Query 004550
Match_columns 745
No_of_seqs 494 out of 4830
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:44:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004550.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1854-1857//hhsearch_pdb/004550hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 775.4 33.3 679 13-743 24-744 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 583.2 21.2 617 13-681 24-660 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 405.7 30.7 288 175-491 102-393 (405)
4 4b4t_I 26S protease regulatory 1.0 1 1 398.6 28.5 324 134-491 96-427 (437)
5 4b4t_L 26S protease subunit RP 1.0 1 1 393.7 29.0 288 175-491 135-426 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 393.6 29.6 289 175-492 135-427 (434)
7 4b4t_H 26S protease regulatory 1.0 1 1 391.0 26.5 288 175-491 163-454 (467)
8 4b4t_K 26S protease regulatory 1.0 1 1 383.2 30.6 288 175-491 126-419 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 381.8 12.5 266 211-492 470-748 (806)
10 3hu3_A Transitional endoplasmi 1.0 1 1 376.5 39.5 444 13-507 24-483 (489)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=775.40 Aligned_cols=679 Identities=25% Similarity=0.356 Sum_probs=546.7
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCCC-CCCCEEEEEECC---EEEEEEEEECCCCCCCCEEECHHHHHCCCCCC
Q ss_conf 23899304994446542799595212134789-997258999399---08999984089989993753697772258568
Q 004550 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVP-NSNLFLASVAGD---SFVLSLITSHPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 13 ~~l~V~~~p~~~~~~tn~v~v~~~d~~~l~~~-G~~~~~v~i~~~---~~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
.+|.|..+.+++ .+.|++||++|.+|++. | .+|.|.|+ ..++ .+.+++++++|.|+||+.+|+|+++++
T Consensus 24 ~~~~v~~~~~~d---~~~~~~~~~~~~~l~~~~g---d~v~i~g~~~~~~~~-~~~~~~~~~~~~i~~~~~~r~n~~v~~ 96 (806)
T 3cf2_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVC-IVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (806)
T ss_dssp TEEECBCCSSCC---TTEEEECHHHHHHTTCCSS---CEEEEECGGGCBCCE-EEEECTTSBTTBCEECHHHHHTTTCCT
T ss_pred CEEEECCCCCCC---CCEEEECHHHHHHCCCCCC---CEEEEECCCCCEEEE-EECCCCCCCCCEEEECHHHHHHCCCCC
T ss_conf 448973677887---8989978999987699999---989998079755999-984888888997996899997669999
Q ss_pred CCEEEEEEEC-CCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCEEEEEECCEEEEEEEEEEE
Q ss_conf 9949999949-9986313658987544405886543368889999998811--882006958999975917999998865
Q 004550 89 GDHVSLNRFI-PPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAA 165 (745)
Q Consensus 89 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~ 165 (745)
||.|+|+++. ++ .+..+++..- . .....+....+..+++..|. ++++..|+.+.+...+..+.|+|++++
T Consensus 97 gd~V~v~~~~~~~---~a~~v~l~p~--~--~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~ 169 (806)
T 3cf2_A 97 GDVISIQPCPDVK---YGKRIHVLPI--D--DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD 169 (806)
T ss_dssp TCEEEEEECCCCC---BCSBEEEEEB--T--TTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEES
T ss_pred CCEEEEEECCCCC---CCCEEEEECC--C--CCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEE
T ss_conf 7989999899988---6778999346--4--0021033457999999998756872467998999438857989999985
Q ss_pred ECCCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 35855446554413468858999726898514411466766553346777642267555099999999999872689935
Q 004550 166 VEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPH 245 (745)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~ 245 (745)
| ...+.++++|.+.+....... .. .....|+++|+| |||+++++++| ++++.+|+.+|+
T Consensus 170 P--------~~~~~v~~~T~i~~~~~~~~~---~~-------~~~~~~~v~~~d--IgGl~~~~~~l-~e~v~~pl~~p~ 228 (806)
T 3cf2_A 170 P--------SPYCIVAPDTVIHCEGEPIKR---ED-------EEESLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHPA 228 (806)
T ss_dssp S--------SSEEECCTTSBCCBCSCCBCC---CT-------TSCCSSSCCGGG--CCSCCTTHHHH-HHHHHHHHHCCG
T ss_pred C--------CCCEEECCCCEEEEECCCCCC---CC-------CCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHCCCHH
T ss_conf 7--------987698898379992666676---65-------334589999035--14999999999-999998751989
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 77460998885199993798939999999999945998489714102210102049999999999982002249999817
Q 004550 246 VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLH 325 (745)
Q Consensus 246 ~~~~lg~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~ 325 (745)
+|..+|+++|+|||||||||||||++||++|+++ +.+++.++++++.++|.|+++++++.+|+.|.... ||
T Consensus 229 ~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~--------Ps 299 (806)
T 3cf2_A 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PA 299 (806)
T ss_dssp GGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSC--------SE
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CE
T ss_conf 8863589999758977989998899999999971-98399997379543331678999999999999729--------92
Q ss_pred EEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHH
Q ss_conf 99992622543028998888840467999999740396578958999980899877954209999541599539997789
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGR 405 (745)
Q Consensus 326 II~iDEid~l~~~~~~~~~~~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r 405 (745)
||||||+|+++++|+...+ +...+++++|+..||++...++++||++||+++.||++++|||||+++|++++||.++|
T Consensus 300 IIfIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 300 IIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp EEEEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred EEEEEHHCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHH
T ss_conf 9998510023344577887--39999999999997466666987999966980326988857863616886689798999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCEEEHHHHH
Q ss_conf 999999970543467888852289999873999989999999999999898302356789987----6568256034488
Q 004550 406 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDFL 481 (745)
Q Consensus 406 ~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~it~~df~ 481 (745)
.+||+.|+++++ +..++++..+|..|+||+|+||..+|++|.+.|++|.....+..... ......++++||.
T Consensus 378 ~~IL~~~l~~~~----~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~ 453 (806)
T 3cf2_A 378 LEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (806)
T ss_dssp HHHHHHTCSSSE----ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHH
T ss_pred HHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHH
T ss_conf 999999856899----8864389999975689989999999999999999841451200013320455225565199999
Q ss_pred HHHHHHHCCCCC----CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 898722013455----5651211335630212673135899999999887741799851321006899993499999986
Q 004550 482 HALYEIVPAFGA----STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGI 557 (745)
Q Consensus 482 ~al~~~~ps~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLl~Gp~G~GKT~lA~~iA~ 557 (745)
.|+..++|+... ..+.+.|..++|+...+..+.+.+.++..+.+.+...+..++.++|||||||||||++|+++|.
T Consensus 454 ~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 454 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp HHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99972878311234445788788881788999999999997566689999714888886079866877896399999999
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC----CCCCHHHHHHHHHHHHHCCC
Q ss_conf 07999599803631002102357779999999873299749999541211100899----97403789999999971489
Q 004550 558 DSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPI----GPRFSNIISQTMLVLLKRLP 633 (745)
Q Consensus 558 ~~~~~fi~i~~~~~l~g~~~~~~~~~i~~if~~a~~~~~~ii~lDEid~l~~~~~~----g~~~s~~~~~~Ll~~l~~~~ 633 (745)
+++.+|+.+.+++ +++.|.++.++.++++|+.|++..||||||||||+++..|+. +...++++.++||.+|+++.
T Consensus 534 e~~~~f~~v~~~~-l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 534 ECQANFISIKGPE-LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp TTTCEEEECCHHH-HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred HHCCCEEEECCCH-HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8389668742411-210334368999999999999729963520425677631588888986699999999999974878
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHCC----CCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999849999935997877811224-5541377738999988999999814----89999999999878999699999999
Q 004550 634 PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQLN----VFAEEDVDSASEALNDMPIKKLYMLI 708 (745)
Q Consensus 634 ~~~~~v~vi~ttn~~~~l~~~~l~-~rf~~~i~~~~~~~~~~~~il~~~~----~~~~~di~~~~~~~~~~~ir~ll~~~ 708 (745)
. ..+|+||||||+|+.||++.+| +||+..++||+|+.+++.+||+... ...+.|+..+.....+.+.+.+..++
T Consensus 613 ~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~ 691 (806)
T 3cf2_A 613 T-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp S-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHH
T ss_pred C-CCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 7-799899993798043898471778550799979969999999999985679998778999999768999999999999
Q ss_pred HHHHCCCCCCCH----------------H--HCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999802348840----------------0--0015898766848999999874
Q 004550 709 EMAAQGEQGGAA----------------E--AIYSGREKIKISHFYDCLQDMV 743 (745)
Q Consensus 709 ~~a~~~~~~~~~----------------~--~~~~~~~~I~~~~~~~al~~~~ 743 (745)
..|+..+-.... . ........|+.+||.+|+..+.
T Consensus 692 ~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 744 (806)
T 3cf2_A 692 QRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp HHHHHHHHHHHHC-----------------------CCC----CCTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999999985644433301574100123345668647999999998679
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=583.23 Aligned_cols=617 Identities=26% Similarity=0.381 Sum_probs=482.6
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCCC-CCCCEEEEEECC---EEEEEEEEECCCCCCCCEEECHHHHHCCCCCC
Q ss_conf 23899304994446542799595212134789-997258999399---08999984089989993753697772258568
Q 004550 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVP-NSNLFLASVAGD---SFVLSLITSHPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 13 ~~l~V~~~p~~~~~~tn~v~v~~~d~~~l~~~-G~~~~~v~i~~~---~~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
.+|+|..+...+. +.|+++|+.|.+|++. | .+|.|.|+ .+|. .+++.++++.+.|+|++..|+|+|+.+
T Consensus 24 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (806)
T 1ypw_A 24 NRLIVDEAINEDN---SVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVC-IVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (806)
T ss_dssp TEEEEECCSSCCS---SCEEECHHHHHHHTCCTT---CEEEEEETTTEECCE-EEEECSSSCTTEEECCHHHHTTTTCCT
T ss_pred CEEEECCCCCCCC---CEEEECHHHHHHCCCCCC---CEEEEECCCCCCEEE-EEECCCCCCCCEEEECHHHHHHCCCCC
T ss_conf 4589726767768---879888999997599999---889993686573799-996478889986996489996639888
Q ss_pred CCEEEEEEEC-CCCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCEEEEEECCEEEEEEEEEEE
Q ss_conf 9949999949-9986313658987544405886543368889999998811--882006958999975917999998865
Q 004550 89 GDHVSLNRFI-PPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAA 165 (745)
Q Consensus 89 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~ 165 (745)
||.|+|+++. ++ +...+++... .... ..+..+.+..+++.+|. ++++..|+.+.+......+.|+|+.+.
T Consensus 97 ~~~v~~~~~~~~~---~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~ 169 (806)
T 1ypw_A 97 GDVISIQPCPDVK---YGKRIHVLPI--DDTV--EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD 169 (806)
T ss_dssp TCEEEEEECTTCC---BCSEEEEEEC--TTTS--SSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEET
T ss_pred CCEEEEEECCCCC---CCCEEEEECC--CCCH--HHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECC
T ss_conf 9989999887787---5768998078--6522--2115506789999986007832268987995478760577887336
Q ss_pred ECCCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 35855446554413468858999726898514411466766553346777642267555099999999999872689935
Q 004550 166 VEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPH 245 (745)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~ 245 (745)
| .....+.+.|.+.+....... .... ...+.++|++ |+|++++++++ ++++..++.+|+
T Consensus 170 p--------~~~~~v~~~t~~~~~~~~~~~---~~~~-------~~~~~v~~~d--i~G~~~~~~~l-~e~i~~~l~~~~ 228 (806)
T 1ypw_A 170 P--------SPYCIVAPDTVIHCEGEPIKR---EDEE-------ESLNEVGYDD--VGGCRKQLAQI-KEMVELPLRHPA 228 (806)
T ss_dssp T--------TTCCBCCSSSEEEECSCCCCC---CTTS-------CCSSSCCGGG--CCSCSGGGGHH-HHHHHHHHHCGG
T ss_pred C--------CCCCEECCCEEEEECCCCCCC---HHHH-------CCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHH
T ss_conf 8--------887332688699855865541---1221-------1357899888--28809999999-999998742989
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 77460998885199993798939999999999945998489714102210102049999999999982002249999817
Q 004550 246 VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLH 325 (745)
Q Consensus 246 ~~~~lg~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~ 325 (745)
++..+++.++.++||+||||||||++|++++..+ ...++.++++++.+.+.|+.+..++.+|..+.... |+
T Consensus 229 ~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~--------p~ 299 (806)
T 1ypw_A 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PA 299 (806)
T ss_dssp GGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC--------SE
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC--------CC
T ss_conf 9986388999738998939998799999999971-99689997557654410158999999999998649--------95
Q ss_pred EEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHH
Q ss_conf 99992622543028998888840467999999740396578958999980899877954209999541599539997789
Q 004550 326 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGR 405 (745)
Q Consensus 326 II~iDEid~l~~~~~~~~~~~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r 405 (745)
++|+||+|.++++++.... ....+++.+++..+++.....++++|++||+++.+|+++++++||+..+.++.|+.++|
T Consensus 300 il~iDEid~l~~~~~~~~~--~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp EEEEESGGGTSCTTSCCCS--HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHH
T ss_pred EEEECCHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 7983007775111466631--68899999999986541146617876023981004999864655444355699999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCCEEEHHHHH
Q ss_conf 9999999705434678888522899998739999899999999999998983023567899----876568256034488
Q 004550 406 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTK----PVDEESIKVTMDDFL 481 (745)
Q Consensus 406 ~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~----~~~~~~~~it~~df~ 481 (745)
.+|++.+++++. +..+.++..++..++||+++++..++++|...++++......... ........++.+||.
T Consensus 378 ~~il~~~~~~~~----l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~ 453 (806)
T 1ypw_A 378 LEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (806)
T ss_dssp HHHHHHTTTTSC----CCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHH
T ss_pred HHHHHHHHHCCC----CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999873387----7622006777776147536899999999999987642010115542010124445555566531
Q ss_pred HHHHHHHCCCCC----CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 898722013455----5651211335630212673135899999999887741799851321006899993499999986
Q 004550 482 HALYEIVPAFGA----STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGI 557 (745)
Q Consensus 482 ~al~~~~ps~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLl~Gp~G~GKT~lA~~iA~ 557 (745)
.++....|+... ..+.+.|....|+......+.+.+.+.....+.+...+..++.++||+||||||||++|+++|.
T Consensus 454 ~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 454 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp HHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 11123571444200025754211112443022221899997555363989754888775368977999878999999999
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCC----CCHHHHHHHHHHHHHCCC
Q ss_conf 0799959980363100210235777999999987329974999954121110089997----403789999999971489
Q 004550 558 DSDFPFVKIISAESMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVPIGP----RFSNIISQTMLVLLKRLP 633 (745)
Q Consensus 558 ~~~~~fi~i~~~~~l~g~~~~~~~~~i~~if~~a~~~~~~ii~lDEid~l~~~~~~g~----~~s~~~~~~Ll~~l~~~~ 633 (745)
.++.+|+.+.+++ +.+.+.++....++.+|+.|+...|||+||||||++...+.... .....+++.|+..|++..
T Consensus 534 ~~~~~~i~v~~~~-l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 534 ECQANFISIKGPE-LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHTCCCCCCCCSS-STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCCEEEEECHH-HHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8489879986167-655305754788999999987069859999874454211268777764168999999999875456
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf 999849999935997877811224-554137773899998899999981
Q 004550 634 PKGKKLLVIGTTSEVSFLDSVGIC-DAFSVTYHVPTLKTDDAKKVLKQL 681 (745)
Q Consensus 634 ~~~~~v~vi~ttn~~~~l~~~~l~-~rf~~~i~~~~~~~~~~~~il~~~ 681 (745)
...+++||+|||+++.+|++.++ +||+..++|++|+.+++..|++..
T Consensus 613 -~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 660 (806)
T 1ypw_A 613 -TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTT
T ss_pred -CCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf -668769998438712279878376556730555997999999999998
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=405.73 Aligned_cols=288 Identities=31% Similarity=0.525 Sum_probs=256.0
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCC-CC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5441346885899972689851441146-67--66553346777642267555099999999999872689935774609
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQR-EG--ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg 251 (745)
.+...+.+.+.+.+.........+.+.. ++ ....+.+.|+++|+| |||+++++++| ++++..|+.+|++|..+|
T Consensus 102 ~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--IgGl~~~k~~l-~e~v~~Pl~~pe~f~~~g 178 (405)
T 4b4t_J 102 INVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDM--VGGLTKQIKEI-KEVIELPVKHPELFESLG 178 (405)
T ss_dssp SCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCHHHHHHHT
T ss_pred CCHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHCCCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 578668875344230554011120576658466613555799998888--28889999999-999999874999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98885199993798939999999999945998489714102210102049999999999982002249999817999926
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDE 331 (745)
+++|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|+++++++.+|..|+... ||||||||
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a--------P~IIFiDE 249 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA--------PSIIFMDE 249 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC--------SEEEEEES
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEC
T ss_conf 9988825885899998789999999851-88852888689511335468999999999998709--------94676533
Q ss_pred CHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 22543028998888-84046799999974039657895899998089987795420999954159953999778999999
Q 004550 332 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~-~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|+++++|....++ .....+++++||..|||+....+++||++||+|+.||||++|||||++.|++++||.++|.+||+
T Consensus 250 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 41111577888999768999999999996043388887578812698144899672877676699769969999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC
Q ss_conf 99705434678888522899998739999899999999999998983023567899876568256034488898722013
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.|+++++ +..+++++.+|..|+||+|+||.++|++|++.|+++. ...++++||..|+.++.+.
T Consensus 330 ~~~~~~~----l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-------------~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 330 IHSRKMN----LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER-------------RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHTTSB----CCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------------CSBCCHHHHHHHHHHHHHH
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCC
T ss_conf 9855999----9965799999987799999999999999999999869-------------9875999999999998572
Q ss_pred C
Q ss_conf 4
Q 004550 491 F 491 (745)
Q Consensus 491 ~ 491 (745)
.
T Consensus 393 ~ 393 (405)
T 4b4t_J 393 N 393 (405)
T ss_dssp H
T ss_pred C
T ss_conf 6
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=398.57 Aligned_cols=324 Identities=26% Similarity=0.432 Sum_probs=270.8
Q ss_pred HHHHCCCCCCCCCEEEEEECCEEEEEEEEEEEECCCCC----CCCCCCCEECCCCEEEEEECCCCCEEEECCCCC---CC
Q ss_conf 98811882006958999975917999998865358554----465544134688589997268985144114667---66
Q 004550 134 RKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEK----SNALERGIITNETYFVFEASNDSGIKIVNQREG---AN 206 (745)
Q Consensus 134 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~ 206 (745)
...+.+-++..|+.+ ...+.. .+.|.. .. +.+. ....+...+.+.+.+.+.....+.+.+.+.... ..
T Consensus 96 ~~~~~~~p~~~g~~~--~~~~~~-~~iv~~-~~-~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~ 170 (437)
T 4b4t_I 96 LEEIRGNPLSIGTLE--EIIDDD-HAIVTS-PT-MPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSV 170 (437)
T ss_dssp HHHHHCSSEEEEEEE--EECTTS-EEEEEC-SS-SCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCC
T ss_pred HHHHCCCCCEEEEEE--EEECCC-EEEEEC-CC-CCEEEEECCCCCCHHHCCCCCEEEEECCCCCCEEECCCCCCCCCEE
T ss_conf 986268995468999--983498-799981-89-9889995355357867567868999546752200067766874525
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 55334677764226755509999999999987268993577460998885199993798939999999999945998489
Q 004550 207 SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI 286 (745)
Q Consensus 207 ~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~ 286 (745)
..+.+.|+++|+| |||+++++++| ++++..|+.+|++|..+|+++|+|+|||||||||||++|+++|+++ +.+++.
T Consensus 171 ~~~~~~p~v~~~D--IgGld~~k~~L-~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~ 246 (437)
T 4b4t_I 171 MKMDKSPTESYSD--IGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-SATFLR 246 (437)
T ss_dssp CEEESSCCCCGGG--TCSCHHHHHHH-HHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEE
T ss_pred EEECCCCCCCCEE--CCCHHHHHHHH-HHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHH-CCCEEE
T ss_conf 5433689986005--57699999999-9999998769999986799977788448899963999999999985-998799
Q ss_pred ECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCCCCC-CCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7141022101020499999999999820022499998179999262254302899888-884046799999974039657
Q 004550 287 VNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVES 365 (745)
Q Consensus 287 i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDEid~l~~~~~~~~~-~~~~~~~i~~~ll~~~d~~~~ 365 (745)
++++++.++|+|+++++++.+|..|.... ||||||||+|+++++|..... +.....+++.+||..||++..
T Consensus 247 v~~s~l~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 247 IVGSELIQKYLGDGPRLCRQIFKVAGENA--------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp EESGGGCCSSSSHHHHHHHHHHHHHHHTC--------SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred EEHHHHHHCCCCHHHHHHHHHHHHHHHCC--------CCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88799531447669999999999998659--------9189876122203667788877658999999999997247678
Q ss_pred CCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 89589999808998779542099995415995399977899999999705434678888522899998739999899999
Q 004550 366 LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 445 (745)
Q Consensus 366 ~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~ 445 (745)
..+++||+|||+++.||||++|||||++.|+|++||.++|.+||+.|+++++ +..+++++.+|..|+||+|+||.+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN----LSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC----BCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred CCCEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHH
T ss_conf 8997999957980555998864886027998089699999999999964899----997679999997679998999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCC
Q ss_conf 9999999989830235678998765682560344888987220134
Q 004550 446 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 491 (745)
Q Consensus 446 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 491 (745)
+|++|++.|+++. ...++++||..|+..+.|+.
T Consensus 395 l~~eA~~~Air~~-------------~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 395 MCTEAGLLALRER-------------RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHHHTT-------------CSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999999848-------------99669999999999870798
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=393.70 Aligned_cols=288 Identities=32% Similarity=0.556 Sum_probs=253.3
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCC-C--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 54413468858999726898514411466-7--66553346777642267555099999999999872689935774609
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQRE-G--ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg 251 (745)
.....+.+.+.+.+.......+.+++... + ....+.+.|+++|+| |||+++++++| ++++..|+.+|++|..+|
T Consensus 135 ~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~f~~~g 211 (437)
T 4b4t_L 135 VDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDG--IGGLTEQIREL-REVIELPLKNPEIFQRVG 211 (437)
T ss_dssp SCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGG--GCSCHHHHHHH-HHHHHHHHHCHHHHHHHC
T ss_pred CCHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHEEEECCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 678665988502475531668875475447423301331599989667--17859999999-999999874999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98885199993798939999999999945998489714102210102049999999999982002249999817999926
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDE 331 (745)
+++|+|+|||||||||||++|+++|+++ +.+++.+++++++++|+|++++.++.+|..|.... ||||||||
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~--------P~IifiDE 282 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFSPASGIVDKYIGESARIIREMFAYAKEHE--------PCIIFMDE 282 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC--------SEEEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEC
T ss_conf 8978769998999984999999999985-99989984146205520178999999999998638--------96464204
Q ss_pred CHHHHHCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 2254302899888-884046799999974039657895899998089987795420999954159953999778999999
Q 004550 332 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~-~~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|+++++|..... ......+++++||..|||+....+++||++||+|+.||||++|||||++.|+|++||.++|.+||+
T Consensus 283 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 43333333447887536899999999998346667798699993399033189782777102001359969999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC
Q ss_conf 99705434678888522899998739999899999999999998983023567899876568256034488898722013
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.|+++++ +..+++++.+|..|+||+|+||.++|++|++.|+++. ...++++||..|+..+.|.
T Consensus 363 ~~~~~~~----~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-------------~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 363 IHTAKVK----KTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-------------RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHTSC----BCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHHHT
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHC
T ss_conf 9865899----9864589999976899999999999999999999869-------------9877999999999998750
Q ss_pred C
Q ss_conf 4
Q 004550 491 F 491 (745)
Q Consensus 491 ~ 491 (745)
.
T Consensus 426 ~ 426 (437)
T 4b4t_L 426 K 426 (437)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=393.63 Aligned_cols=289 Identities=30% Similarity=0.459 Sum_probs=252.9
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 544134688589997268985144114667---66553346777642267555099999999999872689935774609
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQREG---ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg 251 (745)
.+...+.+.+.+.+.......+.+++.+.. ....+.+.|+++|+| |||+++++++| ++++..|+.+|++|..+|
T Consensus 135 ~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~d--igGl~~~k~~l-~e~v~~pl~~pe~f~~~g 211 (434)
T 4b4t_M 135 VDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSD--VGGLDKQIEEL-VEAIVLPMKRADKFKDMG 211 (434)
T ss_dssp SCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCSHHHHHHC
T ss_pred CCHHHCCCCCEEEECCCCHHHHEECCCCCCCHHHHCCCCCCCCCCHHH--CCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 678678989878675765345301686547313432668897998676--09579999999-999999974999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98885199993798939999999999945998489714102210102049999999999982002249999817999926
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDE 331 (745)
+++|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|++++.++.+|..|.... ||||||||
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~a--------P~IifiDE 282 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA--------PTIIFIDE 282 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHC--------SEEEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCC--------CEEEEECC
T ss_conf 9988726877949998899999999995-99889986446431345638999999999998619--------90896033
Q ss_pred CHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 22543028998888-84046799999974039657895899998089987795420999954159953999778999999
Q 004550 332 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~-~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|+++++|....++ .....+++.+||..||++....+++||++||+|+.||||++|||||++.|++++||.++|.+||+
T Consensus 283 iDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 283 LDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp THHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 25665225778888746999999999997136688899899994899223399671577403899808959999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC
Q ss_conf 99705434678888522899998739999899999999999998983023567899876568256034488898722013
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.|+++++ +..+++++.+|..|+||+|+||.++|++|++.|+++. ...++++||..|+.+++|+
T Consensus 363 ~~~~~~~----~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~-------------~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 363 IHSRKMT----TDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG-------------QSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHSC----BCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHSCSSS
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCC
T ss_conf 9856899----9876799999986899899999999999999999869-------------9876999999999997377
Q ss_pred CC
Q ss_conf 45
Q 004550 491 FG 492 (745)
Q Consensus 491 ~~ 492 (745)
..
T Consensus 426 ~~ 427 (434)
T 4b4t_M 426 KS 427 (434)
T ss_dssp CC
T ss_pred CC
T ss_conf 77
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=391.02 Aligned_cols=288 Identities=31% Similarity=0.485 Sum_probs=252.7
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 5441346885899972689851441146676---6553346777642267555099999999999872689935774609
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg 251 (745)
.+...+.+.+.+.+.....+.+.+++.+.-+ ...+.+.|+++|+| |||+++++++| ++++..|+.+|++|..+|
T Consensus 163 ~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~D--IgGl~~~k~~L-~e~V~~pl~~pe~f~~~G 239 (467)
T 4b4t_H 163 VSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSD--VGGCKDQIEKL-REVVELPLLSPERFATLG 239 (467)
T ss_dssp CCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSS--CTTCHHHHHHH-HHHTHHHHHCHHHHHHHT
T ss_pred CCHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEECCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHCCHHHHHHCC
T ss_conf 788778988788774675444661887658755020015799998788--54599999999-999998842999998779
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98885199993798939999999999945998489714102210102049999999999982002249999817999926
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDE 331 (745)
+++|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|+++++++.+|..|.... ||||||||
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDE 310 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------ACIIFFDE 310 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC--------SEEEEEEC
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCC-CCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEEECC
T ss_conf 9999814764899980999999998446-89869988699502667789999999999987617--------84675223
Q ss_pred CHHHHHCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 22543028998888-84046799999974039657895899998089987795420999954159953999778999999
Q 004550 332 IDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 410 (745)
Q Consensus 332 id~l~~~~~~~~~~-~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~ 410 (745)
+|+++.+|....++ .....+.+.++|..||++....+++||++||+++.||+|++|||||++.|+|++|+.++|.+||+
T Consensus 311 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp CTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 21101355676778627899999999998655578883798828789311795463666550799838969999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC
Q ss_conf 99705434678888522899998739999899999999999998983023567899876568256034488898722013
Q 004550 411 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 490 (745)
Q Consensus 411 ~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 490 (745)
.|+++++ +..+++++.+|..|+||+|+||.++|++|++.|+++. ...++++||..|+..+.+.
T Consensus 391 ~~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~-------------~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 391 IHSKSMS----VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------RKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHTTSC----BCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHHHHHH
T ss_pred HHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHCC
T ss_conf 9854899----9877799999977799999999999999999999838-------------8766999999999999647
Q ss_pred C
Q ss_conf 4
Q 004550 491 F 491 (745)
Q Consensus 491 ~ 491 (745)
.
T Consensus 454 ~ 454 (467)
T 4b4t_H 454 Y 454 (467)
T ss_dssp H
T ss_pred C
T ss_conf 4
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=383.23 Aligned_cols=288 Identities=29% Similarity=0.463 Sum_probs=251.1
Q ss_pred CCCCEECCCCEEEEEECCCCCEEEECCCC-C--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
Q ss_conf 54413468858999726898514411466-7--66553346777642267555099999999999872689935774609
Q 004550 175 LERGIITNETYFVFEASNDSGIKIVNQRE-G--ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 251 (745)
Q Consensus 175 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg 251 (745)
.+...+.+.+.+.+.......+.+++... + ....+.+.|+++|+| |||+++++++| ++++..|+.+|+.|..+|
T Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~~~~~g 202 (428)
T 4b4t_K 126 LDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYAD--VGGLDMQKQEI-REAVELPLVQADLYEQIG 202 (428)
T ss_dssp SCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGG--SCSCHHHHHHH-HHHHHHHHHCHHHHHHHC
T ss_pred CCHHHCCCCCEEEEECCHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCC
T ss_conf 058557887656652330367763685447513432677899998888--51699999999-999999873999998679
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98885199993798939999999999945998489714102210102049999999999982002249999817999926
Q 004550 252 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 331 (745)
Q Consensus 252 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDE 331 (745)
+++|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|+++.+++.+|..|+... ||||||||
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a--------P~IifiDE 273 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA--------PSIIFIDE 273 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC--------SEEEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEECHH
T ss_conf 9988658888989988899999999986-79969993304431454605999999999999739--------97463002
Q ss_pred CHHHHHCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEEC-CCCHHHHHHHH
Q ss_conf 2254302899888-884046799999974039657895899998089987795420999954159953-99977899999
Q 004550 332 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS-LPDENGRLQIL 409 (745)
Q Consensus 332 id~l~~~~~~~~~-~~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~-~Pd~~~r~~Il 409 (745)
+|+++.+|..... +.....+++++||..|||+....+++||++||+++.||||++|||||++.|++| +|+.++|.+||
T Consensus 274 iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il 353 (428)
T 4b4t_K 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIF 353 (428)
T ss_dssp THHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 24330355678788871899999999998438787799799996198155696663687515999819999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHH-H
Q ss_conf 999705434678888522899998739999899999999999998983023567899876568256034488898722-0
Q 004550 410 QIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI-V 488 (745)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~it~~df~~al~~~-~ 488 (745)
+.|+++++ +.++++++.+|..|+||+|+||.++|++|++.|+++. ...++++||..|+... +
T Consensus 354 ~~~~~~~~----l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-------------~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 354 GTIASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHSSC----BCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHSC
T ss_pred HHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHHHC
T ss_conf 99855799----9963589999977799889999999999999999879-------------987799999999997617
Q ss_pred CCC
Q ss_conf 134
Q 004550 489 PAF 491 (745)
Q Consensus 489 ps~ 491 (745)
+..
T Consensus 417 ~~~ 419 (428)
T 4b4t_K 417 TDN 419 (428)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 668
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=381.84 Aligned_cols=266 Identities=35% Similarity=0.602 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 46777642267555099999999999872689935774609988851999937989399999999999459984897141
Q 004550 211 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 290 (745)
Q Consensus 211 ~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~~~~~~lg~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~ 290 (745)
..|+++|++ |||+++.+++| ++++..|+.+|+.|.++|+.+++|+|||||||||||++|+++|.++ +.+++.++++
T Consensus 470 ~~p~v~w~d--iggl~~~k~~l-~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~ 545 (806)
T 3cf2_A 470 EVPQVTWED--IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 545 (806)
T ss_dssp BCCCCCSTT--CCSCHHHHHHH-TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHH
T ss_pred CCCCCCHHH--HCCHHHHHHHH-HHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEECCC
T ss_conf 578878888--17889999999-9999756668999971488888607986687789639999999983-8966874241
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 0221010204999999999998200224999981799992622543028998-888840467999999740396578958
Q 004550 291 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNV 369 (745)
Q Consensus 291 ~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p~II~iDEid~l~~~~~~~-~~~~~~~~~i~~~ll~~~d~~~~~~~v 369 (745)
+++++|+|+++++++++|+.|+... ||||||||+|+++++|+.. .++.+..++++++||.+|||+....+|
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~--------P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAA--------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTC--------SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCC--------CCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 1210334368999999999999729--------96352042567763158888898669999999999997487877998
Q ss_pred EEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99998089987795420999954159953999778999999997054346788885228999987399998999999999
Q 004550 370 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 449 (745)
Q Consensus 370 ~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~ 449 (745)
+|||+||+|+.||+|++|||||++.|++++||.++|.+||+.++++++ +..+++++.||..|+||+|+||+++|++
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~----~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------CCC----------------CHHHHHHH
T ss_pred EEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999937980438984717785507999799699999999999856799----9877899999976899999999999999
Q ss_pred HHHHHHHHHCCCCCCCC------------CCCCCCCEEEHHHHHHHHHHHHCCCC
Q ss_conf 99998983023567899------------87656825603448889872201345
Q 004550 450 AVSFALNRQLSMDDLTK------------PVDEESIKVTMDDFLHALYEIVPAFG 492 (745)
Q Consensus 450 A~~~a~~r~~~~~~~~~------------~~~~~~~~it~~df~~al~~~~ps~~ 492 (745)
|++.|+++.+....... ........++++||..|+..++|+..
T Consensus 694 A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999999999856444333015741001233456686479999999986799999
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=1.00 E-value=1 Score=376.46 Aligned_cols=444 Identities=30% Similarity=0.442 Sum_probs=349.6
Q ss_pred EEEEEEECCCCCCCCCCEEEECHHHHCCCCCC-CCCCEEEEEECC---EEEEEEEEECCCCCCCCEEECHHHHHCCCCCC
Q ss_conf 23899304994446542799595212134789-997258999399---08999984089989993753697772258568
Q 004550 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVP-NSNLFLASVAGD---SFVLSLITSHPSVNKGQIALNSVQRRHAKVST 88 (745)
Q Consensus 13 ~~l~V~~~p~~~~~~tn~v~v~~~d~~~l~~~-G~~~~~v~i~~~---~~v~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 88 (745)
.+|+|..+...+ .+.||+||+.|.+|++. | .+|.|.|+ ..|+ .+++.++++++.|.|++..|+|+|+.+
T Consensus 24 ~~~~v~~~~~~d---~~~~~~~~~~~~~l~~~~g---d~v~~~g~~~~~~~~-~~~~~~~~~~~~i~~~~~~r~n~~~~~ 96 (489)
T 3hu3_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLFRG---DTVLLKGKKRREAVC-IVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (489)
T ss_dssp TEEEEECCTTCC---TTEEEECHHHHHHHTCCTT---CEEEEECSTTCEEEE-EEEECTTSCTTEEECCHHHHHHTTCCT
T ss_pred CEEEECCCCCCC---CCEEEECHHHHHHCCCCCC---CEEEEECCCCCCEEE-EEEECCCCCCCEEEECHHHHHHCCCCC
T ss_conf 725975677776---8789989999997699999---989992686673799-995078789997995689996539889
Q ss_pred CCEEEEEEE-CCCCCCEEEEEEEE-EEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEEEEEECCEEEEEEEEEE
Q ss_conf 994999994-99986313658987-5444058865433688899999988118--8200695899997591799999886
Q 004550 89 GDHVSLNRF-IPPEDFNLALLTVE-LEFVKKGSKNEQVDAVLLANQLRKRFIN--QVMTAGQRVVFEYHGNNYIFTVNGA 164 (745)
Q Consensus 89 ~~~v~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~v~~~ 164 (745)
||.|+|+++ ..+ +...+++. ++..... +....+.-+.|..... .++..|+.+.+......+.+.+...
T Consensus 97 gd~v~v~~~~~~~---~a~~v~~~~~~~av~a-----~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (489)
T 3hu3_A 97 GDVISIQPCPDVK---YGKRIHVLPIDDTVEG-----ITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVET 168 (489)
T ss_dssp TCEEEEEECTTCC---BCSEEEEEEBGGGSSS-----CCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCCCC---CCCEEEECCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEE
T ss_conf 9989999888887---4678998379865232-----4530578886787740584203688899657884687999841
Q ss_pred EECCCCCCCCCCCCEECCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 53585544655441346885899972689851441146676655334677764226755509999999999987268993
Q 004550 165 AVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPP 244 (745)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~l~~~~~~~~~~~~ 244 (745)
++ .....+.++|.+.+....... .. ... ..+.+.|++ |+|++.+++++ ++++..++.+|
T Consensus 169 ~~--------~~~~~~~~~t~~~~~~~~~~~---~~-----~~~--~~~~~~~~~--i~G~~~~~~~l-~~~i~~~l~~~ 227 (489)
T 3hu3_A 169 DP--------SPYCIVAPDTVIHCEGEPIKR---ED-----EEE--SLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHP 227 (489)
T ss_dssp ES--------SSEEEECTTCEEECCSSCBCH---HH-----HHH--HHTCCCGGG--CCSCHHHHHHH-HHHTHHHHHCH
T ss_pred CC--------CCCEEECCCEEEEECCCCCCC---CC-----CCC--CCCCCCHHH--CCCHHHHHHHH-HHHHHHHHHCH
T ss_conf 37--------886697688189973676554---44-----333--457899888--08979999999-99999885598
Q ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 57746099888519999379893999999999994599848971410221010204999999999998200224999981
Q 004550 245 HVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDL 324 (745)
Q Consensus 245 ~~~~~lg~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~i~~~~~~~~~~g~~e~~i~~~f~~a~~~~~~~~~~~~p 324 (745)
+++..+|..+++++|||||||||||++|+++++.+ +.+++.++|+++.+.+.|+.+..++.+|..+.... |
T Consensus 228 ~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~--------p 298 (489)
T 3hu3_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------P 298 (489)
T ss_dssp HHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC--------S
T ss_pred HHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCHHHHHHHHHHHHHHHCC--------C
T ss_conf 99986499999758999969989999999999986-99889997457654421326789999999999639--------9
Q ss_pred EEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEECCCCHHH
Q ss_conf 79999262254302899888884046799999974039657895899998089987795420999954159953999778
Q 004550 325 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENG 404 (745)
Q Consensus 325 ~II~iDEid~l~~~~~~~~~~~~~~~~i~~~ll~~~d~~~~~~~v~vI~~tn~~~~id~al~r~gRf~~~i~i~~Pd~~~ 404 (745)
++|||||+|.+.++++... .+...+++.+|+..+++.....++++|++||+++.+|++++|+|||+..+++++|+.++
T Consensus 299 ~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp EEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred CEEEECCHHHHCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHH
T ss_conf 0899646555234554454--25789999999987531246786699985488322698782777674699827979999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCEEEHHHH
Q ss_conf 9999999970543467888852289999873999989999999999999898302356789987----656825603448
Q 004550 405 RLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDF 480 (745)
Q Consensus 405 r~~Il~~~~~~~~~~~~l~~~~~l~~la~~t~g~~gadl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~it~~df 480 (745)
|.+||+.+++.+. +..+.++..++..+.||++++|..+|++|...++++.....+..... ......++++||
T Consensus 377 R~~IL~~~~~~~~----l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf 452 (489)
T 3hu3_A 377 RLEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDF 452 (489)
T ss_dssp HHHHHHHHTTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHH
T ss_pred HHHHHHHHHHCCC----CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHH
T ss_conf 9999999984189----862133999999756976999999999999999973023355320125523304676789999
Q ss_pred HHHHHHHHCCCC----CCCCCCCCCCCCCEE
Q ss_conf 889872201345----556512113356302
Q 004550 481 LHALYEIVPAFG----ASTDDLERSRLNGMV 507 (745)
Q Consensus 481 ~~al~~~~ps~~----~~~~~~~~~~~~g~~ 507 (745)
..|+.+++|+.. ...+.+.|.+.+|..
T Consensus 453 ~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 453 RWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp HHHHTSHHHHHHHGGGC--------------
T ss_pred HHHHHHCCCHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 9999767742410134317998897718976
Done!