Query 004552
Match_columns 745
No_of_seqs 160 out of 280
Neff 7.9
Searched_HMMs 13730
Date Tue Mar 26 18:04:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004552.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1858-1862//hhsearch_scop/004552hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d2sa1 a.118.17.2 (A:525-753) 58.7 3.6 0.00026 16.0 19.0 140 139-292 13-158 (229)
2 d1sr2a_ a.24.10.4 (A:) Sensor- 32.9 9 0.00065 13.3 5.1 61 138-212 44-104 (116)
3 d1nzea_ a.24.18.1 (A:) Oxygen- 24.1 13 0.00092 12.2 8.2 79 123-212 13-96 (112)
4 d2h9da1 a.130.1.1 (A:1-94) Sal 15.5 19 0.0014 11.0 3.9 42 34-82 2-43 (94)
5 d1y6da_ a.24.10.5 (A:) Phospho 15.1 15 0.0011 11.7 -0.1 35 137-171 33-67 (114)
6 d1nexa1 a.157.1.1 (A:116-185) 10.9 26 0.0019 10.1 2.9 25 720-744 46-70 (70)
7 d1ldja2 a.118.17.1 (A:17-410) 10.5 27 0.0019 10.0 11.8 11 270-280 72-82 (394)
8 d2hyec2 a.118.17.1 (C:55-401) 9.5 31 0.0022 9.6 10.1 14 358-371 79-92 (347)
9 d1fpoa2 a.23.1.1 (A:77-171) HS 6.0 56 0.0041 7.9 7.3 27 139-165 50-76 (95)
10 d2gtsa1 a.25.5.1 (A:4-80) Hypo 4.1 89 0.0065 6.4 5.1 54 149-203 3-67 (77)
No 1
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=58.73 E-value=3.6 Score=15.96 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHH
Q ss_conf 644998997425114999999999998021002798---842-899999999999999999999-999729945789987
Q 004552 139 NNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDS---GSD-QREQLLTAKKQLEGIVKKRVL-AAVDQRDHGTILRFI 213 (745)
Q Consensus 139 k~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~---~~~-~~~~L~~~~~~L~~~~~~~F~-~A~~~~D~~~i~r~f 213 (745)
-.-.+.+...+..++|+.|-..+............. .+. ....+....+..+..+..... .....+...++.+..
T Consensus 13 ~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~~~~~~~~~~~v 92 (229)
T d2d2sa1 13 DEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGT 92 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 26618889999986099999999999999973634567532789999999999999999999999985258838999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 73036886235688799899889988888768999986541036775418999999-99999999997379988510862
Q 004552 214 KLYSPLGIEEEGLQVYVGYLKKVIGMRWRMEYDNLVELMEQSQDQNQVNFVGCLTN-LFKDIVLAIEENDEILRGLCGED 292 (745)
Q Consensus 214 KLfp~ig~~~eGl~~y~~yv~~~i~~~ar~~l~~~~~~~~~~~~~~~~~~~~~L~~-Lfe~ia~ii~~h~~iI~~~yg~~ 292 (745)
..+-.+|..+++...|.+.-...+....+. .. ....+..|...|.. .|.+|+.++.+...+ ||+.
T Consensus 93 ~~L~rLg~~~~A~~lfL~~rs~~l~~~i~~--------~~--~~~~~~~Yi~~l~~i~f~~i~~t~~~y~ai----F~~~ 158 (229)
T d2d2sa1 93 ENMIKLGLPEQALDLFLQNRSNFIQDLILQ--------IG--SVDNPTNYLTQLAVIRFQTIKKTVEDFQDI----FKEL 158 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--------C----CCSHHHHHHHHHHHHHHHHHHHHHHHHHH----STTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--------CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCC
T ss_conf 999992883699999999999999999984--------57--689899999999999999999999999999----2899
No 2
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.92 E-value=9 Score=13.27 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 564499899742511499999999999802100279884289999999999999999999999972994578998
Q 004552 138 RNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKYKDSGSDQREQLLTAKKQLEGIVKKRVLAAVDQRDHGTILRF 212 (745)
Q Consensus 138 Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~~~~~~~~~~~L~~~~~~L~~~~~~~F~~A~~~~D~~~i~r~ 212 (745)
+...+..+..++..+||+..+.+.|++......+- ...+.+.+ +.++.+++.+|.+.+...
T Consensus 44 ~p~~l~~L~~a~~~~D~~~l~~~aH~LKGs~~~~G------a~~l~~~~--------~~lE~~~~~~~~~~~~~l 104 (116)
T d1sr2a_ 44 VPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLN------LVPGKQLC--------ETLEHLIREKDVPGIEKY 104 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT------CHHHHHHH--------HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC------CHHHHHHH--------HHHHHHHHHCCHHHHHHH
T ss_conf 19999999999987499999999999988798719------63999989--------999999982899989999
No 3
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=24.08 E-value=13 Score=12.24 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6999999999999985644998997425114999999999998021-0027----9884289999999999999999999
Q 004552 123 SRVNDTLLRIDAIVDRNNCLDGVKTALDEENFEAAAKFVQRFVEID-NKYK----DSGSDQREQLLTAKKQLEGIVKKRV 197 (745)
Q Consensus 123 ~rv~~t~~~V~~i~~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~-~~~~----~~~~~~~~~L~~~~~~L~~~~~~~F 197 (745)
.|+.+|.+.+. .+...+++++|..+-.+||.-..-. ..+. .-+++-+..+.+....|-..+ .++
T Consensus 13 ~ri~~sa~~L~----------~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~l-e~L 81 (112)
T d1nzea_ 13 QRAKVSASEIL----------NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSI-DNL 81 (112)
T ss_dssp HHHHHHHHHHH----------TTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHH----------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 99999998899----------8898882652999999999878789999999987178754699999999999999-999
Q ss_pred HHHHHCCCHHHHHHH
Q ss_conf 999972994578998
Q 004552 198 LAAVDQRDHGTILRF 212 (745)
Q Consensus 198 ~~A~~~~D~~~i~r~ 212 (745)
|.|++.+|......+
T Consensus 82 D~Aar~kd~~~a~~~ 96 (112)
T d1nzea_ 82 DHAAKIKSPTEAEKY 96 (112)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHH
T ss_conf 999974889999999
No 4
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.53 E-value=19 Score=11.01 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7850269999999999999999977999999998423249999999974
Q 004552 34 AYVRTLTDVGAMTRLLHECIAYQRALDVDLDSLLSQRTDLDKHLLQLQK 82 (745)
Q Consensus 34 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~L~~~v~~~~~~~~~l~~L~~ 82 (745)
+.|.++.++.++++ +...+|.+|-.++.++..+...+.++..
T Consensus 2 ~~p~d~~~L~~lR~-------~ID~ID~~i~~LL~~R~~l~~~i~~~K~ 43 (94)
T d2h9da1 2 KTPEDCTGLADIRE-------AIDRIDLDIVQALGRRMDYVKAASRFKA 43 (94)
T ss_dssp CCGGGCCSHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58143667999999-------9999999999999999999999999976
No 5
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=15.05 E-value=15 Score=11.65 Aligned_cols=35 Identities=3% Similarity=0.093 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 85644998997425114999999999998021002
Q 004552 137 DRNNCLDGVKTALDEENFEAAAKFVQRFVEIDNKY 171 (745)
Q Consensus 137 ~Lk~~~~~v~~al~~~d~e~AA~~i~r~l~i~~~~ 171 (745)
++...+..+..++..+||+..+..+|++..-...+
T Consensus 33 ~~~~~~~~L~~a~~~~d~~~l~~~aH~LKGsa~~~ 67 (114)
T d1y6da_ 33 EMDSYIGTLTELQGSEQLLYLKEISHALKSSAASF 67 (114)
T ss_dssp HHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 88999999978776868999999999999999982
No 6
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.85 E-value=26 Score=10.10 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf 6999999998200589966774127
Q 004552 720 LTPAEVRRVLGLRVDFKPEAIALLK 744 (745)
Q Consensus 720 Ls~~e~~~il~lR~Df~~~~i~~l~ 744 (745)
-||+|+|++++...||.+++-.+++
T Consensus 46 kt~eeiR~~f~I~~D~t~eEe~~ir 70 (70)
T d1nexa1 46 RSPEEIRRTFNIVNDFTPEEEAAIR 70 (70)
T ss_dssp CCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 9999999995999999988897639
No 7
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.53 E-value=27 Score=10.02 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=3.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q 004552 270 LFKDIVLAIEE 280 (745)
Q Consensus 270 Lfe~ia~ii~~ 280 (745)
||+.+...+++
T Consensus 72 LY~~l~~~l~~ 82 (394)
T d1ldja2 72 LYKRLKEFLKN 82 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 8
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.48 E-value=31 Score=9.62 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99997589999999
Q 004552 358 LSLMQLGEDYTEFM 371 (745)
Q Consensus 358 s~il~~~~lY~rFl 371 (745)
..+...|+.|...+
T Consensus 79 ~~~~~~W~~~~~~~ 92 (347)
T d2hyec2 79 KKINTCWQDHCRQM 92 (347)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 9
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=6.02 E-value=56 Score=7.85 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 644998997425114999999999998
Q 004552 139 NNCLDGVKTALDEENFEAAAKFVQRFV 165 (745)
Q Consensus 139 k~~~~~v~~al~~~d~e~AA~~i~r~l 165 (745)
+.|+..+..++..+||+.|+..++++.
T Consensus 50 ~~~~~~l~~~~~~~d~~~A~~~~~kLk 76 (95)
T d1fpoa2 50 DTRHQLMVEQLDNETWDAAADTCRKLR 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999870130999999999867
No 10
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=4.12 E-value=89 Score=6.44 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCCC----------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 251149999999999980210027----------98842-89999999999999999999999972
Q 004552 149 LDEENFEAAAKFVQRFVEIDNKYK----------DSGSD-QREQLLTAKKQLEGIVKKRVLAAVDQ 203 (745)
Q Consensus 149 l~~~d~e~AA~~i~r~l~i~~~~~----------~~~~~-~~~~L~~~~~~L~~~~~~~F~~A~~~ 203 (745)
|+.+...+-..|+.|+..+...-. ++..+ .+....+.-..|+..| .+||+|++.
T Consensus 3 mdteevr~fv~hlerfkellndevngls~hf~nl~swqd~~rd~fsevldnlk~tf-nefdea~qe 67 (77)
T d2gtsa1 3 MDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTF-NEFDEAAQE 67 (77)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 64899999999999999999998865887402547664664867999999899888-888899999
Done!