Query 004552
Match_columns 745
No_of_seqs 162 out of 280
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0412 Golgi transport comple 100.0 4E-148 8E-153 1206.2 72.5 715 22-737 13-773 (773)
2 PF08318 COG4: COG4 transport 100.0 8.2E-69 1.8E-73 577.6 35.0 304 182-487 1-331 (331)
3 smart00762 Cog4 COG4 transport 100.0 6.2E-67 1.3E-71 559.8 35.2 303 182-487 1-324 (324)
4 PF07393 Sec10: Exocyst comple 100.0 5E-33 1.1E-37 329.8 59.5 610 87-741 1-708 (710)
5 KOG2180 Late Golgi protein sor 99.9 3.9E-21 8.4E-26 211.8 54.4 625 37-732 30-719 (793)
6 KOG3745 Exocyst subunit - Sec1 99.9 1.6E-18 3.6E-23 194.2 51.9 599 49-737 65-751 (763)
7 COG5173 SEC6 Exocyst complex s 99.8 2.1E-13 4.5E-18 146.8 50.6 575 89-738 58-705 (742)
8 PF06046 Sec6: Exocyst complex 99.8 1.3E-16 2.7E-21 186.1 28.0 402 263-743 110-540 (566)
9 PF04100 Vps53_N: Vps53-like, 99.7 6.1E-15 1.3E-19 161.6 35.0 343 34-427 12-380 (383)
10 PF10191 COG7: Golgi complex c 99.6 5.7E-09 1.2E-13 124.6 65.3 621 45-733 36-766 (766)
11 KOG2286 Exocyst complex subuni 99.4 3.1E-07 6.7E-12 105.3 53.4 297 397-743 326-643 (667)
12 PF04437 RINT1_TIP1: RINT-1 / 98.8 1.2E-06 2.5E-11 100.6 25.6 178 554-733 300-494 (494)
13 PF10475 DUF2450: Protein of u 98.6 3.7E-05 8E-10 82.1 29.2 242 40-281 28-285 (291)
14 PF04091 Sec15: Exocyst comple 98.5 8.4E-06 1.8E-10 87.5 20.4 270 430-729 24-307 (311)
15 PF06248 Zw10: Centromere/kine 98.2 0.022 4.8E-07 67.1 42.3 199 40-238 7-239 (593)
16 KOG4182 Uncharacterized conser 98.0 0.048 1E-06 59.5 39.5 410 44-488 35-503 (828)
17 KOG2218 ER to golgi transport 97.9 0.096 2.1E-06 60.7 47.3 172 559-735 553-737 (737)
18 KOG2163 Centromere/kinetochore 97.3 0.046 9.9E-07 61.6 22.8 272 435-744 435-719 (719)
19 PF15469 Sec5: Exocyst complex 95.4 0.61 1.3E-05 46.1 15.6 126 94-221 42-170 (182)
20 KOG2307 Low density lipoprotei 94.2 13 0.00028 42.3 53.9 190 26-229 32-243 (705)
21 PF04124 Dor1: Dor1-like famil 92.9 17 0.00036 39.8 27.4 131 41-171 8-139 (338)
22 KOG2115 Vacuolar sorting prote 92.8 7.9 0.00017 46.3 19.2 152 51-202 247-403 (951)
23 PF04048 Sec8_exocyst: Sec8 ex 92.7 4.2 9E-05 38.5 14.4 106 40-146 34-140 (142)
24 KOG2176 Exocyst complex, subun 92.5 28 0.00061 41.4 52.7 160 567-734 595-763 (800)
25 KOG2346 Uncharacterized conser 91.1 5.9 0.00013 44.2 14.8 195 24-229 30-236 (636)
26 cd07624 BAR_SNX7_30 The Bin/Am 90.7 14 0.00031 37.0 16.6 116 43-166 17-137 (200)
27 PF14923 CCDC142: Coiled-coil 89.7 26 0.00057 39.4 18.7 91 608-699 277-379 (450)
28 PF10392 COG5: Golgi transport 89.2 8.7 0.00019 35.9 12.7 88 39-133 25-120 (132)
29 PF05664 DUF810: Protein of un 88.1 67 0.0014 38.5 27.6 87 398-486 513-606 (677)
30 PF10474 DUF2451: Protein of u 83.0 61 0.0013 33.5 19.3 127 579-710 68-200 (234)
31 PF09325 Vps5: Vps5 C terminal 82.7 53 0.0012 33.5 16.0 124 43-172 27-155 (236)
32 PF08700 Vps51: Vps51/Vps67; 81.7 18 0.00039 30.7 10.1 74 26-102 5-82 (87)
33 PF12325 TMF_TATA_bd: TATA ele 81.2 29 0.00062 31.9 11.5 42 41-82 17-58 (120)
34 cd07627 BAR_Vps5p The Bin/Amph 81.0 67 0.0015 32.6 17.4 117 44-166 8-129 (216)
35 cd07628 BAR_Atg24p The Bin/Amp 79.3 69 0.0015 31.7 15.8 111 44-161 8-123 (185)
36 KOG1011 Neurotransmitter relea 76.8 1.4E+02 0.0029 34.9 17.1 129 435-587 781-914 (1283)
37 PF01843 DIL: DIL domain; Int 76.2 13 0.00027 33.1 7.6 81 648-731 16-98 (105)
38 PRK11637 AmiB activator; Provi 73.9 1.2E+02 0.0026 34.3 16.6 58 43-103 43-100 (428)
39 KOG0972 Huntingtin interacting 71.6 26 0.00057 36.5 9.3 51 43-103 255-305 (384)
40 PF12128 DUF3584: Protein of u 68.3 3.6E+02 0.0078 35.0 22.7 22 298-319 1001-1022(1201)
41 cd07622 BAR_SNX4 The Bin/Amphi 68.0 1.4E+02 0.003 30.0 17.3 114 45-167 19-137 (201)
42 PF12325 TMF_TATA_bd: TATA ele 67.1 1E+02 0.0022 28.3 12.3 85 39-133 29-113 (120)
43 KOG3691 Exocyst complex subuni 65.0 3.3E+02 0.0071 33.3 61.4 136 33-168 33-172 (982)
44 PF07889 DUF1664: Protein of u 62.1 71 0.0015 29.6 9.3 35 86-120 76-110 (126)
45 PF06148 COG2: COG (conserved 60.9 6.3 0.00014 36.8 2.4 42 27-71 13-54 (133)
46 PF07889 DUF1664: Protein of u 60.4 1.4E+02 0.0031 27.6 12.0 45 54-101 68-112 (126)
47 PF12718 Tropomyosin_1: Tropom 57.8 1.7E+02 0.0037 27.7 12.8 86 41-133 15-104 (143)
48 PF00888 Cullin: Cullin family 56.8 1.9E+02 0.0042 33.8 14.6 83 194-292 225-307 (588)
49 PF10498 IFT57: Intra-flagella 55.3 1.6E+02 0.0034 32.5 12.3 97 43-149 248-358 (359)
50 PF04136 Sec34: Sec34-like fam 55.0 1.9E+02 0.0041 27.8 11.5 18 151-168 114-131 (157)
51 KOG2148 Exocyst protein Sec3 [ 54.5 4.3E+02 0.0093 31.3 16.1 21 41-61 187-207 (867)
52 PF06008 Laminin_I: Laminin Do 54.0 2.8E+02 0.0061 29.0 17.5 73 36-111 6-78 (264)
53 PLN02956 PSII-Q subunit 53.6 91 0.002 30.7 8.9 86 116-212 80-170 (185)
54 PF04912 Dynamitin: Dynamitin 53.4 2.9E+02 0.0063 30.7 14.5 22 37-58 206-227 (388)
55 TIGR03042 PS_II_psbQ_bact phot 53.3 1.2E+02 0.0025 28.8 9.3 90 112-212 32-126 (142)
56 PF04156 IncA: IncA protein; 51.9 2.4E+02 0.0053 27.7 13.4 31 41-71 82-112 (191)
57 cd07664 BAR_SNX2 The Bin/Amphi 51.0 3E+02 0.0065 28.4 17.6 116 44-165 26-146 (234)
58 PF04124 Dor1: Dor1-like famil 49.2 3.3E+02 0.0072 29.6 13.8 123 41-167 15-138 (338)
59 KOG0288 WD40 repeat protein Ti 49.1 2E+02 0.0043 31.9 11.4 93 32-127 5-97 (459)
60 PF03670 UPF0184: Uncharacteri 49.1 1.2E+02 0.0026 25.9 7.8 50 25-77 21-70 (83)
61 PF01397 Terpene_synth: Terpen 49.1 1.3E+02 0.0027 29.9 9.4 140 517-657 22-171 (183)
62 PRK02224 chromosome segregatio 48.6 4.5E+02 0.0097 32.7 16.6 16 49-64 511-526 (880)
63 PF06103 DUF948: Bacterial pro 48.5 1.1E+02 0.0024 26.1 8.1 29 105-133 57-85 (90)
64 TIGR03185 DNA_S_dndD DNA sulfu 47.8 3.4E+02 0.0073 32.5 14.7 25 180-204 498-522 (650)
65 KOG2285 E3 ubiquitin ligase, C 47.7 4.5E+02 0.0099 29.6 15.1 91 182-279 262-352 (777)
66 PF10168 Nup88: Nuclear pore c 47.5 1.8E+02 0.0039 35.3 12.2 44 73-116 574-617 (717)
67 PRK10884 SH3 domain-containing 46.9 2.1E+02 0.0046 28.9 10.8 31 39-69 85-115 (206)
68 PF11932 DUF3450: Protein of u 46.2 3.6E+02 0.0078 27.9 14.0 85 39-126 20-104 (251)
69 cd07673 F-BAR_FCHO2 The F-BAR 45.8 3.8E+02 0.0083 28.2 20.1 16 151-166 136-151 (269)
70 PF06103 DUF948: Bacterial pro 45.6 1.8E+02 0.004 24.8 9.0 27 42-68 28-54 (90)
71 PF03962 Mnd1: Mnd1 family; I 45.6 3.2E+02 0.0069 27.2 11.9 114 41-171 70-186 (188)
72 smart00787 Spc7 Spc7 kinetocho 45.5 3.9E+02 0.0083 28.9 13.2 14 89-102 183-196 (312)
73 PF05757 PsbQ: Oxygen evolving 45.4 41 0.00089 33.8 5.4 82 120-212 100-186 (202)
74 cd07666 BAR_SNX7 The Bin/Amphi 44.9 3.8E+02 0.0082 27.8 15.0 112 44-163 58-174 (243)
75 PRK03918 chromosome segregatio 43.5 5.8E+02 0.013 31.6 16.5 17 184-200 740-756 (880)
76 KOG4460 Nuclear pore complex, 42.6 2.5E+02 0.0055 32.3 11.3 66 51-116 574-640 (741)
77 KOG0994 Extracellular matrix g 41.9 2.1E+02 0.0045 35.9 11.1 89 40-131 1591-1679(1758)
78 PF06008 Laminin_I: Laminin Do 40.4 4.5E+02 0.0098 27.4 16.8 75 41-118 25-99 (264)
79 cd07621 BAR_SNX5_6 The Bin/Amp 40.1 4.2E+02 0.0092 27.0 15.8 113 49-168 33-150 (219)
80 PRK09343 prefoldin subunit bet 39.5 3E+02 0.0065 25.2 11.1 46 44-89 4-49 (121)
81 PF00261 Tropomyosin: Tropomyo 39.2 4.5E+02 0.0097 27.0 16.2 56 86-141 128-184 (237)
82 PF04912 Dynamitin: Dynamitin 38.8 3.6E+02 0.0077 30.0 12.3 24 110-133 316-339 (388)
83 PF07743 HSCB_C: HSCB C-termin 38.5 1E+02 0.0022 25.6 6.1 26 140-165 42-67 (78)
84 cd00179 SynN Syntaxin N-termin 38.2 3.4E+02 0.0073 25.3 12.8 28 94-121 43-70 (151)
85 PF10475 DUF2450: Protein of u 37.4 5.3E+02 0.011 27.4 17.5 49 187-237 214-262 (291)
86 PF11559 ADIP: Afadin- and alp 37.3 3.6E+02 0.0079 25.4 11.6 8 3-10 13-20 (151)
87 cd07596 BAR_SNX The Bin/Amphip 37.3 4.2E+02 0.009 26.1 16.0 119 43-166 7-131 (218)
88 PRK02224 chromosome segregatio 36.8 7.8E+02 0.017 30.5 16.1 87 42-131 594-685 (880)
89 PRK09039 hypothetical protein; 36.4 6.1E+02 0.013 27.8 13.9 105 42-149 48-160 (343)
90 PRK09039 hypothetical protein; 36.0 4.2E+02 0.0091 29.0 12.0 26 108-133 139-164 (343)
91 PF04111 APG6: Autophagy prote 36.0 5.5E+02 0.012 27.7 12.7 42 41-82 44-85 (314)
92 smart00503 SynN Syntaxin N-ter 35.2 3.2E+02 0.0069 24.2 11.5 29 94-122 45-73 (117)
93 PF04513 Baculo_PEP_C: Baculov 34.0 4.1E+02 0.0089 25.1 10.5 63 43-105 34-105 (140)
94 PF10234 Cluap1: Clusterin-ass 33.7 4.6E+02 0.0099 27.7 11.1 80 42-127 178-257 (267)
95 PF04582 Reo_sigmaC: Reovirus 32.8 45 0.00097 35.9 3.6 37 41-77 29-65 (326)
96 PF09726 Macoilin: Transmembra 32.7 9.5E+02 0.021 29.1 15.0 27 45-71 458-484 (697)
97 TIGR02169 SMC_prok_A chromosom 32.5 1.2E+03 0.025 29.9 18.2 13 51-63 837-849 (1164)
98 PF05478 Prominin: Prominin; 32.4 1E+03 0.023 29.3 17.4 192 42-237 200-420 (806)
99 PF08336 P4Ha_N: Prolyl 4-Hydr 32.2 4.1E+02 0.0089 24.6 13.2 17 150-166 101-117 (134)
100 PF14689 SPOB_a: Sensor_kinase 32.0 1.4E+02 0.003 23.8 5.6 31 136-166 21-51 (62)
101 PHA02562 46 endonuclease subun 31.7 8.7E+02 0.019 28.2 15.8 36 86-121 338-373 (562)
102 cd07667 BAR_SNX30 The Bin/Amph 31.4 6.1E+02 0.013 26.3 16.7 137 44-202 55-198 (240)
103 cd07623 BAR_SNX1_2 The Bin/Amp 31.3 5.8E+02 0.013 26.0 18.1 118 43-166 15-137 (224)
104 PF09403 FadA: Adhesion protei 31.3 4.3E+02 0.0094 24.5 13.6 110 23-138 13-125 (126)
105 COG2178 Predicted RNA-binding 30.8 5.6E+02 0.012 25.7 16.0 100 118-219 45-150 (204)
106 COG5185 HEC1 Protein involved 30.7 8.5E+02 0.018 27.7 15.7 93 50-152 267-363 (622)
107 PF00261 Tropomyosin: Tropomyo 30.3 6.2E+02 0.013 26.0 12.5 58 42-102 3-60 (237)
108 COG1579 Zn-ribbon protein, pos 30.2 6.4E+02 0.014 26.1 13.8 108 42-150 40-148 (239)
109 PF15003 HAUS2: HAUS augmin-li 30.1 6.3E+02 0.014 26.6 11.2 24 34-57 48-71 (277)
110 PHA02562 46 endonuclease subun 30.0 7.5E+02 0.016 28.7 13.8 108 42-149 257-374 (562)
111 KOG1333 Uncharacterized conser 29.2 3.8E+02 0.0082 26.9 8.9 95 107-213 17-112 (241)
112 PRK01156 chromosome segregatio 28.8 1.2E+03 0.026 28.9 16.5 11 155-165 732-742 (895)
113 PRK10132 hypothetical protein; 28.7 4.4E+02 0.0094 23.7 9.6 31 41-71 6-36 (108)
114 PRK11637 AmiB activator; Provi 28.4 6.6E+02 0.014 28.3 12.4 33 45-77 52-84 (428)
115 KOG2069 Golgi transport comple 27.8 1E+03 0.022 27.8 25.4 190 28-232 17-222 (581)
116 KOG0250 DNA repair protein RAD 27.8 8E+02 0.017 30.9 13.2 96 51-146 665-768 (1074)
117 PRK01156 chromosome segregatio 27.4 1.2E+03 0.026 29.1 15.5 28 123-150 719-746 (895)
118 PRK03918 chromosome segregatio 27.0 1.1E+03 0.025 29.0 15.3 26 36-61 151-176 (880)
119 PHA03332 membrane glycoprotein 27.0 1.1E+03 0.024 29.7 13.8 15 157-171 981-995 (1328)
120 TIGR00634 recN DNA repair prot 27.0 1.1E+03 0.023 27.7 14.6 16 134-149 223-238 (563)
121 KOG2171 Karyopherin (importin) 26.8 9.4E+02 0.02 30.4 13.6 179 460-645 659-855 (1075)
122 KOG2196 Nuclear porin [Nuclear 26.7 4.3E+02 0.0093 27.3 9.1 42 41-82 114-155 (254)
123 PF10805 DUF2730: Protein of u 26.5 4.3E+02 0.0092 23.6 8.3 30 91-120 64-93 (106)
124 TIGR00208 fliS flagellar biosy 26.4 2.1E+02 0.0046 26.3 6.5 72 144-219 37-113 (124)
125 COG1196 Smc Chromosome segrega 25.9 9.6E+02 0.021 31.0 14.5 128 19-149 646-774 (1163)
126 PF15003 HAUS2: HAUS augmin-li 25.6 8.2E+02 0.018 25.9 13.1 22 50-71 57-78 (277)
127 PF02561 FliS: Flagellar prote 25.1 2.9E+02 0.0063 25.1 7.3 71 144-218 35-110 (122)
128 TIGR02168 SMC_prok_B chromosom 25.0 1.5E+03 0.032 28.8 16.3 6 442-447 1131-1136(1179)
129 cd07662 BAR_SNX6 The Bin/Amphi 24.9 7.5E+02 0.016 25.2 16.1 17 152-168 133-149 (218)
130 PF10602 RPN7: 26S proteasome 24.8 6.6E+02 0.014 24.5 14.6 60 140-202 75-134 (177)
131 COG4942 Membrane-bound metallo 24.7 6.4E+02 0.014 28.3 10.8 100 29-131 156-256 (420)
132 KOG2297 Predicted translation 24.4 9E+02 0.019 26.1 11.2 98 211-308 214-352 (412)
133 PRK05685 fliS flagellar protei 24.3 2.9E+02 0.0062 25.7 7.1 75 141-219 38-117 (132)
134 PF10540 Membr_traf_MHD: Munc1 24.0 6E+02 0.013 23.7 9.7 44 608-651 3-46 (137)
135 TIGR00714 hscB Fe-S protein as 23.7 90 0.002 30.0 3.7 28 138-165 113-140 (157)
136 PF10046 BLOC1_2: Biogenesis o 23.3 5.1E+02 0.011 22.7 8.5 46 88-133 38-83 (99)
137 PRK03947 prefoldin subunit alp 23.0 4.1E+02 0.009 24.7 8.0 34 42-75 8-41 (140)
138 TIGR02894 DNA_bind_RsfA transc 23.0 6.6E+02 0.014 24.3 9.1 63 40-105 80-152 (161)
139 PRK10698 phage shock protein P 22.8 8.2E+02 0.018 24.9 14.9 108 34-146 17-133 (222)
140 COG5481 Uncharacterized conser 22.7 3.9E+02 0.0085 21.2 7.2 32 41-72 5-36 (67)
141 cd07630 BAR_SNX_like The Bin/A 22.6 7.8E+02 0.017 24.6 15.4 117 44-165 8-130 (198)
142 TIGR02338 gimC_beta prefoldin, 22.3 3.2E+02 0.007 24.4 6.8 72 85-163 3-74 (110)
143 KOG3958 Putative dynamitin [Cy 22.3 9.4E+02 0.02 25.6 10.7 46 26-71 177-225 (371)
144 KOG0977 Nuclear envelope prote 22.1 1.3E+03 0.028 27.0 13.0 38 40-77 92-129 (546)
145 PF00015 MCPsignal: Methyl-acc 22.1 7.5E+02 0.016 24.1 13.2 6 59-64 61-66 (213)
146 cd07663 BAR_SNX5 The Bin/Amphi 21.6 8.7E+02 0.019 24.8 15.5 53 112-165 89-146 (218)
147 TIGR01808 CM_M_hiGC-arch monof 21.2 2.1E+02 0.0046 23.7 4.9 34 49-82 2-35 (74)
148 TIGR02338 gimC_beta prefoldin, 21.2 5.9E+02 0.013 22.7 10.9 26 108-133 69-94 (110)
149 PF12718 Tropomyosin_1: Tropom 20.8 7.2E+02 0.016 23.5 12.8 87 41-127 36-129 (143)
150 PRK01773 hscB co-chaperone Hsc 20.7 1.1E+02 0.0024 30.0 3.7 28 139-166 128-155 (173)
151 COG5074 t-SNARE complex subuni 20.6 9.4E+02 0.02 24.8 17.8 63 223-287 154-217 (280)
152 PF00515 TPR_1: Tetratricopept 20.1 73 0.0016 21.2 1.7 22 149-170 12-33 (34)
153 PF14278 TetR_C_8: Transcripti 20.1 4.4E+02 0.0096 20.8 8.8 42 270-311 3-44 (77)
154 PF01540 Lipoprotein_7: Adhesi 20.1 1E+03 0.022 24.9 10.3 37 590-627 311-347 (353)
No 1
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-148 Score=1206.17 Aligned_cols=715 Identities=43% Similarity=0.677 Sum_probs=657.8
Q ss_pred ccccccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhhhhHHhHHHhHHHHHHh
Q 004552 22 SSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLD-KHLLQLQKSAEVLDIVKADSDHMLSN 100 (745)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~-~~l~~L~~~~~~l~~~~~~~~~l~~~ 100 (745)
.....++++....++.++|++++|++.++.+..+++.++++|+.+++++++++ .++..|++.+++|..+.++++++.++
T Consensus 13 ~~~~~~~~e~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~ 92 (773)
T KOG0412|consen 13 GVGHGSKPEKVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDA 92 (773)
T ss_pred ccccCcccHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999888 78899999999999999999999999
Q ss_pred HhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC--------
Q 004552 101 VRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK-------- 172 (745)
Q Consensus 101 i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~-------- 172 (745)
|.+||.+|+.||+|||+||.+|.||.+|+++|++|+|||+|++|++.||+++|||+||+||||++++++.+.
T Consensus 93 i~nt~~lAe~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~ 172 (773)
T KOG0412|consen 93 IKNTCVLAETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQV 172 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 004552 173 DSG---SDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLV 249 (745)
Q Consensus 173 ~~~---~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~ 249 (745)
.|+ ++|..+|.+|+++|.++|.++|.+|++.+|.++|+||||+||+||++++||+.||.|+|++|+.+||+++..+.
T Consensus 173 ~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~~ 252 (773)
T KOG0412|consen 173 VPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANVK 252 (773)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 35999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HhhhhhccCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004552 250 ELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEI 329 (745)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~R~l~~~~~~i 329 (745)
+.+.+ ++...++|+++||.|||+||+||+.|+|+|++|||+++|+++|++||.|||.|+.+|++.|.+.|++..+..+|
T Consensus 253 ~~~~~-~~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~~li~~i~~LQ~ecD~q~s~il~~f~~~Rri~~~~~~I 331 (773)
T KOG0412|consen 253 AGMED-DNRRQVFFADTLTMLFEGVARIIEANQPILETYYGLKKLIDVIEKLQAECDLQGSLILDEFMDRRRISHLNSDI 331 (773)
T ss_pred hcccc-CchhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655 33567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccc-----cCCCCC-CCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCC-------CC----CCCchh--hh
Q 004552 330 NTQNKNLL-----NVGVSE-GPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSS-------VD----PALVPR--AT 390 (745)
Q Consensus 330 ~~~~~~~~-----~~~~~~-~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~-------~~----~~~l~~--~~ 390 (745)
++|..... +.+.-+ .+||+|+|.++.|++.|.++|++|+||+.+||+.... .+ ++..++ ..
T Consensus 332 n~~~~~~~~~~~~~~~~ie~~p~p~Eid~ii~Ei~~mn~~~emY~rF~~~ki~~~~~v~~~s~~~~~~~d~e~~~~~~~~ 411 (773)
T KOG0412|consen 332 NESIHRQKNNINKNAEAIEDAPDPREIDAIITEITMMNQRSEMYSRFMSRKIGSNEVVESPSQDGDTSEDPEVRQELKCM 411 (773)
T ss_pred hHHHHHhhcccccchhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCHHHHHHHHHH
Confidence 99886521 222122 2599999999999999999999999999999986521 11 122222 11
Q ss_pred -hhcccCchHHHHHHHhhhHHhHHHHHHHHHHHHHHhhccCC-CCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 004552 391 -KAFRSGSFSKVVQEITGFYVILEGFFMVENVRKAIRIDEYV-PDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLS 468 (745)
Q Consensus 391 -~~~~~~~l~~~~qel~~~Yi~Le~~~l~~Sv~KAi~~de~~-~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln 468 (745)
....++.+.++||+++++|+.||+|||++||.||+.+|+.+ .|+++||||||||||+|||++||++|||++++|+++|
T Consensus 412 ~~f~n~s~~~~~mQel~~~y~~LE~yfm~esv~kAi~ld~ye~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN 491 (773)
T KOG0412|consen 412 KKFLNNSRVLTKMQELIRNYLLLEEYFMLESVQKAIKLDEYEDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFIN 491 (773)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 12345668899999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccC-------C-ccchhhhcCCCc----cccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 004552 469 SASSLLSNEYQEALQQKTRE-------P-NLGAKLFLGGVG----VQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAE 536 (745)
Q Consensus 469 ~~~~~L~~~~~~~l~~~l~~-------~-~~~~~~~~~~~~----~~~~~~~~~~~LNn~~~s~~y~~~L~~~l~~~~~~ 536 (745)
++..+|++||..+|+.+++. + +.....+++|.. +...+..|+++|||+++|++|+.+|++.++..+..
T Consensus 492 ~~~~~l~ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~ 571 (773)
T KOG0412|consen 492 EATALLDNDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESDCTE 571 (773)
T ss_pred HHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983 1 111112333221 22256789999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHhhhhCchhhhhhhcccccccChHhhhhhccCChHHHHHHHH
Q 004552 537 VFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQL-VATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHA 615 (745)
Q Consensus 537 ~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L-~~~i~~rl~~~l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~ 615 (745)
.||++.|++++++|+++++.++.+|++++++|+++| .++++|||+||+++|..++|+++++||+.|+.+||||++|+..
T Consensus 572 vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~ 651 (773)
T KOG0412|consen 572 VFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSS 651 (773)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccccHHHHhhhccCChHHHHHHHH
Confidence 999999999999999999999999999999999999 5667899999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Q 004552 616 VETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMAT 695 (745)
Q Consensus 616 ~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~ 695 (745)
|++++.+|++.|+|+||+.|+++++++++.+||.++||.+||+|||++||||+|++++|+|+.++|++||||+||+||++
T Consensus 652 v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~FNrlG~lqLDre~r~lis~lt~~t~~~lRdKf~RLtQIat 731 (773)
T KOG0412|consen 652 VEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQFNRLGGLQLDRELRALISYLTGVTQWNLRDKFARLTQIAT 731 (773)
T ss_pred HHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchHhhHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcccCCCh
Q 004552 696 ILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKP 737 (745)
Q Consensus 696 lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~Df~~ 737 (745)
|||+|+++++.+||++++||.+|+|||+||+++|++|+||+.
T Consensus 732 LLnle~~se~le~w~~~~g~~twrLt~~EVr~vl~lr~df~~ 773 (773)
T KOG0412|consen 732 LLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKVLALRIDFTQ 773 (773)
T ss_pred HHcccccchHHHhcCCCCCCceEEeCHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999973
No 2
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=100.00 E-value=8.2e-69 Score=577.58 Aligned_cols=304 Identities=34% Similarity=0.536 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcc
Q 004552 182 LLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQV 261 (745)
Q Consensus 182 L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~ 261 (745)
|++|+++|+++|+++|++|++++|.++++|||||||+||++++||++|++|||++|+.++|+.++.......+ +..++
T Consensus 1 L~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~--~~~~~ 78 (331)
T PF08318_consen 1 LDEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSD--SRSPV 78 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999998875543222 45789
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcccccc---
Q 004552 262 NFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLN--- 338 (745)
Q Consensus 262 ~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~R~l~~~~~~i~~~~~~~~~--- 338 (745)
+|+++||+|||+||++|++|+|+|++||||++|.+||++||.|||.|+++|+++|.+.|++++++++|+.|++....
T Consensus 79 ~~~~~lt~LFe~ia~ii~~h~~lI~~~yG~~~~~~vi~~Lq~E~D~q~~~Ild~f~~~R~l~~~~~~i~~~~~~~~~~~~ 158 (331)
T PF08318_consen 79 FYADALTKLFEHIATIIEQHQPLIEKYYGPGYMVYVIEKLQKECDLQAGIILDTFMDERRLDRKLQDIQSYNFSFLVKNS 158 (331)
T ss_pred cHHHHHHHHHHHHHHHHHHccHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred --------------CCCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHHH-H
Q 004552 339 --------------VGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVV-Q 403 (745)
Q Consensus 339 --------------~~~~~~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-q 403 (745)
.+.++++|||++|.+|+|+|.|+++|++|+|||.+||++.+...+.........+.+|.|++++ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~d~reld~lL~Eis~i~~~w~lY~rFi~~k~~~~~~~~~~~~~~~~~~~~~s~~~~k~~q 238 (331)
T PF08318_consen 159 GRSSSSSSRAASSSQSEDEGIDPRELDALLNEISLILQRWSLYCRFISRKWNEFSDPDPEKQLKLPPLISSSNLSRKVNQ 238 (331)
T ss_pred ccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhcCcHHHHHHH
Confidence 1356789999999999999999999999999999999976554443212334455889999999 9
Q ss_pred HHhhhHHhHHHHHHHHHHHHHHhhccC--------CCCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 004552 404 EITGFYVILEGFFMVENVRKAIRIDEY--------VPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLS 475 (745)
Q Consensus 404 el~~~Yi~Le~~~l~~Sv~KAi~~de~--------~~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln~~~~~L~ 475 (745)
+|+++|++||+|||++||+||+++|+. +++.++||+|||+|||+|||++|+++|||++++|+++|+++++|+
T Consensus 239 ell~~Y~~Le~~y~~~Sv~KAi~lde~p~~~~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in~~~~iL~ 318 (331)
T PF08318_consen 239 ELLGYYIPLEEFYLRRSVEKAIQLDELPSLNSLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVINHLVRILQ 318 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 467799999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHhcc
Q 004552 476 NEY-QEALQQKTR 487 (745)
Q Consensus 476 ~~~-~~~l~~~l~ 487 (745)
++| .++|++||+
T Consensus 319 ~d~l~~~l~~kl~ 331 (331)
T PF08318_consen 319 NDFLIGFLQRKLR 331 (331)
T ss_pred HHHHHHHHHHhcC
Confidence 999 779999985
No 3
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=100.00 E-value=6.2e-67 Score=559.75 Aligned_cols=303 Identities=37% Similarity=0.617 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcc
Q 004552 182 LLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQV 261 (745)
Q Consensus 182 L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~ 261 (745)
|++|+++|+++|+++|++|+++||.++++|||||||+||++++||++|++|+|++|+.+||+.+++.... .+++..++
T Consensus 1 L~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~--~~~~~~~~ 78 (324)
T smart00762 1 LDEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGA--SDDTRAAV 78 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccc--cccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999877653221 11235689
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhcccccc---
Q 004552 262 NFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAEINTQNKNLLN--- 338 (745)
Q Consensus 262 ~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~R~l~~~~~~i~~~~~~~~~--- 338 (745)
+|+++||+|||+||++|++|+|+|++||||++|.+||++||.|||.|++.|+++|.+.|++.+++++|++|.+..++
T Consensus 79 ~~a~~lt~Lfe~ia~ii~~h~~~I~~~yG~~~~~~vi~~Lq~E~D~q~~~Ild~f~~~R~l~~~~~~i~~~~~~~~~~~~ 158 (324)
T smart00762 79 FYADTLTHLFENVATIIEQHQPVIEKYYGPDGMLYVITKLQKEADLQGGIILDTFMDERRIDRLISDINSYNHAQLHAGA 158 (324)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred --------CCCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCC------CCCchhhhhhcccCchHHHHHH
Q 004552 339 --------VGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVD------PALVPRATKAFRSGSFSKVVQE 404 (745)
Q Consensus 339 --------~~~~~~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~~------~~~l~~~~~~~~~~~l~~~~qe 404 (745)
.+..+++||+++|.+|+|++.|+++|++|+|||.+||++..+.. +..+ .....+.+|.|++++||
T Consensus 159 ~~~~~~~~~~~~~~~d~revd~lL~Eis~i~~~~~lY~rFi~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~s~l~~kvqe 237 (324)
T smart00762 159 SNDARASSNGEDEGLDPRELDAILEEISQILSRWELYCRFISRKINEFTERSQDPEEEKQEI-ELPKLLRDSKFSTKIQE 237 (324)
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccccccc-cccchhhcChHHHHHHH
Confidence 23567899999999999999999999999999999998755322 1111 12234478999999999
Q ss_pred HhhhHHhHHHHHHHHHHHHHHhhccCCC----CCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Q 004552 405 ITGFYVILEGFFMVENVRKAIRIDEYVP----DSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQE 480 (745)
Q Consensus 405 l~~~Yi~Le~~~l~~Sv~KAi~~de~~~----~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln~~~~~L~~~~~~ 480 (745)
|++.|++||+|||++|++||+++|++|. ++++||+|||+||++|+|++|+++|||++++|+++|+++++|++||++
T Consensus 238 ll~~Y~~le~~y~~~Sv~KAi~lde~~~~~~~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in~~~~~L~~d~~~ 317 (324)
T smart00762 238 LLGTYVPLETYYFRRSVEKAIKLDELPSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFINELASVLQNDYLG 317 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcccCCCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 004552 481 ALQQKTR 487 (745)
Q Consensus 481 ~l~~~l~ 487 (745)
+++++++
T Consensus 318 ~l~~~~~ 324 (324)
T smart00762 318 ALQQNLR 324 (324)
T ss_pred HHHHhcC
Confidence 9999985
No 4
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=100.00 E-value=5e-33 Score=329.85 Aligned_cols=610 Identities=14% Similarity=0.182 Sum_probs=433.4
Q ss_pred HHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHH--HHHHhhc----cccHHHHHHH
Q 004552 87 LDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLD--GVKTALD----EENFEAAAKF 160 (745)
Q Consensus 87 l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~--~v~~al~----~~d~e~AA~~ 160 (745)
++.+.+.+++|+..++.++..|.++|.+++.++..|.|..++.+++....++...-. .+..... ..+...||..
T Consensus 1 ~~~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~i 80 (710)
T PF07393_consen 1 FQEAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKI 80 (710)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHH
Confidence 356788999999999999999999999999999999999999999995555443221 2222211 2455999999
Q ss_pred HHHHHcccccc-CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHH
Q 004552 161 VQRFVEIDNKY-KDS-GSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIG 238 (745)
Q Consensus 161 i~r~l~i~~~~-~~~-~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~ 238 (745)
++.++.+.+.. ..+ .......|+.+++.++..++++|+.|++.+|...|.+|++++-.+ ++|..|.-.||.++-.
T Consensus 81 l~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~f---ngg~~~i~~fi~k~~~ 157 (710)
T PF07393_consen 81 LRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEF---NGGSSCIDFFINKHEF 157 (710)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHhChh
Confidence 99999998887 322 234789999999999999999999999999999999999999999 6788888899998765
Q ss_pred HHHHHhHH--------HHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcc--cHHHHHHHHHHH-HHH
Q 004552 239 MRWRMEYD--------NLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGED--GIVYAICELQEE-CDS 307 (745)
Q Consensus 239 ~~ar~~l~--------~~~~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~--~m~~vi~~lq~e-~d~ 307 (745)
+..+..+. ..|+.+.+++ ..+....+.+..+|+.|..+++++.++|+++||+. .|..++++++.+ +..
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~ 236 (710)
T PF07393_consen 158 FIDEDQLDESNGFEDEEIWEKLSDPD-SHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQE 236 (710)
T ss_pred hhhhhhhccccccchhHHHHhccCcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 55444441 3444444433 24556677899999999999999999999999944 788999999999 778
Q ss_pred HHHHHHHHHHHh-------------hhhhHHHHHHhhhccccccCCCCCCCChh-hHHHHHHHHHHHHHhHHHHHHHH--
Q 004552 308 RGCLILKKYMEY-------------RKLGKLSAEINTQNKNLLNVGVSEGPDPR-EVELYLEEILSLMQLGEDYTEFM-- 371 (745)
Q Consensus 308 q~~~Il~~f~~~-------------R~l~~~~~~i~~~~~~~~~~~~~~~~d~~-~~d~ll~Eis~il~~~~lY~rFi-- 371 (745)
++..+|+...+. ..+.+++++++.+ +.. ..+|+. .....++++ +- ++|.+|+
T Consensus 237 ~i~~lL~~a~~~s~~~YLr~l~~~y~~t~~lv~~L~~~-~~~------~~~~~~~~~~~~l~~~--~~---~lF~~~l~~ 304 (710)
T PF07393_consen 237 YIESLLEEASSISTLAYLRTLHGLYSQTKKLVDDLKEF-FSG------ENPDPDSSDSAFLDQL--VE---SLFEPYLED 304 (710)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHh-hcc------cCCCccchHHHHHHHH--HH---HHHHHHcCc
Confidence 888888766532 1455566666665 211 011110 011222222 11 4444444
Q ss_pred HHHhcccCCCCCCCchhhhhhcccCchHHHHHHHhhhHHhHHHH-------------HHHHHHHHHHh------------
Q 004552 372 VSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGF-------------FMVENVRKAIR------------ 426 (745)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~qel~~~Yi~Le~~-------------~l~~Sv~KAi~------------ 426 (745)
..-+.. ....|.......+..|-.+... -+..++.+++.
T Consensus 305 ~~Yl~~----------------E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~ 368 (710)
T PF07393_consen 305 DEYLEE----------------EKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQ 368 (710)
T ss_pred chHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 111000 0001111111111111111000 00001111110
Q ss_pred ------------------------------h-c--cCCCCCCcchhhHHHHHHHHHHHHHHhc-c---CCHHHHHHHHHH
Q 004552 427 ------------------------------I-D--EYVPDSLTTSMVDDVFYVLQSCLRRAIS-T---SNISSVIAVLSS 469 (745)
Q Consensus 427 ------------------------------~-d--e~~~~~~~SS~vDDvf~il~k~l~Rals-t---g~~~~~~a~ln~ 469 (745)
. . +..++.+...++..+.-+.+.++.||.. + --+..+.+++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~ 448 (710)
T PF07393_consen 369 ISSFMSSKLDRSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEI 448 (710)
T ss_pred HhhhhhcccCcccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 0 0 0012335678999999999999999965 2 255677778888
Q ss_pred HHHHHHHHHHH-HHHHhccCCccchhhhcCCCccccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHH
Q 004552 470 ASSLLSNEYQE-ALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVK 548 (745)
Q Consensus 470 ~~~~L~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LNn~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~ 548 (745)
+...|+..|++ +|......+.... ..++.+ .....|+-++|.++.....++...+...-|+....|. ..+
T Consensus 449 Ll~~l~~~~i~~~lea~~~~~~~~~--~~~~~~--~~~l~fl~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~-----~~~ 519 (710)
T PF07393_consen 449 LLQSLGEEHIEPALEAAYYKLSSQD--IAESKE--VPPLVFLELINQADTILQLLQIFYKEELLPLIQSSPD-----FLN 519 (710)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccc--ccccCC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcH-----HHH
Confidence 88888888887 7772221111000 001111 0133499999999999999999877665565544333 112
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhhcccccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcC
Q 004552 549 SCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMT 628 (745)
Q Consensus 549 s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt 628 (745)
.|+............-+..|++...+++..++..+|..+++.+|.|.+++...+...+++|..++..+......++..|+
T Consensus 520 ~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~ 599 (710)
T PF07393_consen 520 ECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLD 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 23332222223333455555555558888899999999999999999888776677899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHhcCCChhhhhhh
Q 004552 629 ANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDF 708 (745)
Q Consensus 629 ~~n~~~ll~~~~~~l~~~lE~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~lL~~e~~~e~~d~ 708 (745)
+.|.+.|+..+...+-..|.+.+++.+||..||++|.+||..+.+++.+|+.+.++++|..|.+||.|+.++ |+.+.++
T Consensus 600 ~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~~~v~~~F~~L~~l~nl~~v~-~~~l~~~ 678 (710)
T PF07393_consen 600 GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWGIPSVDEKFEALKELGNLFIVD-PENLKEL 678 (710)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhheeec-HHHHHHH
Confidence 999999999997777777777799999999999999999999999999999999999999999999999995 9999999
Q ss_pred hcCCCCCcccccCHHHHHHHHhcccCCChhHHh
Q 004552 709 WGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIA 741 (745)
Q Consensus 709 ~~~~~~~~~w~Ls~~E~~~il~lR~Df~~~~i~ 741 (745)
+.+. ..|.++++|++.++++|.||++..++
T Consensus 679 ~~~~---~~~~~~~~~i~~fi~~R~D~~~~~~~ 708 (710)
T PF07393_consen 679 CREG---QLGRFSPEEIYEFIQRRSDWKSIKID 708 (710)
T ss_pred Hhhc---cccCCCHHHHHHHHHHhhhhhhcccc
Confidence 9764 35999999999999999999987654
No 5
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-21 Score=211.80 Aligned_cols=625 Identities=15% Similarity=0.216 Sum_probs=417.9
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHH----HHHHhhhhhHHhHHHhHHHHHHhHhhhhhhH
Q 004552 37 RTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLD----KHL----LQLQKSAEVLDIVKADSDHMLSNVRSTSDLA 108 (745)
Q Consensus 37 ~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~----~~l----~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A 108 (745)
-...|+..|..++.+++.+...+|++|...++.+++.. .+| ..+..+..++..+++.+++.+.+|.+.+
T Consensus 30 p~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiT--- 106 (793)
T KOG2180|consen 30 PAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEIT--- 106 (793)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---
Confidence 34568999999999999999999999999999998432 344 2344455688999999999999999877
Q ss_pred HHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC--CCCcc---HHHHHH
Q 004552 109 DQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK--DSGSD---QREQLL 183 (745)
Q Consensus 109 ~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~--~~~~~---~~~~L~ 183 (745)
+.|++||.+|+|+..++..++++++|-..+++++..+++++|-+||.-+..++++.++|. .+.++ .++.|+
T Consensus 107 ----rdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~ 182 (793)
T KOG2180|consen 107 ----RDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESID 182 (793)
T ss_pred ----HHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 44443 788899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCh-------hHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 004552 184 TAKKQLEGIVKKRVLAAVDQRDH-------GTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQ 256 (745)
Q Consensus 184 ~~~~~L~~~~~~~F~~A~~~~D~-------~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~ 256 (745)
++...|...+.+.|.+|-..|.. ..+..-+++.-.+. +...-+.+ +|-|.+--..-...+. +
T Consensus 183 ~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~le-psvreelI-kwf~~qqL~ey~~IF~-------e-- 251 (793)
T KOG2180|consen 183 KLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALE-PSVREELI-KWFCSQQLEEYEQIFR-------E-- 251 (793)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhC-CccHHHHH-HHHHHHHHHHHHHHHh-------c--
Confidence 99999999999999999988876 22222222222110 01111111 2222221111111111 0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcc-cHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHhhhcc
Q 004552 257 DQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGED-GIVYAICELQEECD-SRGCLILKKYMEYRKLGKLSAEINTQNK 334 (745)
Q Consensus 257 ~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~-~m~~vi~~lq~e~d-~q~~~Il~~f~~~R~l~~~~~~i~~~~~ 334 (745)
...+...+-+..-|.|+.+.+.+.......+||++ +|.+.++.-+++.+ .+...|+.+-.++-.
T Consensus 252 -n~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~------------- 317 (793)
T KOG2180|consen 252 -NEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPD------------- 317 (793)
T ss_pred -cHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCcc-------------
Confidence 01223344455669999999999999988899988 78899998888866 667777654333322
Q ss_pred ccccCCCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCC-CCC----CchhhhhhcccCchHHHHHHHhhhH
Q 004552 335 NLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSV-DPA----LVPRATKAFRSGSFSKVVQEITGFY 409 (745)
Q Consensus 335 ~~~~~~~~~~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~-~~~----~l~~~~~~~~~~~l~~~~qel~~~Y 409 (745)
++.++ .-+++.-.|.+|+..|..+.+-. .++ ..|+.. --..+.++.++.+.+..|
T Consensus 318 ---------------v~lll----~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~-~~f~~~isScFEPhLtly 377 (793)
T KOG2180|consen 318 ---------------VKLLL----FALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKER-FNFEGAISSCFEPHLTLY 377 (793)
T ss_pred ---------------HHHHH----HHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccc-cchhhHHHHhcccchhhh
Confidence 22333 25677778999999887542211 111 111100 012567888899999999
Q ss_pred HhHHHHHHHHHHHHHHhhccCC--C-------CCCcchhhHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHH
Q 004552 410 VILEGFFMVENVRKAIRIDEYV--P-------DSLTTSMVDDVFYVLQSCLRRAIS-TSNISSVIAVLSSASSLLSNEYQ 479 (745)
Q Consensus 410 i~Le~~~l~~Sv~KAi~~de~~--~-------~~~~SS~vDDvf~il~k~l~Rals-tg~~~~~~a~ln~~~~~L~~~~~ 479 (745)
|..+..-|.+=++|.++....+ + +....|.. |+|...++|+--|.. +.+.+..-+..+.+.++|+ .|.
T Consensus 378 I~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsa-dlF~~Ykkcltq~~~Ls~n~dpl~~~~~~f~k~Lr-eYa 455 (793)
T KOG2180|consen 378 IESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSA-DLFVAYKKCLTQCSELSENNDPLIALLAVFSKWLR-EYA 455 (793)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHH-HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHH
Confidence 9999999999999998764321 1 12344444 999999999999965 3343666666667777777 776
Q ss_pred H-HHHHhccCCc---cchhhhc----CCCcc----ccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHH
Q 004552 480 E-ALQQKTREPN---LGAKLFL----GGVGV----QKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKV 547 (745)
Q Consensus 480 ~-~l~~~l~~~~---~~~~~~~----~~~~~----~~~~~~~~~~LNn~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~ 547 (745)
. .|..-++... .++..+. -|... .+.-...|..+++++.|.....++.+.+.+...+.|..+.+.
T Consensus 456 ~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~vs~--- 532 (793)
T KOG2180|consen 456 QKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKGVSF--- 532 (793)
T ss_pred HHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---
Confidence 5 5555554411 1111110 01000 012345788899999999999999888877777767655442
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhhccccc-ccChHhhhhhccCChHHHHHHHHHHHhHHHHhhh
Q 004552 548 KSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISY-ELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPL 626 (745)
Q Consensus 548 ~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~~~y-~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~ 626 (745)
......|..++..+++-+++-+..-+-|-+.++..+.| .+ ...+.+.+++..|+..+.+.....+..
T Consensus 533 -------s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l-----~~vgDQss~v~s~~~h~~q~~~~i~~~ 600 (793)
T KOG2180|consen 533 -------SEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNL-----EGVGDQSSYVSSLNFHLSQFVPLIRDA 600 (793)
T ss_pred -------HHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHh-----cCccccchhhHHHHHHHHhhhHHHHHH
Confidence 22234555566666666654444433343333333333 12 233456788888999888888877666
Q ss_pred c--ChhhHHHHHHHHHHHHHHHHHHHHh-ccccccchhhHHhHHHHHHHHHHhhcCc----------c--hhhhHHHHHH
Q 004552 627 M--TANNYDSFVHLIIDFIVKRLEVIMM-QKKFSQLGGLQLDRDTRASVSHFSSMTQ----------R--TVRDKFARLT 691 (745)
Q Consensus 627 L--t~~n~~~ll~~~~~~l~~~lE~~i~-~~~fn~lGal~ldkDvr~lis~l~~~~~----------~--~lRekF~rL~ 691 (745)
+ ++.+|..++...+..+....+..+. .+..+..||-||--|.-++.+.+-..+. | .+.-..+++.
T Consensus 601 ~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e 680 (793)
T KOG2180|consen 601 LALDRKYFAQFCVRLAASFIPKFLNVLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAE 680 (793)
T ss_pred hccccchHHHhhHHHHhhcchHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHH
Confidence 5 4457888988776666666666554 5778999999999999999999855421 1 2334566677
Q ss_pred HHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcc
Q 004552 692 QMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLR 732 (745)
Q Consensus 692 QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR 732 (745)
.|..+|-.+ .+-..+|+..- -...-.-+.+|..++|.++
T Consensus 681 ~iiK~lm~p-~~~~~~f~e~y-ikL~~~~~~a~~~~vLelK 719 (793)
T KOG2180|consen 681 MIIKVLMTP-LDPADDFYEQY-IKLLPDPDSAEWQKVLELK 719 (793)
T ss_pred HHHHHHhCC-CCchHHHHHHH-HHhcCCCcHHHHHHHHHhc
Confidence 777666544 44444554330 0011124567888888876
No 6
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-18 Score=194.23 Aligned_cols=599 Identities=16% Similarity=0.137 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHH
Q 004552 49 LHECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVND 127 (745)
Q Consensus 49 l~~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~ 127 (745)
|..|+.+.+.....+....+..+ .+.+++..|+. +++.+..-+.+++..+..++.--..++.++.....=++|..+
T Consensus 65 L~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~---k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r~r~~~ 141 (763)
T KOG3745|consen 65 LTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLRE---KNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPRSRAVD 141 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHhhhhccccccccccccHHHHHHHhhhhHHHHHH
Confidence 44555566666666666665444 44455555554 999999999999999998888888899999999999999999
Q ss_pred HHHHHHHHHHhhhhH-HHHHHhhc---cccHHHHHHHHHHHHccccccCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004552 128 TLLRIDAIVDRNNCL-DGVKTALD---EENFEAAAKFVQRFVEIDNKYKDS-GSDQREQLLTAKKQLEGIVKKRVLAAVD 202 (745)
Q Consensus 128 t~~~V~~v~~Lk~~~-~~v~~al~---~~d~e~AA~~i~r~l~i~~~~~~~-~~~~~~~L~~~~~~L~~~~~~~F~~A~~ 202 (745)
+.+++..-.++..-- .-+.+.+. ...-..||..++.++.|..+...+ -.+....+.+..+-|+..+.+.|..|.|
T Consensus 142 a~~lir~~~eF~s~~~~~i~s~i~~~~~~k~leaa~~~~kLl~isnel~~~~f~~tka~I~k~~~~lE~~lleeF~~~~R 221 (763)
T KOG3745|consen 142 AQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLISNELPYGKFSETKARIEKKYEVLEQNLLEEFNSAQR 221 (763)
T ss_pred HHHHHHHHHHHhccCchhHHHHHhcChhhhHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999777766543 33444444 255778899999999888877633 2236677888999999999999999999
Q ss_pred cCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHhH
Q 004552 203 QRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEEND 282 (745)
Q Consensus 203 ~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~ 282 (745)
++|.+.|..+++++..+ -| ....|++.+.....-.. .+..+++-...+..+|.++-.+++.++
T Consensus 222 ~~n~~~m~~~a~iL~~F----~G--~v~~y~n~~d~fid~~~-----------~~~~~~fi~~~~~di~~D~~~l~~~~s 284 (763)
T KOG3745|consen 222 EENIKKMAEFAKILSEF----KG--VVRMYLNCVDDFIDSDE-----------FQPEQPFISNILQDIFNDILKLCESES 284 (763)
T ss_pred cccHHHHHHHHHHHHHh----cc--hHHHHHHhHHHHHHHhh-----------ccchhhHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999 44 66778888765442110 112344555679999999999999999
Q ss_pred HHHHhhhCc-c-cHHHHHHHHHHH-HHHHHHHHHHHHHHh-------hhhhHHHHH-------HhhhccccccCCCCCCC
Q 004552 283 EILRGLCGE-D-GIVYAICELQEE-CDSRGCLILKKYMEY-------RKLGKLSAE-------INTQNKNLLNVGVSEGP 345 (745)
Q Consensus 283 ~iI~~~yg~-~-~m~~vi~~lq~e-~d~q~~~Il~~f~~~-------R~l~~~~~~-------i~~~~~~~~~~~~~~~~ 345 (745)
++|++.||. . +|..++++|+.. +...+..+++.-.+. |.+..+... +..+-+.... ..
T Consensus 285 k~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~~~~~l~ylR~L~~Lys~~~k~~~~L~~~~e~~~~-----~~ 359 (763)
T KOG3745|consen 285 KFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKEGKDFLAYLRDLYGLYSSTLKLSKDLVDYFEQLFI-----SD 359 (763)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc-----Cc
Confidence 999999993 3 578888888876 666666666543211 222222111 1111000000 00
Q ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHHHHHHhhhHHhHHHHHHHH------
Q 004552 346 DPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVE------ 419 (745)
Q Consensus 346 d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~qel~~~Yi~Le~~~l~~------ 419 (745)
|- .++ =...|+.+ +.+...|+..|.+|+..
T Consensus 360 d~----~~l-----st~~~q~f-----------------------------------~~~~~~y~e~e~~~~~n~~~~~~ 395 (763)
T KOG3745|consen 360 DN----QFL-----STLLEQIF-----------------------------------IDYLAKYIEVEDKYLQNTLKNLF 395 (763)
T ss_pred ch----hHH-----HHHHHHHH-----------------------------------HHHHhhHHHHHHHHHhhhchhhH
Confidence 00 011 01123333 33444444444444411
Q ss_pred --HHHHHHhh-----------------------------------------------ccCCCCCCcc-hhhHHHHHHHHH
Q 004552 420 --NVRKAIRI-----------------------------------------------DEYVPDSLTT-SMVDDVFYVLQS 449 (745)
Q Consensus 420 --Sv~KAi~~-----------------------------------------------de~~~~~~~S-S~vDDvf~il~k 449 (745)
+...+..+ +....++++| .++--+..+.+.
T Consensus 396 ~~~~k~s~~l~~~~~sp~~h~k~~~t~~~~~ld~~~~v~~r~N~~~d~~~~~~a~~s~~l~g~Tfis~dl~~~iLqe~ke 475 (763)
T KOG3745|consen 396 LETFKCSTLLPRFYESPKEHQKSNSTELGGKLDAKTLVAARTNTSKDRLAYQAAVISENLGGETFISEDLAIKILQETKE 475 (763)
T ss_pred HHHHHHHHhHHHHhcCchhhhhhhcccccccchhhHHHHHhhcCchhHHHHHHhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 00111000 0111122322 234446778888
Q ss_pred HHHHH--hccC--CHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCccchhhhcCCCccccchhHHHHHhhhHHHHHHHHH
Q 004552 450 CLRRA--ISTS--NISSVIAVLSSASSLLSNEYQE-ALQQKTREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVL 524 (745)
Q Consensus 450 ~l~Ra--lstg--~~~~~~a~ln~~~~~L~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LNn~~~s~~y~~ 524 (745)
++.|| +.+. -+-.+..+++.+.+.|..+|+. ++...+..-+. -.+.+.| ...|+..+|-.+...+++.
T Consensus 476 s~~Ra~~l~~~~dlp~~~l~i~~iLl~~L~~~hv~~ale~a~~~is~----a~~~vep---~l~Fl~~I~~~~~I~~l~s 548 (763)
T KOG3745|consen 476 SLARAKVLIDPQDLPLNILEIFKILLKFLGQEHVDYALETALAGISS----ADTRVEP---NLYFLEVINKGDIILQLMS 548 (763)
T ss_pred HHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh----hhcCCCc---chHHHHHHHHhhHHHHHHH
Confidence 99999 3322 2334446777777777777777 67666432111 0112223 5678999999999999999
Q ss_pred HHHHHHHHHHhhcCC-Chhh-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhh-hhcccccccChHhhhh
Q 004552 525 KLKHEIEEQCAEVFP-TPAD-REKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLD-SVATISYELSEAEYAD 601 (745)
Q Consensus 525 ~L~~~l~~~~~~~f~-~~~d-~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~-~~~~~~y~l~e~ey~~ 601 (745)
+..+...-|+...-| ...+ ..+-++.++.++ .+....+..+| +++-.+++-++. ..++.+|.+.+.+.
T Consensus 549 ~~~~~~~iP~i~~t~d~~~~~i~~kk~~i~~iE---~~v~~gL~~tI----n~li~~~~~il~~~qkk~df~p~s~~s-- 619 (763)
T KOG3745|consen 549 KFFKSELIPLISVTPDKLSEVIQKKKSFIQSIE---EKVAFGLDRTI----NVLIGHVKFILSTEQKKTDFKPDSINS-- 619 (763)
T ss_pred HHHhcccCccccCChhhhHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHHHhcccccccccCCcccCc--
Confidence 877766544333223 1122 223334444444 33344555666 777778888886 56778888833221
Q ss_pred hccCC-hHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHHHhhcCc
Q 004552 602 NEVND-PWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQ 680 (745)
Q Consensus 602 ~e~~d-~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~ 680 (745)
..++ ++|.+.+..+...+......+.+.|-+.+...+...+...|-..+.+.+||-.||+.+-.|+-.+.+++.+|..
T Consensus 620 -~~~~~~pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~l~~hl~~~~~s~~Gal~licDvn~y~~~i~~~~~ 698 (763)
T KOG3745|consen 620 -LTRDIEPAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRLLLSHLQQFKVSTAGALLLICDVNEYRTFIHSLGQ 698 (763)
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHHHHHHHheeccccceeeeccHHHHHHHHHHhCc
Confidence 1122 36889999999999999999999999999999988888888888999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcccCCCh
Q 004552 681 RTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKP 737 (745)
Q Consensus 681 ~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~Df~~ 737 (745)
.+|-.+|.-|.+||.||.+. |+.+.+.-. |+....++.+++..++++|.||+.
T Consensus 699 ~~vl~~F~tL~~L~nLliV~-pd~l~ev~k---~~~la~f~~~~I~efv~lR~D~r~ 751 (763)
T KOG3745|consen 699 PSVLPYFKTLKALANLLIVK-PDNLEEVGK---GKFLANFDREEIHEFVQLRTDFRI 751 (763)
T ss_pred ccHHHHHHHHHHHHHHHeeC-hhhHHHHhc---hhhhccccHHHHHHHHHHhhhhhH
Confidence 99999999999999999999 777666643 345566999999999999999985
No 7
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=99.77 E-value=2.1e-13 Score=146.85 Aligned_cols=575 Identities=15% Similarity=0.151 Sum_probs=346.4
Q ss_pred hHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhc---cccHHHHHHHHHHH-
Q 004552 89 IVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALD---EENFEAAAKFVQRF- 164 (745)
Q Consensus 89 ~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~---~~d~e~AA~~i~r~- 164 (745)
.+....+++.+.+. .+.-+.+.-.-+-++-..=+.|..|..+.+++-.+..-.+.+...+. .+|- ...|+-++
T Consensus 58 ~i~~~~~e~~~l~e-~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~--dmPnLl~~H 134 (742)
T COG5173 58 RIYGLEEELKSLVE-GKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDI--DMPNLLAYH 134 (742)
T ss_pred HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CChHHHHHH
Confidence 34444444444332 23344444444555555555566665555555544444444444443 3343 22344333
Q ss_pred --HccccccC--------CCCccHHHHHHHHHHHHHHHH----------HHHHHHHHHcCChhHHHHHHHhcccCCcchh
Q 004552 165 --VEIDNKYK--------DSGSDQREQLLTAKKQLEGIV----------KKRVLAAVDQRDHGTILRFIKLYSPLGIEEE 224 (745)
Q Consensus 165 --l~i~~~~~--------~~~~~~~~~L~~~~~~L~~~~----------~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~e 224 (745)
+.=.+.|. ...+|...|+.++...|.+.. .+.|-+-+++|....+.+.||+......+++
T Consensus 135 ~kl~~ardF~eq~~~~a~e~~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De 214 (742)
T COG5173 135 TKLYDARDFGEQLDMYATEISHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDE 214 (742)
T ss_pred HHHccHHHHhHHHHHHHhhcccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHH
Confidence 22223332 334456677778877777655 3334477799999999999999998877777
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcc---------cHHHHHHHHHHHHHH------HHHHhHHHHHhhh
Q 004552 225 GLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQV---------NFVGCLTNLFKDIVL------AIEENDEILRGLC 289 (745)
Q Consensus 225 Gl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~---------~~~~~L~~Lfe~ia~------ii~~h~~iI~~~y 289 (745)
-+..+- .|.+. +..++ ..|. .|...=++-+++... +-+..+..-..|-
T Consensus 215 ~~~~Ir---------daks~-------lp~SQ-D~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi 277 (742)
T COG5173 215 LTRKIR---------DAKSE-------LPKSQ-DNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYI 277 (742)
T ss_pred HHHHHH---------HHHhc-------CCCcC-CCcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 666652 11111 00110 0110 001111112222211 2223333333333
Q ss_pred Ccc----cHHHHHHH------HHHHHHHHHHHHHHHHHHh--hhhhHHHHHHhhhccccccCCCCCCCChhhHHHHHHHH
Q 004552 290 GED----GIVYAICE------LQEECDSRGCLILKKYMEY--RKLGKLSAEINTQNKNLLNVGVSEGPDPREVELYLEEI 357 (745)
Q Consensus 290 g~~----~m~~vi~~------lq~e~d~q~~~Il~~f~~~--R~l~~~~~~i~~~~~~~~~~~~~~~~d~~~~d~ll~Ei 357 (745)
|.+ +|-.+..- .-.-|-.--..|+..|.+. .-+-.++.+.... .+| . .++
T Consensus 278 ~d~sgelnmDfIf~dL~~i~e~i~~~~pp~~NI~~~y~~~YqecL~~L~td~v~~-----------~~~---a----~~i 339 (742)
T COG5173 278 FDNSGELNMDFIFKDLSFIRENISLSFPPFDNILTLYHNNYQECLLKLFTDEVTE-----------RLD---A----GEI 339 (742)
T ss_pred hcCcchhhhHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCc---c----hHH
Confidence 333 22111110 0000111126777777665 2344555544331 112 1 123
Q ss_pred HHHHHhHHHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHHHHHHhhhHHhHHHHHHHH--------HHHHHHhhcc
Q 004552 358 LSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVE--------NVRKAIRIDE 429 (745)
Q Consensus 358 s~il~~~~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~qel~~~Yi~Le~~~l~~--------Sv~KAi~~de 429 (745)
-.|+.--..|..|+..+.+-.. ....++..++.-.+|...|..|-...|++ +|.++...++
T Consensus 340 L~ii~f~~~y~~t~e~~f~f~~-----------dev~~~l~d~e~g~L~~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ 408 (742)
T COG5173 340 LAIIEFVGNYYNTIESKFNFIA-----------DEVGGRLLDNETGELLEKYTKLAQEKLKEWVMNLTRIEVDKFYARNE 408 (742)
T ss_pred HHHHHHHHHHHHHHHHhCCccH-----------HHhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3366666788888866433100 01122233434445566666655555554 6666666655
Q ss_pred CC----CCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH---HHHHHHHHHhccCC-ccchhhhcCCCc
Q 004552 430 YV----PDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLS---NEYQEALQQKTREP-NLGAKLFLGGVG 501 (745)
Q Consensus 430 ~~----~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln~~~~~L~---~~~~~~l~~~l~~~-~~~~~~~~~~~~ 501 (745)
+| +|.+.+...--+|.++.+.+.-+..|.+.+++.-++.++.+.|. ..|...|...++++ +..+.. .+
T Consensus 409 ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~tk~q~~wks~l~ee~~kq~~~npEs----~~ 484 (742)
T COG5173 409 EPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTITKYQEIWKSNLVEEMDKQFKSNPES----SS 484 (742)
T ss_pred CCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----CC
Confidence 54 46688888889999999999999999999999999999998885 45666666666541 110000 00
Q ss_pred cccchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCc
Q 004552 502 VQKTGTEIATALNNMD-VSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRI 580 (745)
Q Consensus 502 ~~~~~~~~~~~LNn~~-~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl 580 (745)
| ..-.+||++..|.. .|++|+..+-...-+.+...|-. . -...|+.+.+.|-++++-+.-.|+..+...+
T Consensus 485 p-~Gl~eyliav~Nd~lK~A~y~~~~~sntfeLitseye~-d-------~~~~lgkTvDgfi~I~~~s~~~l~~~i~~d~ 555 (742)
T COG5173 485 P-AGLEEYLIAVGNDGLKIAQYITSLPSNTFELITSEYEN-D-------EVKELGKTVDGFIDILKASNTFLAEFIIYDC 555 (742)
T ss_pred c-chHHHHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHH-H-------HHHHhcccchhHHHHHhhhhHHHHHHHHHhh
Confidence 0 12568999998888 89999988765444333333321 1 1122444556677888888888888888999
Q ss_pred hhhhh-hhcccccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHH-HHHHHHHHHHHHhcc-ccc
Q 004552 581 RPVLD-SVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLI-IDFIVKRLEVIMMQK-KFS 657 (745)
Q Consensus 581 ~~~l~-~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~-~~~l~~~lE~~i~~~-~fn 657 (745)
+|.++ -|.+.||. ++.++.++.+++.++..|++++++-.|..|++.+ ..-+.++|-..-.+. -++
T Consensus 556 ~pa~~~iF~~~Wy~------------gS~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~~k~a~~~ 623 (742)
T COG5173 556 QPAIDKIFTDEWYG------------GSVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKRASIA 623 (742)
T ss_pred hhhHHHhcCccccc------------cchHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 99996 47889984 4577889999999999999999999999999977 444555666644432 333
Q ss_pred cc-hhhHHhHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcccCC
Q 004552 658 QL-GGLQLDRDTRASVSHFSSMTQ-RTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDF 735 (745)
Q Consensus 658 ~l-Gal~ldkDvr~lis~l~~~~~-~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~Df 735 (745)
.= ..-++-+|...++..|.++.. ..+|+.|.-+..+-..+...+++-+.++|..- --+.|....+-++.||..|.|.
T Consensus 624 ~~na~~~lksD~~~~y~~f~~y~d~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~l-keiYwD~~~sli~~Ilk~R~Dl 702 (742)
T COG5173 624 EENASRTLKSDHTKLYEMFSGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSL-KEIYWDIKKSLIKTILKKRQDL 702 (742)
T ss_pred chhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHcccccCCchHHHHHHHHH-HHHhccchHHHHHHHHHhhhhh
Confidence 33 344667999999999999765 47999999999998888888888888888541 1267888889999999999999
Q ss_pred Chh
Q 004552 736 KPE 738 (745)
Q Consensus 736 ~~~ 738 (745)
...
T Consensus 703 ~~s 705 (742)
T COG5173 703 TES 705 (742)
T ss_pred HHH
Confidence 875
No 8
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=99.76 E-value=1.3e-16 Score=186.06 Aligned_cols=402 Identities=17% Similarity=0.205 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHhhhccccccCC
Q 004552 263 FVGCLTNLFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEY--RKLGKLSAEINTQNKNLLNVG 340 (745)
Q Consensus 263 ~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~--R~l~~~~~~i~~~~~~~~~~~ 340 (745)
+...+.++++++..+.....|. |||. ..|.+.|.+. +.+...++++...
T Consensus 110 ~l~~l~~~~~DL~~v~~~~~~c----fPp~-----------------~~I~~~y~~~YH~~l~~~l~~l~~~-------- 160 (566)
T PF06046_consen 110 HLEALRWVLEDLQVVKDDVVPC----FPPE-----------------YDIFNTYVSMYHNALSDHLQELISP-------- 160 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCccc----CCCC-----------------ChHHHHHHHHHHHHHHHHHHHHccC--------
Confidence 4555667788877766665555 9998 7777777765 4455555554221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhH-HHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHHHHHHhhhHHhHHHHHHHH
Q 004552 341 VSEGPDPREVELYLEEILSLMQLG-EDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEITGFYVILEGFFMVE 419 (745)
Q Consensus 341 ~~~~~d~~~~d~ll~Eis~il~~~-~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~qel~~~Yi~Le~~~l~~ 419 (745)
.++..+ +-.++ .| ..|..+|... . +.+ ...+.+-......++|+..|+......+.+
T Consensus 161 ---~l~~~~-------ll~ll-~W~~~Y~~~m~~~-~--------l~~--~~~l~plL~~~~~~~L~~~Yl~~~~~~~~e 218 (566)
T PF06046_consen 161 ---DLEAND-------LLSLL-SWVNTYPSIMGHP-D--------LAI--KEQLGPLLPDEKLEELEDDYLSRIQKKMKE 218 (566)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHH-------Hhhhe-echhhChHhhcCC-c--------ccc--hhhccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 112222 22233 45 7788765321 1 000 011123345667788999999999999999
Q ss_pred HHHHHHhhcc-------CC----CCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 004552 420 NVRKAIRIDE-------YV----PDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQK--- 485 (745)
Q Consensus 420 Sv~KAi~~de-------~~----~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln~~~~~L~~~~~~~l~~~--- 485 (745)
-+.++++.|. .| +|.+.|+.+-|+|.++++.++.|-.++....+..++.+++++|. .|...+...
T Consensus 219 W~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~-~~~~~~~~~~~~ 297 (566)
T PF06046_consen 219 WMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLK-SYQDAWQEFKEE 297 (566)
T ss_dssp HHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999998752 22 47789999999999999999999889999999999999999887 554433333
Q ss_pred -ccCCccchhhhcCCCccccchhHH-HHHhhhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHH
Q 004552 486 -TREPNLGAKLFLGGVGVQKTGTEI-ATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQ 563 (745)
Q Consensus 486 -l~~~~~~~~~~~~~~~~~~~~~~~-~~~LNn~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ 563 (745)
++..+.. +... ....-..| ++.+||...|.+|+.++...+.......|. ..+. ..+..+.+.|.+
T Consensus 298 ~~~~~~~~---~~~~--~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~ 364 (566)
T PF06046_consen 298 HFKDRSSV---KPKE--NPPGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYM-----ERIS---SDLEELMDGFDD 364 (566)
T ss_dssp HHHHHHHH---HHCC----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHH-----HHHH---HHHCTTHHHHHH
T ss_pred HHHhhhcc---cccc--cccchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHH-----hhhh---hhHHHHHHHHHH
Confidence 3210000 0000 00113344 568999999999999998887655444332 1222 234455688889
Q ss_pred HHHHHHHHHHHhhhhCchhhhhh-hcccccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHH
Q 004552 564 ILNMGMEQLVATVTPRIRPVLDS-VATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDF 642 (745)
Q Consensus 564 ll~~~i~~L~~~i~~rl~~~l~~-~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~ 642 (745)
+.+.|+..|.+.+...++|++.. |++.||. +..+..++.+++.++..|+.+|.+.+|+.|+..+...
T Consensus 365 l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~------------~~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~ 432 (566)
T PF06046_consen 365 LAKECCQYLLEEIFNDLKPHFKKLFTKKWYS------------GEAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDR 432 (566)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHCTTTSGGGCT------------S-HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhCcCcCcC------------cchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999998899999965 5566663 2688999999999999999999999999999987555
Q ss_pred HH-HHHHHHHhccc-------cccchhhHHhHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHhcCCChhhhhhhhcCCC
Q 004552 643 IV-KRLEVIMMQKK-------FSQLGGLQLDRDTRASVSHFSSMTQ-RTVRDKFARLTQMATILNLEKVSEILDFWGENS 713 (745)
Q Consensus 643 l~-~~lE~~i~~~~-------fn~lGal~ldkDvr~lis~l~~~~~-~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~ 713 (745)
++ .++.. +++++ -..-+|-++.+|+..+.++|.+... ..+...|..|..|..++.+++++.+...|..-.
T Consensus 433 ~v~~Yl~~-l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~ 511 (566)
T PF06046_consen 433 VVKEYLRA-LMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLL 511 (566)
T ss_dssp HHHHHHHG-GGG---------CCCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55 45555 54432 2566999999999999999999873 468899999999999999998886654443311
Q ss_pred CCcccccCHHHHHHHHhcccCCChhHHhcc
Q 004552 714 GPMTWRLTPAEVRRVLGLRVDFKPEAIALL 743 (745)
Q Consensus 714 ~~~~w~Ls~~E~~~il~lR~Df~~~~i~~l 743 (745)
. --|.+++.-+..+|.+|.|+++.+++.+
T Consensus 512 ~-~ypD~~~~~v~alL~~R~D~~r~~~~~i 540 (566)
T PF06046_consen 512 Q-KYPDISEEHVEALLALRGDLSRSEVKEI 540 (566)
T ss_dssp C-C-TT--SHHHHHHHCT-TT--HHHHHHH
T ss_pred H-hCCCCCHHHHHHHHHhccCCCHHHHHHH
Confidence 1 2477999999999999999999887754
No 9
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.74 E-value=6.1e-15 Score=161.59 Aligned_cols=343 Identities=13% Similarity=0.157 Sum_probs=257.6
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHH----HHHHhhhhhHHhHHHhHHHHHHhHhhhh
Q 004552 34 AYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLD----KHL----LQLQKSAEVLDIVKADSDHMLSNVRSTS 105 (745)
Q Consensus 34 ~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~----~~l----~~L~~~~~~l~~~~~~~~~l~~~i~~~~ 105 (745)
..+-+..|+++|...+..++.+...+|+++...++.+.... ..| ..+..+.+++..+++.|.+.+.+|.+.|
T Consensus 12 ~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it 91 (383)
T PF04100_consen 12 ELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEIT 91 (383)
T ss_pred HhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999887222 233 3467777899999999999999999877
Q ss_pred hhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC--CCCcc---HHH
Q 004552 106 DLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK--DSGSD---QRE 180 (745)
Q Consensus 106 ~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~--~~~~~---~~~ 180 (745)
+.|++||.+|+|+..++..++++++|.++++++...+++++|..+|..+..+.++...|. .+.|. ...
T Consensus 92 -------~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~ 164 (383)
T PF04100_consen 92 -------RDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSK 164 (383)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887 33443 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cC------ChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 004552 181 QLLTAKKQLEGIVKKRVLAAVD-QR------DHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELME 253 (745)
Q Consensus 181 ~L~~~~~~L~~~~~~~F~~A~~-~~------D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~ 253 (745)
.+...+..|...+...|+.+.. .+ ....+...|.+.-.+|.. --+....|.|.+.-..-+..+..
T Consensus 165 ~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~--~r~~li~wf~~~qL~eY~~iF~~------ 236 (383)
T PF04100_consen 165 RIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPD--VREELIDWFCNKQLKEYRRIFRE------ 236 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHHHHHcc------
Confidence 8888999999999999999862 11 345677778888888763 22344456665443333333321
Q ss_pred hhccCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcc-cHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHhh
Q 004552 254 QSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGED-GIVYAICELQEECD-SRGCLILKKYMEYRKLGKLSAEINT 331 (745)
Q Consensus 254 ~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~-~m~~vi~~lq~e~d-~q~~~Il~~f~~~R~l~~~~~~i~~ 331 (745)
...+.-.+-+.+=|-|+.+++..+......+||+. +|...|+.-|++++ .+...||..-..
T Consensus 237 ----~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~------------- 299 (383)
T PF04100_consen 237 ----NDEAASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKS------------- 299 (383)
T ss_pred ----cccccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCC-------------
Confidence 12233345566779999999999999999999988 69999999999977 555555544211
Q ss_pred hccccccCCCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCC----CCCchhhhhhcccCchHHHHHHHhh
Q 004552 332 QNKNLLNVGVSEGPDPREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVD----PALVPRATKAFRSGSFSKVVQEITG 407 (745)
Q Consensus 332 ~~~~~~~~~~~~~~d~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~qel~~ 407 (745)
.+| +..++. .++++-.|-++|.+|........ +..-++.......|.+++++.++++
T Consensus 300 ------------~~d---v~~Ll~----aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~ 360 (383)
T PF04100_consen 300 ------------ELD---VKLLLK----ALQKTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLS 360 (383)
T ss_pred ------------CCc---HHHHHH----HHHHHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHH
Confidence 123 334443 66777788888888774221110 0000000001245789999999999
Q ss_pred hHHhHHHHHHHHHHHHHHhh
Q 004552 408 FYVILEGFFMVENVRKAIRI 427 (745)
Q Consensus 408 ~Yi~Le~~~l~~Sv~KAi~~ 427 (745)
.||..+...|.+.+.++++-
T Consensus 361 iyv~~qdk~L~~~l~~~~~~ 380 (383)
T PF04100_consen 361 IYVDSQDKNLSEKLDKFISE 380 (383)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 10
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.60 E-value=5.7e-09 Score=124.57 Aligned_cols=621 Identities=16% Similarity=0.216 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 45 MTRLLHECIAYQRALDVDLDSLLSQRTD-LDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 45 i~~~l~~l~~~~~~~~~~L~~~~~~~~~-~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+..+..+|+...+++...|+....+... +=|-+.++++++.....+++....+...+.....-+...-..+.+||..|+
T Consensus 36 ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~ 115 (766)
T PF10191_consen 36 LSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKS 115 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Confidence 5555566666666666666655444431 113334455555466666777766666666544433333367999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccCCC--CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004552 124 RVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDS--GSDQREQLLTAKKQLEGIVKKRVLAAV 201 (745)
Q Consensus 124 rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~--~~~~~~~L~~~~~~L~~~~~~~F~~A~ 201 (745)
|.+.|.+.+...-..-.....|...+..+||..+|.-+..+..=-..+... -.+-+..|+..+++|+..+.-+.-.|.
T Consensus 116 rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al 195 (766)
T PF10191_consen 116 RMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQAL 195 (766)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999988884322223221 124789999999999999999999999
Q ss_pred HcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHh
Q 004552 202 DQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEEN 281 (745)
Q Consensus 202 ~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h 281 (745)
.+.|.+....|+++|--||+.+.=...|.+--+..+ ...|.....++ ....|...|..+|+.+...+.++
T Consensus 196 ~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l--------~~~W~~~~~~~--~~~~~~~~L~~fyd~ll~~l~~E 265 (766)
T PF10191_consen 196 NSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPL--------QRLWQEYCQSD--QSQSFAEWLPSFYDELLSLLHQE 265 (766)
T ss_pred HhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877777755554433 34454433322 12578889999999999999999
Q ss_pred HHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HhhhccccccCCCCCCCChhhHHHHHHHHHHH
Q 004552 282 DEILRGLCGEDGIVYAICELQEECDSRGCLILKKYMEYRKLGKLSAE-INTQNKNLLNVGVSEGPDPREVELYLEEILSL 360 (745)
Q Consensus 282 ~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~Il~~f~~~R~l~~~~~~-i~~~~~~~~~~~~~~~~d~~~~d~ll~Eis~i 360 (745)
..-....||..+- ++..+..+.=... + ..+...+.. ++... +. .-+..+..+
T Consensus 266 ~~w~~~vF~~~~~--~~~~ll~~~L~~L----~-----PS~~~~l~~al~~~~-------------~~---~~L~~L~~l 318 (766)
T PF10191_consen 266 LKWCSQVFPDESP--VLPKLLAETLSAL----Q-----PSFPSRLSSALKRAG-------------PE---TKLETLIEL 318 (766)
T ss_pred HHHHHHHcCCchh--HHHHHHHHHHHhc----C-----ccHHHHHHHHHhhcC-------------ch---hhHHHHHHH
Confidence 9999999998754 3333333211000 0 111111111 11110 00 114444444
Q ss_pred HHhHHHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHHHHHH-------hhhHHhHHHHHHHHHHHHHHhhccCCC-
Q 004552 361 MQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKVVQEI-------TGFYVILEGFFMVENVRKAIRIDEYVP- 432 (745)
Q Consensus 361 l~~~~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~qel-------~~~Yi~Le~~~l~~Sv~KAi~~de~~~- 432 (745)
.+-..-|.+-+...+.+.... . ........++-+ ...|-.+|+.++...+. .+.+...+.
T Consensus 319 ~~~t~~Fa~~l~~~l~~~~~~-~----------~l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~-~l~~~~~~~~ 386 (766)
T PF10191_consen 319 YQATEHFARNLEHLLSSLPGE-S----------NLSKVEELLQALFEPFKPYQQRYGELERRFLSAQLS-ALDLESAELS 386 (766)
T ss_pred HHHHHHHHHHHHHHHhccccc-c----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCcHH
Confidence 444455555554444321100 0 000122222223 33555566666666654 333321110
Q ss_pred --CCCcchhhHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhcCCCccccch
Q 004552 433 --DSLTTSMVDDVFYVLQSCLRRAIS-TSNISSVIAVLSSASSLLSNEYQEALQQKTRE---PNLGAKLFLGGVGVQKTG 506 (745)
Q Consensus 433 --~~~~SS~vDDvf~il~k~l~Rals-tg~~~~~~a~ln~~~~~L~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~ 506 (745)
-...++.+..+|-++..++.||.. ||-. .++.++..+..++. .|+..+..-++. ... ......+.......
T Consensus 387 d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~-~~~~Ll~Ald~~~~-~y~~~~~~~l~~lr~~~~-~~~~~~~~~~~eDW 463 (766)
T PF10191_consen 387 DAVRRLEESIPKLFGLAEEAVDRCIAFTGGY-GVPGLLKALDSIFS-QYLSSLTATLRSLRKSCG-LDSTATSSASSEDW 463 (766)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-CCcccccccccccH
Confidence 013466777999999999999988 6532 44455666655555 444433333221 000 00000011111122
Q ss_pred hHHHHHhhhHHHHHHHHHHHHH-------HHHHHHhhcC-------------------------CC----------hhhH
Q 004552 507 TEIATALNNMDVSSEYVLKLKH-------EIEEQCAEVF-------------------------PT----------PADR 544 (745)
Q Consensus 507 ~~~~~~LNn~~~s~~y~~~L~~-------~l~~~~~~~f-------------------------~~----------~~d~ 544 (745)
..|-.+|+=+++|.+.+.++.. .+.+.. ..| ++ ..+.
T Consensus 464 s~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~ 542 (766)
T PF10191_consen 464 SLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELA-SKLLSSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRLAEL 542 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccCCccccccccccccCcccccchHHHHhhccccHHHH
Confidence 3455666666666666665542 222111 111 00 0000
Q ss_pred HHHHHHHHh-----------hhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhhccc-cccc--ChH-------hhhhhc
Q 004552 545 EKVKSCLSE-----------LGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATI-SYEL--SEA-------EYADNE 603 (745)
Q Consensus 545 ~~~~s~l~~-----------l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~~-~y~l--~e~-------ey~~~e 603 (745)
......+.. |......+..+.+.+-.-.++.+..+|+..|..+... .|.- ..+ .|+.
T Consensus 543 ~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~-- 620 (766)
T PF10191_consen 543 PNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSL-- 620 (766)
T ss_pred HHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCcccc--
Confidence 001111111 1122233334444444444777777788777665332 1211 000 0110
Q ss_pred cCChHHHHHHHHHHHhHHHHhhhcChh------------------------hHHHHHHHHHHHHHH-----HHHHHHhcc
Q 004552 604 VNDPWVQRLLHAVETNAAWLQPLMTAN------------------------NYDSFVHLIIDFIVK-----RLEVIMMQK 654 (745)
Q Consensus 604 ~~d~~~~~f~~~~~~l~~~~~~~Lt~~------------------------n~~~ll~~~~~~l~~-----~lE~~i~~~ 654 (745)
.-..|+.++-..+-.+-..+.++.+.. ..+.+.+.-+..++. ++|.+..-.
T Consensus 621 ~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~ 700 (766)
T PF10191_consen 621 SPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIP 700 (766)
T ss_pred ChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011255555555554444433333332 122233333333333 455533347
Q ss_pred ccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhccc
Q 004552 655 KFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRV 733 (745)
Q Consensus 655 ~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~ 733 (745)
..++.|+-||--||..+.+.+..++.. .=.-|.++..+|... +++..+.-. .+.+..+..|.++|.
T Consensus 701 ~l~~~~~~QL~~Di~Yl~nVl~aLg~~----~~~~L~~~~~ll~~~-~~~~~~~~~--------~~~~~~~~~v~~mr~ 766 (766)
T PF10191_consen 701 ELSESGAKQLATDIDYLSNVLSALGLS----PPPNLQQLVTLLKAP-PDQYAQVAK--------GLPRRLVAAVAKMRN 766 (766)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCC-HHHHHHHHh--------cCCHHHHHHHHHHhC
Confidence 889999999999999999999988642 113689999999999 565554432 156677888888873
No 11
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.1e-07 Score=105.33 Aligned_cols=297 Identities=16% Similarity=0.127 Sum_probs=202.2
Q ss_pred chHHHHHHHhhhHHhHHHHHHHHHHHHHHhhc--------cCC---CCCCcchhhHHHHHHHHHHHHHHhccCCHHHHHH
Q 004552 397 SFSKVVQEITGFYVILEGFFMVENVRKAIRID--------EYV---PDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIA 465 (745)
Q Consensus 397 ~l~~~~qel~~~Yi~Le~~~l~~Sv~KAi~~d--------e~~---~~~~~SS~vDDvf~il~k~l~Ralstg~~~~~~a 465 (745)
.-.+.+..|+..|....+..+++=+.++.+++ +|+ .|.+-++++-++|.++...+.-+..+. -+....
T Consensus 326 l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~-~Dl~~~ 404 (667)
T KOG2286|consen 326 LRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATS-SDLSGK 404 (667)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhH-HHHHHH
Confidence 44556778899999988889998888877765 222 245789999999999999999887762 222222
Q ss_pred HHHHHHHHHH---HHHHH-HHHHhccCCccchhhhcCCCcccc-chhHHH-HHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 004552 466 VLSSASSLLS---NEYQE-ALQQKTREPNLGAKLFLGGVGVQK-TGTEIA-TALNNMDVSSEYVLKLKHEIEEQCAEVFP 539 (745)
Q Consensus 466 ~ln~~~~~L~---~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~LNn~~~s~~y~~~L~~~l~~~~~~~f~ 539 (745)
+...+..-+. ..|.. .+..... +. +-.. .-..|+ ...||-..+.+|+..+...-
T Consensus 405 ~~~~~~~~v~~f~~~~~~~~~~~~e~----------~~-~~~~~~l~~y~iA~~N~~~~~a~~~~~~~~~~--------- 464 (667)
T KOG2286|consen 405 ILRSLLSEVPSFARNYPKAQDEDQES----------HR-REQPEGLREYLIANINNNLKMAMLMVNLKSKY--------- 464 (667)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHh----------ch-hcccccHHHHHHHHHhchhHHHHHHHHHHhcc---------
Confidence 2222222111 12211 1111110 00 0001 123344 56888889999888764332
Q ss_pred ChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhh-hcccccccChHhhhhhccCChHHHHHHHHHHH
Q 004552 540 TPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDS-VATISYELSEAEYADNEVNDPWVQRLLHAVET 618 (745)
Q Consensus 540 ~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~-~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~ 618 (745)
| .+..+.+.|..+.+.|...|+..+.+.++|+++. |.+.||. +..+..++.+++.
T Consensus 465 ---d---------~~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~------------g~~~~~Iv~T~~d 520 (667)
T KOG2286|consen 465 ---D---------TLKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCA------------GSVTENIVATLDD 520 (667)
T ss_pred ---c---------hhHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhc------------hhhHHHHHHHHHH
Confidence 1 1333446777899999999999999999999975 5667773 2477889999999
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHH-HHHHHHHhccccccchhhHHhHHHHHHHHHHhhcCc--chhhhHHHHHHHHHH
Q 004552 619 NAAWLQPLMTANNYDSFVHLIIDFIV-KRLEVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQ--RTVRDKFARLTQMAT 695 (745)
Q Consensus 619 l~~~~~~~Lt~~n~~~ll~~~~~~l~-~~lE~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~--~~lRekF~rL~QI~~ 695 (745)
++..|+.+..+. |..|+..+...++ .++-+...++-++.=++-++-+|...+.-+|..+.. ..+++.+..|..+
T Consensus 521 y~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el-- 597 (667)
T KOG2286|consen 521 YLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAEL-- 597 (667)
T ss_pred HHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHH--
Confidence 999999999888 9999997755544 466664445444445677777999999999998866 2345555554444
Q ss_pred HhcCCChhhhhhhhcCCCCCcccccCHHHHHHHHhcccCCChhHHhcc
Q 004552 696 ILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIALL 743 (745)
Q Consensus 696 lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il~lR~Df~~~~i~~l 743 (745)
+...+++-+..+|..-.+ ..|....+-+.+|+..|.|....+++++
T Consensus 598 -~~~~d~d~~~~~~~~l~~-~YpD~~~~~l~~il~~R~dls~~~~k~i 643 (667)
T KOG2286|consen 598 -ISLQDPDLIKLEVSTLLE-CYPDIPKDHLEAILKIRGDLSRSEKKKI 643 (667)
T ss_pred -HhcCChHHHHHHHHHHHH-HCCCCcHHHHHHHHHHhcCCCHHHHHHH
Confidence 444468877777754222 5688999999999999999998777754
No 12
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.80 E-value=1.2e-06 Score=100.64 Aligned_cols=178 Identities=25% Similarity=0.322 Sum_probs=116.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhhcc-cccccChHh-hhhhccCChHHHHHHHHHHHhHHHHhhhcChhh
Q 004552 554 LGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVAT-ISYELSEAE-YADNEVNDPWVQRLLHAVETNAAWLQPLMTANN 631 (745)
Q Consensus 554 l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~-~~y~l~e~e-y~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n 631 (745)
|.++...|..+.+...+.++..+..-++..+..|.+ ..|...++. -.....-.|.....+..+...+..++..|.+..
T Consensus 300 Fde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~ 379 (494)
T PF04437_consen 300 FDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPAD 379 (494)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 445667777777777777777766666666666655 444332211 001111123446677888888999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhccccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHhcCCChhh--hhhh
Q 004552 632 YDSFVHLIIDFIVKRL-EVIMMQKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSE--ILDF 708 (745)
Q Consensus 632 ~~~ll~~~~~~l~~~l-E~~i~~~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~lL~~e~~~e--~~d~ 708 (745)
|..+-..++..+..+| +.+++..+||+.||.||..|++.+.+.+..++. .....|.||.+.+.||+++.... +.+.
T Consensus 380 f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~-~p~~~f~~l~E~~~LL~L~~~~~~~~~~~ 458 (494)
T PF04437_consen 380 FRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTP-RPEAFFKRLREACKLLNLPYGSAKLLKEF 458 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTS-GG-HHHHHHHHHHHHHGGGG-CGG--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHcCCCCcchhhhHHH
Confidence 9999999999999986 557788999999999999999999998887544 34689999999999999985531 1111
Q ss_pred h------cCCC------CCcccccCHHHHHHHHhccc
Q 004552 709 W------GENS------GPMTWRLTPAEVRRVLGLRV 733 (745)
Q Consensus 709 ~------~~~~------~~~~w~Ls~~E~~~il~lR~ 733 (745)
. ++.. -|+ -.||+.|++.||.+||
T Consensus 459 l~~~~~~~~~~~~~l~~lgI-~~Ls~~ea~~vL~rRV 494 (494)
T PF04437_consen 459 LSKSYIKNENARKLLEELGI-SHLSPSEARDVLYRRV 494 (494)
T ss_dssp TSHHHHHHT--SHHHHHTT--SSS-HHHHHHHHHHHH
T ss_pred HhhhhccchHHHHHHHHCCC-CcCCHHHHHHHHHccC
Confidence 1 0100 012 3699999999999996
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.63 E-value=3.7e-05 Score=82.07 Aligned_cols=242 Identities=13% Similarity=0.174 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 40 TDVGAMTRLLHECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
.+.+++.+...+|......++..|...|.+++ ..-..+.+++.+...+..+......+.+.+..+.+.-..-+=+|-++
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~ 107 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRL 107 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 67788999999999999999999999999988 56677777777666888888888888887776655544556778899
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC--CCCccHHHHHHHHHHHHHHHHHHH
Q 004552 119 DLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK--DSGSDQREQLLTAKKQLEGIVKKR 196 (745)
Q Consensus 119 D~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~--~~~~~~~~~L~~~~~~L~~~~~~~ 196 (745)
..-|.++.+.++.++.|..+..+-..++..+..+||.+|-..|....++.+++. ....+....|+++.+.+.+.+...
T Consensus 108 ~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~ 187 (291)
T PF10475_consen 108 QRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSD 187 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877665 234457788999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-hcc------------CCcccH
Q 004552 197 VLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQ-SQD------------QNQVNF 263 (745)
Q Consensus 197 F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~-~~~------------~~~~~~ 263 (745)
|.+.+..=|++.=...+.=|.++|....-.+....+..+.|...+.+-+........+ +.. -++-.|
T Consensus 188 l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~~~~~y~~lC~~v~~~~~ 267 (291)
T PF10475_consen 188 LSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERSSKMSYKDLCKQVPSDQF 267 (291)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCHHHHHhhCCHHHH
Confidence 9999999999988888888999998877777777777777777777766654332111 011 123356
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004552 264 VGCLTNLFKDIVLAIEEN 281 (745)
Q Consensus 264 ~~~L~~Lfe~ia~ii~~h 281 (745)
.++|..+++.+-.+.-.|
T Consensus 268 ~~cl~~l~~~l~~im~sy 285 (291)
T PF10475_consen 268 IPCLLELLEVLWDIMCSY 285 (291)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777666665554
No 14
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=98.52 E-value=8.4e-06 Score=87.52 Aligned_cols=270 Identities=16% Similarity=0.188 Sum_probs=150.4
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHhc--c-C--CHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCccchhhhcCCCccc
Q 004552 430 YVPDSLTTSMVDDVFYVLQSCLRRAIS--T-S--NISSVIAVLSSASS-LLSNEYQEALQQKTREPNLGAKLFLGGVGVQ 503 (745)
Q Consensus 430 ~~~~~~~SS~vDDvf~il~k~l~Rals--t-g--~~~~~~a~ln~~~~-~L~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 503 (745)
.|-.-+.|++|=.+...+|+-+..++. . . +...+..++....+ +|...+.+.|+.+++.+ ....
T Consensus 24 fP~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~-~~l~--------- 93 (311)
T PF04091_consen 24 FPKKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSS-LNLS--------- 93 (311)
T ss_dssp ----SSSBTHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-S-HH---------
T ss_pred CCeeCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHH---------
Confidence 345568999999999999999999955 2 2 33444555554443 44555666788887653 1000
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhh
Q 004552 504 KTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPV 583 (745)
Q Consensus 504 ~~~~~~~~~LNn~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~ 583 (745)
.-..+++-+.=.+.++.+++++...+..... .+..+ ..+ .-.+.|++..+.+-+.++..+..||..+
T Consensus 94 -qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~--~~~~~------~~l----~a~~~f~~~r~~Ae~~I~~lv~~KIDe~ 160 (311)
T PF04091_consen 94 -QIVQIVINLEYLEKACKELEEFLSSLRGIPQ--SAGGH------IRL----KATKMFKDARKAAEKRIFELVNSKIDEF 160 (311)
T ss_dssp -HHHHHHHHHHHHHTTHHHHHHHHHHHHT----------------------------S---TTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHHHcCCCc--cchHh------Hhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0222333333344788888887666641110 11100 011 1235677777778888888899999988
Q ss_pred hhhhcccccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhc---cccccch
Q 004552 584 LDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQ---KKFSQLG 660 (745)
Q Consensus 584 l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i~~---~~fn~lG 660 (745)
+ .+...||.+++ ..+.-+.++..++..++..+...-..|.+.....++..++.+++..|-..+.. +++|.-|
T Consensus 161 l-ela~yDW~~~~----~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~a 235 (311)
T PF04091_consen 161 L-ELAEYDWTPTE----PPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNA 235 (311)
T ss_dssp H-TT--TT------------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TT
T ss_pred H-hhcccceecCC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 8 55666776654 22334569999999999999887778888888888889999999999998753 8999999
Q ss_pred hhHHhHHHHHHHHHHhhc-----CcchhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHH
Q 004552 661 GLQLDRDTRASVSHFSSM-----TQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVL 729 (745)
Q Consensus 661 al~ldkDvr~lis~l~~~-----~~~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il 729 (745)
-.+|+.||+.+-++..+. +...+++.|.-|.|.+.||-.+++++..|+-.. ... --+++|..+..+|
T Consensus 236 l~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r-~~k-Y~~v~p~~~~~lL 307 (311)
T PF04091_consen 236 LQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIR-ERK-YSRVKPEKAIKLL 307 (311)
T ss_dssp HHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCcccc-ccc-cCCCCHHHHHHHH
Confidence 999999999999999988 556899999999999999999998876444211 111 1246666665554
No 15
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.25 E-value=0.022 Score=67.10 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHh-Hhh-hhhhHHHHhHHHH
Q 004552 40 TDVGAMTRLLHECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSN-VRS-TSDLADQVSRKVR 116 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~-i~~-~~~~A~~is~kVr 116 (745)
-+.++++..+.+|..+..++..++...+.... +....+...+.+..+...+..+.+.+.+. +.+ +-..-.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 35678888888888899999888888888776 44444444344333444444444333332 211 1122234457778
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccCCC-C--cc----HHHHHHHHHHHH
Q 004552 117 ELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDS-G--SD----QREQLLTAKKQL 189 (745)
Q Consensus 117 ~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~-~--~~----~~~~L~~~~~~L 189 (745)
.|-.+-......+..++++..+...+..++.+++.++|..||..+.++...-.....+ . .. ....+..-++.|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999999999999999997755554311 1 12 345566677888
Q ss_pred HHHHHHHHHHHHHcC----------------------Chh--HHHHHHHhcccCCcchhhHHHHHHHHHHHHH
Q 004552 190 EGIVKKRVLAAVDQR----------------------DHG--TILRFIKLYSPLGIEEEGLQVYVGYLKKVIG 238 (745)
Q Consensus 190 ~~~~~~~F~~A~~~~----------------------D~~--~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~ 238 (745)
...+.+.|++++.-. +.. .+.....=+-.+|.-+.++..+++++-++|-
T Consensus 167 ~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii 239 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHII 239 (593)
T ss_pred HHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 888888888777521 112 2667777777788888999999888887653
No 16
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.048 Score=59.50 Aligned_cols=410 Identities=13% Similarity=0.202 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhh-hhhHHHHhHH
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRT--------DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRST-SDLADQVSRK 114 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~--------~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~-~~~A~~is~k 114 (745)
...+.+-.+....+--..++...+.+++ ...++...|+. ....++++...+...+..+ ++.|+-| .-
T Consensus 35 a~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~---Da~~Lq~kma~il~el~~aegesadCi-Aa 110 (828)
T KOG4182|consen 35 AAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQA---DAHRLQEKMAAILLELAAAEGESADCI-AA 110 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhCChHHHH-HH
Confidence 3444444444444444444445555554 12233333333 3334444443333333222 2334444 45
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccc---cccCCCCccHHHHHHHHHHHHHH
Q 004552 115 VRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEID---NKYKDSGSDQREQLLTAKKQLEG 191 (745)
Q Consensus 115 Vr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~---~~~~~~~~~~~~~L~~~~~~L~~ 191 (745)
+.+||..++|++.+.+-+++---+-+-...+..-..++|...||.-+..+..-. ++++. -.+.+..|+.+.++|+.
T Consensus 111 LaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~~elae-fAe~qkQlE~~edRLEA 189 (828)
T KOG4182|consen 111 LARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHAQEELAE-FAERQKQLEDFEDRLEA 189 (828)
T ss_pred HHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998776664311 11111 11467889999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHH-HHHHHHHhHHH------------HHHhhhhhc--
Q 004552 192 IVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKV-IGMRWRMEYDN------------LVELMEQSQ-- 256 (745)
Q Consensus 192 ~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~-i~~~ar~~l~~------------~~~~~~~~~-- 256 (745)
...-+..+|...|..+....|-.+|--||+= .-|+.|-+-|... |...-. .+.. ....+.+++
T Consensus 190 laqPrltda~a~~ktd~AQd~r~I~irIgRf-kqLelqY~~Vq~k~ikQlWe-dfd~kQ~anklanersesqrlssgdEf 267 (828)
T KOG4182|consen 190 LAQPRLTDAFAEGKTDQAQDFRQIFIRIGRF-KQLELQYRAVQKKFIKQLWE-DFDEKQGANKLANERSESQRLSSGDEF 267 (828)
T ss_pred HcCchHHHHHHccChHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHH-HHHHhcchhhhhcchhhhhcccccccc
Confidence 9999999999999999999999999999984 3444443333322 221111 1111 001111111
Q ss_pred --cCCcccHHHHHHHHHHHHHHHHHHhHHHHHhhhCcccHH-------HHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHH
Q 004552 257 --DQNQVNFVGCLTNLFKDIVLAIEENDEILRGLCGEDGIV-------YAICELQEECDSRGCLILKKYM-EYRKLGKLS 326 (745)
Q Consensus 257 --~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~~yg~~~m~-------~vi~~lq~e~d~q~~~Il~~f~-~~R~l~~~~ 326 (745)
+++.+.|++-||..|+.+-.-.+++.+---..||.++|. ..|.-|+.--|.+....+..-. +...+.+.+
T Consensus 268 Qstssq~qfaq~LT~fYDeLL~~~eqe~KWCm~aF~ddym~l~~kliaE~lgaLgasf~a~i~la~gda~~e~eaLAk~a 347 (828)
T KOG4182|consen 268 QSTSSQPQFAQFLTLFYDELLEHCEQEVKWCMNAFGDDYMPLPFKLIAELLGALGASFDAHILLALGDANEELEALAKFA 347 (828)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHhhhchhHHHHHHHHhccccHHHHHHHHHH
Confidence 245689999999999988888888888777789988754 2333344444444444443222 223444444
Q ss_pred HHHhhhccccccCCCCCCCC--hhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCCCchhhhhhcccCchHHH---
Q 004552 327 AEINTQNKNLLNVGVSEGPD--PREVELYLEEILSLMQLGEDYTEFMVSKIKSLSSVDPALVPRATKAFRSGSFSKV--- 401 (745)
Q Consensus 327 ~~i~~~~~~~~~~~~~~~~d--~~~~d~ll~Eis~il~~~~lY~rFi~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~--- 401 (745)
++..+-. -+-+++ .+.++.++ |...|- -.|.|-|+.-..+. .. . .+...
T Consensus 348 ~dl~Sgd-------lpkgini~tkHLeaLi-Elh~iT---gsfarniqhlfaEe------e~-R--------iL~dtleA 401 (828)
T KOG4182|consen 348 KDLHSGD-------LPKGINIFTKHLEALI-ELHHIT---GSFARNIQHLFAEE------EH-R--------ILGDTLEA 401 (828)
T ss_pred HHhccCc-------CccchhHHHHHHHHHH-HHhhcc---hhhhhhHHHHhhHH------HH-H--------HHHHHHHH
Confidence 4443311 112222 12333333 222222 23333332211100 00 0 01111
Q ss_pred ----HHHHhhhHHhHHHHHHHHHHHHHHhhccCC-----CCCCcc-------hhhHHHHHHHHHHHHHHhc-cCCHHHHH
Q 004552 402 ----VQEITGFYVILEGFFMVENVRKAIRIDEYV-----PDSLTT-------SMVDDVFYVLQSCLRRAIS-TSNISSVI 464 (745)
Q Consensus 402 ----~qel~~~Yi~Le~~~l~~Sv~KAi~~de~~-----~~~~~S-------S~vDDvf~il~k~l~Rals-tg~~~~~~ 464 (745)
+..++..|=.||+.-+...|...--...+- .|.-.| ...-.+.-++.....||++ ||. ..+|
T Consensus 402 ifepFekF~QkYgklE~aiLSseia~ldlrgavtrgvgang~elSd~VR~lEESipklv~lLeaA~ERC~gfTg~-~~a~ 480 (828)
T KOG4182|consen 402 IFEPFEKFIQKYGKLEEAILSSEIARLDLRGAVTRGVGANGAELSDGVRHLEESIPKLVELLEAACERCAGFTGD-LAAC 480 (828)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhhHHHHHHHHHHHHHhhcccCc-HHHH
Confidence 112222333333333332222211111111 111112 1223677899999999998 664 3678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 004552 465 AVLSSASSLLSNEYQEALQQKTRE 488 (745)
Q Consensus 465 a~ln~~~~~L~~~~~~~l~~~l~~ 488 (745)
.+|-.+..++- .|++.+..-++.
T Consensus 481 eLIlaLddI~~-q~iem~~e~lkq 503 (828)
T KOG4182|consen 481 ELILALDDIFK-QQIEMFGEILKQ 503 (828)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88888888776 777777766665
No 17
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.096 Score=60.69 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhCchhhhhhhcccccccChHhhhhhccCCh---HHHHHHHHHHHhHHHHhhhcChhhHHHH
Q 004552 559 KMFKQILNMGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDP---WVQRLLHAVETNAAWLQPLMTANNYDSF 635 (745)
Q Consensus 559 ~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~~~y~l~e~ey~~~e~~d~---~~~~f~~~~~~l~~~~~~~Lt~~n~~~l 635 (745)
+....+-...+..++-.+...+++.+..+++++|...+.. ....+-. -+..++..++..+..+...|+|.-|..+
T Consensus 553 ~~leel~~~~~~~~iv~~l~~~~~~~r~y~k~~w~s~~~~--~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~ 630 (737)
T KOG2218|consen 553 NFLEELMSTWMLKLIVHLLQNLKDLLRNYKKNKWVSLEES--ENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAI 630 (737)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHhhhhcchhcccch--hhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHH
Confidence 3444444445555555555566788888888877655543 1111221 2234555566666677889999999999
Q ss_pred HHH-HHHHHHHHHHHHHhc-cccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHhcCCChhhhh-hh----
Q 004552 636 VHL-IIDFIVKRLEVIMMQ-KKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEIL-DF---- 708 (745)
Q Consensus 636 l~~-~~~~l~~~lE~~i~~-~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~lL~~e~~~e~~-d~---- 708 (745)
-.. ..+..+..++..|++ .+|+.=|+.++.-|.+.+.+.|+.+.-. --.+|.+|..++.||+++.++-.. +-
T Consensus 631 ~~~l~~~idv~~~~e~il~~~~f~~~~~~~f~~Da~~L~~~fs~yc~r-p~~~f~~l~e~~~vL~l~e~~~~l~~~Ls~~ 709 (737)
T KOG2218|consen 631 WRNLQENIDVYVFEEIILKNHKFESSGLFQFVHDAKRLLEVFSEYCVR-PLLKFKSLRELVCVLKLEEGELRLKDALSRP 709 (737)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhcccccc-hhHHHHHHHhhhhhhhhcccHhhhhhhhccc
Confidence 854 466667777777766 7889999999999999999999865221 127999999999999999774111 11
Q ss_pred ---hcCCCCCcccccCHHHHHHHHhcccCC
Q 004552 709 ---WGENSGPMTWRLTPAEVRRVLGLRVDF 735 (745)
Q Consensus 709 ---~~~~~~~~~w~Ls~~E~~~il~lR~Df 735 (745)
|-+..| .-.|++++++.++.+|++.
T Consensus 710 ~~~~le~~~--i~~Ls~~di~~~l~~rv~~ 737 (737)
T KOG2218|consen 710 GTKCLEELG--IKYLSDQDIEDVLYRRVYG 737 (737)
T ss_pred HHHHHHHhh--hhhcCHHHHHHHHHHHhcC
Confidence 111111 2369999999999999873
No 18
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.046 Score=61.57 Aligned_cols=272 Identities=17% Similarity=0.200 Sum_probs=159.8
Q ss_pred CcchhhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhcCCCccccchhHHHHHhh
Q 004552 435 LTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSSASSLLSNEYQEALQQKTREPNLGAKLFLGGVGVQKTGTEIATALN 514 (745)
Q Consensus 435 ~~SS~vDDvf~il~k~l~Ralstg~~~~~~a~ln~~~~~L~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LN 514 (745)
.+|..+-+.+-++++.+.-+..+..-.+...+.+.+..++. -|....=++.++ +++ +. .-...+.=|
T Consensus 435 ~vSeSa~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~h-ly~~vVP~khre------ll~-si-----Pq~AaifhN 501 (719)
T KOG2163|consen 435 TVSESAINFVNLLRDTLKAATASSDDQAAAKLALTARNIVH-LYVIVVPRKHRE------LLS-SI-----PQMAAIFHN 501 (719)
T ss_pred eecHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH-HHHHHhhHHHHH------HHH-hc-----chHHHHHhc
Confidence 36888889999999999988777656677777777776665 665543333321 000 00 001223334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhhccccccc
Q 004552 515 NMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSVATISYEL 594 (745)
Q Consensus 515 n~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~~~~~y~l 594 (745)
|--+..+.+-.- .|.+.. .|.++...|+.+...+++.=+...+.-++..|+....-.+..
T Consensus 502 NCmyi~h~~~~h----------~f~g~~----------~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~ 561 (719)
T KOG2163|consen 502 NCMYISHCIMTH----------SFLGEP----------LLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLP 561 (719)
T ss_pred ccHHHHHHHHhh----------hcccch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 433333322111 121111 144556777777666664433444444444443333223333
Q ss_pred ChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHH-HHHHHHHHHHHHhccccccchhhHHh-------H
Q 004552 595 SEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLI-IDFIVKRLEVIMMQKKFSQLGGLQLD-------R 666 (745)
Q Consensus 595 ~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~-~~~l~~~lE~~i~~~~fn~lGal~ld-------k 666 (745)
+++.| +.-+--+.+++..++.+-..+++.|.+..|..-+..+ -..+...+-+.+.-.-++.=-|-.|- +
T Consensus 562 ~ee~~---ssa~klVrQcL~qLkll~~vw~~vLpe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~ 638 (719)
T KOG2163|consen 562 AEEMS---SSADKLVRQCLLQLKLLAKVWREVLPEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLE 638 (719)
T ss_pred HHhhc---ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHH
Confidence 33333 2234467899999999999999999999998766544 44444444443332233222222211 1
Q ss_pred HHHHHHHHHhhc--CcchhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHHHHHH---hcccCCChhHHh
Q 004552 667 DTRASVSHFSSM--TQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVL---GLRVDFKPEAIA 741 (745)
Q Consensus 667 Dvr~lis~l~~~--~~~~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~~~il---~lR~Df~~~~i~ 741 (745)
.+..+..+..+. +...+|+. -++.|+..+|+.. .+++.+.|.++.||....+|..|++... -.=.||+.++|.
T Consensus 639 ~~p~vfa~~~e~~et~v~v~~w-~pl~el~~mL~as-LmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRadaia 716 (719)
T KOG2163|consen 639 VVPNVFAYKEETKETDVCVREW-FPLNELVFMLGAS-LMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRADAIA 716 (719)
T ss_pred hhhhhhcChhhccCccccHHHh-ccHHHHHHHhCch-HhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHHHHHh
Confidence 222333333321 22234544 4899999999998 9999999999999999999999998654 345778888887
Q ss_pred ccC
Q 004552 742 LLK 744 (745)
Q Consensus 742 ~l~ 744 (745)
+++
T Consensus 717 ~i~ 719 (719)
T KOG2163|consen 717 RIQ 719 (719)
T ss_pred hcC
Confidence 764
No 19
>PF15469 Sec5: Exocyst complex component Sec5
Probab=95.43 E-value=0.61 Score=46.13 Aligned_cols=126 Identities=11% Similarity=0.158 Sum_probs=89.3
Q ss_pred HHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccCC
Q 004552 94 SDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKD 173 (745)
Q Consensus 94 ~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~ 173 (745)
..+|...+.++...|..+.+-|-.--....++..|+.+++...-|=+--..+..+++.+||+.+...-.|+.++......
T Consensus 42 ~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~ 121 (182)
T PF15469_consen 42 TEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQ 121 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888888888888777778888889999998888888889999999999999999999999988876531
Q ss_pred -C--CccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCc
Q 004552 174 -S--GSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGI 221 (745)
Q Consensus 174 -~--~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~ 221 (745)
. -......+++..++++..+.+++.+.- .+.+...+++..+-.+|.
T Consensus 122 ~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~ 170 (182)
T PF15469_consen 122 QVPVFQKVWSEVEKIIEEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNV 170 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCC
Confidence 1 011334444444444444444444322 455555555555555554
No 20
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=13 Score=42.29 Aligned_cols=190 Identities=15% Similarity=0.213 Sum_probs=124.2
Q ss_pred ccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHH----HHhhhhhHHhHHHhHHHH
Q 004552 26 KFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRT----DLDKHLLQ----LQKSAEVLDIVKADSDHM 97 (745)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~----~~~~~l~~----L~~~~~~l~~~~~~~~~l 97 (745)
+|.-..++...+.-.++.+++. .|....+++.+.+-.++.+-. .++.+|.. |+++..-|..++++..+.
T Consensus 32 dFdve~f~s~~R~~v~letLrd---dLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~ 108 (705)
T KOG2307|consen 32 DFDVERFMSLARQKVDLETLRD---DLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKST 108 (705)
T ss_pred cCCHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 5666777778888888888888 899999999999999998766 45566643 444444566666666666
Q ss_pred HHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhh---hhHHHHHHhhcc----c------cHHHHHHHHHHH
Q 004552 98 LSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRN---NCLDGVKTALDE----E------NFEAAAKFVQRF 164 (745)
Q Consensus 98 ~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk---~~~~~v~~al~~----~------d~e~AA~~i~r~ 164 (745)
.+.|++ -++.++...+...+.-+.-.-++++. ..++.++..|.+ + +.|.+|.-+.++
T Consensus 109 rgsV~e----------a~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnql 178 (705)
T KOG2307|consen 109 RGSVGE----------AERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQL 178 (705)
T ss_pred HhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 665543 34444433333333333333333333 355666666642 2 456666666666
Q ss_pred HccccccC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHH
Q 004552 165 VEIDNKYK-DSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVY 229 (745)
Q Consensus 165 l~i~~~~~-~~~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y 229 (745)
..-..+.. .--|+....+......|.+.+..-|.++.+. |...+.+|.+++..|+..+..=..+
T Consensus 179 kf~a~h~k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqs-a~~~l~nclriYatld~t~~ae~lf 243 (705)
T KOG2307|consen 179 KFHASHLKGSLFPHSEERIAAEKIILSQSLAVLFAEGLQS-AAGDLQNCLRIYATLDLTESAESLF 243 (705)
T ss_pred HHHHHHhhcccCcchhhHHhhHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHhhchhHHHHH
Confidence 44333322 1234455667778888888888889999965 9999999999999998765443333
No 21
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=92.92 E-value=17 Score=39.76 Aligned_cols=131 Identities=12% Similarity=0.144 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHH
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLD-KHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELD 119 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~-~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD 119 (745)
+++++.+.-..|..+.++++.++..+..+..+.= ..-..+..+...+..+.+....+...+.+..+.+...+.+.+.+-
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~ 87 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKIS 87 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777888888888887766665211 111112222223444444444444444444444445555555555
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHcccccc
Q 004552 120 LAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKY 171 (745)
Q Consensus 120 ~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~ 171 (745)
..|+....++...+++.++=.--.-+..++..+.|++|=....-+..+...+
T Consensus 88 ~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~ 139 (338)
T PF04124_consen 88 EERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRF 139 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhc
Confidence 5577777777777766666666677778999999999755444444444444
No 22
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=7.9 Score=46.32 Aligned_cols=152 Identities=17% Similarity=0.233 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHH
Q 004552 51 ECIAYQRALDVDLDSLLSQRTD-LDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTL 129 (745)
Q Consensus 51 ~l~~~~~~~~~~L~~~~~~~~~-~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~ 129 (745)
+|.....-++-.|.+-++.+++ .=..+.+++.+...+....+...+|...+..+...-.+=+.+|-++...+.++.+.+
T Consensus 247 kLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~ 326 (951)
T KOG2115|consen 247 KLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLL 326 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6666666677777766666662 223444555555578888888888888888888888888999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC-CC---CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004552 130 LRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK-DS---GSDQREQLLTAKKQLEGIVKKRVLAAVD 202 (745)
Q Consensus 130 ~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~-~~---~~~~~~~L~~~~~~L~~~~~~~F~~A~~ 202 (745)
+.+..+....+.-..|+..+..+||.+|-..|..+..+-++.. .+ ..+.+..+.......-..+.++|.....
T Consensus 327 ~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~~ 403 (951)
T KOG2115|consen 327 QKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYSK 403 (951)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987666311 11 1235556666666677788888886664
No 23
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=92.72 E-value=4.2 Score=38.52 Aligned_cols=106 Identities=8% Similarity=0.157 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 40 TDVGAMTRLLHECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
||+ +....+..+......++..|...|.+.. ..++.+...+.+...++..+....++-+.+..+...=..=+..++.|
T Consensus 34 ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L 112 (142)
T PF04048_consen 34 SSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKEL 112 (142)
T ss_pred CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 444 4777888999999999999999999988 78888888888888888888888888888877665555666788999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 004552 119 DLAQSRVNDTLLRIDAIVDRNNCLDGVK 146 (745)
Q Consensus 119 D~~~~rv~~t~~~V~~v~~Lk~~~~~v~ 146 (745)
-.......+.++.+++|-.++..-+.|.
T Consensus 113 ~~~s~~~~~mi~iL~~Ie~l~~vP~kie 140 (142)
T PF04048_consen 113 WQRSQEYKEMIEILDQIEELRQVPDKIE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999998888887776664
No 24
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=28 Score=41.41 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhCchhhhhhhcccccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHHH
Q 004552 567 MGMEQLVATVTPRIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKR 646 (745)
Q Consensus 567 ~~i~~L~~~i~~rl~~~l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~ 646 (745)
.+-..+...++.+|...+... ..+|..+| .-...+.+....+..+...+....+.|-...-...+--..++|+..
T Consensus 595 ~Ae~~l~~~i~~Kid~f~~l~-~~dW~t~e----~pq~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~ 669 (800)
T KOG2176|consen 595 LAETELIELIKLKIDDFLELI-EYDWTTTE----VPQGPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTS 669 (800)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-hccccccc----cCCCccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Confidence 344445577788888777666 55564443 1223345888888899998888888887776666666667777777
Q ss_pred HHHHHhc---cccccchhhHHhHHHHHHHHHHhhcC-----cchhhhHHHHHHHHHHHhcCCChhhhh-hhhcCCCCCcc
Q 004552 647 LEVIMMQ---KKFSQLGGLQLDRDTRASVSHFSSMT-----QRTVRDKFARLTQMATILNLEKVSEIL-DFWGENSGPMT 717 (745)
Q Consensus 647 lE~~i~~---~~fn~lGal~ldkDvr~lis~l~~~~-----~~~lRekF~rL~QI~~lL~~e~~~e~~-d~~~~~~~~~~ 717 (745)
+=..+.. ++++.-...+|+-||..+=+|..+-+ ....++.|..+.|+..||-.++++... +|-... .+
T Consensus 670 iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~~~~~~~~~~~~fielrQlinLL~~~~~e~y~~~~~r~r--sY- 746 (800)
T KOG2176|consen 670 IVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPVPPNQEGVLAKAFIELRQLINLLLLSDWETYLNDYGRER--SY- 746 (800)
T ss_pred HHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCCCCcccchhHHHHHHHHHHHHHHHhcCHHHhhCchhhhh--hh-
Confidence 7665554 67888888899999999988887721 136789999999999999999988543 332221 12
Q ss_pred cccCHHHHHHHHhcccC
Q 004552 718 WRLTPAEVRRVLGLRVD 734 (745)
Q Consensus 718 w~Ls~~E~~~il~lR~D 734 (745)
-++.|+.+..++..=.|
T Consensus 747 ~rl~~~~a~t~lEK~~d 763 (800)
T KOG2176|consen 747 NRLQPAKAATLLEKFKD 763 (800)
T ss_pred hccCHHHHHHHHHHHhc
Confidence 36888888887764333
No 25
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=5.9 Score=44.22 Aligned_cols=195 Identities=12% Similarity=0.125 Sum_probs=126.5
Q ss_pred ccccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHhhhhhHHhHHHhHHHHHHh
Q 004552 24 AVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL---LQLQKSAEVLDIVKADSDHMLSN 100 (745)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l---~~L~~~~~~l~~~~~~~~~l~~~ 100 (745)
.-+|-...|+..+....++.++-+.-.+...+...+|..+..+|=+.. ++-+ ..+.++-.++..+.+++.+++..
T Consensus 30 gahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENY--NKFisATdTirkmk~~f~~me~eMd~L~~~ 107 (636)
T KOG2346|consen 30 GAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENY--NKFISATDTIRKMKSNFFGMEQEMDGLEEV 107 (636)
T ss_pred CCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhc--chhhhcchHHHHHHhhhhhhcchhhhHHHH
Confidence 457889999999999999999999888889999999999999887655 2222 23444444777888888888887
Q ss_pred HhhhhhhHHHHhH-------HHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccCC
Q 004552 101 VRSTSDLADQVSR-------KVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKD 173 (745)
Q Consensus 101 i~~~~~~A~~is~-------kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~ 173 (745)
++.+.....++++ .|++|-.-+.++..-...-+ --..+....+.+.|..|-..-.++...++.+..
T Consensus 108 ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifd-------LP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~ 180 (636)
T KOG2346|consen 108 MSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFD-------LPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDG 180 (636)
T ss_pred HHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhh-------hHHHHHHhccccccchhhccccccccchhhcCC
Confidence 7766555444443 45555554444444333333 334455666778888888777777777766652
Q ss_pred CCc--cHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHH
Q 004552 174 SGS--DQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVY 229 (745)
Q Consensus 174 ~~~--~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y 229 (745)
.++ +-.+.=++++..+.+.+..+|-+-. .-......+..+.-.+|.+.+|+...
T Consensus 181 ~psfq~~~~~seei~~rl~~qL~~rlr~~~--sga~~raEAv~LLl~lg~p~del~~~ 236 (636)
T KOG2346|consen 181 RPSFQEDDVPSEEIRLRLVAQLGTKLRSDS--SGAQARAEAVVLLLQLGVPVDELKAK 236 (636)
T ss_pred CCcHHHhccchHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHhcCCChHHHHHH
Confidence 111 1111122344555555555554322 22345667788889999988887665
No 26
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.71 E-value=14 Score=37.01 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
.+++.....|......++.-...+++.+.++...+.++......|..... .|...++..+...++.+...+.+-...
T Consensus 17 ~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~---~L~~~L~~~~~~~~~~~~~~~~l~~~~ 93 (200)
T cd07624 17 DKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASET---ELAPLLEGVSSAVERCTAALEVLLSDH 93 (200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888888888888888888788776666655544 355555555544444444433332221
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHc
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVE 166 (745)
Q Consensus 123 ~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~ 166 (745)
...+++-+.+.-..+.-|..+|+. .+|+.+..++.+-..
T Consensus 94 -----~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~ 137 (200)
T cd07624 94 -----EFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRL 137 (200)
T ss_pred -----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888874 579999888888764
No 27
>PF14923 CCDC142: Coiled-coil protein 142
Probab=89.71 E-value=26 Score=39.43 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHHHHHHHH-HHhHHHHhhhcChhhHHHHHHHH-HHHHHHHHHHHHhc-cccccchhhHHhHHHHHHHHHHhhc-Cc--c
Q 004552 608 WVQRLLHAV-ETNAAWLQPLMTANNYDSFVHLI-IDFIVKRLEVIMMQ-KKFSQLGGLQLDRDTRASVSHFSSM-TQ--R 681 (745)
Q Consensus 608 ~~~~f~~~~-~~l~~~~~~~Lt~~n~~~ll~~~-~~~l~~~lE~~i~~-~~fn~lGal~ldkDvr~lis~l~~~-~~--~ 681 (745)
|+..++..+ .-+++.. +.|.+.+--..+..+ ...+-..+++++++ -||+.-||+||.+|.-.+...+.+- .. .
T Consensus 277 Yv~~~v~~vl~PVl~g~-q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~e~~~Ls~ 355 (450)
T PF14923_consen 277 YVEYVVETVLEPVLQGV-QGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLESECSGLSP 355 (450)
T ss_pred HHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHhhhccCCH
Confidence 444444332 2233333 345666555555555 55555677776665 5999999999999999999999882 22 3
Q ss_pred hhh------hHHHHHHHHHHHhcC
Q 004552 682 TVR------DKFARLTQMATILNL 699 (745)
Q Consensus 682 ~lR------ekF~rL~QI~~lL~~ 699 (745)
.+| +-|-++.-.+.+|--
T Consensus 356 e~rq~Ll~l~v~r~~dgv~~lLlq 379 (450)
T PF14923_consen 356 ELRQTLLSLEVFRRCDGVGLLLLQ 379 (450)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhc
Confidence 566 556667666666643
No 28
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=89.23 E-value=8.7 Score=35.85 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHH---HHHH----HHhhhhhHHhHHHhHHHHHHhHhhhhhhHHH
Q 004552 39 LTDVGAMTRLLHECIAYQRALDVDLDSLLSQRT-DLDK---HLLQ----LQKSAEVLDIVKADSDHMLSNVRSTSDLADQ 110 (745)
Q Consensus 39 l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~~~~---~l~~----L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~ 110 (745)
-.+..++...+++|....++++++|.+.+.... ++-. .+.+ ++.+.+.+..+...++.+...|.+=.
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py----- 99 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPY----- 99 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----
Confidence 446778888999999999999999999999888 4332 2222 33344555566666666665555544
Q ss_pred HhHHHHhHHHHHhHHHHHHHHHH
Q 004552 111 VSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 111 is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
.+++.+-..-+|+.+|.+.+.
T Consensus 100 --~~~~~~~~~L~rl~~t~~LLR 120 (132)
T PF10392_consen 100 --EKIQKLTSQLERLHQTSDLLR 120 (132)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555
No 29
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=88.05 E-value=67 Score=38.46 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=62.6
Q ss_pred hHHHHHHHhhhHHhHHHHHHHHHHHHHHhhccCC----CCCCcchhhHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHH
Q 004552 398 FSKVVQEITGFYVILEGFFMVENVRKAIRIDEYV----PDSLTTSMVDDVFYVLQSCLRRAIST---SNISSVIAVLSSA 470 (745)
Q Consensus 398 l~~~~qel~~~Yi~Le~~~l~~Sv~KAi~~de~~----~~~~~SS~vDDvf~il~k~l~Ralst---g~~~~~~a~ln~~ 470 (745)
....+..++-..+.-...-+.+=|.+|++.|... +..+.+|+| |||-++++.+.--+.- -..+.+.++..-+
T Consensus 513 vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~SvV-Evfri~~eTvd~ff~L~~~~~~~~l~~L~~gl 591 (677)
T PF05664_consen 513 VESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSVV-EVFRIFNETVDQFFQLPWPMHADFLQALSKGL 591 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchHH-HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 4455556666666667777888999999998653 233666777 9999999999988652 2555677777777
Q ss_pred HHHHHHHHHHHHHHhc
Q 004552 471 SSLLSNEYQEALQQKT 486 (745)
Q Consensus 471 ~~~L~~~~~~~l~~~l 486 (745)
..+|+ .|+..+...+
T Consensus 592 d~~lq-~Y~~~v~~~~ 606 (677)
T PF05664_consen 592 DKALQ-RYCEKVEQSC 606 (677)
T ss_pred HHHHH-HHHHHHHHhc
Confidence 77887 7888764444
No 30
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=83.04 E-value=61 Score=33.46 Aligned_cols=127 Identities=14% Similarity=0.181 Sum_probs=80.7
Q ss_pred CchhhhhhhcccccccChHhhhhhccCChHHHHHHHHHHHhHHHH-----hhhcChhhHHHHHHHHHHHHHHH-HHHHHh
Q 004552 579 RIRPVLDSVATISYELSEAEYADNEVNDPWVQRLLHAVETNAAWL-----QPLMTANNYDSFVHLIIDFIVKR-LEVIMM 652 (745)
Q Consensus 579 rl~~~l~~~~~~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~-----~~~Lt~~n~~~ll~~~~~~l~~~-lE~~i~ 652 (745)
.+..+++....+.|+++| -.....+|+..++..+..+-..+ ...+++...+.|...++..+... +|..-.
T Consensus 68 ~~~~i~~~Ia~vKWdvke----v~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~ 143 (234)
T PF10474_consen 68 DLEQILNSIANVKWDVKE----VMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSR 143 (234)
T ss_pred CHHHHHHHHHHcCCCCCC----CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666777788898876 23445678888887777765555 23345565555655555554443 344434
Q ss_pred ccccccchhhHHhHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHhcCCChhhhhhhhc
Q 004552 653 QKKFSQLGGLQLDRDTRASVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWG 710 (745)
Q Consensus 653 ~~~fn~lGal~ldkDvr~lis~l~~~~~~~lRekF~rL~QI~~lL~~e~~~e~~d~~~ 710 (745)
-+|+|.=|--.+--|+..+.+.+-.++.........-+..=..-.-++ ++|+..|..
T Consensus 144 vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKAyYl~-e~e~~~W~~ 200 (234)
T PF10474_consen 144 VKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKAYYLP-EEELEEWIR 200 (234)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 489999998888899999999998776532233444455555555566 345544443
No 31
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=82.70 E-value=53 Score=33.45 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
.+.+..+..|......+...+..++..+.++...+.++....+.|...... ..+...++..+..... +..+-..
T Consensus 27 ~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-~~l~~~l~~l~~~~~~----~~~~~~~- 100 (236)
T PF09325_consen 27 EEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-KSLSEALSQLAEAFEK----ISELLEE- 100 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-chhHHHHHHHHHHHHH----HHHHHHH-
Confidence 455666677777777777778888887777777777777766666554333 2334333333333333 3333222
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHccccccC
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVEIDNKYK 172 (745)
Q Consensus 123 ~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~i~~~~~ 172 (745)
....+...+..-+.+.-..+..|..++.. ..|+.|...+.+...--..+.
T Consensus 101 ~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 101 QANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24455666777788888888888888874 468888888888865444433
No 32
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=81.65 E-value=18 Score=30.73 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=51.3
Q ss_pred ccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h---HHHHHHHHHhhhhhHHhHHHhHHHHHHhH
Q 004552 26 KFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRT-D---LDKHLLQLQKSAEVLDIVKADSDHMLSNV 101 (745)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~---~~~~l~~L~~~~~~l~~~~~~~~~l~~~i 101 (745)
+|-...|+...-.-.++.+|.+....|..+....+.+|...|-... + ....+..+.. .+..+......+...+
T Consensus 5 ~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~---~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 5 NFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMEN---DLSELRNLLSELQQSI 81 (87)
T ss_pred cCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4666677776666678999999999999999999999999998877 2 2334433333 4444444444444444
Q ss_pred h
Q 004552 102 R 102 (745)
Q Consensus 102 ~ 102 (745)
.
T Consensus 82 ~ 82 (87)
T PF08700_consen 82 Q 82 (87)
T ss_pred H
Confidence 3
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.19 E-value=29 Score=31.89 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK 82 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~ 82 (745)
.++.+...+..+..+.+.+-.++..+-+++..+...+.+|..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777788888888888888777777766655544
No 34
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=80.99 E-value=67 Score=32.59 Aligned_cols=117 Identities=13% Similarity=0.179 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+.+..+..|+.....+...+..+++.+.++...+..+......|...- ....+...++..+++.++++.-... .
T Consensus 8 ~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E-~~~~l~~~l~~~a~~~~~~~~~~~~-----~ 81 (216)
T cd07627 8 EKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLE-LSKSLSDLLAALAEVQKRIKESLER-----Q 81 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHhHHHHHHHHHHHHHHHHHHHH-----H
Confidence 456677788888888888888888888888877777777655665543 2345555555555444444333222 4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHc
Q 004552 124 RVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVE 166 (745)
Q Consensus 124 rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~ 166 (745)
..++.+.+.+-+.+.-..+..|..++.. .+|+.|...+.+...
T Consensus 82 a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~ 129 (216)
T cd07627 82 ALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKA 129 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555666666666666666653 678888888888864
No 35
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.26 E-value=69 Score=31.70 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+++.-+.+|......++.-...+++.+.++...+..+......|..+... .|...++..+.....++...+.|-..
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~--~L~~~l~~~~~~~~~~s~~~~~l~~~-- 83 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESG--EITEPFKIFSESLSQFSTSLRVLNKY-- 83 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch--hhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45666667777777777777777777777777777777655555555443 25554444443333333332222111
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHH
Q 004552 124 RVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFV 161 (745)
Q Consensus 124 rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i 161 (745)
....+...++++-..+..+..+|+. -||+.+..++
T Consensus 84 ---~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l 123 (185)
T cd07628 84 ---TDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL 123 (185)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1236888888998899999988873 5799888777
No 36
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.77 E-value=1.4e+02 Score=34.90 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=73.9
Q ss_pred CcchhhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHH---HHHHHHHhccCCccchhhhcCCCccccchhHH
Q 004552 435 LTTSMVDDVFYVLQSCLR--RAISTSNISSVIAVLSSASSLLSNE---YQEALQQKTREPNLGAKLFLGGVGVQKTGTEI 509 (745)
Q Consensus 435 ~~SS~vDDvf~il~k~l~--Ralstg~~~~~~a~ln~~~~~L~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 509 (745)
+.|-.|-|||--+++++. +-+.+.++.++..++..+.+-|.+. |.+.++.-+.... .+ ..--
T Consensus 781 ~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllqyadivskdfp~y~-------~k------eklp 847 (1283)
T KOG1011|consen 781 LFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQYADIVSKDFPKYC-------HK------EKLP 847 (1283)
T ss_pred hhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hh------ccCC
Confidence 456666699999999876 5589999999999988887777654 4455665554311 11 1124
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCchhhhhhh
Q 004552 510 ATALNNMDVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRIRPVLDSV 587 (745)
Q Consensus 510 ~~~LNn~~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl~~~l~~~ 587 (745)
|+.+||.+.----++++...+. +.+.. ..+-+-+..+..+++++++.--..+...+.|+|...+..+
T Consensus 848 cilmnnvqqlrvqlekmfeamg---------gkeld--~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qm 914 (1283)
T KOG1011|consen 848 CILMNNVQQLRVQLEKMFEAMG---------GKELD--EEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQM 914 (1283)
T ss_pred eeeeccHHHHHHHHHHHHHHhc---------chhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHH
Confidence 7889987744333333332221 11100 0111223333456666666555555666777776554433
No 37
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=76.19 E-value=13 Score=33.14 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=54.3
Q ss_pred HHHHhc-cccccchhhHHhHHHHHHHHHHhhcCcc-hhhhHHHHHHHHHHHhcCCChhhhhhhhcCCCCCcccccCHHHH
Q 004552 648 EVIMMQ-KKFSQLGGLQLDRDTRASVSHFSSMTQR-TVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEV 725 (745)
Q Consensus 648 E~~i~~-~~fn~lGal~ldkDvr~lis~l~~~~~~-~lRekF~rL~QI~~lL~~e~~~e~~d~~~~~~~~~~w~Ls~~E~ 725 (745)
.+.+.+ ..++.--|+++..-++.+-.++.+.+.. .+++.|..+.|++.+|.++. ..+.|+..- ..+-+.|||..+
T Consensus 16 N~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~~k-~~~~d~~~~--~~~c~~Ln~~Qi 92 (105)
T PF01843_consen 16 NSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQLRK-STLQDWDSL--RETCPSLNPAQI 92 (105)
T ss_dssp HHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC---SSHHHHHHH--CCCTTTS-HHHH
T ss_pred HHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcC-cchhHHHHH--HHHcccCCHHHH
Confidence 343433 4568889999998888888887776554 45999999999999999953 222222211 124578999999
Q ss_pred HHHHhc
Q 004552 726 RRVLGL 731 (745)
Q Consensus 726 ~~il~l 731 (745)
+++|..
T Consensus 93 ~~iL~~ 98 (105)
T PF01843_consen 93 RKILSN 98 (105)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 999873
No 38
>PRK11637 AmiB activator; Provisional
Probab=73.91 E-value=1.2e+02 Score=34.31 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhh
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRS 103 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~ 103 (745)
+++++.+..+..+..++.+++...-++..+...++..+.+ +|..+......+...+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~---qi~~~~~~i~~~~~~i~~ 100 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEE---AISQASRKLRETQNTLNQ 100 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777655555555555555555 555555555555544443
No 39
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=71.58 E-value=26 Score=36.55 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhh
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRS 103 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~ 103 (745)
++|.+.|.+|.+++..+.++|..++++-..+.. .+..++..++++..-|++
T Consensus 255 ~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~----------~lse~~e~y~q~~~gv~~ 305 (384)
T KOG0972|consen 255 KEITKALEKIASREKSLNNQLASLMQKFRRATD----------TLSELREKYKQASVGVSS 305 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcccHHH
Confidence 578888888888888888888887764332222 455566666666655543
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.33 E-value=3.6e+02 Score=34.96 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004552 298 ICELQEECDSRGCLILKKYMEY 319 (745)
Q Consensus 298 i~~lq~e~d~q~~~Il~~f~~~ 319 (745)
+..+-.++..++..|=+.+.+.
T Consensus 1001 l~~~~r~I~~~s~~l~~~v~~~ 1022 (1201)
T PF12128_consen 1001 LEDFDRRIKSQSRRLSREVSED 1022 (1201)
T ss_pred HHHHhhHHHHHHHHHHHHHhhh
Confidence 4444444555444444444443
No 41
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=68.00 E-value=1.4e+02 Score=30.04 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhH
Q 004552 45 MTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSR 124 (745)
Q Consensus 45 i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~r 124 (745)
++.....|......++.-...+++.+.++...+.++......+..+. ..|...+..++.-++..+.-+..+-..
T Consensus 19 ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E---~~l~~~le~~g~~~d~~~~~~~~~~~~--- 92 (201)
T cd07622 19 LKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIE---KEMGDGLQKAGHYMDSYAASIDNGLED--- 92 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 56666677777766676666777777777777777777555555444 355555555555555554444443222
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHcc
Q 004552 125 VNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVEI 167 (745)
Q Consensus 125 v~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~i 167 (745)
...+.+.+++.-....-+...|+. -++|.+..++.+....
T Consensus 93 ---~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~ 137 (201)
T cd07622 93 ---EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ 137 (201)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888874 4678877777777543
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.14 E-value=1e+02 Score=28.26 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 39 LTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 39 l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
..-+..++..+..|..+..++.++|.++.............+..+...+..+......+..+++ .|...+
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG----------EK~E~v 98 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG----------EKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------chHHHH
Confidence 3456777888888888888888888888888876665444555555588888888888887765 455555
Q ss_pred HHHHhHHHHHHHHHH
Q 004552 119 DLAQSRVNDTLLRID 133 (745)
Q Consensus 119 D~~~~rv~~t~~~V~ 133 (745)
+..+..|.+-.++..
T Consensus 99 eEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 99 EELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444433
No 43
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.02 E-value=3.3e+02 Score=33.28 Aligned_cols=136 Identities=12% Similarity=0.181 Sum_probs=108.2
Q ss_pred HHHhhccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhH
Q 004552 33 LAYVRTLT---DVGAMTRLLHECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLA 108 (745)
Q Consensus 33 ~~~~~~l~---~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A 108 (745)
-..++.++ +..++...+..|+....+-+..|..++.+.. +.++.+...+.+...++..++.-+++-........+-
T Consensus 33 Invi~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll 112 (982)
T KOG3691|consen 33 INVIRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELL 112 (982)
T ss_pred hhHHHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5677888899999999999999999999988 7888887777777777777777777776665554444
Q ss_pred HHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccc
Q 004552 109 DQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEID 168 (745)
Q Consensus 109 ~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~ 168 (745)
+-=.+.+++|=.+-..=+..++++..+-+|+.--+.++..+.+++|-.|+..+.|....-
T Consensus 113 ~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~l 172 (982)
T KOG3691|consen 113 NTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELL 172 (982)
T ss_pred hcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567777777777777889999999999999999999999999999999999996533
No 44
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.11 E-value=71 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=16.8
Q ss_pred hHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHH
Q 004552 86 VLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDL 120 (745)
Q Consensus 86 ~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~ 120 (745)
+++...+-..++..-|.++..-.++|..+|..+..
T Consensus 76 klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555554444444444444444443
No 45
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=60.90 E-value=6.3 Score=36.78 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=0.0
Q ss_pred cccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004552 27 FGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRT 71 (745)
Q Consensus 27 ~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~ 71 (745)
|-...++..-+.-.++.++++ .|....+.+.++|-.+|..-.
T Consensus 13 Fd~d~Fl~~~~~~~~Le~L~~---dL~~~~~~L~~~Li~lIN~dY 54 (133)
T PF06148_consen 13 FDVDEFLSSNRRYVSLEDLRK---DLRSYSKELKNELIELINDDY 54 (133)
T ss_dssp ---------------------------------------------
T ss_pred CCHHHHHHHccCCCCHHHHHH---HHHHHHHHHHHHHHHHHHhhH
Confidence 333344444455556666666 777888888899988888766
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.36 E-value=1.4e+02 Score=27.59 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhH
Q 004552 54 AYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNV 101 (745)
Q Consensus 54 ~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i 101 (745)
.+...++.+|+...+-+.....++.++++ ++..+..+.+.+..+|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~---dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVRE---DVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333333 4444444444444444
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=57.83 E-value=1.7e+02 Score=27.67 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHH-
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELD- 119 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD- 119 (745)
...++...+..+..+....+.++.++-..-..++..+..+.. .|..+...........+ .++.+.++|..|.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~---~l~~~k~~lee~~~~~~----~~E~l~rriq~LEe 87 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE---QLKEAKEKLEESEKRKS----NAEQLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHH
Confidence 345566667777777777777777777766667766666665 67777777666665543 3446666666554
Q ss_pred ---HHHhHHHHHHHHHH
Q 004552 120 ---LAQSRVNDTLLRID 133 (745)
Q Consensus 120 ---~~~~rv~~t~~~V~ 133 (745)
....++.+|...+.
T Consensus 88 ele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445554444444
No 48
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=56.76 E-value=1.9e+02 Score=33.83 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcccHHHHHHHHHHH
Q 004552 194 KKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKD 273 (745)
Q Consensus 194 ~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~~~~~~L~~Lfe~ 273 (745)
...|......++.+.+.+++++|-.. ..|++.....+.+.|.....+.++... ....+..|+..+-.+++.
T Consensus 225 ~~~~~~ll~~~~~~~L~~ly~l~~~~---~~~~~~l~~~~~~~i~~~g~~~~~~~~------~~~~~~~~i~~ll~l~~~ 295 (588)
T PF00888_consen 225 SSGFRDLLEEDDKEDLKRLYRLFSRV---PNGLESLRDAFKEYIKKEGQNIIDSFE------KSSDPKEFIEDLLELYDK 295 (588)
T ss_dssp HTCHHHHHHTT-HHHHHHHHHHHTTS---TTHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcc---cCCCchHHHHHHHHHHHHhHHHHhhcc------cccchHHHHHHHHHHHHH
Confidence 56777888999999999999988876 678888888888888766655443211 112344677777777766
Q ss_pred HHHHHHHhHHHHHhhhCcc
Q 004552 274 IVLAIEENDEILRGLCGED 292 (745)
Q Consensus 274 ia~ii~~h~~iI~~~yg~~ 292 (745)
+. .++..+|+..
T Consensus 296 ~~-------~l~~~~F~~~ 307 (588)
T PF00888_consen 296 YE-------KLIQECFDND 307 (588)
T ss_dssp HH-------HHHHHTTTT-
T ss_pred HH-------HHHHHhcccc
Confidence 44 4456678865
No 49
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.29 E-value=1.6e+02 Score=32.53 Aligned_cols=97 Identities=10% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
.++.+.|.+|.+++.-+.++|..+++ +.......|..++..+++....|++-...=.+|+.++.++-.+.
T Consensus 248 ~~i~~~lekI~sREk~iN~qle~l~~----------eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 248 QDISKTLEKIESREKYINNQLEPLIQ----------EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-------------HHHHHHHHHH-HHHHhhhhHHHHHHhh
Q 004552 123 S-------------RVNDTLLRID-AIVDRNNCLDGVKTAL 149 (745)
Q Consensus 123 ~-------------rv~~t~~~V~-~v~~Lk~~~~~v~~al 149 (745)
. ++++|+..+. .|..|---|.-++.+|
T Consensus 318 eerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh~L 358 (359)
T PF10498_consen 318 EERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEHTL 358 (359)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehhhc
No 50
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=55.00 E-value=1.9e+02 Score=27.82 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHHHHccc
Q 004552 151 EENFEAAAKFVQRFVEID 168 (745)
Q Consensus 151 ~~d~e~AA~~i~r~l~i~ 168 (745)
+-+|..|..|..|+.+.-
T Consensus 114 h~~fkea~~Y~~rf~q~l 131 (157)
T PF04136_consen 114 HPNFKEAEVYLIRFRQCL 131 (157)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 678889999999887644
No 51
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.50 E-value=4.3e+02 Score=31.27 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 004552 41 DVGAMTRLLHECIAYQRALDV 61 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~ 61 (745)
++++...+...|..+.+.+|.
T Consensus 187 ~igeaeaFaE~L~reLq~Ldg 207 (867)
T KOG2148|consen 187 GIGEAEAFAERLKRELQALDA 207 (867)
T ss_pred chhhHHHHHHHHHHHHHhhhc
Confidence 455555555666666665554
No 52
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.04 E-value=2.8e+02 Score=28.97 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=46.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHH
Q 004552 36 VRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQV 111 (745)
Q Consensus 36 ~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~i 111 (745)
+.++.+++.+-..++.|......+..+|.............+..+.. .+..+..++..+...+..+...|..+
T Consensus 6 l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~---~l~~L~~d~~~L~~k~~~~~~~~~~l 78 (264)
T PF06008_consen 6 LQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEK---ELESLEQDVENLQEKATKVSRKAQQL 78 (264)
T ss_pred HhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777788888888888888888777766655554444 45555555555555554444333333
No 53
>PLN02956 PSII-Q subunit
Probab=53.59 E-value=91 Score=30.67 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=54.4
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHc-cccccC----CCCccHHHHHHHHHHHHH
Q 004552 116 RELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVE-IDNKYK----DSGSDQREQLLTAKKQLE 190 (745)
Q Consensus 116 r~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~-i~~~~~----~~~~~~~~~L~~~~~~L~ 190 (745)
++...+-.|++++.+ .+.++...|++++|--.=.+||-=++ +-..+. .-.++-+..+.+...+|-
T Consensus 80 ~speeA~ar~k~~A~----------~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LF 149 (185)
T PLN02956 80 RTVEEAESGVRGHAE----------NLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLF 149 (185)
T ss_pred CCHHHHHHHHHHHHH----------HHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHH
Confidence 344555566666554 33345567889999766555553222 111111 113345677777888888
Q ss_pred HHHHHHHHHHHHcCChhHHHHH
Q 004552 191 GIVKKRVLAAVDQRDHGTILRF 212 (745)
Q Consensus 191 ~~~~~~F~~A~~~~D~~~v~r~ 212 (745)
..+ .++|.|++.+|..++..+
T Consensus 150 d~l-~~LD~AAR~kd~~~a~k~ 170 (185)
T PLN02956 150 NSV-TKLDYAARDKDETRVWEY 170 (185)
T ss_pred HHH-HHHHHHHhcCCHHHHHHH
Confidence 888 899999999999876654
No 54
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.40 E-value=2.9e+02 Score=30.73 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=12.5
Q ss_pred hccCCHHHHHHHHHHHHHHHHH
Q 004552 37 RTLTDVGAMTRLLHECIAYQRA 58 (745)
Q Consensus 37 ~~l~~~~~i~~~l~~l~~~~~~ 58 (745)
..++.+.++.+.|+.|++-.-.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGI 227 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666554444
No 55
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=53.29 E-value=1.2e+02 Score=28.81 Aligned_cols=90 Identities=8% Similarity=0.126 Sum_probs=56.9
Q ss_pred hHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHcc-ccccC----CCCccHHHHHHHHH
Q 004552 112 SRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEI-DNKYK----DSGSDQREQLLTAK 186 (745)
Q Consensus 112 s~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i-~~~~~----~~~~~~~~~L~~~~ 186 (745)
..++.+|..-..+++++.++.. .+..-++++||-..=+.||-=++- -.+.. .-.+..+..+.+..
T Consensus 32 p~~l~~i~~~~~~i~~~~~r~~----------eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~ 101 (142)
T TIGR03042 32 PAQLAQIQRQAEGIEAAKDRLP----------ELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALA 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH----------HHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHH
Confidence 4566666665555555555554 455666789998877777754332 11111 11233456666777
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHH
Q 004552 187 KQLEGIVKKRVLAAVDQRDHGTILRF 212 (745)
Q Consensus 187 ~~L~~~~~~~F~~A~~~~D~~~v~r~ 212 (745)
.+|.+.+ .+.|.|++.+|...+.++
T Consensus 102 ~~Lf~~L-~~LD~AA~~kd~~~a~k~ 126 (142)
T TIGR03042 102 KELKDDL-EKLDEAARLQDGPQAQKA 126 (142)
T ss_pred HHHHHHH-HHHHHHHHhcCHHHHHHH
Confidence 7788877 888999999999766544
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.94 E-value=2.4e+02 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRT 71 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~ 71 (745)
.++..++.+..+..+....++.+......-.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444333
No 57
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.01 E-value=3e+02 Score=28.40 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+....+..|......+-..++.+++++.++...+..+......|.... ....|.+..+..+++.+ +|+.+ ..+.
T Consensus 26 ~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E-~~~~ls~~l~~laev~~----ki~~~-~~~q 99 (234)
T cd07664 26 EKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSE-DHTALSRALSQLAEVEE----KIDQL-HQDQ 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-ccchHHHHHHHHHHHHH----HHHHH-HHHH
Confidence 445555566666666666666666666666655656666555554432 22344444444443333 33333 2222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHH
Q 004552 124 RVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFV 165 (745)
Q Consensus 124 rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l 165 (745)
--++.+.+-+-+.+--.-+..|..++.. ..|..|...+.+..
T Consensus 100 a~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr 146 (234)
T cd07664 100 AFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKR 146 (234)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333333344444444432 56777777776664
No 58
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=49.22 E-value=3.3e+02 Score=29.63 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHH
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL-LQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELD 119 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l-~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD 119 (745)
-...+....+.+..+.+++..+-...+-+..+....+ .++..+...++.+.....++.+.+......+.++...-+...
T Consensus 15 Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~ 94 (338)
T PF04124_consen 15 EPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKAS 94 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777766655555333333 344555557777777777777777777777777777777777
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHcc
Q 004552 120 LAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEI 167 (745)
Q Consensus 120 ~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i 167 (745)
....+..+-++.++-=.-|..|+..= .-.+-.+ -+.|+.|+.+.
T Consensus 95 ~~l~~~~~l~diLElP~Lm~~ci~~g---~y~eALe-l~~~~~~L~~~ 138 (338)
T PF04124_consen 95 LLLENHDRLLDILELPQLMDTCIRNG---NYSEALE-LSAHVRRLQSR 138 (338)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcc---cHhhHHH-HHHHHHHHHHh
Confidence 77666666666655444455665442 2222232 36667777543
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.12 E-value=2e+02 Score=31.93 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=57.8
Q ss_pred hHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHH
Q 004552 32 ALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQV 111 (745)
Q Consensus 32 ~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~i 111 (745)
|...-..-..+.++...+.+..+....+.+++..+......+-+++..... .|..++.+..++.........++...
T Consensus 5 ~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~---~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 5 YSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKEL---ELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344566777777777777777777777766666655555532222 45555666666555444445566688
Q ss_pred hHHHHhHHHHHhHHHH
Q 004552 112 SRKVRELDLAQSRVND 127 (745)
Q Consensus 112 s~kVr~LD~~~~rv~~ 127 (745)
..++..++..+-|+..
T Consensus 82 t~~~~~~en~~~r~~~ 97 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLN 97 (459)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777653
No 60
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=49.08 E-value=1.2e+02 Score=25.87 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=37.1
Q ss_pred cccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004552 25 VKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL 77 (745)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l 77 (745)
-.|+..+|-..-. ++.+|..+|..|..+-..+..+|..++....+...++
T Consensus 21 ~e~~~~E~~~ins---~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 21 DEFDEEEYAAINS---MLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred ccccHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3466666544443 7888889999999888888888888888776655555
No 61
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=49.05 E-value=1.3e+02 Score=29.89 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhCc------hhh-h--hhh
Q 004552 517 DVSSEYVLKLKHEIEEQCAEVFPTPADREKVKSCLSELGDLSKMFKQILNMGMEQLVATVTPRI------RPV-L--DSV 587 (745)
Q Consensus 517 ~~s~~y~~~L~~~l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~~ll~~~i~~L~~~i~~rl------~~~-l--~~~ 587 (745)
+.+.++++.|+.++...+....+.....-.+..+|+.|. +.--|.+-++..++.+.......- -.. | ..+
T Consensus 22 ~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLG-i~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLL 100 (183)
T PF01397_consen 22 EKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLG-ISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLL 100 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHH
Confidence 467778888988888887776653222333336666653 556677777777777754432222 111 1 234
Q ss_pred cccccccChHhhhhhc-cCChHHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 004552 588 ATISYELSEAEYADNE-VNDPWVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIMMQKKFS 657 (745)
Q Consensus 588 ~~~~y~l~e~ey~~~e-~~d~~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i~~~~fn 657 (745)
+...|.++.|-|...- .++-|........+.++.-|...--.-.=+.+++.+..|-...|+.++-....+
T Consensus 101 RqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 171 (183)
T PF01397_consen 101 RQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIP 171 (183)
T ss_dssp HHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5677888888887643 333366667788899999998765555557799999999999999977654443
No 62
>PRK02224 chromosome segregation protein; Provisional
Probab=48.57 E-value=4.5e+02 Score=32.66 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004552 49 LHECIAYQRALDVDLD 64 (745)
Q Consensus 49 l~~l~~~~~~~~~~L~ 64 (745)
+..+......+...++
T Consensus 511 l~~l~~~~~~l~~~~~ 526 (880)
T PRK02224 511 IERLEERREDLEELIA 526 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 63
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.50 E-value=1.1e+02 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=13.2
Q ss_pred hhhHHHHhHHHHhHHHHHhHHHHHHHHHH
Q 004552 105 SDLADQVSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 105 ~~~A~~is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
+.+.+.+..|.+.+|..-..+.+.-+.|+
T Consensus 57 n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 57 NELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 64
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.84 E-value=3.4e+02 Score=32.54 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 004552 180 EQLLTAKKQLEGIVKKRVLAAVDQR 204 (745)
Q Consensus 180 ~~L~~~~~~L~~~~~~~F~~A~~~~ 204 (745)
...+..+..|.+.+.+-|....++.
T Consensus 498 ~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 498 KLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667788888888888888764
No 65
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]
Probab=47.74 E-value=4.5e+02 Score=29.57 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccCCcc
Q 004552 182 LLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQV 261 (745)
Q Consensus 182 L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~ 261 (745)
+....++.+..+..+-...+++.+.+.+.+.|+|.--. -.|++-..+-+-.||....-+++.+..+.. +..+-
T Consensus 262 VnaLv~sf~~tIlAEC~~lI~~~etErL~lmfrLmdrv---~~Giepmlkdl~~HI~saGLaDM~~aaE~i----ttDsE 334 (777)
T KOG2285|consen 262 VNALVESFEDTILAECSKLIASKETERLQLMFRLMDRV---RSGIEPMLKDLDTHIRSAGLADMRNAAENI----TTDSE 334 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---hhcchhHHHHHHHHHHhhhHHHHHhhhhhc----cCCHH
Confidence 33445666666667777788899888888877776555 669999999999998655555554433332 23566
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 004552 262 NFVGCLTNLFKDIVLAIE 279 (745)
Q Consensus 262 ~~~~~L~~Lfe~ia~ii~ 279 (745)
-|+..|..||.-++..|.
T Consensus 335 kYVeqLL~lFnkFS~LVr 352 (777)
T KOG2285|consen 335 KYVEQLLLLFNKFSSLVR 352 (777)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999987655544
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.52 E-value=1.8e+02 Score=35.27 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHH
Q 004552 73 LDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVR 116 (745)
Q Consensus 73 ~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr 116 (745)
.++++.+|+.+......+.+.++.|...+..+.+.=+.+..|+.
T Consensus 574 ~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 574 KEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777777766655555544444
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.95 E-value=2.1e+02 Score=28.88 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004552 39 LTDVGAMTRLLHECIAYQRALDVDLDSLLSQ 69 (745)
Q Consensus 39 l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~ 69 (745)
++....++..+.+++.+.+++.++|+..-.+
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666677778888888888888775544
No 68
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.25 E-value=3.6e+02 Score=27.95 Aligned_cols=85 Identities=7% Similarity=0.181 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 39 LTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 39 l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
..++.++.+...+.....+...++.+..-.+...+...+..|.+ .+..+...-.++...+.+-...-..+..++.++
T Consensus 20 a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~---e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 20 AATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLER---EIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777788888888877777777777766666 666666666777766665554444444555555
Q ss_pred HHHHhHHH
Q 004552 119 DLAQSRVN 126 (745)
Q Consensus 119 D~~~~rv~ 126 (745)
...+..+.
T Consensus 97 ~~~~~~l~ 104 (251)
T PF11932_consen 97 EETRQELV 104 (251)
T ss_pred HHHHHHHH
Confidence 44444443
No 69
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.80 E-value=3.8e+02 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHHHc
Q 004552 151 EENFEAAAKFVQRFVE 166 (745)
Q Consensus 151 ~~d~e~AA~~i~r~l~ 166 (745)
++.|+.++.-..++..
T Consensus 136 K~~Y~~~c~e~e~~~~ 151 (269)
T cd07673 136 KENYNAKCLEQERLKK 151 (269)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4778888877666643
No 70
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=45.59 E-value=1.8e+02 Score=24.80 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLS 68 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~ 68 (745)
+.++.+.+..++.+...+..+.+..++
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~ 54 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLH 54 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 71
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.56 E-value=3.2e+02 Score=27.15 Aligned_cols=114 Identities=12% Similarity=0.190 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HH--HHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDL-DK--HLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRE 117 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~-~~--~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~ 117 (745)
.+..+.+.+..+..+.+++..+|...-..+.+- +| .|.+|..+...+..+..+..... ..-..+|..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~----------~~Dp~~i~~ 139 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS----------ENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCHHHHHH
Confidence 566777777788888888888888887666633 33 33445554444444444433222 223356666
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHcccccc
Q 004552 118 LDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKY 171 (745)
Q Consensus 118 LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~ 171 (745)
+..+-.++.+++.+-.| ++..+..-+.++ +-.....+++...||+.|
T Consensus 140 ~~~~~~~~~~~anrwTD------NI~~l~~~~~~k-~~~~~~~i~k~f~Ip~d~ 186 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTD------NIFSLKSYLKKK-FGMDEEDIRKEFGIPEDF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHh------hHHHHHHHHHHh-cCCCHHHHHHHcCCcccc
Confidence 66666666666666552 333333333321 233345566777788765
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.46 E-value=3.9e+02 Score=28.91 Aligned_cols=14 Identities=0% Similarity=-0.012 Sum_probs=5.8
Q ss_pred hHHHhHHHHHHhHh
Q 004552 89 IVKADSDHMLSNVR 102 (745)
Q Consensus 89 ~~~~~~~~l~~~i~ 102 (745)
.+..+..++.+...
T Consensus 183 ~L~~e~~~L~~~~~ 196 (312)
T smart00787 183 ALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHhHH
Confidence 34444444444333
No 73
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=45.37 E-value=41 Score=33.79 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHH---HHcccc-ccCC-CCccHHHHHHHHHHHHHHHHH
Q 004552 120 LAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQR---FVEIDN-KYKD-SGSDQREQLLTAKKQLEGIVK 194 (745)
Q Consensus 120 ~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r---~l~i~~-~~~~-~~~~~~~~L~~~~~~L~~~~~ 194 (745)
....|+++|.+.+. .+...|+++.|...-.+||+ +|..+= .+.. -+.+.+..+.+...+|-.-|
T Consensus 100 ea~~Rik~sa~~L~----------~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~i- 168 (202)
T PF05757_consen 100 EAAARIKESAKRLL----------SLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNI- 168 (202)
T ss_dssp CHHHHHHHHHHHHC----------CCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHH----------HHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-
Confidence 34556666655554 23345788889876666665 222211 1112 23345777777888888888
Q ss_pred HHHHHHHHcCChhHHHHH
Q 004552 195 KRVLAAVDQRDHGTILRF 212 (745)
Q Consensus 195 ~~F~~A~~~~D~~~v~r~ 212 (745)
+++|.|++.+|...+..|
T Consensus 169 e~LD~Aar~K~~~~a~~~ 186 (202)
T PF05757_consen 169 EELDYAARSKDVPEAEKY 186 (202)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 899999999999876654
No 74
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.89 E-value=3.8e+02 Score=27.84 Aligned_cols=112 Identities=6% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+++.....|......++.-...+++++.++.....+++.+.+-+..+... |...++..+..-++.+. .++..-.
T Consensus 58 Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~---L~~~L~~~a~~~d~~~~---~~~~~~~ 131 (243)
T cd07666 58 EMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE---LADSLKGMASCIDRCCK---ATDKRMK 131 (243)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh---hhHHHHHHHHHHHHHHH---HHHHHHH
Confidence 34444555555555555555555555555544444444433332222222 22222222211111111 2222222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHH
Q 004552 124 RVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQR 163 (745)
Q Consensus 124 rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r 163 (745)
...+ .+.+.+.+.-..+..+...++. .+++..-.++.+
T Consensus 132 ~l~~--~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k 174 (243)
T cd07666 132 GLSE--QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALAN 174 (243)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 6777777777777777777764 445555555544
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=43.48 E-value=5.8e+02 Score=31.64 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004552 184 TAKKQLEGIVKKRVLAA 200 (745)
Q Consensus 184 ~~~~~L~~~~~~~F~~A 200 (745)
.+...+...+..-|..-
T Consensus 740 ~~~~~l~~~~~~if~~l 756 (880)
T PRK03918 740 RALSKVGEIASEIFEEL 756 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444554444444444
No 76
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.59 E-value=2.5e+02 Score=32.26 Aligned_cols=66 Identities=9% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHH
Q 004552 51 ECIAYQRALDVDLDSLLSQRT-DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVR 116 (745)
Q Consensus 51 ~l~~~~~~~~~~L~~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr 116 (745)
+-..+...+-.++...+..-+ ..++++.+|+.+..+...+.+.++.|+.++.++...-+.+-.+.+
T Consensus 574 qYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~ 640 (741)
T KOG4460|consen 574 QYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMK 640 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555555555555544 344455666666666666666666666666666544444433333
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.87 E-value=2.1e+02 Score=35.92 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHH
Q 004552 40 TDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELD 119 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD 119 (745)
+++...+++|.+++.+.+..+..+.+.-++-.++++.|.+|+. +....-.+|.+.+..+..+..-|.+.-...+.|+
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~---~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH---KAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHH
Q 004552 120 LAQSRVNDTLLR 131 (745)
Q Consensus 120 ~~~~rv~~t~~~ 131 (745)
..-+++.+.++.
T Consensus 1668 ~~~~~~~~l~~~ 1679 (1758)
T KOG0994|consen 1668 KYYELVDRLLEK 1679 (1758)
T ss_pred HHHHHHHHHHHH
No 78
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.39 E-value=4.5e+02 Score=27.42 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
++.++...|.............+..+=..-..+..++..|+. +.+.+..++.++......+.+-|..+...|+.+
T Consensus 25 ~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~---k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l 99 (264)
T PF06008_consen 25 SIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE---KATKVSRKAQQLNNNTERTLQRAQDLEQFIQNL 99 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655444444444444444333332344444445555 666666666666666666655555554444443
No 79
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=40.12 E-value=4.2e+02 Score=27.03 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHH
Q 004552 49 LHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDT 128 (745)
Q Consensus 49 l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t 128 (745)
+..++..........++++..+.++......+......|..... ..|.+..+..+ .+..+++.|...+.. ++.
T Consensus 33 l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~--t~L~~~ls~la----e~~ek~~~l~~r~A~-~d~ 105 (219)
T cd07621 33 LVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP--TPLDKFLLKVA----ETFEKLRKLEGRVAS-DED 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHH----HHHHHHHHHHHHHHH-hhH
Confidence 33444444444444444444444444333444443333333322 23333333222 222445544433321 223
Q ss_pred HHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHccc
Q 004552 129 LLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVEID 168 (745)
Q Consensus 129 ~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~i~ 168 (745)
+.+-+-+.+--..+..+..++.+ .+|+.|...+.+...-+
T Consensus 106 l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~ 150 (219)
T cd07621 106 LKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKN 150 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhch
Confidence 33333333333334444444432 68999999888888543
No 80
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.54 E-value=3e+02 Score=25.17 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDI 89 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~ 89 (745)
.|.+.+.....+...+..++..++.+...+++.+.+...+...|..
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555566666667777777777777777776666555554444443
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.23 E-value=4.5e+02 Score=27.03 Aligned_cols=56 Identities=11% Similarity=0.200 Sum_probs=27.2
Q ss_pred hHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHH-HHHHhhhh
Q 004552 86 VLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRID-AIVDRNNC 141 (745)
Q Consensus 86 ~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~-~v~~Lk~~ 141 (745)
.|..+...+..+.+.|...-.--..++..+++|...-....+-.+... .|..|..-
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~ 184 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEK 184 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 444455555555555554444444555555555555555544444333 24444333
No 82
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.82 E-value=3.6e+02 Score=30.04 Aligned_cols=24 Identities=4% Similarity=0.158 Sum_probs=14.4
Q ss_pred HHhHHHHhHHHHHhHHHHHHHHHH
Q 004552 110 QVSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 110 ~is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
.|-.|++.|...|..+.++.+++.
T Consensus 316 ~lv~RL~tL~~lH~~a~~~~~~l~ 339 (388)
T PF04912_consen 316 SLVERLKTLKSLHEEAAEFSQTLS 339 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555
No 83
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=38.45 E-value=1e+02 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=21.0
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHHH
Q 004552 140 NCLDGVKTALDEENFEAAAKFVQRFV 165 (745)
Q Consensus 140 ~~~~~v~~al~~~d~e~AA~~i~r~l 165 (745)
.|+..+..+++.+||+.|+..+.++.
T Consensus 42 ~~~~~l~~~f~~~d~~~A~~~~~kLk 67 (78)
T PF07743_consen 42 ELIKELAEAFDAKDWEEAKEALRKLK 67 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 47777778888999999999999873
No 84
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=38.21 E-value=3.4e+02 Score=25.34 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=19.8
Q ss_pred HHHHHHhHhhhhhhHHHHhHHHHhHHHH
Q 004552 94 SDHMLSNVRSTSDLADQVSRKVRELDLA 121 (745)
Q Consensus 94 ~~~l~~~i~~~~~~A~~is~kVr~LD~~ 121 (745)
...|...+.++..++..+..+|+.|+..
T Consensus 43 ~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 43 KQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777888888888888754
No 85
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.42 E-value=5.3e+02 Score=27.37 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHH
Q 004552 187 KQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVI 237 (745)
Q Consensus 187 ~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i 237 (745)
+.+...+...|-+++...=...+.+++...|.......++ .| +.+|..|
T Consensus 214 ~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~~~~-~y-~~lC~~v 262 (291)
T PF10475_consen 214 QSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERSSKM-SY-KDLCKQV 262 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccC-CH-HHHHhhC
Confidence 4455667788888888888888888888776644433333 45 7777765
No 86
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.30 E-value=3.6e+02 Score=25.43 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 004552 3 SREMSPAS 10 (745)
Q Consensus 3 ~~~~~~~~ 10 (745)
|+.+|+.+
T Consensus 13 s~G~~~~~ 20 (151)
T PF11559_consen 13 SRGYPSDG 20 (151)
T ss_pred HCCCCCCC
Confidence 44444443
No 87
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.28 E-value=4.2e+02 Score=26.13 Aligned_cols=119 Identities=12% Similarity=0.122 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhH-HHHHHhHhhhhhhHHHHhHHHHhHHHH
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADS-DHMLSNVRSTSDLADQVSRKVRELDLA 121 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~-~~l~~~i~~~~~~A~~is~kVr~LD~~ 121 (745)
.+++..+..+......+...+..+++.+.++...+.+|......|....... ..+...+..++.....++.....+
T Consensus 7 ~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 83 (218)
T cd07596 7 EEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQ--- 83 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHH---
Confidence 4566777777778888888888888888877777777777655565543321 145555555554444443332221
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHc
Q 004552 122 QSRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVE 166 (745)
Q Consensus 122 ~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~ 166 (745)
--.....+++-+.+....+..+..+|.. .+|+.+-..+.+...
T Consensus 84 --~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~ 131 (218)
T cd07596 84 --ANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKA 131 (218)
T ss_pred --HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455667777777788888888864 567777777766654
No 88
>PRK02224 chromosome segregation protein; Provisional
Probab=36.79 E-value=7.8e+02 Score=30.55 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhH-----HHhHHHHHHhHhhhhhhHHHHhHHHH
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIV-----KADSDHMLSNVRSTSDLADQVSRKVR 116 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~-----~~~~~~l~~~i~~~~~~A~~is~kVr 116 (745)
+.++...+..+..+...+...+..+-....++...+.++.. .+..+ ...++.+.............+..++.
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~---~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~ 670 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE---RKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLD 670 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333333333332 33322 22334444444444445555555555
Q ss_pred hHHHHHhHHHHHHHH
Q 004552 117 ELDLAQSRVNDTLLR 131 (745)
Q Consensus 117 ~LD~~~~rv~~t~~~ 131 (745)
.+...+.++..-+..
T Consensus 671 ~~~~~~~~l~~~i~~ 685 (880)
T PRK02224 671 ELREERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 89
>PRK09039 hypothetical protein; Validated
Probab=36.41 E-value=6.1e+02 Score=27.76 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhh----hhhhHHHHhHHHHh
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRS----TSDLADQVSRKVRE 117 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~----~~~~A~~is~kVr~ 117 (745)
++..++.|..|+.+.+.+..-|.---+...+++..+.+|+. .+......=..+.+.... ..+...+...-=+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~---~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA---SLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 44455555555555555444444333333344445544444 333222222223322221 11222233333466
Q ss_pred HHHHHhHHHHHHHHHH----HHHHhhhhHHHHHHhh
Q 004552 118 LDLAQSRVNDTLLRID----AIVDRNNCLDGVKTAL 149 (745)
Q Consensus 118 LD~~~~rv~~t~~~V~----~v~~Lk~~~~~v~~al 149 (745)
|+.++....++.-.|. +|-.||.-+..++.+|
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777665554 3444444444444444
No 90
>PRK09039 hypothetical protein; Validated
Probab=36.02 E-value=4.2e+02 Score=29.01 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHhHHHHhHHHHHhHHHHHHHHHH
Q 004552 108 ADQVSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 108 A~~is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
-..+...|..|-.....++.+++-.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444444
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.02 E-value=5.5e+02 Score=27.73 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK 82 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~ 82 (745)
...++.+.+..+..++..+.++|..+-++..++++.+..|..
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888888777777777766655555
No 92
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=35.22 E-value=3.2e+02 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred HHHHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 94 SDHMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 94 ~~~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
...+...+..+..++..+..+|+.|+..-
T Consensus 45 ~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 45 REKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555666677788888888888887653
No 93
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=34.04 E-value=4.1e+02 Score=25.10 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHh-hhhhHHhHHHhHHHHHHhHhhhh
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRT--------DLDKHLLQLQK-SAEVLDIVKADSDHMLSNVRSTS 105 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~--------~~~~~l~~L~~-~~~~l~~~~~~~~~l~~~i~~~~ 105 (745)
.++...+..+..+...+..+|..++.+-+ .+...+..|+. ++..|+.+.+.-..+.+.|.++.
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin 105 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55555555666666666666666555433 22233444443 44566666666666666666554
No 94
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.74 E-value=4.6e+02 Score=27.66 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHH
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLA 121 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~ 121 (745)
+++.++.+..+.+++++++.++++--.+-+...+.|..|+.++| .-..+++.++.-.+ .+=+.=-.|.|-||-.
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP---AfmdEyEklE~EL~---~lY~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRP---AFMDEYEKLEEELQ---KLYEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHH---HHHHHHHHHHHhHHHH
Q ss_pred HhHHHH
Q 004552 122 QSRVND 127 (745)
Q Consensus 122 ~~rv~~ 127 (745)
.+.+.+
T Consensus 252 e~qle~ 257 (267)
T PF10234_consen 252 EHQLEE 257 (267)
T ss_pred HHHHHH
No 95
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=32.78 E-value=45 Score=35.93 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL 77 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l 77 (745)
++.+|.+.|..|+.-.+.+...+..+...-.+++.+|
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L 65 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDL 65 (326)
T ss_dssp -------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888887777666666554
No 96
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.74 E-value=9.5e+02 Score=29.10 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004552 45 MTRLLHECIAYQRALDVDLDSLLSQRT 71 (745)
Q Consensus 45 i~~~l~~l~~~~~~~~~~L~~~~~~~~ 71 (745)
++..|.+++.+...+..++..+++.++
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444454444444443
No 97
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=32.54 E-value=1.2e+03 Score=29.86 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 004552 51 ECIAYQRALDVDL 63 (745)
Q Consensus 51 ~l~~~~~~~~~~L 63 (745)
.+..+...+..++
T Consensus 837 ~l~~~~~~l~~~~ 849 (1164)
T TIGR02169 837 ELQEQRIDLKEQI 849 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 98
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=32.41 E-value=1e+03 Score=29.29 Aligned_cols=192 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhH
Q 004552 42 VGA-MTRLLHECIAYQRALDVDLDSLLSQRT--DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVREL 118 (745)
Q Consensus 42 ~~~-i~~~l~~l~~~~~~~~~~L~~~~~~~~--~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~L 118 (745)
+.+ .......+..+...+...|-.-++.+. .....|.++..+...+..++....++.....+....+.++... |
T Consensus 200 ~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~---L 276 (806)
T PF05478_consen 200 LVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDG---L 276 (806)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHHhHHHHHHHH----------------------HHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC----
Q 004552 119 DLAQSRVNDTLLR----------------------IDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK---- 172 (745)
Q Consensus 119 D~~~~rv~~t~~~----------------------V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~---- 172 (745)
...|+++..++.- .+++-+....+++++..++.+=...+-....++.++|+.+.
T Consensus 277 ~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~ 356 (806)
T PF05478_consen 277 RGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTS 356 (806)
T ss_pred HHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHHHHHHH
Q 004552 173 DSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGYLKKVI 237 (745)
Q Consensus 173 ~~~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~yv~~~i 237 (745)
...++....|++..+.+.... +.+..-+...=.+.....-+-.......-+.-+.|.-|++-++
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a-~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil 420 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQA-KQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIVGLIL 420 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
No 99
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=32.23 E-value=4.1e+02 Score=24.55 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.6
Q ss_pred ccccHHHHHHHHHHHHc
Q 004552 150 DEENFEAAAKFVQRFVE 166 (745)
Q Consensus 150 ~~~d~e~AA~~i~r~l~ 166 (745)
..+|+++||..|.|+-.
T Consensus 101 t~~Dl~gA~~~l~RLQ~ 117 (134)
T PF08336_consen 101 TEEDLEGAAEGLLRLQD 117 (134)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 35899999999999954
No 100
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.04 E-value=1.4e+02 Score=23.80 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHhhhhHHHHHHhhccccHHHHHHHHHHHHc
Q 004552 136 VDRNNCLDGVKTALDEENFEAAAKFVQRFVE 166 (745)
Q Consensus 136 ~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~ 166 (745)
+|..|.+.-|.+-++-++|+.|..||..+..
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6778899999999999999999999998853
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.67 E-value=8.7e+02 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=13.7
Q ss_pred hHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHH
Q 004552 86 VLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLA 121 (745)
Q Consensus 86 ~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~ 121 (745)
.+..+.....+..+.+.+.-.-...+-.+|.+|...
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333323333444444444444
No 102
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.44 E-value=6.1e+02 Score=26.29 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHh
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQS 123 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~ 123 (745)
+++.-..+|......++.=....++++.++.....++......+..+.. .|...+...+ .-|.+....-.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~---~l~~~L~~~a-------~~~~~~s~~l~ 124 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEG---ELAEPLEGVS-------ACIGNCSTALE 124 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHH-------HHHHHHHHHHH
Confidence 4555555566666666666666666665565555455554444444332 2222222111 22222222222
Q ss_pred HHHH--HHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHccccccCCCCccHHHHHHHHHHHHHHHHHHH
Q 004552 124 RVND--TLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKR 196 (745)
Q Consensus 124 rv~~--t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~i~~~~~~~~~~~~~~L~~~~~~L~~~~~~~ 196 (745)
.+.+ ...++..++++-.+++.+...|+. -|||+...++. +.. +-...|+.=.++++..+ +.
T Consensus 125 ~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~----~rr-------e~~~kLe~~ie~~~~~v-e~ 192 (240)
T cd07667 125 ELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVA----LRK-------EERPKVPTDVEKCQDRV-EC 192 (240)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHH-HH
Confidence 2333 246899999999999999999974 57999888762 110 11233333345555555 66
Q ss_pred HHHHHH
Q 004552 197 VLAAVD 202 (745)
Q Consensus 197 F~~A~~ 202 (745)
|++.+.
T Consensus 193 f~~~~~ 198 (240)
T cd07667 193 FNADLK 198 (240)
T ss_pred HHHHHH
Confidence 666654
No 103
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=31.26 E-value=5.8e+02 Score=25.96 Aligned_cols=118 Identities=15% Similarity=0.234 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 43 GAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 43 ~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
.+....+..|+.....+...++.++..+.++...+..+......|..... ...|.+.++..+++.++|+. +...
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~-~~~Ls~al~~la~~~~ki~~----~~~~- 88 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEE-HTSLSRALSQLAEVEEKIEQ----LHGE- 88 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHH----HHHH-
Confidence 34556667777777777788888888887777777777776555655432 33566666666655555543 3222
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHHc
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFVE 166 (745)
Q Consensus 123 ~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l~ 166 (745)
.--+++..+.+-+.+--.-+..|..++.. ..|..|...+.+...
T Consensus 89 qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~ 137 (224)
T cd07623 89 QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKRE 137 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444433344444455542 456666666665543
No 104
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.25 E-value=4.3e+02 Score=24.49 Aligned_cols=110 Identities=8% Similarity=0.058 Sum_probs=47.9
Q ss_pred cccccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhH-
Q 004552 23 SAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNV- 101 (745)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i- 101 (745)
++++|+++..-.. .+++++|...++.|...+.+.-++..+.-. .++..|.++..+...+........+....-
T Consensus 13 ss~sfaA~~~~~v---~~~l~~LEae~q~L~~kE~~r~~~~k~~ae---~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~ 86 (126)
T PF09403_consen 13 SSISFAATATASV---ESELNQLEAEYQQLEQKEEARYNEEKQEAE---AAEAELAELKELYAEIEEKIEKLKQDSKVRW 86 (126)
T ss_dssp ----------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred HHHHHHcccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHhcchhH
Confidence 4677777761111 124777888888888777777666554322 334444333333323333332222221110
Q ss_pred --hhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHh
Q 004552 102 --RSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDR 138 (745)
Q Consensus 102 --~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~L 138 (745)
..=.+++.+-.+=.+.||.....-++.+.-.+.+..+
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~~ 125 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQSL 125 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0012333333444566666666666666665555443
No 105
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.76 E-value=5.6e+02 Score=25.69 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=62.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHH--hhc--cccHHHHHHHHHHHH--ccccccCCCCccHHHHHHHHHHHHHH
Q 004552 118 LDLAQSRVNDTLLRIDAIVDRNNCLDGVKT--ALD--EENFEAAAKFVQRFV--EIDNKYKDSGSDQREQLLTAKKQLEG 191 (745)
Q Consensus 118 LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~--al~--~~d~e~AA~~i~r~l--~i~~~~~~~~~~~~~~L~~~~~~L~~ 191 (745)
++.+..+++++.+.|..+..+=.-+..+-. ... .+.|-.|.....-+. .+|+...-+. +|..-|...++ +-+
T Consensus 45 ~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V-~~~~YilGl~D-~vG 122 (204)
T COG2178 45 FEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGV-PPIAYILGLAD-AVG 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCC-CHHHHHHHHHH-HHH
Confidence 888889999998888855533333333332 232 256777655554442 2332211111 24555555555 667
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhcccC
Q 004552 192 IVKKRVLAAVDQRDHGTILRFIKLYSPL 219 (745)
Q Consensus 192 ~~~~~F~~A~~~~D~~~v~r~fKLfp~i 219 (745)
.+.+.+-++.++|+.+..++|+++..-+
T Consensus 123 ELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 123 ELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7779999999999999999999887655
No 106
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.67 E-value=8.5e+02 Score=27.70 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHH
Q 004552 50 HECIAYQRALDVDLDSLLSQ---RTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVN 126 (745)
Q Consensus 50 ~~l~~~~~~~~~~L~~~~~~---~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~ 126 (745)
+.|-.+.+.+..+++.+... ...++.++..|.+ +-..+.++.+...+.++.--+-.+.-.+++++|..
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~e---k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~------ 337 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLRE---KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKS------ 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHH------
Confidence 44444444444444443332 2233344434433 44455555555555444333222222333333332
Q ss_pred HHHHHH-HHHHHhhhhHHHHHHhhccc
Q 004552 127 DTLLRI-DAIVDRNNCLDGVKTALDEE 152 (745)
Q Consensus 127 ~t~~~V-~~v~~Lk~~~~~v~~al~~~ 152 (745)
-++.+ +.+..|+...++++.-+.++
T Consensus 338 -eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 338 -EIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 22333 25666777777777666543
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=30.26 E-value=6.2e+02 Score=25.98 Aligned_cols=58 Identities=9% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHh
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVR 102 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~ 102 (745)
+..++.-+.....+.......|...-.....++..+..|++ ++..+-.+.......+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~r---ri~~lE~~le~~eerL~ 60 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQR---RIQLLEEELERAEERLE 60 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHH
Confidence 45666767777777777788888777777777777766666 55555555555554444
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.17 E-value=6.4e+02 Score=26.13 Aligned_cols=108 Identities=8% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHH
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLA 121 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~ 121 (745)
.+.+.+.+..++.+...++++...+=..=..+.+++....... .-......+..|..-++....-...+...+..|+.+
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~ 118 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEE 118 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHH-HHHHhhhhHHHHHHhhc
Q 004552 122 QSRVNDTLLRID-AIVDRNNCLDGVKTALD 150 (745)
Q Consensus 122 ~~rv~~t~~~V~-~v~~Lk~~~~~v~~al~ 150 (745)
+.+++.=+.-+. .+..+..++.....+++
T Consensus 119 ~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 119 IEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=30.11 E-value=6.3e+02 Score=26.64 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=12.6
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHH
Q 004552 34 AYVRTLTDVGAMTRLLHECIAYQR 57 (745)
Q Consensus 34 ~~~~~l~~~~~i~~~l~~l~~~~~ 57 (745)
..+..+.-+..+++.+.++.-+.+
T Consensus 48 ~l~s~L~QIt~iQaeI~q~nlEie 71 (277)
T PF15003_consen 48 DLFSRLRQITNIQAEIDQLNLEIE 71 (277)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355555556666666654444333
No 110
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.99 E-value=7.5e+02 Score=28.68 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-----hHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhh---hhhHHHHh
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQ-RT-----DLDKHLLQLQKSAEVLDIVKADSDHMLSNVRST---SDLADQVS 112 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~-~~-----~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~---~~~A~~is 112 (745)
+..+...+..+..+....+..++-+-.. .| .++..-..+..+...+..+.++.+.+...+... -.....+.
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~ 336 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQS 336 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776655210 11 111001122222224455555555555555422 22233344
Q ss_pred HHHHhHHHHHhHHHHHH-HHHHHHHHhhhhHHHHHHhh
Q 004552 113 RKVRELDLAQSRVNDTL-LRIDAIVDRNNCLDGVKTAL 149 (745)
Q Consensus 113 ~kVr~LD~~~~rv~~t~-~~V~~v~~Lk~~~~~v~~al 149 (745)
.++..+.........++ ..++....+++.+..++...
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~ 374 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555544444444444 23345556666666665553
No 111
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.20 E-value=3.8e+02 Score=26.90 Aligned_cols=95 Identities=12% Similarity=0.188 Sum_probs=55.8
Q ss_pred hHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHHHHccccccC-CCCccHHHHHHHH
Q 004552 107 LADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYK-DSGSDQREQLLTA 185 (745)
Q Consensus 107 ~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~-~~~~~~~~~L~~~ 185 (745)
++...+.-+|.||.|.+--++...+|+. |+++++.||+.-|...--.+ .-.++..+- .-...-+.++.+.
T Consensus 17 ~frgf~~tLkalD~E~~~~Ke~~frvdr------ivdq~~~a~q~~Dl~aLr~~---W~~l~~r~Fs~Le~~y~~~~~kl 87 (241)
T KOG1333|consen 17 LFRGFTHTLKALDAEIKADKEKGFRVDR------IVDQLQQAMQVYDLAALRDY---WSYLERRLFSRLEDIYRPTIHKL 87 (241)
T ss_pred HHhhHHHHHHHHhHHHhhhhhcCCcHHH------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHH
Confidence 4556667799999999999999999994 77888888887665321111 111111110 0001123444444
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004552 186 KKQLEGIVKKRVLAAVDQRDHGTILRFI 213 (745)
Q Consensus 186 ~~~L~~~~~~~F~~A~~~~D~~~v~r~f 213 (745)
..+|-..++ -.+++.+..+.+..||
T Consensus 88 e~Sl~r~yL---V~~~q~nr~~K~~EFF 112 (241)
T KOG1333|consen 88 ETSLFRFYL---VYTIQTNRNDKAQEFF 112 (241)
T ss_pred HHHHHHHHH---hhhhhcCChHHHHHHH
Confidence 444433332 2677888887776665
No 112
>PRK01156 chromosome segregation protein; Provisional
Probab=28.75 E-value=1.2e+03 Score=28.94 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004552 155 EAAAKFVQRFV 165 (745)
Q Consensus 155 e~AA~~i~r~l 165 (745)
..+...+.++.
T Consensus 732 ~~~~~~l~~~r 742 (895)
T PRK01156 732 KKAIGDLKRLR 742 (895)
T ss_pred HHHHHHHHHHH
Confidence 33333334443
No 113
>PRK10132 hypothetical protein; Provisional
Probab=28.74 E-value=4.4e+02 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRT 71 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~ 71 (745)
+.++++....+|..+.+.+-..++.+++...
T Consensus 6 ~~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~ 36 (108)
T PRK10132 6 NRNDVDDGVQDIQNDVNQLADSLESVLKSWG 36 (108)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888888888887776555
No 114
>PRK11637 AmiB activator; Provisional
Probab=28.41 E-value=6.6e+02 Score=28.27 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004552 45 MTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL 77 (745)
Q Consensus 45 i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l 77 (745)
+++.+..+..+..++..+++...++-..+++++
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344443333333333333
No 115
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=1e+03 Score=27.80 Aligned_cols=190 Identities=11% Similarity=0.113 Sum_probs=110.4
Q ss_pred ccHhhHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHhhhhhHHhHHHhHHHH
Q 004552 28 GTADALAYVRTLTD--VGAMTRLLHECIAYQRALDVDLDSLLSQRTD----LDKHL----LQLQKSAEVLDIVKADSDHM 97 (745)
Q Consensus 28 ~~~~~~~~~~~l~~--~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~----~~~~l----~~L~~~~~~l~~~~~~~~~l 97 (745)
+.|++...+.++++ ++++++.=..|..+.+.++.++..+...... ..+.. .+.++...++........++
T Consensus 17 ~~~~~~~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L 96 (581)
T KOG2069|consen 17 NSPEMDAYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPEL 96 (581)
T ss_pred cCchhHHHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHh
Confidence 77888899999998 9999998888888888888888877665551 11111 22333333444444444555
Q ss_pred HHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHH---HHHHHHHHccccccC--
Q 004552 98 LSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAA---AKFVQRFVEIDNKYK-- 172 (745)
Q Consensus 98 ~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~A---A~~i~r~l~i~~~~~-- 172 (745)
.+.+.+.. .+-..++..++-.+.++++-.++.++-.--+-...+++.+.|++| +.++.|...--+...
T Consensus 97 ~s~~~~f~-------~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi 169 (581)
T KOG2069|consen 97 TSPCKRFQ-------DFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVI 169 (581)
T ss_pred hhHHHHHH-------HHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHH
Confidence 55555544 334455566666777777777777776666666678887777775 334444433222221
Q ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhcccCCcchhhHHHHHHH
Q 004552 173 -DSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSPLGIEEEGLQVYVGY 232 (745)
Q Consensus 173 -~~~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ig~~~eGl~~y~~y 232 (745)
.-..+..++....-++|...+..-|.-... =.+..|.+.-+.+|... .+.+|
T Consensus 170 ~~i~~~v~~tv~~ll~qL~~~l~~pl~l~~c----irvv~ylr~~~~~t~~~----LRl~f 222 (581)
T KOG2069|consen 170 QEIATEVEQTVQKLLEQLIQQLRTPLQLPEC----IRVVGYLRRMAVLTENQ----LRLKF 222 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHhhhhh----HHHHH
Confidence 112234555555555555555444443222 23344555556665533 35555
No 116
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.77 E-value=8e+02 Score=30.92 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh----hhhhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHH
Q 004552 51 ECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK----SAEVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVN 126 (745)
Q Consensus 51 ~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~----~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~ 126 (745)
.|..+.....+++..+-.+...+.+.|.++.+ +..++..+.........-+.+..+.|+.-.-++..++.+.+.+.
T Consensus 665 ~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~ 744 (1074)
T KOG0250|consen 665 DLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIK 744 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHH
Confidence 44444444444444444444444444433322 22244444444444444444444434555566777777777777
Q ss_pred HHHHHHHH----HHHhhhhHHHHH
Q 004552 127 DTLLRIDA----IVDRNNCLDGVK 146 (745)
Q Consensus 127 ~t~~~V~~----v~~Lk~~~~~v~ 146 (745)
...+-|+. +.++++++..+.
T Consensus 745 ~~~~eIe~~~~~~e~l~~e~e~~~ 768 (1074)
T KOG0250|consen 745 KKEKEIEEKEAPLEKLKEELEHIE 768 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766662 455566655554
No 117
>PRK01156 chromosome segregation protein; Provisional
Probab=27.44 E-value=1.2e+03 Score=29.06 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHhhc
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALD 150 (745)
Q Consensus 123 ~rv~~t~~~V~~v~~Lk~~~~~v~~al~ 150 (745)
.++..++..+..+......+..+..+++
T Consensus 719 ~~~~~~~~~l~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 719 NDINETLESMKKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333334444433
No 118
>PRK03918 chromosome segregation protein; Provisional
Probab=27.01 E-value=1.1e+03 Score=28.99 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=11.8
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHH
Q 004552 36 VRTLTDVGAMTRLLHECIAYQRALDV 61 (745)
Q Consensus 36 ~~~l~~~~~i~~~l~~l~~~~~~~~~ 61 (745)
++.+..++.+.+....+.........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (880)
T PRK03918 151 VRQILGLDDYENAYKNLGEVIKEIKR 176 (880)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444333333333
No 119
>PHA03332 membrane glycoprotein; Provisional
Probab=26.98 E-value=1.1e+03 Score=29.72 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.7
Q ss_pred HHHHHHHHHcccccc
Q 004552 157 AAKFVQRFVEIDNKY 171 (745)
Q Consensus 157 AA~~i~r~l~i~~~~ 171 (745)
||.|-+++.++...+
T Consensus 981 aalyYQQlnsltnqv 995 (1328)
T PHA03332 981 AALYYQQLNSLTNQV 995 (1328)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 120
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.97 E-value=1.1e+03 Score=27.71 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=7.2
Q ss_pred HHHHhhhhHHHHHHhh
Q 004552 134 AIVDRNNCLDGVKTAL 149 (745)
Q Consensus 134 ~v~~Lk~~~~~v~~al 149 (745)
+...+...+..+...|
T Consensus 223 n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 223 NLEKLRELSQNALAAL 238 (563)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3333333555555555
No 121
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.80 E-value=9.4e+02 Score=30.44 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhcCCCccccchhHHHHHhhhHHHH--------HHHHHHHHHH
Q 004552 460 ISSVIAVLSSASSLLSNEYQEALQQKTRE--PNLGAKLFLGGVGVQKTGTEIATALNNMDVS--------SEYVLKLKHE 529 (745)
Q Consensus 460 ~~~~~a~ln~~~~~L~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~LNn~~~s--------~~y~~~L~~~ 529 (745)
-.+.|.++-.++..+...|.+.+..-++. +.+ +.+. ..|+ +..++-.++++=.| ..|+..+.+.
T Consensus 659 K~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l--~f~f-hdgV---R~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~ 732 (1075)
T KOG2171|consen 659 KETACEALGEYAKELKEAFAPYVEQVVELMVPLL--KFYF-HDGV---RKAAAESMPQLLTCALKACQGGPEYLKQLWEA 732 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH--Hhhh-hhHH---HHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 56889999999888887877766555441 111 1100 0111 33344444433322 2256666666
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHhhhhCchhhhhh----hc-ccccccChHhhhhh
Q 004552 530 IEEQCAEVFPTPADREKVKSCLSELGDLSKMFK--QILNMGMEQLVATVTPRIRPVLDS----VA-TISYELSEAEYADN 602 (745)
Q Consensus 530 l~~~~~~~f~~~~d~~~~~s~l~~l~~~~~~f~--~ll~~~i~~L~~~i~~rl~~~l~~----~~-~~~y~l~e~ey~~~ 602 (745)
+....-+.-....|.+.+...++.|..+...+- .+-..+++.+...+.-++...... .. +..++-+++|+...
T Consensus 733 ~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~ 812 (1075)
T KOG2171|consen 733 IRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL 812 (1075)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 655544444445566677777777665555443 233456666555555444444422 22 13333333333333
Q ss_pred ccCCh-HHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHH
Q 004552 603 EVNDP-WVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVK 645 (745)
Q Consensus 603 e~~d~-~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~ 645 (745)
..+|. ...++...+-.++..++..+.+. |+.|.-.++..+..
T Consensus 813 ~e~d~~ll~~i~~i~~~l~k~~k~~f~p~-f~~~~p~iv~~l~~ 855 (1075)
T KOG2171|consen 813 DEQDAYLLDAISDILAALAKALKGSFLPF-FENFLPLIVKLLKS 855 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccccccHH-HHHHHHHHHHHHhc
Confidence 33444 44778888888888888877754 77777666666543
No 122
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.72 E-value=4.3e+02 Score=27.26 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK 82 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~ 82 (745)
.++.+......+......+|.+|+-..++|.+++.-|..|..
T Consensus 114 kI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~ 155 (254)
T KOG2196|consen 114 KISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLET 155 (254)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555666666666666666666655544444
No 123
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.49 E-value=4.3e+02 Score=23.57 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=13.0
Q ss_pred HHhHHHHHHhHhhhhhhHHHHhHHHHhHHH
Q 004552 91 KADSDHMLSNVRSTSDLADQVSRKVRELDL 120 (745)
Q Consensus 91 ~~~~~~l~~~i~~~~~~A~~is~kVr~LD~ 120 (745)
..+.+.+...+++....-..++.+|+.++.
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444444333334444444443
No 124
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=26.36 E-value=2.1e+02 Score=26.26 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=50.5
Q ss_pred HHHHhhccccHHHHHHHHHHHHccccccCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q 004552 144 GVKTALDEENFEAAAKFVQRFVEIDNKYKD-----SGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSP 218 (745)
Q Consensus 144 ~v~~al~~~d~e~AA~~i~r~l~i~~~~~~-----~~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ 218 (745)
....|++.+|++++..++.|+..|-.++.. .+.+....| ..|..-+.++.-+|..++|.+.+...-+++-.
T Consensus 37 ~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL----~~LY~y~~~~L~~An~~~d~~~l~ev~~~l~~ 112 (124)
T TIGR00208 37 LAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASL----GALYDYMYRRLVQANIKNDTSKLAEVEGYVRD 112 (124)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHH----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 344677789999999999999887766541 123334444 44666667888899999999877766665544
Q ss_pred C
Q 004552 219 L 219 (745)
Q Consensus 219 i 219 (745)
+
T Consensus 113 L 113 (124)
T TIGR00208 113 F 113 (124)
T ss_pred H
Confidence 4
No 125
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.88 E-value=9.6e+02 Score=31.03 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccccccccccHhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHH
Q 004552 19 NDESSAVKFGTADALAYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHML 98 (745)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~ 98 (745)
++.+.+|.-|++.....+..-..+.++...+..+..+......++..+-.....+...+..+.. .+..+..+...+.
T Consensus 646 ~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 722 (1163)
T COG1196 646 VEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRR---QLEELERQLEELK 722 (1163)
T ss_pred EeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred HhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHH-HHHHhhhhHHHHHHhh
Q 004552 99 SNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRID-AIVDRNNCLDGVKTAL 149 (745)
Q Consensus 99 ~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~-~v~~Lk~~~~~v~~al 149 (745)
..++..-.--.++-++++.++.+...+...+..++ .+-.++..+..+...+
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 126
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=25.57 E-value=8.2e+02 Score=25.85 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 004552 50 HECIAYQRALDVDLDSLLSQRT 71 (745)
Q Consensus 50 ~~l~~~~~~~~~~L~~~~~~~~ 71 (745)
..++++..++.-++..+-....
T Consensus 57 t~iQaeI~q~nlEielLkleKe 78 (277)
T PF15003_consen 57 TNIQAEIDQLNLEIELLKLEKE 78 (277)
T ss_pred HHHHHHHHhhhHHHHHHHhhcc
Confidence 3445555555555554444333
No 127
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=25.11 E-value=2.9e+02 Score=25.08 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHhhccccHHHHHHHHHHHHccccccC---CC--CccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHhccc
Q 004552 144 GVKTALDEENFEAAAKFVQRFVEIDNKYK---DS--GSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKLYSP 218 (745)
Q Consensus 144 ~v~~al~~~d~e~AA~~i~r~l~i~~~~~---~~--~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKLfp~ 218 (745)
....+++.+|++.+..++.|+..|-.++. +. +.+....| ..|..-+.++.-+|..++|.+.+...-+++-.
T Consensus 35 ~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L----~~lY~y~~~~L~~A~~~~d~~~l~~v~~~l~~ 110 (122)
T PF02561_consen 35 QAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNL----FRLYDYMIRQLVQANLKKDPERLDEVIRILEE 110 (122)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33457779999999999999988777654 11 22334444 34555555667778888998777655544433
No 128
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=24.96 E-value=1.5e+03 Score=28.78 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004552 442 DVFYVL 447 (745)
Q Consensus 442 Dvf~il 447 (745)
.++-++
T Consensus 1131 ~~~~~~ 1136 (1179)
T TIGR02168 1131 RFANLL 1136 (1179)
T ss_pred HHHHHH
Confidence 333333
No 129
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=24.90 E-value=7.5e+02 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHHHccc
Q 004552 152 ENFEAAAKFVQRFVEID 168 (745)
Q Consensus 152 ~d~e~AA~~i~r~l~i~ 168 (745)
.+|+.|-..+.+.+...
T Consensus 133 ~~~enA~k~L~KaR~~~ 149 (218)
T cd07662 133 VDYENANKALDKARAKN 149 (218)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 68999999999887663
No 130
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=24.80 E-value=6.6e+02 Score=24.50 Aligned_cols=60 Identities=17% Similarity=0.326 Sum_probs=42.6
Q ss_pred hhHHHHHHhhccccHHHHHHHHHHHHccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004552 140 NCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVD 202 (745)
Q Consensus 140 ~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~~~~~~~~L~~~~~~L~~~~~~~F~~A~~ 202 (745)
-|+..+.-++..+||..+..++.++.++++.-.+ .+.+..| +..+-|..+-.++|..|++
T Consensus 75 ~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d--~~~~nrl-k~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 75 MCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD--WERRNRL-KVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch--HHHHHHH-HHHHHHHHHHhchHHHHHH
Confidence 4777778899999999999999999988876211 1122222 4556677777788887765
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.67 E-value=6.4e+02 Score=28.35 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=40.0
Q ss_pred cHhhHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhh
Q 004552 29 TADALAYVRTLT-DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDL 107 (745)
Q Consensus 29 ~~~~~~~~~~l~-~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~ 107 (745)
.|+..+.++.+. ++.+|...=..+..+..+++..+.....++..+++.+.+=+.+..++ ..+...-.....+-...
T Consensus 156 ~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l---~~~l~~~q~~l~eL~~~ 232 (420)
T COG4942 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL---NSELSADQKKLEELRAN 232 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH
Confidence 344445554333 33333333334444444444444444444444443333322221222 22222222222222334
Q ss_pred HHHHhHHHHhHHHHHhHHHHHHHH
Q 004552 108 ADQVSRKVRELDLAQSRVNDTLLR 131 (745)
Q Consensus 108 A~~is~kVr~LD~~~~rv~~t~~~ 131 (745)
+.++...|.++..+-.++.+..+.
T Consensus 233 ~~~L~~~Ias~e~~aA~~re~~aa 256 (420)
T COG4942 233 ESRLKNEIASAEAAAAKAREAAAA 256 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444443
No 132
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.42 E-value=9e+02 Score=26.14 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=58.6
Q ss_pred HHHHhcccCCcc---------hhhHHHHHHHHHHHHHHHHHHhHHHHH-Hhhhh-----------------hccCCc---
Q 004552 211 RFIKLYSPLGIE---------EEGLQVYVGYLKKVIGMRWRMEYDNLV-ELMEQ-----------------SQDQNQ--- 260 (745)
Q Consensus 211 r~fKLfp~ig~~---------~eGl~~y~~yv~~~i~~~ar~~l~~~~-~~~~~-----------------~~~~~~--- 260 (745)
|..-+||+-.+. +.||.-.+.|.....+.-+|+.++... +.... .+-+.+
T Consensus 214 rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi 293 (412)
T KOG2297|consen 214 RLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVI 293 (412)
T ss_pred HHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEE
Confidence 444556665543 779999999999998888888776522 22211 111111
Q ss_pred ccHHHHHHHHHH----------HHHHHHHHhHHHHHhhhCcccHH-HHHHHHHHHHHHH
Q 004552 261 VNFVGCLTNLFK----------DIVLAIEENDEILRGLCGEDGIV-YAICELQEECDSR 308 (745)
Q Consensus 261 ~~~~~~L~~Lfe----------~ia~ii~~h~~iI~~~yg~~~m~-~vi~~lq~e~d~q 308 (745)
...-++++...+ .+.+-+.+..|++..+...|++. .+|.++|..|-.-
T Consensus 294 ~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen 352 (412)
T KOG2297|consen 294 GIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYEN 352 (412)
T ss_pred eeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 122233333332 33444667778887777777654 6788888888643
No 133
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.33 E-value=2.9e+02 Score=25.68 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=51.3
Q ss_pred hHHHHHHhhccccHHHHHHHHHHHHccccccCCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 004552 141 CLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDS-----GSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRFIKL 215 (745)
Q Consensus 141 ~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~-----~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~v~r~fKL 215 (745)
++.....|++.+|++.+..++.++..|-.++..+ +.+....| ..|..-+.++.-+|...+|.+.+...-++
T Consensus 38 ~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L----~~LY~y~~~~L~~A~~~~d~~~l~ev~~i 113 (132)
T PRK05685 38 FLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNL----SALYDYMIRRLLEANLRNDVQAIDEVEGL 113 (132)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3334456778899999999999998887765511 22333444 44666666888889999998877655555
Q ss_pred cccC
Q 004552 216 YSPL 219 (745)
Q Consensus 216 fp~i 219 (745)
+-.+
T Consensus 114 l~~L 117 (132)
T PRK05685 114 LREI 117 (132)
T ss_pred HHHH
Confidence 4444
No 134
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=24.02 E-value=6e+02 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHH
Q 004552 608 WVQRLLHAVETNAAWLQPLMTANNYDSFVHLIIDFIVKRLEVIM 651 (745)
Q Consensus 608 ~~~~f~~~~~~l~~~~~~~Lt~~n~~~ll~~~~~~l~~~lE~~i 651 (745)
.+.-+...++.-+.-+...|++.+|..++..+-..+...+|+.+
T Consensus 3 ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~ll 46 (137)
T PF10540_consen 3 AIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELL 46 (137)
T ss_dssp HHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888889999999999999999888999999977
No 135
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=23.74 E-value=90 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.9
Q ss_pred hhhhHHHHHHhhccccHHHHHHHHHHHH
Q 004552 138 RNNCLDGVKTALDEENFEAAAKFVQRFV 165 (745)
Q Consensus 138 Lk~~~~~v~~al~~~d~e~AA~~i~r~l 165 (745)
++.|...+..++..+||+.|+..+.++.
T Consensus 113 ~~~~~~~l~~~~~~~d~~~A~~~~~kLk 140 (157)
T TIGR00714 113 FQTRHQLLVEQLDNQTWAAAADYTRKLR 140 (157)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567888888999999999999999875
No 136
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.26 E-value=5.1e+02 Score=22.70 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=21.4
Q ss_pred HhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHH
Q 004552 88 DIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 88 ~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
..+...+..+...+......-..+...+++||..-..|.+=-+.|.
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555554444444444333
No 137
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.05 E-value=4.1e+02 Score=24.66 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 004552 42 VGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDK 75 (745)
Q Consensus 42 ~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~ 75 (745)
+.++...+..+..+...+..++..+-....++..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444433
No 138
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.01 E-value=6.6e+02 Score=24.30 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhh
Q 004552 40 TDVGAMTRLLHECIA----------YQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTS 105 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~----------~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~ 105 (745)
-|+.++-.+|..+.. +...+..++..+-.+-..+..++..|.. ++..+..++..|.+.+..+-
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~---~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQ---RLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 356666666655553 3444444555444444455555555555 77888888888887765443
No 139
>PRK10698 phage shock protein PspA; Provisional
Probab=22.78 E-value=8.2e+02 Score=24.91 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred HHhhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHHHHHHhHhhhhhhHHH--
Q 004552 34 AYVRTLTDVG-AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSDHMLSNVRSTSDLADQ-- 110 (745)
Q Consensus 34 ~~~~~l~~~~-~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~l~~~i~~~~~~A~~-- 110 (745)
..++..-++. -|+..+..+.....++...+...+..+..+.+++..+.. ....-...+......=. -++|..
T Consensus 17 ~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~---~~~~~e~kA~~Al~~G~--EdLAr~AL 91 (222)
T PRK10698 17 ALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEA---QQVEWQEKAELALRKEK--EDLARAAL 91 (222)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 3445555555 566777777788888877888777777777777766666 34444444444433222 246665
Q ss_pred -----HhHHHHhHHHHHhHHHHHHHHHH-HHHHhhhhHHHHH
Q 004552 111 -----VSRKVRELDLAQSRVNDTLLRID-AIVDRNNCLDGVK 146 (745)
Q Consensus 111 -----is~kVr~LD~~~~rv~~t~~~V~-~v~~Lk~~~~~v~ 146 (745)
...++..|..+........+.+. ++..|++.+....
T Consensus 92 ~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 92 IEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777765544 6777777777665
No 140
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.67 E-value=3.9e+02 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTD 72 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~ 72 (745)
..++|+-.+..|+.+++..|..++..++-+++
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~cD 36 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGCD 36 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCc
Confidence 46789999999999999999999999997774
No 141
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.60 E-value=7.8e+02 Score=24.61 Aligned_cols=117 Identities=13% Similarity=-0.006 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhHHhHHHhHH-HHHHhHhhhhhhHHHHhHHHHhHHHHH
Q 004552 44 AMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQKSAEVLDIVKADSD-HMLSNVRSTSDLADQVSRKVRELDLAQ 122 (745)
Q Consensus 44 ~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~-~l~~~i~~~~~~A~~is~kVr~LD~~~ 122 (745)
+.+..+..+.......-...+.++..+.++...+..+......|........ .+.+.++..+++. .+|+.+-..
T Consensus 8 ~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~----e~i~~~~~~- 82 (198)
T cd07630 8 KERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEAL----EEAKENIEV- 82 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHH----HHHHHHHHH-
Confidence 3455566666666666667777777766666555555554444433322211 3333333222222 334444222
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHH
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFV 165 (745)
Q Consensus 123 ~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l 165 (745)
.--++.+.+-.-+.+--.-+.-+..++.+ .+|+.|-..+.+..
T Consensus 83 ~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar 130 (198)
T cd07630 83 VAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAK 130 (198)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22334444444444444555555566643 68888888888754
No 142
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.35 E-value=3.2e+02 Score=24.37 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=53.3
Q ss_pred hhHHhHHHhHHHHHHhHhhhhhhHHHHhHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhccccHHHHHHHHHH
Q 004552 85 EVLDIVKADSDHMLSNVRSTSDLADQVSRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQR 163 (745)
Q Consensus 85 ~~l~~~~~~~~~l~~~i~~~~~~A~~is~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~~d~e~AA~~i~r 163 (745)
|.++.....++++...+.. +...+..|+...+....+++-++.+-+=..|+..|-.++=..+.+.|...+..
T Consensus 3 ~~~q~~~~~~q~~q~~~~~-------l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~ 74 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQA-------VATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKE 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHH
Confidence 4555666666666654443 34778888998888888888888877777899999888888888887665544
No 143
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=22.25 E-value=9.4e+02 Score=25.63 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=21.0
Q ss_pred ccccHhhHHHhhccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh
Q 004552 26 KFGTADALAYVRTLTDVGAMTRLLHECIAYQRA---LDVDLDSLLSQRT 71 (745)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~i~~~l~~l~~~~~~---~~~~L~~~~~~~~ 71 (745)
--|||---..+.....+..+.+.|.+|..-... ..+.|.+.+...+
T Consensus 177 ~t~~p~p~~d~s~~akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~ 225 (371)
T KOG3958|consen 177 TTGTPRPEQDFSQAAKVAELEKRLTELETVVGCDQDAQNPLSAGLQGAC 225 (371)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhccCCch
Confidence 345542222233444566666666655544333 2223444444444
No 144
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.11 E-value=1.3e+03 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004552 40 TDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHL 77 (745)
Q Consensus 40 ~~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~~l 77 (745)
..+..+++.+....++.++...++.++-.+-.++..++
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455556665665666666665555544444444333
No 145
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=22.05 E-value=7.5e+02 Score=24.15 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.3
Q ss_pred HHHHHH
Q 004552 59 LDVDLD 64 (745)
Q Consensus 59 ~~~~L~ 64 (745)
+...++
T Consensus 61 lNAsIE 66 (213)
T PF00015_consen 61 LNASIE 66 (213)
T ss_dssp HHHHHH
T ss_pred hhhccc
Confidence 333333
No 146
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=21.59 E-value=8.7e+02 Score=24.77 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred hHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----ccHHHHHHHHHHHH
Q 004552 112 SRKVRELDLAQSRVNDTLLRIDAIVDRNNCLDGVKTALDE-----ENFEAAAKFVQRFV 165 (745)
Q Consensus 112 s~kVr~LD~~~~rv~~t~~~V~~v~~Lk~~~~~v~~al~~-----~d~e~AA~~i~r~l 165 (745)
..+++.+...+.. ++...+-+-+.+--..+.-+...+.+ .+|+.|...+.+.+
T Consensus 89 ~Ek~~~l~~r~A~-~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR 146 (218)
T cd07663 89 FEKLRKVEDRVAS-DQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKAR 146 (218)
T ss_pred HHHHHHHHHHHHH-hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554443322 23333333333333334444444432 78999999988887
No 147
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=21.21 E-value=2.1e+02 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 004552 49 LHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK 82 (745)
Q Consensus 49 l~~l~~~~~~~~~~L~~~~~~~~~~~~~l~~L~~ 82 (745)
|..++.+..++|.+|-.+++++..+..++.++..
T Consensus 2 l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~ 35 (74)
T TIGR01808 2 IDTLREEIDRLDAEILALVKRRAEISQAIGKARM 35 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999888876665
No 148
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.18 E-value=5.9e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHhHHHHhHHHHHhHHHHHHHHHH
Q 004552 108 ADQVSRKVRELDLAQSRVNDTLLRID 133 (745)
Q Consensus 108 A~~is~kVr~LD~~~~rv~~t~~~V~ 133 (745)
-..+..++..++.....+..-+..+.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~ 94 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLR 94 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666555555555555544
No 149
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.80 E-value=7.2e+02 Score=23.46 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHh----hhhhHHhHHHhHHHHHHhHhhhhhhHHHHhH
Q 004552 41 DVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDK---HLLQLQK----SAEVLDIVKADSDHMLSNVRSTSDLADQVSR 113 (745)
Q Consensus 41 ~~~~i~~~l~~l~~~~~~~~~~L~~~~~~~~~~~~---~l~~L~~----~~~~l~~~~~~~~~l~~~i~~~~~~A~~is~ 113 (745)
-+.++++-...|..+...+..+|...-......+. ....|++ +-..|.............+..+..-|+...+
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR 115 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFER 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555555555555555554444332221 2223333 2224444444444444445555666777777
Q ss_pred HHHhHHHHHhHHHH
Q 004552 114 KVRELDLAQSRVND 127 (745)
Q Consensus 114 kVr~LD~~~~rv~~ 127 (745)
+|+.|...+.....
T Consensus 116 kv~~le~~~~~~E~ 129 (143)
T PF12718_consen 116 KVKALEQERDQWEE 129 (143)
T ss_pred HHHHHHhhHHHHHH
Confidence 77777765554433
No 150
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=20.75 E-value=1.1e+02 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.5
Q ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHc
Q 004552 139 NNCLDGVKTALDEENFEAAAKFVQRFVE 166 (745)
Q Consensus 139 k~~~~~v~~al~~~d~e~AA~~i~r~l~ 166 (745)
+.|+..+..+++.+||+.|+..+.|+.=
T Consensus 128 ~~~~~~l~~~~~~~d~~~A~~~~~rL~y 155 (173)
T PRK01773 128 QAILTELSTALNSQQWQQASQINDRLRF 155 (173)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577778889999999999999999853
No 151
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.61 E-value=9.4e+02 Score=24.76 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHhHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004552 223 EEGLQVYVGYLKKV-IGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTNLFKDIVLAIEENDEILRG 287 (745)
Q Consensus 223 ~eGl~~y~~yv~~~-i~~~ar~~l~~~~~~~~~~~~~~~~~~~~~L~~Lfe~ia~ii~~h~~iI~~ 287 (745)
+.|-++++.|+-.. =...|+..|..+.+.-.+-. .----..-|+.||..++..|.+.+|.|+.
T Consensus 154 ~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ik--kiEkt~ael~qLfndm~~~V~eq~e~Vd~ 217 (280)
T COG5074 154 VNGQQVFSQALLNANRRGEAKTALAEVQARHQEIK--KIEKTMAELTQLFNDMEELVIEQQENVDV 217 (280)
T ss_pred cchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34555666666442 23445555544332211100 00122345899999999999999998765
No 152
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.13 E-value=73 Score=21.24 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.1
Q ss_pred hccccHHHHHHHHHHHHccccc
Q 004552 149 LDEENFEAAAKFVQRFVEIDNK 170 (745)
Q Consensus 149 l~~~d~e~AA~~i~r~l~i~~~ 170 (745)
+..++|++|-.+..++++++++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 12 FQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHhCCchHHHHHHHHHHHHCcC
Confidence 3478999999999999998875
No 153
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=20.08 E-value=4.4e+02 Score=20.78 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhHHHHHhhhCcccHHHHHHHHHHHHHHHHHH
Q 004552 270 LFKDIVLAIEENDEILRGLCGEDGIVYAICELQEECDSRGCL 311 (745)
Q Consensus 270 Lfe~ia~ii~~h~~iI~~~yg~~~m~~vi~~lq~e~d~q~~~ 311 (745)
+++.+-..+.+|.+.+...+++.+-..+..++..-+......
T Consensus 3 ~~~~i~~~i~~n~~~~~~ll~~~~~~~f~~~l~~~~~~~~~~ 44 (77)
T PF14278_consen 3 FLTEIFEYIYENRDFYKILLSPNGDPNFQERLKELIKEWITE 44 (77)
T ss_pred HHHHHHHHHHHhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 345555668899999999999998888887777765544433
No 154
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=20.06 E-value=1e+03 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.7
Q ss_pred cccccChHhhhhhccCChHHHHHHHHHHHhHHHHhhhc
Q 004552 590 ISYELSEAEYADNEVNDPWVQRLLHAVETNAAWLQPLM 627 (745)
Q Consensus 590 ~~y~l~e~ey~~~e~~d~~~~~f~~~~~~l~~~~~~~L 627 (745)
-+|.+.|-| +.-.+|+.|-...-..|-.+...++..|
T Consensus 311 ~df~l~ele-sfk~fnttwf~e~k~ewa~v~~awkdql 347 (353)
T PF01540_consen 311 EDFSLSELE-SFKSFNTTWFKEMKSEWARVQDAWKDQL 347 (353)
T ss_pred ccccHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666533 2346788898889999999888887665
Done!