---HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEE
Q 004550 574 GLHESTK---CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVI 642 (745)
Q Consensus 574 g~~~~~~---~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI 642 (745)
|...+.. ...-...|+.|. .+.||||||+.|. ..++..|+..++.-. ....++.+|
T Consensus 449 g~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 515 (686)
T PRK15429 449 GHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP----------LELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 515 (686)
T ss_pred CcccccccccccchhhHHHhcC---CCeEEEechhhCC----------HHHHHHHHHHHHhCCEEeCCCCCcccceEEEE
Confidence 2111100 001112344433 4789999999974 556777777775421 112367888
Q ss_pred EecCCCC--CCCccccc----cccc-eEEEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHHCCCCcH
Q 004550 643 GTTSEVS--FLDSVGIC----DAFS-VTYHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPI 701 (745)
Q Consensus 643 ~ttn~~~--~l~~~~l~----~rf~-~~i~~p~~~--~~~~~~Il~~~--------~----~~~~~d~~~~~~~~~~~~i 701 (745)
++|+..- ......++ .|+. ..|.+||+. .+|+..+++.+ + .++++-+..+...-++|++
T Consensus 516 ~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNv 595 (686)
T PRK15429 516 AATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNV 595 (686)
T ss_pred EeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcH
Confidence 8887642 22222222 2332 468999999 67877777642 1 3566666666666679999
Q ss_pred HHHHHHHHHHHccccC
Q 004550 702 KKLYMLIEMAAQGEQG 717 (745)
Q Consensus 702 r~ll~~l~~a~~~~~~ 717 (745)
|+|.++++.|...+..
T Consensus 596 rEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 596 RELENVIERAVLLTRG 611 (686)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999876543
No 301
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.1e-09 Score=114.68 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=138.0
Q ss_pred ceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhh----CCC-CeEEEecccc------c-
Q 004550 505 GMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID----SDF-PFVKIISAES------M- 572 (745)
Q Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~----~~~-~~i~v~~~~~------l- 572 (745)
++.........+.++.....+. ..++++++.|-||+|||.+...+-.. +.. ..+.+++.+. |
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3444434444555555554443 56788999999999999988765422 222 3466666542 1
Q ss_pred --ccc------chhhHHHHHHHHHHHHh-cC-CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEE
Q 004550 573 --IGL------HESTKCAQIVKVFEDAY-KS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVI 642 (745)
Q Consensus 573 --~g~------~~~~~~~~i~~~f~~a~-~~-~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI 642 (745)
.+. +.+ ...+..+.|..-. +. .+-++++||+|.|... -.+.|.++..+..-.+.++++|
T Consensus 225 kI~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr----------~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR----------SQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhc----------ccceeeeehhcccCCcceeeee
Confidence 111 111 1123344444432 22 4679999999999722 2234555555544456789999
Q ss_pred EecCCCCCCCccccc-----cccceEEEcCCCCHHHHHHHHHHc------cCCCHHHHHHHHHHCC--CCcHHHHHHHHH
Q 004550 643 GTTSEVSFLDSVGIC-----DAFSVTYHVPTLKTDDAKKVLKQL------NVFAEEDVDSASEALN--DMPIKKLYMLIE 709 (745)
Q Consensus 643 ~ttn~~~~l~~~~l~-----~rf~~~i~~p~~~~~~~~~Il~~~------~~~~~~d~~~~~~~~~--~~~ir~ll~~l~ 709 (745)
|..|..|+-|....+ ..-...+.||||+.+|+.+|+++. ..+.+..+.-++.+.+ .||+|+++.+++
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 999999987765433 334578999999999999999973 2344445555555555 999999999999
Q ss_pred HHHccccCC--chh-------hcccCCCCccHhHHHHHHHHHh
Q 004550 710 MAAQGEQGG--AAE-------AIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 710 ~a~~~~~~~--~~~-------~~~~~~~~I~~~~~~~al~~~~ 743 (745)
.|.+.++.. ... ...++...|-.+|+..++.++.
T Consensus 374 ~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~ 416 (529)
T KOG2227|consen 374 RAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVD 416 (529)
T ss_pred HHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhc
Confidence 886655421 110 0012224566888888887654
No 302
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.05 E-value=2.3e-09 Score=121.38 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=109.2
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhHHH----HHHHHHHHHhcCCCeEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCA----QIVKVFEDAYKSPLSII 599 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~~~----~i~~~f~~a~~~~~~il 599 (745)
..++|++|++||||+++|+++...+ +.||+.++|... ++|+.++.... .-..+|+.|. .+.|
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTL 311 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTL 311 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceE
Confidence 4679999999999999999998754 679999998643 23332221100 0123455443 3679
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC--CCCccccc----cccc-eEE
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSVGIC----DAFS-VTY 664 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~--~l~~~~l~----~rf~-~~i 664 (745)
|||||+.|. ..++..|+..|+.-. ....++-+|++|+..- .+....++ .|+. ..|
T Consensus 312 fLdeI~~Lp----------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I 381 (526)
T TIGR02329 312 FLDEIGEMP----------LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRI 381 (526)
T ss_pred EecChHhCC----------HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEE
Confidence 999999974 556777777775421 0112457888887642 22222222 3443 679
Q ss_pred EcCCCC--HHHHHHHHHHc--------c-CCCHHHHHH-------HHHHCCCCcHHHHHHHHHHHHccc
Q 004550 665 HVPTLK--TDDAKKVLKQL--------N-VFAEEDVDS-------ASEALNDMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 665 ~~p~~~--~~~~~~Il~~~--------~-~~~~~d~~~-------~~~~~~~~~ir~ll~~l~~a~~~~ 715 (745)
++||+. .+|+..+++.+ . .++++.+.. +...-++|++|+|.++++++....
T Consensus 382 ~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 382 ALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred eCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 999999 67888777653 1 245544444 445555999999999999987653
No 303
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=2e-09 Score=115.66 Aligned_cols=192 Identities=18% Similarity=0.190 Sum_probs=123.5
Q ss_pred cceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhh----CCCCeEEEecccc--------
Q 004550 504 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID----SDFPFVKIISAES-------- 571 (745)
Q Consensus 504 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~----~~~~~i~v~~~~~-------- 571 (745)
..+++......++.++++.+ .....++|++|++||||+.+|+.|+.. .+.|||+++|...
T Consensus 78 ~~LIG~~~~~~~~~eqik~~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e 149 (403)
T COG1221 78 DDLIGESPSLQELREQIKAY--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE 149 (403)
T ss_pred hhhhccCHHHHHHHHHHHhh--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH
Confidence 34555555455554444331 133478999999999999999999743 4679999999864
Q ss_pred ccccchhh---HHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC-----CC---CCCcEE
Q 004550 572 MIGLHEST---KCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL-----PP---KGKKLL 640 (745)
Q Consensus 572 l~g~~~~~---~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~-----~~---~~~~v~ 640 (745)
++|+-.+. ....-..+|+.|.. +.||||||..|. -..+..|+..|+.- .. ....|.
T Consensus 150 LFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP----------~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 150 LFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLP----------PEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HhccccceeecccCCcCchheecCC---CEEehhhhhhCC----------HhHHHHHHHHHHcCceEecCCCCCcCCCce
Confidence 23322111 11122346666544 689999999985 45677777777762 11 234688
Q ss_pred EEEecCCC--CCCCc--cccccccceEEEcCCCC--HHHHHHHHHHc----------c--CCCHHHHHHHHHHCCCCcHH
Q 004550 641 VIGTTSEV--SFLDS--VGICDAFSVTYHVPTLK--TDDAKKVLKQL----------N--VFAEEDVDSASEALNDMPIK 702 (745)
Q Consensus 641 vI~ttn~~--~~l~~--~~l~~rf~~~i~~p~~~--~~~~~~Il~~~----------~--~~~~~d~~~~~~~~~~~~ir 702 (745)
+|+||+.. +.+-. ...++++...|.+||+. ..|+..+++.. . ...++-+..+.+...+|++|
T Consensus 217 li~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNir 296 (403)
T COG1221 217 LICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIR 296 (403)
T ss_pred eeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHH
Confidence 88888763 22222 23334778899999999 56666666542 1 22333344455555599999
Q ss_pred HHHHHHHHHHcccc
Q 004550 703 KLYMLIEMAAQGEQ 716 (745)
Q Consensus 703 ~ll~~l~~a~~~~~ 716 (745)
+|.++++.+...+.
T Consensus 297 ELkN~Ve~~~~~~~ 310 (403)
T COG1221 297 ELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 304
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=7.2e-09 Score=112.41 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=106.7
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------e------EEE-------------eccccc-ccc--chh-----
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------F------VKI-------------ISAESM-IGL--HES----- 578 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~------i~v-------------~~~~~l-~g~--~~~----- 578 (745)
+.+..+||+||+|+||+++|.++|+..-+. + +.+ ..|+.+ +.. .+.
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 445669999999999999999999754210 0 000 011111 100 011
Q ss_pred --hHHHHHHHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC
Q 004550 579 --TKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLD 652 (745)
Q Consensus 579 --~~~~~i~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~ 652 (745)
-+.+.+|++-+.+. .+.+.|++|||+|.+. ....++|+..++..+. ..++|.+|+.++.+.
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~----------~~aanaLLK~LEepp~---~~~~IL~t~~~~~ll 185 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN----------ANAANALLKVLEEPPA---RSLFLLVSHAPARLL 185 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC----------HHHHHHHHHHHhcCCC---CeEEEEEECCchhch
Confidence 13566777776653 3567899999999873 5667778888876432 345555777777665
Q ss_pred ccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHHH
Q 004550 653 SVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIE 709 (745)
Q Consensus 653 ~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~ 709 (745)
+ .+++| +..+.|++++.+++.++|.+.....+++....+...++|+.+.++.+++
T Consensus 186 p-ti~SR-c~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 186 P-TIRSR-CRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred H-Hhhcc-ceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 5 33344 7899999999999999999865433333335667788999988887764
No 305
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.3e-08 Score=109.73 Aligned_cols=186 Identities=17% Similarity=0.223 Sum_probs=117.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC-----cEEE-
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME-----PKIV- 287 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~-----~~~v- 287 (745)
+-.|++ +-|.++..+.+ ..++..- +-+..+||+||+|+|||++|+.+|+.+.+.. ....
T Consensus 19 P~~~~~--l~Gh~~a~~~L-~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTR--LFGHEEAEAFL-AQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhh--ccCcHHHHHHH-HHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 456666 89999988888 6666443 2234699999999999999999999985521 0000
Q ss_pred ----ccc-----------hhh---hhc--------cchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCC
Q 004550 288 ----NGP-----------EVL---SKF--------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 341 (745)
Q Consensus 288 ----~~~-----------~l~---~~~--------~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~ 341 (745)
.|+ ++. ... ..-+...+|++-+..... +. .+...|++|||+|.+.
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~---~g~~rVviIDeAd~l~----- 154 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SG---DGNWRIVIIDPADDMN----- 154 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cc---cCCceEEEEEchhhcC-----
Confidence 111 110 000 001123344443333221 11 1234599999999984
Q ss_pred CCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCC
Q 004550 342 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 421 (745)
Q Consensus 342 ~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~ 421 (745)
....+.||..++.. ..+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++++.......
T Consensus 155 --------~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~---- 217 (351)
T PRK09112 155 --------RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG---- 217 (351)
T ss_pred --------HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC----
Confidence 33456688888753 3456666677888999999998 87 4899999999999999986321110
Q ss_pred CCCcccHHHHHHHcCCCCHH
Q 004550 422 LAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 422 l~~~~~l~~la~~t~g~sg~ 441 (745)
.++..+..+++.+.|-.+.
T Consensus 218 -~~~~~~~~i~~~s~G~pr~ 236 (351)
T PRK09112 218 -SDGEITEALLQRSKGSVRK 236 (351)
T ss_pred -CCHHHHHHHHHHcCCCHHH
Confidence 1233466777777764443
No 306
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=2.1e-09 Score=99.84 Aligned_cols=128 Identities=23% Similarity=0.223 Sum_probs=78.9
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCC---eEEEeccccccc-------------cchhhHHHHHHHHHHHHhcCCCeE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIG-------------LHESTKCAQIVKVFEDAYKSPLSI 598 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~---~i~v~~~~~l~g-------------~~~~~~~~~i~~~f~~a~~~~~~i 598 (745)
..+++|+||||||||++++.+|...... ++.+........ ..........+.++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999988775 555544332111 111234456778888898888899
Q ss_pred EEEeccchhhhcCCCCCcchHHHHHH--HHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCC
Q 004550 599 IILDDIERLLEYVPIGPRFSNIISQT--MLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 669 (745)
Q Consensus 599 l~lDEid~l~~~~~~g~~~~~~~~~~--Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~ 669 (745)
||+||++++.... ........ ....... .......+|+++|......+..++.|++..+.++.+
T Consensus 82 iiiDei~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE-----QEALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH-----HHHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999999986321 01100000 0000111 122356778888863334444555688888877654
No 307
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.8e-08 Score=109.30 Aligned_cols=184 Identities=20% Similarity=0.250 Sum_probs=118.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 286 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~------- 286 (745)
+-.+++ |-|.++.++.+ .+++... +.+..+||+||+|+||+++|.++|+.+.+.....
T Consensus 15 P~~~~~--iiGq~~~~~~L-~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 15 PRETTA--LFGHAAAEAAL-LDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCchhh--ccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 445667 88999988877 5655442 2334799999999999999999999884322100
Q ss_pred -----E--cc-----------chhhh--h---ccc------hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhh
Q 004550 287 -----V--NG-----------PEVLS--K---FVG------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK 337 (745)
Q Consensus 287 -----v--~~-----------~~l~~--~---~~g------~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~ 337 (745)
+ .| +++.. . ..+ -.-..+|++-+.+... ...+.+.|++|||+|.+.
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----~~~~~~kVviIDead~m~- 154 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----AAEGGWRVVIVDTADEMN- 154 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----cccCCCEEEEEechHhcC-
Confidence 0 01 11100 0 000 0123455555444322 223457799999999873
Q ss_pred cCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHcccc
Q 004550 338 SRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK 417 (745)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~ 417 (745)
....+.||..++. ...+.++|.+|+.++.+.+.+++ |+. .+.+++|+.++..+++......
T Consensus 155 ------------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~-- 215 (365)
T PRK07471 155 ------------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD-- 215 (365)
T ss_pred ------------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc--
Confidence 3456678887774 33567788899999999999988 765 7999999999999998765321
Q ss_pred ccCCCCCcccHHHHHHHcCCCCHH
Q 004550 418 ENSFLAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 418 ~~~~l~~~~~l~~la~~t~g~sg~ 441 (745)
..+..+..++..+.|-.+.
T Consensus 216 -----~~~~~~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 216 -----LPDDPRAALAALAEGSVGR 234 (365)
T ss_pred -----CCHHHHHHHHHHcCCCHHH
Confidence 1222235677777774443
No 308
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=8.3e-09 Score=110.64 Aligned_cols=181 Identities=14% Similarity=0.254 Sum_probs=118.3
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhh--
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-- 293 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~-- 293 (745)
+|++ |-|.++.++.+ +.++... ..+..+||+||+|+|||++|+++|+.+.+.... -+-+++.
T Consensus 2 ~~~~--i~g~~~~~~~l-~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~-~~h~D~~~~ 65 (313)
T PRK05564 2 SFHT--IIGHENIKNRI-KNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ-REYVDIIEF 65 (313)
T ss_pred Chhh--ccCcHHHHHHH-HHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCeEEe
Confidence 4777 88999988888 6665432 233468999999999999999999987432110 0011110
Q ss_pred hhccc--hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEE
Q 004550 294 SKFVG--ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 371 (745)
Q Consensus 294 ~~~~g--~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~v 371 (745)
..+.| -.-..++++.+.+.. .|.. +...|++||++|.+. ....+.||..++. ...++++
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~-~p~~---~~~kv~iI~~ad~m~-------------~~a~naLLK~LEe--pp~~t~~ 126 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNK-KPYE---GDKKVIIIYNSEKMT-------------EQAQNAFLKTIEE--PPKGVFI 126 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhc-Cccc---CCceEEEEechhhcC-------------HHHHHHHHHHhcC--CCCCeEE
Confidence 00011 123446666655433 2222 234599999999873 3456778888884 4456777
Q ss_pred EEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHH
Q 004550 372 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 372 I~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 441 (745)
|.+|+.++.+.|.+++ |.. .++++.|+.++....++...... ++..++.++..+.|-.+.
T Consensus 127 il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 127 ILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGK 186 (313)
T ss_pred EEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHH
Confidence 7777888999999998 764 89999999998888776554321 233466677777764443
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=9.6e-10 Score=106.49 Aligned_cols=114 Identities=23% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC----CeEEEeccccccccchhhHHHHHHHHHHHH----hcCCCeEEEEecc
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF----PFVKIISAESMIGLHESTKCAQIVKVFEDA----YKSPLSIIILDDI 604 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~----~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a----~~~~~~il~lDEi 604 (745)
+|..++||.||+|||||.+|+++|..... +++.+++.+.--+.. ....+.+++..+ ......|||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~---~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD---VESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH---CSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch---HHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 36688999999999999999999998885 899998776422100 011122222211 1112249999999
Q ss_pred chhhhcCCCCCcc-hHHHHHHHHHHHhcCC---CC-----CCcEEEEEecCCCC
Q 004550 605 ERLLEYVPIGPRF-SNIISQTMLVLLKRLP---PK-----GKKLLVIGTTSEVS 649 (745)
Q Consensus 605 d~l~~~~~~g~~~-~~~~~~~Ll~~l~~~~---~~-----~~~v~vI~ttn~~~ 649 (745)
|+++.....+... ...+++.|+..++.-. .. ..++++|+|+|--.
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9998753333333 3468889999887631 11 24788999998755
No 310
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.99 E-value=4.9e-09 Score=119.65 Aligned_cols=193 Identities=18% Similarity=0.162 Sum_probs=120.3
Q ss_pred cceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------c
Q 004550 504 NGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------M 572 (745)
Q Consensus 504 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l 572 (745)
.++++....+..+.+.+.... ....++||+|++||||+++|+++...+ +.||+.++|... +
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a--------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA--------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh--------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 345555554444444443321 234679999999999999999999764 579999988753 1
Q ss_pred cccchhhH---HHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEE
Q 004550 573 IGLHESTK---CAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLV 641 (745)
Q Consensus 573 ~g~~~~~~---~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~v 641 (745)
+|...+.. ...-...|..|. .+.|||||||.|. ..++..|+..++.-. ....++-+
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP----------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred cCccccccCCCcccCCcchhhcC---CCEEEecChhhCC----------HHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 22111000 000011344433 3679999999984 556667777775421 11235788
Q ss_pred EEecCCCC--CCCccc----cccccc-eEEEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCc
Q 004550 642 IGTTSEVS--FLDSVG----ICDAFS-VTYHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMP 700 (745)
Q Consensus 642 I~ttn~~~--~l~~~~----l~~rf~-~~i~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ 700 (745)
|++|+..- .+.... |..|+. ..|++||+. .+|+..+++.. ..++++-+..+...-++|+
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 405 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN 405 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence 88887652 111112 223443 558999999 67787776642 1355666666666666999
Q ss_pred HHHHHHHHHHHHccccC
Q 004550 701 IKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 701 ir~ll~~l~~a~~~~~~ 717 (745)
+|+|.++++.|...+..
T Consensus 406 vrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 406 VRELEHVISRAALLARA 422 (509)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999876543
No 311
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=3.9e-09 Score=113.99 Aligned_cols=139 Identities=24% Similarity=0.318 Sum_probs=88.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhh--ccchhHHHHH----HHHHHHHhhccccCCCCCeEEE
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKNIR----DLFADAENDQRTRGDQSDLHVI 327 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~--~~g~~e~~i~----~~f~~a~~~~~~~~~~~~p~Il 327 (745)
..+++||.||||||||++|+.+|+.++ .++..++|...+.. ..|...-..+ ..|... ..|-..... +|+
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~--~gpl~~~~~--~il 116 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFV--PGPLFAAVR--VIL 116 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEe--cCCcccccc--eEE
Confidence 346799999999999999999999994 77777777654432 2222211111 000000 011111111 399
Q ss_pred EEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC----------ccCCCcEEEEEEeCC-----CCCCChhhhCCCCcc
Q 004550 328 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG----------VESLNNVLLIGMTNR-----KDMLDEALLRPGRLE 392 (745)
Q Consensus 328 ~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~----------~~~~~~v~vI~~tn~-----~~~id~al~r~gRf~ 392 (745)
++|||+... ..+.+.||..|+. +.....+++|+|.|. ...+++++++ ||.
T Consensus 117 l~DEInra~-------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 117 LLDEINRAP-------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EEeccccCC-------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 999999864 3355566666654 344567899999894 4458999999 998
Q ss_pred ceEEecCCCH-HHHHHHHHHH
Q 004550 393 VQVEISLPDE-NGRLQILQIH 412 (745)
Q Consensus 393 ~~i~i~~Pd~-~~r~~Il~~~ 412 (745)
..+.++.|+. ++...++...
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEEecCCCCchHHHHHHHHhC
Confidence 8999999954 4444444433
No 312
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-08 Score=104.55 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=62.1
Q ss_pred EEEEccchhhhhcCCCCCCCCcch-hHHHHHHHHhccCc--------cCCCcEEEEEEe----CCCCCCChhhhCCCCcc
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLE 392 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~~-~~~~~~LL~~~d~~--------~~~~~v~vI~~t----n~~~~id~al~r~gRf~ 392 (745)
|+||||||.++.+.+.... ++. .-+...||-.++|. -....+++||+. ..|+++-|.|. |||+
T Consensus 253 IvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred eEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 9999999999987763221 333 34666788887763 234568999887 56888999995 5999
Q ss_pred ceEEecCCCHHHHHHHHH
Q 004550 393 VQVEISLPDENGRLQILQ 410 (745)
Q Consensus 393 ~~i~i~~Pd~~~r~~Il~ 410 (745)
..+++...+.++-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888874
No 313
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=4.8e-09 Score=110.04 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=115.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEE---Ecc----chhhh---hccc-----hh-HHHHHHHHHHHHhhccccCC
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNG----PEVLS---KFVG-----ET-EKNIRDLFADAENDQRTRGD 320 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~~~~~---v~~----~~l~~---~~~g-----~~-e~~i~~~f~~a~~~~~~~~~ 320 (745)
-++|+||+|+|||++++.+++.+....+.. ++. .+++. ...| .. ...++.+........ .
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~----~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF----A 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH----h
Confidence 488999999999999999999875322221 111 11111 1111 11 111222222111110 0
Q ss_pred CCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCC---CC----ChhhhCCCCccc
Q 004550 321 QSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD---ML----DEALLRPGRLEV 393 (745)
Q Consensus 321 ~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~---~i----d~al~r~gRf~~ 393 (745)
...+.+|+|||+|.+.+. ....+..+.+... .....+.|+.+ ..++ .+ ...+.+ |+..
T Consensus 121 ~~~~~vliiDe~~~l~~~----------~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPE----------LLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CCCCeEEEEECcccCCHH----------HHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heee
Confidence 112469999999987421 1122222322211 12222333333 2222 11 123555 7777
Q ss_pred eEEecCCCHHHHHHHHHHHHcccccc-CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccC
Q 004550 394 QVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEES 472 (745)
Q Consensus 394 ~i~i~~Pd~~~r~~Il~~~~~~~~~~-~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~ 472 (745)
.+++++.+.++..+++...++..... .....+..++.+++.+.|... .|..+|..+...|..+. .
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~-------------~ 251 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE-------------K 251 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC-------------C
Confidence 89999999999999999887654321 112344578899999999765 59999999988887642 2
Q ss_pred ceeehhhHHHHHHhhh
Q 004550 473 IKVTMDDFLHALYEIV 488 (745)
Q Consensus 473 ~~it~~df~~al~~~~ 488 (745)
..|+.+++..++.++.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 3589999999887754
No 314
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.98 E-value=3.8e-09 Score=98.17 Aligned_cols=127 Identities=28% Similarity=0.389 Sum_probs=81.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCC--CcEEEccchhhhh--------------ccchhHHHHHHHHHHHHhhcccc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGPEVLSK--------------FVGETEKNIRDLFADAENDQRTR 318 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~--~~~~v~~~~l~~~--------------~~g~~e~~i~~~f~~a~~~~~~~ 318 (745)
+..++|+||||||||++++.++..+... .++.+++...... .........+.+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK--- 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC---
Confidence 4579999999999999999999998655 3677776654332 12234556777788777654
Q ss_pred CCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHH--HHhccCccCCCcEEEEEEeCC-CCCCChhhhCCCCccceE
Q 004550 319 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL--LTKIDGVESLNNVLLIGMTNR-KDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 319 ~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~L--L~~~d~~~~~~~v~vI~~tn~-~~~id~al~r~gRf~~~i 395 (745)
+.+|+|||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++.++
T Consensus 79 -----~~viiiDei~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 142 (148)
T smart00382 79 -----PDVLILDEITSLLDAEQE---------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRI 142 (148)
T ss_pred -----CCEEEEECCcccCCHHHH---------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEE
Confidence 459999999998633211 000000 000111123356888999986 3344555555 888888
Q ss_pred EecCC
Q 004550 396 EISLP 400 (745)
Q Consensus 396 ~i~~P 400 (745)
.++.+
T Consensus 143 ~~~~~ 147 (148)
T smart00382 143 VLLLI 147 (148)
T ss_pred EecCC
Confidence 77654
No 315
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.97 E-value=1.5e-08 Score=115.67 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=117.1
Q ss_pred ceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------cc
Q 004550 505 GMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MI 573 (745)
Q Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~ 573 (745)
.++........+++.+.+... ....+||+|++||||+++|+++...+ +.||+.++|... ++
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~--------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM--------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC--------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc
Confidence 345544444445544443221 23559999999999999999997654 478999988753 12
Q ss_pred ccchhhHH---HHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--C------CCCcEEEE
Q 004550 574 GLHESTKC---AQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--P------KGKKLLVI 642 (745)
Q Consensus 574 g~~~~~~~---~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--~------~~~~v~vI 642 (745)
|+..+... +.-..+|+.|. .+.||||||+.|. ..++..|+.+++.-. . ...++.||
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI 343 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS----------PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 343 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC----------HHHHHHHHHHHhcCCcccCCCCcceeeeeEEE
Confidence 32111000 00112454443 3679999999984 556677777775421 1 12356788
Q ss_pred EecCCCC--CCCc----cccccccc-eEEEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHHCCCCcH
Q 004550 643 GTTSEVS--FLDS----VGICDAFS-VTYHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPI 701 (745)
Q Consensus 643 ~ttn~~~--~l~~----~~l~~rf~-~~i~~p~~~--~~~~~~Il~~~--------~----~~~~~d~~~~~~~~~~~~i 701 (745)
++|+.+- .... ..|..|+. ..|.+||+. .+|+..+++.+ + .++++-+..+...-++|++
T Consensus 344 ~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNv 423 (520)
T PRK10820 344 CATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNV 423 (520)
T ss_pred EecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHH
Confidence 8876642 1211 13334543 679999999 56776655531 1 3444444444455569999
Q ss_pred HHHHHHHHHHHccccC
Q 004550 702 KKLYMLIEMAAQGEQG 717 (745)
Q Consensus 702 r~ll~~l~~a~~~~~~ 717 (745)
|+|.+++++|...++.
T Consensus 424 reL~nvl~~a~~~~~~ 439 (520)
T PRK10820 424 RQLKNAIYRALTQLEG 439 (520)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999876543
No 316
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.97 E-value=2.6e-09 Score=114.23 Aligned_cols=130 Identities=12% Similarity=0.187 Sum_probs=85.7
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----------CCCCcEEEEEecCCCC-CCCccccccccceEE
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVS-FLDSVGICDAFSVTY 664 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vI~ttn~~~-~l~~~~l~~rf~~~i 664 (745)
..+||||||+++. ..+++.|+..|+.-. ....++++|+|+|..+ .+.+ .+..||...+
T Consensus 132 ~GvL~lDEi~~L~----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~-~LldRf~l~i 200 (337)
T TIGR02030 132 RGILYIDEVNLLE----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRP-QLLDRFGLHA 200 (337)
T ss_pred CCEEEecChHhCC----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCH-HHHhhcceEE
Confidence 4799999999973 567777777775421 1224688888887554 2333 5668999999
Q ss_pred EcCCCCH-HHHHHHHHHccCC---------------------------------CHHHHH----HHHHHCCCCcHHHHHH
Q 004550 665 HVPTLKT-DDAKKVLKQLNVF---------------------------------AEEDVD----SASEALNDMPIKKLYM 706 (745)
Q Consensus 665 ~~p~~~~-~~~~~Il~~~~~~---------------------------------~~~d~~----~~~~~~~~~~ir~ll~ 706 (745)
.++.++. +++.+|+++...+ .++++. .++.....-+.|..+.
T Consensus 201 ~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~ 280 (337)
T TIGR02030 201 EIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELT 280 (337)
T ss_pred ECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHH
Confidence 9999984 7777777762111 112222 2222222225677777
Q ss_pred HHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 707 LIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 707 ~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
+++.|+..|- .+|+..|+.+|+..+..-++
T Consensus 281 l~raArA~Aa-------l~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 281 LNRAAKALAA-------FEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred HHHHHHHHHH-------HcCCCCCCHHHHHHHHHHHH
Confidence 7777776653 46899999999999887664
No 317
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.96 E-value=8.6e-09 Score=111.17 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=98.8
Q ss_pred eeeeccCCCCChhHHHHHHHhhCC------------------------CCeEEEeccccccccchhhHHHHHHHHHHHHh
Q 004550 537 TCLLEGPSGSGKTALAATAGIDSD------------------------FPFVKIISAESMIGLHESTKCAQIVKVFEDAY 592 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~~------------------------~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~ 592 (745)
.+||+||||+|||++|.++|+... ..++.++.++. .+.. -..+.++++-+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~-~~~~--i~~~~vr~~~~~~~ 102 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL-RKID--IIVEQVRELAEFLS 102 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc-CCCc--chHHHHHHHHHHhc
Confidence 599999999999999999998765 34555543332 1111 12334555555443
Q ss_pred c----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCC
Q 004550 593 K----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 668 (745)
Q Consensus 593 ~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~ 668 (745)
. .+..|++|||+|.+. ....++|+..++.. ..+..+|.+||.+..+-+ .+++ .+..++|++
T Consensus 103 ~~~~~~~~kviiidead~mt----------~~A~nallk~lEep---~~~~~~il~~n~~~~il~-tI~S-Rc~~i~f~~ 167 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLT----------EDAANALLKTLEEP---PKNTRFILITNDPSKILP-TIRS-RCQRIRFKP 167 (325)
T ss_pred cCCCCCCceEEEeCcHHHHh----------HHHHHHHHHHhccC---CCCeEEEEEcCChhhccc-hhhh-cceeeecCC
Confidence 3 457899999999985 34556666666543 345677778887776666 3434 478999988
Q ss_pred CCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcc
Q 004550 669 LKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 669 ~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~ 714 (745)
++.. ..|+... ++....+...+.|++|..++.++..+..
T Consensus 168 ~~~~--~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 168 PSRL--EAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred chHH--HHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 5433 3344332 3333444445677888888887777665
No 318
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=8.6e-09 Score=120.25 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=95.5
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--------------
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG-------------- 281 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~-------------- 281 (745)
.|.+ |.|.+..+..+. .+...+ ...||||+||||||||++||++++.+..
T Consensus 2 pf~~--ivGq~~~~~al~-~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~ 65 (633)
T TIGR02442 2 PFTA--IVGQEDLKLALL-LNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPD 65 (633)
T ss_pred Ccch--hcChHHHHHHHH-HHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCC
Confidence 4666 899988776663 222221 1246999999999999999999998731
Q ss_pred --------------------CCcEEEccchhhhhccchhHHHHHHHHHHHH-hhccccCCCCCeEEEEEccchhhhhcCC
Q 004550 282 --------------------MEPKIVNGPEVLSKFVGETEKNIRDLFADAE-NDQRTRGDQSDLHVIIFDEIDAICKSRG 340 (745)
Q Consensus 282 --------------------~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~-~~~~~~~~~~~p~Il~iDEid~l~~~~~ 340 (745)
.++..+.+.......+|.. .+...+.... ...+..-....-.||||||++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~---- 139 (633)
T TIGR02442 66 DPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD---- 139 (633)
T ss_pred CccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC----
Confidence 1222222211111112211 0111110000 000000000111399999999984
Q ss_pred CCCCCCcchhHHHHHHHHhccCc-----------cCCCcEEEEEEeCCCC-CCChhhhCCCCccceEEecCCC-HHHHHH
Q 004550 341 STRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD-ENGRLQ 407 (745)
Q Consensus 341 ~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~Pd-~~~r~~ 407 (745)
..+++.|+..|+.- ....++.+|+++|..+ .+.++|+. ||..+|.++.|. .+++.+
T Consensus 140 ---------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~ 208 (633)
T TIGR02442 140 ---------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVE 208 (633)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHH
Confidence 34556666666421 1124689999998643 58899998 999999998774 577888
Q ss_pred HHHHH
Q 004550 408 ILQIH 412 (745)
Q Consensus 408 Il~~~ 412 (745)
|++..
T Consensus 209 il~~~ 213 (633)
T TIGR02442 209 IIRRR 213 (633)
T ss_pred HHHHH
Confidence 88754
No 319
>PHA02244 ATPase-like protein
Probab=98.96 E-value=2.9e-08 Score=105.42 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=91.5
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccc---cccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE---SMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVP 612 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~---~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~ 612 (745)
.++||+||||||||++|+++|...+.+|+.++... .+.|...... .....-|-.|.+ ...+|+|||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g-~~~dgpLl~A~~-~GgvLiLDEId~a~---- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANG-KFHETPFYEAFK-KGGLFFIDEIDASI---- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccc-cccchHHHHHhh-cCCEEEEeCcCcCC----
Confidence 46999999999999999999999999999986321 1233211110 011112333333 34799999999864
Q ss_pred CCCcchHHHHHHHHHHHhcC-----C---CCCCcEEEEEecCCCC-----------CCCccccccccceEEEcCCCCHHH
Q 004550 613 IGPRFSNIISQTMLVLLKRL-----P---PKGKKLLVIGTTSEVS-----------FLDSVGICDAFSVTYHVPTLKTDD 673 (745)
Q Consensus 613 ~g~~~~~~~~~~Ll~~l~~~-----~---~~~~~v~vI~ttn~~~-----------~l~~~~l~~rf~~~i~~p~~~~~~ 673 (745)
..++..|...++.- . ....++.+|+|+|.+. .+++ .+.+||. .++|..|+..|
T Consensus 194 ------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~-AllDRFv-~I~~dyp~~~E 265 (383)
T PHA02244 194 ------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDG-ATLDRFA-PIEFDYDEKIE 265 (383)
T ss_pred ------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCH-HHHhhcE-EeeCCCCcHHH
Confidence 34444555555321 0 1124678999999742 2233 4558996 68898887444
Q ss_pred HHHHHHHccCCCHHHHHHHHHHC---------C-CCcHHHHHHHHHH
Q 004550 674 AKKVLKQLNVFAEEDVDSASEAL---------N-DMPIKKLYMLIEM 710 (745)
Q Consensus 674 ~~~Il~~~~~~~~~d~~~~~~~~---------~-~~~ir~ll~~l~~ 710 (745)
. .|... ...+..++..+ . ..+.|.++...+.
T Consensus 266 ~-~i~~~-----~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~~ 306 (383)
T PHA02244 266 H-LISNG-----DEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKKF 306 (383)
T ss_pred H-HHhhh-----HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Confidence 3 22221 23333322221 1 6778877766554
No 320
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=4e-08 Score=101.43 Aligned_cols=129 Identities=19% Similarity=0.114 Sum_probs=85.0
Q ss_pred CeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCC------------CCCCChhhhCCCC
Q 004550 323 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR------------KDMLDEALLRPGR 390 (745)
Q Consensus 323 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~------------~~~id~al~r~gR 390 (745)
-|.||||||+|.|- -+.+.-|-..|+. .-.-++|.+||+ |.-|+..|+. |
T Consensus 291 VpGVLFIDEvHmLD-------------IE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 291 VPGVLFIDEVHMLD-------------IECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred ecceEEEechhhhh-------------HHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 35599999999872 1222223333331 122366677776 3446777776 6
Q ss_pred ccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 004550 391 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDE 470 (745)
Q Consensus 391 f~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~ 470 (745)
+- .|...+++.++..+|+++..+.-. ...++..++.|+.....-|-+.-.+|+.-|...|.+|.
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~---i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg------------ 416 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEED---IELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG------------ 416 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhc---cccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC------------
Confidence 54 567778899999999999876433 23455568888888877777777778887877777653
Q ss_pred cCceeehhhHHHHHHh
Q 004550 471 ESIKVTMDDFLHALYE 486 (745)
Q Consensus 471 ~~~~it~~df~~al~~ 486 (745)
...+..+|+..+-+-
T Consensus 417 -~~~V~~~dVe~a~~l 431 (450)
T COG1224 417 -SKRVEVEDVERAKEL 431 (450)
T ss_pred -CCeeehhHHHHHHHH
Confidence 235777787776543
No 321
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-08 Score=106.88 Aligned_cols=181 Identities=24% Similarity=0.308 Sum_probs=120.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhh-HHHHHHHHHHHHh----cCCCeEEEEeccchhhhc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHEST-KCAQIVKVFEDAY----KSPLSIIILDDIERLLEY 610 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~-~~~~i~~~f~~a~----~~~~~il~lDEid~l~~~ 610 (745)
.++||.||+|+|||.+|+.+|+..+.||.-.++..+--.-|.++ -+.-|.+++..|. +....|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999998887766432222222 3345777777763 445689999999999844
Q ss_pred CC-CC-C-cc-hHHHHHHHHHHHhcC----CCC--------------CCcEEEEEec--CCCC-----------------
Q 004550 611 VP-IG-P-RF-SNIISQTMLVLLKRL----PPK--------------GKKLLVIGTT--SEVS----------------- 649 (745)
Q Consensus 611 ~~-~g-~-~~-~~~~~~~Ll~~l~~~----~~~--------------~~~v~vI~tt--n~~~----------------- 649 (745)
.+ ++ . .+ .+-++|+||.++++. +.. ..++++|+.- +..+
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 32 11 1 12 356999999999873 111 1134555321 0000
Q ss_pred ------------------------CCC---cc---------ccccccceEEEcCCCCHHHHHHHHHHc------------
Q 004550 650 ------------------------FLD---SV---------GICDAFSVTYHVPTLKTDDAKKVLKQL------------ 681 (745)
Q Consensus 650 ------------------------~l~---~~---------~l~~rf~~~i~~p~~~~~~~~~Il~~~------------ 681 (745)
+|+ +. .+.+||..++.|..++++++..||..-
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 000 00 134999999999999999999999851
Q ss_pred ------cCCCHHHHHHHHHHCC--CCcHHHHHHHHHHHHcccc
Q 004550 682 ------NVFAEEDVDSASEALN--DMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 682 ------~~~~~~d~~~~~~~~~--~~~ir~ll~~l~~a~~~~~ 716 (745)
..|++..+..+.+..- +-++|-|..++|.+-..+.
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleam 509 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAM 509 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhc
Confidence 1456665555544332 6678888888888766554
No 322
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.94 E-value=1.7e-08 Score=116.63 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=64.9
Q ss_pred cEEEEEEeCCC--CCCChhhhCCCCcc---ceEEecC--C-CHHHHHHHHHHHHccccccCCC--CCcccHHHHHH----
Q 004550 368 NVLLIGMTNRK--DMLDEALLRPGRLE---VQVEISL--P-DENGRLQILQIHTNKMKENSFL--APDVNLQELAA---- 433 (745)
Q Consensus 368 ~v~vI~~tn~~--~~id~al~r~gRf~---~~i~i~~--P-d~~~r~~Il~~~~~~~~~~~~l--~~~~~l~~la~---- 433 (745)
++.+|+++|+. ..++|.|+. ||. ..++++. | +.+.+.++.+...+.+..++.+ .++..+.++.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999874 568999998 888 6666643 4 4556666655444333322111 12222333332
Q ss_pred HcC-----CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCceeehhhHHHHHHhhh
Q 004550 434 RTK-----NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 488 (745)
Q Consensus 434 ~t~-----g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 488 (745)
.+. -.+.++|.++++.|...|..+ ....|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-------------~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-------------GKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-------------CCceecHHHHHHHHHHHH
Confidence 111 134689999999996555432 235799999999887653
No 323
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.4e-08 Score=108.62 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=106.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------Eccchhhh--h-c--cchhHHHHHHHHHHHHh
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLS--K-F--VGETEKNIRDLFADAEN 313 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~--~-~--~g~~e~~i~~~f~~a~~ 313 (745)
.+..+||+||+|+|||++|+++|+.+.+..... -+-+++.. . . ..-.-..+|++.+.+..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 455799999999999999999999985421100 00011110 0 0 01134567777666554
Q ss_pred hccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccc
Q 004550 314 DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEV 393 (745)
Q Consensus 314 ~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~ 393 (745)
.. . .+...|++||++|.+. ....|.||..++. ...++++|.+|+.++.+.|.+++ |+.
T Consensus 101 ~~-~---~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 101 TA-Q---LGGRKVVLIEPAEAMN-------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred cc-c---cCCCeEEEECChhhCC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 32 1 1234599999999984 4466778888885 34688999999999999999999 876
Q ss_pred eEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHH
Q 004550 394 QVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 441 (745)
Q Consensus 394 ~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 441 (745)
.+.|++|+.++..+.|+..... ..+.+...++..+.|-.+.
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPLR 199 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHHH
Confidence 5899999999888888754321 1233455667777775443
No 324
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.6e-08 Score=106.04 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=121.0
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCc---------EE
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP---------KI 286 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~---------~~ 286 (745)
.|++ |-|.+..++.+ ++++...-. +..+||+||+|+||+++|+++|+.+.+... ..
T Consensus 2 ~f~~--iiGq~~~~~~L-~~~i~~~rl------------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFAN--LIGQPLAIELL-TAAIKQNRI------------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHH--hCCHHHHHHHH-HHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 4677 99999988877 666654422 347999999999999999999998743320 01
Q ss_pred Eccchhhhh-----ccch--------------------hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCC
Q 004550 287 VNGPEVLSK-----FVGE--------------------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 341 (745)
Q Consensus 287 v~~~~l~~~-----~~g~--------------------~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~ 341 (745)
.+-|++.-- ..|. .-..+|++.+.+... |. .+...|++||++|.+.
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~-p~---~~~~kVvII~~ae~m~----- 137 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP-PL---EAPRKVVVIEDAETMN----- 137 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccC-cc---cCCceEEEEEchhhcC-----
Confidence 122222200 0011 112456665544432 22 2234699999999884
Q ss_pred CCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCC
Q 004550 342 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 421 (745)
Q Consensus 342 ~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~ 421 (745)
....+.||..++... +.++|..|+.++.+-|.+++ |.. .+.|+.|+.++..++|+.....-
T Consensus 138 --------~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~----- 198 (314)
T PRK07399 138 --------EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEE----- 198 (314)
T ss_pred --------HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccc-----
Confidence 345677888888643 44677788899999999999 764 79999999999999988653211
Q ss_pred CCCcccHHHHHHHcCCCCHHHHH
Q 004550 422 LAPDVNLQELAARTKNYSGAELE 444 (745)
Q Consensus 422 l~~~~~l~~la~~t~g~sg~dl~ 444 (745)
..+.++..++....|-.+.-+.
T Consensus 199 -~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 199 -ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred -cchhHHHHHHHHcCCCHHHHHH
Confidence 1122356788888875554443
No 325
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=2.9e-09 Score=103.11 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcC---CCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNG---MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~---~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
|...+||.||+|||||.+|+++|+.+.. .++..++++++... ++.+..+..++..+....... ...|||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~----~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAE----EGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHH----HHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeecc----chhhhhhH
Confidence 4457999999999999999999999951 36778888887661 111112222222111000000 01199999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCc---------cCCCcEEEEEEeCCCC
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------ESLNNVLLIGMTNRKD 379 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~---------~~~~~v~vI~~tn~~~ 379 (745)
|||.+.++..... ......+++.||..+|+- -...++++|+|+|--.
T Consensus 76 EidKa~~~~~~~~--~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGGA--DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTCS--HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHhhccccccccc--hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999987622111 122346777888877632 1235799999998754
No 326
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.92 E-value=3.6e-08 Score=105.41 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=84.2
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC----C------CCCCcEEEEEecCCCCCCCccccccccceEEE
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL----P------PKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 665 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~----~------~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~ 665 (745)
..+||+|||+++. ..+++.|+..|+.- . ....++++|+|.|..+.--+..+..||...+.
T Consensus 145 ~GiL~lDEInrL~----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~ 214 (350)
T CHL00081 145 RGILYVDEVNLLD----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAE 214 (350)
T ss_pred CCEEEecChHhCC----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceee
Confidence 4799999999974 55677777776531 0 12347888888886552223356689999999
Q ss_pred cCCCC-HHHHHHHHHHccCC-----------------CHHHHHHHHH--------------------HCCCCcHHHHHHH
Q 004550 666 VPTLK-TDDAKKVLKQLNVF-----------------AEEDVDSASE--------------------ALNDMPIKKLYML 707 (745)
Q Consensus 666 ~p~~~-~~~~~~Il~~~~~~-----------------~~~d~~~~~~--------------------~~~~~~ir~ll~~ 707 (745)
+..++ .++..+|+++...+ ..+++..+-. ....-+.|-.+.+
T Consensus 215 l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l 294 (350)
T CHL00081 215 IRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVT 294 (350)
T ss_pred cCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHH
Confidence 99888 57778888763211 1122222221 1112345666666
Q ss_pred HHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 708 IEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 708 l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
++.|+..| ..+|+..|+.+|+..+..-++
T Consensus 295 ~raArA~A-------al~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 295 NRAAKALA-------AFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred HHHHHHHH-------HHcCCCCCCHHHHHHHHHHHH
Confidence 66665554 346899999999999987664
No 327
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2e-08 Score=107.73 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=105.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------e---------EEEeccccccccch----hhHHHHHHHHHHHHh
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------F---------VKIISAESMIGLHE----STKCAQIVKVFEDAY 592 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~---------i~v~~~~~l~g~~~----~~~~~~i~~~f~~a~ 592 (745)
+.+..+||+||+|+||+++|.++|...-+. + ..-+.|+...=..+ .-+.+.+|++-+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 556788999999999999999998654220 0 00111221110011 124567777776654
Q ss_pred ----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCC
Q 004550 593 ----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 668 (745)
Q Consensus 593 ----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~ 668 (745)
.+...|++||++|++. ....++|+..|+..++ +.++|-+|+.++.+-+ -+++| +..+.|++
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~t~fiL~t~~~~~lLp-TIrSR-Cq~~~~~~ 166 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT----------DAAANALLKTLEEPPE---NTWFFLACREPARLLA-TLRSR-CRLHYLAP 166 (334)
T ss_pred hccccCCceEEEEcchHhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhChH-HHHhc-cccccCCC
Confidence 4566799999999974 5667788888876433 5566667777776666 34455 66899999
Q ss_pred CCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHH
Q 004550 669 LKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 669 ~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l 708 (745)
++.+++.+.|.+.....++++ ..+...++|+..+++.++
T Consensus 167 ~~~~~~~~~L~~~~~~~~~~a-~~~~~la~G~~~~Al~l~ 205 (334)
T PRK07993 167 PPEQYALTWLSREVTMSQDAL-LAALRLSAGAPGAALALL 205 (334)
T ss_pred CCHHHHHHHHHHccCCCHHHH-HHHHHHcCCCHHHHHHHh
Confidence 999999998876545555554 344556677776665553
No 328
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.9e-08 Score=108.28 Aligned_cols=157 Identities=16% Similarity=0.097 Sum_probs=96.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCe----------------EEEecccccccc--chhhHHHHHHHHHHHHh--
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPF----------------VKIISAESMIGL--HESTKCAQIVKVFEDAY-- 592 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~----------------i~v~~~~~l~g~--~~~~~~~~i~~~f~~a~-- 592 (745)
+.+..+||+||+|+|||++|+++|...-++- ..-+.|+...-. ...-+.+.++++.+.+.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC
Confidence 4556679999999999999999987642210 000011111000 11123456777766654
Q ss_pred --cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC
Q 004550 593 --KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 670 (745)
Q Consensus 593 --~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~ 670 (745)
.+...|++|||+|++. ....++|+..|+.+++ .+++|.+|+.+..+-+. +++| +..++|++++
T Consensus 106 ~~~~~~kvviI~~a~~~~----------~~a~NaLLK~LEEPp~---~~~~Il~t~~~~~ll~T-IrSR-c~~i~~~~~~ 170 (329)
T PRK08058 106 GVESNKKVYIIEHADKMT----------ASAANSLLKFLEEPSG---GTTAILLTENKHQILPT-ILSR-CQVVEFRPLP 170 (329)
T ss_pred CcccCceEEEeehHhhhC----------HHHHHHHHHHhcCCCC---CceEEEEeCChHhCcHH-HHhh-ceeeeCCCCC
Confidence 2456799999999873 5577788888887533 33444466666555553 4444 7899999999
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHH
Q 004550 671 TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 707 (745)
Q Consensus 671 ~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~ 707 (745)
.+++.+.|+..+ ...++. .++.... |++.+++.+
T Consensus 171 ~~~~~~~L~~~g-i~~~~~-~~l~~~~-g~~~~A~~l 204 (329)
T PRK08058 171 PESLIQRLQEEG-ISESLA-TLLAGLT-NSVEEALAL 204 (329)
T ss_pred HHHHHHHHHHcC-CChHHH-HHHHHHc-CCHHHHHHH
Confidence 999999998764 444333 2333333 345554444
No 329
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=2.6e-10 Score=107.06 Aligned_cols=112 Identities=25% Similarity=0.353 Sum_probs=70.1
Q ss_pred eeeeccCCCCChhHHHHHHHhhCCCCeEEEecccc-----ccccchhh--HHHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 004550 537 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES-----MIGLHEST--KCAQIVKVFEDAYKSPLSIIILDDIERLLE 609 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~-----l~g~~~~~--~~~~i~~~f~~a~~~~~~il~lDEid~l~~ 609 (745)
++||+||||||||++|+.+|...+.+++.+..+.. ++|.+... ........+..+.+ .++|++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 58999999999999999999999999988866553 34433321 00000011111111 46899999999863
Q ss_pred cCCCCCcchHHHHHHHHHHHhcCC----CC------CC------cEEEEEecCCCC----CCCcccccccc
Q 004550 610 YVPIGPRFSNIISQTMLVLLKRLP----PK------GK------KLLVIGTTSEVS----FLDSVGICDAF 660 (745)
Q Consensus 610 ~~~~g~~~~~~~~~~Ll~~l~~~~----~~------~~------~v~vI~ttn~~~----~l~~~~l~~rf 660 (745)
..+++.|+.+++.-. .. .. .+.+|||+|..+ .+++ .+++||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~-al~~Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSP-ALLDRF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCH-HHHTT-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCH-HHHhhC
Confidence 667777877776521 10 11 389999999988 4555 444665
No 330
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.91 E-value=1.5e-08 Score=118.33 Aligned_cols=186 Identities=13% Similarity=0.189 Sum_probs=115.0
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC-----------------------------------CCCeEEEeccc---cccccch
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS-----------------------------------DFPFVKIISAE---SMIGLHE 577 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~-----------------------------------~~~~i~v~~~~---~l~g~~~ 577 (745)
.++||.|++|||||++|++++..+ ..||+.+.... .++|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 679999999999999999999876 24555542211 1333211
Q ss_pred hhHHHHH--------HHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----------CCCCcE
Q 004550 578 STKCAQI--------VKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKL 639 (745)
Q Consensus 578 ~~~~~~i--------~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v 639 (745)
-.. .+ ..++.. ....+||||||+++. ..+++.|+..|+.-. ....++
T Consensus 106 ~~~--~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~----------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~ 170 (633)
T TIGR02442 106 IER--ALREGEKAFQPGLLAE---AHRGILYIDEVNLLD----------DHLVDVLLDAAAMGVNRVEREGLSVSHPARF 170 (633)
T ss_pred HHH--HhhcCCeeecCcceee---cCCCeEEeChhhhCC----------HHHHHHHHHHHhcCCEEEEECCceeeecCCe
Confidence 000 00 011111 233699999999974 667788888876321 112468
Q ss_pred EEEEecCCCCCCCccccccccceEEEcCCCC-HHHHHHHHHHcc---------------------------------CCC
Q 004550 640 LVIGTTSEVSFLDSVGICDAFSVTYHVPTLK-TDDAKKVLKQLN---------------------------------VFA 685 (745)
Q Consensus 640 ~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~-~~~~~~Il~~~~---------------------------------~~~ 685 (745)
.+|+|+|..+..-+..|..||+..+.++.+. .++..+++++.. ...
T Consensus 171 ~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~i 250 (633)
T TIGR02442 171 VLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRI 250 (633)
T ss_pred EEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCC
Confidence 9999988543222235669999999998886 455555554310 111
Q ss_pred HHHHHHHHHHCC---CC-cHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHHHHh
Q 004550 686 EEDVDSASEALN---DM-PIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 686 ~~d~~~~~~~~~---~~-~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
++++...+..+. +. +.|..+.+++.|...|. -.|+..|+.+|+.+|+.-++
T Consensus 251 s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~Aa-------L~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 251 SDSLIRFISELCIEFGVDGHRADIVMARAARALAA-------LDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH-------HcCCCcCCHHHHHHHHHHHh
Confidence 222222222221 33 57777888888776664 35889999999999998765
No 331
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6e-09 Score=105.87 Aligned_cols=103 Identities=31% Similarity=0.519 Sum_probs=72.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-hccchhHHHH-HHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGETEKNI-RDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g~~e~~i-~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
.+|||.||+|||||+||+.+|+.+ ..++.+-++..+.. .|+|+.-+++ ..++..|...-... .-.||+|||||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rA----erGIIyIDEID 172 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERA----ERGIIYIDEID 172 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHH----hCCeEEEechh
Confidence 479999999999999999999999 47777778777765 7999887665 45554443221111 01299999999
Q ss_pred hhhhcCCCCCCCCcc-hhHHHHHHHHhccCc
Q 004550 334 AICKSRGSTRDGTGV-HDSIVNQLLTKIDGV 363 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~ 363 (745)
.+..+....+-..++ ..-+...||..++|.
T Consensus 173 KIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 173 KIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999776544322222 234666788888864
No 332
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=2.7e-08 Score=105.50 Aligned_cols=155 Identities=13% Similarity=0.061 Sum_probs=99.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------------eEEEeccccc-cc-cc--------hhhHHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------------FVKIISAESM-IG-LH--------ESTKCAQIVKVFE 589 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------------~i~v~~~~~l-~g-~~--------~~~~~~~i~~~f~ 589 (745)
+.+..+||+||+|+||+++|.++|...-+. +..-+.|+.. +. .. ..-+.+.||++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 445679999999999999999998643221 0000112221 10 00 0123667888887
Q ss_pred HHhcC----CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEE
Q 004550 590 DAYKS----PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYH 665 (745)
Q Consensus 590 ~a~~~----~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~ 665 (745)
.+... ...|++||++|++. ....++|+..|+..++ ++++|-+|+.++.+-+ -+++| +..+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~~~fiL~~~~~~~lLp-TIrSR-Cq~i~ 168 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN----------RAACNALLKTLEEPSP---GRYLWLISAQPARLPA-TIRSR-CQRLE 168 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC----------HHHHHHHHHHhhCCCC---CCeEEEEECChhhCch-HHHhh-heEee
Confidence 76543 45799999999973 5667788888876533 4445556676766666 44455 77999
Q ss_pred cCCCCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHH
Q 004550 666 VPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKL 704 (745)
Q Consensus 666 ~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~l 704 (745)
|++|+.++..+.|... +....++..+ ...++|..-.+
T Consensus 169 ~~~~~~~~~~~~L~~~-~~~~~~a~~~-~~l~~G~p~~A 205 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ-GVSERAAQEA-LDAARGHPGLA 205 (319)
T ss_pred CCCcCHHHHHHHHHHc-CCChHHHHHH-HHHcCCCHHHH
Confidence 9999999999999865 4555554444 34444444333
No 333
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.89 E-value=6.1e-08 Score=100.12 Aligned_cols=123 Identities=9% Similarity=0.155 Sum_probs=77.1
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC-------CCCCccc----cccccceEE
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-------SFLDSVG----ICDAFSVTY 664 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~-------~~l~~~~----l~~rf~~~i 664 (745)
|.||||||++.|- =.....|...|+ +.-.. +||.+||+- +...|.+ |.+|. .++
T Consensus 292 pGVLFIDEvHmLD----------IE~FsFlnrAlE---se~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII 356 (450)
T COG1224 292 PGVLFIDEVHMLD----------IECFSFLNRALE---SELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LII 356 (450)
T ss_pred cceEEEechhhhh----------HHHHHHHHHHhh---cccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEE
Confidence 6788888887762 122222322222 22334 455567752 2223332 22332 467
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCC-CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCL 739 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al 739 (745)
.--||+.+++++|++.. +...++|....+..+. .-++|-.+.++.-|...|+. .+...|..+|+++|.
T Consensus 357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~-------rg~~~V~~~dVe~a~ 429 (450)
T COG1224 357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKR-------RGSKRVEVEDVERAK 429 (450)
T ss_pred ecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHH-------hCCCeeehhHHHHHH
Confidence 88899999999999963 3444445544444444 78899999999877777754 366789999999887
Q ss_pred H
Q 004550 740 Q 740 (745)
Q Consensus 740 ~ 740 (745)
.
T Consensus 430 ~ 430 (450)
T COG1224 430 E 430 (450)
T ss_pred H
Confidence 6
No 334
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=3.7e-08 Score=104.88 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=107.3
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC----------eEEEecccccc--------ccch----------------h
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP----------FVKIISAESMI--------GLHE----------------S 578 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~----------~i~v~~~~~l~--------g~~~----------------~ 578 (745)
+.+..+||+||+|+||+++|.++|...-+. +...+.|+.+. |... .
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 446789999999999999999998653211 11112222210 1100 0
Q ss_pred hHHHHHHHHHHHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc
Q 004550 579 TKCAQIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV 654 (745)
Q Consensus 579 ~~~~~i~~~f~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~ 654 (745)
-+.+.++++.+.+.. +...|++||++|.+. ....++|+..|+..+ +.++|+ .|+.++.+-+.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------~~aaNaLLK~LEEPp---~~~fIL-i~~~~~~Ll~T 169 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------EAAANALLKTLEEPG---NGTLIL-IAPSPESLLPT 169 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcC----------HHHHHHHHHHHhCCC---CCeEEE-EECChHhCcHH
Confidence 123467777666543 456899999999973 567778888888754 234444 55566666553
Q ss_pred ccccccceEEEcCCCCHHHHHHHHHHccCCCHHHH-HHHHHHCCCCcHHHHHHHHHHH
Q 004550 655 GICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDV-DSASEALNDMPIKKLYMLIEMA 711 (745)
Q Consensus 655 ~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~d~-~~~~~~~~~~~ir~ll~~l~~a 711 (745)
+++| +..++|++++.+++.++|++.......+. ...+...+.|+.++++..++..
T Consensus 170 -I~SR-cq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 170 -IVSR-CQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred -HHhh-ceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455 78999999999999999998643222122 2345567799999998887654
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.88 E-value=1.1e-08 Score=112.28 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCC-CcEEEccch-hhhhccchh-HHHH--HHHHHHHHhhccccCCCCCeEEEE
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPE-VLSKFVGET-EKNI--RDLFADAENDQRTRGDQSDLHVII 328 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~-~~~~v~~~~-l~~~~~g~~-e~~i--~~~f~~a~~~~~~~~~~~~p~Il~ 328 (745)
...++||+||||||||++|++++..+... ++..+.+.. .....+|.. -... ..-|.... .|.-....++|
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~-----~G~L~~A~lLf 112 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLT-----SGYLPEAEIVF 112 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhc-----CCccccccEEe
Confidence 34679999999999999999999987432 233222220 111222211 0000 11121111 11110123999
Q ss_pred EccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc--------CCCcEEEEEEeCCCCC---CChhhhCCCCccceEEe
Q 004550 329 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------SLNNVLLIGMTNRKDM---LDEALLRPGRLEVQVEI 397 (745)
Q Consensus 329 iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~--------~~~~v~vI~~tn~~~~---id~al~r~gRf~~~i~i 397 (745)
+|||+.+. ..+.+.||..|..-. ..+.-+++++||.... ..+++.. ||...+.+
T Consensus 113 LDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~v 177 (498)
T PRK13531 113 LDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWL 177 (498)
T ss_pred ecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEEC
Confidence 99998653 446667777773211 1122345555564321 3358887 99889999
Q ss_pred cCCC-HHHHHHHHHHH
Q 004550 398 SLPD-ENGRLQILQIH 412 (745)
Q Consensus 398 ~~Pd-~~~r~~Il~~~ 412 (745)
|+|+ .++-.+++...
T Consensus 178 p~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 178 DKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCchHHHHHHHHcc
Confidence 9997 45557788754
No 336
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=2e-08 Score=115.80 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=116.6
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCC--CeEEEec---cccccccchhhHHHHHH---HHHHH--HhcCCCeEEEEecc
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDF--PFVKIIS---AESMIGLHESTKCAQIV---KVFED--AYKSPLSIIILDDI 604 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~--~~i~v~~---~~~l~g~~~~~~~~~i~---~~f~~--a~~~~~~il~lDEi 604 (745)
..++||.|+||||||++|++++..+.. ||+.+.. ++.++|...-. ..+. ..|.. ..+....+||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~--~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVE--ESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhh--hhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 578999999999999999999987653 6888752 33344432100 0000 00100 00123369999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCC----------CCCCcEEEEEecCCCC---CCCccccccccceEEEcCCCC-
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVS---FLDSVGICDAFSVTYHVPTLK- 670 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vI~ttn~~~---~l~~~~l~~rf~~~i~~p~~~- 670 (745)
+++- ..+++.|+..|+.-. .....+.||||+|..+ .+.+ .+..||...+.+..+.
T Consensus 94 ~rl~----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~-~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 94 NLLD----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPD-HLLDRLALHVSLEDVAS 162 (589)
T ss_pred hhCC----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCH-HHHHhccCeeecCCCCC
Confidence 9974 567778888776421 0123678899888764 2323 5568999887776554
Q ss_pred HHHHHHHHHHcc---------------------------CCCHHHHH-HHHHHCC--CC-cHHHHHHHHHHHHccccCCc
Q 004550 671 TDDAKKVLKQLN---------------------------VFAEEDVD-SASEALN--DM-PIKKLYMLIEMAAQGEQGGA 719 (745)
Q Consensus 671 ~~~~~~Il~~~~---------------------------~~~~~d~~-~~~~~~~--~~-~ir~ll~~l~~a~~~~~~~~ 719 (745)
.+++.+|+++.. ...++++. .++.... +. +.|..+.+++.|...|.
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa--- 239 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA--- 239 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH---
Confidence 555566655411 11222222 2222211 32 36777777777776653
Q ss_pred hhhcccCCCCccHhHHHHHHHHHh
Q 004550 720 AEAIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 720 ~~~~~~~~~~I~~~~~~~al~~~~ 743 (745)
..|+..|+.+|+..|+.-++
T Consensus 240 ----l~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 240 ----LHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred ----HhCCCCCCHHHHHHHHHHHh
Confidence 36889999999999988664
No 337
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.87 E-value=1.2e-07 Score=93.17 Aligned_cols=165 Identities=18% Similarity=0.275 Sum_probs=115.6
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC--CcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~--~~~~v~~~ 290 (745)
+.+.+.+ +.|.+.+.+.+++..-... .-.+..++||+|..|||||++++++..++.+. .++.|+..
T Consensus 55 ~~i~L~~--l~Gvd~qk~~L~~NT~~F~----------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 55 DPIDLAD--LVGVDRQKEALVRNTEQFA----------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCcCHHH--HhCchHHHHHHHHHHHHHH----------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 5677888 9999999988865433211 22456789999999999999999999988543 34556555
Q ss_pred hhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC-ccC-CCc
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-VES-LNN 368 (745)
Q Consensus 291 ~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-~~~-~~~ 368 (745)
++. .+-.+++..+.... .-|||+|++.- +..+.-...|-..+|| +.. ..|
T Consensus 123 dl~---------~Lp~l~~~Lr~~~~-------kFIlFcDDLSF------------e~gd~~yK~LKs~LeG~ve~rP~N 174 (287)
T COG2607 123 DLA---------TLPDLVELLRARPE-------KFILFCDDLSF------------EEGDDAYKALKSALEGGVEGRPAN 174 (287)
T ss_pred HHh---------hHHHHHHHHhcCCc-------eEEEEecCCCC------------CCCchHHHHHHHHhcCCcccCCCe
Confidence 442 34555665554432 35999998642 2233344556666665 333 458
Q ss_pred EEEEEEeCCCCCCChhh--------------------hCCCCccceEEecCCCHHHHHHHHHHHHcccc
Q 004550 369 VLLIGMTNRKDMLDEAL--------------------LRPGRLEVQVEISLPDENGRLQILQIHTNKMK 417 (745)
Q Consensus 369 v~vI~~tn~~~~id~al--------------------~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~ 417 (745)
|+|-+|+|+...|++-+ .=+.||...+.|++++.++-..|+..+.++..
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 99999999976664221 11349999999999999999999999988766
No 338
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.6e-08 Score=104.04 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCCCceeeeeccCCCCChhHHHHHHHhhCCCCe------------------------EEEecccccc-------------
Q 004550 531 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPF------------------------VKIISAESMI------------- 573 (745)
Q Consensus 531 ~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~------------------------i~v~~~~~l~------------- 573 (745)
..+.+..+||+||+|+||+++|+++|....+.. +.+..|+...
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 346678899999999999999999996543211 1111222100
Q ss_pred -----cc-----chhhHHHHHHHHHHHHh----cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcE
Q 004550 574 -----GL-----HESTKCAQIVKVFEDAY----KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKL 639 (745)
Q Consensus 574 -----g~-----~~~~~~~~i~~~f~~a~----~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v 639 (745)
|. +..-+.+.+|++.+.+. .+...|++||++|++. ....++||..|+..+ .++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp---~~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN----------VAAANALLKTLEEPP---PGT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC----------HHHHHHHHHHhcCCC---cCc
Confidence 00 00123567887777653 3456799999999974 556677877777643 366
Q ss_pred EEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHH
Q 004550 640 LVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 707 (745)
Q Consensus 640 ~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~ 707 (745)
++|.+|++++.+.+. +++| +..+.|++|+.+++.+.|...+ ..+.+. +...++|+...++.+
T Consensus 164 ~fiL~t~~~~~LLpT-I~SR-cq~i~~~~~~~~~~~~~L~~~~-~~~~~~---~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 164 VFLLVSARIDRLLPT-ILSR-CRQFPMTVPAPEAAAAWLAAQG-VADADA---LLAEAGGAPLAALAL 225 (342)
T ss_pred EEEEEECChhhCcHH-HHhc-CEEEEecCCCHHHHHHHHHHcC-CChHHH---HHHHcCCCHHHHHHH
Confidence 777788888888874 4455 5799999999999999998763 333221 233345555444433
No 339
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=4.6e-08 Score=105.33 Aligned_cols=155 Identities=23% Similarity=0.237 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------Ec------
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-------VN------ 288 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-------v~------ 288 (745)
+||.+..++.+ +.++..- +.+..+||+||+|+|||++|+++|+.+.+..... -+
T Consensus 8 ~~~q~~~~~~L-~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 8 TALQPVVVKML-QNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HhhHHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 55588877777 6665432 2334689999999999999999999874322000 00
Q ss_pred --cchhhh-hccch--hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc
Q 004550 289 --GPEVLS-KFVGE--TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 363 (745)
Q Consensus 289 --~~~l~~-~~~g~--~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~ 363 (745)
-+++.- ...|. .-..++++.+.+... +.. +...|++|||+|.+. ....+.||..++.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~-~~~---~~~kvviI~~a~~~~-------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS-GVE---SNKKVYIIEHADKMT-------------ASAANSLLKFLEE- 136 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhC-Ccc---cCceEEEeehHhhhC-------------HHHHHHHHHHhcC-
Confidence 011100 00111 224566665554432 121 234599999999883 4456778888885
Q ss_pred cCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 364 ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 364 ~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
...++++|.+|+.++.+.|.+++ |.. .+++++|+.++..++++.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 44577888899899999999999 754 789999999988777753
No 340
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.2e-08 Score=105.23 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=97.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC--------CeEEEeccccccccchhhHHHHHHHHHHHHh----cCCCeEEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF--------PFVKIISAESMIGLHESTKCAQIVKVFEDAY----KSPLSIII 600 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~--------~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~----~~~~~il~ 600 (745)
+.+..+||+||+|+|||++|+++|...-+ .+..+... -|. .-+.+.++++.+.+. .+...|++
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~i 98 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKK--SIGVDDIRNIIEEVNKKPYEGDKKVII 98 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCC--CCCHHHHHHHHHHHhcCcccCCceEEE
Confidence 44556799999999999999999985422 12222110 111 123456777776553 34567999
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHHH
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLKQ 680 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~~ 680 (745)
||++|.+ +....++|+..|+.+++ ..++|+ +|+.++.+-+ .+++| +..++|++++.+++...+++
T Consensus 99 I~~ad~m----------~~~a~naLLK~LEepp~--~t~~il-~~~~~~~ll~-TI~SR-c~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 99 IYNSEKM----------TEQAQNAFLKTIEEPPK--GVFIIL-LCENLEQILD-TIKSR-CQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred Eechhhc----------CHHHHHHHHHHhcCCCC--CeEEEE-EeCChHhCcH-HHHhh-ceeeeCCCcCHHHHHHHHHH
Confidence 9999887 35567788888886532 344444 4455665555 33444 57999999999999988876
Q ss_pred c-cCCCHHHHHHHHHHCCCCcHHHH
Q 004550 681 L-NVFAEEDVDSASEALNDMPIKKL 704 (745)
Q Consensus 681 ~-~~~~~~d~~~~~~~~~~~~ir~l 704 (745)
. ...+++++..++. +++|+..++
T Consensus 164 ~~~~~~~~~~~~l~~-~~~g~~~~a 187 (313)
T PRK05564 164 KYNDIKEEEKKSAIA-FSDGIPGKV 187 (313)
T ss_pred HhcCCCHHHHHHHHH-HcCCCHHHH
Confidence 4 2455666555543 444444433
No 341
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.85 E-value=2e-08 Score=107.90 Aligned_cols=195 Identities=20% Similarity=0.169 Sum_probs=109.5
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhh----
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK---- 295 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~---- 295 (745)
+-|-+..++++++.+-... +...+|||+|++||||+++|+++..... ..+++.++|..+-..
T Consensus 8 liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred cEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 5566777777744332221 3346799999999999999999987653 457888999875221
Q ss_pred -ccchhH-------HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---
Q 004550 296 -FVGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--- 364 (745)
Q Consensus 296 -~~g~~e-------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~--- 364 (745)
.+|... ......++.+. ...|||||+|.|.. .+...|+..++.-.
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~a~-----------gGtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERAD-----------GGTLFLDELATAPM-------------LVQEKLLRVIEYGELER 131 (326)
T ss_pred HHccccccccCCcccccCCchhccC-----------CCeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEe
Confidence 111000 00011122222 23899999999852 23344555443211
Q ss_pred ------CCCcEEEEEEeCCC-------CCCChhhhCCCCcc-ceEEecCCCH--HHHHHHHHHHHccccccC--C---CC
Q 004550 365 ------SLNNVLLIGMTNRK-------DMLDEALLRPGRLE-VQVEISLPDE--NGRLQILQIHTNKMKENS--F---LA 423 (745)
Q Consensus 365 ------~~~~v~vI~~tn~~-------~~id~al~r~gRf~-~~i~i~~Pd~--~~r~~Il~~~~~~~~~~~--~---l~ 423 (745)
...++.+|++|+.. ..+.+.|.. ||. ..|.+|+..+ ++...++..++..+.... . -.
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGF 209 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 11258899988763 234556655 663 3455544432 334455555554332110 0 11
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 424 PDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 424 ~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
+...+..|....---+-++|+++++.|+..+
T Consensus 210 s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 210 TERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2233455555554456789999999887543
No 342
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-08 Score=111.75 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=117.0
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
..++|++ |-|-..++.++++.+- ...+.+..|||+|.+||||.++||+|.+... ..+|+.+||.
T Consensus 240 a~y~f~~--Iig~S~~m~~~~~~ak------------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCa 305 (560)
T COG3829 240 AKYTFDD--IIGESPAMLRVLELAK------------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCA 305 (560)
T ss_pred cccchhh--hccCCHHHHHHHHHHH------------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecc
Confidence 4577888 7777777776643322 1234556899999999999999999998763 4578889997
Q ss_pred hhhh-------------hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHH
Q 004550 291 EVLS-------------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 357 (745)
Q Consensus 291 ~l~~-------------~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL 357 (745)
.+-. .|.|.....-..+|+.|..+ -||+|||..|. -.+...||
T Consensus 306 AiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG-----------TLFLDEIgemp-------------l~LQaKLL 361 (560)
T COG3829 306 AIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG-----------TLFLDEIGEMP-------------LPLQAKLL 361 (560)
T ss_pred cCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC-----------eEEehhhccCC-------------HHHHHHHH
Confidence 5533 22222222223455555443 89999999874 23445555
Q ss_pred HhccC--------cc-CCCcEEEEEEeCCCCCCChhhhCCCCccc-------eEEecCCCHHHHHH----HHHHHH----
Q 004550 358 TKIDG--------VE-SLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRLQ----ILQIHT---- 413 (745)
Q Consensus 358 ~~~d~--------~~-~~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~~----Il~~~~---- 413 (745)
..++. .. ..-+|.+|+|||+. +-.++ ..|+|.. ++.+..|...+|.+ +...++
T Consensus 362 RVLQEkei~rvG~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s 438 (560)
T COG3829 362 RVLQEKEIERVGGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFS 438 (560)
T ss_pred HHHhhceEEecCCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHH
Confidence 55542 11 12369999999984 11211 2333322 35566665554443 333333
Q ss_pred ccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004550 414 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 414 ~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 452 (745)
++++.+..-..+..+..|.+..---+-++|+++++.+..
T Consensus 439 ~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 439 RRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 333333221122234445444433466899999998875
No 343
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.1e-07 Score=101.13 Aligned_cols=159 Identities=12% Similarity=0.048 Sum_probs=100.9
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-------eE---------EEeccccc-ccc--chhhHHHHHHHHHHHHh-
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-------FV---------KIISAESM-IGL--HESTKCAQIVKVFEDAY- 592 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~i---------~v~~~~~l-~g~--~~~~~~~~i~~~f~~a~- 592 (745)
+.+..+||+||+|+||+++|+++|...-+. +- .-+.|+.. +.. ...-+.+.+|++-+.+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 445678999999999999999999654221 00 00112211 100 01124667887766654
Q ss_pred ---cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCC
Q 004550 593 ---KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 669 (745)
Q Consensus 593 ---~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~ 669 (745)
.++..|++||++|++. ....++|+..|+..++ .+++|-+|+.++.+-+. +++| +..+.|+++
T Consensus 102 ~~~~g~~KV~iI~~a~~m~----------~~AaNaLLKtLEEPp~---~~~fiL~t~~~~~llpT-I~SR-C~~~~~~~~ 166 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT----------EAAANALLKTLEEPRP---NTYFLLQADLSAALLPT-IYSR-CQTWLIHPP 166 (325)
T ss_pred ccccCCceEEEEechhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChHhCchH-HHhh-ceEEeCCCC
Confidence 3456799999999973 5677788888876533 45556577777766663 4444 789999999
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHH
Q 004550 670 KTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYML 707 (745)
Q Consensus 670 ~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~ 707 (745)
+.+++.+.|.......+.++. .+...++|....++..
T Consensus 167 ~~~~~~~~L~~~~~~~~~~~~-~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 167 EEQQALDWLQAQSSAEISEIL-TALRINYGRPLLALTF 203 (325)
T ss_pred CHHHHHHHHHHHhccChHHHH-HHHHHcCCCHHHHHHH
Confidence 999999998876444444433 3344455544444333
No 344
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=4e-09 Score=113.84 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=87.0
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc-----cccchhhHHHHHHHHHHHHhc-CCC---eEEEEeccc
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-----IGLHESTKCAQIVKVFEDAYK-SPL---SIIILDDIE 605 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l-----~g~~~~~~~~~i~~~f~~a~~-~~~---~il~lDEid 605 (745)
..++||.||||||||++|+.+|...+.+|+++.+...+ +|.+.......-...|.-... -.. +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 36799999999999999999999999999999776543 454332211000010100000 011 499999999
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHhc----CCCCC-----CcEEEEEecCCCCCCC----ccccccccceEEEcCCC-CH
Q 004550 606 RLLEYVPIGPRFSNIISQTMLVLLKR----LPPKG-----KKLLVIGTTSEVSFLD----SVGICDAFSVTYHVPTL-KT 671 (745)
Q Consensus 606 ~l~~~~~~g~~~~~~~~~~Ll~~l~~----~~~~~-----~~v~vI~ttn~~~~l~----~~~l~~rf~~~i~~p~~-~~ 671 (745)
+.. ..++.+|+..|+. .+... ...+||+|+|..+.-. +..+.+||...++++.| +.
T Consensus 123 ra~----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 123 RAP----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred cCC----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 863 4556666666655 12223 5678898989533222 22556899889999988 45
Q ss_pred HHHHHHHHHc
Q 004550 672 DDAKKVLKQL 681 (745)
Q Consensus 672 ~~~~~Il~~~ 681 (745)
.+...++.+.
T Consensus 193 ~e~~~i~~~~ 202 (329)
T COG0714 193 EEERIILARV 202 (329)
T ss_pred HHHHHHHHhC
Confidence 5555555553
No 345
>PRK15115 response regulator GlrR; Provisional
Probab=98.84 E-value=1.1e-08 Score=115.31 Aligned_cols=167 Identities=21% Similarity=0.282 Sum_probs=106.7
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhH---HHHHHHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTK---CAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~---~~~i~~~f~~a~~~~~~il~ 600 (745)
...++++|++|||||++|+++...+ +.+|+.+++... ++|...+.. ...-...|.. .....||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEE
Confidence 3568999999999999999998765 478999987753 111100000 0000012222 2346899
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCCC--------CCCcEEEEEecCCCCCCCcccccccc---------ceE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPP--------KGKKLLVIGTTSEVSFLDSVGICDAF---------SVT 663 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~--------~~~~v~vI~ttn~~~~l~~~~l~~rf---------~~~ 663 (745)
|||||.|. ...+..|+..++.-.- ...++.+|+||+.. +......++| ...
T Consensus 234 l~~i~~l~----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~~~f~~~l~~~l~~~~ 301 (444)
T PRK15115 234 LDEIGDMP----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMARGEFREDLYYRLNVVS 301 (444)
T ss_pred EEccccCC----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHcCCccHHHHHhhceee
Confidence 99999984 5567777777754210 11257888888753 3333333455 467
Q ss_pred EEcCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcccc
Q 004550 664 YHVPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 664 i~~p~~~--~~~~~~Il~~~--------~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~ 716 (745)
|.+||+. .+|+..+++.. + .++++-+..+...-++|++|+|.++++.|...+.
T Consensus 302 i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~ 368 (444)
T PRK15115 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS 368 (444)
T ss_pred ecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 8899998 56776665542 1 2455555555555569999999999999887654
No 346
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.5e-08 Score=114.92 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=99.0
Q ss_pred eeeeeccCCCCChhHHHHHHHhh----------CCCCeEEEeccccccc-cchhhHHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 536 VTCLLEGPSGSGKTALAATAGID----------SDFPFVKIISAESMIG-LHESTKCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~----------~~~~~i~v~~~~~l~g-~~~~~~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
.+-+|.|+||+|||+++.-+|.. .+...+.++......| .+-|+.++.++.+.+...++++.|||||||
T Consensus 192 NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEi 271 (786)
T COG0542 192 NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEI 271 (786)
T ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEech
Confidence 44589999999999999998853 2445666666665566 577788899999999999988999999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC---CC-CccccccccceEEEcCCCCHHHHHHHHHH
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS---FL-DSVGICDAFSVTYHVPTLKTDDAKKVLKQ 680 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~---~l-~~~~l~~rf~~~i~~p~~~~~~~~~Il~~ 680 (745)
+.+.+.+...+. +--.-+.|.-.|- +..+-+||+|+..+ .+ ..+.|.+||. .|.+..|+.++-..||+-
T Consensus 272 HtiVGAG~~~G~-a~DAaNiLKPaLA-----RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 272 HTIVGAGATEGG-AMDAANLLKPALA-----RGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRG 344 (786)
T ss_pred hhhcCCCccccc-ccchhhhhHHHHh-----cCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHH
Confidence 999977654221 1112222322222 23678888887544 22 3346656766 889999999999999985
No 347
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.83 E-value=4.3e-08 Score=111.69 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=80.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---EccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~---v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
..+|||+|+||||||++||++++......+.. .++..+.... +++-+.......+..-......+++|||
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~-------~~~~~~g~~~~~~G~l~~A~~Gil~iDE 308 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV-------TRDPETREFTLEGGALVLADNGVCCIDE 308 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc-------eEccCcceEEecCccEEecCCCEEEEec
Confidence 34799999999999999999999874322111 0111111100 0000000000000000000123999999
Q ss_pred chhhhhcCCCCCCCCcchhHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC-------------CCChhhhC
Q 004550 332 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD-------------MLDEALLR 387 (745)
Q Consensus 332 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~-------------~id~al~r 387 (745)
+|.+.+ .....|+..|+.-. -..++.|||++|+.+ .+++++++
T Consensus 309 i~~l~~-------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 309 FDKMDD-------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhhCCH-------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 999842 23344555554211 124689999999853 48999999
Q ss_pred CCCccceE-EecCCCHHHHHHHHHHHH
Q 004550 388 PGRLEVQV-EISLPDENGRLQILQIHT 413 (745)
Q Consensus 388 ~gRf~~~i-~i~~Pd~~~r~~Il~~~~ 413 (745)
||+..+ ..+.|+.+...+|.+..+
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHH
Confidence 998754 446889998888888754
No 348
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.83 E-value=3.1e-08 Score=106.41 Aligned_cols=180 Identities=18% Similarity=0.178 Sum_probs=99.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHH-------HhhccccCCCCCe
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADA-------ENDQRTRGDQSDL 324 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a-------~~~~~~~~~~~~p 324 (745)
...+|||+|++||||+++|++|..... ..+++.+||..+-.... -..+|... ....+..-.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l------~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL------DSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH------HHHHhccccccccCcccccCCchhhCCC
Confidence 345799999999999999999987653 45788899986532110 01122111 0000000001112
Q ss_pred EEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCC-------CCCChhhhCC
Q 004550 325 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRK-------DMLDEALLRP 388 (745)
Q Consensus 325 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~-------~~id~al~r~ 388 (745)
..||||||+.|.. .+...|+..++.-. ...++.+|++|+.. ..+.+.|..
T Consensus 95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~- 160 (329)
T TIGR02974 95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD- 160 (329)
T ss_pred CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH-
Confidence 3999999999842 23444555543211 12468999999763 123455554
Q ss_pred CCcc-ceEEecCCC--HHHHHHHHHHHHccccc----cC-CCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 389 GRLE-VQVEISLPD--ENGRLQILQIHTNKMKE----NS-FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 389 gRf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~----~~-~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
|+. ..|.+|+.. .++...+++.++.++.. .. .-..+..+..|....---+-++|+++++.++..+
T Consensus 161 -rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 161 -RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 553 244444443 23444455555544321 11 1122333555666554456789999998887654
No 349
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.82 E-value=3.4e-08 Score=111.52 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=107.3
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccc--------cccchhhH---HHHHHHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTK---CAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l--------~g~~~~~~---~~~i~~~f~~a~~~~~~il~ 600 (745)
..+++++|++||||+++|+++...+ +.+|+.+++...- +|...+.. .......|.. ...+.||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEE
Confidence 4668999999999999999998765 4689999877531 11110000 0000111222 3347899
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC-------CCCcccccccc-ceEE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS-------FLDSVGICDAF-SVTY 664 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~-------~l~~~~l~~rf-~~~i 664 (745)
||||+.|. ..+++.|+..++.-. ....++.+|+||+..- .+.+ .|..|+ ...|
T Consensus 239 l~~i~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~-~L~~~l~~~~i 307 (445)
T TIGR02915 239 LDEIGDLP----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRE-DLFYRIAEISI 307 (445)
T ss_pred EechhhCC----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccH-HHHHHhcccee
Confidence 99999984 556777777775421 0112567888887642 1111 222333 3678
Q ss_pred EcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 665 HVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 665 ~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
.+||+. .+|+..+++.. ..++++-+..+...-++|++|+|.++++.|...+..
T Consensus 308 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 308 TIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred cCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 999999 67777766642 135555556666666699999999999999876543
No 350
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.82 E-value=2.6e-08 Score=108.61 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=78.6
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCC-------eEEEecc---cccc-ccchhh-H----HHHHHHHHHHHhcC--CC
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFP-------FVKIISA---ESMI-GLHEST-K----CAQIVKVFEDAYKS--PL 596 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~-------~i~v~~~---~~l~-g~~~~~-~----~~~i~~~f~~a~~~--~~ 596 (745)
..+++|+||||||||++|+.+|...... ++.+... +.++ |..... . ...+.++...|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999765321 1222111 1122 221110 0 01234455666543 47
Q ss_pred eEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC-------------------CCCCCcEEEEEecCCCC----CCCc
Q 004550 597 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL-------------------PPKGKKLLVIGTTSEVS----FLDS 653 (745)
Q Consensus 597 ~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~-------------------~~~~~~v~vI~ttn~~~----~l~~ 653 (745)
.+||||||++.. -..+...++.+|+.- -.-..++.||||+|..| .+|.
T Consensus 274 ~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~ 344 (459)
T PRK11331 274 YVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY 344 (459)
T ss_pred cEEEEehhhccC---------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccH
Confidence 999999999853 122333333333310 01135799999999988 5666
Q ss_pred cccccccceEEEcC-CCCHHHHHHHHHH
Q 004550 654 VGICDAFSVTYHVP-TLKTDDAKKVLKQ 680 (745)
Q Consensus 654 ~~l~~rf~~~i~~p-~~~~~~~~~Il~~ 680 (745)
.+++||.. +++. .++..++++.+..
T Consensus 345 -AlrRRF~f-i~i~p~~~~~~~~~~l~~ 370 (459)
T PRK11331 345 -ALRRRFSF-IDIEPGFDTPQFRNFLLN 370 (459)
T ss_pred -HHHhhhhe-EEecCCCChHHHHHHHHh
Confidence 56688864 4554 3565666665544
No 351
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.82 E-value=8e-08 Score=103.62 Aligned_cols=129 Identities=24% Similarity=0.329 Sum_probs=85.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcC-----------------------CCcEEEccchhhhhccchhHHHHHHHHHHHHh
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNG-----------------------MEPKIVNGPEVLSKFVGETEKNIRDLFADAEN 313 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~-----------------------~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~ 313 (745)
.+||+||||+|||++|.++|+.+.+ ..++.++.++....- .....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 6999999999999999999999853 234445544332210 123334444333322
Q ss_pred hccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccc
Q 004550 314 DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEV 393 (745)
Q Consensus 314 ~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~ 393 (745)
. +..+...|++|||+|.+.. ...+.++..++ ....+..+|.+||.++.+-+.+++ |..
T Consensus 104 ~----~~~~~~kviiidead~mt~-------------~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc~- 161 (325)
T COG0470 104 S----PLEGGYKVVIIDEADKLTE-------------DAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RCQ- 161 (325)
T ss_pred C----CCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cce-
Confidence 2 2223456999999999953 34566777766 344678899999999999999998 755
Q ss_pred eEEecCCCHHHHHHHH
Q 004550 394 QVEISLPDENGRLQIL 409 (745)
Q Consensus 394 ~i~i~~Pd~~~r~~Il 409 (745)
.+.|++|+........
T Consensus 162 ~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 162 RIRFKPPSRLEAIAWL 177 (325)
T ss_pred eeecCCchHHHHHHHh
Confidence 6778776655444443
No 352
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.81 E-value=1.8e-07 Score=96.62 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--------CCCcEEEccchh------hh--------hcc-ch-hHHHHHHHHH
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEV------LS--------KFV-GE-TEKNIRDLFA 309 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--------~~~~~~v~~~~l------~~--------~~~-g~-~e~~i~~~f~ 309 (745)
...++||+|++|.|||++++.+.+... ..+++.+..+.- .. .|. .. ..+.-.++..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 345799999999999999999997652 113444433221 11 110 01 1111222223
Q ss_pred HHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCC--CChhhhC
Q 004550 310 DAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM--LDEALLR 387 (745)
Q Consensus 310 ~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~--id~al~r 387 (745)
..+... +.+|+|||+|.++.-.. ...+.+++. |..+. -.-.-.++.+|+..-... -|+.+.+
T Consensus 140 llr~~~--------vrmLIIDE~H~lLaGs~------~~qr~~Ln~-LK~L~-NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 140 LLRRLG--------VRMLIIDEFHNLLAGSY------RKQREFLNA-LKFLG-NELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred HHHHcC--------CcEEEeechHHHhcccH------HHHHHHHHH-HHHHh-hccCCCeEEeccHHHHHHhccCHHHHh
Confidence 333332 34999999999863211 112333333 33321 111124555554322222 3788888
Q ss_pred CCCccceEEecCCC-HHHHHHHHHHHHccccc--cCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 004550 388 PGRLEVQVEISLPD-ENGRLQILQIHTNKMKE--NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNR 457 (745)
Q Consensus 388 ~gRf~~~i~i~~Pd-~~~r~~Il~~~~~~~~~--~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r 457 (745)
||.. +.+|.-. .++-..++..+-+.++- ...+....-...+-..+.|..| ++..++..|+..|++.
T Consensus 204 --RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 204 --RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred --ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 9984 5566433 24455677766555542 2223333334567788888776 7889999999999874
No 353
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.80 E-value=5e-09 Score=101.19 Aligned_cols=112 Identities=23% Similarity=0.325 Sum_probs=70.7
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhh---HHHHHHHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHEST---KCAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~---~~~~i~~~f~~a~~~~~~il~ 600 (745)
+.++|++|++||||+.+|+++...+ +.||+.+++... ++|...+. ....-..+|+.|.. ..||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEe
Confidence 3789999999999999999999865 579999998753 23432210 00011256666654 7899
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC-----C---CCCcEEEEEecCCCCCCCccccccccc
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIGTTSEVSFLDSVGICDAFS 661 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vI~ttn~~~~l~~~~l~~rf~ 661 (745)
||||+.|. ..++..|+..|+.-. . ..-++.||++|+.+ +....-.++|.
T Consensus 99 Ld~I~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~~g~fr 155 (168)
T PF00158_consen 99 LDEIEDLP----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVEQGRFR 155 (168)
T ss_dssp EETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHTTSS-
T ss_pred ecchhhhH----------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHHcCCCh
Confidence 99999984 567777777776421 1 12378899999864 33333335554
No 354
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.79 E-value=4.1e-09 Score=103.35 Aligned_cols=47 Identities=38% Similarity=0.588 Sum_probs=33.6
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 280 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~ 280 (745)
+|++ |-|++..+..+. -+.. | ..|+||+||||||||++|+.+...+.
T Consensus 1 Df~d--I~GQe~aKrAL~-iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSD--IVGQEEAKRALE-IAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCC--SSSTHHHHHHHH-HHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred Chhh--hcCcHHHHHHHH-HHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3677 999999887772 2221 2 24899999999999999999998774
No 355
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.79 E-value=5.4e-08 Score=112.16 Aligned_cols=206 Identities=19% Similarity=0.217 Sum_probs=116.1
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~ 291 (745)
...|++ +-|-+..++++.+.+-... ....+|||+|++||||+++|++|..... +.+++.+||..
T Consensus 192 ~~~~~~--liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 192 SGKEDG--IIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA 257 (534)
T ss_pred cCccCc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC
Confidence 456666 7888888888744433221 3345799999999999999999998763 45788899987
Q ss_pred hhhhccchhHHHHHHHHHHHHh-------hccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 292 VLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~~-------~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
+..... -..+|...+. ..+..-......+|||||||.|.+ .+...|+..++.-.
T Consensus 258 ~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 258 LSETLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-------------AFQAKLLRVLQEGE 318 (534)
T ss_pred CCHHHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-------------HHHHHHHHHHhcCc
Confidence 632110 1122211100 000000011123999999999852 23344555543211
Q ss_pred ---------CCCcEEEEEEeCCCC-------CCChhhhCCCCcc-ceEEecCCC--HHHHHHHHHHHHccccccC---CC
Q 004550 365 ---------SLNNVLLIGMTNRKD-------MLDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKENS---FL 422 (745)
Q Consensus 365 ---------~~~~v~vI~~tn~~~-------~id~al~r~gRf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~~~---~l 422 (745)
...++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++.+..... .-
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~ 396 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT 396 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence 112588999987641 12233332 332 245555443 2445566666665432111 11
Q ss_pred CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 423 APDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 423 ~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
.++..+..|....-.-+-++|+++++.|+..+
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 22334556666654457789999999887543
No 356
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.78 E-value=5.3e-08 Score=94.86 Aligned_cols=180 Identities=21% Similarity=0.256 Sum_probs=102.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCC----CcEEEcc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~----~~~~v~~ 289 (745)
+..+.| |.|-++-++.+ ..+..-- ...++++.|||||||||-+.++|+++-+. .++.+|+
T Consensus 23 P~~l~d--IVGNe~tv~rl--~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 23 PSVLQD--IVGNEDTVERL--SVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred chHHHH--hhCCHHHHHHH--HHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 456777 99999988888 3332221 12269999999999999999999998543 2445666
Q ss_pred chhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcE
Q 004550 290 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 290 ~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v 369 (745)
++-.+- +..++--+.|.+-+-.-|. |+ -.||++||.|++... .++. |-.-|+=.. +..
T Consensus 87 SdeRGI---DvVRn~IK~FAQ~kv~lp~-gr---hKIiILDEADSMT~g----------AQQA---lRRtMEiyS--~tt 144 (333)
T KOG0991|consen 87 SDERGI---DVVRNKIKMFAQKKVTLPP-GR---HKIIILDEADSMTAG----------AQQA---LRRTMEIYS--NTT 144 (333)
T ss_pred cccccc---HHHHHHHHHHHHhhccCCC-Cc---eeEEEeeccchhhhH----------HHHH---HHHHHHHHc--ccc
Confidence 653221 2334445566655544332 22 239999999998521 1222 222233222 345
Q ss_pred EEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 437 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g 437 (745)
.+..++|..+.|-+.+.+ |+.. +.+.-.+.. +||+....-...+..-..+..++.+.-..+|
T Consensus 145 RFalaCN~s~KIiEPIQS--RCAi-LRysklsd~---qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQS--RCAI-LRYSKLSDQ---QILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhhcchhhhhhhHHh--hhHh-hhhcccCHH---HHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 677788998888887877 6542 333333333 3333322111111112334446666655555
No 357
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.78 E-value=8.5e-08 Score=94.18 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=104.0
Q ss_pred cccceeeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchh
Q 004550 502 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHES 578 (745)
Q Consensus 502 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~ 578 (745)
.+..+.++..+.+.+.+...+++ ...|..++||+|..|||||+++|++-.+. +...|.|...+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl------- 124 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL------- 124 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH-------
Confidence 34445555544444444443333 34678899999999999999999988664 556676643332
Q ss_pred hHHHHHHHHHHHHhcCC-CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcC-CCCCCcEEEEEecCCCCCCCc---
Q 004550 579 TKCAQIVKVFEDAYKSP-LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRL-PPKGKKLLVIGTTSEVSFLDS--- 653 (745)
Q Consensus 579 ~~~~~i~~~f~~a~~~~-~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~-~~~~~~v~vI~ttn~~~~l~~--- 653 (745)
..+-.+++..+..+ .-|||.|+.--= . .+.....|...|++- .....+|+|-||+|+...|..
T Consensus 125 ---~~Lp~l~~~Lr~~~~kFIlFcDDLSFe-----~----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 125 ---ATLPDLVELLRARPEKFILFCDDLSFE-----E----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred ---hhHHHHHHHHhcCCceEEEEecCCCCC-----C----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 24556666665444 348888987321 1 233455566666663 334458999999999876541
Q ss_pred ------------------cccccccceEEEcCCCCHHHHHHHHHHc
Q 004550 654 ------------------VGICDAFSVTYHVPTLKTDDAKKVLKQL 681 (745)
Q Consensus 654 ------------------~~l~~rf~~~i~~p~~~~~~~~~Il~~~ 681 (745)
..+..||..++.|++++.++..+|++.+
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHH
Confidence 1245899999999999999999999874
No 358
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=1e-07 Score=112.19 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=115.3
Q ss_pred EEEEc--CCCChHHHHHHHHHHHhc----CCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 258 MLLYG--PPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 258 iLL~G--ppGtGKT~lar~la~~l~----~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
-+..| |++.||||+|+++|+++- +..++.+|+++..+ -..++++...+....+..+ ....|+||||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~--~~~KVvIIDE 638 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGG--ASFKIIFLDE 638 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCC--CCCEEEEEEC
Confidence 34558 999999999999999972 23578899886422 2356766666554433211 1246999999
Q ss_pred chhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 332 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 332 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
+|.|. ....+.|+..|+.. ..++.+|++||.++.+.+++++ |+. .+.|++|+.++..+.++.
T Consensus 639 aD~Lt-------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 639 ADALT-------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cccCC-------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHH
Confidence 99984 23456688888743 3578899999999999999998 864 789999999888888876
Q ss_pred HHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 412 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 412 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
.+.+.. ...++..+..++..+.|-. +..-++++.++
T Consensus 701 I~~~Eg---i~i~~e~L~~Ia~~s~GDl-R~AIn~Lq~~~ 736 (846)
T PRK04132 701 IAENEG---LELTEEGLQAILYIAEGDM-RRAINILQAAA 736 (846)
T ss_pred HHHhcC---CCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 655322 1124557888999998843 44444555443
No 359
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.78 E-value=8.1e-08 Score=110.89 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=87.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCC-CcEEEccchhhhhccchhHHHHHHHHHHHHhhc----cccCCCCCeEEEEEc
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ----RTRGDQSDLHVIIFD 330 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~~-~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~----~~~~~~~~p~Il~iD 330 (745)
.||||.|+||||||++|+++++.+... ++..+.........+|.. .+........ +..-......+||+|
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-----dl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-----DVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-----hhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 579999999999999999999987543 455555322222333321 1111111110 000000111399999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC---CCChhhhCCCCccceEE
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVE 396 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~---~id~al~r~gRf~~~i~ 396 (745)
|++.+. ..+.+.|+..|+.-. ...++.+|+++|..+ .+.+++.. ||..++.
T Consensus 92 Ei~rl~-------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 92 MANLLD-------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred chhhCC-------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 999984 345566666665211 124689999999875 68999998 9999887
Q ss_pred ecC-CCHHHHHHHHHHHH
Q 004550 397 ISL-PDENGRLQILQIHT 413 (745)
Q Consensus 397 i~~-Pd~~~r~~Il~~~~ 413 (745)
+.. |+.++|.+|++...
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 774 56788999998765
No 360
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.77 E-value=1.4e-07 Score=107.22 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=109.5
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhH---HHHHHHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTK---CAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~---~~~i~~~f~~a~~~~~~il~ 600 (745)
...+|+.|++|||||++|++++..+ +.||+.+++... ++|...+.. ...-...|.. ...+.||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEE
Confidence 4579999999999999999999875 579999988753 111111000 0000011222 2346799
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC--CCCc----ccccccc-ceEEE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDS----VGICDAF-SVTYH 665 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~--~l~~----~~l~~rf-~~~i~ 665 (745)
||||+.|. ...+..|+..++.-. +...++.+|+||+..- .+.. ..|..|| ...|.
T Consensus 238 l~~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~ 307 (469)
T PRK10923 238 LDEIGDMP----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVH 307 (469)
T ss_pred EeccccCC----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeec
Confidence 99999984 456667777775421 1112567888887532 1111 1333555 47899
Q ss_pred cCCCC--HHHHHHHHHHc--------c----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 666 VPTLK--TDDAKKVLKQL--------N----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 666 ~p~~~--~~~~~~Il~~~--------~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
+||+. .+|+..+++.+ + .++++-+..+...-++|++|+|.++++.+...+..
T Consensus 308 ~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 308 LPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAG 373 (469)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 99999 67777777652 1 35555555566666699999999999999887643
No 361
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-08 Score=104.62 Aligned_cols=102 Identities=29% Similarity=0.534 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhh-hccchh-HHHHHHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~-~~~g~~-e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
.+|||.||+|+|||+||+.+|+.+ ..++.+.+|..+.. .|+|+. |.-+.+++..|...-.... -.|+||||+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ----qGIVflDEvD 301 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ----QGIVFLDEVD 301 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh----cCeEEEehhh
Confidence 479999999999999999999999 58888899998876 789976 4556777777654322111 1299999999
Q ss_pred hhhhcCCCCCCCCcch-hHHHHHHHHhccC
Q 004550 334 AICKSRGSTRDGTGVH-DSIVNQLLTKIDG 362 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~-~~~~~~LL~~~d~ 362 (745)
.|..+..+.....++. .-+...||..++|
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcc
Confidence 9986554443332322 3355667777775
No 362
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.76 E-value=1.1e-07 Score=112.64 Aligned_cols=199 Identities=24% Similarity=0.295 Sum_probs=114.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~ 291 (745)
+..|++ +-|.+..++++++++-... ....+|||+|++|||||++|++|..... +.+++.++|..
T Consensus 372 n~~~~~--liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 372 DSEFGE--IIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred cccccc--eeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 356666 7777777777744333221 2345799999999999999999998753 45788889876
Q ss_pred hhhh-----ccch--------hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHH
Q 004550 292 VLSK-----FVGE--------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 358 (745)
Q Consensus 292 l~~~-----~~g~--------~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 358 (745)
+... .+|. .... ...|+.+.. .+||||||+.+.. .+...|+.
T Consensus 438 ~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a~~-----------GtL~Ldei~~L~~-------------~~Q~~L~~ 492 (686)
T PRK15429 438 MPAGLLESDLFGHERGAFTGASAQR-IGRFELADK-----------SSLFLDEVGDMPL-------------ELQPKLLR 492 (686)
T ss_pred CChhHhhhhhcCcccccccccccch-hhHHHhcCC-----------CeEEEechhhCCH-------------HHHHHHHH
Confidence 5321 1111 1111 123333332 2999999999842 23444555
Q ss_pred hccCcc---------CCCcEEEEEEeCCCC--C-----CChhhhCCCCccceEEecCCCHHHHHH----HHHHHHcccc-
Q 004550 359 KIDGVE---------SLNNVLLIGMTNRKD--M-----LDEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKMK- 417 (745)
Q Consensus 359 ~~d~~~---------~~~~v~vI~~tn~~~--~-----id~al~r~gRf~~~i~i~~Pd~~~r~~----Il~~~~~~~~- 417 (745)
.++.-. ...++.+|++|+..- . +.+.+.. |+. .+.|..|...+|.+ +++.++.++.
T Consensus 493 ~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~ 569 (686)
T PRK15429 493 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIAR 569 (686)
T ss_pred HHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHH
Confidence 443211 124688999997642 1 1222222 332 34566666555543 4555544432
Q ss_pred ---ccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 418 ---ENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 418 ---~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
....-.+...+..|....---+-++|+++++.|+..+
T Consensus 570 ~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 570 RMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 1111122334566666655557799999999988644
No 363
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.76 E-value=8.1e-08 Score=109.73 Aligned_cols=199 Identities=22% Similarity=0.199 Sum_probs=113.8
Q ss_pred cccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhh
Q 004550 216 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVL 293 (745)
Q Consensus 216 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~ 293 (745)
.+.+ +.|.+..++++.+++-... ..+.+|||+|++||||+++|+++..... ..+++.+||..+-
T Consensus 185 ~~~~--iig~s~~~~~~~~~i~~~a------------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGE--MIGQSPAMQQLKKEIEVVA------------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred cCCc--eeecCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 4444 7788888877744332211 3346799999999999999999998753 4578889998763
Q ss_pred hhc-----cchhHH-------HHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc
Q 004550 294 SKF-----VGETEK-------NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 361 (745)
Q Consensus 294 ~~~-----~g~~e~-------~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 361 (745)
... +|.... .-...|+.|. ...|||||||.|.. .+...|+..++
T Consensus 251 ~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~-----------gGtL~ldeI~~L~~-------------~~Q~~Ll~~l~ 306 (509)
T PRK05022 251 ESLAESELFGHVKGAFTGAISNRSGKFELAD-----------GGTLFLDEIGELPL-------------ALQAKLLRVLQ 306 (509)
T ss_pred hHHHHHHhcCccccccCCCcccCCcchhhcC-----------CCEEEecChhhCCH-------------HHHHHHHHHHh
Confidence 211 110000 0001222222 23899999999852 23344555443
Q ss_pred Ccc---------CCCcEEEEEEeCCCC-------CCChhhhCCCCccceEEecCCCHHHH----HHHHHHHHccccc---
Q 004550 362 GVE---------SLNNVLLIGMTNRKD-------MLDEALLRPGRLEVQVEISLPDENGR----LQILQIHTNKMKE--- 418 (745)
Q Consensus 362 ~~~---------~~~~v~vI~~tn~~~-------~id~al~r~gRf~~~i~i~~Pd~~~r----~~Il~~~~~~~~~--- 418 (745)
.-. ...++.+|++||..- .+.+.|.. |+. .+.|..|...+| ..+++.++++...
T Consensus 307 ~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~ 383 (509)
T PRK05022 307 YGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLG 383 (509)
T ss_pred cCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcC
Confidence 211 123689999998742 13333333 443 244555554444 3444444444321
Q ss_pred -cCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004550 419 -NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 455 (745)
Q Consensus 419 -~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 455 (745)
...-.....+..|....---+-++|+++++.|+..+.
T Consensus 384 ~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 384 LRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 1111223345566666555577999999999987654
No 364
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.75 E-value=3.3e-08 Score=116.42 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=113.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~ 291 (745)
..+|++ +.|-+..++++++.+-... +...+|||+|++||||+++|+++.+... ..+++.+||..
T Consensus 321 ~~~~~~--l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~ 386 (638)
T PRK11388 321 SHTFDH--MPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQL 386 (638)
T ss_pred cccccc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCC
Confidence 456777 7777877777755443222 2345699999999999999999998753 45788899976
Q ss_pred hhhhccchhHHHHHHHHHHHH----hhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc----
Q 004550 292 VLSKFVGETEKNIRDLFADAE----NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---- 363 (745)
Q Consensus 292 l~~~~~g~~e~~i~~~f~~a~----~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~---- 363 (745)
+-.. ..-.++|.... ...+..-.......||||||+.|.. .+...|+..++.-
T Consensus 387 ~~~~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~ 447 (638)
T PRK11388 387 YPDE------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-------------ELQSALLQVLKTGVITR 447 (638)
T ss_pred CChH------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEe
Confidence 5321 01112332110 0000000011124899999999852 2333444444321
Q ss_pred -cC----CCcEEEEEEeCCCCCCChhhhCCCCccc-------eEEecCCCHHHH----HHHHHHHHcccccc---CCCCC
Q 004550 364 -ES----LNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGR----LQILQIHTNKMKEN---SFLAP 424 (745)
Q Consensus 364 -~~----~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r----~~Il~~~~~~~~~~---~~l~~ 424 (745)
.. .-++.+|++|+..- ..+...|+|.. .+.|.+|...+| ..+++.++.++... ..-..
T Consensus 448 ~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 448 LDSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKID 524 (638)
T ss_pred CCCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 11 12578999998642 12222233311 345555655444 34555555443211 01122
Q ss_pred cccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004550 425 DVNLQELAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 425 ~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
+..+..|.+..-.-+-++|+++++.|+..
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 33455666665445778999999987753
No 365
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=2.1e-07 Score=106.92 Aligned_cols=205 Identities=13% Similarity=0.198 Sum_probs=113.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-Ec---c
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VN---G 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v~---~ 289 (745)
+-++++ +.|.++.++++ +.++..... +..+.+-++|+||||||||++++.+|+.+. ..+.. .+ +
T Consensus 80 P~~lde--l~~~~~ki~~l-~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~-~~~~Ew~npv~~ 147 (637)
T TIGR00602 80 PETQHE--LAVHKKKIEEV-ETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELG-IQVQEWSNPTLP 147 (637)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhh-hHHHHHhhhhhh
Confidence 567888 99999999988 777654322 223445699999999999999999999874 22111 11 1
Q ss_pred chh-------------hhhccchhHHHHHHHHHHHHhhccccC--CCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHH
Q 004550 290 PEV-------------LSKFVGETEKNIRDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 354 (745)
Q Consensus 290 ~~l-------------~~~~~g~~e~~i~~~f~~a~~~~~~~~--~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~ 354 (745)
... +..+ ....+.++.++..+.......+ ......||+|||++.+... + ...+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~---------~~~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D---------TRALH 216 (637)
T ss_pred cccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h---------HHHHH
Confidence 000 0111 1223445566665542211110 1123569999999987632 1 11233
Q ss_pred HHHH-hccCccCCCcEEEEEEeCC-CC--------------CCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccccc
Q 004550 355 QLLT-KIDGVESLNNVLLIGMTNR-KD--------------MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE 418 (745)
Q Consensus 355 ~LL~-~~d~~~~~~~v~vI~~tn~-~~--------------~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~ 418 (745)
.+|. ... ..+.+.+|++++. +. .+.+++++..|.. +|.|++.........|+..+.....
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 3333 211 1234445554442 11 1336777533443 6999999999977777666543211
Q ss_pred ----cCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 004550 419 ----NSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 419 ----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 449 (745)
...+.....+..++....| |++..+..
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~ 323 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSG----DIRSAINS 323 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCC----hHHHHHHH
Confidence 1111123356677775555 66554443
No 366
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.74 E-value=5.9e-08 Score=110.04 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=110.8
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccch
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 291 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~ 291 (745)
..+|++ +-|.+..++++.+.+-... +...+|||+|++||||+++|+++.+.. ...+++.+||..
T Consensus 208 ~~~f~~--iiG~S~~m~~~~~~i~~~A------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~ 273 (526)
T TIGR02329 208 RYRLDD--LLGASAPMEQVRALVRLYA------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGA 273 (526)
T ss_pred ccchhh--eeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEecccc
Confidence 467887 7888888888843332221 234579999999999999999999765 345788999986
Q ss_pred hhhhc-----cchhH--------HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHH
Q 004550 292 VLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 358 (745)
Q Consensus 292 l~~~~-----~g~~e--------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 358 (745)
+-... +|..+ ..-..+|+.|. ...||||||+.|.. .+...|+.
T Consensus 274 l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~-----------gGTLfLdeI~~Lp~-------------~~Q~~Ll~ 329 (526)
T TIGR02329 274 IAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH-----------RGTLFLDEIGEMPL-------------PLQTRLLR 329 (526)
T ss_pred CChhHHHHHhcCCcccccccccccccccchhhcC-----------CceEEecChHhCCH-------------HHHHHHHH
Confidence 63211 11100 00112233222 13899999999852 23344555
Q ss_pred hccCcc---------CCCcEEEEEEeCCCC--CC-----ChhhhCCCCccceEEecCCCHHH----HHHHHHHHHccccc
Q 004550 359 KIDGVE---------SLNNVLLIGMTNRKD--ML-----DEALLRPGRLEVQVEISLPDENG----RLQILQIHTNKMKE 418 (745)
Q Consensus 359 ~~d~~~---------~~~~v~vI~~tn~~~--~i-----d~al~r~gRf~~~i~i~~Pd~~~----r~~Il~~~~~~~~~ 418 (745)
.++.-. ...++.+|++||..- .+ .+.|.. |+. .+.+..|...+ ...++..++++...
T Consensus 330 ~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 406 (526)
T TIGR02329 330 VLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAA 406 (526)
T ss_pred HHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHH
Confidence 443211 112568999997642 12 222222 332 24444554444 44455555554432
Q ss_pred cCCCC-CcccHHH-------HHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 419 NSFLA-PDVNLQE-------LAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 419 ~~~l~-~~~~l~~-------la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
...+. ....+.. |.+..---+-++|+++++.++..+
T Consensus 407 ~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 407 ALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 11111 1111222 444443345689999998887543
No 367
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.7e-07 Score=96.94 Aligned_cols=158 Identities=21% Similarity=0.292 Sum_probs=103.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---E---------ccchhhh-----hccc------hhHHHHHHHHHHH
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---V---------NGPEVLS-----KFVG------ETEKNIRDLFADA 311 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~---v---------~~~~l~~-----~~~g------~~e~~i~~~f~~a 311 (745)
|..+||+||+|+||+++|+++|+.+-+..... . +-+++.- ...| -.-+.+|++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 44799999999999999999998874322100 0 0011110 0011 1234566666555
Q ss_pred HhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCc
Q 004550 312 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRL 391 (745)
Q Consensus 312 ~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf 391 (745)
... |..+ .-.|++||++|.+. ....|.||..++. ...++++|..|+.++.|.|.+++ |+
T Consensus 106 ~~~-p~~g---~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 106 ALT-PQYG---IAQVVIVDPADAIN-------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred hhC-cccC---CcEEEEeccHhhhC-------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh
Confidence 433 2212 23599999999984 3456778888884 44578888889999999999999 86
Q ss_pred cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHH
Q 004550 392 EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 443 (745)
Q Consensus 392 ~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 443 (745)
. .+.|+.|+.++..+.|... . .+..+...++..+.|-.+..+
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~--~-------~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ--G-------VSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc--C-------CChHHHHHHHHHcCCCHHHHH
Confidence 6 6889999998887777632 1 122334567777777655443
No 368
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.4e-07 Score=97.39 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=102.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-E--------------ccchhh--hhccc--hhHHHHHHHHHHHHhhc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V--------------NGPEVL--SKFVG--ETEKNIRDLFADAENDQ 315 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~-v--------------~~~~l~--~~~~g--~~e~~i~~~f~~a~~~~ 315 (745)
+..+||+||+|+||+++|+++|+.+.+..... - +-+++. ....| -.-..+|++-+.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 34799999999999999999999885421100 0 011111 00011 13446676655554332
Q ss_pred cccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceE
Q 004550 316 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 316 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 395 (745)
.. +.-.|++||++|.+. ....|.||..++. ...++++|.+|+.++.+.|.+++ |.. .+
T Consensus 104 -~~---g~~KV~iI~~a~~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~ 161 (325)
T PRK06871 104 -QQ---GGNKVVYIQGAERLT-------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TW 161 (325)
T ss_pred -cc---CCceEEEEechhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EE
Confidence 21 224599999999984 4456788988884 55688999999999999999998 865 78
Q ss_pred EecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCH
Q 004550 396 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 440 (745)
Q Consensus 396 ~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 440 (745)
.|++|+.++..+.|..... ..+.....++..+.|-.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS--------AEISEILTALRINYGRPL 198 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc--------cChHHHHHHHHHcCCCHH
Confidence 8999999988887775421 112234455566666443
No 369
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.74 E-value=1.1e-07 Score=91.64 Aligned_cols=141 Identities=20% Similarity=0.291 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---Ec-----------c
Q 004550 224 GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VN-----------G 289 (745)
Q Consensus 224 Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~---v~-----------~ 289 (745)
|.++.++.+ ..++..- +.|..+||+||+|+||+++|+++|+.+.+..... -. -
T Consensus 1 gq~~~~~~L-~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELL-KNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHH-HHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHH-HHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 556666666 5554432 2345699999999999999999999884332110 00 0
Q ss_pred chhhh--hc-c--chhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc
Q 004550 290 PEVLS--KF-V--GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 364 (745)
Q Consensus 290 ~~l~~--~~-~--g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~ 364 (745)
+++.- .. . .-..+.++++.+.+.... ..+...|++|||+|.+. ....+.||..|+.
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~----~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEe-- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSP----SEGKYKVIIIDEADKLT-------------EEAQNALLKTLEE-- 128 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-----TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHH----hcCCceEEEeehHhhhh-------------HHHHHHHHHHhcC--
Confidence 11110 00 0 012355666665543322 12345699999999884 4567888988884
Q ss_pred CCCcEEEEEEeCCCCCCChhhhCCCCccceEEecC
Q 004550 365 SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 399 (745)
Q Consensus 365 ~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~ 399 (745)
...++++|.+|+.++.|-|.+++ |.. .+.+++
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 44689999999999999999999 865 556554
No 370
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.74 E-value=8.1e-08 Score=109.78 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=111.7
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~ 290 (745)
....|++ +-|-+..++++++++-... ....+|||+|++||||+++|+++..... ..+++.+||.
T Consensus 199 ~~~~f~~--~ig~s~~~~~~~~~~~~~A------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca 264 (520)
T PRK10820 199 DDSAFSQ--IVAVSPKMRQVVEQARKLA------------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA 264 (520)
T ss_pred ccccccc--eeECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc
Confidence 4678888 7777777777755443222 1234699999999999999999876642 3577889998
Q ss_pred hhhhhc-----cchhH-------HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHH
Q 004550 291 EVLSKF-----VGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 358 (745)
Q Consensus 291 ~l~~~~-----~g~~e-------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 358 (745)
.+-... +|... +.-..+|+.|. ...|||||||.|.+. +...|+.
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~-----------~GtL~LdeI~~L~~~-------------~Q~~Ll~ 320 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQAN-----------GGSVLLDEIGEMSPR-------------MQAKLLR 320 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC-----------CCEEEEeChhhCCHH-------------HHHHHHH
Confidence 763211 11000 00011232222 238999999998532 2334444
Q ss_pred hccCc---------cCCCcEEEEEEeCCCC-------CCChhhhCCCCccceEEecCCCHHHHH----HHHHHHHccccc
Q 004550 359 KIDGV---------ESLNNVLLIGMTNRKD-------MLDEALLRPGRLEVQVEISLPDENGRL----QILQIHTNKMKE 418 (745)
Q Consensus 359 ~~d~~---------~~~~~v~vI~~tn~~~-------~id~al~r~gRf~~~i~i~~Pd~~~r~----~Il~~~~~~~~~ 418 (745)
.++.- ....++.+|++|+.+- .+.+.|.. |+. .+.+..|...+|. .+++.++++...
T Consensus 321 ~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~ 397 (520)
T PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFAD 397 (520)
T ss_pred HHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHH
Confidence 44321 1123678999887641 13344544 544 2555555554444 344444443221
Q ss_pred c----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 419 N----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 419 ~----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
. ..-.++..+..|....---+-++|++++..|+..+
T Consensus 398 ~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 398 EQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 1 11112223444554433346688999888887643
No 371
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3e-07 Score=97.49 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=90.9
Q ss_pred CCCceeeeeccCCCCChhHHHHHHHhhCCCC------e---------EEEeccccc-ccc---chhhHHHHHHHHHHHHh
Q 004550 532 GSPLVTCLLEGPSGSGKTALAATAGIDSDFP------F---------VKIISAESM-IGL---HESTKCAQIVKVFEDAY 592 (745)
Q Consensus 532 ~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~------~---------i~v~~~~~l-~g~---~~~~~~~~i~~~f~~a~ 592 (745)
.+.+..+||+||.|+||+++|+++|...-+. . -.-+.|+.. +.. ...-+.+.+|++-+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 3556789999999999999999999643211 0 000112221 110 11124567787766654
Q ss_pred c----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCC
Q 004550 593 K----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPT 668 (745)
Q Consensus 593 ~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~ 668 (745)
. +...|++||++|++. ....++|+..|+..++ ++++|-.|+.++.+-+. +++| +..+.|++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~----------~~AaNaLLKtLEEPp~---~t~fiL~t~~~~~lLpT-I~SR-Cq~~~~~~ 166 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN----------ESASNALLKTLEEPAP---NCLFLLVTHNQKRLLPT-IVSR-CQQWVVTP 166 (319)
T ss_pred hCcccCCceEEEecchhhhC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhChHH-HHhc-ceeEeCCC
Confidence 3 446899999999974 5667788888876543 45666667777666663 4455 77999999
Q ss_pred CCHHHHHHHHHHcc
Q 004550 669 LKTDDAKKVLKQLN 682 (745)
Q Consensus 669 ~~~~~~~~Il~~~~ 682 (745)
|+.+++.+.|...+
T Consensus 167 ~~~~~~~~~L~~~~ 180 (319)
T PRK06090 167 PSTAQAMQWLKGQG 180 (319)
T ss_pred CCHHHHHHHHHHcC
Confidence 99999999998753
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.73 E-value=5.6e-09 Score=93.94 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=56.1
Q ss_pred eeeeccCCCCChhHHHHHHHhhCCCCeEEEec-ccc----ccccchhhHHHHHHHHHHHHhc-CCCeEEEEeccchhhhc
Q 004550 537 TCLLEGPSGSGKTALAATAGIDSDFPFVKIIS-AES----MIGLHESTKCAQIVKVFEDAYK-SPLSIIILDDIERLLEY 610 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~-~~~----l~g~~~~~~~~~i~~~f~~a~~-~~~~il~lDEid~l~~~ 610 (745)
|+||+|+||+|||++|+++|...+..|.++.. ++. ++|........ ..|.-.+. --..|+++|||.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrap-- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAP-- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCC--
Confidence 68999999999999999999999999998854 333 34532211100 00100000 012599999998863
Q ss_pred CCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCCC
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVSF 650 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~~ 650 (745)
...+++|++.|..-. .-....+||||-|..+.
T Consensus 76 --------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~ 115 (131)
T PF07726_consen 76 --------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ 115 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--
T ss_pred --------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc
Confidence 567777887776521 11235789999997663
No 373
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=5.7e-08 Score=104.62 Aligned_cols=202 Identities=23% Similarity=0.219 Sum_probs=116.3
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc---CCCcEEEccc
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGP 290 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~---~~~~~~v~~~ 290 (745)
...+++ +-|-+...+++..++-. ++ +...+||++|++||||+++|+++..... ..+++.+||.
T Consensus 74 ~~~~~~--LIG~~~~~~~~~eqik~---~a---------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 74 SEALDD--LIGESPSLQELREQIKA---YA---------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred chhhhh--hhccCHHHHHHHHHHHh---hC---------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHH
Confidence 344555 66666667777444333 12 3456899999999999999999985442 3578889998
Q ss_pred hhhhh-------------ccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHH
Q 004550 291 EVLSK-------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 357 (745)
Q Consensus 291 ~l~~~-------------~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL 357 (745)
.+... |.| ....-..+|+.|..+ +||+|||+.+.+. ....|+
T Consensus 140 ~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG-----------tLfLDEI~~LP~~-------------~Q~kLl 194 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG-----------TLFLDEIHRLPPE-------------GQEKLL 194 (403)
T ss_pred HhCcCHHHHHHhccccceeec-ccCCcCchheecCCC-----------EEehhhhhhCCHh-------------HHHHHH
Confidence 76542 222 112223455555443 9999999998643 233455
Q ss_pred HhccC-----c----cCCCcEEEEEEeCCCCCCChhhhC-----CCCccceEEecCCCH--HHHHHHHHHHHccccccCC
Q 004550 358 TKIDG-----V----ESLNNVLLIGMTNRKDMLDEALLR-----PGRLEVQVEISLPDE--NGRLQILQIHTNKMKENSF 421 (745)
Q Consensus 358 ~~~d~-----~----~~~~~v~vI~~tn~~~~id~al~r-----~gRf~~~i~i~~Pd~--~~r~~Il~~~~~~~~~~~~ 421 (745)
..+|. + ....+|.+|++||- .++.+++. +-|+...|.+|+..+ +++..+++.+++.+.....
T Consensus 195 ~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~ 272 (403)
T COG1221 195 RVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLG 272 (403)
T ss_pred HHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcC
Confidence 55553 1 12346999999974 23333222 015555555554432 3344445555443322111
Q ss_pred CC--Cc--ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004550 422 LA--PD--VNLQELAARTKNYSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 422 l~--~~--~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 456 (745)
.. .. ..+..|-.+.---+-++++++++.++..+..
T Consensus 273 ~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 273 LPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 11 11 1233333333333678999999999987754
No 374
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=7.6e-08 Score=103.01 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=95.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--EE---cc-----------chhhh--hc------------------
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IV---NG-----------PEVLS--KF------------------ 296 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v---~~-----------~~l~~--~~------------------ 296 (745)
+-+.++||+||+|+||+++|+++|+.+.+.... .- .| +++.- ..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445689999999999999999999988543210 00 00 11100 00
Q ss_pred --cc---------hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccC
Q 004550 297 --VG---------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES 365 (745)
Q Consensus 297 --~g---------~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~ 365 (745)
.| -.-..+|++.+.+... +.. +...|++||++|.+. ....|.||..++ +.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~---~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EP 159 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVG-THR---GGARVVVLYPAEALN-------------VAAANALLKTLE--EP 159 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccC-Ccc---CCceEEEEechhhcC-------------HHHHHHHHHHhc--CC
Confidence 00 1224566665544322 222 234599999999984 445678888888 45
Q ss_pred CCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHHH
Q 004550 366 LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 412 (745)
Q Consensus 366 ~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~ 412 (745)
..++++|.+|++++.+.|.+++ |+. .+.|++|+.++..+.|...
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc
Confidence 6789999999999999999999 874 8999999999998888653
No 375
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.73 E-value=5.8e-08 Score=93.47 Aligned_cols=123 Identities=23% Similarity=0.207 Sum_probs=73.8
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCeEE---------------Eeccccc-cccch---hhHHHHHHHHHHHHhc
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK---------------IISAESM-IGLHE---STKCAQIVKVFEDAYK 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~---------------v~~~~~l-~g~~~---~~~~~~i~~~f~~a~~ 593 (745)
..+..+||+||+|+||+++|.++|+..-..-.. -..++.. +.... .-+.+.++++.+.+..
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 445668999999999999999999653221110 0111111 11111 1234678888777643
Q ss_pred ----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCC
Q 004550 594 ----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL 669 (745)
Q Consensus 594 ----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~ 669 (745)
+...|++|||+|.+ +....++|+..|+..+. .+.+|-+|+.++.+-+ -+++| +..++|+++
T Consensus 97 ~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEepp~---~~~fiL~t~~~~~il~-TI~SR-c~~i~~~~l 161 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEEPPE---NTYFILITNNPSKILP-TIRSR-CQVIRFRPL 161 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTTT---TEEEEEEES-GGGS-H-HHHTT-SEEEEE---
T ss_pred HHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcCCCC---CEEEEEEECChHHChH-HHHhh-ceEEecCCC
Confidence 45679999999997 47788899999987643 5556666676666655 33344 678888876
Q ss_pred C
Q 004550 670 K 670 (745)
Q Consensus 670 ~ 670 (745)
+
T Consensus 162 s 162 (162)
T PF13177_consen 162 S 162 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 376
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.73 E-value=1.2e-07 Score=107.77 Aligned_cols=170 Identities=18% Similarity=0.272 Sum_probs=109.3
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhHHHHH---HHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQI---VKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~~~~i---~~~f~~a~~~~~~il~ 600 (745)
...+++.|.+||||+++|+++...+ +.+|+.+++... ++|...+...... ...|. ....+.||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEE
Confidence 3568999999999999999998764 578999987653 1121100000000 01122 23357899
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC--------CCCCcEEEEEecCCCC--CCCcc----ccccccc-eEEE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP--------PKGKKLLVIGTTSEVS--FLDSV----GICDAFS-VTYH 665 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~--------~~~~~v~vI~ttn~~~--~l~~~----~l~~rf~-~~i~ 665 (745)
||||+.|. ..++..|+..++.-. .....+.+|++|+..- .+... .|..|+. ..|+
T Consensus 234 l~ei~~l~----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~ 303 (463)
T TIGR01818 234 LDEIGDMP----------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIH 303 (463)
T ss_pred EEchhhCC----------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceec
Confidence 99999984 455667777775421 0112566787776542 11211 2223443 5899
Q ss_pred cCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 666 VPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 666 ~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
+||+. .+|+..+++.. ..++++-+..+...-++|++|+|.++++.+...+..
T Consensus 304 lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 304 LPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 99999 78888887742 245666666666666699999999999999887643
No 377
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.73 E-value=6.8e-08 Score=109.41 Aligned_cols=199 Identities=20% Similarity=0.243 Sum_probs=110.2
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHH--------h--cCCC
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM--------L--NGME 283 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~--------l--~~~~ 283 (745)
...|++ +-|.+..++++.+.+.... ....+|||+|++||||+++|++|.+. . ...+
T Consensus 215 ~~~f~~--iiG~S~~m~~~~~~i~~~A------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~p 280 (538)
T PRK15424 215 RYVLGD--LLGQSPQMEQVRQTILLYA------------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHP 280 (538)
T ss_pred ccchhh--eeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCC
Confidence 356777 7888888888843332222 23457999999999999999999987 2 3457
Q ss_pred cEEEccchhhhhc-----cchhH--------HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchh
Q 004550 284 PKIVNGPEVLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 350 (745)
Q Consensus 284 ~~~v~~~~l~~~~-----~g~~e--------~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~ 350 (745)
++.+||..+-... +|..+ ..-..+|+.|.. ..||||||+.|..
T Consensus 281 fv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g-----------GTLfLdeI~~Lp~------------- 336 (538)
T PRK15424 281 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG-----------GTLFLDEIGEMPL------------- 336 (538)
T ss_pred eEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCC-----------CEEEEcChHhCCH-------------
Confidence 8889998763211 11100 000123333322 2899999999852
Q ss_pred HHHHHHHHhccCcc---------CCCcEEEEEEeCCCCCCChhhhCCCCccc-------eEEecCCCHHHH----HHHHH
Q 004550 351 SIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGR----LQILQ 410 (745)
Q Consensus 351 ~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r----~~Il~ 410 (745)
.+...|+..++.-. ...++.+|++||..- .. +...|+|.. .+.+..|...+| ..+++
T Consensus 337 ~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L--~~-~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~ 413 (538)
T PRK15424 337 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL--EE-DVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 413 (538)
T ss_pred HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH--HH-HHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHH
Confidence 23444555554211 123578999998641 11 112223321 345555655444 34555
Q ss_pred HHHccccc--cCCCCCccc------HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004550 411 IHTNKMKE--NSFLAPDVN------LQELAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 411 ~~~~~~~~--~~~l~~~~~------l~~la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
.++++... +..+.++.- +..|....---+-++|+++++.++..
T Consensus 414 ~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 414 SFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 55544211 111222110 12333333334668999999988764
No 378
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.72 E-value=4.8e-07 Score=90.62 Aligned_cols=187 Identities=12% Similarity=0.207 Sum_probs=121.2
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhC-C--CCeEEE-----eccc------------cc-------cccchhhHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDS-D--FPFVKI-----ISAE------------SM-------IGLHESTKCAQIV 585 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~-~--~~~i~v-----~~~~------------~l-------~g~~~~~~~~~i~ 585 (745)
.-..|+|+|||+|+||-+.+.++-++. | .+-+++ .+|. .. .|.+...- +.
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvV---iQ 108 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVV---IQ 108 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHH---HH
Confidence 345799999999999999888887654 2 111111 1111 10 34443322 33
Q ss_pred HHHHHHhc---------CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccc
Q 004550 586 KVFEDAYK---------SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGI 656 (745)
Q Consensus 586 ~~f~~a~~---------~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l 656 (745)
++.+...+ .+..+++|-|+|.|. ...+.+|...|+.... ..++++ .+|....+-+ .+
T Consensus 109 ellKevAQt~qie~~~qr~fKvvvi~ead~LT----------~dAQ~aLRRTMEkYs~-~~RlIl--~cns~SriIe-pI 174 (351)
T KOG2035|consen 109 ELLKEVAQTQQIETQGQRPFKVVVINEADELT----------RDAQHALRRTMEKYSS-NCRLIL--VCNSTSRIIE-PI 174 (351)
T ss_pred HHHHHHHhhcchhhccccceEEEEEechHhhh----------HHHHHHHHHHHHHHhc-CceEEE--EecCcccchh-HH
Confidence 44444322 356799999999984 5677788888887633 334333 3444443333 23
Q ss_pred ccccceEEEcCCCCHHHHHHHHHH----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccH
Q 004550 657 CDAFSVTYHVPTLKTDDAKKVLKQ----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKI 732 (745)
Q Consensus 657 ~~rf~~~i~~p~~~~~~~~~Il~~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~ 732 (745)
++ .+..+++|.|+.+|+..++.. .+...+.++..-+..-++++.|+++.++|.++...... .+++ ..|..
T Consensus 175 rS-RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~----~a~~-~~i~~ 248 (351)
T KOG2035|consen 175 RS-RCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPF----TANS-QVIPK 248 (351)
T ss_pred hh-heeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccc----cccC-CCCCC
Confidence 33 477899999999999888876 35666788877777788999999999999887653221 1222 45777
Q ss_pred hHHHHHHHHH
Q 004550 733 SHFYDCLQDM 742 (745)
Q Consensus 733 ~~~~~al~~~ 742 (745)
-||+-.++++
T Consensus 249 ~dWe~~i~e~ 258 (351)
T KOG2035|consen 249 PDWEIYIQEI 258 (351)
T ss_pred ccHHHHHHHH
Confidence 7887777654
No 379
>PRK08116 hypothetical protein; Validated
Probab=98.72 E-value=5.4e-08 Score=101.49 Aligned_cols=133 Identities=24% Similarity=0.311 Sum_probs=76.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccch----hHHHHHHHHHHHHhhccccCCCCCeEEE
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE----TEKNIRDLFADAENDQRTRGDQSDLHVI 327 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~----~e~~i~~~f~~a~~~~~~~~~~~~p~Il 327 (745)
.+.|++|+|+||||||+||.++++.+ .+..+++++.++++..+... ......++++.... ..+|
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~----------~dlL 182 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN----------ADLL 182 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC----------CCEE
Confidence 34689999999999999999999987 34566778888776644221 11112223332221 2499
Q ss_pred EEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC-CC----CChhhhCCCCc---cceEEecC
Q 004550 328 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK-DM----LDEALLRPGRL---EVQVEISL 399 (745)
Q Consensus 328 ~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~-~~----id~al~r~gRf---~~~i~i~~ 399 (745)
+|||+.... .++. ....|...++.... .+..+|.|||.+ +. ++.++.+ |+ ...|.++-
T Consensus 183 viDDlg~e~--------~t~~---~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g 248 (268)
T PRK08116 183 ILDDLGAER--------DTEW---AREKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEG 248 (268)
T ss_pred EEecccCCC--------CCHH---HHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeC
Confidence 999996421 1122 23334444443222 234577788764 33 4566665 63 33455555
Q ss_pred CCHHHHHHHHHHH
Q 004550 400 PDENGRLQILQIH 412 (745)
Q Consensus 400 Pd~~~r~~Il~~~ 412 (745)
|| -|..+.+..
T Consensus 249 ~d--~R~~~~~ek 259 (268)
T PRK08116 249 KS--YRKEIAKEK 259 (268)
T ss_pred cC--hhHHHHHHH
Confidence 55 355555543
No 380
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.71 E-value=4.2e-07 Score=105.19 Aligned_cols=127 Identities=12% Similarity=0.218 Sum_probs=81.1
Q ss_pred eEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC------------------CCCCcEEEEEecCCC--CCCCcccc
Q 004550 597 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP------------------PKGKKLLVIGTTSEV--SFLDSVGI 656 (745)
Q Consensus 597 ~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~------------------~~~~~v~vI~ttn~~--~~l~~~~l 656 (745)
.+|||||++.|. ...++.|+..|+.-. +...++.+|+++|.. ..+++ .+
T Consensus 219 GtL~Ldei~~L~----------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~-~l 287 (608)
T TIGR00764 219 GVLYIDEIKTMP----------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP-AL 287 (608)
T ss_pred CEEEEEChHhCC----------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH-HH
Confidence 456666666552 346667777664311 112367889888864 34565 56
Q ss_pred ccccc---eEEEcCCC---CHHHHHHHHHH----------ccCCCHHHHHHHHHHCC---------CCcHHHHHHHHHHH
Q 004550 657 CDAFS---VTYHVPTL---KTDDAKKVLKQ----------LNVFAEEDVDSASEALN---------DMPIKKLYMLIEMA 711 (745)
Q Consensus 657 ~~rf~---~~i~~p~~---~~~~~~~Il~~----------~~~~~~~d~~~~~~~~~---------~~~ir~ll~~l~~a 711 (745)
+.||+ ..+.|+.- +.+.+.++++. ...++++.+.+++..++ +...|++..+++.|
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 68998 77776543 34555444442 13467776766664322 56789999999998
Q ss_pred HccccCCchhhcccCCCCccHhHHHHHHHH
Q 004550 712 AQGEQGGAAEAIYSGREKIKISHFYDCLQD 741 (745)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~I~~~~~~~al~~ 741 (745)
...+.. ++...|+.+|+.+|++.
T Consensus 368 ~~iA~~-------~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 368 GDIAKS-------SGKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHHHHh-------cCCceecHHHHHHHHHH
Confidence 765533 35678999999999873
No 381
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.70 E-value=1.4e-07 Score=107.00 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=105.1
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhH---HHHHHHHHHHHhcCCCeEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTK---CAQIVKVFEDAYKSPLSIII 600 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~---~~~i~~~f~~a~~~~~~il~ 600 (745)
...+|++|++||||+++|+++...+ +.+|+.+++... ++|...+.. ...-...|..| ..++||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3579999999999999999998654 578999987753 112110000 00001122222 346899
Q ss_pred EeccchhhhcCCCCCcchHHHHHHHHHHHhcCC-----C---CCCcEEEEEecCCCC-------CCCcccccccc-ceEE
Q 004550 601 LDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP-----P---KGKKLLVIGTTSEVS-------FLDSVGICDAF-SVTY 664 (745)
Q Consensus 601 lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~-----~---~~~~v~vI~ttn~~~-------~l~~~~l~~rf-~~~i 664 (745)
|||||.|. ..++..|+..++.-. . ...++.+|+||+..- .+.+ .+..|+ ...|
T Consensus 243 ld~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~-~l~~~l~~~~i 311 (457)
T PRK11361 243 LDEIGEMP----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE-DLFYRLNVIHL 311 (457)
T ss_pred EechhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH-HHHHHhcccee
Confidence 99999984 456667777765421 0 112477888887642 1111 122233 3668
Q ss_pred EcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcccc
Q 004550 665 HVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 665 ~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~ 716 (745)
.+||+. .+|+..+++.+ ..++++.+..+...-++|++|+|.++++.|...+.
T Consensus 312 ~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 312 ILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred cCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 899998 67777665531 13555555555555569999999999999887654
No 382
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=5.3e-09 Score=94.08 Aligned_cols=113 Identities=25% Similarity=0.364 Sum_probs=55.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccc-hhh-hhccchhHHHHHHHHHHHHh-hccccCCCCCeEEEEEccch
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP-EVL-SKFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~-~l~-~~~~g~~e~~i~~~f~~a~~-~~~~~~~~~~p~Il~iDEid 333 (745)
++||.|+||+|||++|+++|+.+ +..+..|.+. +++ +...|.. +|+.... ..-..|..- ..|+++|||+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~-~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif-~~ill~DEiN 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL-GLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIF-TNILLADEIN 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT-T--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT--SSEEEEETGG
T ss_pred CEeeECCCccHHHHHHHHHHHHc-CCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhh-hceeeecccc
Confidence 58999999999999999999998 4556656543 222 1111110 0000000 000001000 1299999999
Q ss_pred hhhhcCCCCCCCCcchhHHHHHHHHhccC---------ccCCCcEEEEEEeCCCC-----CCChhhhCCCCcc
Q 004550 334 AICKSRGSTRDGTGVHDSIVNQLLTKIDG---------VESLNNVLLIGMTNRKD-----MLDEALLRPGRLE 392 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~LL~~~d~---------~~~~~~v~vI~~tn~~~-----~id~al~r~gRf~ 392 (745)
...++ ..+.||+.|.. ..-...++|||+.|+.+ .++++++. ||-
T Consensus 73 rappk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 73 RAPPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp GS-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred cCCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 87543 34556666542 12234689999999876 47888887 774
No 383
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=4e-07 Score=102.81 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=105.6
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc----------cccchh--
Q 004550 511 DRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM----------IGLHES-- 578 (745)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l----------~g~~~~-- 578 (745)
..++++..|+.... .+..+..-+||+||||||||++++.+|+++++.+..-..|..+ .+....
T Consensus 26 kKv~eV~~wl~~~~-----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~ 100 (519)
T PF03215_consen 26 KKVEEVRSWLEEMF-----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFD 100 (519)
T ss_pred HHHHHHHHHHHHHh-----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccc
Confidence 34555666665422 2233445688999999999999999999999887765444331 110000
Q ss_pred ---hHHHHHHHH-HHHHh-----------cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCC-cEEEE
Q 004550 579 ---TKCAQIVKV-FEDAY-----------KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGK-KLLVI 642 (745)
Q Consensus 579 ---~~~~~i~~~-f~~a~-----------~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~-~v~vI 642 (745)
......... +..++ ...+.||+++|+=.++.. -...+.+.|...+..- .. .+++|
T Consensus 101 ~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~~~f~~~L~~~l~~~---~~~PlV~i 171 (519)
T PF03215_consen 101 EFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DTSRFREALRQYLRSS---RCLPLVFI 171 (519)
T ss_pred cccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hHHHHHHHHHHHHHcC---CCCCEEEE
Confidence 011111111 11111 134679999998655411 1245555555555432 22 56666
Q ss_pred EecC--C-----CC--------CCCccccccccceEEEcCCCCH----HHHHHHHHHc-----c--CC-CHHHHHHHHHH
Q 004550 643 GTTS--E-----VS--------FLDSVGICDAFSVTYHVPTLKT----DDAKKVLKQL-----N--VF-AEEDVDSASEA 695 (745)
Q Consensus 643 ~ttn--~-----~~--------~l~~~~l~~rf~~~i~~p~~~~----~~~~~Il~~~-----~--~~-~~~d~~~~~~~ 695 (745)
.+-. . .. .+.+..+....-..|.|.|.+. ..+..|+... + .. ...++...+..
T Consensus 172 iSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~ 251 (519)
T PF03215_consen 172 ISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAE 251 (519)
T ss_pred EecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHH
Confidence 5511 0 00 1222222233457899999995 4455555543 1 11 22444445555
Q ss_pred CCCCcHHHHHHHHHHHHc
Q 004550 696 LNDMPIKKLYMLIEMAAQ 713 (745)
Q Consensus 696 ~~~~~ir~ll~~l~~a~~ 713 (745)
.+.||||.+++.+++...
T Consensus 252 ~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 252 SSNGDIRSAINNLQFWCL 269 (519)
T ss_pred hcCchHHHHHHHHHHHhc
Confidence 678999999999999887
No 384
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.69 E-value=1.3e-07 Score=106.50 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=107.8
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCC----------------------------CCeEEEecc---ccccccchhhHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSD----------------------------FPFVKIISA---ESMIGLHESTKCA 582 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~----------------------------~~~i~v~~~---~~l~g~~~~~~~~ 582 (745)
...+++|.||||||||++|+.++.... -||...... ..++|....
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~---- 285 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPI---- 285 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccc----
Confidence 346899999999999999999985321 112111100 001110000
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----C------CCCcEEEEEecCCCC--C
Q 004550 583 QIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS--F 650 (745)
Q Consensus 583 ~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vI~ttn~~~--~ 650 (745)
.-...+..| ...+|||||++.+ +..+++.|+..|+.-. . ...++.+|+++|.-. .
T Consensus 286 ~~pG~i~lA---~~GvLfLDEi~e~----------~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~ 352 (499)
T TIGR00368 286 PLPGEISLA---HNGVLFLDELPEF----------KRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGH 352 (499)
T ss_pred cchhhhhcc---CCCeEecCChhhC----------CHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCc
Confidence 001123333 3379999999875 4667777777775421 0 123678899998621 1
Q ss_pred CC--------------------ccccccccceEEEcCCCCHHHHH-------------HHHHH-------ccC-----C-
Q 004550 651 LD--------------------SVGICDAFSVTYHVPTLKTDDAK-------------KVLKQ-------LNV-----F- 684 (745)
Q Consensus 651 l~--------------------~~~l~~rf~~~i~~p~~~~~~~~-------------~Il~~-------~~~-----~- 684 (745)
.+ +..+.+|||..+.+++++.+++. .|.+. +.. .
T Consensus 353 ~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N 432 (499)
T TIGR00368 353 YGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKN 432 (499)
T ss_pred CCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 11 11345999999999998755442 22111 101 0
Q ss_pred ---C----------HHHHHHHHHHC---CCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 685 ---A----------EEDVDSASEAL---NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 685 ---~----------~~d~~~~~~~~---~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
. +.+...++... .+.+.|....++..|...|+- ++.+.|+.+|+.+|++
T Consensus 433 ~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL-------~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 433 ADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADL-------KEEKNISREHLAEAIE 497 (499)
T ss_pred ccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-------cCCCCCCHHHHHHHHh
Confidence 1 12222222211 257888888888888888764 4788999999999985
No 385
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.69 E-value=2.4e-07 Score=94.85 Aligned_cols=166 Identities=12% Similarity=0.168 Sum_probs=106.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC--e----EEEeccccccccchhhHHHHHHHHHHHHh-------cCCCeEE
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP--F----VKIISAESMIGLHESTKCAQIVKVFEDAY-------KSPLSII 599 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~--~----i~v~~~~~l~g~~~~~~~~~i~~~f~~a~-------~~~~~il 599 (745)
....|.|||||||+|||....+.|...-.+ + ..++.++. .|.. ....-.+.|..++ ..++..+
T Consensus 60 ~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-rgid---~vr~qi~~fast~~~~~fst~~~fKlv 135 (360)
T KOG0990|consen 60 PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-RGID---PVRQQIHLFASTQQPTTYSTHAAFKLV 135 (360)
T ss_pred CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-cCCc---chHHHHHHHHhhccceeccccCceeEE
Confidence 344599999999999999998888765443 1 11111111 0100 1111223444444 2378899
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHHHHH
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKKVLK 679 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~Il~ 679 (745)
+|||+|.+. ...+.+|...+.+... +..++-.+|.+..+.++. ++|+ ..+.|.+++..+....+.
T Consensus 136 ILDEADaMT----------~~AQnALRRviek~t~---n~rF~ii~n~~~ki~pa~-qsRc-trfrf~pl~~~~~~~r~s 200 (360)
T KOG0990|consen 136 ILDEADAMT----------RDAQNALRRVIEKYTA---NTRFATISNPPQKIHPAQ-QSRC-TRFRFAPLTMAQQTERQS 200 (360)
T ss_pred EecchhHhh----------HHHHHHHHHHHHHhcc---ceEEEEeccChhhcCchh-hccc-ccCCCCCCChhhhhhHHH
Confidence 999999974 5666777766665532 334445678888888854 3554 478899998555554444
Q ss_pred H----ccCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccC
Q 004550 680 Q----LNVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 680 ~----~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~ 717 (745)
+ .......+......+.+.|++|.+++.++.....-..
T Consensus 201 hi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~ 242 (360)
T KOG0990|consen 201 HIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVME 242 (360)
T ss_pred HHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 4 3444555666667778899999999999987665443
No 386
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=1.3e-06 Score=97.82 Aligned_cols=204 Identities=18% Similarity=0.261 Sum_probs=126.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhc---------CCCcEEEccchhhh----------hccchhHH------HHHHHHHHH
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEVLS----------KFVGETEK------NIRDLFADA 311 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~---------~~~~~~v~~~~l~~----------~~~g~~e~------~i~~~f~~a 311 (745)
.+.++|-||||||..++.+.+.|. ...++.+|+-.+.+ .+.|+... .+..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~-- 501 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT-- 501 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc--
Confidence 588999999999999999998763 22455677765543 33333211 1222222
Q ss_pred HhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhC--CC
Q 004550 312 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLR--PG 389 (745)
Q Consensus 312 ~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r--~g 389 (745)
.......++||+|||+|.|+.+. +.++..+.+..- ....+++||+..|..+....-|.. ..
T Consensus 502 -----~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS 564 (767)
T KOG1514|consen 502 -----VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS 564 (767)
T ss_pred -----cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh
Confidence 12233458999999999998543 345555544422 334578888888876543222210 11
Q ss_pred Ccc-ceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhhccccCCCC
Q 004550 390 RLE-VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG--AELEGVAKSAVSFALNRQLSMDDLTK 466 (745)
Q Consensus 390 Rf~-~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg--~dl~~l~~~A~~~a~~r~~~~~~~~~ 466 (745)
|++ ..|.|.+++.++..+|+...++... .......+-+|+.....+| +....+|+.|...|-.+....
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~----~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~----- 635 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARLKGLD----AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG----- 635 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhhcchh----hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc-----
Confidence 332 2588999999999999999987762 1122223444444444444 233457888888887765411
Q ss_pred CCcccCceeehhhHHHHHHhhhc
Q 004550 467 PVDEESIKVTMDDFLHALYEIVP 489 (745)
Q Consensus 467 ~~~~~~~~it~~df~~al~~~~p 489 (745)
.......++.-|+.+|+.+...
T Consensus 636 -k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 636 -KLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred -cccccceeehHHHHHHHHHHhh
Confidence 2234457899999999988743
No 387
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=3.9e-07 Score=97.83 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=104.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEE---------------Eccchhhh--hcc---chhHHHHHHHHHHHHhh
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLS--KFV---GETEKNIRDLFADAEND 314 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~---------------v~~~~l~~--~~~---g~~e~~i~~~f~~a~~~ 314 (745)
+..+||+||+|+||+++|+++|+.+.+..... -+-+++.- ... .-.-+.+|++-+.+...
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 45799999999999999999999884421100 00111110 000 11244566666555433
Q ss_pred ccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccce
Q 004550 315 QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 394 (745)
Q Consensus 315 ~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~ 394 (745)
. . .+...|++||++|.+. ....|.||..+++ ...+.++|..|+.++.+.|.+++ |.. .
T Consensus 104 ~-~---~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 104 A-R---LGGAKVVWLPDAALLT-------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred c-c---cCCceEEEEcchHhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 2 2 1234599999999984 4466789999884 55689999999999999999999 877 5
Q ss_pred EEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHH
Q 004550 395 VEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 442 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 442 (745)
+.+++|+.++..+.|.... . . +......++..+.|-.+.-
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~----~-~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---T----M-SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---C----C-CHHHHHHHHHHcCCCHHHH
Confidence 7999999888877775321 1 1 2223556677777755443
No 388
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=2.1e-07 Score=104.80 Aligned_cols=48 Identities=31% Similarity=0.607 Sum_probs=35.7
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 279 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l 279 (745)
..+|++ |-|.+..++.+ ..++ ....+++|+||||||||++++.++..+
T Consensus 188 ~~d~~d--v~Gq~~~~~al-~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 188 DLDLKD--IKGQQHAKRAL-EIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCCHHH--hcCcHHHHhhh-hhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 347777 88887765554 2221 234579999999999999999999765
No 389
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.64 E-value=5.4e-08 Score=94.02 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=61.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhh-----ccchhH-------HHHHHHHHHHHhhccccCC
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK-----FVGETE-------KNIRDLFADAENDQRTRGD 320 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~-----~~g~~e-------~~i~~~f~~a~~~~~~~~~ 320 (745)
+.+|||+|++||||+++||+|.+... ..+++.+||+.+-.. .+|... ..-..+|+.|...
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G------ 95 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG------ 95 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS------
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce------
Confidence 36799999999999999999998653 457889999876332 122110 0112455555544
Q ss_pred CCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC-----cc----CCCcEEEEEEeCCC
Q 004550 321 QSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VE----SLNNVLLIGMTNRK 378 (745)
Q Consensus 321 ~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----~~----~~~~v~vI~~tn~~ 378 (745)
+||||||+.|.+ .+...|+..++. +. ...++.+|++|+..
T Consensus 96 -----tL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 96 -----TLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp -----EEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred -----EEeecchhhhHH-------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 999999999853 233444444431 11 12379999999863
No 390
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.64 E-value=1.2e-07 Score=106.80 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=104.8
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccc--------cccchhhHH---HHHHHHHHHHhcCCCeEE
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM--------IGLHESTKC---AQIVKVFEDAYKSPLSII 599 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l--------~g~~~~~~~---~~i~~~f~~a~~~~~~il 599 (745)
....++++|.+||||+++|+++...+ +.||+.+++.... .|...+... ..-...|. ....++|
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl 237 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTL 237 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEE
Confidence 34678999999999999999998654 5789999887531 111000000 00000111 2335789
Q ss_pred EEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCC--------CCCcEEEEEecCCCCCCCcccccccc---------ce
Q 004550 600 ILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPP--------KGKKLLVIGTTSEVSFLDSVGICDAF---------SV 662 (745)
Q Consensus 600 ~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~--------~~~~v~vI~ttn~~~~l~~~~l~~rf---------~~ 662 (745)
|||||+.|. ...+..|+..++.-.. ...++.+|+||+..- ......++| ..
T Consensus 238 ~ldei~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 238 FLDEIGDIS----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--AAEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred EEeccccCC----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--HHHHHcCCchHHHHHHhccc
Confidence 999999985 4456667776654210 012456787776642 111111333 36
Q ss_pred EEEcCCCC--HHHHHHHHHHc------------cCCCHHHHHHHHHHCCCCcHHHHHHHHHHHHcccc
Q 004550 663 TYHVPTLK--TDDAKKVLKQL------------NVFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQ 716 (745)
Q Consensus 663 ~i~~p~~~--~~~~~~Il~~~------------~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~ 716 (745)
.+.+||+. .+|+..+++.. ..++++.+..+...-++|++|+|.++++.+...+.
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~ 373 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLT 373 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899998 56776666642 12566656666666669999999999999886553
No 391
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.64 E-value=1.5e-07 Score=107.38 Aligned_cols=184 Identities=9% Similarity=0.147 Sum_probs=108.5
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCC-CeEEEecccc--ccccchhh--HHH-HHH-HHHHHHhcCCCeEEEEeccchhh
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDF-PFVKIISAES--MIGLHEST--KCA-QIV-KVFEDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~-~~i~v~~~~~--l~g~~~~~--~~~-~i~-~~f~~a~~~~~~il~lDEid~l~ 608 (745)
.++||+|+||||||++|++++..+.. .|+....+.. +.+..... ..+ .++ ..+. .....+++|||++.+-
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~ 313 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKMD 313 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhCC
Confidence 58999999999999999999987643 2332111110 11100000 000 000 0111 1234799999999973
Q ss_pred hcCCCCCcchHHHHHHHHHHHhcCC----C------CCCcEEEEEecCCCC-------------CCCccccccccceEEE
Q 004550 609 EYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS-------------FLDSVGICDAFSVTYH 665 (745)
Q Consensus 609 ~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vI~ttn~~~-------------~l~~~~l~~rf~~~i~ 665 (745)
...++.|++.|+.-. . -..++.||||+|... .+.+ .+.+|||..+.
T Consensus 314 ----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~-~lLsRFdLi~~ 382 (509)
T smart00350 314 ----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA-PILSRFDLLFV 382 (509)
T ss_pred ----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh-HHhCceeeEEE
Confidence 566777887775421 0 123678999999753 2333 45599997655
Q ss_pred c-CCCCHHHHHHHHHHc--------------------------------c---CCCHHHHHHHHHHC-------------
Q 004550 666 V-PTLKTDDAKKVLKQL--------------------------------N---VFAEEDVDSASEAL------------- 696 (745)
Q Consensus 666 ~-p~~~~~~~~~Il~~~--------------------------------~---~~~~~d~~~~~~~~------------- 696 (745)
+ ..++.+.-.+|+++. . ...++++.+++..+
T Consensus 383 ~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~ 462 (509)
T smart00350 383 VLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEA 462 (509)
T ss_pred ecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccccc
Confidence 5 556655555555541 0 01122222222110
Q ss_pred ---CCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 697 ---NDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 697 ---~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
.+.++|.++.+++.|...|.- .++..|+.+|+.+|+.
T Consensus 463 ~~~~~~t~R~l~sliRla~A~A~l-------~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 463 RSSIPITVRQLESIIRLSEAHAKM-------RLSDVVEEADVEEAIR 502 (509)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHH-------cCCCccCHHHHHHHHH
Confidence 134788999999888877754 5788999999999976
No 392
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.63 E-value=4.2e-07 Score=95.75 Aligned_cols=63 Identities=30% Similarity=0.441 Sum_probs=40.5
Q ss_pred CccccHHHHHHH--HHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc-CCCcEEEccchhhh
Q 004550 221 GIGGLSAEFADI--FRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLS 294 (745)
Q Consensus 221 ~igGl~~~~~~i--~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~-~~~~~~v~~~~l~~ 294 (745)
|+.|+.++-+.. +-+++.. |--..+++||.||||||||.||-++|++|. +.||..++++++.+
T Consensus 25 GlVGQ~~AReAagiiv~mIk~-----------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKE-----------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHT-----------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccChHHHHHHHHHHHHHHhc-----------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 688887764443 1122211 223568999999999999999999999995 45677777877765
No 393
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=2.5e-07 Score=98.70 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=107.4
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEcc----
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG---- 289 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~---- 289 (745)
.+.|.- +.|.+....-+...++ .| .-.|+|+-|+.||||||++|+++..|....++. .|
T Consensus 13 ~~pf~a--ivGqd~lk~aL~l~av-----~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~c 75 (423)
T COG1239 13 NLPFTA--IVGQDPLKLALGLNAV-----DP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNC 75 (423)
T ss_pred ccchhh--hcCchHHHHHHhhhhc-----cc---------ccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCC
Confidence 577777 9999987655533322 33 236899999999999999999999985333221 11
Q ss_pred ---------ch-------------------hhhhccchhHHH------HHHHHH-HHHhhccccCCCCCeEEEEEccchh
Q 004550 290 ---------PE-------------------VLSKFVGETEKN------IRDLFA-DAENDQRTRGDQSDLHVIIFDEIDA 334 (745)
Q Consensus 290 ---------~~-------------------l~~~~~g~~e~~------i~~~f~-~a~~~~~~~~~~~~p~Il~iDEid~ 334 (745)
.+ ++..=.|.++.+ +.+..+ --+..+|..-....-.|++|||+..
T Consensus 76 dP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnl 155 (423)
T COG1239 76 DPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNL 155 (423)
T ss_pred CCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccc
Confidence 11 111112233331 111111 0011111111111223999999998
Q ss_pred hhhcCCCCCCCCcchhHHHHHHHHhccC-----------ccCCCcEEEEEEeCCCC-CCChhhhCCCCccceEEecCC-C
Q 004550 335 ICKSRGSTRDGTGVHDSIVNQLLTKIDG-----------VESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLP-D 401 (745)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~LL~~~d~-----------~~~~~~v~vI~~tn~~~-~id~al~r~gRf~~~i~i~~P-d 401 (745)
| .+.+++.||+.+.. +....++++|||+|+.+ .|-|.|+. ||...+.+..| +
T Consensus 156 L-------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~ 220 (423)
T COG1239 156 L-------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLD 220 (423)
T ss_pred c-------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCC
Confidence 7 46678888877643 23345799999999864 58888888 99999999877 5
Q ss_pred HHHHHHHHHHHHc
Q 004550 402 ENGRLQILQIHTN 414 (745)
Q Consensus 402 ~~~r~~Il~~~~~ 414 (745)
.++|.+|.+....
T Consensus 221 ~~~rv~Ii~r~~~ 233 (423)
T COG1239 221 LEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 7899999987654
No 394
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=1e-07 Score=99.45 Aligned_cols=148 Identities=17% Similarity=0.246 Sum_probs=86.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--EEccchhhhhccchhHHHHHHHHHHHHhh------ccccCCCCCe
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPEVLSKFVGETEKNIRDLFADAEND------QRTRGDQSDL 324 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~~l~~~~~g~~e~~i~~~f~~a~~~------~~~~~~~~~p 324 (745)
...+++||+||+|||||++++.+-+.+....+. .++.+.. .+...++.+.+..... .|. ....
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~---~~k~ 101 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPP---GGKK 101 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEE---SSSE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCC---CCcE
Confidence 345689999999999999999888776544322 2333321 2233444433322111 111 2335
Q ss_pred EEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhc---cC----ccCCCcEEEEEEeCCCC---CCChhhhCCCCccce
Q 004550 325 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI---DG----VESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQ 394 (745)
Q Consensus 325 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~---d~----~~~~~~v~vI~~tn~~~---~id~al~r~gRf~~~ 394 (745)
.|+||||++.-.+...+. ...-+++.|+++.- |. ...-.++.+||++++.. .+++.+.| .|. .
T Consensus 102 lv~fiDDlN~p~~d~ygt----q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i 174 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGT----QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-I 174 (272)
T ss_dssp EEEEEETTT-S---TTS------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-E
T ss_pred EEEEecccCCCCCCCCCC----cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-E
Confidence 699999999876555432 22346677776552 11 11224688999988643 47888988 665 7
Q ss_pred EEecCCCHHHHHHHHHHHHccc
Q 004550 395 VEISLPDENGRLQILQIHTNKM 416 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il~~~~~~~ 416 (745)
+.++.|+.+....|+...+...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 8999999999999998877644
No 395
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.61 E-value=4.4e-07 Score=95.59 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=54.8
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC-------CCCcc----ccccccceEE
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS-------FLDSV----GICDAFSVTY 664 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~-------~l~~~----~l~~rf~~~i 664 (745)
|.||||||++.|- -.-...|...|+. .... +||.+||+-- ...|. .+.+| ..++
T Consensus 279 pGVLFIDEvHmLD----------iEcFsfLnralEs---~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDR-llII 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLD----------IECFSFLNRALES---ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDR-LLII 343 (398)
T ss_dssp E-EEEEESGGGSB----------HHHHHHHHHHHTS---TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTT-EEEE
T ss_pred cceEEecchhhcc----------HHHHHHHHHHhcC---CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhh-cEEE
Confidence 7899999998873 2334444444443 2234 5555777532 11222 33344 3578
Q ss_pred EcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCC-CCcHHHHHHHHHHHH
Q 004550 665 HVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAA 712 (745)
Q Consensus 665 ~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a~ 712 (745)
...||+.+|+.+|++.. +...+++...++..+. ..++|-++.++..|.
T Consensus 344 ~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 344 RTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp EE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred ECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 89999999999999963 3334444444444444 778888888877664
No 396
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.60 E-value=2.6e-07 Score=95.39 Aligned_cols=167 Identities=20% Similarity=0.242 Sum_probs=111.7
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccc--------ccccchhhHHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES--------MIGLHESTKCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~--------l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
..+|+.|.+||||-.+|++....+ ..||+.++|+.. ++|+..+.. --..+|+.|.+ .-+|+|||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~--gk~GffE~Ang---GTVlLDeI 302 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDE--GKKGFFEQANG---GTVLLDEI 302 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCC--CccchhhhccC---CeEEeehh
Confidence 357999999999999999987654 689999998764 466555422 23468888876 45999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcC-----CC---CCCcEEEEEecCCC--CCCCccccc----cccc-eEEEcCCC
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRL-----PP---KGKKLLVIGTTSEV--SFLDSVGIC----DAFS-VTYHVPTL 669 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~-----~~---~~~~v~vI~ttn~~--~~l~~~~l~----~rf~-~~i~~p~~ 669 (745)
..+ |-.++..|+.+++.- .+ ..-.|-||+||..+ ++.+.-.+| -|.+ ..+++||+
T Consensus 303 gEm----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpL 372 (511)
T COG3283 303 GEM----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPL 372 (511)
T ss_pred hhc----------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcc
Confidence 765 567778888888652 11 12368899998654 222222222 2333 45888988
Q ss_pred C--HHHHHHHHHH--------cc---CCCHHHHHHHHHHC-CCCcHHHHHHHHHHHHccccC
Q 004550 670 K--TDDAKKVLKQ--------LN---VFAEEDVDSASEAL-NDMPIKKLYMLIEMAAQGEQG 717 (745)
Q Consensus 670 ~--~~~~~~Il~~--------~~---~~~~~d~~~~~~~~-~~~~ir~ll~~l~~a~~~~~~ 717 (745)
. ..++.-+.+. .+ ...+++....+.++ ++|++|+|-+.+.+|....++
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcc
Confidence 7 4555554443 11 23345555555555 499999999999999877654
No 397
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.60 E-value=9e-07 Score=94.29 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=42.9
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCC-CCCceEEEEcCCCChHHHHHHHHHHHhcCC------CcEEEcc
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNGM------EPKIVNG 289 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lar~la~~l~~~------~~~~v~~ 289 (745)
+-|+++.+++++ +.+.... .|. ...+.++|+||||||||++|+++++.++.. +++.+.+
T Consensus 53 ~~G~~~~i~~lv-~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 53 FFGMEEAIERFV-NYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccCcHHHHHHHH-HHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 999999999985 3443321 122 234678999999999999999999998542 4555555
No 398
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=6.8e-07 Score=100.25 Aligned_cols=124 Identities=25% Similarity=0.388 Sum_probs=75.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCc-EEEccchhh------------------hhccchhHHH--------HH
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-KIVNGPEVL------------------SKFVGETEKN--------IR 305 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~-~~v~~~~l~------------------~~~~g~~e~~--------i~ 305 (745)
....+++|+||||+|||++++.++..+..... ..+.+..+. +.....+... -.
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 34567999999999999999999976631110 111111111 1111111110 11
Q ss_pred HHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc-----------CCCcEEEEEE
Q 004550 306 DLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGM 374 (745)
Q Consensus 306 ~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~ 374 (745)
..+..|.. .+||+||++.+. ..++..|+..|+.-. ...++.+|++
T Consensus 288 G~l~~A~g-----------GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 288 GEISLAHN-----------GVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred hHhhhccC-----------CEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 22333332 299999998763 345555665553211 2347899999
Q ss_pred eCCCC---------------------CCChhhhCCCCccceEEecCCCH
Q 004550 375 TNRKD---------------------MLDEALLRPGRLEVQVEISLPDE 402 (745)
Q Consensus 375 tn~~~---------------------~id~al~r~gRf~~~i~i~~Pd~ 402 (745)
+|+.. .++.+++. ||+.+++++.|+.
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~ 390 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPP 390 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCH
Confidence 99853 36778888 9999999998854
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=6.3e-07 Score=95.87 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCceeeeeccCCCCChhHHHHHHHhhCCC-------------------------CeEEEecccc---ccccc-hhhHHH
Q 004550 532 GSPLVTCLLEGPSGSGKTALAATAGIDSDF-------------------------PFVKIISAES---MIGLH-ESTKCA 582 (745)
Q Consensus 532 ~~~~~~~Ll~GppGtGKT~la~~lA~~~~~-------------------------~~i~v~~~~~---l~g~~-~~~~~~ 582 (745)
.+.+..+||+||+|+|||++|+.+|....+ .|+.+ .|+. --|+. ..-+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~-~p~~~~~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEI-TPLSDEPENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEE-ecccccccccccCCCcCHH
Confidence 356678999999999999999999976422 12222 1110 00100 012467
Q ss_pred HHHHHHHHHhc----CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcccccc
Q 004550 583 QIVKVFEDAYK----SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICD 658 (745)
Q Consensus 583 ~i~~~f~~a~~----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~ 658 (745)
.+|++.+.+.. +...|+++|+++.+- ....+.|+..|+..+. . +.+|.+|+.++.+.+. + .
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld----------~~a~naLLk~LEep~~--~-~~~Ilvth~~~~ll~t-i-~ 161 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMN----------LQAANSLLKVLEEPPP--Q-VVFLLVSHAADKVLPT-I-K 161 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCC----------HHHHHHHHHHHHhCcC--C-CEEEEEeCChHhChHH-H-H
Confidence 88988888754 446799999999873 5566777778877642 2 3444477777666553 3 3
Q ss_pred ccceEEEcCCCCHHHHHHHHHHcc
Q 004550 659 AFSVTYHVPTLKTDDAKKVLKQLN 682 (745)
Q Consensus 659 rf~~~i~~p~~~~~~~~~Il~~~~ 682 (745)
+++..+.|++++.+++.+.|++.+
T Consensus 162 SRc~~~~~~~~~~~~~~~~L~~~~ 185 (325)
T PRK08699 162 SRCRKMVLPAPSHEEALAYLRERG 185 (325)
T ss_pred HHhhhhcCCCCCHHHHHHHHHhcC
Confidence 457899999999999998887653
No 400
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.58 E-value=4e-07 Score=99.95 Aligned_cols=195 Identities=24% Similarity=0.270 Sum_probs=111.4
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhh----
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK---- 295 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~---- 295 (745)
+.|-....+++ ++.+..- .+...+||++|++||||-++||+|.+... +.+|+.+||..+-..
T Consensus 143 liG~S~am~~l-~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 143 LVGESPAMQQL-RRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred ceecCHHHHHH-HHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 77777888887 3333221 12345799999999999999999998763 458889999765432
Q ss_pred -ccc--------hhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccC----
Q 004550 296 -FVG--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG---- 362 (745)
Q Consensus 296 -~~g--------~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~---- 362 (745)
.+| ... .-...|+.|..+ .||+|||..+.. .+...||..+..
T Consensus 211 ELFGhekGAFTGA~~-~r~G~fE~A~GG-----------TLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~ 265 (464)
T COG2204 211 ELFGHEKGAFTGAIT-RRIGRFEQANGG-----------TLFLDEIGEMPL-------------ELQVKLLRVLQEREFE 265 (464)
T ss_pred HhhcccccCcCCccc-ccCcceeEcCCc-----------eEEeeccccCCH-------------HHHHHHHHHHHcCeeE
Confidence 111 111 112244444433 999999998742 233445554431
Q ss_pred -cc----CCCcEEEEEEeCCC--CC-----CChhhhCCCCccceEEecCCCHHHHHH----HHHHHHccccccC-CCCCc
Q 004550 363 -VE----SLNNVLLIGMTNRK--DM-----LDEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKMKENS-FLAPD 425 (745)
Q Consensus 363 -~~----~~~~v~vI~~tn~~--~~-----id~al~r~gRf~~~i~i~~Pd~~~r~~----Il~~~~~~~~~~~-~l~~~ 425 (745)
+- -.-++.||++||+. +. +-+.|-- |+. ++.+..|...+|.+ +++.+++++.... .-...
T Consensus 266 rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~ 342 (464)
T COG2204 266 RVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKG 342 (464)
T ss_pred ecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11 12369999999974 11 1222222 443 46666776555543 4555554433221 11223
Q ss_pred ccHHH---HHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004550 426 VNLQE---LAARTKNYSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 426 ~~l~~---la~~t~g~sg~dl~~l~~~A~~~a~~ 456 (745)
..-+. |..+.---+-++|+++++.++..+-.
T Consensus 343 ~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 343 FSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 33333 33333223458999999988865543
No 401
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.56 E-value=7.7e-07 Score=99.80 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=107.7
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCC----CeEEEe------c---------------cc------cccccchhhHHH
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDF----PFVKII------S---------------AE------SMIGLHESTKCA 582 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~----~~i~v~------~---------------~~------~l~g~~~~~~~~ 582 (745)
...+++|.||||||||++++.++....- -.+.+. + |. .++|... .
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~----~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA----I 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc----e
Confidence 3468999999999999999999854310 011110 0 00 0122100 0
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC----C------CCCcEEEEEecCCCC--C
Q 004550 583 QIVKVFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS--F 650 (745)
Q Consensus 583 ~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vI~ttn~~~--~ 650 (745)
.-...+..|.. .+|||||++.+ ...+++.|++.|+.-. . ...++.+|+|+|... .
T Consensus 285 ~~pG~l~~A~g---GvLfLDEi~e~----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 285 PGPGEISLAHN---GVLFLDELPEF----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred ehhhHhhhccC---CEEecCCchhC----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 01123444433 79999999775 4677888887775421 1 124689999999753 1
Q ss_pred CC------------------ccccccccceEEEcCCCCHHHHHH----------HHHH---------------ccCCCHH
Q 004550 651 LD------------------SVGICDAFSVTYHVPTLKTDDAKK----------VLKQ---------------LNVFAEE 687 (745)
Q Consensus 651 l~------------------~~~l~~rf~~~i~~p~~~~~~~~~----------Il~~---------------~~~~~~~ 687 (745)
.+ +..+.+|||..+.+++++.+++.+ |.++ .......
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 11 113458999999999885332211 1111 0011222
Q ss_pred HHHHHH----------HH---CCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 688 DVDSAS----------EA---LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 688 d~~~~~----------~~---~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
++.+.| .. ..+.+.|....+++.|+..|+- +|++.|+.+|+.+|+.
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL-------~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI-------DQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHH
Confidence 222211 11 1156788888888888887754 5889999999999986
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=1.7e-06 Score=98.24 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=54.0
Q ss_pred HHHhcCCCCceeeeeccCCCCChhHHHHHHHhh---CCCCeEEEecccc---c------cccchh---------------
Q 004550 526 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAES---M------IGLHES--------------- 578 (745)
Q Consensus 526 ~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~---~~~~~i~v~~~~~---l------~g~~~~--------------- 578 (745)
.+...+..+...+|+.||||+|||+++..++.. .|-+.+.+..-|. + +|....
T Consensus 254 ~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p 333 (484)
T TIGR02655 254 EMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYP 333 (484)
T ss_pred HHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccc
Confidence 334556677788999999999999999888753 3445555532221 1 221110
Q ss_pred ---hHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 004550 579 ---TKCAQIVKVFEDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 579 ---~~~~~i~~~f~~a~~~~~~il~lDEid~l~ 608 (745)
.....+..+.+.+....|.+|+||-+..+.
T Consensus 334 ~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 334 ESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred ccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 113456667777777788999999998775
No 403
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.54 E-value=3.9e-07 Score=92.90 Aligned_cols=183 Identities=18% Similarity=0.282 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCC--cEEEcc-chhh----hhc
Q 004550 224 GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME--PKIVNG-PEVL----SKF 296 (745)
Q Consensus 224 Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~--~~~v~~-~~l~----~~~ 296 (745)
|-++++++| .+.+.. .+...++|+||.|+|||++++.+.+.+.... ..++.. .... ...
T Consensus 3 gR~~el~~l-~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 3 GREKELEKL-KELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-HHHHHHH-HHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 567777777 443322 2346799999999999999999999884221 111111 0000 000
Q ss_pred ------------------------------cchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhh-hcCCCCCCC
Q 004550 297 ------------------------------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC-KSRGSTRDG 345 (745)
Q Consensus 297 ------------------------------~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~-~~~~~~~~~ 345 (745)
.......+..+++....... ..||+|||++.+. ...
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-------~~iiviDe~~~~~~~~~------ 135 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGK-------KVIIVIDEFQYLAIASE------ 135 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHC-------CEEEEEETGGGGGBCTT------
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCC-------cEEEEEecHHHHhhccc------
Confidence 01123445555555554432 2699999999997 211
Q ss_pred CcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCC------ChhhhCCCCccceEEecCCCHHHHHHHHHHHHcccccc
Q 004550 346 TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDML------DEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 419 (745)
Q Consensus 346 ~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~i------d~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~ 419 (745)
....++..|...++......++.+|.++...... ...+ -+|+.. +.+++.+.++..++++...+.. .+
T Consensus 136 --~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~ 209 (234)
T PF01637_consen 136 --EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKEL-IK 209 (234)
T ss_dssp --TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC---
T ss_pred --chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHh-hc
Confidence 1345566666666654455666666555442211 1222 247776 9999999999999999887665 21
Q ss_pred CCCCCcccHHHHHHHcCCCCH
Q 004550 420 SFLAPDVNLQELAARTKNYSG 440 (745)
Q Consensus 420 ~~l~~~~~l~~la~~t~g~sg 440 (745)
- ..++.+++.+...+.|..+
T Consensus 210 ~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 210 L-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp -----HHHHHHHHHHHTT-HH
T ss_pred c-cCCHHHHHHHHHHhCCCHH
Confidence 1 1366778899999988543
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.4e-07 Score=95.82 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=91.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE-----EEcc-----------chhhh--h-----ccc-----hhHHHH
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-----IVNG-----------PEVLS--K-----FVG-----ETEKNI 304 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~-----~v~~-----------~~l~~--~-----~~g-----~~e~~i 304 (745)
+.+..+||+||+|+|||++|+.+|+.+.+.... .-.| +++.. . ..| -.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 445679999999999999999999998532110 0000 11110 0 001 134567
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChh
Q 004550 305 RDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEA 384 (745)
Q Consensus 305 ~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~a 384 (745)
|++.+.+... |..+ ...|++||+++.+. ....+.++..++... .+..+|.+|+.++.+.+.
T Consensus 99 R~l~~~~~~~-p~~~---~~kV~iiEp~~~Ld-------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 99 REIIDNVYLT-SVRG---GLRVILIHPAESMN-------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHhhC-cccC---CceEEEEechhhCC-------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 7777666543 2222 24599999999884 334566777776553 356788899999999999
Q ss_pred hhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 385 LLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 385 l~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
+++ |+. .+.|++|+.++..+.|+.
T Consensus 160 i~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 988 764 788999999888877754
No 405
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.9e-06 Score=91.49 Aligned_cols=135 Identities=20% Similarity=0.244 Sum_probs=92.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcEEE--------------ccchhhhhcc---c--hhHHHHHHHHHHHHhhc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV--------------NGPEVLSKFV---G--ETEKNIRDLFADAENDQ 315 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~~v--------------~~~~l~~~~~---g--~~e~~i~~~f~~a~~~~ 315 (745)
+..+||+||.|+||+++|+++|+.+.+...-.- +-+++..-.. | -.-..+|++-+.+....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 447999999999999999999998843221000 0112211000 1 12345666554443321
Q ss_pred cccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceE
Q 004550 316 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 316 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 395 (745)
. .+...|++||++|.+. ....|.||..+++ ...++++|..|+.++.+-|.+++ |.. .+
T Consensus 105 -~---~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~ 162 (319)
T PRK06090 105 -Q---LNGYRLFVIEPADAMN-------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QW 162 (319)
T ss_pred -c---cCCceEEEecchhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eE
Confidence 1 1224599999999984 3456778888884 55679999999999999999999 876 78
Q ss_pred EecCCCHHHHHHHHHH
Q 004550 396 EISLPDENGRLQILQI 411 (745)
Q Consensus 396 ~i~~Pd~~~r~~Il~~ 411 (745)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999988887753
No 406
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.51 E-value=2.4e-06 Score=86.06 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=72.9
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC--------CCCCccc----cccccceE
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV--------SFLDSVG----ICDAFSVT 663 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~--------~~l~~~~----l~~rf~~~ 663 (745)
|.||||||++.|- -.-...|...++ +.-..++|+ +||+- +.+.|.+ |.+|. .+
T Consensus 297 PGVLFIDEVhMLD----------iEcFTyL~kalE---S~iaPivif-AsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD----------IECFTYLHKALE---SPIAPIVIF-ASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhh----------hHHHHHHHHHhc---CCCCceEEE-ecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 6788888887762 122222333332 223344444 56552 2333332 22343 36
Q ss_pred EEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHH-CCCCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHH
Q 004550 664 YHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEA-LNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDC 738 (745)
Q Consensus 664 i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~-~~~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~a 738 (745)
|..-+|+.+++++|++.. +...+++....+.. -..-+.|-.+.++--|...++. .|+..|+.+|+++|
T Consensus 362 irt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~-------~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 362 IRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT-------NGRKEISVEDVEEV 434 (456)
T ss_pred EeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH-------cCCceeecccHHHH
Confidence 777889999999999963 33344444444444 3477888888887766665544 47778999999887
Q ss_pred HH
Q 004550 739 LQ 740 (745)
Q Consensus 739 l~ 740 (745)
-.
T Consensus 435 ~~ 436 (456)
T KOG1942|consen 435 TE 436 (456)
T ss_pred HH
Confidence 65
No 407
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=4.7e-06 Score=89.52 Aligned_cols=204 Identities=19% Similarity=0.273 Sum_probs=127.7
Q ss_pred CccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc----CCCcEEEccchhhh--
Q 004550 221 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLS-- 294 (745)
Q Consensus 221 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~----~~~~~~v~~~~l~~-- 294 (745)
++.|-+.++..+ ++.|... +-.+.+..+.+.|-||||||.+...+-..+. ....+.+||.++..
T Consensus 151 ~l~gRe~e~~~v-~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIV-REFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHH-HHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 377778887766 6655433 3446778899999999999999886665442 22335677765322
Q ss_pred --------hc----c-chhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc
Q 004550 295 --------KF----V-GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 361 (745)
Q Consensus 295 --------~~----~-g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 361 (745)
.+ . +.++.+....|+.-.... ..+-++++||+|.|+.+.+. ++..+. ++.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~------k~~~llVlDEmD~L~tr~~~----------vLy~lF-ewp 283 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS------KFMLLLVLDEMDHLITRSQT----------VLYTLF-EWP 283 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc------cceEEEEechhhHHhhcccc----------eeeeeh-hcc
Confidence 11 1 112223334444333222 23679999999999844322 111111 112
Q ss_pred CccCCCcEEEEEEeCCCCCCChhhhC----CCCccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC
Q 004550 362 GVESLNNVLLIGMTNRKDMLDEALLR----PGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 437 (745)
Q Consensus 362 ~~~~~~~v~vI~~tn~~~~id~al~r----~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g 437 (745)
. ....++++||.+|..+.-|..|-| .+--...+.|++++.++..+||+..+...... ......++..|+...+
T Consensus 284 ~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~--~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 284 K-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS--IFLNAAIELCARKVAA 360 (529)
T ss_pred c-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc--ccchHHHHHHHHHhcc
Confidence 1 233579999999998876655432 23345679999999999999999888766532 1223457778888888
Q ss_pred CCHHHHH---HHHHHHHHHHH
Q 004550 438 YSGAELE---GVAKSAVSFAL 455 (745)
Q Consensus 438 ~sg~dl~---~l~~~A~~~a~ 455 (745)
-|| |++ .+|+.|...+-
T Consensus 361 ~SG-DlRkaLdv~R~aiEI~E 380 (529)
T KOG2227|consen 361 PSG-DLRKALDVCRRAIEIAE 380 (529)
T ss_pred Cch-hHHHHHHHHHHHHHHHH
Confidence 777 444 46777665553
No 408
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.48 E-value=4.7e-06 Score=84.00 Aligned_cols=107 Identities=21% Similarity=0.124 Sum_probs=62.4
Q ss_pred CeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC-------------CCCChhhhCCC
Q 004550 323 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK-------------DMLDEALLRPG 389 (745)
Q Consensus 323 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~-------------~~id~al~r~g 389 (745)
-|.+|||||+|.|- -+.+..|-..++ +.-.-+||+++|+- ..+++.|+.
T Consensus 296 vPGVLFIDEVhMLD-------------iEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------IECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred cCcceEeeehhhhh-------------hHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 46699999999872 223333434443 22234677777762 335777776
Q ss_pred CccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 004550 390 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 451 (745)
Q Consensus 390 Rf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 451 (745)
|+- .|..-++++++.++|++...+.-. ....+..+..++.....-+-+...+++.-|.
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~---l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~ 415 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEG---LQVEEEALDLLAEIGTSTSLRYAVQLLTPAS 415 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhc---ceecHHHHHHHHhhccchhHHHHHHhcCHHH
Confidence 654 455557788889999998765332 1234445666666554444444444444333
No 409
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=7.8e-06 Score=89.37 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=100.2
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc------------cccchh
Q 004550 511 DRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM------------IGLHES 578 (745)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l------------~g~~~~ 578 (745)
..+.++.+|+. ....+ .+.....-+||+||+|||||++.+.++++.|..++.-..|-.+ .+....
T Consensus 89 kKI~eVk~WL~-~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~ 165 (634)
T KOG1970|consen 89 KKISEVKQWLK-QVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQ 165 (634)
T ss_pred HhHHHHHHHHH-HHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchh
Confidence 34556666766 22222 2223345689999999999999999999998877665433221 111111
Q ss_pred hHHHHHHHHHHHHh------------cCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEec-
Q 004550 579 TKCAQIVKVFEDAY------------KSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTT- 645 (745)
Q Consensus 579 ~~~~~i~~~f~~a~------------~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~tt- 645 (745)
............+. ...+.+|++||+=..+.. .....++.++.++-..+ ...++++-|-
T Consensus 166 s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d~~~~f~evL~~y~s~g--~~PlIf~iTd~ 237 (634)
T KOG1970|consen 166 SQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------DDSETFREVLRLYVSIG--RCPLIFIITDS 237 (634)
T ss_pred hHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------hhHHHHHHHHHHHHhcC--CCcEEEEEecc
Confidence 11111111222221 134569999999655411 02223333333333322 1233333232
Q ss_pred CCCCCCCccccc------cccceEEEcCCCCHHHHHHHHHH----cc-CCC------HHHHHHHHHHCCCCcHHHHHHHH
Q 004550 646 SEVSFLDSVGIC------DAFSVTYHVPTLKTDDAKKVLKQ----LN-VFA------EEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 646 n~~~~l~~~~l~------~rf~~~i~~p~~~~~~~~~Il~~----~~-~~~------~~d~~~~~~~~~~~~ir~ll~~l 708 (745)
..++..++..+. ...-..|.|.|....=+++.|++ .. ..+ ..++..+|+ .++||||.+++.+
T Consensus 238 ~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~-~s~GDIRsAInsL 316 (634)
T KOG1970|consen 238 LSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQ-GSGGDIRSAINSL 316 (634)
T ss_pred ccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHH-hcCccHHHHHhHh
Confidence 222333221111 11124789999996555555554 21 222 445555554 4799999999999
Q ss_pred HHHH
Q 004550 709 EMAA 712 (745)
Q Consensus 709 ~~a~ 712 (745)
++-.
T Consensus 317 Qlss 320 (634)
T KOG1970|consen 317 QLSS 320 (634)
T ss_pred hhhc
Confidence 9985
No 410
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=3.1e-07 Score=99.24 Aligned_cols=208 Identities=25% Similarity=0.295 Sum_probs=116.9
Q ss_pred CccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccc
Q 004550 221 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVG 298 (745)
Q Consensus 221 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g 298 (745)
+|-|......+++.+ ++.- .+....|||.|.+||||-.+||+|.+... ..+++.+||+.+-....
T Consensus 224 ~iIG~S~am~~ll~~-i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl- 290 (550)
T COG3604 224 GIIGRSPAMRQLLKE-IEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL- 290 (550)
T ss_pred cceecCHHHHHHHHH-HHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH-
Confidence 488888888777433 3221 13346799999999999999999998763 56888999987654211
Q ss_pred hhH--HHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc-----CccC----CC
Q 004550 299 ETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID-----GVES----LN 367 (745)
Q Consensus 299 ~~e--~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d-----~~~~----~~ 367 (745)
++| ...+..|.-|....+....-..-.-||+|||..|.. .+...||..+. .+-. .-
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCCceeEE
Confidence 111 112233333333322211111223899999988742 23333444433 2222 12
Q ss_pred cEEEEEEeCCCCCCChhhhCCCCccc-------eEEecCCCHHHHH----HHHHHHHccccccCCC----CCcccHHHHH
Q 004550 368 NVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRL----QILQIHTNKMKENSFL----APDVNLQELA 432 (745)
Q Consensus 368 ~v~vI~~tn~~~~id~al~r~gRf~~-------~i~i~~Pd~~~r~----~Il~~~~~~~~~~~~l----~~~~~l~~la 432 (745)
+|.||++||+- +..+.+ .|+|.. ++.+..|...+|. -+.+.+++++...... .+...++.|.
T Consensus 358 DVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 59999999983 223332 333322 3445555544443 3334444444322111 1222355555
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhh
Q 004550 433 ARTKNYSGAELEGVAKSAVSFALNRQ 458 (745)
Q Consensus 433 ~~t~g~sg~dl~~l~~~A~~~a~~r~ 458 (745)
++.---+-++|+++++.|+..| .+.
T Consensus 435 ~y~wPGNVRELen~veRavlla-~~~ 459 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA-GRL 459 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh-ccc
Confidence 5554446799999999999887 543
No 411
>PRK08181 transposase; Validated
Probab=98.46 E-value=2.5e-07 Score=95.97 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccch-hHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~-~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
...+++|+||||||||+||.+++..+ .+..+.+++.++++...... ......+.+..... +.+|+||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~----------~dLLIID 174 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK----------FDLLILD 174 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc----------CCEEEEe
Confidence 45689999999999999999999876 34556777887777654221 11122333333322 4599999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 378 (745)
|++.+... ......+-++++... .. --+|.+||.+
T Consensus 175 Dlg~~~~~--------~~~~~~Lf~lin~R~---~~--~s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKD--------QAETSVLFELISARY---ER--RSILITANQP 209 (269)
T ss_pred ccccccCC--------HHHHHHHHHHHHHHH---hC--CCEEEEcCCC
Confidence 99876422 122334444444322 11 2477778775
No 412
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.46 E-value=4.4e-07 Score=101.25 Aligned_cols=168 Identities=23% Similarity=0.281 Sum_probs=110.0
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC--CCCeEEEecccc--------ccccchhhHHHH----HHHHHHHHhcCCCeEEEE
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS--DFPFVKIISAES--------MIGLHESTKCAQ----IVKVFEDAYKSPLSIIIL 601 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~--~~~~i~v~~~~~--------l~g~~~~~~~~~----i~~~f~~a~~~~~~il~l 601 (745)
..+|+.|.|||||-.+|+++...+ ..||+.+++... ++||-.+..... -+..+..| .-..+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A---~gGtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA---DGGTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceec---CCCccHH
Confidence 569999999999999999998665 578999987643 455554432211 11222222 2357999
Q ss_pred eccchhhhcCCCCCcchHHHHHHHHHHHhcC---CC----CCCcEEEEEecCCCCCCCccccccccc---------eEEE
Q 004550 602 DDIERLLEYVPIGPRFSNIISQTMLVLLKRL---PP----KGKKLLVIGTTSEVSFLDSVGICDAFS---------VTYH 665 (745)
Q Consensus 602 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~---~~----~~~~v~vI~ttn~~~~l~~~~l~~rf~---------~~i~ 665 (745)
|||..+. -.++..|+..|..- |- ..-.|-||+||++. |....-.++|. ..|.
T Consensus 414 deIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 414 DEIGDMP----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred HHhhhch----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeec
Confidence 9997763 45666676666542 11 12357889888775 22211124553 5688
Q ss_pred cCCCC-----HHHHHHHHHHcc----CCCHHHHHHHHHHCCCCcHHHHHHHHHHHHccccCC
Q 004550 666 VPTLK-----TDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLIEMAAQGEQGG 718 (745)
Q Consensus 666 ~p~~~-----~~~~~~Il~~~~----~~~~~d~~~~~~~~~~~~ir~ll~~l~~a~~~~~~~ 718 (745)
+||+. ...+..++++.. ..+++-+..++...++|++|+|.++++.++..++++
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g 543 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGG 543 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 89888 334445555432 234555566667677999999999999999988764
No 413
>PRK06526 transposase; Provisional
Probab=98.45 E-value=2.4e-07 Score=95.57 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccchh-HHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~~-e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
.+.+++|+||||||||++|.+++..+ .+..+.+++.++++....... ...+...+.... .+.+|+||
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~----------~~dlLIID 166 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLG----------RYPLLIVD 166 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhc----------cCCEEEEc
Confidence 45689999999999999999999876 244455556666655432110 011122222211 24599999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 378 (745)
|++.+... .....++.++++... .. -.+|.+||.+
T Consensus 167 D~g~~~~~--------~~~~~~L~~li~~r~---~~--~s~IitSn~~ 201 (254)
T PRK06526 167 EVGYIPFE--------PEAANLFFQLVSSRY---ER--ASLIVTSNKP 201 (254)
T ss_pred ccccCCCC--------HHHHHHHHHHHHHHH---hc--CCEEEEcCCC
Confidence 99976421 122334444544322 11 2377788875
No 414
>PRK12377 putative replication protein; Provisional
Probab=98.44 E-value=5.1e-07 Score=92.53 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=61.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhH--HHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETE--KNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e--~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
..+++|+||||||||+||.++++.+. +..+.+++.++++........ .....+++... ...+|+||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~----------~~dLLiID 170 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC----------KVDLLVLD 170 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc----------CCCEEEEc
Confidence 46899999999999999999999883 455667777777664321100 01112232222 24599999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 378 (745)
|+..... +.....++.++++.- .....-+|.+||..
T Consensus 171 Dlg~~~~--------s~~~~~~l~~ii~~R----~~~~~ptiitSNl~ 206 (248)
T PRK12377 171 EIGIQRE--------TKNEQVVLNQIIDRR----TASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCC--------CHHHHHHHHHHHHHH----HhcCCCEEEEcCCC
Confidence 9976531 123444555555441 11234467788864
No 415
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.41 E-value=9.8e-07 Score=99.65 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=98.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHh-------hccccCCCCCeE
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLH 325 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~-------~~~~~~~~~~p~ 325 (745)
..+++++|++||||+++|+++..... ..+++.++|..+..... -..+|..... ..+..-......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 45799999999999999999988753 34678899887632111 1122221110 000000011224
Q ss_pred EEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCC-------CCCChhhhCCC
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRK-------DMLDEALLRPG 389 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~-------~~id~al~r~g 389 (745)
+|||||++.|.+ .+...|+..++.-. ...++.+|++|+.. ..+.+.|..
T Consensus 236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~-- 300 (445)
T TIGR02915 236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY-- 300 (445)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--
Confidence 899999999852 23334444443211 11368899998764 123343432
Q ss_pred CccceEEecCCCHHHHHH----HHHHHHccccc----cCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 390 RLEVQVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 390 Rf~~~i~i~~Pd~~~r~~----Il~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
|+. .+.|..|...+|.+ +++.+++++.. ...-..+..+..|....---+.++|+++++.|+..+
T Consensus 301 ~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 301 RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 333 24455565555543 45555444321 111123334566666655557799999999887644
No 416
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.41 E-value=5.1e-07 Score=84.58 Aligned_cols=109 Identities=27% Similarity=0.370 Sum_probs=65.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCC---CeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDF---PFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~---~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
....+||+|++||||+++|++++..++. +|+.+.+...- .++++.+ ....|||+|||.|.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------HHHHHHc---CCCEEEECChHHCC--
Confidence 3466999999999999999999987653 45544333310 3455555 44789999999984
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCC-CCC-CCcc----ccccccc-eEEEcCCC
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE-VSF-LDSV----GICDAFS-VTYHVPTL 669 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~-~~~-l~~~----~l~~rf~-~~i~~p~~ 669 (745)
...+..|+..++..+.. ++-+|++++. .+. +... .|..+|. ..|.+||+
T Consensus 83 --------~~~Q~~L~~~l~~~~~~--~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 83 --------PEAQRRLLDLLKRQERS--NVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------HHHHHHHHHHHHHCTTT--TSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred --------HHHHHHHHHHHHhcCCC--CeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence 66777788888765433 3344444443 222 2221 2223443 67888875
No 417
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.39 E-value=7.4e-07 Score=91.16 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=63.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchh---HHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGET---EKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~---e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
.+++|+|+||||||+|+.++|+.+. +..+.+++.++++....... ......+++... ...+|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~----------~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS----------NVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc----------cCCEEEEe
Confidence 5899999999999999999999883 45666777777776433211 111223333322 13599999
Q ss_pred cchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004550 331 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 378 (745)
|++.... +.....++.++++. ....+..+|.+||..
T Consensus 170 Dig~~~~--------s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 170 EIGVQTE--------SRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCCC--------CHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 9987531 13344566666554 122345677788864
No 418
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.38 E-value=1.2e-05 Score=81.80 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=93.2
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCCCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP 615 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~g~ 615 (745)
.+..++||+|||||++++.+|...|.+++.+++.+.+ ..+.+.++|.-+.+.. +++.|||+++|-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~-------~~~~l~ril~G~~~~G-aW~cfdefnrl~~------ 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM-------DYQSLSRILKGLAQSG-AWLCFDEFNRLSE------ 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS--------HHHHHHHHHHHHHHT--EEEEETCCCSSH------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc-------cHHHHHHHHHHHhhcC-chhhhhhhhhhhH------
Confidence 4557899999999999999999999999999988754 3346788888877655 8999999999841
Q ss_pred cchHHHHHHHH---HHHhcCCC----------CCCcEEEEEecCCCC----CCCccccccccceEEEcCCCCHHHHHHHH
Q 004550 616 RFSNIISQTML---VLLKRLPP----------KGKKLLVIGTTSEVS----FLDSVGICDAFSVTYHVPTLKTDDAKKVL 678 (745)
Q Consensus 616 ~~~~~~~~~Ll---~~l~~~~~----------~~~~v~vI~ttn~~~----~l~~~~l~~rf~~~i~~p~~~~~~~~~Il 678 (745)
..-..+.+.+. ..+..-.. -...+-++.|.|... .+.+ .+ ..+-+.+.+-.|+...+.+++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~-nL-k~lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPE-NL-KALFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-H-HH-CTTEEEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCH-hH-HHHhheeEEeCCCHHHHHHHH
Confidence 11222222222 22221100 011223444555322 2222 23 345568888889988888887
Q ss_pred HHccCCCHH-HHH-------HHHHHC-C-----CCcHHHHHHHHHHHHccc
Q 004550 679 KQLNVFAEE-DVD-------SASEAL-N-----DMPIKKLYMLIEMAAQGE 715 (745)
Q Consensus 679 ~~~~~~~~~-d~~-------~~~~~~-~-----~~~ir~ll~~l~~a~~~~ 715 (745)
-...+|.+. .+. +++... + ..+.|.+..++.+|....
T Consensus 177 L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~k 227 (231)
T PF12774_consen 177 LLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLK 227 (231)
T ss_dssp HHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHh
Confidence 776666543 322 122221 1 578888888888877654
No 419
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=2.8e-06 Score=78.40 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=68.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhc-CCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchh
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 334 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~-~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~ 334 (745)
+-++|+||.|||||++++.+++.+. ...+..++..+.......... +.+.+...... ...+|||||++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~i~iDEiq~ 72 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKP--------GKKYIFIDEIQY 72 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhcc--------CCcEEEEehhhh
Confidence 4689999999999999999998873 345666776654332111111 22222222111 235999999998
Q ss_pred hhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCC----ChhhhCCCCccceEEecCCCHHH
Q 004550 335 ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDML----DEALLRPGRLEVQVEISLPDENG 404 (745)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~i----d~al~r~gRf~~~i~i~~Pd~~~ 404 (745)
+. .....+..+.+. ..++.+|.+++....+ .+.+ .||.. .+++.+.+-.|
T Consensus 73 ~~-----------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 73 LP-----------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred hc-----------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 72 133444444442 1345555555443333 3333 55765 67777776554
No 420
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=5.1e-06 Score=84.69 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=99.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCC-----e---------EEEeccccccccch--hhHHHHHHHHHHHHhc---
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFP-----F---------VKIISAESMIGLHE--STKCAQIVKVFEDAYK--- 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-----~---------i~v~~~~~l~g~~~--~~~~~~i~~~f~~a~~--- 593 (745)
.++...||+||+|+||..+|.++|...-+. + -.-..|+...-..+ .-+.+.++++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 466789999999999999999998643111 0 00111222110111 1234556666655432
Q ss_pred --CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCC--
Q 004550 594 --SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTL-- 669 (745)
Q Consensus 594 --~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~-- 669 (745)
....|++||++|++. ....++||..|+..++ ++++|-+|+.++.+-+ -+++| +..+.||++
T Consensus 85 e~~~~KV~II~~ae~m~----------~~AaNaLLK~LEEPp~---~t~fiLit~~~~~lLp-TI~SR-Cq~~~~~~~~~ 149 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN----------KQSANSLLKLIEEPPK---NTYGIFTTRNENNILN-TILSR-CVQYVVLSKEK 149 (261)
T ss_pred hcCCCEEEEeccHhhhC----------HHHHHHHHHhhcCCCC---CeEEEEEECChHhCch-Hhhhh-eeeeecCChhh
Confidence 346899999999974 5667778888876433 4555556666666655 34455 677888888
Q ss_pred --------CHHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHHHHH
Q 004550 670 --------KTDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLIEMA 711 (745)
Q Consensus 670 --------~~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l~~a 711 (745)
+..++.+.+..... +.+.+...+.|+..+++.+++.-
T Consensus 150 ~~~~~~~~~~~~i~~~L~~~~~-----~d~~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 150 KVPFKVESNDRYFQYILLSFYS-----VDEQLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hcccccccChHHHHHHHHHccC-----ccHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666665332 22256667788998888887743
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.36 E-value=7e-07 Score=94.73 Aligned_cols=102 Identities=21% Similarity=0.395 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhH-HHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e-~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
..+|++|+||||||||+|+.++|+++. +..+..+..++++........ ..+.+.++.... ..+|+||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~----------~dlLiID 224 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE----------APVLMLD 224 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC----------CCEEEEe
Confidence 568999999999999999999999983 445666777877665422111 112233333322 3599999
Q ss_pred cchhhhhcCCCCCCCCcc-hhHHHHHHHHh-ccCccCCCcEEEEEEeCCC
Q 004550 331 EIDAICKSRGSTRDGTGV-HDSIVNQLLTK-IDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 331 Eid~l~~~~~~~~~~~~~-~~~~~~~LL~~-~d~~~~~~~v~vI~~tn~~ 378 (745)
|+..-.. +.. .+.++..+++. +. .+..+|.|||.+
T Consensus 225 DiG~e~~--------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 225 DIGAEQM--------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred cCCCccc--------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 9976421 112 23455555442 22 345678888864
No 422
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=7.8e-07 Score=92.37 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=49.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccch-hHHHHHHHHHHHHhhccccCCCCCeEEEEE
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIF 329 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~-~e~~i~~~f~~a~~~~~~~~~~~~p~Il~i 329 (745)
....+++|+||||||||+|+.+++... .+..+.+++++++...+... ....+...+..... .+.+++|
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~---------~~dlLii 170 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVM---------APRLLII 170 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhc---------CCCEEEE
Confidence 445789999999999999999998764 34456667777776543221 11123344443221 2459999
Q ss_pred ccchhhh
Q 004550 330 DEIDAIC 336 (745)
Q Consensus 330 DEid~l~ 336 (745)
||++...
T Consensus 171 Ddlg~~~ 177 (259)
T PRK09183 171 DEIGYLP 177 (259)
T ss_pred cccccCC
Confidence 9998753
No 423
>PRK08116 hypothetical protein; Validated
Probab=98.36 E-value=1.3e-06 Score=91.06 Aligned_cols=144 Identities=20% Similarity=0.171 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccccccc---chhhHHHHHHHH
Q 004550 514 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGL---HESTKCAQIVKV 587 (745)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~---~~~~~~~~i~~~ 587 (745)
..+...+..+.+.+.... ....+++|+|+||||||++|.++|+.. +.+++.+..++.+... +.........++
T Consensus 94 ~~a~~~a~~y~~~~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~ 172 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEI 172 (268)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHH
Confidence 335555666666554322 233579999999999999999999763 6777776655532110 000000112233
Q ss_pred HHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC-CCCCc---ccccccc---
Q 004550 588 FEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-SFLDS---VGICDAF--- 660 (745)
Q Consensus 588 f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~-~~l~~---~~l~~rf--- 660 (745)
++.. . ...+|+|||+.... .++..++.|..+++..-..+. .+|.|||.+ +.|.. ..+.+|+
T Consensus 173 ~~~l-~-~~dlLviDDlg~e~--------~t~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~ 240 (268)
T PRK08116 173 IRSL-V-NADLLILDDLGAER--------DTEWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEM 240 (268)
T ss_pred HHHh-c-CCCEEEEecccCCC--------CCHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHc
Confidence 3333 2 23699999995421 234555666666665422222 345577754 22211 1233553
Q ss_pred ceEEEcCCCC
Q 004550 661 SVTYHVPTLK 670 (745)
Q Consensus 661 ~~~i~~p~~~ 670 (745)
+..+.++.++
T Consensus 241 ~~~v~~~g~d 250 (268)
T PRK08116 241 CTPVENEGKS 250 (268)
T ss_pred CEEEEeeCcC
Confidence 4556776655
No 424
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.36 E-value=5.4e-06 Score=95.73 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=40.4
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 280 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~ 280 (745)
|+..|++ |.|.++.++.+ ..++.. .++++|+||||||||++++++++.+.
T Consensus 26 ~~~~~~~--vigq~~a~~~L-~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 26 PERLIDQ--VIGQEHAVEVI-KKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CcccHHH--cCChHHHHHHH-HHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5677888 89999888877 554432 23799999999999999999998875
No 425
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.6e-06 Score=89.63 Aligned_cols=70 Identities=30% Similarity=0.526 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccc-----hhHHHHHHHHHHHHhhccccCCCCCeEE
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVG-----ETEKNIRDLFADAENDQRTRGDQSDLHV 326 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g-----~~e~~i~~~f~~a~~~~~~~~~~~~p~I 326 (745)
.+.+++|+||||||||+||-++++++. +..+.+++.++++..... ..+..+... ... ..+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~----------~dl 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKK----------VDL 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhc----------CCE
Confidence 568999999999999999999999884 456677888888775322 222222221 221 349
Q ss_pred EEEccchhhh
Q 004550 327 IIFDEIDAIC 336 (745)
Q Consensus 327 l~iDEid~l~ 336 (745)
|+|||+-...
T Consensus 171 LIiDDlG~~~ 180 (254)
T COG1484 171 LIIDDIGYEP 180 (254)
T ss_pred EEEecccCcc
Confidence 9999998763
No 426
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=2.1e-06 Score=88.10 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchh-hHHHHHHHHH
Q 004550 513 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHES-TKCAQIVKVF 588 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~-~~~~~i~~~f 588 (745)
...++..+..+.+.+.. ...+++|+||||||||++|.++|+.. +..++.+..++.+...... .......+++
T Consensus 83 ~~~a~~~a~~~a~~~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l 158 (248)
T PRK12377 83 QRYALSQAKSIADELMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFL 158 (248)
T ss_pred HHHHHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHH
Confidence 33456666666665543 23689999999999999999999764 5566555555432110000 0000112333
Q ss_pred HHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 004550 589 EDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 589 ~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~ 648 (745)
+.. ....+|+|||+.... .++...+.|...++.--..... . |-|||..
T Consensus 159 ~~l--~~~dLLiIDDlg~~~--------~s~~~~~~l~~ii~~R~~~~~p-t-iitSNl~ 206 (248)
T PRK12377 159 QEL--CKVDLLVLDEIGIQR--------ETKNEQVVLNQIIDRRTASMRS-V-GMLTNLN 206 (248)
T ss_pred HHh--cCCCEEEEcCCCCCC--------CCHHHHHHHHHHHHHHHhcCCC-E-EEEcCCC
Confidence 333 345799999996542 2344555666666654222222 3 3467754
No 427
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.5e-06 Score=80.26 Aligned_cols=100 Identities=20% Similarity=0.347 Sum_probs=59.2
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC--------CCCeEEEeccccc------------cccch-h-hHHHHH-HHHHHHH
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS--------DFPFVKIISAESM------------IGLHE-S-TKCAQI-VKVFEDA 591 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~--------~~~~i~v~~~~~l------------~g~~~-~-~~~~~i-~~~f~~a 591 (745)
...++++||||+|||++++.++... +.+++.+..+... ++... . .+...+ ..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999865 6667777655431 11110 0 112222 3333333
Q ss_pred hcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 004550 592 YKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 646 (745)
Q Consensus 592 ~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn 646 (745)
.+....+|+|||+|.+. +...+..|..+++ ...-+++++|+.+
T Consensus 84 ~~~~~~~lviDe~~~l~---------~~~~l~~l~~l~~---~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF---------SDEFLEFLRSLLN---ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH---------THHHHHHHHHHTC---SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC---------CHHHHHHHHHHHh---CCCCeEEEEEChh
Confidence 44444699999999974 2556666666555 3344677777754
No 428
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=2.1e-06 Score=79.26 Aligned_cols=88 Identities=22% Similarity=0.408 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc-------CCCcEEEccchhhh--------------hccc-hh-HHHHHHHHHH
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN-------GMEPKIVNGPEVLS--------------KFVG-ET-EKNIRDLFAD 310 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~-------~~~~~~v~~~~l~~--------------~~~g-~~-e~~i~~~f~~ 310 (745)
..+.++++||||+|||++++.+++.+. ...++.++++...+ .... .+ ......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346799999999999999999999874 34445555543331 0011 12 2223333333
Q ss_pred HHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc
Q 004550 311 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 361 (745)
Q Consensus 311 a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d 361 (745)
..... ..+|+|||+|.+. ....++.|...++
T Consensus 83 l~~~~--------~~~lviDe~~~l~------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 83 LDRRR--------VVLLVIDEADHLF------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHCT--------EEEEEEETTHHHH------------THHHHHHHHHHTC
T ss_pred HHhcC--------CeEEEEeChHhcC------------CHHHHHHHHHHHh
Confidence 33332 2499999999974 1445666666655
No 429
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.32 E-value=4.6e-07 Score=88.55 Aligned_cols=73 Identities=23% Similarity=0.511 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccchh-HHHHHHHHHHHHhhccccCCCCCeEEEEE
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIF 329 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~~-e~~i~~~f~~a~~~~~~~~~~~~p~Il~i 329 (745)
....|++|+||||||||++|.++++++ .+..+.+++.++++....... .....+.+..... +.+|+|
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~----------~dlLil 114 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR----------VDLLIL 114 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT----------SSCEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc----------ccEecc
Confidence 346799999999999999999999876 456677888888877442211 1112233333332 249999
Q ss_pred ccchhh
Q 004550 330 DEIDAI 335 (745)
Q Consensus 330 DEid~l 335 (745)
||+...
T Consensus 115 DDlG~~ 120 (178)
T PF01695_consen 115 DDLGYE 120 (178)
T ss_dssp ETCTSS
T ss_pred ccccee
Confidence 998643
No 430
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.32 E-value=7.7e-06 Score=87.56 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhc----CC------CCCCcEEEEEecCCCC-CCCccccccccceE
Q 004550 595 PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKR----LP------PKGKKLLVIGTTSEVS-FLDSVGICDAFSVT 663 (745)
Q Consensus 595 ~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~----~~------~~~~~v~vI~ttn~~~-~l~~~~l~~rf~~~ 663 (745)
...|+++||+..|. ..++..|+..+.. +. ...-++++|||+|.-. .|-+ .|..||...
T Consensus 144 nRGIlYvDEvnlL~----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrp-qLlDRfg~~ 212 (423)
T COG1239 144 NRGILYVDEVNLLD----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRP-QLLDRFGLE 212 (423)
T ss_pred cCCEEEEecccccc----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccch-hhHhhhcce
Confidence 44899999998885 4455555554433 11 2234789999999753 4444 566999999
Q ss_pred EEcCCCC-HHHHHHHHHH
Q 004550 664 YHVPTLK-TDDAKKVLKQ 680 (745)
Q Consensus 664 i~~p~~~-~~~~~~Il~~ 680 (745)
+.+-.+. .+++.+|.++
T Consensus 213 v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 213 VDTHYPLDLEERVEIIRR 230 (423)
T ss_pred eeccCCCCHHHHHHHHHH
Confidence 9887776 7777777776
No 431
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=3.4e-06 Score=77.87 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=70.0
Q ss_pred eeeeeccCCCCChhHHHHHHHhhCC--CCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcCCC
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI 613 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~~--~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~~~ 613 (745)
..++|+||.|||||++++.++.... .+++.++..+...-.. ....+.+.+.+.......+||||||..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL---ADPDLLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH---hhhhhHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 4589999999999999999997765 5555554433211000 00003344433333356899999999873
Q ss_pred CCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCC---ccccccccceEEEcCCCCHHHH
Q 004550 614 GPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLD---SVGICDAFSVTYHVPTLKTDDA 674 (745)
Q Consensus 614 g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~---~~~l~~rf~~~i~~p~~~~~~~ 674 (745)
.+...+..+.+.. .++-++.|++....+. ...+.+|.. .+++.|++-.|.
T Consensus 75 ------~~~~~lk~l~d~~----~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG----PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFREF 127 (128)
T ss_pred ------cHHHHHHHHHHhc----cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHHh
Confidence 2334444444432 2334444444433332 225667755 788888987664
No 432
>PRK08181 transposase; Validated
Probab=98.31 E-value=1.1e-06 Score=91.21 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=59.9
Q ss_pred ceeeeeccCCCCChhHHHHHHHhh---CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhcC
Q 004550 535 LVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYV 611 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~---~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~~ 611 (745)
..+++|+||||||||++|.++|.+ .|..++.+..++.+--...........+.+.... .+.+|+|||+..+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~--- 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT--- 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc---
Confidence 357999999999999999999853 4666666655543211111111112334444432 35799999998753
Q ss_pred CCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 004550 612 PIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 612 ~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~ 648 (745)
.+....+.|..+++..... +-+|| |||.+
T Consensus 181 -----~~~~~~~~Lf~lin~R~~~--~s~Ii-TSN~~ 209 (269)
T PRK08181 181 -----KDQAETSVLFELISARYER--RSILI-TANQP 209 (269)
T ss_pred -----CCHHHHHHHHHHHHHHHhC--CCEEE-EcCCC
Confidence 1234455666666654232 22444 67764
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.31 E-value=2e-05 Score=89.21 Aligned_cols=214 Identities=14% Similarity=0.206 Sum_probs=111.5
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEE-ccchh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIV-NGPEV 292 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v-~~~~l 292 (745)
+-+.++ +.-..+.++++ +.++...+. +..+.+-+||+||||||||++++.+|+++ +..+... +...+
T Consensus 15 P~~~~e--LavhkkKv~eV-~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~el-g~~v~Ew~np~~~ 82 (519)
T PF03215_consen 15 PKTLDE--LAVHKKKVEEV-RSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKEL-GFEVQEWINPVSF 82 (519)
T ss_pred CCCHHH--hhccHHHHHHH-HHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHh-CCeeEEecCCCCc
Confidence 455666 77778888888 888765432 22344567889999999999999999998 3444432 22221
Q ss_pred h------hhccchhH---------HHHHHH-HHHHHhhcc---ccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHH
Q 004550 293 L------SKFVGETE---------KNIRDL-FADAENDQR---TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIV 353 (745)
Q Consensus 293 ~------~~~~g~~e---------~~i~~~-f~~a~~~~~---~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~ 353 (745)
. ..|.+... ....++ +..++...- .......+.||+|||+=.++... ..++.
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~---------~~~f~ 153 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD---------TSRFR 153 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh---------HHHHH
Confidence 0 11111100 111211 111111000 00122457799999987665221 13333
Q ss_pred HHHHHhccCccCCC-cEEEEEE-e------CCC--------CCCChhhhCCCCccceEEecCCCHHHHHHHHHHHHccc-
Q 004550 354 NQLLTKIDGVESLN-NVLLIGM-T------NRK--------DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM- 416 (745)
Q Consensus 354 ~~LL~~~d~~~~~~-~v~vI~~-t------n~~--------~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~- 416 (745)
+.|...+.. ... .+++|.+ + |.. ..+++.++...+.. .|.|.+-...-...-|+..+...
T Consensus 154 ~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 154 EALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHh
Confidence 333333332 222 6666666 1 111 13567776544544 68888777765555555443322
Q ss_pred ---cccCCCCCcc-cHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004550 417 ---KENSFLAPDV-NLQELAARTKNYSGAELEGVAKSAVSFAL 455 (745)
Q Consensus 417 ---~~~~~l~~~~-~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 455 (745)
.......... .++.++..+.| ||+..+..-...+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1111111112 26677776654 88777766555554
No 434
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.29 E-value=3.3e-06 Score=86.66 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=85.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCC-Cc----EEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGM-EP----KIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~-~~----~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
++|+|||||||||+...+.|+.+.+. ++ ..++.++-.+. ...+.-...|..+...+-. ....++..+++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~f-st~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTY-STHAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceec-cccCceeEEEecc
Confidence 79999999999999999999998652 21 11233222111 1223334455555432111 1124578999999
Q ss_pred chhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHHHHHHHHHH
Q 004550 332 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 411 (745)
Q Consensus 332 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~ 411 (745)
.|++.. ...++|...++.+.. ++.++..+|.+..+.|++++ ||.+ +.+.+.+.+.-...+..
T Consensus 140 ADaMT~-------------~AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 140 ADAMTR-------------DAQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSH 201 (360)
T ss_pred hhHhhH-------------HHHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHH
Confidence 999853 334455555554433 55666778999999999998 8774 45556666666666666
Q ss_pred HHc
Q 004550 412 HTN 414 (745)
Q Consensus 412 ~~~ 414 (745)
+..
T Consensus 202 i~e 204 (360)
T KOG0990|consen 202 IRE 204 (360)
T ss_pred HHh
Confidence 654
No 435
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.29 E-value=2.1e-05 Score=93.60 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=101.8
Q ss_pred CCCCCceEEEEcCCCChHHHHH-HHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCC-------CC
Q 004550 251 GIKHVKGMLLYGPPGTGKTLMA-RQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGD-------QS 322 (745)
Q Consensus 251 g~~~~~giLL~GppGtGKT~la-r~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~-------~~ 322 (745)
.+...++++++||||+|||+|. -++-.++ ...++.+|.+.. .+-..+-.+++.-...++..|. .-
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~-~~ev~~~Nfs~~------t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v 1562 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSEL-ITEVKYFNFSTC------TMTPSKLSVLERETEYYPNTGVVRLYPKPVV 1562 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhh-heeeeEEeeccc------cCCHHHHHHHHhhceeeccCCeEEEccCcch
Confidence 3456789999999999999963 3333333 344555554322 1222223334443333333221 01
Q ss_pred CeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCc--------cCCCcEEEEEEeCCCCCC-----ChhhhCCC
Q 004550 323 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------ESLNNVLLIGMTNRKDML-----DEALLRPG 389 (745)
Q Consensus 323 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~--------~~~~~v~vI~~tn~~~~i-----d~al~r~g 389 (745)
.--|||.|||+ | |....-.. +..--.+.+|+.. +|+ ..-.++++.|++|++.+. .+.+.|
T Consensus 1563 K~lVLFcDeIn-L-p~~~~y~~--~~vI~FlR~l~e~-QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1563 KDLVLFCDEIN-L-PYGFEYYP--PTVIVFLRPLVER-QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred hheEEEeeccC-C-ccccccCC--CceEEeeHHHHHh-cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 11289999999 3 32221111 1111122333333 222 223579999999998764 345554
Q ss_pred CccceEEecCCCHHHHHHHHHHHHccccccC----CCC-----CcccH-HHH-------HHHcCCCCHHHHHHHHHHHHH
Q 004550 390 RLEVQVEISLPDENGRLQILQIHTNKMKENS----FLA-----PDVNL-QEL-------AARTKNYSGAELEGVAKSAVS 452 (745)
Q Consensus 390 Rf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~----~l~-----~~~~l-~~l-------a~~t~g~sg~dl~~l~~~A~~ 452 (745)
=...+++..|......+|.+.++.+...-. .+. ..+.+ ... .+..-+|+|+||-.+++....
T Consensus 1636 -~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1636 -KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred -CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 355788999999999999998765432100 000 00000 001 112247999999888876555
Q ss_pred HHH
Q 004550 453 FAL 455 (745)
Q Consensus 453 ~a~ 455 (745)
+|-
T Consensus 1715 yae 1717 (3164)
T COG5245 1715 YAE 1717 (3164)
T ss_pred HHh
Confidence 443
No 436
>PRK06921 hypothetical protein; Provisional
Probab=98.29 E-value=5.7e-06 Score=86.17 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc---CCCcEEEccchhhh
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEVLS 294 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~---~~~~~~v~~~~l~~ 294 (745)
...+++|+||||||||+|+.++|+++. +..+.+++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 457899999999999999999999874 34455566555544
No 437
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.29 E-value=2.9e-05 Score=89.09 Aligned_cols=39 Identities=31% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh--c-CCCcEEEcc
Q 004550 251 GIKHVKGMLLYGPPGTGKTLMARQIGKML--N-GMEPKIVNG 289 (745)
Q Consensus 251 g~~~~~giLL~GppGtGKT~lar~la~~l--~-~~~~~~v~~ 289 (745)
|+++..-+|++|+||+|||+++..++... + +..+.+++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 56778889999999999999999887543 2 344444443
No 438
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.28 E-value=1.4e-05 Score=80.38 Aligned_cols=160 Identities=20% Similarity=0.301 Sum_probs=104.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCCcE--EEcc-------------chhhh--------hccch-hHHHHHHHHHHHH
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNG-------------PEVLS--------KFVGE-TEKNIRDLFADAE 312 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~~~~--~v~~-------------~~l~~--------~~~g~-~e~~i~~~f~~a~ 312 (745)
++|+|||+|+||.|.+-++.+++-|..+- -+.. +.+-+ .-.|- ..--++++.++..
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 69999999999999999999988542110 0000 00111 11232 2334566666655
Q ss_pred hhccc-cCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCc
Q 004550 313 NDQRT-RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRL 391 (745)
Q Consensus 313 ~~~~~-~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf 391 (745)
..++- ......-.+++|.|+|.|... ....|-.-|+.. .+++.+|..+|....+-+++++ |.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkY--s~~~RlIl~cns~SriIepIrS--RC 178 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRD-------------AQHALRRTMEKY--SSNCRLILVCNSTSRIIEPIRS--RC 178 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHH-------------HHHHHHHHHHHH--hcCceEEEEecCcccchhHHhh--he
Confidence 44332 222334569999999998532 233444455533 2578888899999999999998 75
Q ss_pred cceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCC
Q 004550 392 EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 437 (745)
Q Consensus 392 ~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g 437 (745)
- .|.+|.|+.++...++...+++-.- ..++.-+..+|+.+.|
T Consensus 179 l-~iRvpaps~eeI~~vl~~v~~kE~l---~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 179 L-FIRVPAPSDEEITSVLSKVLKKEGL---QLPKELLKRIAEKSNR 220 (351)
T ss_pred e-EEeCCCCCHHHHHHHHHHHHHHhcc---cCcHHHHHHHHHHhcc
Confidence 4 6899999999999999888765442 2344456777777765
No 439
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.26 E-value=1.4e-06 Score=93.08 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=47.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccchhhhhccch---hHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 330 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~l~~~~~g~---~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iD 330 (745)
.+++|+||||||||+||.++|+++ .+..+.+++.++++...... ........++.... ..+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~----------~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN----------CDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc----------CCEEEEe
Confidence 789999999999999999999987 34566777777776643211 00111111222221 3499999
Q ss_pred cchhh
Q 004550 331 EIDAI 335 (745)
Q Consensus 331 Eid~l 335 (745)
|+...
T Consensus 254 DlG~e 258 (329)
T PRK06835 254 DLGTE 258 (329)
T ss_pred ccCCC
Confidence 99875
No 440
>PRK06526 transposase; Provisional
Probab=98.25 E-value=1.2e-06 Score=90.46 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=55.1
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccch-hhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHE-STKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~-~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
..+++|+||||||||++|.+++.+. |.....+..++ ++.... ......+.+.+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~-l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~-- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ-WVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP-- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH-HHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC--
Confidence 4679999999999999999998653 44443332332 211110 00111222333332 345799999998763
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~ 648 (745)
.+....+.|..+++...+. .. +|.|||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~~--~s-~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYER--AS-LIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHhc--CC-EEEEcCCC
Confidence 1233344555555543222 22 45577765
No 441
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.24 E-value=4.2e-06 Score=94.83 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=95.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHhh-------ccccCCCCCeE
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDLH 325 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~-------~~~~~~~~~p~ 325 (745)
..++|++|++||||+++|+++..... +.+++.++|..+-... .-..+|...... .+.........
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 35799999999999999999987652 3567888987663211 111222211000 00000001123
Q ss_pred EEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCCCCCChhhhCCCCccc---
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV--- 393 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~--- 393 (745)
+|||||+|.+.+. +...|+..++.-. ...++.+|++||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~ 303 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLF 303 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHH
Confidence 8999999998532 3344444443211 123588999998641 12222333322
Q ss_pred ----eEEecCCCHHHHHH----HHHHHHcccccc----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004550 394 ----QVEISLPDENGRLQ----ILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 394 ----~i~i~~Pd~~~r~~----Il~~~~~~~~~~----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
.+.+..|...+|.+ ++..++.+.... ..-..+..++.|....---+-++|+++++.|+..
T Consensus 304 ~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 304 YRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 35566666555543 444444443221 0112233345555555455778999999988754
No 442
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=9.5e-06 Score=82.61 Aligned_cols=157 Identities=25% Similarity=0.325 Sum_probs=80.8
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCCC---eEEEecccc--------c-------------ccc-------------c
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAES--------M-------------IGL-------------H 576 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~~---~i~v~~~~~--------l-------------~g~-------------~ 576 (745)
+...++++||.|+|||++++.+.....-. .+.+...+. + .+. .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 45789999999999999999999876321 111111000 0 000 0
Q ss_pred hhhHHHHHHHHHHHHhcC-CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCC--C-CC
Q 004550 577 ESTKCAQIVKVFEDAYKS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVS--F-LD 652 (745)
Q Consensus 577 ~~~~~~~i~~~f~~a~~~-~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~--~-l~ 652 (745)
.......+..+++...+. ...||+|||++.+. .. ..-.......|..+++.........+|+.+++..- . .+
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IA---SEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BC---TTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hc---ccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence 011234556666665543 23899999999997 11 11124566666666666433334445555544211 1 11
Q ss_pred -ccccccccceEEEcCCCCHHHHHHHHHHc----cC--CCHHHHHHHHHH
Q 004550 653 -SVGICDAFSVTYHVPTLKTDDAKKVLKQL----NV--FAEEDVDSASEA 695 (745)
Q Consensus 653 -~~~l~~rf~~~i~~p~~~~~~~~~Il~~~----~~--~~~~d~~~~~~~ 695 (745)
...+.+|+.. +.+++++.++..++++.. .. .+++++..+...
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHH
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 2234477777 999999999999999983 11 366666655554
No 443
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.5e-05 Score=83.02 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=78.1
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCCCe--------EEEecccccc----ccchhhHHHHHHHHHHHHhc----CCC
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDFPF--------VKIISAESMI----GLHESTKCAQIVKVFEDAYK----SPL 596 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~--------i~v~~~~~l~----g~~~~~~~~~i~~~f~~a~~----~~~ 596 (745)
+.+...||+||+|+||+.+|.++|...-+.- -.-..|+... |....-+.+.+|++-+.+.. ++.
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 4566789999999999999999996543210 0011222211 11111245667777776643 455
Q ss_pred eEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC
Q 004550 597 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 670 (745)
Q Consensus 597 ~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~ 670 (745)
.|++||++|++. ....++|+..|+..++ ++++|-.|+.++.+-+ -+++| +..+.|+++.
T Consensus 97 kv~ii~~ad~mt----------~~AaNaLLK~LEEPp~---~~~fiL~~~~~~~ll~-TI~SR-cq~~~~~~~~ 155 (290)
T PRK05917 97 KIYIIHEADRMT----------LDAISAFLKVLEDPPQ---HGVIILTSAKPQRLPP-TIRSR-SLSIHIPMEE 155 (290)
T ss_pred eEEEEechhhcC----------HHHHHHHHHHhhcCCC---CeEEEEEeCChhhCcH-HHHhc-ceEEEccchh
Confidence 799999999974 5677788888877533 4555556666666665 33344 7788888763
No 444
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.24 E-value=5.9e-06 Score=97.10 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=70.3
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCC-------CCeEEEeccccccccchhhHHHHH--HHHHHHHhcCCCeEEEEecc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSD-------FPFVKIISAESMIGLHESTKCAQI--VKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~-------~~~i~v~~~~~l~g~~~~~~~~~i--~~~f~~a~~~~~~il~lDEi 604 (745)
...++||.|+||||||.+|++++..+. .++..+....... .....+.... ...+. ....++++|||+
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEi 566 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDEL 566 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEE---EcCCCeEEecch
Confidence 346899999999999999999997543 2333322111100 0000000000 00111 123479999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCC----C------CCCcEEEEEecCCCC-----------CCC-ccccccccce
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLP----P------KGKKLLVIGTTSEVS-----------FLD-SVGICDAFSV 662 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----~------~~~~v~vI~ttn~~~-----------~l~-~~~l~~rf~~ 662 (745)
+++. ...+..|++.|+.-. . -..++.||||+|... .++ +..+.+|||.
T Consensus 567 dkms----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 567 DKCH----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred hhCC----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 9973 567777888886532 0 124788999999742 111 1245599997
Q ss_pred EEE-cCCCC
Q 004550 663 TYH-VPTLK 670 (745)
Q Consensus 663 ~i~-~p~~~ 670 (745)
++- ++.++
T Consensus 637 If~l~D~~d 645 (915)
T PTZ00111 637 IYLVLDHID 645 (915)
T ss_pred EEEecCCCC
Confidence 743 34444
No 445
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.3e-06 Score=94.77 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=36.9
Q ss_pred CCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 279 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l 279 (745)
..+|.| |-|++..+..+ ..+. .-..|+|++||||||||++|+.+...|
T Consensus 175 ~~D~~D--V~GQ~~AKrAl-eiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKD--VKGQEQAKRAL-EIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred Ccchhh--hcCcHHHHHHH-HHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 346777 99999987766 2222 123579999999999999999888766
No 446
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.23 E-value=4.5e-06 Score=88.59 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=45.2
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccch
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIER 606 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~ 606 (745)
...+++|+||+|||||++|.++|+++ |.+...+..++.+.-....-....+.+.++... ...+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 45789999999999999999999775 666666656654311110000011233444432 346999999965
No 447
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.23 E-value=9.6e-06 Score=92.24 Aligned_cols=180 Identities=18% Similarity=0.188 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHhhc-------cccCCCCCe
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ-------RTRGDQSDL 324 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~-------~~~~~~~~p 324 (745)
....+++.|++|||||++|+++..... ..+++.++|..+.... .-..+|....... ...-.....
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 345799999999999999999998763 4578889998763211 1112222111000 000001112
Q ss_pred EEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCCC-------CCChhhhCC
Q 004550 325 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDEALLRP 388 (745)
Q Consensus 325 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~-------~id~al~r~ 388 (745)
..|||||+|.|.. .+...|+..++.-. ...++.+|++|+..- .+.+.|..
T Consensus 234 Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 234 GTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred CEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 3899999999853 23334555443211 123578999987631 23455554
Q ss_pred CCcc-ceEEecCCC--HHHHHHHHHHHHcccccc----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 389 GRLE-VQVEISLPD--ENGRLQILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 389 gRf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~~----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
||. ..|.+|+.. .++...++..+++..... ..-.....+..|....---+-++|+++++.++..+
T Consensus 300 -~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 300 -RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred -HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 553 344444432 234444666665543221 11122334666666665567799999999887654
No 448
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.22 E-value=8.5e-07 Score=87.17 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=18.9
Q ss_pred eeeeeccCCCCChhHHHHHHHhh
Q 004550 536 VTCLLEGPSGSGKTALAATAGID 558 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~ 558 (745)
.++||+||||||||++|+.++..
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHC
T ss_pred CCeEEECCCCCCHHHHHHHHHHh
Confidence 69999999999999999999864
No 449
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.22 E-value=1.8e-06 Score=80.91 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=53.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEcc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDE 331 (745)
...+|||+|+|||||+++|+++...... .++..+++..+. .++++.+.. ..|||+|
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~~-----------gtL~l~~ 77 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAKG-----------GTLYLKN 77 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCTT-----------SEEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcCC-----------CEEEECC
Confidence 3456999999999999999999987632 233344444321 334555422 2999999
Q ss_pred chhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCC
Q 004550 332 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR 377 (745)
Q Consensus 332 id~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~ 377 (745)
+|.+.+. ....|+..++... ..++.+|+++..
T Consensus 78 i~~L~~~-------------~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 78 IDRLSPE-------------AQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp GCCS-HH-------------HHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred hHHCCHH-------------HHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 9998532 2233333333222 356677777754
No 450
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=4e-05 Score=80.87 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=93.7
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhCCC-----------C--eEEEeccccccccchhhHHHHHHHHHHHHhc-----CC
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDSDF-----------P--FVKIISAESMIGLHESTKCAQIVKVFEDAYK-----SP 595 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~~~-----------~--~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~-----~~ 595 (745)
-....||+|+.|.||+.+|+.+|...-+ | ++.+. + .| ..-+.+.++++.+.... +.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~---~g--~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I---FD--KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c---CC--CcCCHHHHHHHHHHhccCCcccCC
Confidence 4456789999999999999999876411 1 22221 0 01 11234567776666521 36
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHH
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
..|++||++|++ +....++|+..|+.+|+ ..++|+ +|+.++.+-+. ++ ..+..++|++++.+++.
T Consensus 91 ~KvvII~~~e~m----------~~~a~NaLLK~LEEPp~--~t~~il-~~~~~~kll~T-I~-SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 91 KKILIIKNIEKT----------SNSLLNALLKTIEEPPK--DTYFLL-TTKNINKVLPT-IV-SRCQVFNVKEPDQQKIL 155 (299)
T ss_pred ceEEEEeccccc----------CHHHHHHHHHHhhCCCC--CeEEEE-EeCChHhChHH-HH-hCeEEEECCCCCHHHHH
Confidence 789999999886 35567788888887543 344444 44455544442 23 44889999999999999
Q ss_pred HHHHHccCCCHHHHHHHHHHCCCCcHHHHHH
Q 004550 676 KVLKQLNVFAEEDVDSASEALNDMPIKKLYM 706 (745)
Q Consensus 676 ~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~ 706 (745)
+.|...+ . +++...++...+++ ..+++.
T Consensus 156 ~~l~~~~-~-~~~~a~~~a~~~~~-~~~a~~ 183 (299)
T PRK07132 156 AKLLSKN-K-EKEYNWFYAYIFSN-FEQAEK 183 (299)
T ss_pred HHHHHcC-C-ChhHHHHHHHHcCC-HHHHHH
Confidence 8888753 3 33444455555543 444433
No 451
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.20 E-value=7.4e-06 Score=93.04 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=99.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHH-------hhccccCCCCCeE
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAE-------NDQRTRGDQSDLH 325 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~-------~~~~~~~~~~~p~ 325 (745)
..++++.|++||||+++|+++..... ..+++.++|..+..... -..+|.... .............
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADGG 230 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCCC
Confidence 45799999999999999999988753 45778899877632211 111221100 0000000011234
Q ss_pred EEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCCC-------CCChhhhCCC
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDEALLRPG 389 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~-------~id~al~r~g 389 (745)
.|||||++.|... +...|+..++.-. ...++.+|++|+..- .+.+.|..
T Consensus 231 tl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~-- 295 (463)
T TIGR01818 231 TLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH-- 295 (463)
T ss_pred eEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--
Confidence 8999999998532 2334444443211 123678899887641 23334433
Q ss_pred Ccc-ceEEecCCC--HHHHHHHHHHHHccccccC----CCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 390 RLE-VQVEISLPD--ENGRLQILQIHTNKMKENS----FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 390 Rf~-~~i~i~~Pd--~~~r~~Il~~~~~~~~~~~----~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
|+. ..|.+|+.. .++...++..+++...... ...++..+..|....---+-++|+++++.|+..+
T Consensus 296 rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 443 356665554 4556666666655443211 1122334555555543345689999999988655
No 452
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4e-05 Score=90.14 Aligned_cols=127 Identities=24% Similarity=0.355 Sum_probs=83.5
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcC--CCcEEEccchhhh-----
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLS----- 294 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~--~~~~~v~~~~l~~----- 294 (745)
|.|+++.+..| -+++...-. .+... ++.-.+||.||.|+|||-||+++|..+-+ ..++.++.+++..
T Consensus 564 V~gQ~eAv~aI-a~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 564 VIGQDEAVAAI-AAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred ccchHHHHHHH-HHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 88999988888 444433210 00000 46678999999999999999999999843 3456677775322
Q ss_pred ----hccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc------
Q 004550 295 ----KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE------ 364 (745)
Q Consensus 295 ----~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~------ 364 (745)
.|+|..+- .++.+..+. .| .+||+|||||.- +..+++.|+..+|..+
T Consensus 638 gsp~gyvG~e~g--g~Lteavrr-rP-------~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKR-RP-------YSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred CCCcccccchhH--HHHHHHHhc-CC-------ceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCC
Confidence 45665542 244444443 33 469999999964 4456676777666432
Q ss_pred ---CCCcEEEEEEeCC
Q 004550 365 ---SLNNVLLIGMTNR 377 (745)
Q Consensus 365 ---~~~~v~vI~~tn~ 377 (745)
+..|++||.|+|.
T Consensus 695 r~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNV 710 (898)
T ss_pred cEeeccceEEEEeccc
Confidence 2357899999876
No 453
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.18 E-value=4.5e-06 Score=86.31 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecccccc----ccchhhHHHHHHHHH
Q 004550 516 IYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMI----GLHESTKCAQIVKVF 588 (745)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~----g~~~~~~~~~i~~~f 588 (745)
.+..+..+.+.+. ...+++|+||||+|||++|.++|++. |.+.+.+..++.+. +...+.....+.+.
T Consensus 91 ~l~~~~~~~~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~- 164 (254)
T COG1484 91 ALEDLASLVEFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE- 164 (254)
T ss_pred HHHHHHHHHHHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-
Confidence 4444444444443 56789999999999999999999754 67777777777542 11112222222221
Q ss_pred HHHhcCCCeEEEEeccchh
Q 004550 589 EDAYKSPLSIIILDDIERL 607 (745)
Q Consensus 589 ~~a~~~~~~il~lDEid~l 607 (745)
. ....+|+|||+-..
T Consensus 165 --l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 165 --L--KKVDLLIIDDIGYE 179 (254)
T ss_pred --h--hcCCEEEEecccCc
Confidence 2 23469999999664
No 454
>PRK09183 transposase/IS protein; Provisional
Probab=98.18 E-value=3.5e-06 Score=87.55 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=58.9
Q ss_pred CceeeeeccCCCCChhHHHHHHHhh---CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~---~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
...+++|+||||||||++|.+++.. .|.....+..++.+...........+..++.... ..+.+++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~-- 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLP-- 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCC--
Confidence 3467999999999999999999754 4555555544443212111111122445565543 345799999997642
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~ 648 (745)
++....+.|+.+++..-.. +-+ |.|||.+
T Consensus 178 ------~~~~~~~~lf~li~~r~~~--~s~-iiTsn~~ 206 (259)
T PRK09183 178 ------FSQEEANLFFQVIAKRYEK--GSM-ILTSNLP 206 (259)
T ss_pred ------CChHHHHHHHHHHHHHHhc--CcE-EEecCCC
Confidence 2223334555555543222 223 4477764
No 455
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.17 E-value=7e-06 Score=96.50 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHH-HHHHHH--HHhhccccCCCCCeEEEEE
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNI-RDLFAD--AENDQRTRGDQSDLHVIIF 329 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i-~~~f~~--a~~~~~~~~~~~~p~Il~i 329 (745)
...-+|||+|+||||||.+||++++..... . ..++..... +|-+.... +.-... ........ .....+++|
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~-~-ytsG~~~s~--vgLTa~~~~~d~~tG~~~le~GaLv--lAdgGtL~I 563 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRS-I-YTSGKSSSS--VGLTASIKFNESDNGRAMIQPGAVV--LANGGVCCI 563 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCcc-c-cCCCCCCcc--ccccchhhhcccccCcccccCCcEE--EcCCCeEEe
Confidence 344589999999999999999999864311 1 111111110 11111000 000000 00000000 001139999
Q ss_pred ccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc-----------CCCcEEEEEEeCCCC-------------CCChhh
Q 004550 330 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD-------------MLDEAL 385 (745)
Q Consensus 330 DEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~-----------~~~~v~vI~~tn~~~-------------~id~al 385 (745)
||+|.+.+ .....|+..|+.-. -..++.|||++|+.. .+++++
T Consensus 564 DEidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 564 DELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred cchhhCCH-------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 99999842 23344555554211 124789999999852 258999
Q ss_pred hCCCCccce-EEecCCCHHHHHHHHH
Q 004550 386 LRPGRLEVQ-VEISLPDENGRLQILQ 410 (745)
Q Consensus 386 ~r~gRf~~~-i~i~~Pd~~~r~~Il~ 410 (745)
++ |||.. +-++.|+++.=..|-+
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHHHH
Confidence 99 99866 4455666654444433
No 456
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.16 E-value=9.7e-06 Score=93.00 Aligned_cols=187 Identities=12% Similarity=0.146 Sum_probs=118.7
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCC--CCeEEEec---cccccccchhhHHHHH--------HHHHHHHhcCCCeEEEE
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIIS---AESMIGLHESTKCAQI--------VKVFEDAYKSPLSIIIL 601 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~--~~~i~v~~---~~~l~g~~~~~~~~~i--------~~~f~~a~~~~~~il~l 601 (745)
..++|+.|+.|++||+++++++..+. .||+.+-. .+-++|...-+ ..+ ..++..| ...||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~--~~l~~g~~~~~pGlla~A---h~GvL~l 99 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLA--ATLRAGRPVAQRGLLAEA---DGGVLVL 99 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHH--hHhhcCCcCCCCCceeec---cCCEEEe
Confidence 47899999999999999999998764 47776521 12245532100 001 1122222 2379999
Q ss_pred eccchhhhcCCCCCcchHHHHHHHHHHHhcCC----------CCCCcEEEEEecCCCCCC--CccccccccceEEEcCCC
Q 004550 602 DDIERLLEYVPIGPRFSNIISQTMLVLLKRLP----------PKGKKLLVIGTTSEVSFL--DSVGICDAFSVTYHVPTL 669 (745)
Q Consensus 602 DEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~----------~~~~~v~vI~ttn~~~~l--~~~~l~~rf~~~i~~p~~ 669 (745)
||+..+ ...+++.|++-|+.-. ....++++|||.|..+.. -+..+..||+..+.++.+
T Consensus 100 De~n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 100 AMAERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cCcccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 999875 4678888888776521 112467888874432111 122456999999999988
Q ss_pred CHHHHH-------HHHHH---c-c-CCCHHHHHHHHHHCC--CC-cHHHHHHHHHHHHccccCCchhhcccCCCCccHhH
Q 004550 670 KTDDAK-------KVLKQ---L-N-VFAEEDVDSASEALN--DM-PIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISH 734 (745)
Q Consensus 670 ~~~~~~-------~Il~~---~-~-~~~~~d~~~~~~~~~--~~-~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~ 734 (745)
+..+.. +|... + + ..++..+..++.... +. +.|..+.+++.|...+.- +|+..|+.+|
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL-------~Gr~~V~~~d 242 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAAL-------AGRTAVEEED 242 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHH-------cCCCCCCHHH
Confidence 854432 22221 1 1 233444444443333 43 778888888888887743 5889999999
Q ss_pred HHHHHHHHh
Q 004550 735 FYDCLQDMV 743 (745)
Q Consensus 735 ~~~al~~~~ 743 (745)
+.+|+.-++
T Consensus 243 v~~Aa~lvL 251 (584)
T PRK13406 243 LALAARLVL 251 (584)
T ss_pred HHHHHHHHH
Confidence 999998664
No 457
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.14 E-value=6.7e-06 Score=84.14 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchh---hHHHHHHHHH
Q 004550 515 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHES---TKCAQIVKVF 588 (745)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~---~~~~~i~~~f 588 (745)
.++..+..+.+.+.. ...+++|+|+||||||++|.++|..+ +..++.+..++.+ ..... .......+++
T Consensus 83 ~al~~a~~~~~~~~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~-~~l~~~~~~~~~~~~~~l 157 (244)
T PRK07952 83 NALSKARQYVEEFDG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM-SAMKDTFSNSETSEEQLL 157 (244)
T ss_pred HHHHHHHHHHHhhcc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH-HHHHHHHhhccccHHHHH
Confidence 355555555544321 23589999999999999999999765 5566655444432 11000 0111223444
Q ss_pred HHHhcCCCeEEEEeccchhh
Q 004550 589 EDAYKSPLSIIILDDIERLL 608 (745)
Q Consensus 589 ~~a~~~~~~il~lDEid~l~ 608 (745)
+... ...+|+|||++...
T Consensus 158 ~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 158 NDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred HHhc--cCCEEEEeCCCCCC
Confidence 4432 45799999998753
No 458
>PRK06921 hypothetical protein; Provisional
Probab=98.14 E-value=1.5e-05 Score=83.11 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC----CCCeEEEeccccccccchhhHHHHHHHHHHH
Q 004550 515 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS----DFPFVKIISAESMIGLHESTKCAQIVKVFED 590 (745)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~----~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~ 590 (745)
.+...+..+++.+.........+++|+||||+|||+++.++|++. +...+.+...+.+ ..... ......+.++.
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~-~~l~~-~~~~~~~~~~~ 174 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF-GDLKD-DFDLLEAKLNR 174 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH-HHHHH-HHHHHHHHHHH
Confidence 344455556665544333345789999999999999999999764 4555555433321 11100 00111222222
Q ss_pred HhcCCCeEEEEeccch-hhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 004550 591 AYKSPLSIIILDDIER-LLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE 647 (745)
Q Consensus 591 a~~~~~~il~lDEid~-l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~ 647 (745)
. ....+|+|||++. +.+. +..++...+.|..+++.....+.. +|| |||.
T Consensus 175 ~--~~~dlLiIDDl~~~~~g~----e~~t~~~~~~lf~iin~R~~~~k~-tIi-tsn~ 224 (266)
T PRK06921 175 M--KKVEVLFIDDLFKPVNGK----PRATEWQIEQMYSVLNYRYLNHKP-ILI-SSEL 224 (266)
T ss_pred h--cCCCEEEEeccccccCCC----ccCCHHHHHHHHHHHHHHHHCCCC-EEE-ECCC
Confidence 2 2347999999944 2111 112333445555666554322223 445 6664
No 459
>PF05729 NACHT: NACHT domain
Probab=98.13 E-value=1.5e-05 Score=76.49 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=72.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhcCCC--------cEEEccchhhhh------------ccchhHHHHHHHHHHHHhhcc
Q 004550 257 GMLLYGPPGTGKTLMARQIGKMLNGME--------PKIVNGPEVLSK------------FVGETEKNIRDLFADAENDQR 316 (745)
Q Consensus 257 giLL~GppGtGKT~lar~la~~l~~~~--------~~~v~~~~l~~~------------~~g~~e~~i~~~f~~a~~~~~ 316 (745)
-++|+|+||+|||++++.++..+.... ++.+...+.... ............+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK-- 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc--
Confidence 378999999999999999998773221 112222222111 0111111111111111111
Q ss_pred ccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCC--CChhhhCCCCccce
Q 004550 317 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM--LDEALLRPGRLEVQ 394 (745)
Q Consensus 317 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~--id~al~r~gRf~~~ 394 (745)
....+|+||.+|.+...... .........+..++.. ....++.+|.++..... +...+.. ...
T Consensus 80 -----~~~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 80 -----NKRVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred -----CCceEEEEechHhcccchhh--hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 23569999999999753321 0001122233333332 12234455555433221 2222222 146
Q ss_pred EEecCCCHHHHHHHHHHHHc
Q 004550 395 VEISLPDENGRLQILQIHTN 414 (745)
Q Consensus 395 i~i~~Pd~~~r~~Il~~~~~ 414 (745)
++++..+++++.++++.+++
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEECCCCHHHHHHHHHHHhh
Confidence 89999999999999988765
No 460
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8e-06 Score=88.65 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 698 DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 698 ~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
+.++|..-.++..|...++- +|...|...|+.+|+.
T Consensus 448 ~lS~R~~~rILKvarTiADL-------~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 448 GLSARAYHRILKVARTIADL-------EGSEQIERSHLAEAIS 483 (490)
T ss_pred chhHHHHHHHHHHHhhhhcc-------cCcchhhHHHHHHHHh
Confidence 55667777777777777654 4678899999999986
No 461
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=4.7e-05 Score=79.68 Aligned_cols=155 Identities=11% Similarity=0.108 Sum_probs=93.0
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhhCCC-------Ce---------EEEeccccccccchh--hHHHHHHHHHHHHhc-
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------PF---------VKIISAESMIGLHES--TKCAQIVKVFEDAYK- 593 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~~~~-------~~---------i~v~~~~~l~g~~~~--~~~~~i~~~f~~a~~- 593 (745)
+.+..+||+|| .||+++|+.+|...-+ ++ ..-+.|+.+.=..++ -+.+.||++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 55677899996 6899999999864321 10 000122221101111 245678887776643
Q ss_pred ---CCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC
Q 004550 594 ---SPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 670 (745)
Q Consensus 594 ---~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~ 670 (745)
++..|++||++|++. ....++|+..|+..++ ++++|-+|+.++.+-+ -+++| +..++|++ +
T Consensus 100 p~~~~~kV~II~~ad~m~----------~~AaNaLLKtLEEPp~---~t~~iL~t~~~~~lLp-TI~SR-cq~i~f~~-~ 163 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH----------VNAANSLLKVIEEPQS---EIYIFLLTNDENKVLP-TIKSR-TQIFHFPK-N 163 (290)
T ss_pred cccCCcEEEEeehhhhcC----------HHHHHHHHHHhcCCCC---CeEEEEEECChhhCch-HHHHc-ceeeeCCC-c
Confidence 345799999999974 5567778887776432 4455556666665555 34455 78999987 7
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHCCCCcHHHHHHHH
Q 004550 671 TDDAKKVLKQLNVFAEEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 671 ~~~~~~Il~~~~~~~~~d~~~~~~~~~~~~ir~ll~~l 708 (745)
.+++.+++...+ ...++ .+++...++ ++.+++.++
T Consensus 164 ~~~~~~~L~~~g-~~~~~-a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 164 EAYLIQLLEQKG-LLKTQ-AELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred HHHHHHHHHHcC-CChHH-HHHHHHHCC-CHHHHHHHh
Confidence 888889998654 33222 333444433 455544443
No 462
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.11 E-value=5.7e-05 Score=75.70 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=111.9
Q ss_pred CCCce-EEEEcCCCChHHHHHHHHHHHhcCCCcE--EEccch-----hhhhccch------------hHHHHHHHHHHHH
Q 004550 253 KHVKG-MLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPE-----VLSKFVGE------------TEKNIRDLFADAE 312 (745)
Q Consensus 253 ~~~~g-iLL~GppGtGKT~lar~la~~l~~~~~~--~v~~~~-----l~~~~~g~------------~e~~i~~~f~~a~ 312 (745)
....| +.++|+-|+|||+++|++...+++.... +++.+. +...++-+ .++.-+.+.+...
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 34443 6689999999999999777777544332 233222 22211111 1122222333333
Q ss_pred hhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCC-CCChhhhC-CCC
Q 004550 313 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD-MLDEALLR-PGR 390 (745)
Q Consensus 313 ~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~-~id~al~r-~gR 390 (745)
.. +-|.++++||.+.+... ..+.+..|.+.-++....-.++.||-..--. ..-+.++. .-|
T Consensus 128 ~g-------~r~v~l~vdEah~L~~~----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R 190 (269)
T COG3267 128 KG-------KRPVVLMVDEAHDLNDS----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR 190 (269)
T ss_pred hC-------CCCeEEeehhHhhhChh----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe
Confidence 22 23679999999988522 2333333443333333334567776442211 11222221 117
Q ss_pred ccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004550 391 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 456 (745)
Q Consensus 391 f~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 456 (745)
++..|++++.+.++-...++.+++.-.....+..+..+..+...+.| .+.-+.++|..|...|..
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 88778999999999999999998877666667777778888899998 556788888888777764
No 463
>PRK15115 response regulator GlrR; Provisional
Probab=98.11 E-value=1.2e-05 Score=90.87 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=99.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHhh-------ccccCCCCCeE
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDLH 325 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~-------~~~~~~~~~p~ 325 (745)
...++++|++|||||++|+++.+... ..+++.++|..+.... .-..+|..+... ...........
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 34699999999999999999988753 3578889988763211 111233221110 00000011123
Q ss_pred EEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCCCCCChhhhCCCCccc---
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV--- 393 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~--- 393 (745)
.|||||+|.|.+. ....|+..++.-. ...++.+|++|+.. +...+. .|+|..
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~ 294 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLY 294 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHH
Confidence 8999999998532 3334444443211 12268999999863 333332 344411
Q ss_pred ----eEEecCCCHHHHH----HHHHHHHccccc----cCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004550 394 ----QVEISLPDENGRL----QILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 394 ----~i~i~~Pd~~~r~----~Il~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
.+.|..|...+|. .+++.+++++.. ...-.++..+..|....-.-+.++|+++++.|+..
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3455666665554 344555544321 11112334466677766556789999999988754
No 464
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.10 E-value=1.5e-06 Score=84.93 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=54.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhh---CCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~---~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
...+++|+||||+|||++|.++|++ .|.+...+..++.+--...........+.++...+ ..+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee--
Confidence 3568999999999999999999864 47777777666543111000000112233344332 3689999985421
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV 648 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~ 648 (745)
.+....+.|..+++.--. ++-.|| |||..
T Consensus 122 ------~~~~~~~~l~~ii~~R~~--~~~tIi-TSN~~ 150 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERYE--RKPTII-TSNLS 150 (178)
T ss_dssp --------HHHHHCTHHHHHHHHH--T-EEEE-EESS-
T ss_pred ------ecccccccchhhhhHhhc--ccCeEe-eCCCc
Confidence 234444555555554322 233444 78754
No 465
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.07 E-value=3.8e-05 Score=88.83 Aligned_cols=126 Identities=12% Similarity=0.232 Sum_probs=78.4
Q ss_pred eEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCC------------------CCCCcEEEEEecCCC--CCCCcccc
Q 004550 597 SIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLP------------------PKGKKLLVIGTTSEV--SFLDSVGI 656 (745)
Q Consensus 597 ~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~------------------~~~~~v~vI~ttn~~--~~l~~~~l 656 (745)
++|||||++.|. ...++.|+..|+.-. +-..++.||+++|.. ..+++ .+
T Consensus 228 GtL~LDei~~L~----------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp-dL 296 (637)
T PRK13765 228 GVLFIDEINTLD----------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP-AL 296 (637)
T ss_pred cEEEEeChHhCC----------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH-HH
Confidence 677888888763 345666766664211 112356788888874 33455 56
Q ss_pred ccccc---eEEEcCCCC---HHHHHHHHHH----------ccCCCHHHHHHHHHHCC---------CCcHHHHHHHHHHH
Q 004550 657 CDAFS---VTYHVPTLK---TDDAKKVLKQ----------LNVFAEEDVDSASEALN---------DMPIKKLYMLIEMA 711 (745)
Q Consensus 657 ~~rf~---~~i~~p~~~---~~~~~~Il~~----------~~~~~~~d~~~~~~~~~---------~~~ir~ll~~l~~a 711 (745)
+.||. ..++|..-. .+.+..+++. ...++.+-+.+++..++ ....|++..+++.|
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a 376 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVA 376 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHH
Confidence 67776 566665422 4444444442 12467777777776554 24478888888888
Q ss_pred HccccCCchhhcccCCCCccHhHHHHHHH
Q 004550 712 AQGEQGGAAEAIYSGREKIKISHFYDCLQ 740 (745)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~I~~~~~~~al~ 740 (745)
...+.. .+...|+.+|+.+|+.
T Consensus 377 ~~~a~~-------~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 377 GDIARS-------EGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHh-------hccceecHHHHHHHHH
Confidence 776643 3556788899887764
No 466
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.06 E-value=1.1e-05 Score=86.19 Aligned_cols=118 Identities=15% Similarity=0.244 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHHHHhhC---CCCeEEEeccccccccchh---hHHHHHHH
Q 004550 513 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHES---TKCAQIVK 586 (745)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~g~~~~---~~~~~i~~ 586 (745)
...+.+.+..+++.+.. ...+++|+||||+|||++|.++|++. +..++.+..++.+ ..... ........
T Consensus 165 ~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~-~~l~~~~~~~~~~~~~ 239 (329)
T PRK06835 165 MEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI-EILREIRFNNDKELEE 239 (329)
T ss_pred HHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH-HHHHHHHhccchhHHH
Confidence 34455666666666543 22789999999999999999999764 6666666555432 11100 00001111
Q ss_pred HHHHHhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCC
Q 004550 587 VFEDAYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSE 647 (745)
Q Consensus 587 ~f~~a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~ 647 (745)
.++... ...+|+|||+.... .+....+.|..+++..-..+. -+|| |||.
T Consensus 240 ~~~~l~--~~DLLIIDDlG~e~--------~t~~~~~~Lf~iin~R~~~~k-~tIi-TSNl 288 (329)
T PRK06835 240 VYDLLI--NCDLLIIDDLGTEK--------ITEFSKSELFNLINKRLLRQK-KMII-STNL 288 (329)
T ss_pred HHHHhc--cCCEEEEeccCCCC--------CCHHHHHHHHHHHHHHHHCCC-CEEE-ECCC
Confidence 123322 33699999997643 234445566666665433222 2444 6665
No 467
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=2.6e-05 Score=81.30 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=81.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhcCCCcE-------EEccchhhhhc-cc----hhHHHHHHHHHHHHhhccccCCCC
Q 004550 255 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------IVNGPEVLSKF-VG----ETEKNIRDLFADAENDQRTRGDQS 322 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la~~l~~~~~~-------~v~~~~l~~~~-~g----~~e~~i~~~f~~a~~~~~~~~~~~ 322 (745)
+..+||+||+|+||+.+|.++|+.+.+..-- .-+-|++.--. .| -.-+.+|++-+.+... |.. +
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~-p~e---~ 94 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIH-PYE---S 94 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhC-ccC---C
Confidence 3479999999999999999999988542100 00111111000 01 1234556665555432 222 2
Q ss_pred CeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCC
Q 004550 323 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLP 400 (745)
Q Consensus 323 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~P 400 (745)
...|++||++|.+. ....|.||..++. ...++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 95 ~~kv~ii~~ad~mt-------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRMT-------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhcC-------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 34599999999984 4456778888884 55688999999999999999998 865 5666554
No 468
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=98.04 E-value=1.4e-05 Score=63.99 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHhcCCccccCcEEEEEEcCeEEEEEEEEeeecCcccccccccceecCCcEEEEEe
Q 004550 124 VDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEA 190 (745)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 190 (745)
+|.+++. +|+++|.|++|+.||.+.+.+.|..+.|+|++++| .+.+.++++|.+.+..
T Consensus 2 ~d~d~~~-~~~~~l~~~pv~~Gd~i~~~~~~~~~~~~V~~~~P--------~~~v~it~~T~i~i~~ 59 (64)
T PF02933_consen 2 FDGDFMA-YFKRQLEGRPVTKGDTIVFPFFGQALPFKVVSTEP--------SGPVIITEDTEIEIKE 59 (64)
T ss_dssp ECSHHHH-HHHHHHTTEEEETT-EEEEEETTEEEEEEEEEECS--------SSEEEEETTSEEEESS
T ss_pred CCccHHH-HHHHHHcCCCccCCCEEEEEeCCcEEEEEEEEEEc--------CCCEEECCCcEEEEcc
Confidence 5667777 99999999999999999999999999999999998 4578999999998874
No 469
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.00 E-value=0.00018 Score=73.17 Aligned_cols=129 Identities=20% Similarity=0.137 Sum_probs=80.1
Q ss_pred CeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCC------------CCCCChhhhCCCC
Q 004550 323 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR------------KDMLDEALLRPGR 390 (745)
Q Consensus 323 ~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~------------~~~id~al~r~gR 390 (745)
.|.+|||||+|.|--. .-.++|.-|.. ...+ ++|.+||+ |..|+-.++. |
T Consensus 288 vpGVLFIDEvHMLDIE----------cFsFlNrAlE~-----d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIE----------CFSFLNRALEN-----DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred ccceEEEeeehhhhhH----------HHHHHHHHhhh-----ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 4669999999988311 12233333322 1122 34445554 3446666766 6
Q ss_pred ccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 004550 391 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDE 470 (745)
Q Consensus 391 f~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~ 470 (745)
.- .|...+++.++..+||++.+..-. ....+..++.|......-+-+.--.|+..|...|.+|.-
T Consensus 350 ~l-II~t~py~~~d~~~IL~iRc~EEd---v~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~----------- 414 (454)
T KOG2680|consen 350 ML-IISTQPYTEEDIKKILRIRCQEED---VEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG----------- 414 (454)
T ss_pred hh-eeecccCcHHHHHHHHHhhhhhhc---cccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC-----------
Confidence 43 567778899999999999876432 122333456666666666666667788888888888742
Q ss_pred cCceeehhhHHHHHHh
Q 004550 471 ESIKVTMDDFLHALYE 486 (745)
Q Consensus 471 ~~~~it~~df~~al~~ 486 (745)
..+..+|+..+..-
T Consensus 415 --~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 415 --KVVEVDDIERVYRL 428 (454)
T ss_pred --ceeehhHHHHHHHH
Confidence 35667777776654
No 470
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.00 E-value=1.2e-05 Score=71.70 Aligned_cols=23 Identities=43% Similarity=0.931 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhc
Q 004550 258 MLLYGPPGTGKTLMARQIGKMLN 280 (745)
Q Consensus 258 iLL~GppGtGKT~lar~la~~l~ 280 (745)
|.||||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998873
No 471
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.00 E-value=2.1e-05 Score=85.25 Aligned_cols=103 Identities=20% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchh------HHHHHHHHHHHHhhccccCCCCCeE
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGET------EKNIRDLFADAENDQRTRGDQSDLH 325 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~------e~~i~~~f~~a~~~~~~~~~~~~p~ 325 (745)
..+|+|+.||||+|+|||+|.-.+...+....-..+.-.+++....... ..-+..+.+..... ..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~---------~~ 129 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE---------SR 129 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc---------CC
Confidence 4679999999999999999999999887542222233334433211111 11122233222222 23
Q ss_pred EEEEccchhhhhcCCCCCCCCcc-hhHHHHHHHHhccCccCCCcEEEEEEeCCC
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVESLNNVLLIGMTNRK 378 (745)
Q Consensus 326 Il~iDEid~l~~~~~~~~~~~~~-~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~ 378 (745)
+|+|||++.- .. ...++..|+..+= ..++++|+|+|++
T Consensus 130 lLcfDEF~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 130 LLCFDEFQVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred EEEEeeeecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 9999998742 11 1234444444431 2588999999985
No 472
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.99 E-value=3.8e-05 Score=78.02 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccch
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid 333 (745)
...+-.++||+|||||..++.+|+.+ +.+++..||++-++ ...+.++|.-+.... +++++||++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~l-G~~~~vfnc~~~~~------~~~l~ril~G~~~~G---------aW~cfdefn 94 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARAL-GRFVVVFNCSEQMD------YQSLSRILKGLAQSG---------AWLCFDEFN 94 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCT-T--EEEEETTSSS-------HHHHHHHHHHHHHHT----------EEEEETCC
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHh-CCeEEEeccccccc------HHHHHHHHHHHhhcC---------chhhhhhhh
Confidence 34577899999999999999999999 78889999987543 345677776555442 499999999
Q ss_pred hhhhcCCCCCCCCcchhHHHHH---HHHhccC-----------ccCCCcEEEEEEeCC----CCCCChhhhCCCCccceE
Q 004550 334 AICKSRGSTRDGTGVHDSIVNQ---LLTKIDG-----------VESLNNVLLIGMTNR----KDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~---LL~~~d~-----------~~~~~~v~vI~~tn~----~~~id~al~r~gRf~~~i 395 (745)
.|-.. +...+..+ +...+.. +.-..+.-+..+.|+ ...+++.++. +-+.+
T Consensus 95 rl~~~---------vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpv 162 (231)
T PF12774_consen 95 RLSEE---------VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPV 162 (231)
T ss_dssp CSSHH---------HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEE
T ss_pred hhhHH---------HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---Hhhee
Confidence 88421 12222122 2111111 111223445555663 3468888886 33488
Q ss_pred EecCCCHHHHHHHH
Q 004550 396 EISLPDENGRLQIL 409 (745)
Q Consensus 396 ~i~~Pd~~~r~~Il 409 (745)
.+..||.+...+++
T Consensus 163 am~~PD~~~I~ei~ 176 (231)
T PF12774_consen 163 AMMVPDLSLIAEIL 176 (231)
T ss_dssp E--S--HHHHHHHH
T ss_pred EEeCCCHHHHHHHH
Confidence 99999987555544
No 473
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.98 E-value=0.00017 Score=73.26 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=51.3
Q ss_pred eEEEcCCCCHHHHHHHHHHc----cCCCHHHHHHHHHHCC-CCcHHHHHHHHHHHHccccCCchhhcccCCCCccHhHHH
Q 004550 662 VTYHVPTLKTDDAKKVLKQL----NVFAEEDVDSASEALN-DMPIKKLYMLIEMAAQGEQGGAAEAIYSGREKIKISHFY 736 (745)
Q Consensus 662 ~~i~~p~~~~~~~~~Il~~~----~~~~~~d~~~~~~~~~-~~~ir~ll~~l~~a~~~~~~~~~~~~~~~~~~I~~~~~~ 736 (745)
.+|.-.||+.+|+++||+.. +..-.+|...++..+. .-+.|-.++++..|...+.. .....+..+|+.
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~k-------rk~~~v~~~di~ 423 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLK-------RKGKVVEVDDIE 423 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------hcCceeehhHHH
Confidence 46788899999999999963 2333445555555554 77888888888877776643 244568888888
Q ss_pred HHHHH
Q 004550 737 DCLQD 741 (745)
Q Consensus 737 ~al~~ 741 (745)
.++.=
T Consensus 424 r~y~L 428 (454)
T KOG2680|consen 424 RVYRL 428 (454)
T ss_pred HHHHH
Confidence 87763
No 474
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.98 E-value=4.2e-05 Score=79.14 Aligned_cols=160 Identities=22% Similarity=0.278 Sum_probs=96.9
Q ss_pred eeccCchhhHHHHHHHHHHHHHhcCCCCceeeeeccCCCCChhHHHHH-HH--hhCCCCeEEEe--cccc-----c----
Q 004550 507 VDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAAT-AG--IDSDFPFVKII--SAES-----M---- 572 (745)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~GppGtGKT~la~~-lA--~~~~~~~i~v~--~~~~-----l---- 572 (745)
.++.+...++-+++++-+.. +-..++++.||.|+|||.+... ++ .+.+-+|+.+. +--. +
T Consensus 27 ~g~~~~~~~l~~~lkqt~~~------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 27 FGVQDEQKHLSELLKQTILH------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred eehHHHHHHHHHHHHHHHHh------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 33444444555555444333 3456799999999999976544 33 35666665542 1100 0
Q ss_pred ---------cccchhhHHHHHHHHHHHHhc-----CCCeEEEEeccchhhhcCCCCCcchHHHHHHH-HHHHhcCCCCCC
Q 004550 573 ---------IGLHESTKCAQIVKVFEDAYK-----SPLSIIILDDIERLLEYVPIGPRFSNIISQTM-LVLLKRLPPKGK 637 (745)
Q Consensus 573 ---------~g~~~~~~~~~i~~~f~~a~~-----~~~~il~lDEid~l~~~~~~g~~~~~~~~~~L-l~~l~~~~~~~~ 637 (745)
.+.+.+...+++.++.....+ +.+-|.++||||-.++ -..|+| ..+++-......
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDisqs~r~ 170 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDISQSARA 170 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHHHhhcCC
Confidence 223444444555555554432 2233556689998752 223444 455555555567
Q ss_pred cEEEEEecCCCCCCCccccc--cccceE-EEc-CCCCHHHHHHHHHHcc
Q 004550 638 KLLVIGTTSEVSFLDSVGIC--DAFSVT-YHV-PTLKTDDAKKVLKQLN 682 (745)
Q Consensus 638 ~v~vI~ttn~~~~l~~~~l~--~rf~~~-i~~-p~~~~~~~~~Il~~~~ 682 (745)
.+.|||-|.+.+.++...-| +||... |++ |+...++...+++...
T Consensus 171 Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 171 PICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 89999999999988876544 999844 544 5555899999999753
No 475
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.97 E-value=1.6e-05 Score=89.58 Aligned_cols=178 Identities=24% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhc--CCCcEEEccchhhhhccchhHHHHHHHHHHHHhh-------ccccCCCCCe
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDL 324 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~--~~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~-------~~~~~~~~~p 324 (745)
....++++|++||||+++|+++..... ..+++.++|..+..... -..+|...... ....-.....
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 346799999999999999999987653 35788899886532211 11222211100 0000011123
Q ss_pred EEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCcc---------CCCcEEEEEEeCCCCCCChhhhCCCCccc--
Q 004550 325 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-- 393 (745)
Q Consensus 325 ~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~---------~~~~v~vI~~tn~~~~id~al~r~gRf~~-- 393 (745)
.+|||||||.|.+. ....|+..++.-. ...++.+|++|+..- .....+|+|..
T Consensus 235 gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l 298 (441)
T PRK10365 235 GTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDL 298 (441)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHH
Confidence 48999999998532 2334554443211 112578898887642 12223445532
Q ss_pred -----eEEecCCCHHHH----HHHHHHHHcccccc----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004550 394 -----QVEISLPDENGR----LQILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 453 (745)
Q Consensus 394 -----~i~i~~Pd~~~r----~~Il~~~~~~~~~~----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 453 (745)
.+.+..|...+| ..+++.++.++... ..-..+..+..|....-.-+.++|.++++.|+..
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 345555655444 34555555443211 1112233455555555444678899988887754
No 476
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.97 E-value=2.5e-05 Score=92.51 Aligned_cols=162 Identities=16% Similarity=0.224 Sum_probs=102.8
Q ss_pred eeeeccCCCCChhHHHHHHHhhCCCCeEEEecccccccc------chhhHHHHHHHHHH--H---HhcCCCeEEEEeccc
Q 004550 537 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL------HESTKCAQIVKVFE--D---AYKSPLSIIILDDIE 605 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~------~~~~~~~~i~~~f~--~---a~~~~~~il~lDEid 605 (745)
.+|++||||.|||+.|.++|.+.++..+..+....-.+. .+..+.+.+..-|. . .....--||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999876543111 11112223334440 0 111223499999999
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHHH----HHHHc
Q 004550 606 RLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAKK----VLKQL 681 (745)
Q Consensus 606 ~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~~----Il~~~ 681 (745)
-+.+ . .+..++.+..+.+.. ..-+|+++|..+....-.+ .+-+..++|+.|+.+.+.. |+...
T Consensus 439 ~~~~-~------dRg~v~~l~~l~~ks-----~~Piv~~cndr~~p~sr~~-~~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 439 GMFG-E------DRGGVSKLSSLCKKS-----SRPLVCTCNDRNLPKSRAL-SRACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred cccc-h------hhhhHHHHHHHHHhc-----cCCeEEEecCCCCccccch-hhhcceeeecCCcHHHHHhhhhhhhccc
Confidence 9874 2 233555565555532 2345667777765554222 4555789999999655544 44444
Q ss_pred cC-CCHHHHHHHHHHCCCCcHHHHHHHHHHHH
Q 004550 682 NV-FAEEDVDSASEALNDMPIKKLYMLIEMAA 712 (745)
Q Consensus 682 ~~-~~~~d~~~~~~~~~~~~ir~ll~~l~~a~ 712 (745)
.. ..+.++..++. ..++|+|+.++.+++-.
T Consensus 506 ~~ki~~~~l~~~s~-~~~~DiR~~i~~lq~~~ 536 (871)
T KOG1968|consen 506 GIKISDDVLEEISK-LSGGDIRQIIMQLQFWS 536 (871)
T ss_pred ceecCcHHHHHHHH-hcccCHHHHHHHHhhhh
Confidence 43 44455555544 56999999999998873
No 477
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=0.00011 Score=77.81 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH--hcCCC--cEEEccchhh------h----h---c------cchhHHHHHHHHH
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKM--LNGME--PKIVNGPEVL------S----K---F------VGETEKNIRDLFA 309 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~--l~~~~--~~~v~~~~l~------~----~---~------~g~~e~~i~~~f~ 309 (745)
...+-|.|+|++|+|||+||+.+++. ....+ ++.++...-. . . . ....+.....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 44567999999999999999999977 43222 1223322111 1 0 0 0112222233332
Q ss_pred HHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCC
Q 004550 310 DAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 389 (745)
Q Consensus 310 ~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~g 389 (745)
.... .+++|+||+++... .+..+...+.. ...+..+|.||.... +-....
T Consensus 97 ~L~~---------~~~LlVlDdv~~~~---------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~--- 146 (287)
T PF00931_consen 97 LLKD---------KRCLLVLDDVWDEE---------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLG--- 146 (287)
T ss_dssp HHCC---------TSEEEEEEEE-SHH---------------HH-------HC--HHSS-EEEEEESCGG-GGTTHH---
T ss_pred hhcc---------ccceeeeeeecccc---------------ccccccccccc--ccccccccccccccc-cccccc---
Confidence 2222 26799999988653 11222222111 123456666775532 222221
Q ss_pred CccceEEecCCCHHHHHHHHHHHHccccccCCCCCcccHHHHHHHcCCCCH
Q 004550 390 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 440 (745)
Q Consensus 390 Rf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 440 (745)
.-...++++..+.++-.++|...............+....++++.+.|..-
T Consensus 147 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 147 GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 114579999999999999999886543310011123346788999987543
No 478
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.97 E-value=5.7e-05 Score=78.15 Aligned_cols=166 Identities=17% Similarity=0.301 Sum_probs=97.6
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEE--Eccchhh----
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKI--VNGPEVL---- 293 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~--v~~~~l~---- 293 (745)
+-|+.++-+.+ .+++.....+ .....+++.||.|+|||++.-...... .+..++. +||.-..
T Consensus 26 l~g~~~~~~~l-~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHL-SELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHH-HHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45555555555 4443322212 345679999999999999876554431 2334443 3332111
Q ss_pred ---------------hhccchhHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHH
Q 004550 294 ---------------SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 358 (745)
Q Consensus 294 ---------------~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~ 358 (745)
.+..|...+++..++...+... ...+.+-|.++||+|.+++.. .+.++..|.+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~---~~t~~~ViFIldEfDlf~~h~---------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGD---ETTSGKVIFILDEFDLFAPHS---------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCC---CCCCceEEEEeehhhccccch---------hhHHHHHHHH
Confidence 1334445555666665555422 223445577778999987432 3334444544
Q ss_pred hccCccCCCcEEEEEEeCCCCC---CChhhhCCCCccce-EEecCC-CHHHHHHHHHHHH
Q 004550 359 KIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLEVQ-VEISLP-DENGRLQILQIHT 413 (745)
Q Consensus 359 ~~d~~~~~~~v~vI~~tn~~~~---id~al~r~gRf~~~-i~i~~P-d~~~r~~Il~~~~ 413 (745)
.-. .++.++.+||.|.+.+. +.....+ ||... |.++++ .-.+-.++++..+
T Consensus 164 isq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 433 23568999999988765 4567777 99765 666655 4567777777665
No 479
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.93 E-value=4.2e-05 Score=87.82 Aligned_cols=199 Identities=13% Similarity=0.108 Sum_probs=109.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcC-CCcEEEccchhhhhccchhHHHHHHHHHHHHh-hccccCCCCCeEEEEEccch
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEID 333 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~-~~~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~-~~~~~~~~~~p~Il~iDEid 333 (745)
.||+|.|++|||||+++++++..+.. .++..+..+--....+|.. .+...+..-.. ..|..-......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999999854 2333222111111222221 11111111010 01110011112399999999
Q ss_pred hhhhcCCCCCCCCcchhHHHHHHHHhccCc-----------cCCCcEEEEEEeCCC---CCCChhhhCCCCccceEEecC
Q 004550 334 AICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRK---DMLDEALLRPGRLEVQVEISL 399 (745)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~-----------~~~~~v~vI~~tn~~---~~id~al~r~gRf~~~i~i~~ 399 (745)
.+ .+.+++.|+.-|+.- ....++++|++-|.. ..+.++++. ||+..+.++.
T Consensus 104 ~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~ 168 (584)
T PRK13406 104 RL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDG 168 (584)
T ss_pred cC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCC
Confidence 76 456778888887631 123468889874432 348899998 9999999998
Q ss_pred CCHHHHH-------HHHHHHHccccccCCCCCcccHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 004550 400 PDENGRL-------QILQIHTNKMKENSFLAPDVNLQELAART--KNY-SGAELEGVAKSAVSFALNRQLSMDDLTKPVD 469 (745)
Q Consensus 400 Pd~~~r~-------~Il~~~~~~~~~~~~l~~~~~l~~la~~t--~g~-sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~ 469 (745)
|+..+.. +|.+..- .++ +- ..++..++.++..+ .|. +.+--..+++.|...|.-
T Consensus 169 ~~~~~~~~~~~~~~~I~~AR~-rl~-~v-~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL------------- 232 (584)
T PRK13406 169 LALRDAREIPIDADDIAAARA-RLP-AV-GPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAAL------------- 232 (584)
T ss_pred CChHHhcccCCCHHHHHHHHH-HHc-cC-CCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHH-------------
Confidence 8765422 2333221 111 11 12233344443332 233 444445566666555543
Q ss_pred ccCceeehhhHHHHHHhh
Q 004550 470 EESIKVTMDDFLHALYEI 487 (745)
Q Consensus 470 ~~~~~it~~df~~al~~~ 487 (745)
.....|+.+|+..++.-+
T Consensus 233 ~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 233 AGRTAVEEEDLALAARLV 250 (584)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 234567888888877654
No 480
>PRK06851 hypothetical protein; Provisional
Probab=97.93 E-value=0.00011 Score=79.36 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.8
Q ss_pred eeeeeccCCCCChhHHHHHHHhhC---CCCeEEEecc
Q 004550 536 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISA 569 (745)
Q Consensus 536 ~~~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~ 569 (745)
.-++|.|+||||||++++.++.++ |.......|+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 558999999999999999998754 6655555554
No 481
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=6.9e-05 Score=76.51 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=81.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE--E-----------Eccchhhhhcc---chhHHHHHHHHHHHHhhcc
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--I-----------VNGPEVLSKFV---GETEKNIRDLFADAENDQR 316 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~~~~~--~-----------v~~~~l~~~~~---g~~e~~i~~~f~~a~~~~~ 316 (745)
.+|..+||+||+|+||..+|.++|+.+-+..-. . -+-+++.--+. .-..+.+|++-+.......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 346689999999999999999999887432100 0 00111111000 1123345555444332110
Q ss_pred ccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEE
Q 004550 317 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 396 (745)
Q Consensus 317 ~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~ 396 (745)
.. ....|++|+++|.+. ....|.||..++. ...+.++|..|+.++.+.|.+++ |.. .+.
T Consensus 85 e~---~~~KV~II~~ae~m~-------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~ 143 (261)
T PRK05818 85 ES---NGKKIYIIYGIEKLN-------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYV 143 (261)
T ss_pred hc---CCCEEEEeccHhhhC-------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eee
Confidence 10 123599999999984 4466789998884 55689999999999999999999 865 456
Q ss_pred ecCC
Q 004550 397 ISLP 400 (745)
Q Consensus 397 i~~P 400 (745)
++.+
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 6665
No 482
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=0.00015 Score=67.52 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhcC
Q 004550 253 KHVKGMLLYGPPGTGKTLMARQIGKMLNG 281 (745)
Q Consensus 253 ~~~~giLL~GppGtGKT~lar~la~~l~~ 281 (745)
+....|.++|+||+||||++..++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 44567999999999999999999988853
No 483
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.92 E-value=9.8e-05 Score=76.80 Aligned_cols=203 Identities=17% Similarity=0.257 Sum_probs=114.9
Q ss_pred CCCcccccCccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccc
Q 004550 213 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 290 (745)
Q Consensus 213 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~ 290 (745)
+.-.|+. |.+.....+.++.++....... ..+|+.|..||||-++||++.... ...++..+||.
T Consensus 199 ~~~~F~~--~v~~S~~mk~~v~qA~k~AmlD------------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 199 DVSGFEQ--IVAVSPKMKHVVEQAQKLAMLD------------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred cccchHH--HhhccHHHHHHHHHHHHhhccC------------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 5666777 7777777777777776554332 248999999999999999887654 24578889997
Q ss_pred hhhhh-----ccchh--HHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhcc-C
Q 004550 291 EVLSK-----FVGET--EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID-G 362 (745)
Q Consensus 291 ~l~~~-----~~g~~--e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d-~ 362 (745)
.+-.. .+|.. .+.-..+|+.|... -+|+|||..+.+ ++...||..+. |
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~AngG-----------TVlLDeIgEmSp-------------~lQaKLLRFL~DG 320 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANGG-----------TVLLDEIGEMSP-------------RLQAKLLRFLNDG 320 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccCC-----------eEEeehhhhcCH-------------HHHHHHHHHhcCC
Confidence 66432 11211 12234567776654 899999987743 34555666653 2
Q ss_pred c-c-------CCCcEEEEEEeCCC--CCCChhhhCC---CCccceEEecCCCHHHHHH----HHHHH----HccccccCC
Q 004550 363 V-E-------SLNNVLLIGMTNRK--DMLDEALLRP---GRLEVQVEISLPDENGRLQ----ILQIH----TNKMKENSF 421 (745)
Q Consensus 363 ~-~-------~~~~v~vI~~tn~~--~~id~al~r~---gRf~~~i~i~~Pd~~~r~~----Il~~~----~~~~~~~~~ 421 (745)
. + -.-+|.||++|..+ +.....-.|. .|+. ++.+..|...+|.+ +.+.+ ..+.....+
T Consensus 321 tFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p 399 (511)
T COG3283 321 TFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP 399 (511)
T ss_pred ceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC
Confidence 1 1 12369999999764 1122111111 1333 45555565444432 22322 232221111
Q ss_pred CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 422 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 422 l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
-.+..-+..|.++----+-+++.+.+-.|+...
T Consensus 400 kl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 400 KLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred ccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 111122334444433345688888877777654
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=9.6e-05 Score=70.55 Aligned_cols=73 Identities=26% Similarity=0.289 Sum_probs=43.9
Q ss_pred eeeccCCCCChhHHHHHHHhhC---CCCeEEEecccccc---------------------cc-c-hhhHHHHHHHHHHHH
Q 004550 538 CLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMI---------------------GL-H-ESTKCAQIVKVFEDA 591 (745)
Q Consensus 538 ~Ll~GppGtGKT~la~~lA~~~---~~~~i~v~~~~~l~---------------------g~-~-~~~~~~~i~~~f~~a 591 (745)
++++||||+|||+++..++... +.+.+.+....... .. . ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998654 44544443222110 00 0 000111112234445
Q ss_pred hcCCCeEEEEeccchhhhc
Q 004550 592 YKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 592 ~~~~~~il~lDEid~l~~~ 610 (745)
....+.+++|||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5677899999999998754
No 485
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=6.3e-05 Score=72.19 Aligned_cols=139 Identities=20% Similarity=0.282 Sum_probs=71.3
Q ss_pred eeeeccCCCCChhHHHHHHHhhCC--------CCeEEEecccccccc------------chhhHHHHHHHHH-HHHhcCC
Q 004550 537 TCLLEGPSGSGKTALAATAGIDSD--------FPFVKIISAESMIGL------------HESTKCAQIVKVF-EDAYKSP 595 (745)
Q Consensus 537 ~~Ll~GppGtGKT~la~~lA~~~~--------~~~i~v~~~~~l~g~------------~~~~~~~~i~~~f-~~a~~~~ 595 (745)
-++++|+||+|||++++.++.... .+++-.......... ........+...+ ..+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 378999999999999999885421 122211111111000 0000111112211 2233566
Q ss_pred CeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCCHHHHH
Q 004550 596 LSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLKTDDAK 675 (745)
Q Consensus 596 ~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~~~~~~ 675 (745)
..+|+||-+|.+...... ...+.....|..++......+.+++|.+.+.....+.. .+ .. ...+.+++++.+++.
T Consensus 82 ~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~-~~-~~-~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRR-RL-KQ-AQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh--hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHH-hc-CC-CcEEEECCCCHHHHH
Confidence 789999999998743221 01233444455555552233344444433222211111 11 11 157999999999999
Q ss_pred HHHHH
Q 004550 676 KVLKQ 680 (745)
Q Consensus 676 ~Il~~ 680 (745)
+++++
T Consensus 157 ~~~~~ 161 (166)
T PF05729_consen 157 QYLRK 161 (166)
T ss_pred HHHHH
Confidence 99876
No 486
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00031 Score=74.18 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=86.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhcCCC------------cEEEccchhhhhccchhHHHHHHHHHHHHhhccccCCCCC
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKMLNGME------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSD 323 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l~~~~------------~~~v~~~~l~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~ 323 (745)
...||+|+.|+||+.+|+.+++.+.+.. +..++.. +. .-.-..++++.+......- ..+.
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~---~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSF---VQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCc---ccCC
Confidence 3588999999999999999999873311 1112100 00 0122345555544432210 0123
Q ss_pred eEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceEEecCCCHH
Q 004550 324 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDEN 403 (745)
Q Consensus 324 p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~ 403 (745)
..|++||++|.+. ....+.||..++. ...++++|..|+.++.+-+.+++ |.. .+++++|+.+
T Consensus 91 ~KvvII~~~e~m~-------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~ 152 (299)
T PRK07132 91 KKILIIKNIEKTS-------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQ 152 (299)
T ss_pred ceEEEEecccccC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHH
Confidence 4599999998773 4456778888885 44577888888888999999988 654 7899999988
Q ss_pred HHHHHHHH
Q 004550 404 GRLQILQI 411 (745)
Q Consensus 404 ~r~~Il~~ 411 (745)
+..+.|..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 88777653
No 487
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.86 E-value=0.00016 Score=76.39 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCceeeeeccCCCCChhHHHHHHHhh--C--CCCe---EEEecccc---c-------cccc-----hhhHHHHHHHHHHH
Q 004550 533 SPLVTCLLEGPSGSGKTALAATAGID--S--DFPF---VKIISAES---M-------IGLH-----ESTKCAQIVKVFED 590 (745)
Q Consensus 533 ~~~~~~Ll~GppGtGKT~la~~lA~~--~--~~~~---i~v~~~~~---l-------~g~~-----~~~~~~~i~~~f~~ 590 (745)
.....+.++|++|+|||++|+.+++. . .+.. +.+..... + ++.. .......+.+.+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 66788999999999999999999965 2 3332 22211111 0 1111 01111223333333
Q ss_pred HhcCCCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccceEEEcCCCC
Q 004550 591 AYKSPLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFSVTYHVPTLK 670 (745)
Q Consensus 591 a~~~~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~~~i~~p~~~ 670 (745)
.-+..+++|+||+++... .++.+...+... ..+.-||.||.......... .-...+++++++
T Consensus 97 ~L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~---~~~~kilvTTR~~~v~~~~~---~~~~~~~l~~L~ 158 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE------------DLEELREPLPSF---SSGSKILVTTRDRSVAGSLG---GTDKVIELEPLS 158 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH------------HH-------HCH---HSS-EEEEEESCGGGGTTHH---SCEEEEECSS--
T ss_pred hhccccceeeeeeecccc------------cccccccccccc---cccccccccccccccccccc---cccccccccccc
Confidence 334558999999997642 222232222211 11334555776654333221 126789999999
Q ss_pred HHHHHHHHHHc
Q 004550 671 TDDAKKVLKQL 681 (745)
Q Consensus 671 ~~~~~~Il~~~ 681 (745)
.++-.+++.+.
T Consensus 159 ~~ea~~L~~~~ 169 (287)
T PF00931_consen 159 EEEALELFKKR 169 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99999999975
No 488
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=4e-05 Score=73.21 Aligned_cols=23 Identities=39% Similarity=0.782 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhc
Q 004550 258 MLLYGPPGTGKTLMARQIGKMLN 280 (745)
Q Consensus 258 iLL~GppGtGKT~lar~la~~l~ 280 (745)
++++||||+|||++++.++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
No 489
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.77 E-value=9.7e-05 Score=74.31 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh--cCCCcEEEccch
Q 004550 251 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 291 (745)
Q Consensus 251 g~~~~~giLL~GppGtGKT~lar~la~~l--~~~~~~~v~~~~ 291 (745)
|++...-++++||||+|||+++..++... .+....+++..+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777889999999999999999988665 234556666654
No 490
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.77 E-value=7.4e-05 Score=83.79 Aligned_cols=192 Identities=23% Similarity=0.280 Sum_probs=106.5
Q ss_pred cccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc-CCCcEEEccchhhhh-----c
Q 004550 223 GGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLSK-----F 296 (745)
Q Consensus 223 gGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~-~~~~~~v~~~~l~~~-----~ 296 (745)
++++..++.+++++-... ...-.+|+.|.|||||-.++|++..... ..+++.+||..+-.. +
T Consensus 316 ~~~d~s~a~l~rk~~rv~------------~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVA------------ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESEL 383 (606)
T ss_pred cccCHHHHHHHHHHHHHh------------hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHH
Confidence 455666666655443222 2334699999999999999999997664 346777888665432 2
Q ss_pred cch--------hHHHHHHHHHHHHhhccccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhc--------
Q 004550 297 VGE--------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI-------- 360 (745)
Q Consensus 297 ~g~--------~e~~i~~~f~~a~~~~~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~-------- 360 (745)
+|. ..+..+..++.|.. ..+|+|||..|. -.+...||..+
T Consensus 384 FGy~~GafTga~~kG~~g~~~~A~g-----------GtlFldeIgd~p-------------~~~Qs~LLrVl~e~~v~p~ 439 (606)
T COG3284 384 FGYVAGAFTGARRKGYKGKLEQADG-----------GTLFLDEIGDMP-------------LALQSRLLRVLQEGVVTPL 439 (606)
T ss_pred hccCccccccchhccccccceecCC-----------CccHHHHhhhch-------------HHHHHHHHHHHhhCceecc
Confidence 221 11222233333322 289999998774 12333344443
Q ss_pred cCccCCCcEEEEEEeCCCCCCChhhhCCCCccce-------EEecCCCH---HHHHHHHHHHHccccc-cCCCCCcccHH
Q 004550 361 DGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ-------VEISLPDE---NGRLQILQIHTNKMKE-NSFLAPDVNLQ 429 (745)
Q Consensus 361 d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~-------i~i~~Pd~---~~r~~Il~~~~~~~~~-~~~l~~~~~l~ 429 (745)
++-...-+|.||++|+++= ..+.+-|||..- +.|.+|.. .++...|..++++... ...+.++. +.
T Consensus 440 g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~ 515 (606)
T COG3284 440 GGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LA 515 (606)
T ss_pred CCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HH
Confidence 3333334689999999852 344455665432 34445544 4444444444433222 12233222 33
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q 004550 430 ELAARTKNYSGAELEGVAKSAVSFA 454 (745)
Q Consensus 430 ~la~~t~g~sg~dl~~l~~~A~~~a 454 (745)
.|...----+-+++.++++.++..+
T Consensus 516 ~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 516 RLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 3333332236789999998887543
No 491
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.77 E-value=3.6e-05 Score=83.44 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCCCceeeeeccCCCCChhHHHHHHHhhCCCC-eEEEecccccccc----ch-hhHHHHHHHHHHHHhcCCCeEEEEecc
Q 004550 531 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFP-FVKIISAESMIGL----HE-STKCAQIVKVFEDAYKSPLSIIILDDI 604 (745)
Q Consensus 531 ~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~-~i~v~~~~~l~g~----~~-~~~~~~i~~~f~~a~~~~~~il~lDEi 604 (745)
...++.|++||||+|+|||++.-.+...+... -.++.-.+.+... .. .....-+..+-+... ....+|+|||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeee
Confidence 34678999999999999999999987665431 0111000111000 00 000111223322222 23359999999
Q ss_pred chhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCC-CCCCcc
Q 004550 605 ERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEV-SFLDSV 654 (745)
Q Consensus 605 d~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~-~~l~~~ 654 (745)
+-- +++ ...++..|+..+-. +++++|+|+|++ +.|-+.
T Consensus 137 ~V~----Dia---DAmil~rLf~~l~~-----~gvvlVaTSN~~P~~Ly~~ 175 (362)
T PF03969_consen 137 QVT----DIA---DAMILKRLFEALFK-----RGVVLVATSNRPPEDLYKN 175 (362)
T ss_pred ecc----chh---HHHHHHHHHHHHHH-----CCCEEEecCCCChHHHcCC
Confidence 651 111 23455555554432 378999999984 444433
No 492
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.74 E-value=9e-05 Score=72.65 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHHHHHccCCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhc
Q 004550 222 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 280 (745)
Q Consensus 222 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~ 280 (745)
+.|-+++++++ ...+. .. .-..++.++|+|++|+|||++++++...+.
T Consensus 2 fvgR~~e~~~l-~~~l~-~~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERL-RDLLD-AA---------QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHH-HHTTG-GT---------SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHH-HH---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46888999988 55543 21 124457899999999999999999887774
No 493
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=0.00011 Score=73.94 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.0
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 004550 255 VKGMLLYGPPGTGKTLMARQIG 276 (745)
Q Consensus 255 ~~giLL~GppGtGKT~lar~la 276 (745)
|..+|+||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999986
No 494
>PHA00729 NTP-binding motif containing protein
Probab=97.71 E-value=0.00012 Score=73.53 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 004550 256 KGMLLYGPPGTGKTLMARQIGKML 279 (745)
Q Consensus 256 ~giLL~GppGtGKT~lar~la~~l 279 (745)
.+++|+|+||||||++|.++++.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999986
No 495
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.71 E-value=0.0012 Score=69.77 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=103.7
Q ss_pred hcCCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccc------------cc--cch-----h--hHHHHHHHH
Q 004550 529 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM------------IG--LHE-----S--TKCAQIVKV 587 (745)
Q Consensus 529 ~~~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l------------~g--~~~-----~--~~~~~i~~~ 587 (745)
....+-|..+.+||-+|||||.+.+.+-+.++.+++-+++-+.+ ++ ... + +.....-..
T Consensus 24 ~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~ 103 (438)
T KOG2543|consen 24 NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYL 103 (438)
T ss_pred CCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHH
Confidence 34445677889999999999999999999999998888766542 11 011 1 111222334
Q ss_pred HHH---HhcC-CCeEEEEeccchhhhcCCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCccccccccc-e
Q 004550 588 FED---AYKS-PLSIIILDDIERLLEYVPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSVGICDAFS-V 662 (745)
Q Consensus 588 f~~---a~~~-~~~il~lDEid~l~~~~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~~l~~rf~-~ 662 (745)
|.. +.+. ..-.|++|.+|.+-+ +...+++.|+.+-+-.+.. .-++++..+..+..... -.|.++ .
T Consensus 104 l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~~-~i~iils~~~~e~~y~~--n~g~~~i~ 173 (438)
T KOG2543|consen 104 LVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNEP-TIVIILSAPSCEKQYLI--NTGTLEIV 173 (438)
T ss_pred HHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCCC-ceEEEEeccccHHHhhc--ccCCCCce
Confidence 433 2222 234779999999863 3356777776655444332 22233333333322111 014454 5
Q ss_pred EEEcCCCCHHHHHHHHHHccC--CCHHHHHHH----HHHCC--CCcHHHHHHHHHHHHcc
Q 004550 663 TYHVPTLKTDDAKKVLKQLNV--FAEEDVDSA----SEALN--DMPIKKLYMLIEMAAQG 714 (745)
Q Consensus 663 ~i~~p~~~~~~~~~Il~~~~~--~~~~d~~~~----~~~~~--~~~ir~ll~~l~~a~~~ 714 (745)
.++||.|+.+++..|+.+... ...+-..+. ++... -.+++++..++..+-..
T Consensus 174 ~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpk 233 (438)
T KOG2543|consen 174 VLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPK 233 (438)
T ss_pred EEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 689999999999999998543 221111222 22211 34888888888777543
No 496
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.70 E-value=0.00017 Score=72.48 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=58.7
Q ss_pred ceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccc-cccccc--------hhhHHHHHHHHHHHHh--cCCCeEEEEec
Q 004550 535 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE-SMIGLH--------ESTKCAQIVKVFEDAY--KSPLSIIILDD 603 (745)
Q Consensus 535 ~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~-~l~g~~--------~~~~~~~i~~~f~~a~--~~~~~il~lDE 603 (745)
+..+|+||+||+|||++|+.++.. ..++...... .+.|.. .....+.+.+.+..+. ..++.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 355999999999999999998732 1122222211 111110 0011122333333222 35678999999
Q ss_pred cchhhh------cC--C--CC-CcchHHHHHHHHHHHhcCCCCCCcEEEEEecC
Q 004550 604 IERLLE------YV--P--IG-PRFSNIISQTMLVLLKRLPPKGKKLLVIGTTS 646 (745)
Q Consensus 604 id~l~~------~~--~--~g-~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn 646 (745)
|+.|.. .+ . +. ......+.+.++.+|+.+...+..|+++|-..
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~ 143 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWEL 143 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEeec
Confidence 998764 11 1 11 11123345556666655545566788777553
No 497
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00065 Score=75.10 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCCCceeeeeccCCCCChhHHHHHHHhhCCCCeEEEeccccccccchhhHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 004550 531 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEY 610 (745)
Q Consensus 531 ~~~~~~~~Ll~GppGtGKT~la~~lA~~~~~~~i~v~~~~~l~g~~~~~~~~~i~~~f~~a~~~~~~il~lDEid~l~~~ 610 (745)
...+. -++++||.+||||++++.+.....-.++.++..+......+- .+..+.+..++......||||||..+-
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l---~d~~~~~~~~~~~~~~yifLDEIq~v~-- 107 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL---LDLLRAYIELKEREKSYIFLDEIQNVP-- 107 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH---HHHHHHHHHhhccCCceEEEecccCch--
Confidence 33444 789999999999999988887765556666555543221111 233344444444455799999999863
Q ss_pred CCCCCcchHHHHHHHHHHHhcCCCCCCcEEEEEecCCCCCCCcc-ccccccceEEEcCCCCHHHHHH
Q 004550 611 VPIGPRFSNIISQTMLVLLKRLPPKGKKLLVIGTTSEVSFLDSV-GICDAFSVTYHVPTLKTDDAKK 676 (745)
Q Consensus 611 ~~~g~~~~~~~~~~Ll~~l~~~~~~~~~v~vI~ttn~~~~l~~~-~l~~rf~~~i~~p~~~~~~~~~ 676 (745)
.+...+..+.+.... ++++.|.++..-..... .+.|| ...+.+.|++..|...
T Consensus 108 ---------~W~~~lk~l~d~~~~---~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 ---------DWERALKYLYDRGNL---DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLK 161 (398)
T ss_pred ---------hHHHHHHHHHccccc---eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHh
Confidence 244555555554321 55555544443333332 56678 6688999999777754
No 498
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00029 Score=65.65 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CceeeeeccCCCCChhHHHHHHHhhC
Q 004550 534 PLVTCLLEGPSGSGKTALAATAGIDS 559 (745)
Q Consensus 534 ~~~~~Ll~GppGtGKT~la~~lA~~~ 559 (745)
....+.++|+||+|||+++..+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45678999999999999999999543
No 499
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00076 Score=70.70 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=85.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhcCCCcEE-------E--------ccchhhhhc-cc--hhHHHHHHHHHHHHhhc
Q 004550 254 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-------V--------NGPEVLSKF-VG--ETEKNIRDLFADAENDQ 315 (745)
Q Consensus 254 ~~~giLL~GppGtGKT~lar~la~~l~~~~~~~-------v--------~~~~l~~~~-~g--~~e~~i~~~f~~a~~~~ 315 (745)
-+..+||+|| +||+++|+.+|+.+.+..... - +-+++..-. .| -.-+.+|++...+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~- 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS- 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC-
Confidence 3457999996 689999999998874322100 0 112221100 11 1235667766655442
Q ss_pred cccCCCCCeEEEEEccchhhhhcCCCCCCCCcchhHHHHHHHHhccCccCCCcEEEEEEeCCCCCCChhhhCCCCccceE
Q 004550 316 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 395 (745)
Q Consensus 316 ~~~~~~~~p~Il~iDEid~l~~~~~~~~~~~~~~~~~~~~LL~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i 395 (745)
|..+ ...|++||++|.+. ....|.||..++. ...+.++|..|+.++.+-|.+++ |.. .+
T Consensus 100 p~~~---~~kV~II~~ad~m~-------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i 158 (290)
T PRK07276 100 GYEG---KQQVFIIKDADKMH-------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IF 158 (290)
T ss_pred cccC---CcEEEEeehhhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-ee
Confidence 3322 23599999999984 3456788888884 44578999999999999999999 865 67
Q ss_pred EecCCCHHHHHHHHH
Q 004550 396 EISLPDENGRLQILQ 410 (745)
Q Consensus 396 ~i~~Pd~~~r~~Il~ 410 (745)
.|+. +.+...+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7765 5555555554
No 500
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.0023 Score=70.60 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=39.0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHcc-CCChhHHhhhCCCCCceEEEEcCCCChHHHHHHHHHHHhcCCCcE
Q 004550 214 EFNLQSLGIGGLSAEFADIFRRAFASR-VFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK 285 (745)
Q Consensus 214 ~~~~~~~~igGl~~~~~~i~~~~~~~~-~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~la~~l~~~~~~ 285 (745)
+-+.++ +.=..+.++++ ++++..- ...| + -..+=+||+||+||||||.++.+++++ +..+.
T Consensus 78 P~t~ee--LAVHkkKI~eV-k~WL~~~~~~~~----~---l~~~iLLltGPsGcGKSTtvkvLskel-g~~~~ 139 (634)
T KOG1970|consen 78 PRTLEE--LAVHKKKISEV-KQWLKQVAEFTP----K---LGSRILLLTGPSGCGKSTTVKVLSKEL-GYQLI 139 (634)
T ss_pred cccHHH--HhhhHHhHHHH-HHHHHHHHHhcc----C---CCceEEEEeCCCCCCchhHHHHHHHhh-Cceee
Confidence 344455 55566667777 6766510 0111 1 122348899999999999999999998 34333
Done!