BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004553
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 194/385 (50%), Gaps = 55/385 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 64
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 65 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 122
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 123 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 173
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 174 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 285
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 344
Query: 362 KTICTLEYGAKAKCIIRGPHTPDKI 386
+T+ TLEY +AK I+ P K+
Sbjct: 345 ETLSTLEYAHRAKNILNKPEVNQKL 369
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 193/378 (51%), Gaps = 53/378 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R+R F K S+++ +P ++ + VR AD R
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRK 64
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG------ 145
++ D V + + +D Y+ V + V +G TI YG TG+GK+ TM G
Sbjct: 65 TYTFDMVFGASTKQID-VYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNE 123
Query: 146 --CAKQ---PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
C ++ GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 124 EYCWEEDPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN------ 173
Query: 201 FGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQ 253
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 174 -----PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATL 227
Query: 254 CNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQTA 302
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAG 286
Query: 303 KINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHK 362
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP + +
Sbjct: 287 NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLEE 345
Query: 363 TICTLEYGAKAKCIIRGP 380
T+ TLEY +AK I+ P
Sbjct: 346 TLSTLEYAHRAKNILNKP 363
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYRD 92
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 4 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 63
Query: 93 -FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 64 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 121
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 122 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 172
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 173 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 225
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 226 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 284
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 285 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 343
Query: 362 KTICTLEYGAKAKCIIRGPHTPDK 385
+T+ TLEY +AK I+ P K
Sbjct: 344 ETLSTLEYAHRAKNILNKPEVNQK 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 64
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 65 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 122
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 123 EEYTWEEDPLDGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 173
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 174 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 285
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 344
Query: 362 KTICTLEYGAKAKCIIRGPHTPDK 385
+T+ TLEY +AK I+ P K
Sbjct: 345 ETLSTLEYAHRAKNILNKPEVNQK 368
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 64
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 65 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 122
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 123 EEYTWEEVPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 173
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 174 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 285
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 344
Query: 362 KTICTLEYGAKAKCIIRGPHTPDK 385
+T+ TLEY +AK I+ P K
Sbjct: 345 ETLSTLEYAHRAKNILNKPEVNQK 368
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 64
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 65 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 122
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 123 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 173
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 174 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 226
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 227 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 285
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 286 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 344
Query: 362 KTICTLEYGAKAKCIIRGPHTPDK 385
+T+ TLEY +AK I+ P K
Sbjct: 345 ETLSTLEYAHRAKNILNKPEVNQK 368
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 193/384 (50%), Gaps = 55/384 (14%)
Query: 37 PNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR- 91
PNS+AK+ + I+VV R R F K S+++ +P ++ + VR AD R
Sbjct: 7 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK 66
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP- 150
++ D V + + +D Y+ V + V +G CTI YG TG+GK+ TM G + P
Sbjct: 67 TYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPN 124
Query: 151 -----------GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199
GI+ ++L I +DNG + FS V+V++LEIYNEE++DLL+
Sbjct: 125 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN----- 175
Query: 200 GFGIGWPKGSGSKVRLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKST 252
P S+ RL++ + K I G+E ++ + ++K +R +T
Sbjct: 176 ------PSSDVSE-RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 228
Query: 253 QCNERSSRSHCMIILDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQT 301
N SSRSH + + + T+ G +L LVD+AGSENI ++G A+ +
Sbjct: 229 LMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EA 287
Query: 302 AKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIH 361
INQ + L RV+ ++ HVP+R+SKLT +LQDS +++ ++ SP +
Sbjct: 288 GNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLE 346
Query: 362 KTICTLEYGAKAKCIIRGPHTPDK 385
+T+ TLEY +AK I+ P K
Sbjct: 347 ETLSTLEYAHRAKNILNKPEVNQK 370
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 185/370 (50%), Gaps = 55/370 (14%)
Query: 51 IEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYRD-FSLDGVSLSEEED 105
I+VV R R F K S+++ +P ++ + VR AD R ++ D V + +
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 69
Query: 106 LDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP------------GIV 153
+D Y+ V + V +G CTI YG TG+GK+ TM G + P GI+
Sbjct: 70 ID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEYTWEEDPLAGII 127
Query: 154 YKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKV 213
++L I +DNG + FS V+V++LEIYNEE++DLL+ P S+
Sbjct: 128 PRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN-----------PSSDVSE- 171
Query: 214 RLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRSHCMII 266
RL++ + K I G+E ++ + ++K +R +T N SSRSH +
Sbjct: 172 RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS 231
Query: 267 LDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
+ + T+ G +L LVD+AGSENI ++G A+ + INQ + L RV+
Sbjct: 232 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVI 290
Query: 316 ESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKC 375
++ HVP+R+SKLT +LQDS +++ ++ SP + +T+ TLEY +AK
Sbjct: 291 TALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349
Query: 376 IIRGPHTPDK 385
I+ P K
Sbjct: 350 ILNKPEVNQK 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 55/365 (15%)
Query: 51 IEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVR----ADFGYR-DFSLDGVSLSEEED 105
I+VV R R F K S+++ +P ++ + VR AD R ++ D V + +
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 106 LDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP------------GIV 153
+D Y+ V + V +G CTI YG TG+GK+ TM G + P GI+
Sbjct: 64 ID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEYTWEEDPLAGII 121
Query: 154 YKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKV 213
++L I +DNG + FS V+V++LEIYNEE++DLL+ P S+
Sbjct: 122 PRTLHQIFEKLTDNGTE--FS--VKVSLLEIYNEELFDLLN-----------PSSDVSE- 165
Query: 214 RLEVMGK-KAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRSHCMII 266
RL++ + K I G+E ++ + ++K +R +T N SSRSH +
Sbjct: 166 RLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS 225
Query: 267 LDV----PTVGG-------RLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
+ + T+ G +L LVD+AGSENI ++G A+ + INQ + L RV+
Sbjct: 226 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVI 284
Query: 316 ESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKC 375
++ HVP+R+SKLT +LQDS +++ ++ SP + +T+ TLEY +AK
Sbjct: 285 TALVERTPHVPYRESKLTRILQDSL-GGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343
Query: 376 IIRGP 380
I+ P
Sbjct: 344 ILNKP 348
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 147/296 (49%), Gaps = 39/296 (13%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNG-EKIGFSTFVQVTVL 182
G+ +++ YGPTG+GK+HTM G +QPG++ ++L D+L + G E ++ V ++ L
Sbjct: 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYL 156
Query: 183 EIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKIS----- 237
EIY E++ DLL +G V+ + + I G+ IS
Sbjct: 157 EIYQEKVLDLLDPASGD----------------LVIREDCRGNILIPGLSQKPISSFADF 200
Query: 238 -KEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP---------TVGGRLMLVDMAGSENI 287
+ + R V +T+ N+RSSRSH ++++ V G+L L+D+AGSE+
Sbjct: 201 ERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDN 260
Query: 288 EQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKI 347
+ G G K ++ IN L +VV+++ G VP+RDSKLT LLQDS I
Sbjct: 261 RRTGNKGLRLK-ESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSI 319
Query: 348 LMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHT-----PDKIGAEDSSSAVILG 398
L+ A P+ + T+ L + A++K +I P T P +G S +LG
Sbjct: 320 LIANIA-PERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLG 374
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 48/306 (15%)
Query: 110 YKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP-----------GIVYKSLK 158
Y V I V G CT+ YG TG+GK+HTM G GI+ ++L
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALS 144
Query: 159 DILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVM 218
+ D + ++++ LE+YNEE+ DLLS+++ +K+R+
Sbjct: 145 HLF----DELRMMEVEYTMRISYLELYNEELCDLLSTDDT------------TKIRIFDD 188
Query: 219 GKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRSHCM--IILDVP 270
K K + I G+E + K ++K ++RR +T N +SSRSH + I++ +
Sbjct: 189 STK-KGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR 247
Query: 271 TVG---------GRLMLVDMAGSENIEQAG-QTGFEAKMQTAKINQGNIALKRVVESIAN 320
G G+L LVD+AGSEN+ +AG + G + +T INQ + L RV+ ++ +
Sbjct: 248 ENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVR-ETVNINQSLLTLGRVITALVD 306
Query: 321 GDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGP 380
HVP+R+SKLT LLQ+S ++K ++ SP K+I +T+ TLEY +AK I P
Sbjct: 307 RAPHVPYRESKLTRLLQESL-GGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKP 365
Query: 381 HTPDKI 386
K+
Sbjct: 366 EVNQKL 371
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 146/309 (47%), Gaps = 44/309 (14%)
Query: 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP 150
R F+ D V + F F + I V G TI YG TG+GK+ TM G ++P
Sbjct: 56 RTFTFDAVYDQTSCNYGIFQASF-KPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP 114
Query: 151 GIV---YKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPK 207
G + +K L D + S N + ++ LE+YNEEI DL+ +N
Sbjct: 115 GAIPNSFKHLFDAINSSSSNQNFLVIGSY-----LELYNEEIRDLIKNN----------- 158
Query: 208 GSGSKVRLEVMGKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRS 261
+L + K + ++ G+ A ++S + K R V +TQ N+ SSRS
Sbjct: 159 -----TKLPLKEDKTR-GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRS 212
Query: 262 HCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIAL 311
H + ++ + G+L LVD+AGSE + G TG E ++ AKIN AL
Sbjct: 213 HSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATG-ETLVEGAKINLSLSAL 271
Query: 312 KRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
V+ + G +H+P+RDSKLT LLQDS + SK LM SP +T+ TL Y
Sbjct: 272 GLVISKLVEGATHIPYRDSKLTRLLQDSLGGN-SKTLMCANISPASTNYDETMSTLRYAD 330
Query: 372 KAKCIIRGP 380
+AK I P
Sbjct: 331 RAKQIKNKP 339
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 152/284 (53%), Gaps = 35/284 (12%)
Query: 111 KKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEK 170
K V+S + G + C I YG TGSGK+ T++G PG+ ++ K++ + ++
Sbjct: 77 KYLVQSAVDGYNV---C-IFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKR 132
Query: 171 IGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISG 230
FS ++ ++E+Y + + DLL PK S +++LE+ K +K F+
Sbjct: 133 FSFS--LKAYMVELYQDTLVDLL-----------LPK-SARRLKLEI-KKDSKGMVFVEN 177
Query: 231 IEAGKIS--KEIQKV----EKRRIVKSTQCNERSSRSHCMIILDVPTVG--------GRL 276
+ IS +E++ + +RR V T NE SSRSH ++ + + ++ G+L
Sbjct: 178 VTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKL 237
Query: 277 MLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLL 336
VD+AGSE ++++G G + K + IN+ AL V+ ++++G+ H+P+R+ KLTML+
Sbjct: 238 SFVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLM 296
Query: 337 QDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGP 380
DS + +K LM + SP + +T +L Y ++ + I+ P
Sbjct: 297 SDSLGGN-AKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP 339
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 25/294 (8%)
Query: 93 FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGI 152
F LD V + D F + V++ ++ G I YG TG+GK++TM G A+ PGI
Sbjct: 50 FELDKVFSPQASQQDVFQE--VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGI 107
Query: 153 VYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGW-PKGSGS 211
++L+ + + + ++ + V+ EIYNE + DLL I P GSG
Sbjct: 108 NQRALQLLFSEVQEKASDWEYT--ITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSG- 164
Query: 212 KVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT 271
+L V G + I+K + R + T NE SSRSH ++I+ V
Sbjct: 165 --QLYVPGLTEFQVQSVD-----DINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG 217
Query: 272 V--------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAK-INQGNIALKRVVESIANGD 322
V G+L LVD+AGSE + ++G G ++++ A+ IN+ AL V+ ++ +
Sbjct: 218 VDCSTGLRTTGKLNLVDLAGSERVGKSGAEG--SRLREAQHINKSLSALGDVIAALRSRQ 275
Query: 323 SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376
HVPFR+SKLT LLQDS D SK LMV+ SP K +T+ +L++ + + +
Sbjct: 276 GHVPFRNSKLTYLLQDSLSGD-SKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 23/278 (8%)
Query: 111 KKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEK 170
K V+S + G + C I YG TGSGK+ T++G PG+ +++ ++ + K
Sbjct: 69 KYLVQSAVDGYNV---C-IFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNK 124
Query: 171 IGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISG 230
FS ++ ++E+Y + + DLL + K S V +E N T +S
Sbjct: 125 FSFS--LKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVE-------NVTVVSI 175
Query: 231 IEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG--------GRLMLVDMA 282
++ IQ+ ++R T NE+SSRSH ++ + + + G+L VD+A
Sbjct: 176 STYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235
Query: 283 GSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFED 342
GSE ++++G G + K + IN+ AL V+ ++++G+ H+P+R+ KLTML+ DS
Sbjct: 236 GSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGG 294
Query: 343 DKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGP 380
+ +K LM + SP + +T +L Y ++ + I+ P
Sbjct: 295 N-AKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP 331
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 150/312 (48%), Gaps = 44/312 (14%)
Query: 91 RDFSLDGV---SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA 147
+ F+ D V + + E D ++ V+S + G TI YG TG+GK++TM G
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFN----GTIFAYGQTGTGKTYTMEGIR 123
Query: 148 KQP---GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIG 204
P G++ S I S + + V+ + LEIY EEI DLLS + +
Sbjct: 124 GDPEKRGVIPNSFDHIFTHISRSQNQ---QYLVRASYLEIYQEEIRDLLSKDQTKRLELK 180
Query: 205 WPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKV----EKRRIVKSTQCNERSSR 260
+G V+ ++F++ K KEI+ V + R V +T NE SSR
Sbjct: 181 ERPDTGVYVK--------DLSSFVT-----KSVKEIEHVMNVGNQNRSVGATNMNEHSSR 227
Query: 261 SHCMIILDV--PTVG---------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNI 309
SH + ++ + VG G+L LVD+AGSE + G G K T KIN
Sbjct: 228 SHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEAT-KINLSLS 286
Query: 310 ALKRVVESIANGDS-HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLE 368
AL V+ ++ +G S H+P+RDSKLT LLQDS + +K +MV P + +T+ TL
Sbjct: 287 ALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGN-AKTVMVANVGPASYNVEETLTTLR 345
Query: 369 YGAKAKCIIRGP 380
Y +AK I P
Sbjct: 346 YANRAKNIKNKP 357
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 26/276 (9%)
Query: 107 DSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG------CAKQPGIVYKSLKDI 160
D Y+ + + + G +CT + YG TG+GKS++M + GI+ ++L DI
Sbjct: 76 DEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDI 135
Query: 161 LGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGK 220
+ E + V + +EIYNE+ +DLL GS + ++
Sbjct: 136 FERVTARQENNKDAIQVYASFIEIYNEKPFDLL----------------GSTPHMPMVAA 179
Query: 221 KAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP--TVGGRLML 278
+ + T + + ++ + R V+ T N SSRSH ++ + V T R+ +
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNI 239
Query: 279 VDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQD 338
VD+AGSE + + G G A+ + IN G +++ +VV S+A G + +P+RDS LT +LQ
Sbjct: 240 VDLAGSEGVRRTGHEGV-ARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQA 298
Query: 339 SFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374
S +S + + C SP ++ +T+ TL +G AK
Sbjct: 299 SL-TAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 26/276 (9%)
Query: 107 DSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG------CAKQPGIVYKSLKDI 160
D Y+ + + + G +CT + YG TG+GKS++M + GI+ ++L DI
Sbjct: 76 DEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDI 135
Query: 161 LGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGK 220
+ E + V + +EIYNE+ +DLL GS + ++
Sbjct: 136 FERVTARQENNKDAIQVYASFIEIYNEKPFDLL----------------GSTPHMPMVAA 179
Query: 221 KAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP--TVGGRLML 278
+ + T + + ++ + R V+ T N SSRSH ++ + V T R+ +
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNI 239
Query: 279 VDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQD 338
VD+AGSE + + G G A+ + IN G +++ +VV S+A G + +P+RDS LT +LQ
Sbjct: 240 VDLAGSEGVRRTGHEGV-ARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQA 298
Query: 339 SFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374
S +S + + C SP ++ +T+ TL +G AK
Sbjct: 299 SL-TAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 139/289 (48%), Gaps = 35/289 (12%)
Query: 107 DSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESD 166
D +K E+ + G I YG TGSGKS+TM G A QPG++ + L L + +
Sbjct: 74 DIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR-LCSGLFERTQ 132
Query: 167 NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLE---VMGKKAK 223
E S V+V+ +EIYNE++ DLL PKGS +++ V+G
Sbjct: 133 KEENEEQSFKVEVSYMEIYNEKVRDLLD-----------PKGSRQTLKVREHSVLGPYVD 181
Query: 224 NATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMI-------ILDVP--TVG- 273
+ ++ I + + K R V +T NE SSRSH + + DV T G
Sbjct: 182 GLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241
Query: 274 --GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIA------NGDSHV 325
G+L LVD+AGSE + G G K + + IN+ L V+ ++A N + V
Sbjct: 242 KVGKLSLVDLAGSERATKTGAAGDRLK-EGSNINKSLTTLGLVISALADQSAGKNKNKFV 300
Query: 326 PFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374
P+RDS LT LL+DS + SK MV SP +T+ TL Y +AK
Sbjct: 301 PYRDSVLTWLLKDSLGGN-SKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 45/357 (12%)
Query: 40 TAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVS 99
+A+ P + I+VV R R P + +EK S V + + D V
Sbjct: 2 SAEREIPAEDSIKVVCRFR--PLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKV- 58
Query: 100 LSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM---FGCAKQPGIVYKS 156
+ Y + +S ++ V G TI YG T SGK+HTM G + + GI+ +
Sbjct: 59 FKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRI 118
Query: 157 LKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLE 216
+ DI ++ ++V+ EIY ++I DLL SKV L
Sbjct: 119 VNDIFNHIY--AMEVNLEFHIKVSYYEIYMDKIRDLLDV---------------SKVNLS 161
Query: 217 VMGKK-----AKNAT--FISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDV 269
V K K AT F+S E + + I++ + R + T NE SSRSH + +++V
Sbjct: 162 VHEDKNRVPYVKGATERFVSSPE--DVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINV 219
Query: 270 --------PTVGGRLMLVDMAGSENIEQAGQTGFEAKMQTAK-INQGNIALKRVVESIAN 320
+ G+L LVD+AGSE + + G G + AK IN+ AL V+ ++A+
Sbjct: 220 KQENLENQKKLSGKLYLVDLAGSEKVSKTGAEG--TVLDEAKNINKSLSALGNVISALAD 277
Query: 321 GD-SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376
G+ +H+P+RDSKLT +LQ+S + ++ +V+C SP +T TL++G +AK +
Sbjct: 278 GNKTHIPYRDSKLTRILQESLGGN-ARTTIVICCSPASFNESETKSTLDFGRRAKTV 333
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 141/272 (51%), Gaps = 39/272 (14%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCA-KQP---GIVYKSLKDILGDESDNGEKIGFSTFVQV 179
G T+ YG TG+GKS+TM G + P G++ + ++ I + I ++ V+V
Sbjct: 79 GYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYT--VRV 136
Query: 180 TVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVR--LEVMGKKAKNATFISGIEAGKIS 237
+ +EIY E I DLL+ N + K G V+ LE+ ++S ++
Sbjct: 137 SYMEIYMERIRDLLAPQNDN-LPVHEEKNRGVYVKGLLEI---------YVSSVQ----- 181
Query: 238 KEIQKVEKR----RIVKSTQCNERSSRSHCMIILDVP--------TVGGRLMLVDMAGSE 285
E+ +V +R R V +T N+ SSRSH + ++ + G+L LVD+AGSE
Sbjct: 182 -EVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSE 240
Query: 286 NIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG-DSHVPFRDSKLTMLLQDSFEDDK 344
+ + G +G + + KIN+ AL V+ ++ +G SHVP+RDSKLT +LQ+S +
Sbjct: 241 KVGKTGASG-QTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299
Query: 345 SKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376
L++ C SP +T+ TL +G +AK I
Sbjct: 300 RTTLIINC-SPSSYNDAETLSTLRFGMRAKSI 330
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 148/305 (48%), Gaps = 46/305 (15%)
Query: 93 FSLDGV---SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
++ D V S S+E+ + KK V+ + G TI YG T SGK+HTM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYN----GTIFAYGQTSSGKNHTMEGKLHD 101
Query: 150 P---GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWP 206
P GI+ + ++DI E + F ++V+ EIY ++I DLL
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFH--IKVSYFEIYLDKIRDLLDV----------- 148
Query: 207 KGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQCNERSSR 260
SK L V K + ++ G ++ I + + R V T NE SSR
Sbjct: 149 ----SKTNLSVHEDKNR-VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 261 SHCMIILDVPT--------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAK-INQGNIAL 311
SH + +++V + G+L LVD+AGSE + + G G A + AK IN+ AL
Sbjct: 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEG--AVLDEAKNINKSLSAL 261
Query: 312 KRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
V+ ++A G ++VP+RDSK+T +LQDS + + +V+C SP +T TL +G
Sbjct: 262 GNVISALAEGSTYVPYRDSKMTRILQDSLGGN-CRTTIVICCSPSSYNESETKSTLLFGQ 320
Query: 372 KAKCI 376
+AK I
Sbjct: 321 RAKTI 325
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 144/296 (48%), Gaps = 43/296 (14%)
Query: 99 SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP---GIVYK 155
S S+E+ + KK V+ + G TI YG T SGK+HTM G P GI+ +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYN----GTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPR 110
Query: 156 SLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRL 215
++DI E + F ++V+ EIY ++I DLL SK L
Sbjct: 111 IVQDIFNYIYSMDENLEFH--IKVSYFEIYLDKIRDLLDV---------------SKTNL 153
Query: 216 EVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDV 269
V K + ++ G ++ I + + R V T NE SSRSH + +++V
Sbjct: 154 SVHEDKNR-VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV 212
Query: 270 PT--------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAK-INQGNIALKRVVESIAN 320
+ G+L LVD+AGSE + + G G A + AK IN+ AL V+ ++A
Sbjct: 213 KQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEG--AVLDEAKNINKSLSALGNVISALAE 270
Query: 321 GDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376
G ++VP+RDSK+T +LQDS + + +V+C SP +T TL +G +AK I
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGN-CRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 148/305 (48%), Gaps = 46/305 (15%)
Query: 93 FSLDGV---SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
++ D V S S+E+ + KK V+ + G TI YG T SGK+HTM G
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYN----GTIFAYGQTSSGKTHTMEGKLHD 101
Query: 150 P---GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWP 206
P GI+ + ++DI E + F ++V+ EIY ++I DLL
Sbjct: 102 PEGMGIIPRIVQDIFNYIYSMDENLEFH--IKVSYFEIYLDKIRDLLDV----------- 148
Query: 207 KGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQCNERSSR 260
SK L V K + ++ G ++ I + + R V T NE SSR
Sbjct: 149 ----SKTNLSVHEDKNR-VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 261 SHCMIILDVPT--------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAK-INQGNIAL 311
SH + +++V + G+L LVD+AGSE + + G G A + AK IN+ AL
Sbjct: 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEG--AVLDEAKNINKSLSAL 261
Query: 312 KRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
V+ ++A G ++VP+RDSK+T +LQDS + + +V+C SP +T TL +G
Sbjct: 262 GNVISALAEGSTYVPYRDSKMTRILQDSLGGN-CRTTIVICCSPSSYNESETKSTLLFGQ 320
Query: 372 KAKCI 376
+AK I
Sbjct: 321 RAKTI 325
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 45/307 (14%)
Query: 83 RVRADFGYRDFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKS 140
+ ++ G + FS D V LS + D+ ++S + G + I YG TGSGK+
Sbjct: 92 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNI----CIFAYGQTGSGKT 147
Query: 141 HTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
+TM G + G++ +++ D+L D +G+ ++ T LEIYNE +YDLLS+
Sbjct: 148 YTMDGVPESVGVIPRTV-DLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN----- 201
Query: 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQC 254
+ ++R M K KN ++S I + + + + R ST
Sbjct: 202 ------EQKDMEIR---MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 252
Query: 255 NERSSRSHCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKI 304
NERSSRSH + L++ +G G + LVD+AGSE+ + + + +T I
Sbjct: 253 NERSSRSHAVTKLEL--IGRHAEKQEISVGSINLVDLAGSESPKTSTRM-----TETKNI 305
Query: 305 NQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTI 364
N+ L V+ ++ H+P+R+SKLT LL S + SK LM + SP +++
Sbjct: 306 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFINVSPFQDCFQESV 364
Query: 365 CTLEYGA 371
+L + A
Sbjct: 365 KSLRFAA 371
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 45/307 (14%)
Query: 83 RVRADFGYRDFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKS 140
+ ++ G + FS D V LS + D+ ++S + G + I YG TGSGK+
Sbjct: 106 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNI----CIFAYGQTGSGKT 161
Query: 141 HTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
+TM G + G++ +++ D+L D +G+ ++ T LEIYNE +YDLLS+
Sbjct: 162 YTMDGVPESVGVIPRTV-DLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN----- 215
Query: 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQC 254
+ ++R M K KN ++S I + + + + R ST
Sbjct: 216 ------EQKDMEIR---MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 266
Query: 255 NERSSRSHCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKI 304
NERSSRSH + L++ +G G + LVD+AGSE+ + + + +T I
Sbjct: 267 NERSSRSHAVTKLEL--IGRHAEKQEISVGSINLVDLAGSESPKTSTRM-----TETKNI 319
Query: 305 NQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTI 364
N+ L V+ ++ H+P+R+SKLT LL S + SK LM + SP +++
Sbjct: 320 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFINVSPFQDCFQESV 378
Query: 365 CTLEYGA 371
+L + A
Sbjct: 379 KSLRFAA 385
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 45/307 (14%)
Query: 83 RVRADFGYRDFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKS 140
+ ++ G + FS D V LS + D+ ++S + G + I YG TGSGK+
Sbjct: 98 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNI----CIFAYGQTGSGKT 153
Query: 141 HTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
+TM G + G++ +++ D+L D +G+ ++ T LEIYNE +YDLLS+
Sbjct: 154 YTMDGVPESVGVIPRTV-DLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN----- 207
Query: 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQC 254
+ ++R M K KN ++S I + + + + R ST
Sbjct: 208 ------EQKDMEIR---MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 258
Query: 255 NERSSRSHCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKI 304
NERSSRSH + L++ +G G + LVD+AGSE+ + + + +T I
Sbjct: 259 NERSSRSHAVTKLEL--IGRHAEKQEISVGSINLVDLAGSESPKTSTRMT-----ETKNI 311
Query: 305 NQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTI 364
N+ L V+ ++ H+P+R+SKLT LL S + SK LM + SP +++
Sbjct: 312 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFINVSPFQDCFQESV 370
Query: 365 CTLEYGA 371
+L + A
Sbjct: 371 KSLRFAA 377
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 22/276 (7%)
Query: 111 KKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEK 170
++ V+S + G + C I YG TGSGK++TM G++ +L I ++ E+
Sbjct: 75 RQLVQSSLDGYNV---C-IFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIFKWTANLKER 128
Query: 171 IGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRL--EVMGKKAKNATFI 228
G++ ++ +EIYNE I DLL +R E G N T +
Sbjct: 129 -GWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRM 187
Query: 229 SGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDV--------PTVGGRLMLVD 280
++ ++K K R +T+ NERSSRSH + ++ + T G+L LVD
Sbjct: 188 KMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVD 247
Query: 281 MAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDS---HVPFRDSKLTMLLQ 337
+AGSE I + TG E +T IN+ L V+ ++ D+ ++PFR+SKLT LLQ
Sbjct: 248 LAGSERINSSAVTG-ERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQ 306
Query: 338 DSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKA 373
S D SK LM + PDP I +T+ +L + +K
Sbjct: 307 YSLVGD-SKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 149/334 (44%), Gaps = 64/334 (19%)
Query: 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQP 150
+ F+ D V + + D Y + V I V G T+ YG TG+GK++TM G +P
Sbjct: 68 KTFTFDAVYDASSKQAD-LYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEP 126
Query: 151 ---GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPK 207
G++ + + I S + + V+ + LEIY EEI DLLS G
Sbjct: 127 ELRGVIPNAFEHIFTHISRSQNQ---QYLVRASYLEIYQEEIRDLLSKEPGK-------- 175
Query: 208 GSGSKVRLEVMGKKAKNATFISGIEA--GKISKEIQKV----EKRRIVKSTQCNERSSRS 261
RLE + + + +I + + K KEI+ V + R V ST NE SSRS
Sbjct: 176 ------RLE-LKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRS 228
Query: 262 HCMIILDVPTVG-----------GRLMLVDMAGSENIEQAG------------------- 291
H + I+ V G+L LVD+AGSE +AG
Sbjct: 229 HAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGG 288
Query: 292 ----QTGFEAKMQTAKINQGNIALKRVVESIA-NGDSHVPFRDSKLTMLLQDSFEDDKSK 346
G E + +KIN AL V+ ++A N +H+P+RDSKLT LLQDS + +K
Sbjct: 289 GSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGN-AK 347
Query: 347 ILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGP 380
+MV P +++ TL + +AK I P
Sbjct: 348 TIMVATLGPASHSYDESLSTLRFANRAKNIKNKP 381
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 45/307 (14%)
Query: 83 RVRADFGYRDFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKS 140
+ ++ G + FS D V LS + D+ ++S + G + I YG +GSGK+
Sbjct: 95 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNI----CIFAYGQSGSGKT 150
Query: 141 HTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
+TM G + G++ +++ D+L D +G+ ++ T LEIYNE +YDLLS+
Sbjct: 151 YTMDGVPESVGVIPRTV-DLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN----- 204
Query: 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQC 254
+ ++R M K KN ++S I + + + + R ST
Sbjct: 205 ------EQKDMEIR---MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 255
Query: 255 NERSSRSHCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKI 304
NERSSRSH + L++ +G G + LVD+AGSE+ + + + +T I
Sbjct: 256 NERSSRSHAVTKLEL--IGRHAEKQEISVGSINLVDLAGSESPKTSTRMT-----ETKNI 308
Query: 305 NQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTI 364
N+ L V+ ++ H+P+R+SKLT LL S + SK LM + SP +++
Sbjct: 309 NRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFINVSPFQDCFQESV 367
Query: 365 CTLEYGA 371
+L + A
Sbjct: 368 KSLRFAA 374
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 45/307 (14%)
Query: 83 RVRADFGYRDFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKS 140
+ ++ G + FS D V LS + D+ ++S + G + I YG TGSGK+
Sbjct: 95 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNI----CIFAYGQTGSGKT 150
Query: 141 HTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200
+TM G + G++ +++ D+L D +G+ ++ T LEIYNE +YDLLS+
Sbjct: 151 YTMDGVPESVGVIPRTV-DLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN----- 204
Query: 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGI------EAGKISKEIQKVEKRRIVKSTQC 254
+ ++R M K KN ++S I + + + + R ST
Sbjct: 205 ------EQKDMEIR---MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAG 255
Query: 255 NERSSRSHCMIILDVPTVG----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKI 304
NERSSRSH + L++ +G G + LVD+AGSE+ + + + +T I
Sbjct: 256 NERSSRSHAVTKLEL--IGRHAEKQEISVGSINLVDLAGSESPKTSTRMT-----ETKNI 308
Query: 305 NQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTI 364
+ L V+ ++ H+P+R+SKLT LL S + SK LM + SP +++
Sbjct: 309 KRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN-SKTLMFINVSPFQDCFQESV 367
Query: 365 CTLEYGA 371
+L + A
Sbjct: 368 KSLRFAA 374
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 145/314 (46%), Gaps = 54/314 (17%)
Query: 101 SEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDI 160
++E DS ++F++ G C I YG TGSGKS+TM G QPG++ ++ +D+
Sbjct: 116 TQEHVYDSLGEEFLDHNFEGY---HTC-IFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDL 171
Query: 161 LGD-ESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSS--NNGGGFGIGWPKGSGSKVRLE- 216
S E S V+V+ E+YNE + DLL+ N + + KVR
Sbjct: 172 FQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYL--------KVRESP 223
Query: 217 VMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIIL--------- 267
G K+ T + +I + ++ + R V ST+ N+ SSRSH + +
Sbjct: 224 TEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDL 283
Query: 268 ---DVPTVGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN---- 320
D R+ LVD+AGSE + TG + + + IN+ L RV+ ++A+
Sbjct: 284 ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLR-EGSNINKSLTTLGRVIAALADPKSS 342
Query: 321 ------------------GDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHK 362
+S VP+RDS LT LL+DS + SK M+ C S P + +
Sbjct: 343 ASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGN-SKTAMIACIS--PTDYDE 399
Query: 363 TICTLEYGAKAKCI 376
T+ TL Y +AK I
Sbjct: 400 TLSTLRYADQAKRI 413
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 34/303 (11%)
Query: 92 DFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
+F D + ++ ++D F + + V+S + G + I YG TGSGK+ TM
Sbjct: 109 EFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVA----IFAYGQTGSGKTFTMLNPG-- 162
Query: 150 PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGS 209
GI+ ++ I + K G+ V +EIYNE I DLL S+N + +
Sbjct: 163 DGIIPSTISHIFNWINKLKTK-GWDYKVNAEFIEIYNENIVDLLRSDNNN------KEDT 215
Query: 210 GSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSHC 263
++ E+ + T I+ + + K+ E ++K K R ST NE SSRSH
Sbjct: 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 275
Query: 264 MIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
+ I+ + G L LVD+AGSE I + G + +T IN+ AL V+
Sbjct: 276 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSALGDVI 334
Query: 316 ESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAK 372
++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +K
Sbjct: 335 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASK 393
Query: 373 AKC 375
Sbjct: 394 VNS 396
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 29/267 (10%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLE 183
G CT++ YG TG+GK+HTM G A +PG++Y ++ + + E+ ST V+ LE
Sbjct: 104 GYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICST--AVSYLE 161
Query: 184 IYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKV 243
+YNE+I DLL N G + G V + + + + ++ G
Sbjct: 162 VYNEQIRDLLV--NSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNG--------- 210
Query: 244 EKRRIVKSTQCNERSSRSHCMIIL------DVPTVG-----GRLMLVDMAGSENIEQAGQ 292
K R T N SSRSH + + ++ ++ L+D+AGSE +G
Sbjct: 211 NKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGA 270
Query: 293 TGFEAKMQTAKINQGNIALKRVVESIANG---DSHVPFRDSKLTMLLQDSFEDDKSKILM 349
G ++ IN+ +AL V+ ++A+ + H+P+R+SKLT LL+DS + + +M
Sbjct: 271 KGTRF-VEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN-CQTIM 328
Query: 350 VLCASPDPKEIHKTICTLEYGAKAKCI 376
+ SP T TL+Y +AK I
Sbjct: 329 IAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 62/363 (17%)
Query: 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPD--KQTLRVRADFGYRDFSLDGVSLSEEE 104
++ P+ V R+R S LQV P + TL FG+ V L+E+
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFH------VVLAEDA 62
Query: 105 DLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA------KQPGIVYKSLK 158
++ Y+ V+ + G T+ YG TGSGK++TM + + GIV +++
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMA 122
Query: 159 DI--LGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLE 216
+ L DE+D V V+ LE+Y EE DLL G+ R
Sbjct: 123 EAFKLIDENDL-----LDCLVHVSYLEVYKEEFRDLLE--------------VGTASRDI 163
Query: 217 VMGKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP 270
+ + + + G++ ++ ++ R +T N SSRSH + + +
Sbjct: 164 QLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLE 223
Query: 271 TVG-----------GRLML-----VDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRV 314
G G+L++ VD+AGSE + + G TG K ++ +IN +AL V
Sbjct: 224 QRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLK-ESIQINSSLLALGNV 282
Query: 315 VESIANGD---SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
+ ++ + SH+P+RDSK+T +L+DS + +K +M+ C SP + +T+ TL Y +
Sbjct: 283 ISALGDPQRRGSHIPYRDSKITRILKDSLGGN-AKTVMIACVSPSSSDFDETLNTLNYAS 341
Query: 372 KAK 374
+A+
Sbjct: 342 RAQ 344
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 34/301 (11%)
Query: 92 DFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
+F D + ++ ++D F + + V+S + G + C I YG TGSGK+ TM
Sbjct: 64 EFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNV---C-IFAYGQTGSGKTFTMLNPG-- 117
Query: 150 PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGS 209
GI+ ++ I + K G+ V +EIYNE I DLL S+N + +
Sbjct: 118 DGIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEIYNENIVDLLRSDNNN------KEDT 170
Query: 210 GSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSHC 263
++ E+ + T I+ + + K+ E ++K K R ST NE SSRSH
Sbjct: 171 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 230
Query: 264 MIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
+ I+ + G L LVD+AGSE I + G + +T IN+ L V+
Sbjct: 231 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDVI 289
Query: 316 ESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAK 372
++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +K
Sbjct: 290 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASK 348
Query: 373 A 373
Sbjct: 349 V 349
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 62/363 (17%)
Query: 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPD--KQTLRVRADFGYRDFSLDGVSLSEEE 104
++ P+ V R+R S LQV P + TL FG+ V L+E+
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFH------VVLAEDA 62
Query: 105 DLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA------KQPGIVYKSLK 158
++ Y+ V+ + G T+ YG TGSGK++TM + + GIV +++
Sbjct: 63 GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMA 122
Query: 159 DI--LGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLE 216
+ L DE+D V V+ LE+Y EE DLL G+ R
Sbjct: 123 EAFKLIDENDL-----LDCLVHVSYLEVYKEEFRDLLE--------------VGTASRDI 163
Query: 217 VMGKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP 270
+ + + + G++ ++ ++ R +T N SSRSH + + +
Sbjct: 164 QLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLK 223
Query: 271 TVG-----------GRLML-----VDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRV 314
G G+L++ VD+AGSE + + G TG E + ++ +IN +AL V
Sbjct: 224 QRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTG-ELRKESIQINSSLLALGNV 282
Query: 315 VESIANGD---SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
+ ++ + S++P+RDSK+T +L+DS + +K +M+ C SP + +T+ TL Y +
Sbjct: 283 ISALGDPQRRGSNIPYRDSKITRILKDSLGGN-AKTVMIACVSPSSSDFDETLNTLNYAS 341
Query: 372 KAK 374
+A+
Sbjct: 342 RAQ 344
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 136/307 (44%), Gaps = 42/307 (13%)
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--- 148
DF+ D + +E Y+ + + G K T YG TGSGK+HTM G
Sbjct: 106 DFAFDETASNE-----VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA 160
Query: 149 ---QPGIVYKSLKDI-LGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIG 204
GI + +D+ L K+G +V T EIYN +++DLL+
Sbjct: 161 QNASKGIYAMASRDVFLLKNQPCYRKLGLEVYV--TFFEIYNGKLFDLLNK--------- 209
Query: 205 WPKGSGSKVRLEVMGKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERS 258
K +L V+ + K + G++ A + K I R T N S
Sbjct: 210 -------KAKLRVL-EDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNS 261
Query: 259 SRSHCMIILDVPTVG---GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
SRSH + + G G+ LVD+AG+E + +M+ A+IN+ +ALK +
Sbjct: 262 SRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECI 321
Query: 316 ESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKC 375
++ +H PFR+SKLT +L+DSF + S+ M+ SP T+ TL Y + K
Sbjct: 322 RALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKE 381
Query: 376 IIRGPHT 382
+ PH+
Sbjct: 382 L--SPHS 386
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 145/302 (48%), Gaps = 34/302 (11%)
Query: 91 RDFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK 148
+F D + ++ ++D F + + V+S + G + C I YG TGSGK+ TM
Sbjct: 51 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNV---C-IFAYGQTGSGKTFTMLNPG- 105
Query: 149 QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKG 208
GI+ ++ I + K G+ V +EIYNE I DLL S+N +
Sbjct: 106 -DGIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEIYNENIVDLLRSDNNN------KED 157
Query: 209 SGSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSH 262
+ ++ E+ + T I+ + + K+ E ++K K R ST NE SSRSH
Sbjct: 158 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 217
Query: 263 CMIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRV 314
+ I+ + G L LVD+AGSE I + G + +T IN+ L V
Sbjct: 218 SIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDV 276
Query: 315 VESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
+ ++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +
Sbjct: 277 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFAS 335
Query: 372 KA 373
K
Sbjct: 336 KV 337
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 133/265 (50%), Gaps = 34/265 (12%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLE 183
G + YG TGSGK+ TM G++ SLK I D + EK G+S V+ +E
Sbjct: 461 GTNVCVFAYGQTGSGKTFTM--SHPTNGMIPLSLKKIFNDIEELKEK-GWSYTVRGKFIE 517
Query: 184 IYNEEIYDLLSSNNGGGFGIGWPK-GSGSKVRL---EVMGKKAKNATFISGIEAGKISKE 239
IYNE I DLL+ PK +K + ++ GK T +S I+ +
Sbjct: 518 IYNEAIVDLLN-----------PKIDPNTKYEIKHDDIAGKTT--VTNVSTIDIKSPEQA 564
Query: 240 I---QKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG--------GRLMLVDMAGSENIE 288
I + K+R +T+ N+ SSRSH + I+D+ G L L+D+AGSE +
Sbjct: 565 ITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLN 624
Query: 289 QAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-SHVPFRDSKLTMLLQDSFEDDKSKI 347
+ G K +T IN+ L V+ S+ D SHVP+R+SKLT LL+ S + SK
Sbjct: 625 NSRAEGDRLK-ETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGN-SKT 682
Query: 348 LMVLCASPDPKEIHKTICTLEYGAK 372
LM + SP K++++TI +L + K
Sbjct: 683 LMFVNISPLTKDLNETINSLRFATK 707
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 42/306 (13%)
Query: 93 FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA---KQ 149
F LDGV +DL Y+ + +S G TIM YG TG+GK++TM G K
Sbjct: 74 FKLDGVLHDASQDL--VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 150 PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGS 209
GI+ ++L+ + E+ + V+V+ LEIYNE ++DLLS+ P
Sbjct: 132 RGILPRALQQVFRMIE---ERPTHAITVRVSYLEIYNESLFDLLST---------LPYVG 179
Query: 210 GSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSHC 263
S + ++ + FI G+ S+E + + E RI+ S N+ SSRSHC
Sbjct: 180 PSVTPMTIV--ENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHC 237
Query: 264 MIILDVPT----------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKR 313
+ + + + ++ LVD+AGSE + ++G G + + IN+ L++
Sbjct: 238 IFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEG-QVLKEATYINKSLSFLEQ 296
Query: 314 VVESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYG 370
+ IA GD H+PFR KLT L+DS + + +L V + ++ +T+ +L +
Sbjct: 297 AI--IALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL-VTNIYGEAAQLEETLSSLRFA 353
Query: 371 AKAKCI 376
++ K +
Sbjct: 354 SRMKLV 359
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 134/298 (44%), Gaps = 38/298 (12%)
Query: 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--- 148
DF+ D + +E Y+ + + G K T YG TGSGK+HTM G
Sbjct: 126 DFAFDETASNE-----VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS 180
Query: 149 ---QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGW 205
GI + +D+ ++ + + V VT EIYN +++DLL+
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNK---------- 229
Query: 206 PKGSGSKVRLEVMGKKAKNATFISGIE------AGKISKEIQKVEKRRIVKSTQCNERSS 259
K +L V+ + ++ + G++ A + K I R T N SS
Sbjct: 230 ------KAKLRVL-EDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282
Query: 260 RSHCMIILDVPTVG---GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVE 316
RSH + + T G G+ LVD+AG+E + +M+ A+IN+ +ALK +
Sbjct: 283 RSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIR 342
Query: 317 SIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374
++ +H PFR+SKLT +L+DSF + S+ M+ SP T+ TL Y + K
Sbjct: 343 ALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 33/266 (12%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCAK------QPGIVYKSLKDILGDESDNGEKIGFSTFV 177
G K T YG TGSGK+HTM G GI + +D+ ++ + + V
Sbjct: 81 GGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYR-NLNLEV 139
Query: 178 QVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIE----- 232
VT EIYN +++DLL+ K +L V+ + ++ + G++
Sbjct: 140 YVTFFEIYNGKVFDLLNK----------------KAKLRVL-EDSRQQVQVVGLQEYLVT 182
Query: 233 -AGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG---GRLMLVDMAGSENIE 288
A + K I R T N SSRSH + + T G G+ LVD+AG+E
Sbjct: 183 CADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGA 242
Query: 289 QAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKIL 348
+ +M+ A+IN+ +ALK + ++ +H PFR+SKLT +L+DSF + S+
Sbjct: 243 DTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 302
Query: 349 MVLCASPDPKEIHKTICTLEYGAKAK 374
M+ SP T+ TL Y + K
Sbjct: 303 MIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 140/305 (45%), Gaps = 42/305 (13%)
Query: 93 FSLDGVSLSEEEDLDSFYK---KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
F D + ++E D +K + ++S + G + C I YG TGSGK++TM
Sbjct: 76 FKFDKI-FDQQETNDEIFKEVGQLIQSSLDGYNV---C-IFAYGQTGSGKTYTMLNPGD- 129
Query: 150 PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWP--- 206
GIV ++ I D G+S V +EIYNE I DLL S G P
Sbjct: 130 -GIVPATINHIFS-WIDKLAARGWSYKVSCEFIEIYNENIVDLLRS--------GAPSQE 179
Query: 207 -KGSGSKVRLEVMGKKAKNATFISGIEA------GKISKEIQKVEKRRIVKSTQCNERSS 259
+ + E+ + T+I+ I + K +++ K R ST NE SS
Sbjct: 180 NNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSS 239
Query: 260 RSHCMIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIAL 311
RSH + I+ + G L LVD+AGSE + + G E +T IN+ L
Sbjct: 240 RSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVG-ERLRETQSINKSLSCL 298
Query: 312 KRVVESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLE 368
V+ ++ + D H+PFR+SKLT LLQ S SK LM + SP +++TI +L
Sbjct: 299 GDVIHALNSPDGQKRHIPFRNSKLTYLLQYSL-IGSSKTLMFVNISPAALHLNETINSLR 357
Query: 369 YGAKA 373
+ +K
Sbjct: 358 FASKV 362
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 144/302 (47%), Gaps = 34/302 (11%)
Query: 91 RDFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK 148
+F D + ++ ++D F + + V+S + G + C I YG TGSGK+ TM
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNV---C-IFAYGQTGSGKTFTMLNPG- 106
Query: 149 QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKG 208
GI+ ++ I + K G+ V +EIYNE I DLL S+N +
Sbjct: 107 -DGIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEIYNENIVDLLRSDNNN------KED 158
Query: 209 SGSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSH 262
+ ++ E+ + T I+ + + K+ E ++K K R ST NE SSRSH
Sbjct: 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 218
Query: 263 CMIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRV 314
+ I+ + G L LVD+AGS I + G + +T IN+ L V
Sbjct: 219 SIFIIHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLR-ETQNINKSLSCLGDV 277
Query: 315 VESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
+ ++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFAS 336
Query: 372 KA 373
K
Sbjct: 337 KV 338
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 38/304 (12%)
Query: 92 DFSLDGV--SLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA-- 147
DFS D V S ++++ V+S + G + I YG TGSGK+ TM G
Sbjct: 84 DFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPV----CIFAYGQTGSGKTFTMEGGPGG 139
Query: 148 --KQPGIVYKSLKDILGDESD-NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIG 204
+ G++ ++L+ + + +G+ +S FV + +EIYNE + DLL++ G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYS-FV-ASYVEIYNETVRDLLAT--------G 189
Query: 205 WPKGSGSKVRLEVMGKKAK-----NATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSS 259
KG G + + G ++ NA ++ ++ + + R V T NERSS
Sbjct: 190 TRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249
Query: 260 RSHCMIILDVP--------TVGGRLMLVDMAGSENIEQAGQTG---FEAKMQTAKINQGN 308
RSH + L + G L LVD+AGSE ++ G E +T IN
Sbjct: 250 RSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSL 309
Query: 309 IALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLE 368
L V+ +++N +SHVP+R+SKLT LLQ+S +K+LM + SP + + +++ +L
Sbjct: 310 STLGLVIMALSNKESHVPYRNSKLTYLLQNSL-GGSAKMLMFVNISPLEENVSESLNSLR 368
Query: 369 YGAK 372
+ +K
Sbjct: 369 FASK 372
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 34/301 (11%)
Query: 92 DFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQ 149
+F D + ++ ++D F + + V+S + G + C I YG TGSGK+ TM
Sbjct: 53 EFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNV---C-IFAYGQTGSGKTFTMLNPG-- 106
Query: 150 PGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGS 209
GI+ ++ I + K G+ V +EIYNE I DLL S+N + +
Sbjct: 107 DGIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEIYNENIVDLLRSDNNN------KEDT 159
Query: 210 GSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSHC 263
++ E+ + T I+ + + K+ E ++K K R ST NE SSRSH
Sbjct: 160 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 219
Query: 264 MIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVV 315
+ I+ + G L LVD+AGSE I + G + +T I + L V+
Sbjct: 220 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNIKKSLSCLGDVI 278
Query: 316 ESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAK 372
++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +K
Sbjct: 279 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 373 A 373
Sbjct: 338 V 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 144/302 (47%), Gaps = 34/302 (11%)
Query: 91 RDFSLDGVSLSEEEDLDSFYK--KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK 148
+F D + ++ ++D F + + V+S + G + C I YG TGSGK+ TM
Sbjct: 52 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNV---C-IFAYGQTGSGKTFTMLNPG- 106
Query: 149 QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKG 208
GI+ ++ I + K G+ V +EIYNE I DLL S+N +
Sbjct: 107 -DGIIPSTISHIFNWINKLKTK-GWDYKVNCEFIEIYNENIVDLLRSDNNN------KED 158
Query: 209 SGSKVRLEVMGKKAKNATFISGIEAGKISKE------IQKVEKRRIVKSTQCNERSSRSH 262
+ ++ E+ + T I+ + + K+ E ++K K R ST NE SS SH
Sbjct: 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASH 218
Query: 263 CMIILDVPTVG--------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRV 314
+ I+ + G L LVD+AGSE I + G + +T IN+ L V
Sbjct: 219 SIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR-ETQNINKSLSCLGDV 277
Query: 315 VESIANGDS---HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGA 371
+ ++ DS H+PFR+SKLT LLQ S D SK LM + SP I++T+ +L + +
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGD-SKTLMFVNISPSSSHINETLNSLRFAS 336
Query: 372 KA 373
K
Sbjct: 337 KV 338
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 59/367 (16%)
Query: 51 IEVVGRIRNFPNPNPKEKPSSVLQ--------VNPDKQTLRVRADFGYRDFSLDGVSLSE 102
++V R+R F + ++Q VNP KQ F + D+S S +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSF-DYSY--WSHTS 61
Query: 103 EEDLD-----SFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--QPGIVYK 155
ED++ Y+ E + G I YG TG+GKS+TM G + Q GI+ +
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 156 SLKDILGDESD-NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVR 214
+D+ +D + + +S V+V+ +EIY E + DLL+ N G +VR
Sbjct: 122 LCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLNPKNKGNL----------RVR 169
Query: 215 LE-VMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCM--IIL---- 267
++G ++ + ++ I + K R V +T NE SSRSH + II
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR 229
Query: 268 -DVPT-----VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG 321
D T ++ LVD+AGSE + G G K + A IN+ L +V+ ++A
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEM 288
Query: 322 DS------------HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEY 369
DS +P+RDS LT LL+++ + S+ MV SP +T+ TL Y
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN-SRTAMVAALSPADINYDETLSTLRY 347
Query: 370 GAKAKCI 376
+AK I
Sbjct: 348 ADRAKQI 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 59/367 (16%)
Query: 51 IEVVGRIRNFPNPNPKEKPSSVLQ--------VNPDKQTLRVRADFGYRDFSLDGVSLSE 102
++V R+R F + ++Q VNP KQ F + D+S S +
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSF-DYSY--WSHTS 77
Query: 103 EEDLD-----SFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--QPGIVYK 155
ED++ Y+ E + G I YG TG+GKS+TM G + Q GI+ +
Sbjct: 78 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 137
Query: 156 SLKDILGDESD-NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVR 214
+D+ +D + + +S V+V+ +EIY E + DLL+ N G +VR
Sbjct: 138 LCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLNPKNKGNL----------RVR 185
Query: 215 LE-VMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCM--IIL---- 267
++G ++ + ++ I + K R V +T NE SSRSH + II
Sbjct: 186 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKR 245
Query: 268 -DVPT-----VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG 321
D T ++ LVD+AGSE + G G K + A IN+ L +V+ ++A
Sbjct: 246 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEM 304
Query: 322 DS------------HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEY 369
DS +P+RDS LT LL+++ + S+ MV SP +T+ TL Y
Sbjct: 305 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN-SRTAMVAALSPADINYDETLSTLRY 363
Query: 370 GAKAKCI 376
+AK I
Sbjct: 364 ADRAKQI 370
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 59/367 (16%)
Query: 51 IEVVGRIRNFPNPNPKEKPSSVLQ--------VNPDKQTLRVRADFGYRDFSLDGVSLSE 102
++V R+R F + ++Q VNP KQ F + D+S S +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNP-KQPKETPKSFSF-DYSY--WSHTS 61
Query: 103 EEDLD-----SFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--QPGIVYK 155
ED++ Y+ E + G I YG TG+GKS+TM G + Q GI+ +
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 156 SLKDILGDESD-NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVR 214
+D+ +D + + +S V+V+ +EIY E + DLL+ N G +VR
Sbjct: 122 LCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLNPKNKGNL----------RVR 169
Query: 215 LE-VMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCM--IIL---- 267
++G ++ + ++ I + K R V +T NE SSRSH + II
Sbjct: 170 EHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR 229
Query: 268 -DVPT-----VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG 321
D T ++ LVD+AGSE + G G K + A IN+ L +V+ ++A
Sbjct: 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEM 288
Query: 322 DS------------HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEY 369
DS +P+RDS LT LL+++ + S+ MV SP +T+ TL Y
Sbjct: 289 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN-SRTAMVAALSPADINYDETLSTLRY 347
Query: 370 GAKAKCI 376
+AK I
Sbjct: 348 ADRAKQI 354
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 157/360 (43%), Gaps = 67/360 (18%)
Query: 51 IEVVGRIRNFPNP-NPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLD-- 107
I++ G NP PKE P S D+ Y S + ED++
Sbjct: 28 IQMSGSTTTIVNPKQPKETPKSF------------SFDYSY-------WSHTSPEDINYA 68
Query: 108 ---SFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK--QPGIVYKSLKDILG 162
Y+ E + G I YG TG+GKS+TM G + Q GI+ + +D+
Sbjct: 69 SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFS 128
Query: 163 DESD-NGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLE-VMGK 220
+D + + +S V+V+ +EIY E + DLL+ N G +VR ++G
Sbjct: 129 RINDTTNDNMSYS--VEVSYMEIYCERVRDLLNPKNKGNL----------RVREHPLLGP 176
Query: 221 KAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCM--IIL-----DVPT-- 271
++ + ++ I + K R V +T NE SSRSH + II D T
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNI 236
Query: 272 ---VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDS----- 323
++ LVD+AGSE + G G K + A IN+ L +V+ ++A DS
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 324 -------HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376
+P+RDS LT LL+++ + S+ MV SP +T+ TL Y +AK I
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGN-SRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 125/266 (46%), Gaps = 41/266 (15%)
Query: 128 TIMMYGPTGSGKSHTMFG--------CAKQPGIVYKSLKDI-LGDESDNGEKIGFSTFVQ 178
T YG TGSGK+HTM G C+K GI + +D+ L + N +K+ +
Sbjct: 175 TCFAYGQTGSGKTHTMGGDFSGKNQDCSK--GIYALAARDVFLMLKKPNYKKLELQVYA- 231
Query: 179 VTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISK 238
T EIY+ +++DLL+ K +L V+ + K + G++ ++ K
Sbjct: 232 -TFFEIYSGKVFDLLNR----------------KTKLRVL-EDGKQQVQVVGLQEREV-K 272
Query: 239 EIQKVEKR-------RIVKSTQCNERSSRSHCMIILDVPTVG---GRLMLVDMAGSENIE 288
++ V K R T N SSRSH + + + G G+ L+D+AG+E
Sbjct: 273 CVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLIDLAGNERGA 332
Query: 289 QAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKIL 348
+ +++ A+IN+ +ALK + ++ H PFR SKLT +L+DSF + S+
Sbjct: 333 DTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTC 392
Query: 349 MVLCASPDPKEIHKTICTLEYGAKAK 374
M+ SP T+ TL Y + K
Sbjct: 393 MIATISPGMASCENTLNTLRYANRVK 418
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 32/265 (12%)
Query: 124 GEKCTIMMYGPTGSGKSHTM-----FGCAKQPGIVYKSLKDILG----DESDNGEKIGFS 174
G C+ YG TGSGK++TM +G + PGI + DI + DN + I S
Sbjct: 83 GCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFIS 142
Query: 175 TFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAG 234
+ EIY ++YDLL + +G K EV+ K K ++ E
Sbjct: 143 FY------EIYCGKLYDLLQKRK-----MVAALENGKK---EVVVKDLKILRVLTKEEL- 187
Query: 235 KISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG-----GRLMLVDMAGSENIEQ 289
I K I V R+I ++Q N+ SSRSH ++ +D+ + G++ +D+AGSE
Sbjct: 188 -ILKMIDGVLLRKIGVNSQ-NDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGAD 245
Query: 290 AGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILM 349
+ + A IN+ +ALK + ++ + +H+PFRDS+LT +L+D F KSK +M
Sbjct: 246 TVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFV-GKSKSIM 304
Query: 350 VLCASPDPKEIHKTICTLEYGAKAK 374
+ SP +T+ TL Y ++ K
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVK 329
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 45/315 (14%)
Query: 89 GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAK 148
G + F+ D V E + Y++ I G TI YG T SGK++TM G
Sbjct: 42 GSKSFNFDRV-FHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED 100
Query: 149 QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKG 208
G++ +++ DI ++ ++V+ +EIYNE I DLL
Sbjct: 101 HLGVIPRAIHDIFQKIKKFPDR---EFLLRVSYMEIYNETITDLLCGTQ----------- 146
Query: 209 SGSKVRLEVMGKKAKNATFISGIEAGKIS------KEIQKVEKRRIVKSTQCNERSSRSH 262
K++ ++ + +++ + + K I K EK R T+ N+RSSRSH
Sbjct: 147 ---KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSH 203
Query: 263 CM--IILDVPTVG-----------GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNI 309
+ +IL+ G L LVD+AGSE Q G G K + IN+
Sbjct: 204 TIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLK-EGCNINRSLF 262
Query: 310 ALKRVVESIANGD--SHVPFRDSKLTMLLQDSFEDD-KSKILMVLCASPDPKEIHKTICT 366
L +V++ +++G + +RDSKLT +LQ+S + K++I+ + P +T+
Sbjct: 263 ILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT----PVSFDETLTA 318
Query: 367 LEYGAKAKCIIRGPH 381
L++ + AK + P+
Sbjct: 319 LQFASTAKYMKNTPY 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 124 GEKCTIMMYGPTGSGKSHTMFGCAKQP---GIVYKSLKDILGDESDNGEKIGFSTFVQVT 180
G TI YG T SGK+HTM G P GI+ + DI E + F ++V+
Sbjct: 76 GYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFH--IKVS 133
Query: 181 VLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKIS--K 238
EIY ++I DLL SK L V K + ++ G +S +
Sbjct: 134 YFEIYLDKIRDLLDV---------------SKTNLAVHEDKNR-VPYVKGCTERFVSSPE 177
Query: 239 EIQKV----EKRRIVKSTQCNERSSRSHCMIILDVPT--------VGGRLMLVDMAGSEN 286
E+ V + R V T NE SSRSH + ++++ + G+L LVD+AGSE
Sbjct: 178 EVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEK 237
Query: 287 I 287
+
Sbjct: 238 V 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 304 INQGNIALKRVVESIANGD-SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHK 362
IN+ AL V+ ++A G +HVP+RDSK+T +LQDS D + +V+C SP +
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSL-DGNCRTTIVICCSPSVFNEAE 62
Query: 363 TICTLEYGAKAKCI 376
T TL +G +AK I
Sbjct: 63 TKSTLMFGQRAKTI 76
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 310 ALKRVVESIANGD-SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLE 368
AL V+ ++A G +HVP+RDSK+T +LQDS + + +V+C SP +T TL
Sbjct: 6 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN-CRTTIVICCSPSVFNEAETKSTLM 64
Query: 369 YGAKAKCI 376
+G +AK I
Sbjct: 65 FGQRAKTI 72
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 206 PKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEK 245
P+G+ K+RL+VMG++ T + G + G + + IQ V K
Sbjct: 61 PEGTVKKLRLQVMGERIIRVTALPGTDFGIVPESIQVVAK 100
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 21/142 (14%)
Query: 32 NTTPNPNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDK----QTLRVRAD 87
NT + K S+ Q + +VG + +P+ K KP+ ++ VN D TL D
Sbjct: 110 NTAVGKAAVVKTSSRQTVFLPMVGLV----DPD-KLKPNDLVGVNKDSYLILDTLPSEFD 164
Query: 88 FGYRDFSLD---GVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIM---------MYGPT 135
+ +D + S+ LD ++ VE+ + +K +K M MYGP
Sbjct: 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPP 224
Query: 136 GSGKSHTMFGCAKQPGIVYKSL 157
G+GK+ CA Q + L
Sbjct: 225 GTGKTLLARACAAQTNATFLKL 246
>pdb|3C0L|A Chain A, Uvde K229r
Length = 301
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 353 ASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFI 408
SPDP+ + +++ L Y A+ + IGAED + LG K A+ +F+
Sbjct: 130 GSPDPEVVERSLAELRYSARLLSL---------IGAEDGVLVLHLGGAYGEKGKALRRFV 180
Query: 409 YKLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 181 ENLRGEEEVLRYLALENDERLWNVEE 206
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 129 IMMYGPTGSGKSHTMFGCAKQPGIVYKSL--KDILGDESDNGEKIGFSTFVQVTVLE--- 183
I+++GP G+GK+ A Q G + S+ + GEK+ + F +
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAV 179
Query: 184 IYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVM----GKKAKNATFISGIEAGKISKE 239
I+ +EI LLS G S +++ E + G + I + A +E
Sbjct: 180 IFIDEIDSLLSQRGDG------EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233
Query: 240 IQKVEKRRIVKS--TQCNERSSRSHCMIIL 267
I + +RR+VK E S+R +I L
Sbjct: 234 IDEAARRRLVKRLYIPLPEASARKQIVINL 263
>pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8H|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N-(Phosphonoacetyl)-Putrescine
pdb|4A8P|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
pdb|4A8P|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis With
N5-(Phosphonoacetyl)-L-Ornithine
Length = 355
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 86 ADFGYRD--FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHT 142
ADF Y D + L LSEEE + FY K+ ++ + G C M P G+ T
Sbjct: 221 ADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVT 279
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 26/94 (27%)
Query: 154 YKSLKDILGDESD---NGEK------IGFSTFVQVTVLEIYNEEIYDLLSSNNG------ 198
Y +LKDI D SD NG IG ST+V ++ +YN++ D ++ N+G
Sbjct: 137 YLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQD--DCVAVNSGENIYFS 194
Query: 199 GGFGIGWPKGSGSKVRLEVMGKKA----KNATFI 228
GG+ G G + + +G ++ KN TF+
Sbjct: 195 GGYCSG-----GHGLSIGSVGGRSDNTVKNVTFV 223
>pdb|3BZJ|A Chain A, Uvde K229l
Length = 301
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 354 SPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFIY 409
SPDP+ + +++ L Y A+ + +GAED + LG K A+ +F+
Sbjct: 131 SPDPEVVERSLAELRYSARLLSL---------LGAEDGVLVLHLGGAYGEKGKALRRFVE 181
Query: 410 KLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 182 NLRGEEEVLRYLALENDERLWNVEE 206
>pdb|2J6V|B Chain B, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 279
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 354 SPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFIY 409
SPDP+ + +++ L Y A+ + +GAED + LG K A+ +F+
Sbjct: 110 SPDPEVVERSLAELRYSARLLSL---------LGAEDGVLVLHLGGAYGEKGKALRRFVE 160
Query: 410 KLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 161 NLRGEEEVLRYLALENDERLWNVEE 185
>pdb|2J6V|A Chain A, Crystal Structure Of The Dna Repair Enzyme Uv Damage
Endonuclease
Length = 282
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 353 ASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFI 408
SPDP+ + +++ L Y A+ + +GAED + LG K A+ +F+
Sbjct: 112 GSPDPEVVERSLAELRYSARLLSL---------LGAEDGVLVLHLGGAYGEKGKALRRFV 162
Query: 409 YKLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 163 ENLRGEEEVLRYLALENDERLWNVEE 188
>pdb|3C0S|A Chain A, Uvde 3 Metals
Length = 301
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 353 ASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFI 408
SPDP+ + +++ L Y A+ + +GAED + LG K A+ +F+
Sbjct: 130 GSPDPEVVERSLAELRYSARLLSL---------LGAEDGVLVLHLGGAYGEKGKALRRFV 180
Query: 409 YKLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 181 ENLRGEEEVLRYLALENDERLWNVEE 206
>pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|B Chain B, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|C Chain C, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|D Chain D, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|E Chain E, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|F Chain F, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|G Chain G, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|H Chain H, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|I Chain I, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|J Chain J, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|K Chain K, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
pdb|3TXX|L Chain L, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis
Length = 359
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 86 ADFGYRD--FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHT 142
ADF Y D + L LSEEE + FY K+ ++ + G C M P G+ T
Sbjct: 241 ADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVT 299
>pdb|3BZG|A Chain A, Uvde Ph4.4
Length = 301
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 353 ASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGS----KISAMDQFI 408
SPDP+ + +++ L Y A+ + +GAED + LG K A+ +F+
Sbjct: 130 GSPDPEVVERSLAELRYSARLLSL---------LGAEDGVLVLHLGGAYGEKGKALRRFV 180
Query: 409 YKLQMENKLREKERNEAHDKLLKKEE 434
L+ E ++ E ++L EE
Sbjct: 181 ENLRGEEEVLRYLALENDERLWNVEE 206
>pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From
Enterococcus Faecalis Lacking Its C-Terminal Helix, With
Bound N5-(Phosphonoacetyl)-L-Ornithine
Length = 339
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 86 ADFGYRD--FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHT 142
ADF Y D + L LSEEE + FY K+ ++ + G C M P G+ T
Sbjct: 243 ADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVT 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,833,922
Number of Sequences: 62578
Number of extensions: 791629
Number of successful extensions: 1957
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1670
Number of HSP's gapped (non-prelim): 94
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)