Query 004553
Match_columns 745
No_of_seqs 333 out of 2208
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.6E-98 6E-103 869.6 27.3 666 1-707 1-716 (1041)
2 KOG4280 Kinesin-like protein [ 100.0 3.4E-82 7.3E-87 709.4 23.0 325 47-385 3-345 (574)
3 KOG0245 Kinesin-like protein [ 100.0 1.8E-81 3.9E-86 715.6 22.8 327 48-386 3-358 (1221)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 1.2E-76 2.7E-81 648.0 34.9 325 47-386 5-341 (607)
5 PLN03188 kinesin-12 family pro 100.0 1.3E-76 2.8E-81 694.1 36.5 318 47-385 96-443 (1320)
6 KOG0241 Kinesin-like protein [ 100.0 2.1E-74 4.5E-79 645.5 29.6 327 48-385 3-360 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 8.7E-74 1.9E-78 623.5 30.4 313 49-376 1-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 1.5E-73 3.2E-78 622.0 29.6 311 50-376 1-338 (338)
9 KOG0242 Kinesin-like protein [ 100.0 1.6E-73 3.4E-78 661.9 28.2 346 47-411 4-364 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.4E-72 3.1E-77 615.7 29.8 305 49-374 1-345 (345)
11 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.6E-71 3.5E-76 609.5 32.5 322 49-384 2-351 (352)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.4E-71 3E-76 610.8 30.1 320 49-383 1-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 8E-71 1.7E-75 599.6 31.4 313 49-376 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 6.6E-71 1.4E-75 597.6 28.7 307 49-374 1-322 (322)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 1.4E-69 2.9E-74 591.9 30.9 312 49-377 1-341 (341)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.3E-69 2.7E-74 588.5 30.3 312 49-376 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 2.3E-69 5E-74 584.9 30.5 306 50-374 1-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 4E-69 8.6E-74 583.6 30.0 308 50-376 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.2E-68 7E-73 579.3 30.1 306 50-374 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 9.7E-68 2.1E-72 574.6 31.8 316 48-378 1-328 (329)
21 KOG0247 Kinesin-like protein [ 100.0 4.2E-67 9.1E-72 585.1 37.1 330 41-382 23-442 (809)
22 smart00129 KISc Kinesin motor, 100.0 6.5E-66 1.4E-70 561.6 31.9 318 50-382 1-334 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 3.3E-67 7.1E-72 607.1 22.3 320 47-382 312-646 (670)
24 cd00106 KISc Kinesin motor dom 100.0 3.2E-64 7E-69 546.5 31.6 310 50-374 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 1.5E-64 3.2E-69 550.7 21.6 308 56-376 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 4E-63 8.6E-68 539.8 24.9 321 44-378 203-543 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.9E-62 4.2E-67 562.5 14.2 333 57-418 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1E-55 2.2E-60 508.7 33.5 318 44-384 17-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 7.2E-47 1.6E-51 379.2 15.6 168 109-355 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 97.0 4.3E-06 9.2E-11 97.9 -13.6 252 45-319 301-566 (568)
31 PF12718 Tropomyosin_1: Tropom 96.0 0.73 1.6E-05 44.7 17.8 122 399-520 14-138 (143)
32 COG0556 UvrB Helicase subunit 95.5 0.019 4.1E-07 65.5 5.5 91 92-190 4-101 (663)
33 COG1579 Zn-ribbon protein, pos 93.9 3.8 8.2E-05 43.1 17.4 48 403-450 35-82 (239)
34 PF09726 Macoilin: Transmembra 93.3 2.2 4.7E-05 51.7 16.5 28 401-428 420-447 (697)
35 KOG1029 Endocytic adaptor prot 93.1 2.4 5.1E-05 50.6 15.5 50 495-544 435-484 (1118)
36 PF00308 Bac_DnaA: Bacterial d 92.9 0.025 5.3E-07 58.6 -0.5 50 92-145 4-53 (219)
37 PF15619 Lebercilin: Ciliary p 92.8 7.4 0.00016 39.8 17.1 26 495-520 169-194 (194)
38 KOG0971 Microtubule-associated 92.8 3.7 7.9E-05 49.8 16.6 34 487-520 315-348 (1243)
39 PF12325 TMF_TATA_bd: TATA ele 92.5 8.1 0.00018 36.5 15.7 49 393-441 17-65 (120)
40 COG1579 Zn-ribbon protein, pos 92.2 6.6 0.00014 41.4 16.2 43 398-440 37-79 (239)
41 COG2805 PilT Tfp pilus assembl 91.8 0.077 1.7E-06 57.1 1.4 32 113-144 112-143 (353)
42 PF08317 Spc7: Spc7 kinetochor 91.7 12 0.00025 41.3 18.4 46 402-447 152-197 (325)
43 PF15070 GOLGA2L5: Putative go 91.5 5.3 0.00012 47.8 16.4 16 505-520 161-176 (617)
44 PF13851 GAS: Growth-arrest sp 91.4 19 0.0004 37.1 18.3 53 396-448 31-83 (201)
45 KOG3647 Predicted coiled-coil 91.2 8.6 0.00019 40.7 15.5 53 396-448 109-161 (338)
46 KOG0971 Microtubule-associated 90.8 16 0.00034 44.7 18.8 96 409-520 951-1049(1243)
47 PRK06893 DNA replication initi 90.6 0.18 3.9E-06 52.5 2.9 47 92-145 12-58 (229)
48 PF09726 Macoilin: Transmembra 90.1 15 0.00032 44.7 18.5 23 498-520 588-610 (697)
49 PF14662 CCDC155: Coiled-coil 89.8 16 0.00035 37.1 15.5 25 494-518 99-123 (193)
50 PRK11637 AmiB activator; Provi 89.6 18 0.00039 41.3 18.2 15 688-702 370-384 (428)
51 COG2804 PulE Type II secretory 89.5 0.14 3E-06 58.7 1.0 27 119-145 251-277 (500)
52 PRK09039 hypothetical protein; 89.3 16 0.00035 40.6 16.9 17 351-370 13-29 (343)
53 PRK06620 hypothetical protein; 89.3 0.23 5.1E-06 51.2 2.4 49 91-144 11-62 (214)
54 PRK14086 dnaA chromosomal repl 89.2 0.23 4.9E-06 58.8 2.4 51 91-145 283-333 (617)
55 COG2433 Uncharacterized conser 89.2 8.2 0.00018 45.3 14.7 31 151-183 164-194 (652)
56 PF07888 CALCOCO1: Calcium bin 88.9 8.3 0.00018 45.1 14.6 31 503-533 282-312 (546)
57 KOG0804 Cytoplasmic Zn-finger 88.7 12 0.00025 42.5 15.0 17 501-517 432-448 (493)
58 COG2433 Uncharacterized conser 88.7 5.9 0.00013 46.5 13.1 20 498-517 489-508 (652)
59 PF06785 UPF0242: Uncharacteri 88.5 14 0.0003 40.4 14.8 26 423-448 130-155 (401)
60 PF13851 GAS: Growth-arrest sp 88.4 17 0.00036 37.4 15.1 48 401-448 29-76 (201)
61 PRK12377 putative replication 88.4 0.31 6.8E-06 51.6 2.6 52 91-145 69-120 (248)
62 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.2 24 0.00053 33.6 17.5 25 494-518 95-119 (132)
63 KOG0963 Transcription factor/C 88.2 9.2 0.0002 45.0 14.3 114 416-534 238-353 (629)
64 PTZ00112 origin recognition co 88.1 0.5 1.1E-05 57.8 4.3 31 111-143 768-798 (1164)
65 PRK10884 SH3 domain-containing 88.0 8.7 0.00019 39.6 12.8 27 494-520 143-169 (206)
66 smart00787 Spc7 Spc7 kinetocho 87.4 46 0.00099 36.6 18.6 43 402-444 147-189 (312)
67 PF10481 CENP-F_N: Cenp-F N-te 87.4 22 0.00048 37.9 15.2 33 399-431 18-50 (307)
68 PRK08116 hypothetical protein; 87.4 0.3 6.6E-06 52.2 1.8 53 90-145 79-133 (268)
69 PF10168 Nup88: Nuclear pore c 87.2 31 0.00068 42.2 18.8 15 48-62 124-138 (717)
70 PF10168 Nup88: Nuclear pore c 87.2 11 0.00024 45.9 15.0 26 495-520 644-669 (717)
71 TIGR02169 SMC_prok_A chromosom 86.9 25 0.00054 44.9 18.9 14 130-143 27-40 (1164)
72 PF07888 CALCOCO1: Calcium bin 86.9 46 0.001 39.2 19.0 7 689-695 502-508 (546)
73 TIGR02169 SMC_prok_A chromosom 86.9 25 0.00055 44.8 18.9 9 279-287 160-168 (1164)
74 PRK09039 hypothetical protein; 86.8 44 0.00096 37.2 18.4 14 400-413 47-60 (343)
75 PRK14088 dnaA chromosomal repl 86.8 0.43 9.3E-06 54.7 2.8 50 91-145 100-149 (440)
76 PRK11637 AmiB activator; Provi 86.8 43 0.00093 38.2 18.9 39 405-443 81-119 (428)
77 PRK07952 DNA replication prote 86.7 0.54 1.2E-05 49.7 3.2 52 91-145 67-118 (244)
78 PF05667 DUF812: Protein of un 86.4 28 0.00061 41.6 17.5 52 528-592 478-529 (594)
79 PF04111 APG6: Autophagy prote 86.3 16 0.00034 40.2 14.4 29 497-525 106-134 (314)
80 PF01486 K-box: K-box region; 86.2 6.2 0.00014 35.7 9.4 49 466-514 51-99 (100)
81 KOG0250 DNA repair protein RAD 86.1 25 0.00054 44.1 17.0 15 130-144 66-80 (1074)
82 KOG0994 Extracellular matrix g 85.9 23 0.0005 44.5 16.2 55 466-520 1691-1747(1758)
83 PF00261 Tropomyosin: Tropomyo 85.9 37 0.0008 35.6 16.4 47 401-447 3-49 (237)
84 PF04851 ResIII: Type III rest 85.7 0.53 1.2E-05 45.7 2.4 37 105-145 7-44 (184)
85 PRK00149 dnaA chromosomal repl 85.6 0.53 1.2E-05 54.0 2.7 51 91-145 117-167 (450)
86 KOG0804 Cytoplasmic Zn-finger 85.5 39 0.00085 38.5 16.8 22 499-520 423-444 (493)
87 TIGR00362 DnaA chromosomal rep 85.2 0.64 1.4E-05 52.5 3.1 50 91-144 105-154 (405)
88 PRK05642 DNA replication initi 85.2 0.72 1.6E-05 48.2 3.2 19 127-145 46-64 (234)
89 KOG2991 Splicing regulator [RN 85.1 24 0.00053 37.2 14.0 41 494-534 214-259 (330)
90 PF15619 Lebercilin: Ciliary p 84.9 49 0.0011 33.9 18.0 116 396-520 16-148 (194)
91 PF04156 IncA: IncA protein; 84.9 45 0.00098 33.4 16.9 35 400-434 82-116 (191)
92 PRK09087 hypothetical protein; 84.7 0.53 1.1E-05 49.1 1.9 46 92-144 17-62 (226)
93 PF10186 Atg14: UV radiation r 84.4 59 0.0013 34.6 17.6 27 682-708 254-280 (302)
94 KOG0161 Myosin class II heavy 84.2 36 0.00078 45.8 18.2 19 123-141 165-183 (1930)
95 PF10473 CENP-F_leu_zip: Leuci 84.1 43 0.00093 32.5 15.9 48 398-445 23-70 (140)
96 PRK06526 transposase; Provisio 84.1 0.57 1.2E-05 49.8 1.9 46 92-145 72-117 (254)
97 PF12128 DUF3584: Protein of u 84.0 34 0.00074 44.4 18.1 24 140-163 170-193 (1201)
98 PF15397 DUF4618: Domain of un 83.9 65 0.0014 34.5 17.3 27 494-520 190-216 (258)
99 KOG0977 Nuclear envelope prote 83.6 20 0.00043 42.1 14.1 29 398-426 161-189 (546)
100 PF08614 ATG16: Autophagy prot 83.3 13 0.00027 37.9 11.2 20 494-513 162-181 (194)
101 PF11559 ADIP: Afadin- and alp 83.2 46 0.001 32.2 14.8 15 499-513 135-149 (151)
102 PRK14087 dnaA chromosomal repl 82.7 0.86 1.9E-05 52.4 2.8 50 92-145 111-160 (450)
103 cd00009 AAA The AAA+ (ATPases 82.7 0.83 1.8E-05 41.9 2.2 19 125-143 18-36 (151)
104 PF09730 BicD: Microtubule-ass 82.5 37 0.0008 41.4 16.2 31 404-434 32-62 (717)
105 PRK08727 hypothetical protein; 82.4 0.79 1.7E-05 47.8 2.1 18 128-145 43-60 (233)
106 KOG4643 Uncharacterized coiled 82.3 15 0.00032 45.4 12.7 51 396-446 174-224 (1195)
107 PF09755 DUF2046: Uncharacteri 82.3 83 0.0018 34.5 19.0 12 507-518 181-192 (310)
108 PRK08939 primosomal protein Dn 82.2 0.81 1.8E-05 50.0 2.2 52 92-145 123-175 (306)
109 PF12718 Tropomyosin_1: Tropom 82.1 52 0.0011 32.0 16.9 9 505-513 130-138 (143)
110 KOG1029 Endocytic adaptor prot 82.0 48 0.001 40.2 16.2 24 497-520 423-446 (1118)
111 PF10473 CENP-F_leu_zip: Leuci 81.9 52 0.0011 32.0 16.8 47 401-447 19-65 (140)
112 KOG2991 Splicing regulator [RN 81.9 75 0.0016 33.7 16.1 51 469-520 251-301 (330)
113 PRK10436 hypothetical protein; 81.8 0.55 1.2E-05 54.1 0.7 25 121-145 213-237 (462)
114 KOG4674 Uncharacterized conser 81.7 53 0.0011 43.8 18.0 40 410-449 1261-1300(1822)
115 PF00261 Tropomyosin: Tropomyo 81.5 74 0.0016 33.4 18.4 26 495-520 202-227 (237)
116 PF10211 Ax_dynein_light: Axon 81.5 41 0.0009 34.2 14.1 23 492-514 165-187 (189)
117 PF04147 Nop14: Nop14-like fam 81.0 4.8 0.0001 50.0 8.5 46 399-444 181-226 (840)
118 PF08317 Spc7: Spc7 kinetochor 80.9 63 0.0014 35.6 16.4 48 397-444 154-201 (325)
119 TIGR00606 rad50 rad50. This fa 80.8 46 0.00099 43.7 17.6 30 494-523 885-914 (1311)
120 PRK06835 DNA replication prote 80.5 0.88 1.9E-05 50.2 1.8 37 107-145 166-202 (329)
121 TIGR02538 type_IV_pilB type IV 80.5 0.59 1.3E-05 55.3 0.4 28 118-145 308-335 (564)
122 PRK06921 hypothetical protein; 80.5 1.2 2.7E-05 47.5 2.8 53 92-145 80-136 (266)
123 PF04156 IncA: IncA protein; 80.4 67 0.0015 32.2 15.5 19 500-518 168-186 (191)
124 PF04849 HAP1_N: HAP1 N-termin 80.2 55 0.0012 35.8 15.1 33 402-434 163-195 (306)
125 TIGR03420 DnaA_homol_Hda DnaA 80.1 1.3 2.9E-05 45.2 2.8 46 92-144 11-56 (226)
126 KOG0250 DNA repair protein RAD 80.0 79 0.0017 39.9 17.9 21 500-520 439-459 (1074)
127 PRK08903 DnaA regulatory inact 79.8 1.5 3.3E-05 45.1 3.1 48 91-144 13-60 (227)
128 cd00046 DEXDc DEAD-like helica 79.7 0.76 1.7E-05 41.6 0.8 17 129-145 3-19 (144)
129 PF10174 Cast: RIM-binding pro 79.7 85 0.0018 38.8 18.1 26 495-520 463-488 (775)
130 KOG0996 Structural maintenance 79.6 41 0.00088 42.6 15.2 12 132-143 114-125 (1293)
131 PF02841 GBP_C: Guanylate-bind 79.6 67 0.0015 34.8 15.9 14 503-516 283-296 (297)
132 KOG0161 Myosin class II heavy 79.5 66 0.0014 43.4 18.1 44 401-444 840-883 (1930)
133 COG1196 Smc Chromosome segrega 79.4 85 0.0018 40.7 19.2 20 681-700 1056-1075(1163)
134 COG1474 CDC6 Cdc6-related prot 79.4 1.4 3.1E-05 49.3 3.0 17 127-143 43-59 (366)
135 TIGR02533 type_II_gspE general 79.3 0.78 1.7E-05 53.3 0.9 28 118-145 234-261 (486)
136 TIGR02928 orc1/cdc6 family rep 79.2 1.5 3.2E-05 48.4 3.1 20 124-143 38-57 (365)
137 KOG0980 Actin-binding protein 79.0 1.2E+02 0.0025 37.6 18.4 40 401-440 360-399 (980)
138 PF13245 AAA_19: Part of AAA d 79.0 0.86 1.9E-05 39.3 0.8 19 126-144 10-28 (76)
139 COG0593 DnaA ATPase involved i 78.9 1.2 2.5E-05 50.5 2.1 50 91-144 82-131 (408)
140 PF09731 Mitofilin: Mitochondr 78.9 92 0.002 37.0 18.1 14 565-578 429-442 (582)
141 PRK08084 DNA replication initi 78.8 1 2.2E-05 47.1 1.5 47 92-145 18-64 (235)
142 PRK10361 DNA recombination pro 78.6 1.2E+02 0.0025 35.5 17.8 50 471-520 143-195 (475)
143 PRK00411 cdc6 cell division co 78.6 1.7 3.7E-05 48.5 3.3 20 124-143 53-72 (394)
144 PF14662 CCDC155: Coiled-coil 78.5 83 0.0018 32.1 17.2 26 498-523 166-191 (193)
145 KOG0996 Structural maintenance 78.3 65 0.0014 40.9 16.4 18 503-520 906-923 (1293)
146 KOG0995 Centromere-associated 78.3 56 0.0012 38.4 15.1 11 155-165 107-117 (581)
147 COG3937 Uncharacterized conser 78.1 27 0.00059 32.2 10.1 23 498-520 84-106 (108)
148 TIGR03752 conj_TIGR03752 integ 78.0 24 0.00053 40.6 12.1 28 493-520 112-139 (472)
149 PF01935 DUF87: Domain of unkn 77.8 0.87 1.9E-05 46.9 0.6 15 130-144 27-41 (229)
150 cd01131 PilT Pilus retraction 77.8 0.91 2E-05 46.2 0.8 19 126-144 1-19 (198)
151 PF09731 Mitofilin: Mitochondr 77.7 1.3E+02 0.0028 35.8 18.9 9 680-688 524-532 (582)
152 PRK04863 mukB cell division pr 77.6 82 0.0018 41.9 18.2 17 128-144 29-45 (1486)
153 COG1196 Smc Chromosome segrega 77.4 81 0.0018 40.9 18.2 8 91-98 110-117 (1163)
154 PF04111 APG6: Autophagy prote 77.4 50 0.0011 36.3 14.1 24 495-518 111-134 (314)
155 KOG2751 Beclin-like protein [S 77.4 70 0.0015 36.4 15.1 20 358-377 107-126 (447)
156 COG5008 PilU Tfp pilus assembl 77.3 1.5 3.2E-05 46.8 2.1 31 114-144 115-145 (375)
157 PRK08181 transposase; Validate 77.3 2.2 4.8E-05 45.7 3.6 21 123-145 105-125 (269)
158 TIGR01843 type_I_hlyD type I s 76.8 1.2E+02 0.0027 33.7 17.7 27 494-520 243-269 (423)
159 KOG0980 Actin-binding protein 76.8 1.4E+02 0.003 37.0 18.1 44 405-448 357-400 (980)
160 PF10481 CENP-F_N: Cenp-F N-te 76.8 1.1E+02 0.0024 32.8 16.1 40 405-444 17-56 (307)
161 PF13401 AAA_22: AAA domain; P 76.6 0.82 1.8E-05 42.3 0.1 18 126-143 4-21 (131)
162 PF00038 Filament: Intermediat 76.1 1.2E+02 0.0026 32.8 18.1 19 357-375 164-184 (312)
163 PF10205 KLRAQ: Predicted coil 76.0 26 0.00057 32.1 9.4 28 494-521 44-71 (102)
164 PF05667 DUF812: Protein of un 75.9 73 0.0016 38.2 15.8 30 495-524 452-481 (594)
165 KOG0249 LAR-interacting protei 75.8 68 0.0015 38.7 15.0 23 423-445 166-188 (916)
166 TIGR01420 pilT_fam pilus retra 75.7 1.2 2.6E-05 49.3 1.1 19 126-144 122-140 (343)
167 KOG4643 Uncharacterized coiled 75.7 77 0.0017 39.6 15.8 17 501-517 541-557 (1195)
168 PF12128 DUF3584: Protein of u 75.7 1E+02 0.0023 40.1 18.5 45 123-167 78-133 (1201)
169 smart00382 AAA ATPases associa 75.7 1.1 2.4E-05 40.4 0.7 19 127-145 3-21 (148)
170 PF00270 DEAD: DEAD/DEAH box h 75.4 1.2 2.6E-05 42.8 0.9 22 121-144 11-32 (169)
171 TIGR02525 plasmid_TraJ plasmid 75.3 1.3 2.8E-05 49.7 1.2 20 125-144 148-167 (372)
172 TIGR02524 dot_icm_DotB Dot/Icm 75.0 1.3 2.8E-05 49.4 1.1 20 125-144 133-152 (358)
173 KOG0977 Nuclear envelope prote 74.9 65 0.0014 38.0 14.6 9 335-343 74-82 (546)
174 smart00787 Spc7 Spc7 kinetocho 74.8 1.4E+02 0.003 32.9 17.0 46 397-442 149-194 (312)
175 PF10234 Cluap1: Clusterin-ass 74.7 71 0.0015 34.3 13.9 53 397-449 167-219 (267)
176 KOG1144 Translation initiation 74.6 72 0.0016 38.9 14.9 10 676-685 445-454 (1064)
177 KOG0994 Extracellular matrix g 74.5 1E+02 0.0023 39.1 16.5 43 401-443 1593-1635(1758)
178 PRK01297 ATP-dependent RNA hel 74.5 7.7 0.00017 44.7 7.3 25 117-143 117-141 (475)
179 KOG0946 ER-Golgi vesicle-tethe 74.3 1.4E+02 0.0029 36.8 17.1 21 499-519 808-828 (970)
180 PRK03918 chromosome segregatio 74.1 1.4E+02 0.0031 37.1 18.8 14 130-143 27-40 (880)
181 PF12325 TMF_TATA_bd: TATA ele 74.0 81 0.0018 29.8 14.1 46 399-444 16-61 (120)
182 PF00038 Filament: Intermediat 73.9 1.2E+02 0.0026 32.8 16.1 11 502-512 267-277 (312)
183 PF00437 T2SE: Type II/IV secr 73.9 1.2 2.5E-05 47.3 0.3 18 126-143 127-144 (270)
184 COG4942 Membrane-bound metallo 73.7 1.7E+02 0.0037 33.5 17.9 23 561-583 285-307 (420)
185 PF12846 AAA_10: AAA-like doma 73.7 1.3 2.8E-05 46.7 0.7 19 126-144 1-19 (304)
186 PF06309 Torsin: Torsin; Inte 73.4 2.9 6.2E-05 39.9 2.8 27 127-163 53-80 (127)
187 COG1842 PspA Phage shock prote 73.4 1.2E+02 0.0027 31.7 18.5 116 395-519 27-142 (225)
188 PF01695 IstB_IS21: IstB-like 73.2 2 4.4E-05 43.0 1.9 19 127-145 48-66 (178)
189 PRK02224 chromosome segregatio 73.1 82 0.0018 39.3 16.3 13 130-142 27-39 (880)
190 PRK12422 chromosomal replicati 73.0 2.5 5.4E-05 48.6 2.8 51 91-145 106-160 (445)
191 COG3883 Uncharacterized protei 72.9 1.4E+02 0.003 32.1 17.6 42 399-440 52-93 (265)
192 PRK03918 chromosome segregatio 72.9 1.2E+02 0.0025 37.9 17.5 9 234-242 111-119 (880)
193 PHA02562 46 endonuclease subun 72.9 91 0.002 36.6 15.9 17 127-143 28-44 (562)
194 PF04012 PspA_IM30: PspA/IM30 72.8 1.2E+02 0.0026 31.2 18.3 49 395-443 26-74 (221)
195 PF09789 DUF2353: Uncharacteri 72.8 1.6E+02 0.0034 32.6 16.5 31 490-520 196-226 (319)
196 TIGR01843 type_I_hlyD type I s 72.7 1.6E+02 0.0036 32.8 19.6 20 501-520 243-262 (423)
197 PRK00409 recombination and DNA 72.7 95 0.0021 38.5 16.3 12 132-143 213-224 (782)
198 KOG0288 WD40 repeat protein Ti 72.6 1.2E+02 0.0026 34.4 15.3 53 397-449 18-70 (459)
199 cd01129 PulE-GspE PulE/GspE Th 72.5 1.6 3.5E-05 46.6 1.0 24 121-144 75-98 (264)
200 KOG0989 Replication factor C, 72.4 2.5 5.4E-05 46.0 2.4 18 127-144 58-75 (346)
201 PF10146 zf-C4H2: Zinc finger- 72.1 1.4E+02 0.0029 31.5 16.2 29 492-520 76-105 (230)
202 COG1484 DnaC DNA replication p 72.0 3 6.6E-05 44.3 2.9 38 105-145 87-124 (254)
203 PRK10361 DNA recombination pro 71.7 2.1E+02 0.0044 33.5 18.7 12 506-517 167-178 (475)
204 TIGR03015 pepcterm_ATPase puta 71.7 2.6 5.6E-05 44.2 2.4 21 123-143 40-60 (269)
205 PF05970 PIF1: PIF1-like helic 71.5 3.4 7.3E-05 46.2 3.3 37 103-143 3-39 (364)
206 KOG0995 Centromere-associated 71.4 1.8E+02 0.0039 34.4 16.8 21 500-520 370-390 (581)
207 PF13604 AAA_30: AAA domain; P 71.3 1.6 3.5E-05 44.3 0.6 23 122-144 14-36 (196)
208 KOG0999 Microtubule-associated 71.1 2.2E+02 0.0048 33.6 17.5 15 505-519 195-209 (772)
209 PF13191 AAA_16: AAA ATPase do 70.9 2.1 4.5E-05 41.8 1.3 28 116-143 14-41 (185)
210 PF11932 DUF3450: Protein of u 70.9 1.5E+02 0.0031 31.4 17.1 14 507-520 149-162 (251)
211 PF15070 GOLGA2L5: Putative go 70.7 2.3E+02 0.0051 34.2 18.4 18 397-414 85-102 (617)
212 PF07798 DUF1640: Protein of u 70.6 1.2E+02 0.0026 30.3 16.6 10 365-374 3-12 (177)
213 TIGR00631 uvrb excinuclease AB 70.5 4.3 9.3E-05 49.0 4.1 84 100-190 8-98 (655)
214 PHA02562 46 endonuclease subun 70.5 1.3E+02 0.0028 35.4 16.4 21 499-519 381-401 (562)
215 PF10174 Cast: RIM-binding pro 70.3 2E+02 0.0043 35.7 17.9 45 402-446 283-327 (775)
216 PF07106 TBPIP: Tat binding pr 70.2 1E+02 0.0022 30.5 13.2 53 397-449 77-138 (169)
217 PF15290 Syntaphilin: Golgi-lo 70.1 1.4E+02 0.003 32.3 14.3 31 407-437 69-99 (305)
218 KOG0976 Rho/Rac1-interacting s 69.9 2E+02 0.0042 35.4 16.9 23 499-521 216-238 (1265)
219 PRK00409 recombination and DNA 69.5 1.4E+02 0.003 37.1 16.8 8 734-741 774-781 (782)
220 PF09755 DUF2046: Uncharacteri 69.3 1.8E+02 0.0039 31.9 17.5 34 397-430 25-58 (310)
221 PF15254 CCDC14: Coiled-coil d 69.3 1.4E+02 0.003 36.5 15.7 15 668-682 687-701 (861)
222 TIGR00606 rad50 rad50. This fa 69.1 1.1E+02 0.0023 40.4 16.5 9 153-161 171-179 (1311)
223 TIGR02977 phageshock_pspA phag 68.9 1.5E+02 0.0032 30.7 16.0 45 396-440 28-72 (219)
224 PF06005 DUF904: Protein of un 68.8 41 0.00088 28.9 8.5 47 396-442 8-54 (72)
225 PF00448 SRP54: SRP54-type pro 68.8 1.8 4E-05 44.1 0.4 17 128-144 3-19 (196)
226 PF01637 Arch_ATPase: Archaeal 68.6 2.3 4.9E-05 42.9 1.1 25 119-143 13-37 (234)
227 TIGR01069 mutS2 MutS2 family p 68.6 1.3E+02 0.0028 37.3 16.2 12 132-143 208-219 (771)
228 PF00004 AAA: ATPase family as 68.4 2 4.2E-05 39.4 0.5 15 129-143 1-15 (132)
229 PRK04863 mukB cell division pr 68.3 1.9E+02 0.004 38.7 18.2 13 330-342 211-223 (1486)
230 PRK04778 septation ring format 68.3 2.6E+02 0.0057 33.3 18.9 17 302-318 201-217 (569)
231 PRK02224 chromosome segregatio 68.0 2.1E+02 0.0045 35.8 18.3 21 500-520 380-400 (880)
232 COG1842 PspA Phage shock prote 67.7 1.6E+02 0.0036 30.8 14.9 25 496-520 112-136 (225)
233 TIGR01069 mutS2 MutS2 family p 67.7 92 0.002 38.6 14.7 15 129-143 325-339 (771)
234 KOG0982 Centrosomal protein Nu 67.7 1.7E+02 0.0037 33.4 15.1 16 426-441 303-318 (502)
235 PF13479 AAA_24: AAA domain 67.4 2.6 5.6E-05 43.4 1.2 20 126-145 3-22 (213)
236 PF04849 HAP1_N: HAP1 N-termin 67.4 1.1E+02 0.0025 33.4 13.6 20 396-415 164-183 (306)
237 COG4942 Membrane-bound metallo 67.3 2.4E+02 0.0051 32.4 18.1 12 691-702 365-376 (420)
238 KOG2543 Origin recognition com 67.2 2.5 5.4E-05 47.2 1.1 41 126-188 30-70 (438)
239 smart00487 DEXDc DEAD-like hel 67.0 4 8.6E-05 39.4 2.4 18 128-145 26-43 (201)
240 PF04012 PspA_IM30: PspA/IM30 66.9 1.6E+02 0.0034 30.3 15.9 49 401-449 25-73 (221)
241 PF10212 TTKRSYEDQ: Predicted 66.8 1.6E+02 0.0034 34.6 15.2 21 425-445 432-452 (518)
242 COG4026 Uncharacterized protei 66.7 1.4E+02 0.0031 31.1 13.3 27 494-520 181-207 (290)
243 KOG4673 Transcription factor T 66.7 2.3E+02 0.005 34.3 16.5 15 327-341 435-449 (961)
244 PF09730 BicD: Microtubule-ass 66.6 2.6E+02 0.0057 34.3 17.7 50 399-448 265-321 (717)
245 COG3883 Uncharacterized protei 65.8 2E+02 0.0043 31.0 18.4 38 397-434 57-94 (265)
246 PF13207 AAA_17: AAA domain; P 65.5 2.5 5.4E-05 38.6 0.6 16 128-143 1-16 (121)
247 KOG4360 Uncharacterized coiled 65.5 2E+02 0.0044 33.6 15.4 15 301-315 81-95 (596)
248 PRK13894 conjugal transfer ATP 65.4 3.1 6.7E-05 45.8 1.4 19 126-144 148-166 (319)
249 KOG2147 Nucleolar protein invo 65.3 28 0.0006 42.0 9.0 46 399-444 186-231 (823)
250 PTZ00361 26 proteosome regulat 65.1 8.8 0.00019 44.1 5.0 49 94-143 181-234 (438)
251 PF11932 DUF3450: Protein of u 64.6 1.7E+02 0.0037 30.8 14.4 9 512-520 132-140 (251)
252 PF13086 AAA_11: AAA domain; P 64.6 3.2 6.9E-05 41.8 1.3 18 128-145 19-36 (236)
253 PRK12402 replication factor C 64.5 4.2 9.1E-05 44.2 2.2 21 124-144 34-54 (337)
254 PRK09183 transposase/IS protei 64.5 4.5 9.8E-05 43.0 2.4 21 123-145 101-121 (259)
255 COG4026 Uncharacterized protei 64.1 80 0.0017 32.9 10.9 6 513-518 215-220 (290)
256 COG1201 Lhr Lhr-like helicases 64.1 12 0.00025 46.2 6.0 45 100-163 21-65 (814)
257 KOG0933 Structural maintenance 63.9 3.4E+02 0.0073 34.5 17.7 25 89-114 111-135 (1174)
258 TIGR02782 TrbB_P P-type conjug 63.8 2.9 6.2E-05 45.5 0.8 19 126-144 132-150 (299)
259 TIGR02680 conserved hypothetic 63.7 2E+02 0.0044 38.0 17.4 21 322-342 194-216 (1353)
260 PF15066 CAGE1: Cancer-associa 63.3 2.1E+02 0.0044 33.1 14.8 12 361-372 316-327 (527)
261 PRK03992 proteasome-activating 63.3 3.5 7.5E-05 46.6 1.3 51 92-143 127-182 (389)
262 TIGR03499 FlhF flagellar biosy 63.2 6.5 0.00014 42.4 3.3 18 128-145 196-213 (282)
263 PRK12723 flagellar biosynthesi 63.2 5.9 0.00013 44.8 3.1 19 126-144 174-192 (388)
264 COG5185 HEC1 Protein involved 63.1 1.9E+02 0.0041 33.4 14.5 29 499-527 405-433 (622)
265 PF00769 ERM: Ezrin/radixin/mo 63.0 2.1E+02 0.0045 30.3 16.5 26 495-520 101-126 (246)
266 KOG0163 Myosin class VI heavy 62.5 3.7E+02 0.0081 33.0 17.4 17 126-142 144-160 (1259)
267 KOG4572 Predicted DNA-binding 62.2 1.6E+02 0.0034 36.2 14.2 32 489-520 1001-1032(1424)
268 PRK13851 type IV secretion sys 62.2 4.6 9.9E-05 44.9 2.0 19 126-144 162-180 (344)
269 KOG0999 Microtubule-associated 61.8 2.2E+02 0.0047 33.6 14.8 26 397-422 105-130 (772)
270 KOG0978 E3 ubiquitin ligase in 61.8 3.7E+02 0.0079 32.9 17.5 25 496-520 586-610 (698)
271 PF12004 DUF3498: Domain of un 61.8 2.6 5.7E-05 48.8 0.0 38 402-439 372-409 (495)
272 PF06785 UPF0242: Uncharacteri 61.7 2.6E+02 0.0056 31.0 14.9 19 502-520 199-217 (401)
273 PRK10884 SH3 domain-containing 61.6 1E+02 0.0022 31.8 11.6 24 497-520 139-162 (206)
274 KOG0993 Rab5 GTPase effector R 61.6 96 0.0021 35.0 11.7 26 495-520 160-185 (542)
275 PHA00729 NTP-binding motif con 61.5 5.4 0.00012 41.8 2.2 31 115-145 6-36 (226)
276 PRK06547 hypothetical protein; 61.3 5.7 0.00012 39.6 2.3 29 115-143 4-32 (172)
277 PF10267 Tmemb_cc2: Predicted 61.2 2E+02 0.0043 32.8 14.6 23 495-517 296-318 (395)
278 KOG0926 DEAH-box RNA helicase 61.2 5.3 0.00012 48.3 2.3 28 126-153 271-308 (1172)
279 KOG0288 WD40 repeat protein Ti 61.1 2.3E+02 0.005 32.3 14.6 46 401-446 8-53 (459)
280 CHL00081 chlI Mg-protoporyphyr 61.1 3.8 8.2E-05 45.7 1.1 43 92-143 13-55 (350)
281 KOG2077 JNK/SAPK-associated pr 60.9 1.8E+02 0.0038 34.4 14.0 38 409-446 339-376 (832)
282 PF01580 FtsK_SpoIIIE: FtsK/Sp 60.7 3 6.6E-05 42.2 0.2 17 128-144 40-56 (205)
283 PF13671 AAA_33: AAA domain; P 60.7 3.6 7.8E-05 38.6 0.7 16 128-143 1-16 (143)
284 KOG0976 Rho/Rac1-interacting s 60.6 2E+02 0.0044 35.3 14.8 15 307-321 42-56 (1265)
285 PRK12704 phosphodiesterase; Pr 60.4 2.2E+02 0.0049 33.6 15.5 10 555-564 211-220 (520)
286 TIGR01242 26Sp45 26S proteasom 60.3 3.1 6.8E-05 46.3 0.3 51 92-143 118-173 (364)
287 PF05701 WEMBL: Weak chloropla 59.9 3.1E+02 0.0066 32.4 16.6 10 132-141 14-23 (522)
288 PF02841 GBP_C: Guanylate-bind 59.9 1.6E+02 0.0034 32.0 13.4 13 508-520 281-293 (297)
289 PF00910 RNA_helicase: RNA hel 59.6 3.1 6.7E-05 37.9 0.1 15 129-143 1-15 (107)
290 PF09738 DUF2051: Double stran 59.4 1.9E+02 0.0042 31.7 13.7 27 494-520 144-170 (302)
291 PF02562 PhoH: PhoH-like prote 58.9 5.2 0.00011 41.2 1.6 28 126-162 19-46 (205)
292 COG5185 HEC1 Protein involved 58.5 3.5E+02 0.0075 31.4 16.1 30 456-485 319-351 (622)
293 COG1222 RPT1 ATP-dependent 26S 58.3 15 0.00032 41.0 5.0 89 51-141 95-200 (406)
294 PRK00106 hypothetical protein; 58.2 3.8E+02 0.0083 31.8 16.8 10 555-564 226-235 (535)
295 cd01130 VirB11-like_ATPase Typ 58.0 5.1 0.00011 40.2 1.3 17 127-143 26-42 (186)
296 COG1223 Predicted ATPase (AAA+ 57.8 4.5 9.7E-05 43.2 0.9 16 128-143 153-168 (368)
297 PF06637 PV-1: PV-1 protein (P 57.8 2.7E+02 0.0059 31.4 14.3 26 495-520 354-379 (442)
298 PF07724 AAA_2: AAA domain (Cd 57.4 4.9 0.00011 40.0 1.1 17 127-143 4-20 (171)
299 PF09789 DUF2353: Uncharacteri 57.4 2.9E+02 0.0064 30.5 14.6 37 499-535 191-227 (319)
300 PRK13833 conjugal transfer pro 57.3 4.2 9.1E-05 44.8 0.6 18 127-144 145-162 (323)
301 PLN00020 ribulose bisphosphate 57.2 8.1 0.00018 43.5 2.8 51 91-142 110-164 (413)
302 COG4962 CpaF Flp pilus assembl 56.9 5.2 0.00011 44.3 1.2 18 127-144 174-191 (355)
303 KOG0612 Rho-associated, coiled 56.9 1.7E+02 0.0037 37.6 14.0 29 130-160 223-251 (1317)
304 KOG4001 Axonemal dynein light 56.8 98 0.0021 31.8 10.0 24 491-514 229-252 (259)
305 PF00580 UvrD-helicase: UvrD/R 56.8 3.6 7.7E-05 43.7 -0.0 30 125-163 12-41 (315)
306 PF15066 CAGE1: Cancer-associa 56.7 3.7E+02 0.008 31.2 15.6 10 497-506 492-501 (527)
307 PF06818 Fez1: Fez1; InterPro 56.7 1.2E+02 0.0026 31.3 10.8 17 400-416 11-27 (202)
308 PF03215 Rad17: Rad17 cell cyc 56.6 5.7 0.00012 46.6 1.6 30 114-143 31-62 (519)
309 KOG4674 Uncharacterized conser 56.5 4.6E+02 0.0099 35.6 18.2 25 496-520 857-881 (1822)
310 KOG4593 Mitotic checkpoint pro 56.5 4.5E+02 0.0097 32.0 17.5 27 494-520 296-322 (716)
311 PF13863 DUF4200: Domain of un 56.4 1.7E+02 0.0037 27.2 11.7 26 495-520 79-104 (126)
312 PRK04778 septation ring format 56.4 3.7E+02 0.008 32.1 16.7 26 495-520 402-427 (569)
313 PRK10536 hypothetical protein; 56.4 8.1 0.00017 41.3 2.5 41 92-143 51-91 (262)
314 COG1322 Predicted nuclease of 56.1 3.8E+02 0.0082 31.1 16.8 29 494-522 161-189 (448)
315 PF05673 DUF815: Protein of un 56.1 8.5 0.00018 40.8 2.6 45 93-143 24-69 (249)
316 PHA02544 44 clamp loader, smal 56.0 5.9 0.00013 42.8 1.5 19 126-144 43-61 (316)
317 KOG0163 Myosin class VI heavy 56.0 1.7E+02 0.0038 35.7 13.2 14 152-165 428-441 (1259)
318 KOG0933 Structural maintenance 55.8 5.4E+02 0.012 32.8 17.7 8 737-744 1066-1073(1174)
319 PRK03947 prefoldin subunit alp 55.7 1.9E+02 0.0041 27.6 11.7 26 494-519 112-137 (140)
320 cd00268 DEADc DEAD-box helicas 55.7 6.2 0.00014 39.4 1.5 20 121-142 33-52 (203)
321 PF06160 EzrA: Septation ring 55.7 3.2E+02 0.0069 32.6 15.9 45 400-444 109-153 (560)
322 PRK14722 flhF flagellar biosyn 55.7 5.4 0.00012 44.8 1.2 19 126-144 137-155 (374)
323 KOG0738 AAA+-type ATPase [Post 55.5 37 0.0008 38.4 7.4 31 110-140 225-259 (491)
324 PRK04406 hypothetical protein; 55.5 83 0.0018 27.2 8.1 41 472-520 15-55 (75)
325 TIGR02231 conserved hypothetic 55.4 1.1E+02 0.0024 35.9 12.1 69 496-564 144-217 (525)
326 PF06705 SF-assemblin: SF-asse 55.4 2.7E+02 0.0059 29.3 17.6 30 401-430 36-65 (247)
327 KOG1899 LAR transmembrane tyro 55.3 1.8E+02 0.004 34.7 13.1 27 685-714 491-517 (861)
328 KOG4673 Transcription factor T 55.2 2.9E+02 0.0063 33.5 14.7 30 498-527 531-560 (961)
329 PTZ00424 helicase 45; Provisio 55.2 5.2 0.00011 44.7 0.9 23 119-143 60-82 (401)
330 PRK11448 hsdR type I restricti 55.2 6.8 0.00015 50.2 2.0 29 116-145 424-452 (1123)
331 PF10267 Tmemb_cc2: Predicted 55.1 1.5E+02 0.0032 33.8 12.2 53 458-510 263-318 (395)
332 PRK13900 type IV secretion sys 55.0 7 0.00015 43.2 1.9 17 127-143 161-177 (332)
333 KOG2077 JNK/SAPK-associated pr 54.9 4.3E+02 0.0093 31.4 15.7 17 427-443 329-345 (832)
334 KOG1853 LIS1-interacting prote 54.9 2.9E+02 0.0063 29.4 16.1 23 502-524 162-184 (333)
335 PF04102 SlyX: SlyX; InterPro 54.9 62 0.0013 27.4 7.2 41 406-446 4-44 (69)
336 COG1419 FlhF Flagellar GTP-bin 54.7 8.9 0.00019 43.4 2.6 19 126-144 203-221 (407)
337 PF05622 HOOK: HOOK protein; 54.6 4.1 8.9E-05 49.7 0.0 45 400-444 240-284 (713)
338 KOG4809 Rab6 GTPase-interactin 54.5 2.6E+02 0.0056 33.0 13.9 12 260-271 150-161 (654)
339 PF05700 BCAS2: Breast carcino 54.4 2E+02 0.0043 29.9 12.5 21 497-517 196-216 (221)
340 PRK11776 ATP-dependent RNA hel 54.4 6.3 0.00014 45.2 1.5 22 120-143 37-58 (460)
341 PF14182 YgaB: YgaB-like prote 54.4 1.4E+02 0.003 26.2 9.1 43 474-519 20-62 (79)
342 PF07728 AAA_5: AAA domain (dy 54.4 4.4 9.5E-05 38.1 0.1 15 129-143 2-16 (139)
343 PRK13764 ATPase; Provisional 54.2 5.2 0.00011 47.7 0.8 20 126-145 257-276 (602)
344 PF06414 Zeta_toxin: Zeta toxi 54.0 5.9 0.00013 40.1 1.0 19 125-143 14-32 (199)
345 PF05911 DUF869: Plant protein 53.9 3.3E+02 0.0072 33.8 15.8 18 503-520 672-689 (769)
346 PF12777 MT: Microtubule-bindi 53.9 45 0.00097 37.1 8.0 40 404-443 219-258 (344)
347 PF12709 Kinetocho_Slk19: Cent 53.8 1.7E+02 0.0036 26.3 9.8 28 493-520 45-72 (87)
348 TIGR01005 eps_transp_fam exopo 53.8 1.6E+02 0.0034 36.2 13.5 45 399-443 288-332 (754)
349 PF13238 AAA_18: AAA domain; P 53.8 5.1 0.00011 36.5 0.5 15 129-143 1-15 (129)
350 PRK02119 hypothetical protein; 53.7 81 0.0017 27.1 7.8 43 402-444 5-47 (73)
351 KOG2751 Beclin-like protein [S 53.6 2.2E+02 0.0049 32.5 13.1 46 397-444 155-200 (447)
352 PF14915 CCDC144C: CCDC144C pr 53.5 3.4E+02 0.0073 29.7 16.2 27 494-520 218-244 (305)
353 KOG4572 Predicted DNA-binding 53.3 2.1E+02 0.0045 35.2 13.3 10 677-686 1366-1375(1424)
354 PRK11281 hypothetical protein; 53.3 6.3E+02 0.014 32.8 19.3 13 358-370 63-75 (1113)
355 PLN03025 replication factor C 53.2 7.7 0.00017 42.4 1.8 18 128-145 36-53 (319)
356 TIGR01005 eps_transp_fam exopo 53.2 4.1E+02 0.0089 32.6 16.9 12 499-510 378-389 (754)
357 KOG4603 TBP-1 interacting prot 52.7 2.6E+02 0.0056 28.2 14.5 50 395-444 82-133 (201)
358 PF10498 IFT57: Intra-flagella 52.6 3.8E+02 0.0083 30.1 15.2 25 138-165 57-81 (359)
359 KOG0612 Rho-associated, coiled 52.5 3.4E+02 0.0073 35.1 15.5 21 123-143 85-105 (1317)
360 PF08298 AAA_PrkA: PrkA AAA do 52.4 34 0.00074 38.2 6.6 38 126-163 88-143 (358)
361 PF00769 ERM: Ezrin/radixin/mo 52.4 3.1E+02 0.0068 29.0 15.6 29 404-432 10-38 (246)
362 COG4096 HsdR Type I site-speci 51.9 12 0.00027 45.5 3.4 33 112-145 172-204 (875)
363 KOG0240 Kinesin (SMY1 subfamil 51.9 3.2E+02 0.0069 32.5 14.3 23 498-520 518-540 (607)
364 COG4372 Uncharacterized protei 51.8 4.1E+02 0.0088 30.2 21.2 14 307-320 8-21 (499)
365 PF07798 DUF1640: Protein of u 51.7 2.6E+02 0.0057 27.9 16.1 21 423-443 76-96 (177)
366 KOG0982 Centrosomal protein Nu 51.7 4.3E+02 0.0092 30.4 17.0 19 501-519 371-389 (502)
367 KOG3859 Septins (P-loop GTPase 51.5 2.9E+02 0.0062 30.2 12.9 23 121-143 37-59 (406)
368 TIGR02881 spore_V_K stage V sp 51.4 6.1 0.00013 41.8 0.7 17 127-143 43-59 (261)
369 TIGR00348 hsdR type I site-spe 51.2 8.9 0.00019 46.4 2.1 31 114-145 247-282 (667)
370 PRK11192 ATP-dependent RNA hel 51.0 7.4 0.00016 44.2 1.3 22 120-143 34-55 (434)
371 cd01126 TraG_VirD4 The TraG/Tr 50.9 6.4 0.00014 44.1 0.8 15 129-143 2-16 (384)
372 PF12775 AAA_7: P-loop contain 50.7 10 0.00023 40.6 2.3 29 110-143 22-50 (272)
373 PF04102 SlyX: SlyX; InterPro 50.6 95 0.0021 26.2 7.7 50 398-447 3-52 (69)
374 PRK15422 septal ring assembly 50.5 1.2E+02 0.0026 26.6 8.1 23 397-419 9-31 (79)
375 PF06048 DUF927: Domain of unk 50.5 12 0.00026 40.4 2.7 34 110-144 178-211 (286)
376 KOG0964 Structural maintenance 50.2 4.5E+02 0.0098 33.3 15.7 10 363-372 600-609 (1200)
377 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.9 2.3E+02 0.0051 26.9 17.8 21 494-514 109-129 (132)
378 PRK06569 F0F1 ATP synthase sub 49.8 2.7E+02 0.0059 27.6 14.1 24 421-444 56-79 (155)
379 PF02456 Adeno_IVa2: Adenoviru 49.5 6.2 0.00013 43.1 0.4 16 129-144 90-105 (369)
380 PF14942 Muted: Organelle biog 49.4 2.6E+02 0.0057 27.3 14.4 42 479-520 104-145 (145)
381 PRK04406 hypothetical protein; 49.3 1.2E+02 0.0025 26.4 8.1 42 403-444 8-49 (75)
382 PRK04837 ATP-dependent RNA hel 49.3 8.1 0.00017 43.8 1.3 22 120-143 41-62 (423)
383 PF00063 Myosin_head: Myosin h 49.1 9.5 0.00021 46.3 1.9 21 123-143 82-102 (689)
384 PF15290 Syntaphilin: Golgi-lo 49.0 2.4E+02 0.0053 30.5 11.8 33 416-448 71-103 (305)
385 PF04508 Pox_A_type_inc: Viral 48.9 20 0.00042 24.1 2.5 16 505-520 2-17 (23)
386 PLN03229 acetyl-coenzyme A car 48.8 6.1E+02 0.013 31.3 16.6 125 396-520 459-658 (762)
387 PF13870 DUF4201: Domain of un 48.7 2.8E+02 0.0062 27.5 17.7 23 498-520 153-175 (177)
388 PRK11331 5-methylcytosine-spec 48.6 11 0.00024 43.3 2.3 27 344-374 323-349 (459)
389 smart00502 BBC B-Box C-termina 48.6 2.1E+02 0.0045 25.9 16.1 27 494-520 76-102 (127)
390 KOG1514 Origin recognition com 48.4 19 0.00042 43.2 4.2 23 123-145 419-441 (767)
391 PF15254 CCDC14: Coiled-coil d 48.3 6.2E+02 0.013 31.3 17.6 40 404-443 439-478 (861)
392 PF10146 zf-C4H2: Zinc finger- 48.2 3.6E+02 0.0077 28.5 14.0 15 498-512 89-103 (230)
393 PRK13729 conjugal transfer pil 47.9 61 0.0013 37.5 7.8 40 403-442 80-119 (475)
394 PF07106 TBPIP: Tat binding pr 47.9 1.6E+02 0.0036 29.0 10.2 26 400-425 73-98 (169)
395 KOG0979 Structural maintenance 47.8 4.8E+02 0.01 33.1 15.6 26 665-690 553-578 (1072)
396 KOG2129 Uncharacterized conser 47.6 4.8E+02 0.01 29.8 15.7 29 503-531 291-322 (552)
397 PRK10590 ATP-dependent RNA hel 47.6 9.8 0.00021 43.7 1.6 22 120-143 34-55 (456)
398 COG1219 ClpX ATP-dependent pro 46.9 8.7 0.00019 42.2 1.0 17 126-142 97-113 (408)
399 PF08172 CASP_C: CASP C termin 46.8 72 0.0016 33.9 7.8 86 429-530 1-126 (248)
400 PRK00440 rfc replication facto 46.6 12 0.00026 40.1 2.1 20 124-143 36-55 (319)
401 KOG4807 F-actin binding protei 46.5 1E+02 0.0022 34.6 8.9 20 506-525 387-407 (593)
402 PF05911 DUF869: Plant protein 46.5 4.7E+02 0.01 32.5 15.5 25 420-444 617-641 (769)
403 KOG3130 Uncharacterized conser 46.4 8 0.00017 43.1 0.6 15 653-667 302-316 (514)
404 PF11081 DUF2890: Protein of u 46.4 28 0.00061 35.3 4.4 20 677-696 117-142 (187)
405 KOG0335 ATP-dependent RNA heli 46.2 9.5 0.00021 44.0 1.2 23 122-146 109-131 (482)
406 PF05701 WEMBL: Weak chloropla 46.0 4.2E+02 0.0091 31.3 14.8 15 396-410 176-190 (522)
407 KOG2655 Septin family protein 46.0 53 0.0012 36.8 6.9 21 122-142 17-37 (366)
408 PRK00295 hypothetical protein; 46.0 1.5E+02 0.0031 25.2 8.0 44 401-444 7-50 (68)
409 PF08581 Tup_N: Tup N-terminal 46.0 2.1E+02 0.0045 25.1 11.6 42 403-444 8-49 (79)
410 KOG0964 Structural maintenance 45.9 4.1E+02 0.0089 33.7 14.5 26 132-164 31-56 (1200)
411 COG3074 Uncharacterized protei 45.9 1.3E+02 0.0027 25.8 7.3 11 406-416 18-28 (79)
412 TIGR03017 EpsF chain length de 45.8 3.6E+02 0.0077 30.7 14.0 44 400-443 255-298 (444)
413 PRK04195 replication factor C 45.7 12 0.00025 43.6 1.9 30 114-143 26-56 (482)
414 PRK01156 chromosome segregatio 45.7 7.1E+02 0.015 31.2 18.0 16 128-143 25-40 (895)
415 cd01120 RecA-like_NTPases RecA 45.6 8.3 0.00018 36.3 0.6 16 129-144 2-17 (165)
416 TIGR01618 phage_P_loop phage n 45.5 8.7 0.00019 40.1 0.7 20 126-145 12-31 (220)
417 PF05729 NACHT: NACHT domain 45.2 9.9 0.00022 36.1 1.0 16 128-143 2-17 (166)
418 PF06156 DUF972: Protein of un 45.1 2.2E+02 0.0047 26.4 9.7 21 498-518 37-57 (107)
419 TIGR00635 ruvB Holliday juncti 45.0 10 0.00023 40.7 1.3 17 128-144 32-48 (305)
420 smart00488 DEXDc2 DEAD-like he 44.9 16 0.00035 39.5 2.7 35 103-143 10-44 (289)
421 smart00489 DEXDc3 DEAD-like he 44.9 16 0.00035 39.5 2.7 35 103-143 10-44 (289)
422 KOG3850 Predicted membrane pro 44.8 4.1E+02 0.0089 30.0 13.1 95 394-510 276-378 (455)
423 TIGR02237 recomb_radB DNA repa 44.7 12 0.00027 37.7 1.7 18 126-143 12-29 (209)
424 PF15556 Zwint: ZW10 interacto 44.3 3.8E+02 0.0083 27.7 15.6 46 403-448 74-119 (252)
425 PF09766 FimP: Fms-interacting 44.3 5E+02 0.011 29.1 16.6 40 408-447 14-53 (355)
426 PF06818 Fez1: Fez1; InterPro 44.1 3.8E+02 0.0083 27.7 13.4 34 414-447 11-44 (202)
427 COG1382 GimC Prefoldin, chaper 44.1 2.9E+02 0.0062 26.2 11.8 99 414-520 7-107 (119)
428 KOG0651 26S proteasome regulat 44.1 11 0.00023 41.4 1.1 54 88-142 124-182 (388)
429 KOG0946 ER-Golgi vesicle-tethe 44.1 4.2E+02 0.0091 32.9 14.0 27 496-522 791-817 (970)
430 PRK00771 signal recognition pa 44.0 20 0.00044 41.2 3.5 20 125-144 94-113 (437)
431 PRK10803 tol-pal system protei 44.0 1.4E+02 0.003 32.0 9.5 40 406-445 40-79 (263)
432 TIGR01243 CDC48 AAA family ATP 43.9 14 0.00031 45.1 2.4 51 92-143 174-229 (733)
433 PF10236 DAP3: Mitochondrial r 43.9 16 0.00034 40.0 2.4 23 122-144 19-41 (309)
434 PRK00106 hypothetical protein; 43.8 6.3E+02 0.014 30.1 16.6 8 547-554 260-267 (535)
435 PF06156 DUF972: Protein of un 43.7 1.3E+02 0.0028 27.9 8.0 50 398-447 7-56 (107)
436 TIGR02640 gas_vesic_GvpN gas v 43.6 15 0.00033 39.0 2.2 28 114-143 11-38 (262)
437 PTZ00415 transmission-blocking 43.6 10 0.00022 49.2 0.9 24 617-640 155-178 (2849)
438 TIGR01010 BexC_CtrB_KpsE polys 43.5 5E+02 0.011 28.8 15.2 22 499-520 244-265 (362)
439 KOG0018 Structural maintenance 43.4 2.8E+02 0.0062 35.2 12.9 17 130-146 616-632 (1141)
440 KOG4403 Cell surface glycoprot 43.4 2.5E+02 0.0054 32.1 11.4 92 409-520 234-325 (575)
441 PRK14974 cell division protein 43.2 23 0.0005 39.3 3.6 19 126-144 140-158 (336)
442 KOG4593 Mitotic checkpoint pro 43.2 7E+02 0.015 30.4 16.8 20 498-517 276-295 (716)
443 PRK04325 hypothetical protein; 43.2 1.4E+02 0.003 25.8 7.6 40 404-443 7-46 (74)
444 PRK02119 hypothetical protein; 43.1 1.6E+02 0.0036 25.2 8.0 52 396-447 6-57 (73)
445 PF13863 DUF4200: Domain of un 43.1 2.7E+02 0.006 25.7 16.7 24 494-517 85-108 (126)
446 PRK05703 flhF flagellar biosyn 43.1 10 0.00022 43.4 0.9 19 127-145 222-240 (424)
447 PRK11281 hypothetical protein; 42.7 5.8E+02 0.013 33.2 16.0 23 499-521 194-216 (1113)
448 TIGR00614 recQ_fam ATP-depende 42.3 13 0.00029 42.8 1.7 24 118-143 20-43 (470)
449 PF02534 T4SS-DNA_transf: Type 42.3 18 0.00038 41.6 2.7 24 127-158 45-68 (469)
450 PRK02793 phi X174 lysis protei 42.2 1.5E+02 0.0033 25.3 7.7 40 404-443 6-45 (72)
451 cd02021 GntK Gluconate kinase 42.2 10 0.00022 36.1 0.6 15 129-143 2-16 (150)
452 TIGR03007 pepcterm_ChnLen poly 42.1 6E+02 0.013 29.4 15.4 119 397-524 202-351 (498)
453 PF13555 AAA_29: P-loop contai 42.1 11 0.00024 31.4 0.7 15 129-143 26-40 (62)
454 COG1125 OpuBA ABC-type proline 41.9 11 0.00024 40.4 0.8 12 132-143 33-44 (309)
455 PF13476 AAA_23: AAA domain; P 41.9 11 0.00023 37.2 0.7 18 126-143 19-36 (202)
456 PRK10929 putative mechanosensi 41.8 7.8E+02 0.017 32.0 16.9 20 396-415 177-196 (1109)
457 PRK13341 recombination factor 41.8 13 0.00028 45.4 1.6 21 124-144 50-70 (725)
458 PRK02793 phi X174 lysis protei 41.8 1.6E+02 0.0034 25.3 7.7 51 397-447 6-56 (72)
459 PRK09343 prefoldin subunit bet 41.7 3E+02 0.0066 25.8 11.7 22 499-520 87-108 (121)
460 PF12808 Mto2_bdg: Micro-tubul 41.6 84 0.0018 25.4 5.5 44 403-446 5-48 (52)
461 PF05769 DUF837: Protein of un 41.6 3.9E+02 0.0085 27.1 15.9 21 494-514 157-177 (181)
462 PF13173 AAA_14: AAA domain 41.3 12 0.00025 35.0 0.8 16 128-143 4-19 (128)
463 PRK13169 DNA replication intia 41.3 1.8E+02 0.004 27.1 8.6 49 398-446 7-55 (110)
464 PRK00736 hypothetical protein; 41.2 1.7E+02 0.0036 24.8 7.7 43 401-443 7-49 (68)
465 KOG4809 Rab6 GTPase-interactin 41.1 6.8E+02 0.015 29.7 16.1 24 467-490 383-406 (654)
466 KOG1655 Protein involved in va 41.0 4.2E+02 0.0092 27.3 14.8 43 497-544 126-168 (218)
467 KOG4552 Vitamin-D-receptor int 41.0 3.5E+02 0.0076 28.0 11.1 20 466-485 76-95 (272)
468 PRK04325 hypothetical protein; 41.0 1.7E+02 0.0036 25.3 7.8 51 397-447 7-57 (74)
469 PRK00131 aroK shikimate kinase 41.0 13 0.00027 36.0 1.0 17 127-143 5-21 (175)
470 KOG3091 Nuclear pore complex, 40.8 6.6E+02 0.014 29.4 16.1 50 421-470 377-428 (508)
471 PF14197 Cep57_CLD_2: Centroso 40.8 2.1E+02 0.0046 24.3 8.3 48 397-444 10-57 (69)
472 smart00242 MYSc Myosin. Large 40.7 20 0.00044 43.5 2.9 21 123-143 89-109 (677)
473 TIGR03185 DNA_S_dndD DNA sulfu 40.6 4.6E+02 0.01 31.7 14.4 100 409-520 373-472 (650)
474 PRK00295 hypothetical protein; 40.6 1.6E+02 0.0034 25.0 7.4 43 404-446 3-45 (68)
475 cd01123 Rad51_DMC1_radA Rad51_ 40.6 16 0.00036 37.4 1.9 28 116-143 6-36 (235)
476 PRK06995 flhF flagellar biosyn 40.5 12 0.00025 43.6 0.8 18 127-144 257-274 (484)
477 PHA02653 RNA helicase NPH-II; 40.5 24 0.00053 42.8 3.5 41 94-142 155-195 (675)
478 PRK00080 ruvB Holliday junctio 40.2 11 0.00023 41.4 0.4 18 127-144 52-69 (328)
479 PF14988 DUF4515: Domain of un 40.2 4.4E+02 0.0095 27.2 17.3 19 500-518 159-177 (206)
480 KOG1853 LIS1-interacting prote 40.0 5E+02 0.011 27.8 14.2 21 498-518 165-185 (333)
481 TIGR02788 VirB11 P-type DNA tr 39.9 18 0.00038 39.5 2.1 29 114-143 133-161 (308)
482 PF12329 TMF_DNA_bd: TATA elem 39.8 1.3E+02 0.0029 25.8 7.0 34 400-433 6-39 (74)
483 TIGR02903 spore_lon_C ATP-depe 39.6 16 0.00034 43.9 1.8 43 92-143 150-192 (615)
484 PHA02244 ATPase-like protein 39.5 25 0.00055 39.6 3.2 19 123-143 118-136 (383)
485 PRK04328 hypothetical protein; 39.4 17 0.00037 38.3 1.8 27 116-142 10-39 (249)
486 PF12774 AAA_6: Hydrolytic ATP 39.4 18 0.0004 37.9 2.0 31 111-143 19-49 (231)
487 TIGR00376 DNA helicase, putati 39.3 15 0.00032 44.3 1.5 28 115-143 163-190 (637)
488 PRK06067 flagellar accessory p 39.3 18 0.00038 37.5 1.9 26 116-141 12-40 (234)
489 PRK11634 ATP-dependent RNA hel 39.2 14 0.0003 44.5 1.2 27 115-143 34-60 (629)
490 KOG0742 AAA+-type ATPase [Post 39.1 6.7E+02 0.015 29.0 17.4 136 368-514 80-215 (630)
491 PRK13342 recombination factor 39.0 15 0.00033 41.7 1.4 33 111-143 18-53 (413)
492 PF15294 Leu_zip: Leucine zipp 39.0 5.4E+02 0.012 27.9 14.7 121 392-520 125-245 (278)
493 PRK07261 topology modulation p 39.0 13 0.00029 36.8 0.8 13 129-141 3-15 (171)
494 PRK13729 conjugal transfer pil 39.0 1.5E+02 0.0034 34.3 9.3 62 454-516 62-123 (475)
495 KOG0953 Mitochondrial RNA heli 38.9 14 0.00031 43.1 1.2 13 129-141 194-206 (700)
496 TIGR02030 BchI-ChlI magnesium 38.8 19 0.00041 40.0 2.1 42 93-143 1-42 (337)
497 TIGR01359 UMP_CMP_kin_fam UMP- 38.8 13 0.00029 36.5 0.9 13 129-141 2-14 (183)
498 PF00735 Septin: Septin; Inte 38.7 13 0.00028 40.2 0.8 17 124-140 2-18 (281)
499 PTZ00266 NIMA-related protein 38.6 5.1E+02 0.011 33.3 14.5 97 407-519 429-525 (1021)
500 PF10212 TTKRSYEDQ: Predicted 38.5 7.3E+02 0.016 29.3 14.8 92 412-520 419-510 (518)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-98 Score=869.63 Aligned_cols=666 Identities=29% Similarity=0.335 Sum_probs=491.7
Q ss_pred CCCCCCCCCCCCC--CCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEEeCCCCCCCCCCCCCceEEEcCC
Q 004553 1 MAPTPSSSSKSNQ--ILFKTPQSKHRLNFTSARNTTPNPNSTAKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPD 78 (745)
Q Consensus 1 ~~pt~~~ss~~~~--~~~~~p~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~ 78 (745)
|+|+|.++.++-. ++.++|+.++|+.+.+... ..++..++.++....||+|+|||||++..|....++.+|.+++.
T Consensus 1 ~~~~~~~~r~~~~~~~~~~~p~~~~~~~~~~~~~--s~s~~~~k~~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~ 78 (1041)
T KOG0243|consen 1 MANSPSSSRSSIVQESPCRTPRETQRSNRDSSGP--SNSNTSSKDHKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGI 78 (1041)
T ss_pred CCCCCCCCcccccccccCCCCCcCCCCccCCCCC--CCCCcccCCCCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCC
Confidence 7788765544433 2789999999988866331 23445567778889999999999999999988888889988877
Q ss_pred CCEEEEecC--C--CceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC--------C
Q 004553 79 KQTLRVRAD--F--GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG--------C 146 (745)
Q Consensus 79 ~~~v~~~~~--~--~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G--------~ 146 (745)
+..|.+... . ..+.|+||+| |+|.++|.+||+.+|.|+|..|+.|||||||||||||+||||||.| .
T Consensus 79 ~kEV~v~~~~~sk~~~k~ftFDkV-FGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l 157 (1041)
T KOG0243|consen 79 RKEVAVRQTIASKQIDKTFTFDKV-FGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGEL 157 (1041)
T ss_pred cceEEEecccccccccceeeccee-eCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCC
Confidence 776777665 2 3688999999 8999999999999999999999999999999999999999999999 5
Q ss_pred CCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcccCCCCCCCceEEEEcccccCcce
Q 004553 147 AKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNAT 226 (745)
Q Consensus 147 ~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (745)
+..+|||||++.+||..+...+ ..|+|+|||+|+|||.|+|||++..... ...+++... .+.....|..++|+.
T Consensus 158 ~~~aGIIPRal~~IFd~Le~~~----~EYsvKVSfLELYNEEl~DLLa~~~~~~-~~~~~k~~~-~~~~~kggV~vkGlE 231 (1041)
T KOG0243|consen 158 PSEAGIIPRALRQIFDTLEAQG----AEYSVKVSFLELYNEELTDLLASEDTSD-KKLRIKDDS-TIVDGKGGVIVKGLE 231 (1041)
T ss_pred CccCCcchHHHHHHHHHHHhcC----CeEEEEEEehhhhhHHHHHhcCCccccc-cccccccCC-cccCCcCcEEEecce
Confidence 6789999999999999998764 3799999999999999999999887632 111222211 111334566789999
Q ss_pred EEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeee----ee-------cceeeeeecCCCccccccccchH
Q 004553 227 FISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP----TV-------GGRLMLVDMAGSENIEQAGQTGF 295 (745)
Q Consensus 227 ~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~----~~-------~s~L~fVDLAGSEr~~~t~~~g~ 295 (745)
++.|.++.+++++|++|...|++++|.||..|||||+||+|+|. +. .|+|+||||||||.+.++|+.+.
T Consensus 232 Ei~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~ 311 (1041)
T KOG0243|consen 232 EIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNG 311 (1041)
T ss_pred eeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccc
Confidence 99999999999999999999999999999999999999999983 32 38999999999999999999998
Q ss_pred HHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Q 004553 296 EAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKC 375 (745)
Q Consensus 296 ~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~ 375 (745)
|++ |++.||+||++||+||.||.++..|||||+||||||||||||| +.||+|||||||+..+++||++||.||.|||+
T Consensus 312 RAr-EAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGG-kTKT~iIATiSPa~~~lEETlSTLEYA~RAKn 389 (1041)
T KOG0243|consen 312 RAR-EAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGG-KTKTCIIATISPAKHNLEETLSTLEYAHRAKN 389 (1041)
T ss_pred hhH-HhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCC-CceeEEEEEeCCCcccHHHHHHHHHHHHHhhh
Confidence 777 9999999999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcCCchhHHHhhhHHHHHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 376 IIRGPHTPDKIGAEDSSSAVILGSKISAMDQFIYKLQMEN-------KL--REKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 376 I~~~p~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~L~~e~-------~~--~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
|+|+|.+|.++... .....+..+|..|++.+...+..+ .. .+.+.+....+|++++.++..++.++..+
T Consensus 390 IkNKPevNQkl~K~--~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 390 IKNKPEVNQKLMKK--TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred ccCCCccchHHHHH--HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999775422 112223334444444443332221 12 33456677788888888888888888777
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHhhccc
Q 004553 447 EEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFVEIERR-RMEERILQQ-QQEVEMLRRRLEEIEFELCHSR 524 (745)
Q Consensus 447 e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~e~e~~-~~ee~i~~~-q~e~e~Lr~~l~~Le~eL~~s~ 524 (745)
.+.. ....+.+..+.++...++..|+....++..+.+++.++... +.++.+.+. ..-...+.++...|.+.+..++
T Consensus 468 ~e~~--~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~ 545 (1041)
T KOG0243|consen 468 TELY--MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQ 545 (1041)
T ss_pred HHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 34456677788889999999999999999988888777665 444444433 3344455555666666663332
Q ss_pred CcccccccccCcchhhhhhhcccccCCCCccccccccCCCCccccccccccCCCcccccccccccccccccC--cc----
Q 004553 525 DRDVRSSKDLDGSSFARRLMGIYADEDPGMVKSMDLDMGDVEPFVRDLKHVDRPVHQQDNNEIQGWLQKTSN--EI---- 598 (745)
Q Consensus 525 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 598 (745)
. .-++|..++...+..+|+.++..+++.|...++ ...++ +...+++.....+-+..+... -+
T Consensus 546 ~---------d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~-~~~~~--~~v~~~~s~~~~~l~~~~~~~~s~~s~~~ 613 (1041)
T KOG0243|consen 546 D---------DLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN-LSTLH--GLVASSSSQQISQLTTMLAQMESFLSAKS 613 (1041)
T ss_pred H---------HHHHHHHHhhhhhccccccHHHHHHHhhhhhHH-HHHHH--HHHhhhhhhHHHHHHHHHhhhHHHhhhhc
Confidence 2 346788888899999999999999999999776 44444 233333322222211111111 11
Q ss_pred -cccccccccCCCccccccccccccccccccccCCchhhHHHHhhhhhhhhccCCCCCCCCCcccc---ccccccCCCCC
Q 004553 599 -DEHEVFASKYGDKVCLSTVFEEEEIEDEEDDHKDSAEDEVEKVIIEEKRVCSSGLADGNIPSLNL---TTGLLASSPQK 674 (745)
Q Consensus 599 -~~~~~~~~~~~~~~~~s~~~e~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 674 (745)
.-..+....++++.+++++++..+...+. .+..++-.-.| ..+...+.+|- .-..+..+-+.
T Consensus 614 ~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~-----------~k~~~~s~l~~---i~s~~~~~~~~~~~~l~~~~~~~~~ 679 (1041)
T KOG0243|consen 614 KATEIMKTKISKDRDILSEVLESLQQLQEV-----------LKKDSESCLEV---INSSITSSINELESMLETIANTADD 679 (1041)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHH---HhccchhhHHHHHHHHHHHHHHHHH
Confidence 11235555678999999999986655433 33333322222 11112222221 10011111122
Q ss_pred CCCchhHHhhhHHHHHhhccc--chh--hhcccCCCC
Q 004553 675 PEDTESSRRLRIQNIFTLCGN--NRE--LSQHTRTPT 707 (745)
Q Consensus 675 ~~~~~~~r~~~~~~~~~~~~~--~~~--~~~~~~~~~ 707 (745)
.-+.-++++.-+++||.||+| .|+ +++++.-..
T Consensus 680 ~~~~i~~~l~~q~~~~~l~~~qe~~~~~~~~~~~~~~ 716 (1041)
T KOG0243|consen 680 LLQNISSRLSNQQEILSLFANQELQELVLSQDSAQEL 716 (1041)
T ss_pred HHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 223434444459999999999 566 555543333
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-82 Score=709.37 Aligned_cols=325 Identities=31% Similarity=0.464 Sum_probs=299.0
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-----CceeEEeccccCCCcchHHHHHHHHHHhhhhhc
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGV 121 (745)
Q Consensus 47 ~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-----~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~v 121 (745)
..++|+|++|+||++.++.......++.+.+....+.+..+. ..+.|+||+| |+++++|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~v-f~~~stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAV-FDSDSTQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeee-ecCCCCHHHHHHHHhHHHHHHH
Confidence 367899999999999977778888888898888888887654 3578999999 9999999999999999999999
Q ss_pred ccCcceEEEeeCCCCCCCcccccCC-CCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCC
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMFGC-AKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~G~-~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~ 200 (745)
++||||||||||||||||||||+|. +...|||||+|.+||.+|+...... .|.|+|||+|||||.|+|||++....+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~--~f~vrvS~lEiYnE~i~DLL~~~~~~~ 159 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKT--RFLVRVSYLEIYNESIRDLLSPVNPKG 159 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccc--eEEEEeehHHHHhHHHHHHhCccCcCC
Confidence 9999999999999999999999999 6778999999999999998875433 799999999999999999999987655
Q ss_pred CcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee---------
Q 004553 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------- 271 (745)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--------- 271 (745)
+.+++.+ ..|.++.|++.+.+.+++++..+|..|.++|++++|.||..|||||+||+|+|+.
T Consensus 160 l~lre~p---------~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~ 230 (574)
T KOG4280|consen 160 LELREDP---------KCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLM 230 (574)
T ss_pred ceeeEcC---------CCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCcc
Confidence 6655543 2467889999999999999999999999999999999999999999999999976
Q ss_pred --ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCC-cccCCCCccccccccccCCCCcceE
Q 004553 272 --VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDS-HVPFRDSKLTMLLQDSFEDDKSKIL 348 (745)
Q Consensus 272 --~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~-~VPyRdSKLTrLLqdsLgG~nskt~ 348 (745)
..|+|+|||||||||..++++.|.+++ |+.+||+||++||+||.+|+++.+ ||||||||||+|||||||| ||+|+
T Consensus 231 ~~~~~rlnlvDLagsEr~~~tga~G~rlk-Ea~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGG-N~kT~ 308 (574)
T KOG4280|consen 231 SGRSSKLNLVDLAGSERQSKTGAEGERLK-EATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGG-NSKTT 308 (574)
T ss_pred ccccceeeeeeccchhhhcccCccchhhh-hhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCC-CceEE
Confidence 237999999999999999999999988 999999999999999999999877 9999999999999999986 89999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCC
Q 004553 349 MVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 349 mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
||+||+|+..+++||++|||||+|||.|+|+|.+|..
T Consensus 309 mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined 345 (574)
T KOG4280|consen 309 MIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINED 345 (574)
T ss_pred EEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999999999999999865
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-81 Score=715.55 Aligned_cols=327 Identities=27% Similarity=0.415 Sum_probs=294.8
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEec-CCCceeEEeccccCCCc------chHHHHHHHHHHhhhhh
Q 004553 48 DHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRA-DFGYRDFSLDGVSLSEE------EDLDSFYKKFVESRISG 120 (745)
Q Consensus 48 ~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~-~~~~~~F~FD~V~f~~~------~~Q~~vy~~~v~plV~~ 120 (745)
..+|+|+|||||++..|....+.++|++..+..+|.... +.....|+||+.||+.+ ++|..||+.++.++|+.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 457999999999999888888888888876665555443 23445699999998765 58999999999999999
Q ss_pred cccCcceEEEeeCCCCCCCcccccCCC--CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccC-CCC
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMFGCA--KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLS-SNN 197 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~G~~--~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~-~~~ 197 (745)
+|+|||+||||||||||||||||+|.. .++|||||++++||.++..+. ..++.|.|.|||+|||||+|+|||+ |..
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq-~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQ-SQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcc-cccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 999999999999999999999999988 899999999999999998874 4468999999999999999999999 766
Q ss_pred CCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee------
Q 004553 198 GGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT------ 271 (745)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~------ 271 (745)
+++|++++ .++.|+++.+++.+.|.+..++..+|..|++.|++++|+||.+|||||+||+|...+
T Consensus 162 kg~LRVRE---------HP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~ 232 (1221)
T KOG0245|consen 162 KGGLRVRE---------HPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQD 232 (1221)
T ss_pred CCCceeec---------cCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecccc
Confidence 66666554 235788999999999999999999999999999999999999999999999998854
Q ss_pred ------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC-------CcccCCCCcccccccc
Q 004553 272 ------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-------SHVPFRDSKLTMLLQD 338 (745)
Q Consensus 272 ------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~-------~~VPyRdSKLTrLLqd 338 (745)
..|+|+|||||||||+..+|+.|.|+| ||.+||+||.+||+||.||++.+ .+||||||-||+||++
T Consensus 233 ~~l~sek~SKIsLVDLAGSERasstGa~G~RLK-EGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkE 311 (1221)
T KOG0245|consen 233 TGLDSEKVSKISLVDLAGSERASSTGANGDRLK-EGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKE 311 (1221)
T ss_pred CCCcceeeeeeeEEeccCcccccccCCCccchh-cccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHH
Confidence 348999999999999999999999999 99999999999999999998532 3899999999999999
Q ss_pred ccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q 004553 339 SFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKI 386 (745)
Q Consensus 339 sLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~ 386 (745)
+||| |+||+|||++||++.+|+|||+|||||.|||+|+|++++|+..
T Consensus 312 nLGG-NSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdp 358 (1221)
T KOG0245|consen 312 NLGG-NSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDP 358 (1221)
T ss_pred hcCC-cchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCc
Confidence 9976 8999999999999999999999999999999999999998653
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.2e-76 Score=647.97 Aligned_cols=325 Identities=30% Similarity=0.424 Sum_probs=291.4
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcc
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEK 126 (745)
Q Consensus 47 ~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N 126 (745)
..++|+|+||+||.+..+...+...+..+.+...++.+........|.||.| |.|+++|.+||..++.|+|++||.|||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrV-F~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRV-FSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeee-cCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 5788999999999988777766666666666567777776555589999999 999999999999999999999999999
Q ss_pred eEEEeeCCCCCCCcccccCCCC---CCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcc
Q 004553 127 CTIMMYGPTGSGKSHTMFGCAK---QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGI 203 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G~~~---~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~ 203 (745)
+||||||||||||||||.|... ..|||||++.+||.+|...... .+|.|.|||+|||+|+|+|||++... ++.+
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n--~efhVkVsy~EIYmEKi~DLL~~~k~-nlsv 160 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEEN--LEFHVKVSYFEIYMEKIRDLLDPEKT-NLSV 160 (607)
T ss_pred eeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCccc--ceEEEEEEeehhhhhHHHHHhCcccC-Ccee
Confidence 9999999999999999999876 5599999999999999887543 58999999999999999999997543 4555
Q ss_pred cCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee--------ecce
Q 004553 204 GWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------VGGR 275 (745)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--------~~s~ 275 (745)
++.+ ..+.+++|++...+.+.++++..|+.|..+|.++.|+||.+|||||+||+|+|.+ ..|+
T Consensus 161 heDK---------~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gk 231 (607)
T KOG0240|consen 161 HEDK---------NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGK 231 (607)
T ss_pred eccc---------CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhcccc
Confidence 5443 2345789999999999999999999999999999999999999999999999976 3589
Q ss_pred eeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCC-CCcccCCCCccccccccccCCCCcceEEEEEeC
Q 004553 276 LMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG-DSHVPFRDSKLTMLLQDSFEDDKSKILMVLCAS 354 (745)
Q Consensus 276 L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~is 354 (745)
|.||||||||++.++|+.|.- ..|+.+||+||.+||+||++|+.+ ..|||||||||||||||+||| ||+|.+|+|++
T Consensus 232 LyLVDLaGSEkvsKtga~g~v-leEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGG-NsRTtlIi~cs 309 (607)
T KOG0240|consen 232 LYLVDLAGSEKVSKTGAEGAV-LEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGG-NSRTTLIICCS 309 (607)
T ss_pred EEEEEcccccccCCCCccchh-HHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCC-CcceEEEEecC
Confidence 999999999999999999954 459999999999999999999998 789999999999999999976 89999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCCCCCCCC
Q 004553 355 PDPKEIHKTICTLEYGAKAKCIIRGPHTPDKI 386 (745)
Q Consensus 355 P~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~ 386 (745)
|+..+..||.+||+|+.|||.|+|.+.+|..+
T Consensus 310 Pss~n~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 310 PSSLNEAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred CccccccccccchhhccccccccchhhhhhHh
Confidence 99999999999999999999999998887543
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.3e-76 Score=694.10 Aligned_cols=318 Identities=26% Similarity=0.384 Sum_probs=275.2
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcc
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEK 126 (745)
Q Consensus 47 ~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N 126 (745)
.+.+|+|||||||+...+ .+. .++.. ..+.++.+. .+.|.||+| |+++++|++||+.++.|+|+++|+|||
T Consensus 96 ~ds~VkV~VRVRPl~~~E--~g~-~iV~~-~s~dsl~I~----~qtFtFD~V-Fdp~aTQedVFe~vv~PLV~svLdGyN 166 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGE--EGE-MIVQK-MSNDSLTIN----GQTFTFDSI-ADPESTQEDIFQLVGAPLVENCLAGFN 166 (1320)
T ss_pred CCCCeEEEEEcCCCCCcc--CCC-eeEEE-cCCCeEEEe----CcEEeCCee-eCCCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 367999999999998753 222 23322 334556553 358999999 999999999999999999999999999
Q ss_pred eEEEeeCCCCCCCcccccCCC----------CCCchHHHHHHHHhccccccC---CccceeEEEEEEEEEEecceeeecc
Q 004553 127 CTIMMYGPTGSGKSHTMFGCA----------KQPGIVYKSLKDILGDESDNG---EKIGFSTFVQVTVLEIYNEEIYDLL 193 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G~~----------~~~GIIpral~~LF~~i~~~~---~~~~~~~~V~vS~~EIYnE~I~DLL 193 (745)
+||||||||||||||||+|+. .++|||||++++||..+.... ....+.|.|+|||+|||||+|||||
T Consensus 167 aTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLL 246 (1320)
T PLN03188 167 SSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLL 246 (1320)
T ss_pred ceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecc
Confidence 999999999999999999963 578999999999999886431 2234678999999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee--
Q 004553 194 SSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT-- 271 (745)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~-- 271 (745)
++... .+.++.... .+.++.|++.+.|.+.+++.++|..|..+|++++|.+|..|||||+||+|.|.+
T Consensus 247 sp~~k-~L~IRED~k---------gGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~ 316 (1320)
T PLN03188 247 DPSQK-NLQIREDVK---------SGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRC 316 (1320)
T ss_pred ccccC-CceEEEcCC---------CCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEee
Confidence 87643 344443222 234678999999999999999999999999999999999999999999999853
Q ss_pred ----------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhC-----CCCcccCCCCcccccc
Q 004553 272 ----------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN-----GDSHVPFRDSKLTMLL 336 (745)
Q Consensus 272 ----------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~-----~~~~VPyRdSKLTrLL 336 (745)
..|+|+|||||||||..++++.|.+++ |+++||+||++||+||.+|+. +..|||||+||||+||
T Consensus 317 k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLk-EA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLL 395 (1320)
T PLN03188 317 KSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLL 395 (1320)
T ss_pred cccCCCCcceEEEEEEEEECCCchhccccCcccHHHH-HHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHH
Confidence 247899999999999999999998887 999999999999999999975 3469999999999999
Q ss_pred ccccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCC
Q 004553 337 QDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 337 qdsLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
||+||| ||+|+||+||||+..++.||++||+||+|||.|+|+|.+|..
T Consensus 396 QDSLGG-NSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 396 QESLGG-NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred HHhcCC-CceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 999976 899999999999999999999999999999999999998754
No 6
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-74 Score=645.55 Aligned_cols=327 Identities=29% Similarity=0.423 Sum_probs=295.0
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecC-------CCceeEEeccccCCCc------chHHHHHHHHH
Q 004553 48 DHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD-------FGYRDFSLDGVSLSEE------EDLDSFYKKFV 114 (745)
Q Consensus 48 ~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~-------~~~~~F~FD~V~f~~~------~~Q~~vy~~~v 114 (745)
+.+|||+|||||++..|......+++.++.++.++....+ .+.+.|.||++||+.+ +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5689999999999998888888899999887776665432 4678999999987654 57999999999
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccC
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLS 194 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~ 194 (745)
.-+|+++|+|||+||||||||||||||||+|...+||||||++..||..|.... .....|.|.|||+|||||++||||.
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~-n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKES-NPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhcc-CCCceEEEEEEHHHHhhcchhhhhC
Confidence 999999999999999999999999999999999999999999999999998764 5567899999999999999999999
Q ss_pred CCCCCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee---
Q 004553 195 SNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--- 271 (745)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--- 271 (745)
|.... .........+.|.++.|+..+.+.+++++..++..|.++|+++.|+||..|||||+||.|.|.+
T Consensus 162 Pk~ss--------qtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~ 233 (1714)
T KOG0241|consen 162 PKGSS--------QTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLY 233 (1714)
T ss_pred CCCCc--------ceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEe
Confidence 87541 1112233457899999999999999999999999999999999999999999999999998865
Q ss_pred ---------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCC------CCcccCCCCcccccc
Q 004553 272 ---------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG------DSHVPFRDSKLTMLL 336 (745)
Q Consensus 272 ---------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~------~~~VPyRdSKLTrLL 336 (745)
..++|.|||||||||+.++++.|.+++ |+.+||+||.+||.||.+|++. .++||||||-||+||
T Consensus 234 D~ktg~SgeKvsklslVDLAgserasktga~g~rlk-egsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLL 312 (1714)
T KOG0241|consen 234 DLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLK-EGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLL 312 (1714)
T ss_pred ccccCcchhheeeeeEEEeccccccccccchhhhhh-hcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHH
Confidence 247999999999999999999999988 9999999999999999999853 359999999999999
Q ss_pred ccccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCC
Q 004553 337 QDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 337 qdsLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
||+||| ||+|+||+||||++.+|+||++|||||.|||.|+|...+|.+
T Consensus 313 kD~LGG-NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNed 360 (1714)
T KOG0241|consen 313 KDNLGG-NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED 360 (1714)
T ss_pred HhhcCC-CceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCC
Confidence 999976 899999999999999999999999999999999999988754
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.7e-74 Score=623.53 Aligned_cols=313 Identities=28% Similarity=0.383 Sum_probs=271.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceE
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCT 128 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~t 128 (745)
++|+|+|||||+...|.......++....++ ++.+... ..+.|.||+| |+++++|++||+.++.|+|+.+++|||+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-~~~~~~~-~~~~f~FD~v-f~~~~~q~~vy~~~~~p~v~~~~~G~n~t 77 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD-TLVWHSH-PPRMFTFDHV-ADSNTNQEDVFQSVGKPLVEDCLSGYNGS 77 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCC-cEEeeCC-CCcEEeCCeE-eCCCCCHHHHHHHHHHHHHHHHhCCCcee
Confidence 4799999999998877655566677665544 4444333 2678999999 99999999999999999999999999999
Q ss_pred EEeeCCCCCCCcccccCCC--------CCCchHHHHHHHHhccccccC--CccceeEEEEEEEEEEecceeeeccCCCCC
Q 004553 129 IMMYGPTGSGKSHTMFGCA--------KQPGIVYKSLKDILGDESDNG--EKIGFSTFVQVTVLEIYNEEIYDLLSSNNG 198 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~G~~--------~~~GIIpral~~LF~~i~~~~--~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~ 198 (745)
|||||||||||||||+|+. .++|||||++++||..+.... ......|.|++||+|||||+|||||++...
T Consensus 78 i~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~ 157 (337)
T cd01373 78 IFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR 157 (337)
T ss_pred EEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC
Confidence 9999999999999999976 368999999999999876442 123468899999999999999999987543
Q ss_pred CCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee-------
Q 004553 199 GGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT------- 271 (745)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~------- 271 (745)
.+.+++... .+..+.|++.+.+.+++++.++|..|..+|++++|.+|..|||||+||+|.|..
T Consensus 158 -~l~i~e~~~---------~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~ 227 (337)
T cd01373 158 -NLKIREDIK---------KGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS 227 (337)
T ss_pred -CceEEECCC---------CCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC
Confidence 333333221 234578999999999999999999999999999999999999999999999954
Q ss_pred ---ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhC----CCCcccCCCCccccccccccCCCC
Q 004553 272 ---VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN----GDSHVPFRDSKLTMLLQDSFEDDK 344 (745)
Q Consensus 272 ---~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~----~~~~VPyRdSKLTrLLqdsLgG~n 344 (745)
..|+|+|||||||||..++++.|.+++ |+.+||+||++|++||.+|+. +..|||||+||||+||||+||| |
T Consensus 228 ~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~-E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLgg-n 305 (337)
T cd01373 228 TNIRTSRLNLVDLAGSERQKDDGAEGVRLK-EAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGG-N 305 (337)
T ss_pred CcEEEEEEEEEECCCCCcccccCCccHhhh-hhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCC-C
Confidence 248999999999999999999998877 999999999999999999974 3589999999999999999976 8
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 004553 345 SKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 345 skt~mI~~isP~~~~~~ETlsTLrfa~rak~I 376 (745)
|+|+||+||+|+..+++||++||+||.|||.|
T Consensus 306 s~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 306 AKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999986
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.5e-73 Score=622.01 Aligned_cols=311 Identities=32% Similarity=0.470 Sum_probs=277.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-------------CceeEEeccccCCCcchHHHHHHHHHHh
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-------------GYRDFSLDGVSLSEEEDLDSFYKKFVES 116 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-------------~~~~F~FD~V~f~~~~~Q~~vy~~~v~p 116 (745)
+|+|+|||||+...|...+...++.+..+ .++.+..+. ..+.|.||+| |+++++|++||+.++.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~v-f~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRV-FDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccc-cCCCCCHHHHHHHHHHH
Confidence 58999999999988777778888888655 444443321 2478999999 99999999999999999
Q ss_pred hhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCC
Q 004553 117 RISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSN 196 (745)
Q Consensus 117 lV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~ 196 (745)
+|+.+++|||+||||||||||||||||+|+..++|||||++++||..+.... ....|.|.|||+|||||+|||||++.
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~--~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK--DDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc--cCceEEEEEEEEEEECCEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999988764 24578999999999999999999875
Q ss_pred CCCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee----
Q 004553 197 NGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV---- 272 (745)
Q Consensus 197 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~---- 272 (745)
. ..+.+++... .+..+.|++.+.+.++++++++|+.|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 157 ~-~~l~i~ed~~---------~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~ 226 (338)
T cd01370 157 S-GPLELREDPN---------QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA 226 (338)
T ss_pred C-CCceEEEcCC---------CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC
Confidence 2 2344444332 2345789999999999999999999999999999999999999999999998542
Q ss_pred -------cceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC---CcccCCCCccccccccccCC
Q 004553 273 -------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD---SHVPFRDSKLTMLLQDSFED 342 (745)
Q Consensus 273 -------~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~---~~VPyRdSKLTrLLqdsLgG 342 (745)
.|+|+|||||||||..+++..|.+++ |+.+||+||++|++||.+|+.+. .|||||+||||+||+|+|||
T Consensus 227 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~-E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lgg 305 (338)
T cd01370 227 SINQQVRIGKLSLIDLAGSERASATNNRGQRLK-EGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGG 305 (338)
T ss_pred CCCCcEEEEEEEEEECCCCccccccCCCCcccc-ccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCC
Confidence 37899999999999999999998877 99999999999999999999887 89999999999999999976
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 004553 343 DKSKILMVLCASPDPKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 343 ~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I 376 (745)
||+|+||+||||+..+++||++||+||+|||+|
T Consensus 306 -n~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 306 -NCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred -CCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 899999999999999999999999999999986
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-73 Score=661.94 Aligned_cols=346 Identities=30% Similarity=0.428 Sum_probs=291.8
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC------CceeEEeccccCCCcchHHHHHHHHHHhhhhh
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF------GYRDFSLDGVSLSEEEDLDSFYKKFVESRISG 120 (745)
Q Consensus 47 ~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~------~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~ 120 (745)
....|.|+|||||+...+...+..+.+.+..+ ..+...... ....|.||+| |+++++|++||+.+++|+|.+
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~y~FD~V-F~~~~t~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCIND-TTLFKRVTKSLPEKSKPEKYEFDRV-FGEESTQEDVYERTTKPLLLS 81 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCC-ceeEeeccccccccccccceeeeee-cCCCCCHHHHHHhccHHHHHH
Confidence 45689999999999875433344444444333 333322211 1378999999 999999999999999999999
Q ss_pred cccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCC
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~ 200 (745)
|+.|+||||||||||||||||||.|...+|||||+++.+||..+.... +..|.|.|||+|||||.|||||++... .
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~---~r~f~v~vSYlEIYNE~I~DLL~~~~~-~ 157 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG---EREFSVRVSYLEIYNERIRDLLNPDGG-D 157 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC---CceeEEEEEEEEEeccccccccCCCCC-C
Confidence 999999999999999999999999999999999999999999998875 447999999999999999999998754 2
Q ss_pred CcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeeec-------
Q 004553 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG------- 273 (745)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~------- 273 (745)
+.+++...+ |..+.+++...+.+.+++..+|..|..+|+++.|.+|..|||||+||+|.|....
T Consensus 158 L~irED~~~---------gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~ 228 (675)
T KOG0242|consen 158 LRLREDSEG---------GIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASSRV 228 (675)
T ss_pred ceEeEcCCC---------CEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccchh
Confidence 444443322 4567899999999999999999999999999999999999999999999997644
Q ss_pred ceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCC--CCcccCCCCccccccccccCCCCcceEEEE
Q 004553 274 GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG--DSHVPFRDSKLTMLLQDSFEDDKSKILMVL 351 (745)
Q Consensus 274 s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~--~~~VPyRdSKLTrLLqdsLgG~nskt~mI~ 351 (745)
++|+|||||||||+.+++..|.+++ |+++||+||++||+||.+|+.+ ..||||||||||||||++||| ||+|+|||
T Consensus 229 s~L~lIDLAGSERas~T~~~G~Rlk-EG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgG-n~rt~~I~ 306 (675)
T KOG0242|consen 229 SKLNLIDLAGSERASRTGNEGVRLK-EGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGG-NARTAIIA 306 (675)
T ss_pred heehhhhhhhhhhhhhhhccceecc-ccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCC-CccEEEEE
Confidence 7899999999999999999999998 9999999999999999999987 468999999999999999986 89999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCcCCchhHHHhhhHHHHHHHHHHHH
Q 004553 352 CASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGSKISAMDQFIYKL 411 (745)
Q Consensus 352 ~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~L 411 (745)
||+|+..+|+||.+||+||+|||.|++++.+|..+.. ......+..++..++.++..+
T Consensus 307 tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~--~~~~~~~~~~i~~l~~e~~~~ 364 (675)
T KOG0242|consen 307 TISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSD--KALLKYLQREIAELEAELERL 364 (675)
T ss_pred EeCchhhHHHHHHHHHHHHHHhhhcccccccceecch--hhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988755332 122222334455555555443
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.4e-72 Score=615.67 Aligned_cols=305 Identities=26% Similarity=0.390 Sum_probs=270.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-------------CceeEEeccccCCCcchHHHHHHHHHH
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-------------GYRDFSLDGVSLSEEEDLDSFYKKFVE 115 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-------------~~~~F~FD~V~f~~~~~Q~~vy~~~v~ 115 (745)
++|+|+|||||+...|.......++.+. ++.+|.+..+. ..+.|.||+| |+++++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~v-f~~~~tq~~vy~~~~~ 78 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKV-FGPNTTQKEFFEGTAL 78 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeE-ECCCCCHHHHHHHHHH
Confidence 4799999999999877766677777764 45677776543 2568999999 9999999999999999
Q ss_pred hhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCC
Q 004553 116 SRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSS 195 (745)
Q Consensus 116 plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~ 195 (745)
|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.. |.|.|||+|||||+|||||++
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~--------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG--------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh--------eeEEEEEEEEeCCEeEeCCCC
Confidence 999999999999999999999999999999999999999999999998764 789999999999999999988
Q ss_pred CCCC-----CCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeee
Q 004553 196 NNGG-----GFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVP 270 (745)
Q Consensus 196 ~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~ 270 (745)
.... .+.+++.. ..+..+.|++.+.+.+++++.++|..|.++|.+++|.+|..|||||+||+|++.
T Consensus 151 ~~~~~~~~~~l~i~ed~---------~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~ 221 (345)
T cd01368 151 SPSSTKKRQSLRLREDH---------NGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLV 221 (345)
T ss_pred ccccccCCCceEEEECC---------CCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEE
Confidence 6542 12222111 123457899999999999999999999999999999999999999999999985
Q ss_pred e----------------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhC------CCCcccCC
Q 004553 271 T----------------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN------GDSHVPFR 328 (745)
Q Consensus 271 ~----------------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~------~~~~VPyR 328 (745)
. ..|+|+|||||||||..+++..|.+++ |+..||+||++|++||.+|+. +..|||||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~-E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR 300 (345)
T cd01368 222 QAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYR 300 (345)
T ss_pred EeccCcccccccCCCceEEEEEEEEecccccccccccccchhhh-hhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCc
Confidence 3 237899999999999999999998877 999999999999999999986 46899999
Q ss_pred CCccccccccccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 004553 329 DSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 329 dSKLTrLLqdsLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak 374 (745)
+||||+|||++|+| +|+|+||+||||+..+++||++||+||++|+
T Consensus 301 ~SkLT~lL~~~l~g-~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 301 DSKLTHLFQNYFDG-EGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCHHHHHHHHhcCC-CCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999976 8999999999999999999999999999985
No 11
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.6e-71 Score=609.45 Aligned_cols=322 Identities=33% Similarity=0.465 Sum_probs=289.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC----CceeEEeccccCCCcchHHHHHHHHHHhhhhhcccC
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF----GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLG 124 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~----~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G 124 (745)
.+|+|+|||||+...|...+...++.+..++.+|.+..+. ..+.|.||+| |+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~v-f~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKV-FGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEecccc-CCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999888777888899998888888887653 4678999999 9999999999999999999999999
Q ss_pred cceEEEeeCCCCCCCcccccCCC-----------CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeecc
Q 004553 125 EKCTIMMYGPTGSGKSHTMFGCA-----------KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLL 193 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~G~~-----------~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL 193 (745)
||+||||||||||||||||+|+. ..+|||||++.+||..+... +..|.|.|||+|||||+|||||
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~----~~~~~v~~S~~EIy~e~v~DLL 156 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ----NTEYSVKVSYLELYNEELFDLL 156 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc----cceeEEEEEEEEeeCCeeeeCC
Confidence 99999999999999999999974 34899999999999998765 3478999999999999999999
Q ss_pred CCCC--CCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee
Q 004553 194 SSNN--GGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT 271 (745)
Q Consensus 194 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~ 271 (745)
++.. ...+.+++... ...+..+.|++.+.+.+++++.++|..|.++|.+++|.+|..|||||+||+|.+.+
T Consensus 157 ~~~~~~~~~l~i~e~~~-------~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~ 229 (352)
T cd01364 157 SSESDLNKPLRIFDDTN-------NKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHI 229 (352)
T ss_pred CCccccCccceEEeccC-------cCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEE
Confidence 9875 22343333210 12345678999999999999999999999999999999999999999999999864
Q ss_pred e-----------cceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCcccccccccc
Q 004553 272 V-----------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSF 340 (745)
Q Consensus 272 ~-----------~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsL 340 (745)
. .|+|+||||||||+..+.++.+.+.+ |+..||+||++|++||.+|+.+..|||||+||||+||+++|
T Consensus 230 ~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~-e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~L 308 (352)
T cd01364 230 KETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAR-EAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSL 308 (352)
T ss_pred eccCCCCCccEEEEEEEEEECCCccccccccCcchhhH-HHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhc
Confidence 2 37999999999999999999887766 99999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 004553 341 EDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPD 384 (745)
Q Consensus 341 gG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~~ 384 (745)
|| +|+|+||+||+|+..+++||++||+||++|++|+|.|.+|.
T Consensus 309 gg-~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 309 GG-RTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CC-CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 76 89999999999999999999999999999999999998874
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.4e-71 Score=610.76 Aligned_cols=320 Identities=26% Similarity=0.405 Sum_probs=283.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-------CceeEEeccccCCCc-------chHHHHHHHHH
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-------GYRDFSLDGVSLSEE-------EDLDSFYKKFV 114 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-------~~~~F~FD~V~f~~~-------~~Q~~vy~~~v 114 (745)
++|+|+|||||+...|...++..++.+.+ .++.+..+. ..+.|.||+| |++. ++|++||+.++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~~~~~~~~~f~FD~v-f~~~~~~~~~~~tq~~vf~~~~ 77 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAADATRKKPKSFSFDHS-YWSHDSEDPHYASQEDVFEDLG 77 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCcccccccCceEEECCeE-ecccCCCCCCCCCHHHHHHHHH
Confidence 47999999999998888888888888876 556655543 3578999999 7666 99999999999
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccC
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLS 194 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~ 194 (745)
.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||..+..... ....|.|.|||+|||||+|||||+
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~-~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKE-QNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccc-cCceEEEEEEEEEEECCeeeeCCC
Confidence 9999999999999999999999999999999999999999999999999876543 256889999999999999999999
Q ss_pred CCC--CCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee-
Q 004553 195 SNN--GGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT- 271 (745)
Q Consensus 195 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~- 271 (745)
+.. ...+.+++.. ..+..+.|++.+.+.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+
T Consensus 157 ~~~~~~~~l~i~~~~---------~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~ 227 (356)
T cd01365 157 PKKKNKGNLKVREHP---------VLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQK 227 (356)
T ss_pred CCccCCcCceEEECC---------CCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEE
Confidence 874 2223332221 2345678999999999999999999999999999999999999999999999853
Q ss_pred -----------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCC--------CCcccCCCCcc
Q 004553 272 -----------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG--------DSHVPFRDSKL 332 (745)
Q Consensus 272 -----------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~--------~~~VPyRdSKL 332 (745)
..|+|+|||||||||..+++..|.+++ |+..||+||++|++||.+|+.+ ..|||||+|||
T Consensus 228 ~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~-E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkL 306 (356)
T cd01365 228 KLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLK-EGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVL 306 (356)
T ss_pred ecccCCCCCceEEEEEEeeecccccccccccccchhhH-HHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHH
Confidence 347999999999999999999998877 9999999999999999999864 47999999999
Q ss_pred ccccccccCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q 004553 333 TMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTP 383 (745)
Q Consensus 333 TrLLqdsLgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~~ 383 (745)
|+||+++||| +++|+||+||+|...+++||++||+||.+|++|++.|.+|
T Consensus 307 T~lL~~~lgg-~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 307 TWLLKENLGG-NSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHhcCC-CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999986 8999999999999999999999999999999999999764
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8e-71 Score=599.61 Aligned_cols=313 Identities=32% Similarity=0.465 Sum_probs=283.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-----CceeEEeccccCCCcchHHHHHHHHHHhhhhhccc
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKL 123 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-----~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~ 123 (745)
++|+|+|||||+...+...++..++.+++++.+|.+..+. ..+.|.||+| |+++++|++||+.++.|+|+.+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~v-f~~~~~q~~vy~~~~~plv~~~~~ 79 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAV-YDPNSTQEDVYNETARPLVDSVLE 79 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccc-cCCCccHHHHHHHHHHHHHHHHhC
Confidence 4799999999999888888888899999999999887664 4578999999 999999999999999999999999
Q ss_pred CcceEEEeeCCCCCCCcccccCCCC---CCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCC
Q 004553 124 GEKCTIMMYGPTGSGKSHTMFGCAK---QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm~G~~~---~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~ 200 (745)
|+|+||||||||||||||||+|+.. .+|||||++++||..+..... ..|.|.|||+|||||+|||||++.....
T Consensus 80 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~---~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 156 (333)
T cd01371 80 GYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN---VQFLVRVSYLEIYNEEVRDLLGKDQKKK 156 (333)
T ss_pred CCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC---ccEEEEEEEEEeeCCeeeeCCCCCCCCc
Confidence 9999999999999999999999887 999999999999998876543 4789999999999999999998765433
Q ss_pred CcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee--------
Q 004553 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV-------- 272 (745)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~-------- 272 (745)
+.+++... .+..+.|++.+.+.+++++..+|..|.++|.++.|.+|..|||||+||+|+|...
T Consensus 157 l~i~~~~~---------~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~ 227 (333)
T cd01371 157 LELKERPD---------RGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGEN 227 (333)
T ss_pred eeEEEcCC---------CCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCC
Confidence 44333222 2345789999999999999999999999999999999999999999999999642
Q ss_pred ---cceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCC-cccCCCCccccccccccCCCCcceE
Q 004553 273 ---GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDS-HVPFRDSKLTMLLQDSFEDDKSKIL 348 (745)
Q Consensus 273 ---~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~-~VPyRdSKLTrLLqdsLgG~nskt~ 348 (745)
.|+|+|||||||||..+++..+.+++ |+..||+||.+|++||.+|+.+.. |||||+||||+||+++|+| +|+|+
T Consensus 228 ~~~~s~L~~VDLAGsEr~~~~~~~~~~~~-E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g-~s~t~ 305 (333)
T cd01371 228 HIRVGKLNLVDLAGSERQSKTGATGDRLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGG-NSKTV 305 (333)
T ss_pred cEEEEEEEEEECCCCCcccccCCchhhhH-hHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCC-CceEE
Confidence 37899999999999999998887776 999999999999999999998875 9999999999999999986 79999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 004553 349 MVLCASPDPKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 349 mI~~isP~~~~~~ETlsTLrfa~rak~I 376 (745)
||+||+|...+++||++||+||+|||.|
T Consensus 306 ~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 306 MCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.6e-71 Score=597.56 Aligned_cols=307 Identities=29% Similarity=0.381 Sum_probs=272.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC---------CceeEEeccccCCCcchHHHHHHHHHHhhhh
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF---------GYRDFSLDGVSLSEEEDLDSFYKKFVESRIS 119 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~---------~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~ 119 (745)
.+|+|+|||||+...+...+...++.+.++ .++.+..+. ..+.|.||+| |+++++|++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~v-f~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYV-FDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceE-ECCCCCHHHHHHHHHHHHHH
Confidence 479999999999887776667778888765 567666432 2468999999 99999999999999999999
Q ss_pred hcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCC
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG 199 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~ 199 (745)
.+++|+|+||||||||||||||||+|+..++|||||++++||..+.... ..|.|+|||+|||||+|||||++..
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~----~~~~v~~S~~EIy~e~v~DLL~~~~-- 152 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN----DDLGVTVSFFEIYGGKLFDLLNDRK-- 152 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc----cccEEEEEEEeeecCchhhhccCcc--
Confidence 9999999999999999999999999999999999999999999987653 3689999999999999999998732
Q ss_pred CCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee-----cc
Q 004553 200 GFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV-----GG 274 (745)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~-----~s 274 (745)
.+.+++... .+..+.|++.+.+.+++++.++|..|.++|.++.|.+|..|||||+||+|+|... .|
T Consensus 153 ~l~i~~~~~---------~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s 223 (322)
T cd01367 153 RLSVLEDGK---------GNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLG 223 (322)
T ss_pred ceeEEEcCC---------CCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecCCeeEE
Confidence 343333221 2345789999999999999999999999999999999999999999999999753 47
Q ss_pred eeeeeecCCCcccccccc-chHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCCCcceEEEEEe
Q 004553 275 RLMLVDMAGSENIEQAGQ-TGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCA 353 (745)
Q Consensus 275 ~L~fVDLAGSEr~~~t~~-~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~i 353 (745)
+|+|||||||||....+. .+.+.+ |+..||+||.+|++||.+|+.++.|||||+||||+|||++||| +|+|+||+||
T Consensus 224 ~l~~vDLAGsE~~~~~~~~~~~~~~-e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g-~~~t~~I~~v 301 (322)
T cd01367 224 KLSFIDLAGSERGADTSEHDRQTRK-EGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIG-NSKTVMIATI 301 (322)
T ss_pred EEEEeecCCccccccccccchhhHH-hHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCC-CCeEEEEEEe
Confidence 999999999999988765 454544 9999999999999999999999999999999999999999986 7999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q 004553 354 SPDPKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 354 sP~~~~~~ETlsTLrfa~rak 374 (745)
+|+..+++||++||+||+|+|
T Consensus 302 sp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 302 SPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999986
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.4e-69 Score=591.92 Aligned_cols=312 Identities=30% Similarity=0.443 Sum_probs=280.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceE
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCT 128 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~t 128 (745)
.+|+|+|||||+...+...++..++.+.+.+.++.+.. .+.|.||+| |+++++|++||+.++.|+|+.+++|+|+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---~~~f~FD~v-f~~~~~q~~vy~~~~~plv~~~~~G~n~~ 76 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---DKSFTFDYV-FDPSTSQEEVYNTCVAPLVDGLFEGYNAT 76 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---CcEEecccc-CCCCCCHHHHHHHHHHHHHHHHhCCCccc
Confidence 37999999999998888888888999988887877754 468999999 99999999999999999999999999999
Q ss_pred EEeeCCCCCCCcccccCCC------CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCC--CCC
Q 004553 129 IMMYGPTGSGKSHTMFGCA------KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNN--GGG 200 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~G~~------~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~--~~~ 200 (745)
|||||||||||||||+|+. .++|||||++++||..+..... ...|.|.|||+|||||+|||||++.. ...
T Consensus 77 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~--~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 154 (341)
T cd01372 77 VLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKD--EPDFQLKVSFLELYNEEVRDLLSPSTSEKSP 154 (341)
T ss_pred eeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccc--cceEEEEEEEEEeECCeeecCCCCcccCCCC
Confidence 9999999999999999975 5799999999999999887643 35789999999999999999999875 323
Q ss_pred CcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee---------
Q 004553 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------- 271 (745)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--------- 271 (745)
+.+++... .+..+.|++.+.+.+++++..+|..|.++|..++|.+|..|||||+||+|+|.+
T Consensus 155 l~i~e~~~---------~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~ 225 (341)
T cd01372 155 IQIREDSK---------GNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP 225 (341)
T ss_pred ceEEECCC---------CCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc
Confidence 33333221 234578999999999999999999999999999999999999999999999854
Q ss_pred ---------ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC---CcccCCCCccccccccc
Q 004553 272 ---------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD---SHVPFRDSKLTMLLQDS 339 (745)
Q Consensus 272 ---------~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~---~~VPyRdSKLTrLLqds 339 (745)
..|+|+||||||||+..+++..|.+++ |+..||+||++|++||.+|+.++ .|||||+||||+||+++
T Consensus 226 ~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~-e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLK-EGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred ccccCCCceeeEEEEEEECCCCcccccccCchhHhH-HHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHh
Confidence 237899999999999999999998877 99999999999999999999876 69999999999999999
Q ss_pred cCCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcccc
Q 004553 340 FEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCII 377 (745)
Q Consensus 340 LgG~nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~ 377 (745)
||| +++|+||+||+|...+++||++||+||+|||+|+
T Consensus 305 Lgg-~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 305 LGG-NSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cCC-CceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 976 8999999999999999999999999999999985
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.3e-69 Score=588.50 Aligned_cols=312 Identities=32% Similarity=0.480 Sum_probs=281.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceE
Q 004553 49 HPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCT 128 (745)
Q Consensus 49 ~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~t 128 (745)
++|+|+|||||+...+...+..+++.+.++ .+|.+..+...+.|.||+| |+++++|++||+.++.|+|+.+++|+|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~v-f~~~~~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRV-FPPNTTQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeE-ECCCCCHHHHHHHHHHHHHHHHHcCccce
Confidence 589999999999887766777888888655 7888887777889999999 99999999999999999999999999999
Q ss_pred EEeeCCCCCCCcccccCCCC---CCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcccC
Q 004553 129 IMMYGPTGSGKSHTMFGCAK---QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGW 205 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~G~~~---~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~~~ 205 (745)
|||||+|||||||||+|+.. ++|||||++++||..+..... ...|.|.+||+|||||+|||||++... .+.+++
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~-~l~i~~ 156 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDE--NLEFHVKVSYLEIYMEKIRDLLDVSKD-NLQVHE 156 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccC--CceEEEEEEEEEEECCChhhcccCccC-CceEEE
Confidence 99999999999999999987 899999999999999877632 457899999999999999999987632 233332
Q ss_pred CCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee--------ecceee
Q 004553 206 PKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------VGGRLM 277 (745)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--------~~s~L~ 277 (745)
.. ..+..+.|++++.+.+++++..+|..|.++|++++|.+|..|||||+||+|+|.. ..|+|+
T Consensus 157 ~~---------~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~ 227 (325)
T cd01369 157 DK---------NRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLF 227 (325)
T ss_pred cC---------CCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEE
Confidence 22 1234578999999999999999999999999999999999999999999999964 348999
Q ss_pred eeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC-CcccCCCCccccccccccCCCCcceEEEEEeCCC
Q 004553 278 LVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPD 356 (745)
Q Consensus 278 fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP~ 356 (745)
||||||||+..+.+..|.+++ |+..||+||.+|++||.+|+.++ .|||||+||||+||+++||| +|+|+||+||+|+
T Consensus 228 ~VDLAGsE~~~~~~~~~~~~~-e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g-~s~t~~I~~vsp~ 305 (325)
T cd01369 228 LVDLAGSEKVSKTGAEGQTLE-EAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGG-NSRTTLIICCSPS 305 (325)
T ss_pred EEECCCCCcccccCCcchhHH-HHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCC-CCeEEEEEEeCCc
Confidence 999999999999999997776 99999999999999999999987 89999999999999999986 7999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccc
Q 004553 357 PKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 357 ~~~~~ETlsTLrfa~rak~I 376 (745)
..+++||++||+||+|||+|
T Consensus 306 ~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 306 SYNESETLSTLRFGARAKTI 325 (325)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.3e-69 Score=584.86 Aligned_cols=306 Identities=28% Similarity=0.470 Sum_probs=269.7
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCC-C---CEEEEecCC---CceeEEeccccCCCcchHHHHHHHHHHhhhhhcc
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPD-K---QTLRVRADF---GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVK 122 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~-~---~~v~~~~~~---~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl 122 (745)
+|+|+|||||+...+. +...++.+... . ..+.+..+. ..+.|.||+| |+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~v-f~~~~~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAF-YGTECTQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeE-ECCCCCHHHHHHHHHHHHHHHHh
Confidence 6899999999977552 33455555333 2 467776654 4578999999 99999999999999999999999
Q ss_pred cCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFG 202 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~ 202 (745)
+|||+||||||||||||||||+|+..++|||||++++||..+.... ..|.|.+||+|||||+|||||++... .+.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~----~~~~v~~S~~EIy~e~v~DLL~~~~~-~l~ 152 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA----WTGAFSMSYYEIYNEKVYDLLEPAKK-ELP 152 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc----ccceEEEEEEEEECCEeeEccCCCCC-Cce
Confidence 9999999999999999999999999999999999999999876543 46889999999999999999987532 333
Q ss_pred ccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee------ccee
Q 004553 203 IGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV------GGRL 276 (745)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~------~s~L 276 (745)
+++... .+..+.|++.+.+.+++++..++..|.++|.+++|.+|..|||||+||+|+|.+. .|+|
T Consensus 153 i~~~~~---------~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l 223 (319)
T cd01376 153 IREDKD---------GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKL 223 (319)
T ss_pred EEEcCC---------CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCCceEEEEE
Confidence 333222 2235679999999999999999999999999999999999999999999999764 4799
Q ss_pred eeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCCCcceEEEEEeCCC
Q 004553 277 MLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPD 356 (745)
Q Consensus 277 ~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP~ 356 (745)
+|||||||||..+++..|.+++ |+..||+||.+|++||.+|+.+..|||||+||||+||+++||| +|+|+||+||+|.
T Consensus 224 ~~VDLAGsE~~~~~~~~g~~~~-e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g-~s~t~~i~~vsp~ 301 (319)
T cd01376 224 NLIDLAGSEDNRRTGNEGIRLK-ESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGG-GSRCIMVANIAPE 301 (319)
T ss_pred EEEECCCCCcccccCCccchhh-hhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCC-CccEEEEEEeCCc
Confidence 9999999999999999998877 9999999999999999999999999999999999999999986 7999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 004553 357 PKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 357 ~~~~~ETlsTLrfa~rak 374 (745)
..+++||++||+||+|||
T Consensus 302 ~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 302 RSFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999999999996
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4e-69 Score=583.62 Aligned_cols=308 Identities=30% Similarity=0.446 Sum_probs=274.9
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEE
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTI 129 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tI 129 (745)
+|+|+|||||+...+. .+..+++.+..+ .+|.+..+...+.|.||+| |+++++|++||+.++.|+|++++.|+|+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~v-f~~~~~q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRV-FGGESTNREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeE-ECCCCCHHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999987655 345567777765 6777777667789999999 999999999999999999999999999999
Q ss_pred EeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcccCCCCC
Q 004553 130 MMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWPKGS 209 (745)
Q Consensus 130 faYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~~~~~~~ 209 (745)
||||||||||||||+|+..++|||||++++||..+.... +..|.|.|||+|||||+|||||++... .+.+++...
T Consensus 78 ~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~---~~~~~v~~S~~Eiy~e~v~DLL~~~~~-~l~i~~~~~- 152 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP---DREFLLRVSYLEIYNEKIKDLLSPSPQ-ELRIREDPN- 152 (321)
T ss_pred EeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc---CceEEEEEEEEEEEcCEeEEccCCCCC-CceEEECCC-
Confidence 999999999999999999999999999999999987654 347899999999999999999988752 333333222
Q ss_pred CCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee-----------cceeee
Q 004553 210 GSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV-----------GGRLML 278 (745)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~-----------~s~L~f 278 (745)
.+..+.|++.+.+.+++++..+|..|.++|.+++|.+|..|||||+||+|+|... .|+|+|
T Consensus 153 --------~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~ 224 (321)
T cd01374 153 --------KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNL 224 (321)
T ss_pred --------CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEE
Confidence 2445789999999999999999999999999999999999999999999999653 279999
Q ss_pred eecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC--CcccCCCCccccccccccCCCCcceEEEEEeCCC
Q 004553 279 VDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD--SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPD 356 (745)
Q Consensus 279 VDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~--~~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP~ 356 (745)
||||||||..+.+ .+.+++ |+..||+||++|++||.+|+.++ .|||||+||||+||+++||| +++|+||+||+|.
T Consensus 225 vDLAGsE~~~~~~-~~~~~~-e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g-~s~t~~i~~vsp~ 301 (321)
T cd01374 225 IDLAGSERASQTG-AGERRK-EGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSG-NARTAIICTISPA 301 (321)
T ss_pred EECCCCCccccCC-CCcccc-ccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCC-CceEEEEEEeCCc
Confidence 9999999999998 676766 99999999999999999999985 99999999999999999976 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccc
Q 004553 357 PKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 357 ~~~~~ETlsTLrfa~rak~I 376 (745)
..+++||++||+||+||++|
T Consensus 302 ~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 302 SSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred cccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999976
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.2e-68 Score=579.27 Aligned_cols=306 Identities=28% Similarity=0.450 Sum_probs=266.8
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-----------CceeEEeccccCCCcchHHHHHHHHHHhhh
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----------GYRDFSLDGVSLSEEEDLDSFYKKFVESRI 118 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-----------~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV 118 (745)
+|+|+||+||+... ....+.+.+++.++.+..+. ..+.|.||+| |++ ++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~v-f~~-~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTK-----QGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGV-FHN-ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCC-----CCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcc-cCC-CCHHHHHHHHHHHHH
Confidence 58999999998762 22346677887777776543 2457999999 888 999999999999999
Q ss_pred hhcccCcceEEEeeCCCCCCCcccccCCC---CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCC
Q 004553 119 SGVKLGEKCTIMMYGPTGSGKSHTMFGCA---KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSS 195 (745)
Q Consensus 119 ~~vl~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~ 195 (745)
+.+++|+|+||||||||||||||||+|+. .++|||||++++||..+.... +..|.|++||+|||||+|||||++
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~---~~~~~v~~S~~Eiy~e~v~DLL~~ 150 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA---TKTYTVHVSYLEIYNEQLYDLLGD 150 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc---CcceEEEEEEEEEECCEeecCCCC
Confidence 99999999999999999999999999976 578999999999999987653 347899999999999999999998
Q ss_pred CCCCCCcccCCCCCCCceEEE---EcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee
Q 004553 196 NNGGGFGIGWPKGSGSKVRLE---VMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV 272 (745)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~ 272 (745)
.... ......+.+. ..+..+.|++.+.+.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.
T Consensus 151 ~~~~-------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~ 223 (334)
T cd01375 151 TPEA-------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESR 223 (334)
T ss_pred Cccc-------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEE
Confidence 7421 0001111111 23446789999999999999999999999999999999999999999999999753
Q ss_pred ----------cceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC-CcccCCCCccccccccccC
Q 004553 273 ----------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-SHVPFRDSKLTMLLQDSFE 341 (745)
Q Consensus 273 ----------~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqdsLg 341 (745)
.|+|+|||||||||..+++..+..++ |+..||+||.+|++||.+|+.++ .|||||+||||+||+++||
T Consensus 224 ~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~-e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lg 302 (334)
T cd01375 224 SREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLK-EAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLG 302 (334)
T ss_pred ecCCCCCceEEEEEEEEECCCCCccccccCchhhhh-hhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcC
Confidence 37999999999999999998887766 99999999999999999999988 9999999999999999997
Q ss_pred CCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 004553 342 DDKSKILMVLCASPDPKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 342 G~nskt~mI~~isP~~~~~~ETlsTLrfa~rak 374 (745)
| +|+|+||+||+|+..+++||++||+||+|++
T Consensus 303 g-~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 303 G-NCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred C-CceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 6 8999999999999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.7e-68 Score=574.62 Aligned_cols=316 Identities=32% Similarity=0.475 Sum_probs=281.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCceEEEcCCC-CEEEEecC-CCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCc
Q 004553 48 DHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDK-QTLRVRAD-FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGE 125 (745)
Q Consensus 48 ~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~-~~v~~~~~-~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~ 125 (745)
+++|+|+|||||+...+. ..+.+++.+.++. .+|++..+ ...+.|.||+| |+++++|++||+. +.|+|+.+++|+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~v-f~~~~~q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRV-FDPDASQEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEE-ECCCCCHHHHHHH-HHHHHHHHhCCC
Confidence 468999999999987655 4456677787764 78888776 67789999999 9999999999997 699999999999
Q ss_pred ceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCC--CCCCcc
Q 004553 126 KCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNN--GGGFGI 203 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~--~~~l~~ 203 (745)
|+||||||+|||||||||+|+..++|||||++++||..+..... .+..|.|.+||+|||||+|||||++.. ...+.+
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i 156 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKE-KGWSYTITASMLEIYNETIRDLLATKPAPKKKLEI 156 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhc-cCceEEEEEEEEEEECCEeEECCCCCcCCCCceEE
Confidence 99999999999999999999999999999999999999877643 246889999999999999999999864 223333
Q ss_pred cCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee--------ecce
Q 004553 204 GWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------VGGR 275 (745)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~--------~~s~ 275 (745)
+... ..+..+.|++.+.+.+++++.++|..|.++|.++.|.+|..|||||+||+|+|.. ..|+
T Consensus 157 ~~~~---------~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~ 227 (329)
T cd01366 157 KHDS---------KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGK 227 (329)
T ss_pred EECC---------CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEE
Confidence 3222 1234578999999999999999999999999999999999999999999999964 3479
Q ss_pred eeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCCCcceEEEEEeCC
Q 004553 276 LMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCASP 355 (745)
Q Consensus 276 L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP 355 (745)
|+||||||||+..+.+..+.+++ |+..||+||.+|++||.+|+.+..|||||+||||+||+++||| +++|+||+||||
T Consensus 228 l~~VDLaGsE~~~~~~~~~~~~~-e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g-~~~t~~i~~vsp 305 (329)
T cd01366 228 LNLVDLAGSERLKKSGATGDRLK-EAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 305 (329)
T ss_pred EEEEECCCCcccccccccchhhH-hHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCC-CceEEEEEEeCC
Confidence 99999999999999998887777 9999999999999999999999999999999999999999975 899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccccc
Q 004553 356 DPKEIHKTICTLEYGAKAKCIIR 378 (745)
Q Consensus 356 ~~~~~~ETlsTLrfa~rak~I~~ 378 (745)
...+++||++||+||++|++|++
T Consensus 306 ~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 306 LESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred chhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999976
No 21
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-67 Score=585.13 Aligned_cols=330 Identities=27% Similarity=0.391 Sum_probs=275.7
Q ss_pred CCCCCCCCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecC------------CCceeEEeccccCCCcchHHH
Q 004553 41 AKESAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD------------FGYRDFSLDGVSLSEEEDLDS 108 (745)
Q Consensus 41 ~~~~~~~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~------------~~~~~F~FD~V~f~~~~~Q~~ 108 (745)
...+....++|.|+||+||+... .....|+.|-.+ .+|.+..| .....|.|-+| |+++++|.+
T Consensus 23 ~~~S~~~~d~v~v~~rvrP~~~~---~~~~g~l~v~n~-~tivL~~P~d~~~~~~~n~~q~e~~fsFt~V-F~p~~tQ~d 97 (809)
T KOG0247|consen 23 KGASCESKDPVLVVCRVRPLSDA---SEDEGCLRVINE-ETIVLETPEDSFARRSVNGGQMEKKFSFTKV-FGPSVTQAD 97 (809)
T ss_pred cccchhhhcchheeEeecCCCCC---ccccceEEEecc-ceeEeeCcHHHHhhhccCccceeeEeeeeee-cCCCccHHH
Confidence 44567788999999999998752 222334444433 44544422 12468999999 999999999
Q ss_pred HHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccC--------------------
Q 004553 109 FYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNG-------------------- 168 (745)
Q Consensus 109 vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~-------------------- 168 (745)
||+.++.|+|.+++.|.|+.||+||.|||||||||+|++.++||+||+|+.||..+....
T Consensus 98 vF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 98 VFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996533210
Q ss_pred ------------------------------------C------ccceeEEEEEEEEEEecceeeeccCCCCCCCCcccCC
Q 004553 169 ------------------------------------E------KIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGWP 206 (745)
Q Consensus 169 ------------------------------------~------~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~~~~ 206 (745)
+ ..++.|.|||||+||||+.|||||.+.+..+..-.
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~-- 255 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQK-- 255 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhh--
Confidence 0 13457899999999999999999998765321100
Q ss_pred CCCCCceEE-EEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee----------ecce
Q 004553 207 KGSGSKVRL-EVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT----------VGGR 275 (745)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~----------~~s~ 275 (745)
....+. .....+++|+++|.|.+.++++++|+.|.++|++++|.+|+.|||||+||+|.+-. ..|.
T Consensus 256 ---~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSq 332 (809)
T KOG0247|consen 256 ---LKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQ 332 (809)
T ss_pred ---hhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEe
Confidence 000001 11224689999999999999999999999999999999999999999999998843 3478
Q ss_pred eeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCC-----CCcccCCCCccccccccccCCCCcceEEE
Q 004553 276 LMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG-----DSHVPFRDSKLTMLLQDSFEDDKSKILMV 350 (745)
Q Consensus 276 L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~-----~~~VPyRdSKLTrLLqdsLgG~nskt~mI 350 (745)
|.|||||||||..++++.|.+++ |+++||+||++||+||.+|+.+ +.+|||||||||++++.+|.| ..+++||
T Consensus 333 lsLvDLAGSERt~rtq~sG~RLr-EagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G-~gki~MI 410 (809)
T KOG0247|consen 333 LSLVDLAGSERTNRTQNSGERLR-EAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDG-KGKIRMI 410 (809)
T ss_pred eeeeecccchhcccccchhHHHH-hhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCC-CCcEEEE
Confidence 99999999999999999999888 9999999999999999999864 368999999999999999986 8999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 004553 351 LCASPDPKEIHKTICTLEYGAKAKCIIRGPHT 382 (745)
Q Consensus 351 ~~isP~~~~~~ETlsTLrfa~rak~I~~~p~~ 382 (745)
+||+|.+.+|+|+++.|+||+.|..|...+.+
T Consensus 411 V~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 411 VCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred EecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 99999999999999999999999998765544
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.5e-66 Score=561.56 Aligned_cols=318 Identities=35% Similarity=0.486 Sum_probs=284.9
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCCC-CEEEEecC---CCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCc
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPDK-QTLRVRAD---FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGE 125 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~-~~v~~~~~---~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~ 125 (745)
+|+|+|||||+...+...+..+++.+.+.. .+|++..+ ...+.|.||+| |+++++|++||+.++.|+|+.++.|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~v-f~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKV-FGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEE-ECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 689999999999877777788888886553 47777654 35678999999 99999999999999999999999999
Q ss_pred ceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcccC
Q 004553 126 KCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGIGW 205 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~~~ 205 (745)
|+||||||+|||||||||+|+..++|||||++++||..+..... +..|.|+|||+|||+|+|+|||++... .+.+++
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~--~~~~~v~~S~~ei~~e~v~DLL~~~~~-~l~i~~ 156 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEE--GWQFQVKVSYLEIYNEKIRDLLNPSPK-KLEIRE 156 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhccc--CceEEEEEEEEEEECCEEEECcCCCCC-CcEEEE
Confidence 99999999999999999999999999999999999999876532 457899999999999999999987643 333333
Q ss_pred CCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee----------cce
Q 004553 206 PKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV----------GGR 275 (745)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~----------~s~ 275 (745)
... .+..+.|++.+.+.+++++.++|..+.++|.+++|.+|..|||||+||+|+|.+. .|+
T Consensus 157 ~~~---------~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~ 227 (335)
T smart00129 157 DKK---------GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASK 227 (335)
T ss_pred CCC---------CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEE
Confidence 221 2346789999999999999999999999999999999999999999999999843 589
Q ss_pred eeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhC--CCCcccCCCCccccccccccCCCCcceEEEEEe
Q 004553 276 LMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN--GDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCA 353 (745)
Q Consensus 276 L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~--~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~i 353 (745)
|+||||||+|+..+.+..+.+++ |+..||+||.+|++||.+|+. +..|||||+|+||+||+++|+| +++++||+||
T Consensus 228 l~~VDLaGse~~~~~~~~~~~~~-e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g-~~~~~~i~~v 305 (335)
T smart00129 228 LNLVDLAGSERASKTGAEGDRLK-EAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGG-NSKTLMIANI 305 (335)
T ss_pred EEEEECCCCCccccccChhHHHH-hhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCC-CCeEEEEEEc
Confidence 99999999999999998887777 999999999999999999998 4679999999999999999976 7999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 004553 354 SPDPKEIHKTICTLEYGAKAKCIIRGPHT 382 (745)
Q Consensus 354 sP~~~~~~ETlsTLrfa~rak~I~~~p~~ 382 (745)
+|...+++||++||+||+++++|++.|.+
T Consensus 306 sp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 306 SPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred CCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999999999999975
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.3e-67 Score=607.06 Aligned_cols=320 Identities=31% Similarity=0.441 Sum_probs=278.0
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-----CceeEEeccccCCCcchHHHHHHHHHHhhhhhc
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGV 121 (745)
Q Consensus 47 ~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-----~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~v 121 (745)
-.++|+|||||||+...+.......++..... ..+.+..+. ..+.|.||+| |+|.++|++||.. +.|+|..+
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~fdkV-f~p~~sQ~~VF~e-~~~lv~S~ 388 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDKGDKLEPQSFKFDKV-FGPLASQDDVFEE-VSPLVQSA 388 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCc-ceeEeecCCCCCCCccccceeeee-cCCcccHHHHHHH-HHHHHHHH
Confidence 47899999999999875544433333333322 345554433 2235999999 9999999999997 89999999
Q ss_pred ccCcceEEEeeCCCCCCCcccccC-CCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCC-CC
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMFG-CAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNN-GG 199 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~G-~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~-~~ 199 (745)
|+|||+||||||||||||||||.| .+.++|||||++..||..+..... +|.|.+.+||+|||||.|+|||.+.. ..
T Consensus 389 lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~--g~~y~~~~s~~EIYNe~i~DlL~~~~~~~ 466 (670)
T KOG0239|consen 389 LDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS--GWKYDKTVSMLEIYNEAIRDLLSDESYVG 466 (670)
T ss_pred hcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc--CceEEeeeehhHHHHHHHHHhcccccccc
Confidence 999999999999999999999999 689999999999999999988754 77999999999999999999998874 32
Q ss_pred CCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee--------
Q 004553 200 GFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT-------- 271 (745)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~-------- 271 (745)
.+.|+....+ ...+.+++.+.+.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|..
T Consensus 467 k~~I~~~~~~---------~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~ 537 (670)
T KOG0239|consen 467 KLEIVDDAEG---------NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIR 537 (670)
T ss_pred ceeEEEcCCC---------ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccc
Confidence 3333322211 13568899999999999999999999999999999999999999999999953
Q ss_pred ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCCCcceEEEE
Q 004553 272 VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVL 351 (745)
Q Consensus 272 ~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~ 351 (745)
..+.|+|||||||||+.+++.+|.+++ |+.+||+||.+||.||.||+....|||||+||||+|||++||| ++||+|++
T Consensus 538 ~~g~l~LVDLAGSER~~~s~~tG~Rlk-E~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG-~sKTLmfv 615 (670)
T KOG0239|consen 538 VTGVLNLVDLAGSERVSKSGVTGERLK-EAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGG-DSKTLMFV 615 (670)
T ss_pred cccceeEeecccCcccCcCCCchhhhH-HHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCC-ccceeeEE
Confidence 458999999999999999999999998 9999999999999999999999999999999999999999985 89999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 004553 352 CASPDPKEIHKTICTLEYGAKAKCIIRGPHT 382 (745)
Q Consensus 352 ~isP~~~~~~ETlsTLrfa~rak~I~~~p~~ 382 (745)
+|||...++.||+++|+||.|++.+...+..
T Consensus 616 ~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 616 NISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred EeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999998876654
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.2e-64 Score=546.50 Aligned_cols=310 Identities=35% Similarity=0.506 Sum_probs=273.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC-----CceeEEeccccCCCcchHHHHHHHHHHhhhhhcccC
Q 004553 50 PIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----GYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLG 124 (745)
Q Consensus 50 ~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~-----~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G 124 (745)
+|+|+|||||+...+ ......++.+.++ .+|.+..+. ..+.|.||+| |+++++|++||+.++.|+|+.++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~v-f~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHV-FDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeE-EcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999987654 3355677888765 567776653 3689999999 9999999999999999999999999
Q ss_pred cceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCC-CCCCcc
Q 004553 125 EKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNN-GGGFGI 203 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~-~~~l~~ 203 (745)
+|+||||||+|||||||||+|+..++|||||++++||..+..... ....|.|.+||+|||+|+|+|||++.. ...+.+
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~-~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKE-KNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccc-cCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 999999999999999999999999999999999999999876642 234789999999999999999999862 122333
Q ss_pred cCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee----------c
Q 004553 204 GWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV----------G 273 (745)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~----------~ 273 (745)
+.... .+..+.|++.+.+.+++++..+|..+.++|..+.|.+|..|||||+||+|+|... .
T Consensus 157 ~~~~~---------~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~ 227 (328)
T cd00106 157 REDPK---------GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKS 227 (328)
T ss_pred EEcCC---------CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEE
Confidence 22211 3456789999999999999999999999999999999999999999999999542 4
Q ss_pred ceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCC--CcccCCCCccccccccccCCCCcceEEEE
Q 004553 274 GRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD--SHVPFRDSKLTMLLQDSFEDDKSKILMVL 351 (745)
Q Consensus 274 s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~--~~VPyRdSKLTrLLqdsLgG~nskt~mI~ 351 (745)
|+|+||||||+|+..+.+..+.+.. |+..||+||.+|++||.+|+.+. .|||||+||||+||+++|+| +++|+||+
T Consensus 228 s~l~~VDLaGse~~~~~~~~~~~~~-e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g-~~~t~~I~ 305 (328)
T cd00106 228 SKLNLVDLAGSERAKKTGAEGDRLK-EAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGG-NSKTLMIA 305 (328)
T ss_pred EEEEEEECCCCCcccccCCchhhhH-hHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCC-CCeEEEEE
Confidence 7999999999999999888886666 99999999999999999999988 99999999999999999986 89999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Q 004553 352 CASPDPKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 352 ~isP~~~~~~ETlsTLrfa~rak 374 (745)
||+|...+++||++||+||+|||
T Consensus 306 ~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 306 NISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.5e-64 Score=550.72 Aligned_cols=308 Identities=35% Similarity=0.578 Sum_probs=262.2
Q ss_pred EeCCCCCCCCCCCCCceEEEcCCCCEEE-----EecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEE
Q 004553 56 RIRNFPNPNPKEKPSSVLQVNPDKQTLR-----VRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIM 130 (745)
Q Consensus 56 RIRP~~~~e~~~~~~~~v~i~~~~~~v~-----~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIf 130 (745)
||||+...+...+...++.+........ .......+.|.||+| |+++++|++||+.++.|+|+++|+|+|+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~v-f~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRV-FDEDATQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEE-EETTSTHHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeE-ECCCCCHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 8999988777666666655542111111 112234678999999 9999999999999999999999999999999
Q ss_pred eeCCCCCCCcccccCC--CCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCC---CCCcccC
Q 004553 131 MYGPTGSGKSHTMFGC--AKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNG---GGFGIGW 205 (745)
Q Consensus 131 aYGqTGSGKTyTm~G~--~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~---~~l~~~~ 205 (745)
|||+|||||||||+|+ ..++|||||++++||..+..........|.|+|||+|||||+|||||++... ..+.+
T Consensus 80 ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i-- 157 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKI-- 157 (335)
T ss_dssp EEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEE--
T ss_pred eeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccce--
Confidence 9999999999999999 8999999999999999998765433457899999999999999999998741 11222
Q ss_pred CCCCCCceEEEEc-c-cccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee------------
Q 004553 206 PKGSGSKVRLEVM-G-KKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT------------ 271 (745)
Q Consensus 206 ~~~~~~~~~~~~~-~-~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~------------ 271 (745)
+.... | ..+.++..+.+.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+
T Consensus 158 --------~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~ 229 (335)
T PF00225_consen 158 --------REDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESV 229 (335)
T ss_dssp --------EEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEE
T ss_pred --------eeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccce
Confidence 11111 2 4678999999999999999999999999999999999999999999999854
Q ss_pred ecceeeeeecCCCccccccccc-hHHHHHHHhhhccchHHHHHHHHHHhCC--CCcccCCCCccccccccccCCCCcceE
Q 004553 272 VGGRLMLVDMAGSENIEQAGQT-GFEAKMQTAKINQGNIALKRVVESIANG--DSHVPFRDSKLTMLLQDSFEDDKSKIL 348 (745)
Q Consensus 272 ~~s~L~fVDLAGSEr~~~t~~~-g~~~k~E~~~IN~SL~aLg~vI~aL~~~--~~~VPyRdSKLTrLLqdsLgG~nskt~ 348 (745)
..|+|+||||||+|+..+.+.. +.+.+ |+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+||| +|+|+
T Consensus 230 ~~s~l~~vDLaGsE~~~~~~~~~~~~~~-e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g-~s~t~ 307 (335)
T PF00225_consen 230 KHSRLTFVDLAGSERLKKSGASDGQRLK-ESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGG-NSKTI 307 (335)
T ss_dssp EEEEEEEEEEEESTGGCGCSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSS-SSEEE
T ss_pred eecceeeeeccccccccccccccccccc-ccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccc-cccce
Confidence 3479999999999999998875 44444 9999999999999999999999 899999999999999999986 89999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 004553 349 MVLCASPDPKEIHKTICTLEYGAKAKCI 376 (745)
Q Consensus 349 mI~~isP~~~~~~ETlsTLrfa~rak~I 376 (745)
||+||+|...+++||++||+||++||+|
T Consensus 308 ~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 308 LIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred eEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999986
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-63 Score=539.77 Aligned_cols=321 Identities=26% Similarity=0.343 Sum_probs=276.7
Q ss_pred CCCCCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC---------CceeEEeccccCCCcchHHHHHHHHH
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF---------GYRDFSLDGVSLSEEEDLDSFYKKFV 114 (745)
Q Consensus 44 ~~~~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~---------~~~~F~FD~V~f~~~~~Q~~vy~~~v 114 (745)
.....+.|.|.||-||++.+|......++|.|. .+..+.++.+. ....|.||++ |++.++++.||..++
T Consensus 203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvp-s~~~l~vHEpk~kVDLtkYlEn~~F~FDya-FDe~~sNe~VYrfTa 280 (676)
T KOG0246|consen 203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVP-SKNVLVVHEPKLKVDLTKYLENQKFRFDYA-FDESASNELVYRFTA 280 (676)
T ss_pred CCCccceEEEEeecCCCCchhccccccceEecc-ccceEEeeccccccchHHHHhhceEEEeee-cccccchHHHHHHhh
Confidence 356788999999999999988777777777773 34455555543 3468999999 999999999999999
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccccCCC------CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecce
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA------KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEE 188 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~------~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~ 188 (745)
+|+|..+|+|.-+|+||||||||||||||.|.- -..||..++.+++|..+....= ....+.|++||+|||+.+
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y-~~~~l~v~~tFFEIYgGK 359 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTY-RKLDLKVYVTFFEIYGGK 359 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccch-hhcceEEEEEEEEEeCcc
Confidence 999999999999999999999999999998864 2459999999999998865311 124678999999999999
Q ss_pred eeeccCCCCCCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEe
Q 004553 189 IYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILD 268 (745)
Q Consensus 189 I~DLL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~ 268 (745)
|||||+.... +.+.+.... . ..+-|+..-.+...++++.+|+.|...|+.+.|..|..|||||+||+|.
T Consensus 360 vfDLL~~k~K--LrvLEDg~Q----Q-----VqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIi 428 (676)
T KOG0246|consen 360 VYDLLNDKKK--LRVLEDGNQ----Q-----VQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQII 428 (676)
T ss_pred hhhhhccccc--eEEeecCCc----e-----EEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeee
Confidence 9999987432 322221111 1 1345788889999999999999999999999999999999999999999
Q ss_pred eee-----ecceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccccccCCC
Q 004553 269 VPT-----VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDD 343 (745)
Q Consensus 269 v~~-----~~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~ 343 (745)
+.. ..|++.||||||+||...+...+...+.|++.||+||+||..||.+|..++.|+|||.||||++|+|||-|-
T Consensus 429 lr~~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGe 508 (676)
T KOG0246|consen 429 LRKHGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGE 508 (676)
T ss_pred eecCCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCC
Confidence 965 458999999999999998887777777799999999999999999999999999999999999999999987
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q 004553 344 KSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIR 378 (745)
Q Consensus 344 nskt~mI~~isP~~~~~~ETlsTLrfa~rak~I~~ 378 (745)
|++|+||+||||.....+.||+|||||+|+|.+..
T Consensus 509 nSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv 543 (676)
T KOG0246|consen 509 NSRTCMIATISPGISSCEHTLNTLRYADRVKELSV 543 (676)
T ss_pred CCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999998754
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-62 Score=562.50 Aligned_cols=333 Identities=28% Similarity=0.404 Sum_probs=287.1
Q ss_pred eCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCC
Q 004553 57 IRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTG 136 (745)
Q Consensus 57 IRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTG 136 (745)
|||+...+...+...|+.+.|...+|.+..+ ..|+||+| |.....|.++|+.+|.|+++.+|.|||+|++||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~---~s~t~d~v-~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtg 76 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKD---ASFTYDKV-FLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTG 76 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCC---cceeeeee-ccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccC
Confidence 6999888888999999998899888888554 57999999 8999999999999999999999999999999999999
Q ss_pred CCCcccccCCC----CCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCC-CCcccCCCCCCC
Q 004553 137 SGKSHTMFGCA----KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGG-GFGIGWPKGSGS 211 (745)
Q Consensus 137 SGKTyTm~G~~----~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~-~l~~~~~~~~~~ 211 (745)
|||||||.+.. ...|+|||++.++|..+..... +.|.|.|||+|||++.|+|||.|.... .+.++++++
T Consensus 77 sgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~---~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g--- 150 (913)
T KOG0244|consen 77 SGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES---FVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPKG--- 150 (913)
T ss_pred CCceeecccccccccccCCcCcchHHHHHHHHHhhhc---cceeeeeeeeeccchhhhhhcChhhhhhceeccccCC---
Confidence 99999999872 3459999999999999987643 578999999999999999999854321 122222111
Q ss_pred ceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeee---------ecceeeeeecC
Q 004553 212 KVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT---------VGGRLMLVDMA 282 (745)
Q Consensus 212 ~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~---------~~s~L~fVDLA 282 (745)
+..+.+++...+.+..++...|..|.-.|++++|+||..|||||+||++.+++ ..++|+|||||
T Consensus 151 -------~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLA 223 (913)
T KOG0244|consen 151 -------EITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLA 223 (913)
T ss_pred -------ceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecc
Confidence 13456777778888889999999999999999999999999999999998854 23799999999
Q ss_pred CCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCC--cccCCCCccccccccccCCCCcceEEEEEeCCCCCCH
Q 004553 283 GSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDS--HVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEI 360 (745)
Q Consensus 283 GSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~--~VPyRdSKLTrLLqdsLgG~nskt~mI~~isP~~~~~ 360 (745)
||||.+++++.|.+++ |+.+||.+|++||+||.+|..... |||||+||||||||++||| |+.|+||+||||+..+.
T Consensus 224 GSER~kkT~a~gdrlK-EgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgG-ns~tlmiaCiSpadsn~ 301 (913)
T KOG0244|consen 224 GSERVKKTKAEGDRLK-EGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGG-NSDTLMIACISPADSNA 301 (913)
T ss_pred ccccccccccchhhhh-hccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcC-CcceeeeeecChhhhhh
Confidence 9999999999999999 999999999999999999987665 9999999999999999986 89999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCCcCCchhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004553 361 HKTICTLEYGAKAKCIIRGPHTPDKIGAEDSSSAVILGSKISAMDQFIYKLQMENKLR 418 (745)
Q Consensus 361 ~ETlsTLrfa~rak~I~~~p~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~L~~e~~~~ 418 (745)
+||++||+||.||++|+|+|.+|.. ....++..|+.+|+.|+.++-..
T Consensus 302 ~EtlnTl~ya~Rak~iknk~vvN~d----------~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 302 QETLNTLRYADRAKQIKNKPVVNQD----------PKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred hhHHHHHHHhhHHHHhccccccccc----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999752 12234556666676666665443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-55 Score=508.66 Aligned_cols=318 Identities=31% Similarity=0.449 Sum_probs=270.7
Q ss_pred CCCCCCCeEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCCCceeEEeccccCCCcchHHHHHHHHHHhhhhhccc
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKL 123 (745)
Q Consensus 44 ~~~~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~ 123 (745)
......++++++++.|-..++ . +....+...+.+ .......|.||+| |++.++|+.||+.++.|+++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~-~~~~~~~~~fdkv-f~~~~~q~~v~e~~~~~l~~~~l~ 87 (568)
T COG5059 17 NEKSVSDIKSTIRIIPGELGE------R-LINTSKKSHVSL-EKSKEGTYAFDKV-FGPSATQEDVYEETIKPLIDSLLL 87 (568)
T ss_pred ceeeecCceEEEeecCCCcch------h-eeeccccccccc-ccccceEEEEeec-cCCCCcHHHHHHHhhhhHHHHHHh
Confidence 345567789999999854422 1 111111112211 1112567999999 999999999999999999999999
Q ss_pred CcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCCCCCCCcc
Q 004553 124 GEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFGI 203 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~~ 203 (745)
||||||||||||||||||||.|....+||||+++..||..+..... ...|.|.|||+|||||+++|||.+.... +.+
T Consensus 88 g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~--~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~ 164 (568)
T COG5059 88 GYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM--TKDFAVSISYLEIYNEKIYDLLSPNEES-LNI 164 (568)
T ss_pred cccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc--CcceeeEeehhHHHhhHHHhhccCcccc-ccc
Confidence 9999999999999999999999999999999999999999887653 3367899999999999999999887642 112
Q ss_pred cCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeee--------cce
Q 004553 204 GWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV--------GGR 275 (745)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~--------~s~ 275 (745)
+... ..+..+.+++...+.+.++++.+|+.|..+|+++.|.+|..|||||+||++.+... .++
T Consensus 165 ~~~~---------~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~ 235 (568)
T COG5059 165 REDS---------LLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSK 235 (568)
T ss_pred cccC---------CCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecce
Confidence 1111 12335567899999999999999999999999999999999999999999999542 368
Q ss_pred eeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhC--CCCcccCCCCccccccccccCCCCcceEEEEEe
Q 004553 276 LMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN--GDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCA 353 (745)
Q Consensus 276 L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~--~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~i 353 (745)
|+||||||||++..++..+.+++ |+..||+||.+||+||.+|.. +..|||||+||||||||++||| +|+|+|||||
T Consensus 236 l~lvDLagSE~~~~~~~~~~r~~-E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG-~~~~~~i~~I 313 (568)
T COG5059 236 LSLVDLAGSERAARTGNRGTRLK-EGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGG-NCNTRVICTI 313 (568)
T ss_pred EEEEeeccccccchhhcccchhh-hhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCC-CccEEEEEEE
Confidence 99999999999999988888888 999999999999999999997 7889999999999999999986 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 004553 354 SPDPKEIHKTICTLEYGAKAKCIIRGPHTPD 384 (745)
Q Consensus 354 sP~~~~~~ETlsTLrfa~rak~I~~~p~~~~ 384 (745)
+|...++++|.+||+||.||+.|++.+..+.
T Consensus 314 sp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 314 SPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred cCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999988774
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=7.2e-47 Score=379.19 Aligned_cols=168 Identities=39% Similarity=0.572 Sum_probs=158.2
Q ss_pred HHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecce
Q 004553 109 FYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEE 188 (745)
Q Consensus 109 vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~ 188 (745)
||+.++ |+|+.+++|+|+||||||||||||||||+|+..++|||||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 899989 99999999999999999999999999999999999999999987
Q ss_pred eeeccCCCCCCCCcccCCCCCCCceEEEEcccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEe
Q 004553 189 IYDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILD 268 (745)
Q Consensus 189 I~DLL~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~ 268 (745)
++.++..|.++|.++.|.+|..|||||+||+|+
T Consensus 58 -----------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~ 90 (186)
T cd01363 58 -----------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIH 90 (186)
T ss_pred -----------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEE
Confidence 566788888999999999999999999999999
Q ss_pred eeee-----------cceeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHhCCCCcccCCCCccccccc
Q 004553 269 VPTV-----------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQ 337 (745)
Q Consensus 269 v~~~-----------~s~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLq 337 (745)
+... .++|+||||||||+..+++..+.+.+ |+..||+||++|++||.+|+.++.|||||+||||+|||
T Consensus 91 v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~-e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~ 169 (186)
T cd01363 91 FGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLT-ETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQ 169 (186)
T ss_pred EEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHH-HHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Confidence 8542 37999999999999999999887766 99999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEeCC
Q 004553 338 DSFEDDKSKILMVLCASP 355 (745)
Q Consensus 338 dsLgG~nskt~mI~~isP 355 (745)
|+|+| ||+|+||+||||
T Consensus 170 ~~L~g-~~~t~~i~~vsP 186 (186)
T cd01363 170 DSLGG-NSRTLMVACISP 186 (186)
T ss_pred HhcCC-CCeEEEEEEeCc
Confidence 99986 899999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=96.97 E-value=4.3e-06 Score=97.86 Aligned_cols=252 Identities=18% Similarity=0.142 Sum_probs=135.3
Q ss_pred CCCCCCeEEEEEeCCCCCCCCCCCCCceEEEcCC----CCEEEEe----cCCCceeEEeccccCCCcchHHHHHHHHHHh
Q 004553 45 APQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPD----KQTLRVR----ADFGYRDFSLDGVSLSEEEDLDSFYKKFVES 116 (745)
Q Consensus 45 ~~~~~~VkV~vRIRP~~~~e~~~~~~~~v~i~~~----~~~v~~~----~~~~~~~F~FD~V~f~~~~~Q~~vy~~~v~p 116 (745)
-++..++.|+|+|+|...... .....+.+... ..++... .+.....|.||.+ +........++.. ..-
T Consensus 301 LgG~~~~~~i~~Isp~~~~~~--et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~-~~~ 376 (568)
T COG5059 301 LGGNCNTRVICTISPSSNSFE--ETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLS-EDRSEIEILVFRE-QSQ 376 (568)
T ss_pred cCCCccEEEEEEEcCCCCchH--HHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhh-hhhhhhhhHHHHH-HHh
Confidence 445669999999999764211 11111111000 0111111 1112346888888 5555554444443 344
Q ss_pred hhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecceeeeccCCC
Q 004553 117 RISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSN 196 (745)
Q Consensus 117 lV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~ 196 (745)
+++.-+.| +++||++++|+++||.- ...++..-.+...|......... .+.+...+-+.++|-....+++...
T Consensus 377 ~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~e~ 449 (568)
T COG5059 377 LSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEE-GWKYKSTLQFLRIEIDRLLLLREEE 449 (568)
T ss_pred hhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555556 89999999999999953 33345555556777665544211 1122222334444422222222211
Q ss_pred CCCCCcccCCCCCCCceEEEEc-ccccCcceEEecccHHHHHHHHHHHHhccccccccCcCCCCCcceeEEEeeeeec--
Q 004553 197 NGGGFGIGWPKGSGSKVRLEVM-GKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTVG-- 273 (745)
Q Consensus 197 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~-- 273 (745)
... ........... .......+...-.. ... .........+..+.+..|..++++|++|+.+.....
T Consensus 450 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 519 (568)
T COG5059 450 LSK--------KKTKIHKLNKLRHDLSSLLSSIPEET-SDR-VESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS 519 (568)
T ss_pred cCC--------hHHHHHHHHHHHHHHHHhhhhcchhh-hhh-hhhhhhccchhhcccchhhhhcccchhhhhcccchhhh
Confidence 110 00000000000 00000000000000 001 111134567888999999999999999987764321
Q ss_pred -c--eeeeeecCCCccccccccchHHHHHHHhhhccchHHHHHHHHHHh
Q 004553 274 -G--RLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIA 319 (745)
Q Consensus 274 -s--~L~fVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~ 319 (745)
+ .++.|||||+||. -....|..++ +..++|++|..++.++.++.
T Consensus 520 ~~~~~~n~~~~~~~e~~-~s~~~~~~l~-~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 520 TKELSLNQVDLAGSERK-VSQSVGELLR-ETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hHHHHhhhhhccccccc-hhhhhHHHHH-hhHhhhhccccchhhhhhcc
Confidence 1 2699999999999 7777776666 89999999999999988763
No 31
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.95 E-value=0.73 Score=44.75 Aligned_cols=122 Identities=21% Similarity=0.330 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH-HHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQ-EINVKVTERTQILKHQLEKKL 477 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~-e~~~k~~e~~~~l~~ele~~~ 477 (745)
.....++..+..+..++.....++..+...+..++.++..+..+|............. .-+..+..+++.|..+|+...
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666666665544432111111 111245666777777776666
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 478 EECQRMAEEFVEIER--RRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 478 ee~~~~~e~~~e~e~--~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..+....+.+.+... ..+++++..++.+...+..+++.|...+
T Consensus 94 ~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 94 KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 655555554433322 2567888888888888888888888776
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.019 Score=65.47 Aligned_cols=91 Identities=23% Similarity=0.367 Sum_probs=53.8
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccCCC---CCCchHH----HHHHHHhccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA---KQPGIVY----KSLKDILGDE 164 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GIIp----ral~~LF~~i 164 (745)
.|....- |.|..+|-.- +..+|+++-.|...-+ -.|.|||||||||---- ..|-||- -...+||+..
T Consensus 4 ~F~l~s~-f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 4 PFKLHSP-FKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred ceEeccC-CCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 4555555 7777777644 5667777666655433 36999999999996411 2222220 1233445444
Q ss_pred cccCCccceeEEEEEEEEEEecceee
Q 004553 165 SDNGEKIGFSTFVQVTVLEIYNEEIY 190 (745)
Q Consensus 165 ~~~~~~~~~~~~V~vS~~EIYnE~I~ 190 (745)
...-....++|+ ||||.-|.-.-|
T Consensus 78 k~fFP~NaVEYF--VSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYF--VSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEE--eeeccccCcccc
Confidence 433233345555 899999976643
No 33
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.94 E-value=3.8 Score=43.14 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKG 450 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~ 450 (745)
.++..+..+...+...+.+..+++.+..+++.++..++.++...+.+.
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555566666666666555555443
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.34 E-value=2.2 Score=51.70 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDK 428 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~ 428 (745)
+..|+..+++|+.++...+...+++..+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4456666666666665554444444444
No 35
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2.4 Score=50.59 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccccCcchhhhhhh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFELCHSRDRDVRSSKDLDGSSFARRLM 544 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~~~~~l~~~~~~~~~~ 544 (745)
......+++.|++.|..++++|...|+.-+....+.+..++.......++
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHH
Confidence 34566788999999999999999999888888888888777755554443
No 36
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.94 E-value=0.025 Score=58.65 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=29.5
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|+||..+.++ .+...|. .+..+.+.--..+|. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g~--~N~~a~~-~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVGE--SNELAYA-AAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--TT--TTHHHHH-HHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcCC--cHHHHHH-HHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 69999863332 3444443 344455542223444 78899999999997644
No 37
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.81 E-value=7.4 Score=39.80 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
....+..++.++..|..+|.+.+++|
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455666666677777776666553
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.77 E-value=3.7 Score=49.84 Aligned_cols=34 Identities=38% Similarity=0.597 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 487 FVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 487 ~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+..+.....+++...+|.+++.+++++++|+-.|
T Consensus 315 maTldKEmAEERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 315 MATLDKEMAEERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678899999999999999999998876
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.55 E-value=8.1 Score=36.47 Aligned_cols=49 Identities=31% Similarity=0.318 Sum_probs=30.8
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 393 SAVILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRA 441 (745)
Q Consensus 393 ~~~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~ 441 (745)
....+.+.|..++.++..++.++.....+++.+..+|.++..++..++.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666667677776666666666666666666555555443
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.23 E-value=6.6 Score=41.35 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLR 440 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr 440 (745)
..++.++...+..++.+.+..+.+....+..|++..+.+..++
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443333
No 41
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.77 E-value=0.077 Score=57.13 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.1
Q ss_pred HHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 113 FVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 113 ~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
.+.+++..+++--++.|+..|+||||||.||-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 34566777778889999999999999999973
No 42
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.69 E-value=12 Score=41.30 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
..|...+..|+.+.....+..+.+...+.++.+....|+.++..++
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555545555544445554444333
No 43
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.53 E-value=5.3 Score=47.75 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 004553 505 EVEMLRRRLEEIEFEL 520 (745)
Q Consensus 505 e~e~Lr~~l~~Le~eL 520 (745)
.|..|+.++.+|+...
T Consensus 161 QN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 161 QNRELKEQLAELQDAF 176 (617)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456666666666644
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.44 E-value=19 Score=37.06 Aligned_cols=53 Identities=26% Similarity=0.246 Sum_probs=30.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
.|..+|..|+...............+...+..-|.+++.++..|+.++...+.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444444455555555566666667777777777665554
No 45
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.21 E-value=8.6 Score=40.71 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=36.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
.+...|+....+++.++..+.........+..+|.+...|+++++++|+.++.
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666667777777888888888888887765543
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.78 E-value=16 Score=44.75 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 409 YKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFV 488 (745)
Q Consensus 409 ~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~ 488 (745)
+.|...++.++.++.++...+....+++.+++-++.+.+.+.. ...+....+.+.++.+++++.
T Consensus 951 egL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLs----------------s~~k~~~h~v~~~~ek~ee~~ 1014 (1243)
T KOG0971|consen 951 EGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLS----------------SAAKDADHRVEKVQEKLEETQ 1014 (1243)
T ss_pred hhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh----------------hhhhhHhHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777776665555432 222233344444444444443
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 489 EIER---RRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 489 e~e~---~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
...+ +..++-|..+|.++..|...-.+|+..|
T Consensus 1015 a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1015 ALLRKKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3222 2456677778888888888888887776
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=90.63 E-value=0.18 Score=52.46 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=29.8
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.++||.. +... +...+ ..+...+-.++|..++-||++|+||||-+.+
T Consensus 12 ~~~fd~f-~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNF-YADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred ccccccc-ccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 5789987 4333 22111 2222223346777889999999999998754
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.07 E-value=15 Score=44.75 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004553 498 RILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..+.|...+..|+.+-..||..|
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555556666666666665
No 49
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.78 E-value=16 Score=37.14 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~ 518 (745)
.+...|..+|.++..+....+.+.+
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 3344444444444444444444443
No 50
>PRK11637 AmiB activator; Provisional
Probab=89.59 E-value=18 Score=41.27 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=8.6
Q ss_pred HHHhhcccchhhhcc
Q 004553 688 NIFTLCGNNRELSQH 702 (745)
Q Consensus 688 ~~~~~~~~~~~~~~~ 702 (745)
+.||++|+...+.-+
T Consensus 370 g~~t~Y~~~~~~~v~ 384 (428)
T PRK11637 370 GDMSLYGYNQSALVS 384 (428)
T ss_pred CcEEEccCCCcCCCC
Confidence 467777765555433
No 51
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.51 E-value=0.14 Score=58.70 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.1
Q ss_pred hhcccCcceEEEeeCCCCCCCcccccC
Q 004553 119 SGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 119 ~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..++..-+|.|+.-|+||||||.||+.
T Consensus 251 ~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 251 LRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 345566799999999999999999976
No 52
>PRK09039 hypothetical protein; Validated
Probab=89.33 E-value=16 Score=40.64 Aligned_cols=17 Identities=18% Similarity=0.084 Sum_probs=10.8
Q ss_pred EEeCCCCCCHHHHHHHHHHH
Q 004553 351 LCASPDPKEIHKTICTLEYG 370 (745)
Q Consensus 351 ~~isP~~~~~~ETlsTLrfa 370 (745)
+.++|. |-+.++||-..
T Consensus 13 ~~~wpg---~vd~~~~ll~~ 29 (343)
T PRK09039 13 VDYWPG---FVDALSTLLLV 29 (343)
T ss_pred CCCCch---HHHHHHHHHHH
Confidence 356774 66677777654
No 53
>PRK06620 hypothetical protein; Validated
Probab=89.26 E-value=0.23 Score=51.24 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=30.6
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcc---eEEEeeCCCCCCCccccc
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEK---CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N---~tIfaYGqTGSGKTyTm~ 144 (745)
..|+||..+.++ ++...|..+. .+.+. . |+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~--~N~~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSS--SNDQAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecc--cHHHHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 368899864333 3444555433 33331 1 333 358899999999999985
No 54
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.22 E-value=0.23 Score=58.85 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=34.3
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..|+||..++++. ....| ..+..+++..-.++|. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s--N~~A~-aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS--NRFAH-AAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc--cHHHH-HHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4689998755443 33334 3445555554456776 78899999999998854
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=8.2 Score=45.31 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=15.7
Q ss_pred chHHHHHHHHhccccccCCccceeEEEEEEEEE
Q 004553 151 GIVYKSLKDILGDESDNGEKIGFSTFVQVTVLE 183 (745)
Q Consensus 151 GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~E 183 (745)
|.|.+....|=..+...+ .+|...|.=+|..
T Consensus 164 ~av~~~~reIee~L~~ag--ldyDl~vr~~~gG 194 (652)
T COG2433 164 GAVKRVVREIEEKLDEAG--LDYDLEVRESYGG 194 (652)
T ss_pred HHHHHHHHHHHHHHHhcC--CCceeEEeeccCc
Confidence 666666666665555432 2333344444433
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.88 E-value=8.3 Score=45.15 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccccccc
Q 004553 503 QQEVEMLRRRLEEIEFELCHSRDRDVRSSKD 533 (745)
Q Consensus 503 q~e~e~Lr~~l~~Le~eL~~s~~~~~~~~~~ 533 (745)
+.+++.|+.++..++..+..++...+-+.++
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333333333
No 57
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.71 E-value=12 Score=42.51 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004553 501 QQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 501 ~~q~e~e~Lr~~l~~Le 517 (745)
+.+..++.|++++.+|-
T Consensus 432 s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 33334444444444443
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.68 E-value=5.9 Score=46.45 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004553 498 RILQQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le 517 (745)
.+.+....++.|++++.+++
T Consensus 489 ~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 489 ELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555
No 59
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.45 E-value=14 Score=40.40 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 423 NEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 423 ~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
+.++..+..+++|...|+.+|+.+..
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444455555555555555554433
No 60
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.36 E-value=17 Score=37.38 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
|..|+.+|..++.......+...++..+..++.+-+..++.+...+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555555544444455555555555555555555544444433
No 61
>PRK12377 putative replication protein; Provisional
Probab=88.36 E-value=0.31 Score=51.58 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
...+||.. ......|..++. .+..++..+..+. ..|+-||++|+||||.+.+
T Consensus 69 ~~~tFdnf-~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 69 RKCSFANY-QVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred ccCCcCCc-ccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34577775 333345555554 3555666665544 4577799999999999865
No 62
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.21 E-value=24 Score=33.59 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~ 518 (745)
.|+.+-..++.++..++.++++|..
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777765
No 63
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.19 E-value=9.2 Score=44.98 Aligned_cols=114 Identities=26% Similarity=0.321 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 416 KLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVK--VTERTQILKHQLEKKLEECQRMAEEFVEIERR 493 (745)
Q Consensus 416 ~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k--~~e~~~~l~~ele~~~ee~~~~~e~~~e~e~~ 493 (745)
.+.-.++..++..+..++.++..|+.++...+.......-..+... +....+....+|-..++..+ ..+.+ ++.
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~---~S~~~-e~e 313 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLE---ASLVE-ERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 3444455666777777888888888887755544322211111110 00112222222222222222 11111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccccc
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFELCHSRDRDVRSSKDL 534 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~~~~~l 534 (745)
.|..+|..++.++..+...|++++..| .+++.=...++.|
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL-~~~sDYeeIK~EL 353 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKL-NSRSDYEEIKKEL 353 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccHHHHHHHH
Confidence 678899999999999999999999887 3333333344433
No 64
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.10 E-value=0.5 Score=57.78 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=22.9
Q ss_pred HHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 111 KKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 111 ~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
..++.+++.+ .|-+.+||-||++|+|||.|+
T Consensus 768 asfL~paIkg--sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 768 HGFLESGIKQ--SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHhc--CCCCceEEEECCCCCCHHHHH
Confidence 3445665553 355667889999999999986
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.04 E-value=8.7 Score=39.64 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++.+++..++.+++.|+.+++.+++.+
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777766654
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.41 E-value=46 Score=36.63 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
..|...+..|+.+.....+..+.+..-+..+.+....|+.++.
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~ 189 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR 189 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444444444444444444444443
No 67
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.38 E-value=22 Score=37.91 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLK 431 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~ 431 (745)
.+|..|+..+.+|+.+...++-.++-++..|++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqK 50 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQK 50 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355666666666655555444444444444443
No 68
>PRK08116 hypothetical protein; Validated
Probab=87.35 E-value=0.3 Score=52.20 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=34.6
Q ss_pred ceeEEeccccCCCcchHHHHHHHHHHhhhhhccc--CcceEEEeeCCCCCCCcccccC
Q 004553 90 YRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKL--GEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 90 ~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~--G~N~tIfaYGqTGSGKTyTm~G 145 (745)
++.++||.. . .+..+...|. .+...++++.. ..+..++-||.+|+||||.+..
T Consensus 79 ~~~~tFdnf-~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 79 FRNSTFENF-L-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred HHhcchhcc-c-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 456888875 2 3445554554 35555555432 3455688999999999998754
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.21 E-value=31 Score=42.19 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=9.0
Q ss_pred CCCeEEEEEeCCCCC
Q 004553 48 DHPIEVVGRIRNFPN 62 (745)
Q Consensus 48 ~~~VkV~vRIRP~~~ 62 (745)
.+...+.||.-|...
T Consensus 124 ~g~~~i~Crt~~v~~ 138 (717)
T PF10168_consen 124 DGKKEINCRTVPVDE 138 (717)
T ss_pred CCCcceeEEEEEech
Confidence 445566777766543
No 70
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.16 E-value=11 Score=45.91 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+..++..++..++.++.+++..+..+
T Consensus 644 ~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 644 MKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444
No 71
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.93 E-value=25 Score=44.91 Aligned_cols=14 Identities=50% Similarity=0.828 Sum_probs=11.5
Q ss_pred EeeCCCCCCCcccc
Q 004553 130 MMYGPTGSGKSHTM 143 (745)
Q Consensus 130 faYGqTGSGKTyTm 143 (745)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999999865
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.92 E-value=46 Score=39.16 Aligned_cols=7 Identities=29% Similarity=0.942 Sum_probs=3.6
Q ss_pred HHhhccc
Q 004553 689 IFTLCGN 695 (745)
Q Consensus 689 ~~~~~~~ 695 (745)
-+.||-+
T Consensus 502 ~~~l~~~ 508 (546)
T PF07888_consen 502 HYSLCEQ 508 (546)
T ss_pred CcCcccC
Confidence 3556644
No 73
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.86 E-value=25 Score=44.83 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.2
Q ss_pred eecCCCccc
Q 004553 279 VDMAGSENI 287 (745)
Q Consensus 279 VDLAGSEr~ 287 (745)
=++||....
T Consensus 160 ~~~~g~~~~ 168 (1164)
T TIGR02169 160 DEIAGVAEF 168 (1164)
T ss_pred HHHhCHHHH
Confidence 345554443
No 74
>PRK09039 hypothetical protein; Validated
Probab=86.84 E-value=44 Score=37.19 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQM 413 (745)
Q Consensus 400 ~i~~l~~~i~~L~~ 413 (745)
++..++.++..|+.
T Consensus 47 ~i~~~~~eL~~L~~ 60 (343)
T PRK09039 47 EISGKDSALDRLNS 60 (343)
T ss_pred HHhhHHHHHHHHHH
Confidence 33333333333333
No 75
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.83 E-value=0.43 Score=54.70 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=32.1
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..|+||..+.+ ..+...|.. +..++++- ..+|. +|-||++|+||||-+..
T Consensus 100 ~~~tFdnFv~g--~~n~~a~~~-~~~~~~~~-~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG--PGNSFAYHA-ALEVAKNP-GRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC--CchHHHHHH-HHHHHhCc-CCCCe-EEEEcCCCCcHHHHHHH
Confidence 46899987433 344445554 33334331 22665 88999999999998753
No 76
>PRK11637 AmiB activator; Provisional
Probab=86.81 E-value=43 Score=38.25 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 405 DQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 405 ~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
...|..++.++.....++..++.++..++.++.+++.++
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444444333
No 77
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.72 E-value=0.54 Score=49.69 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=32.5
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
...+||.. ......|..++.. +...++++..|. ..++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf-~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENY-RVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccc-cCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 45678875 2233445445544 444555554443 3678899999999998754
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.41 E-value=28 Score=41.57 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=26.7
Q ss_pred cccccccCcchhhhhhhcccccCCCCccccccccCCCCccccccccccCCCcccccccccccccc
Q 004553 528 VRSSKDLDGSSFARRLMGIYADEDPGMVKSMDLDMGDVEPFVRDLKHVDRPVHQQDNNEIQGWLQ 592 (745)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (745)
.+..+++..+.|-.|.. .+|++|.--..|-.....|.| .-|++-|..+++..
T Consensus 478 e~~~k~~~Rs~Yt~RIl--------EIv~NI~KQk~eI~KIl~DTr-----~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 478 EKLPKDVNRSAYTRRIL--------EIVKNIRKQKEEIEKILSDTR-----ELQKEINSLTGKLD 529 (594)
T ss_pred HhCCCCCCHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 44555566666666655 345565554455555455544 22444444444443
No 79
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.33 E-value=16 Score=40.21 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 004553 497 ERILQQQQEVEMLRRRLEEIEFELCHSRD 525 (745)
Q Consensus 497 e~i~~~q~e~e~Lr~~l~~Le~eL~~s~~ 525 (745)
.++.+.+++.+.+..++......|.+.+.
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777777777644433
No 80
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.17 E-value=6.2 Score=35.70 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 466 TQILKHQLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 466 ~~~l~~ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
+..|+..|+..+........++...+...+..+...++.++..|+.+++
T Consensus 51 L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 51 LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555554444444333344455556666677777776654
No 81
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.05 E-value=25 Score=44.08 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.0
Q ss_pred EeeCCCCCCCccccc
Q 004553 130 MMYGPTGSGKSHTMF 144 (745)
Q Consensus 130 faYGqTGSGKTyTm~ 144 (745)
|.-|+.||||+-.|.
T Consensus 66 fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILT 80 (1074)
T ss_pred EeecCCCCcHHHHHH
Confidence 778999999998774
No 82
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.88 E-value=23 Score=44.49 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 466 TQILKHQLEKKLEECQRMAEEFVEIERR--RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 466 ~~~l~~ele~~~ee~~~~~e~~~e~e~~--~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.|+.+-++-+...+.+++.+.+++.. +.++.++..+.++..|..+++.+-+-+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444455555555555555433 233444555555555555555444433
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.87 E-value=37 Score=35.64 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
|..++..+.............+......+...+.++..|..+++.++
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE 49 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444
No 84
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.70 E-value=0.53 Score=45.73 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhhhhcccC-cceEEEeeCCCCCCCcccccC
Q 004553 105 DLDSFYKKFVESRISGVKLG-EKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 105 ~Q~~vy~~~v~plV~~vl~G-~N~tIfaYGqTGSGKTyTm~G 145 (745)
-|.++...+... +-.+ ....++..++||||||++|..
T Consensus 7 ~Q~~ai~~i~~~----~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 7 YQQEAIARIINS----LENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHHHH----HHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHHHH----HHhcCCCCCEEEEECCCCCcChhhhh
Confidence 355554444433 3222 345566678999999999975
No 85
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.60 E-value=0.53 Score=53.99 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=31.3
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..|+||..+.++ .+...|.. +..+.++--..+| .++-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~g~--~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVGK--SNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccCC--CcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 468899853433 33334433 4444443222345 477799999999999754
No 86
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.51 E-value=39 Score=38.50 Aligned_cols=22 Identities=5% Similarity=0.197 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004553 499 ILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.+...+..+..+|.+|+..|
T Consensus 423 ~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 423 EEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555554
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.22 E-value=0.64 Score=52.50 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=30.3
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
..|+||..+.+ ..+...|. .+..+...--..+| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~g--~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVVG--KSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCcccccccC--CcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 46899985333 33333443 34444444212244 46779999999999874
No 88
>PRK05642 DNA replication initiation factor; Validated
Probab=85.17 E-value=0.72 Score=48.22 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=15.9
Q ss_pred eEEEeeCCCCCCCcccccC
Q 004553 127 CTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G 145 (745)
..++-||++|+||||-+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4578899999999998743
No 89
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.13 E-value=24 Score=37.22 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcccCccccccccc
Q 004553 494 RMEERILQQQQEVEMLR-----RRLEEIEFELCHSRDRDVRSSKDL 534 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr-----~~l~~Le~eL~~s~~~~~~~~~~l 534 (745)
++.-+..-+++||+.|- -+|.+|+-+|+.-++-+..++++.
T Consensus 214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq 259 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ 259 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH
Confidence 34456677788888874 467889999976666554444443
No 90
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.94 E-value=49 Score=33.87 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=54.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREK-------ER-------NEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVK 461 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~-------e~-------~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k 461 (745)
.+...+.++...+..+..|+..... .+ .++-..|....+++..|+.+|....... ..+..+
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~-----r~~~~k 90 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE-----RELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3556666666666666666654332 12 2222334455666666666665443321 111111
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 462 VTERTQILKHQLE---KKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 462 ~~e~~~~l~~ele---~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+ .....++. ..+..++++.++..-.++.++..++..++..++.-..++..|++.+
T Consensus 91 l----k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 91 L----KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222 2222222332222222344555666666666666666666666655
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.85 E-value=45 Score=33.41 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEAHDKLLKKEE 434 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~e 434 (745)
++...++.+..++.++........+....+..++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 92
>PRK09087 hypothetical protein; Validated
Probab=84.68 E-value=0.53 Score=49.08 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=28.3
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
.|+||.. +.... +..+|.. +.....-.+..++-||++||||||-+.
T Consensus 17 ~~~~~~F-i~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDL-LVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhce-eecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 5788886 33222 3335553 222221134558899999999999885
No 93
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.41 E-value=59 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=17.2
Q ss_pred HhhhHHHHHhhcccchhhhcccCCCCC
Q 004553 682 RRLRIQNIFTLCGNNRELSQHTRTPTV 708 (745)
Q Consensus 682 r~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (745)
+..=..-||.|+=|=-.|+..-|++++
T Consensus 254 ~~~f~~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 254 RQRFEYAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344455677777777777775555554
No 94
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=84.25 E-value=36 Score=45.77 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=14.5
Q ss_pred cCcceEEEeeCCCCCCCcc
Q 004553 123 LGEKCTIMMYGPTGSGKSH 141 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTy 141 (745)
++-|-+|+..|-+|+|||-
T Consensus 165 ~renQSiLiTGESGAGKTe 183 (1930)
T KOG0161|consen 165 DRENQSILITGESGAGKTE 183 (1930)
T ss_pred cCCCceEeeecCCCCCcch
Confidence 4677788888888888874
No 95
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.14 E-value=43 Score=32.55 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQL 445 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~ 445 (745)
..+|..|+..+...+........+.......+..++.++..+...++.
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~ 70 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQ 70 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333333444444444444444444433
No 96
>PRK06526 transposase; Provisional
Probab=84.09 E-value=0.57 Score=49.77 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=27.4
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|.|+.. +...+..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 72 ~fd~~~~---~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 72 EFDFDHQ---RSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hccCccC---CCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 4445432 333444444433334343 3444 78899999999999875
No 97
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.00 E-value=34 Score=44.41 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=16.8
Q ss_pred cccccCCCCCCchHHHHHHHHhcc
Q 004553 140 SHTMFGCAKQPGIVYKSLKDILGD 163 (745)
Q Consensus 140 TyTm~G~~~~~GIIpral~~LF~~ 163 (745)
-|.|.++...-.-||+++..+++.
T Consensus 170 ~fSL~~s~~~~~hI~kli~~vln~ 193 (1201)
T PF12128_consen 170 RFSLCESSHQYQHIEKLINAVLNK 193 (1201)
T ss_pred hcCcCCCcccccChHHHHHHHHhc
Confidence 577777666666778887777654
No 98
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.91 E-value=65 Score=34.45 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+...|.....+++.|+.+|..|++++
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.64 E-value=20 Score=42.13 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAH 426 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~ 426 (745)
...++.|+.++..|+.++.....++..+.
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33444444444455555444444444433
No 100
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.28 E-value=13 Score=37.90 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRL 513 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l 513 (745)
.+++++..++.|+..|-.+.
T Consensus 162 ~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444
No 101
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.24 E-value=46 Score=32.24 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 004553 499 ILQQQQEVEMLRRRL 513 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l 513 (745)
+...+.|++.|+.++
T Consensus 135 ~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 135 LRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344445555444
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.72 E-value=0.86 Score=52.43 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=30.8
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|+||..+.++ .+...|. .+..++..--..+| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~--~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS--SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC--cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999874333 3344553 34444443211245 478899999999998743
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=82.70 E-value=0.83 Score=41.85 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=15.3
Q ss_pred cceEEEeeCCCCCCCcccc
Q 004553 125 EKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm 143 (745)
....++.+|++|+|||+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999765
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.48 E-value=37 Score=41.35 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEE 434 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~e 434 (745)
|...|..|+.++...+.++.....+..++..
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~ 62 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQ 62 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333333
No 105
>PRK08727 hypothetical protein; Validated
Probab=82.36 E-value=0.79 Score=47.84 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.6
Q ss_pred EEEeeCCCCCCCcccccC
Q 004553 128 TIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~G 145 (745)
.|+-||++|+||||-+..
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 489999999999998754
No 106
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.31 E-value=15 Score=45.45 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=40.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
.|.-.++.++..|..|+++++..-..+.++..+|+.++.++..|+++...+
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888777888888888888888888766543
No 107
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.27 E-value=83 Score=34.47 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 004553 507 EMLRRRLEEIEF 518 (745)
Q Consensus 507 e~Lr~~l~~Le~ 518 (745)
+.|-.++..|+.
T Consensus 181 N~L~Kqm~~l~~ 192 (310)
T PF09755_consen 181 NRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 108
>PRK08939 primosomal protein DnaI; Reviewed
Probab=82.21 E-value=0.81 Score=49.96 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=33.7
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccC-cceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLG-EKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G-~N~tIfaYGqTGSGKTyTm~G 145 (745)
..+|+.+.+.. ..+..++.. +...++.+..| ....|+-||++|+||||-+.+
T Consensus 123 ~atf~~~~~~~-~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDD-RDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCC-hHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 45677663332 355556653 45666665543 234688899999999998865
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.06 E-value=52 Score=31.98 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004553 505 EVEMLRRRL 513 (745)
Q Consensus 505 e~e~Lr~~l 513 (745)
..+.|..++
T Consensus 130 k~eel~~k~ 138 (143)
T PF12718_consen 130 KYEELEEKY 138 (143)
T ss_pred HHHHHHHHH
Confidence 333333333
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=48 Score=40.20 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 497 ERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 497 e~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.|+...|..+-.|+.+...|+.||
T Consensus 423 ~Qk~reqe~iv~~nak~~ql~~el 446 (1118)
T KOG1029|consen 423 NQKNREQEWIVYLNAKKKQLQQEL 446 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.93 E-value=52 Score=31.95 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
-..++.+|..|..++...+.....+.........++..|..++..+.
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665666666666666665443
No 112
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.88 E-value=75 Score=33.73 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 469 LKHQLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 469 l~~ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..++|....+++...++++-+.-. .+...|.-+|+++...|.+|+.|+..+
T Consensus 251 ~seElkssq~eL~dfm~eLdedVE-gmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 251 QSEELKSSQEELYDFMEELDEDVE-GMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556666555543222 567778888888888898888888877
No 113
>PRK10436 hypothetical protein; Provisional
Probab=81.76 E-value=0.55 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.7
Q ss_pred cccCcceEEEeeCCCCCCCcccccC
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
++..-++.|+..|+||||||.||+.
T Consensus 213 ~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 213 ALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHhcCCeEEEECCCCCChHHHHHH
Confidence 3445588999999999999999853
No 114
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.68 E-value=53 Score=43.76 Aligned_cols=40 Identities=35% Similarity=0.229 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 410 KLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEK 449 (745)
Q Consensus 410 ~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~ 449 (745)
.|+..+.....++......+..++.++.+.+++-+.+.++
T Consensus 1261 plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1261 PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555666665555555544443
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.55 E-value=74 Score=33.39 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++.++..++.++...+.+...+.++|
T Consensus 202 Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 202 LEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 116
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.50 E-value=41 Score=34.19 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004553 492 RRRMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 492 ~~~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
.+++.+++.-+...+..|+.+|+
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 117
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=80.98 E-value=4.8 Score=49.96 Aligned_cols=46 Identities=30% Similarity=0.360 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
++-.-|++.|.+-+.....++++.++.+..+.+|.+++..|+.-|.
T Consensus 181 skkEvm~EiIaKSK~~K~erq~~ke~~~~~~e~LD~~~~~l~~~l~ 226 (840)
T PF04147_consen 181 SKKEVMEEIIAKSKFYKAERQKEKEEDEDLTEKLDEDFKDLMSLLA 226 (840)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 3445577777777777777777778888888888888888877663
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.90 E-value=63 Score=35.60 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
|...+..|+.....|............++......+..++..|++...
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555555555555555433
No 119
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.77 E-value=46 Score=43.71 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFELCHS 523 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s 523 (745)
.|+.++.++..+++.++..+.+++.++...
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666666666666666666666655433
No 120
>PRK06835 DNA replication protein DnaC; Validated
Probab=80.51 E-value=0.88 Score=50.19 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 107 DSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 107 ~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..++.. +...|+++-.+. ..|+-||++|+||||.+.+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 344433 445677665444 5588899999999998754
No 121
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.46 E-value=0.59 Score=55.28 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=22.6
Q ss_pred hhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 118 ISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 118 V~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
+..++..-++.|+..|+||||||.||+.
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 3445556688999999999999999854
No 122
>PRK06921 hypothetical protein; Provisional
Probab=80.45 E-value=1.2 Score=47.54 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=29.5
Q ss_pred eEEeccccCCCcch-HHHHHHHHHHhhhhhcc---cCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEED-LDSFYKKFVESRISGVK---LGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~-Q~~vy~~~v~plV~~vl---~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.++||..-+..... ...++. .+...++++- .+....|+-||++|+||||.+..
T Consensus 80 ~~~F~nf~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 80 KLTFKNFKTEGKPQAIKDAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred hhhhhcCccCCccHHHHHHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 46677642222111 123333 3444555442 12344678899999999998754
No 123
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.37 E-value=67 Score=32.18 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004553 500 LQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 500 ~~~q~e~e~Lr~~l~~Le~ 518 (745)
...+...+.+.+.+.++++
T Consensus 168 ~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 168 ERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 124
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.24 E-value=55 Score=35.81 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEE 434 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~e 434 (745)
..|+.++..|+.+|...+.+...+......+++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Ee 195 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEE 195 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccH
Confidence 344555555555555555444444433333333
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.10 E-value=1.3 Score=45.20 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=28.8
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
.++||.. ... .+..++.. +..++ ..+....|+-||++|+||||.+.
T Consensus 11 ~~~~~~~-~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNF-YAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCc-CcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 4778876 322 33334443 22222 23556789999999999999873
No 126
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.02 E-value=79 Score=39.92 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004553 500 LQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 500 ~~~q~e~e~Lr~~l~~Le~eL 520 (745)
...+.++..|+++++....+|
T Consensus 439 ~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 439 EHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455554444444
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=79.79 E-value=1.5 Score=45.13 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=29.0
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
..|+||.+ +.. ..+ .++ ..+..++.. .+.+..|+-||++|+||||.+.
T Consensus 13 ~~~~~d~f-~~~-~~~-~~~-~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNF-VAG-ENA-ELV-ARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred Chhhhccc-ccC-CcH-HHH-HHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 35888887 322 222 232 234444442 2334578899999999999864
No 128
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.73 E-value=0.76 Score=41.62 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=14.7
Q ss_pred EEeeCCCCCCCcccccC
Q 004553 129 IMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~G 145 (745)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999865
No 129
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.67 E-value=85 Score=38.78 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..+++...+.++..++.++..|+.+|
T Consensus 463 ~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 463 RQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556666777777777777777776
No 130
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.61 E-value=41 Score=42.61 Aligned_cols=12 Identities=58% Similarity=1.057 Sum_probs=10.5
Q ss_pred eCCCCCCCcccc
Q 004553 132 YGPTGSGKSHTM 143 (745)
Q Consensus 132 YGqTGSGKTyTm 143 (745)
.|+.||||+-.|
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 499999999875
No 131
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=79.56 E-value=67 Score=34.85 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 004553 503 QQEVEMLRRRLEEI 516 (745)
Q Consensus 503 q~e~e~Lr~~l~~L 516 (745)
+.+...|+.+|+.|
T Consensus 283 ~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 283 QEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 44555566666555
No 132
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.51 E-value=66 Score=43.45 Aligned_cols=44 Identities=36% Similarity=0.431 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
+..+...+..++.++...+..+.+++....++..+...|..+++
T Consensus 840 ~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~ 883 (1930)
T KOG0161|consen 840 MRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQ 883 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666665554
No 133
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.36 E-value=85 Score=40.75 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=12.1
Q ss_pred HHhhhHHHHHhhcccchhhh
Q 004553 681 SRRLRIQNIFTLCGNNRELS 700 (745)
Q Consensus 681 ~r~~~~~~~~~~~~~~~~~~ 700 (745)
|--++.|||=.|-|=-+-|+
T Consensus 1056 ppgK~~~~l~~LSGGEKsLt 1075 (1163)
T COG1196 1056 PPGKKLQSLSLLSGGEKSLT 1075 (1163)
T ss_pred CCCCCccchhhcCCcHHHHH
Confidence 34455666666666666655
No 134
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.36 E-value=1.4 Score=49.25 Aligned_cols=17 Identities=53% Similarity=1.112 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
..++.||.||||||.|+
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 34999999999999986
No 135
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.30 E-value=0.78 Score=53.28 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=22.1
Q ss_pred hhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 118 ISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 118 V~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
+..++..-++.|+..|+||||||.||..
T Consensus 234 l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 234 FERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3445556678899999999999999853
No 136
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.21 E-value=1.5 Score=48.39 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=16.9
Q ss_pred CcceEEEeeCCCCCCCcccc
Q 004553 124 GEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm 143 (745)
+....++-||++|+|||+++
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567899999999999975
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=78.98 E-value=1.2e+02 Score=37.63 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLR 440 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr 440 (745)
+..++..+..++.++...+.+.++...+-+++..+..+|+
T Consensus 360 ~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 360 IEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444444444444444433
No 138
>PF13245 AAA_19: Part of AAA domain
Probab=78.96 E-value=0.86 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=14.6
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
+..++..|+.|||||+|+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3445558999999999963
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.88 E-value=1.2 Score=50.53 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=28.6
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
..|+||..+.++ +....|.. +..+-+. -.+.---||-||.+|+||||-|.
T Consensus 82 ~~ytFdnFv~g~--~N~~A~aa-~~~va~~-~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVGP--SNRLAYAA-AKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeCC--chHHHHHH-HHHHHhc-cCCcCCcEEEECCCCCCHHHHHH
Confidence 468999864433 33333322 2222222 12223347889999999999884
No 140
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.86 E-value=92 Score=37.02 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=8.4
Q ss_pred CccccccccccCCC
Q 004553 565 VEPFVRDLKHVDRP 578 (745)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (745)
..||...++.++..
T Consensus 429 ~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 429 PRPFEDELRALKEL 442 (582)
T ss_pred CCCHHHHHHHHHHh
Confidence 46777776644444
No 141
>PRK08084 DNA replication initiation factor; Provisional
Probab=78.82 E-value=1 Score=47.08 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=28.7
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|+||.. +.. .+...+.. +..++. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f-~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASF-YPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCcccc-ccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 5788876 322 33444433 333332 12224688999999999999854
No 142
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.60 E-value=1.2e+02 Score=35.46 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 471 HQLEKKLEECQRMAEEFVEI---ERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 471 ~ele~~~ee~~~~~e~~~e~---e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.-+.++++.+++.+++.... ++-.+..+|..+++.+..+..+-..|-+-|
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665555544322 122456677777777777777777777666
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=78.56 E-value=1.7 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.881 Sum_probs=16.6
Q ss_pred CcceEEEeeCCCCCCCcccc
Q 004553 124 GEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm 143 (745)
+....++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44556889999999999985
No 144
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.45 E-value=83 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004553 498 RILQQQQEVEMLRRRLEEIEFELCHS 523 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL~~s 523 (745)
.+.+...-.+.||.++..|+..|+..
T Consensus 166 ~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 166 TIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555556777888888888877543
No 145
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.35 E-value=65 Score=40.91 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004553 503 QQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 503 q~e~e~Lr~~l~~Le~eL 520 (745)
+.+++.+..+++.++..+
T Consensus 906 k~kv~~~~~~~~~l~~~i 923 (1293)
T KOG0996|consen 906 KDKVEKINEQLDKLEADI 923 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 146
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.35 E-value=56 Score=38.39 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=6.4
Q ss_pred HHHHHHhcccc
Q 004553 155 KSLKDILGDES 165 (745)
Q Consensus 155 ral~~LF~~i~ 165 (745)
-++..||..+.
T Consensus 107 ~iFkfLY~~Ld 117 (581)
T KOG0995|consen 107 AIFKFLYGFLD 117 (581)
T ss_pred HHHHHHHhccC
Confidence 35666666654
No 147
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=78.13 E-value=27 Score=32.17 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004553 498 RILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.++..++++|++++.+|+.++
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 84 EMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777888888777765
No 148
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.04 E-value=24 Score=40.58 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 493 RRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 493 ~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.++.++..+++.+...++..+.+|.+.|
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777888888888777
No 149
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=77.84 E-value=0.87 Score=46.94 Aligned_cols=15 Identities=53% Similarity=0.864 Sum_probs=12.5
Q ss_pred EeeCCCCCCCccccc
Q 004553 130 MMYGPTGSGKSHTMF 144 (745)
Q Consensus 130 faYGqTGSGKTyTm~ 144 (745)
..+|.||||||+|+-
T Consensus 27 ~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 27 AIFGTTGSGKSNTVK 41 (229)
T ss_pred EEECCCCCCHHHHHH
Confidence 445999999999983
No 150
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.83 E-value=0.91 Score=46.15 Aligned_cols=19 Identities=47% Similarity=0.793 Sum_probs=16.4
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
++.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999974
No 151
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=77.68 E-value=1.3e+02 Score=35.78 Aligned_cols=9 Identities=22% Similarity=0.032 Sum_probs=4.7
Q ss_pred hHHhhhHHH
Q 004553 680 SSRRLRIQN 688 (745)
Q Consensus 680 ~~r~~~~~~ 688 (745)
.+-+.|.+.
T Consensus 524 ~~ilarae~ 532 (582)
T PF09731_consen 524 ESILARAEY 532 (582)
T ss_pred HHHHHHHHH
Confidence 455555544
No 152
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.57 E-value=82 Score=41.85 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCCccccc
Q 004553 128 TIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~ 144 (745)
++.-+|++|+|||.+|-
T Consensus 29 ~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45567999999998874
No 153
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.43 E-value=81 Score=40.92 Aligned_cols=8 Identities=13% Similarity=0.642 Sum_probs=4.6
Q ss_pred eeEEeccc
Q 004553 91 RDFSLDGV 98 (745)
Q Consensus 91 ~~F~FD~V 98 (745)
..|.+|+.
T Consensus 110 S~Y~INg~ 117 (1163)
T COG1196 110 SEYYINGE 117 (1163)
T ss_pred cEEEECCc
Confidence 55666654
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.42 E-value=50 Score=36.32 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~ 518 (745)
..++..++....+....+++.|++
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555566666666655
No 155
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.40 E-value=70 Score=36.41 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHhcccc
Q 004553 358 KEIHKTICTLEYGAKAKCII 377 (745)
Q Consensus 358 ~~~~ETlsTLrfa~rak~I~ 377 (745)
.+...-..|..-+.++..|.
T Consensus 107 ~~~~~~s~~~~~~~~~f~i~ 126 (447)
T KOG2751|consen 107 SNTKTLSATINVLTRLFDIL 126 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 33433344455555555554
No 156
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.30 E-value=1.5 Score=46.82 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=25.0
Q ss_pred HHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 114 VESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 114 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
+.+++.++.--.-+.|+..|+|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3456666666778899999999999999984
No 157
>PRK08181 transposase; Validated
Probab=77.26 E-value=2.2 Score=45.72 Aligned_cols=21 Identities=38% Similarity=0.862 Sum_probs=17.3
Q ss_pred cCcceEEEeeCCCCCCCcccccC
Q 004553 123 LGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 3554 78899999999999865
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.80 E-value=1.2e+02 Score=33.74 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
....++.+.+.++..++.++..++..+
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777777777766655
No 159
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.78 E-value=1.4e+02 Score=37.05 Aligned_cols=44 Identities=23% Similarity=0.173 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 405 DQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 405 ~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
+..+..++..+...+.+.++.+...++..++.++||.++.++..
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666667777778777765543
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.77 E-value=1.1e+02 Score=32.80 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 405 DQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 405 ~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
=+.|..|...++.+.++....+.+|..++.-+.+-+++.+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e 56 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE 56 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999887776665543
No 161
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.64 E-value=0.82 Score=42.25 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=12.9
Q ss_pred ceEEEeeCCCCCCCcccc
Q 004553 126 KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm 143 (745)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999975
No 162
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.06 E-value=1.2e+02 Score=32.77 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHH--HHHHhcc
Q 004553 357 PKEIHKTICTLE--YGAKAKC 375 (745)
Q Consensus 357 ~~~~~ETlsTLr--fa~rak~ 375 (745)
..++...+.-++ |...+..
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~ 184 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQK 184 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhh
Confidence 334666666654 5555544
No 163
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.96 E-value=26 Score=32.13 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFELC 521 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL~ 521 (745)
+.+.++..+...|..|-++++.|..+|-
T Consensus 44 k~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 44 KLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999999999984
No 164
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.94 E-value=73 Score=38.19 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFELCHSR 524 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~ 524 (745)
+++++.++..++....+.+.+|..++.+.+
T Consensus 452 ~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 452 LREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445555555555555555555554333
No 165
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.75 E-value=68 Score=38.66 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004553 423 NEAHDKLLKKEEEVSQLRAKLQL 445 (745)
Q Consensus 423 ~~~~~~l~~~~ee~~~Lr~~l~~ 445 (745)
..+..+++++..++..++++++.
T Consensus 166 ~kl~~~~qe~naeL~rarqreem 188 (916)
T KOG0249|consen 166 RKLEEQLEELNAELQRARQREKM 188 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555443
No 166
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=75.70 E-value=1.2 Score=49.33 Aligned_cols=19 Identities=53% Similarity=0.809 Sum_probs=17.0
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
.+.|+-.|+||||||.||.
T Consensus 122 ~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5778999999999999984
No 167
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.69 E-value=77 Score=39.64 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004553 501 QQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 501 ~~q~e~e~Lr~~l~~Le 517 (745)
-++.|+..|-.+|..|.
T Consensus 541 ~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 541 NLEEENAHLLKQIQSLK 557 (1195)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=75.67 E-value=1e+02 Score=40.10 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=26.4
Q ss_pred cCcceEEEeeCC-CCCCCcccccCCCC----------CCchHHHHHHHHhcccccc
Q 004553 123 LGEKCTIMMYGP-TGSGKSHTMFGCAK----------QPGIVYKSLKDILGDESDN 167 (745)
Q Consensus 123 ~G~N~tIfaYGq-TGSGKTyTm~G~~~----------~~GIIpral~~LF~~i~~~ 167 (745)
.|.-|||++|-- .|-|=.|-..+.+- ..++.+.....++..+...
T Consensus 78 ~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~~~~~ 133 (1201)
T PF12128_consen 78 DGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELIRELRRK 133 (1201)
T ss_pred CCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHHHHHHHhC
Confidence 466677777744 22233488877651 1235666777777766544
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=75.66 E-value=1.1 Score=40.40 Aligned_cols=19 Identities=37% Similarity=0.607 Sum_probs=15.6
Q ss_pred eEEEeeCCCCCCCcccccC
Q 004553 127 CTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G 145 (745)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3577899999999998743
No 170
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.38 E-value=1.2 Score=42.83 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=17.1
Q ss_pred cccCcceEEEeeCCCCCCCccccc
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
+..|.| ++..|+||||||....
T Consensus 11 i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 11 IISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHcCCC--EEEECCCCCccHHHHH
Confidence 335666 6788999999999964
No 171
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=75.32 E-value=1.3 Score=49.70 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=17.0
Q ss_pred cceEEEeeCCCCCCCccccc
Q 004553 125 EKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~ 144 (745)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 35678889999999999984
No 172
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=74.96 E-value=1.3 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.7
Q ss_pred cceEEEeeCCCCCCCccccc
Q 004553 125 EKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~ 144 (745)
-.+.|+..|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46889999999999999984
No 173
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.93 E-value=65 Score=38.01 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=5.8
Q ss_pred ccccccCCC
Q 004553 335 LLQDSFEDD 343 (745)
Q Consensus 335 LLqdsLgG~ 343 (745)
+|++.+|+.
T Consensus 74 ~lr~~~~~~ 82 (546)
T KOG0977|consen 74 LLRGVVGRE 82 (546)
T ss_pred HHHhhccCC
Confidence 667777654
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.79 E-value=1.4e+02 Score=32.89 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAK 442 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~ 442 (745)
|...+..|+..-..|.............+......+..++..|++.
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555444444444444555555555555555443
No 175
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.72 E-value=71 Score=34.34 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEK 449 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~ 449 (745)
+...|+.+...+..++..+.....+...+..+|.+...|+.+.+++|+.++..
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445556666666666666666666777777777777777777777766543
No 176
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=74.64 E-value=72 Score=38.90 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=4.6
Q ss_pred CCchhHHhhh
Q 004553 676 EDTESSRRLR 685 (745)
Q Consensus 676 ~~~~~~r~~~ 685 (745)
.++.++|-.|
T Consensus 445 ~~d~~t~~~~ 454 (1064)
T KOG1144|consen 445 VEDAATRTKR 454 (1064)
T ss_pred cchhhhhhhh
Confidence 3444565433
No 177
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.53 E-value=1e+02 Score=39.15 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
|...++.|.+.+.+..-.++....+-.++.+++..++.|+.+.
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555666655555555443
No 178
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=74.48 E-value=7.7 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=18.6
Q ss_pred hhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 117 RISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 117 lV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
++..+++|.|..+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 3455678988654 569999999775
No 179
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.26 E-value=1.4e+02 Score=36.81 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 499 ILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~e 519 (745)
..+++.+..+++.+++.+-.+
T Consensus 808 l~~~q~e~~~~keq~~t~~~~ 828 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLER 828 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544433
No 180
>PRK03918 chromosome segregation protein; Provisional
Probab=74.06 E-value=1.4e+02 Score=37.08 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=11.3
Q ss_pred EeeCCCCCCCcccc
Q 004553 130 MMYGPTGSGKSHTM 143 (745)
Q Consensus 130 faYGqTGSGKTyTm 143 (745)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36899999998654
No 181
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.03 E-value=81 Score=29.83 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
..+..|...|..+..++.....++..+...-..+.+|+..|..+..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666555443
No 182
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.92 E-value=1.2e+02 Score=32.76 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 004553 502 QQQEVEMLRRR 512 (745)
Q Consensus 502 ~q~e~e~Lr~~ 512 (745)
++.++..++.+
T Consensus 267 le~el~~l~~~ 277 (312)
T PF00038_consen 267 LEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhHHHHHHH
Confidence 33333333333
No 183
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.87 E-value=1.2 Score=47.35 Aligned_cols=18 Identities=44% Similarity=0.863 Sum_probs=15.9
Q ss_pred ceEEEeeCCCCCCCcccc
Q 004553 126 KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm 143 (745)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 567788899999999997
No 184
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.72 E-value=1.7e+02 Score=33.46 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=10.9
Q ss_pred cCCCCccccccccccCCCccccc
Q 004553 561 DMGDVEPFVRDLKHVDRPVHQQD 583 (745)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~ 583 (745)
-|....+|.+.......+|.|.-
T Consensus 285 ~i~~t~~~~~~~G~l~~PV~G~i 307 (420)
T COG4942 285 LISSTGGFGALRGQLAWPVTGRI 307 (420)
T ss_pred ccccccccccccCCcCCCCCCcH
Confidence 34444555555554444444443
No 185
>PF12846 AAA_10: AAA-like domain
Probab=73.68 E-value=1.3 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.502 Sum_probs=15.8
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4456788999999999885
No 186
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=73.44 E-value=2.9 Score=39.86 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.8
Q ss_pred eEEEe-eCCCCCCCcccccCCCCCCchHHHHHHHHhcc
Q 004553 127 CTIMM-YGPTGSGKSHTMFGCAKQPGIVYKSLKDILGD 163 (745)
Q Consensus 127 ~tIfa-YGqTGSGKTyTm~G~~~~~GIIpral~~LF~~ 163 (745)
..|++ .|.||+||||+- ..+.+.||..
T Consensus 53 pLVlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred CEEEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 45666 599999999963 4566777765
No 187
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.41 E-value=1.2e+02 Score=31.70 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 004553 395 VILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLE 474 (745)
Q Consensus 395 ~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele 474 (745)
.++...|..++..+.+++............++.++.++.....++..+-...-.. -.+.+..+..++.+.+...+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~----g~E~LAr~al~~~~~le~~~- 101 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA----GNEDLAREALEEKQSLEDLA- 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH-
Confidence 4666667777777766666666555555556666666655555554433211111 12444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 475 KKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 475 ~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~e 519 (745)
...+..+....+.. .+++..+..++..+..++.+.+.+...
T Consensus 102 ---~~~~~~~~~~~~~~-~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 102 ---KALEAELQQAEEQV-EKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred ---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111111 134444555555555555555555443
No 188
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.25 E-value=2 Score=43.01 Aligned_cols=19 Identities=37% Similarity=0.906 Sum_probs=15.7
Q ss_pred eEEEeeCCCCCCCcccccC
Q 004553 127 CTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G 145 (745)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3478899999999998765
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=73.08 E-value=82 Score=39.33 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=9.2
Q ss_pred EeeCCCCCCCccc
Q 004553 130 MMYGPTGSGKSHT 142 (745)
Q Consensus 130 faYGqTGSGKTyT 142 (745)
+-+|++|||||..
T Consensus 27 ~i~G~Ng~GKSti 39 (880)
T PRK02224 27 VIHGVNGSGKSSL 39 (880)
T ss_pred EEECCCCCCHHHH
Confidence 3378888888654
No 190
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.97 E-value=2.5 Score=48.60 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=31.3
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhc--ccC--cceEEEeeCCCCCCCcccccC
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGV--KLG--EKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~v--l~G--~N~tIfaYGqTGSGKTyTm~G 145 (745)
..|+||..+.++ .+...|. .+..+.... ..| ||. +|-||++|+||||.+..
T Consensus 106 ~~~tFdnFv~g~--~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 106 PLMTFANFLVTP--ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ccccccceeeCC--cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 469999874332 3443443 345454432 223 454 56799999999998753
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.90 E-value=1.4e+02 Score=32.08 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLR 440 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr 440 (745)
.+|..|...|..++.......++..+...+|.+++.+|..++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 192
>PRK03918 chromosome segregation protein; Provisional
Probab=72.87 E-value=1.2e+02 Score=37.92 Aligned_cols=9 Identities=0% Similarity=0.291 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 004553 234 GKISKEIQK 242 (745)
Q Consensus 234 ~e~~~~l~~ 242 (745)
.++...|..
T Consensus 111 ~~~~~~i~~ 119 (880)
T PRK03918 111 SSVREWVER 119 (880)
T ss_pred HHHHHHHHH
Confidence 344444443
No 193
>PHA02562 46 endonuclease subunit; Provisional
Probab=72.87 E-value=91 Score=36.59 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=12.8
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556899999998644
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=72.82 E-value=1.2e+02 Score=31.21 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 395 VILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 395 ~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
.++...|..++..+.+++..+.........++.++...+.++..+..+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777776666666666666666666666655544
No 195
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.77 E-value=1.6e+02 Score=32.59 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 490 IERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 490 ~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+|.+.+.+++.++|.|.+-++..|...+.-|
T Consensus 196 ~ENRyL~erl~q~qeE~~l~k~~i~KYK~~l 226 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELLKQTINKYKSAL 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677788888888888888887777766
No 196
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.72 E-value=1.6e+02 Score=32.78 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004553 501 QQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 501 ~~q~e~e~Lr~~l~~Le~eL 520 (745)
+...+...++.++..++..+
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l 262 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666555
No 197
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=72.67 E-value=95 Score=38.52 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=6.2
Q ss_pred eCCCCCCCcccc
Q 004553 132 YGPTGSGKSHTM 143 (745)
Q Consensus 132 YGqTGSGKTyTm 143 (745)
.+++.||.|.-+
T Consensus 213 ~~~s~sg~t~y~ 224 (782)
T PRK00409 213 HDQSSSGATLYI 224 (782)
T ss_pred eeEECCCCEEEE
Confidence 345556655444
No 198
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.64 E-value=1.2e+02 Score=34.41 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEK 449 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~ 449 (745)
+..++++-......+..++..+..+...+.+.+...+.+++.|+.+..++.+.
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443444444444444444444444555555555555555555444443
No 199
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=72.46 E-value=1.6 Score=46.59 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=18.7
Q ss_pred cccCcceEEEeeCCCCCCCccccc
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
++..-.+.|+-.|.||||||.||.
T Consensus 75 ~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 75 LLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHhcCCCEEEEECCCCCcHHHHHH
Confidence 333446678889999999999984
No 200
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.39 E-value=2.5 Score=45.96 Aligned_cols=18 Identities=39% Similarity=0.840 Sum_probs=14.8
Q ss_pred eEEEeeCCCCCCCccccc
Q 004553 127 CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~ 144 (745)
--.+-||+.|+|||.|..
T Consensus 58 p~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred ceEEeeCCCCCcHhHHHH
Confidence 346679999999999973
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.06 E-value=1.4e+02 Score=31.54 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 004553 492 RRRMEERILQQQQEVEMLRRRLEEIEFE-L 520 (745)
Q Consensus 492 ~~~~ee~i~~~q~e~e~Lr~~l~~Le~e-L 520 (745)
+.+..+.+..+..+...|+.+++++..+ +
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3355566777778888899999998888 5
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.99 E-value=3 Score=44.28 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 105 DLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 105 ~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.+..++.. +..++..+-+|. .++-||++|+||||-..+
T Consensus 87 ~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 87 IDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred hhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 34444443 444454444333 356699999999998754
No 203
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.71 E-value=2.1e+02 Score=33.47 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 004553 506 VEMLRRRLEEIE 517 (745)
Q Consensus 506 ~e~Lr~~l~~Le 517 (745)
...|+.+|..|.
T Consensus 167 ~~~L~~qi~~L~ 178 (475)
T PRK10361 167 RHTLAHEIRNLQ 178 (475)
T ss_pred HHHHHHHHHHHH
Confidence 344444554443
No 204
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=71.69 E-value=2.6 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=16.4
Q ss_pred cCcceEEEeeCCCCCCCcccc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm 143 (745)
....+.++-+|++|+|||+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHH
Confidence 333556788999999999876
No 205
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=71.53 E-value=3.4 Score=46.19 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 103 EEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 103 ~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+..|..+|+.++..+.. .. ...+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~--~~--~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN--EE--GLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc--cC--CcEEEEEcCCCCChhHHH
Confidence 46789999988776543 23 456688999999999985
No 206
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.37 E-value=1.8e+02 Score=34.45 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004553 500 LQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 500 ~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+..-.+++.+-..+..+-+.|
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555554
No 207
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=71.28 E-value=1.6 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=16.5
Q ss_pred ccCcceEEEeeCCCCCCCccccc
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
+...+..++..|..||||||+|.
T Consensus 14 l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 14 LTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHCTCSEEEEEESTTSTHHHHHH
T ss_pred HhcCCeEEEEEECCCCCHHHHHH
Confidence 33344455668999999999873
No 208
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.12 E-value=2.2e+02 Score=33.57 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 004553 505 EVEMLRRRLEEIEFE 519 (745)
Q Consensus 505 e~e~Lr~~l~~Le~e 519 (745)
|-+-|+-+|..|+.+
T Consensus 195 EyEglkheikRleEe 209 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEE 209 (772)
T ss_pred hhhHHHHHHHHHHHH
Confidence 334444445444443
No 209
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.87 E-value=2.1 Score=41.85 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=15.5
Q ss_pred hhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 116 SRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 116 plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.+++....|...+++-+|.+|+|||+.+
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3444344566778999999999999975
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.86 E-value=1.5e+02 Score=31.38 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 004553 507 EMLRRRLEEIEFEL 520 (745)
Q Consensus 507 e~Lr~~l~~Le~eL 520 (745)
+++++=++.+..|.
T Consensus 149 ek~r~vlea~~~E~ 162 (251)
T PF11932_consen 149 EKFRRVLEAYQIEM 162 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 211
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=70.66 E-value=2.3e+02 Score=34.18 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQME 414 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e 414 (745)
+..++..|+.++..|..+
T Consensus 85 Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444454444444433
No 212
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.63 E-value=1.2e+02 Score=30.34 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=5.8
Q ss_pred HHHHHHHHhc
Q 004553 365 CTLEYGAKAK 374 (745)
Q Consensus 365 sTLrfa~rak 374 (745)
.|+.|..+..
T Consensus 3 DT~~~v~~Le 12 (177)
T PF07798_consen 3 DTHKFVKRLE 12 (177)
T ss_pred cHHHHHHHHH
Confidence 4666666654
No 213
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=70.53 E-value=4.3 Score=48.98 Aligned_cols=84 Identities=24% Similarity=0.324 Sum_probs=48.4
Q ss_pred CCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccCCC---CCCchH----HHHHHHHhccccccCCccc
Q 004553 100 LSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA---KQPGIV----YKSLKDILGDESDNGEKIG 172 (745)
Q Consensus 100 f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GII----pral~~LF~~i~~~~~~~~ 172 (745)
|.|...|..-+..+ ++++-.|...- ..+|.||||||+||..-- ..|-|| -.....|+..+...-...
T Consensus 8 ~~~~~~Q~~ai~~l----~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~- 81 (655)
T TIGR00631 8 FQPAGDQPKAIAKL----VEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPEN- 81 (655)
T ss_pred CCCChHHHHHHHHH----HHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence 77888888776654 44444553222 368999999999997632 223222 112333443332221111
Q ss_pred eeEEEEEEEEEEecceee
Q 004553 173 FSTFVQVTVLEIYNEEIY 190 (745)
Q Consensus 173 ~~~~V~vS~~EIYnE~I~ 190 (745)
.+...||||.-|.-..|
T Consensus 82 -~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 82 -AVEYFVSYYDYYQPEAY 98 (655)
T ss_pred -eEEEEeeecccCCcccc
Confidence 24567999999976643
No 214
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.52 E-value=1.3e+02 Score=35.37 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 499 ILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~e 519 (745)
+.+++.+...+...+.+++++
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 215
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.31 E-value=2e+02 Score=35.73 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
..|+..+..+..++.....++..++..|..+..+...++..+..+
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~l 327 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVL 327 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444555555555555455555555554444444444444433
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.24 E-value=1e+02 Score=30.45 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKER---------NEAHDKLLKKEEEVSQLRAKLQLVEEK 449 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~---------~~~~~~l~~~~ee~~~Lr~~l~~~e~~ 449 (745)
+..+|..|+.++..|+.+......++ .++...+..++.++..|..+|..+...
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555555555555555444444 344555666666666666666655543
No 217
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.12 E-value=1.4e+02 Score=32.31 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 407 FIYKLQMENKLREKERNEAHDKLLKKEEEVS 437 (745)
Q Consensus 407 ~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~ 437 (745)
.|.-|+..++..+..+.+.+.+|..+..++.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444333433333333
No 218
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.94 E-value=2e+02 Score=35.44 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004553 499 ILQQQQEVEMLRRRLEEIEFELC 521 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL~ 521 (745)
+..+-.+...+++++.+-...|.
T Consensus 216 ~sle~~~~q~~tq~vl~ev~QLs 238 (1265)
T KOG0976|consen 216 KSLELHKDQENTQKVLKEVMQLS 238 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666665555653
No 219
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.51 E-value=1.4e+02 Score=37.09 Aligned_cols=8 Identities=13% Similarity=-0.517 Sum_probs=3.5
Q ss_pred CceEEEEE
Q 004553 734 DVQVEVYA 741 (745)
Q Consensus 734 ~~~~~~~~ 741 (745)
+|-+-||+
T Consensus 774 ~Gat~V~l 781 (782)
T PRK00409 774 FGVTIVEL 781 (782)
T ss_pred CeEEEEEE
Confidence 44444443
No 220
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.33 E-value=1.8e+02 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLL 430 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~ 430 (745)
+...+..|++.-..|+.++.........+..++.
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~ 58 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENR 58 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444433333333333333
No 221
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.28 E-value=1.4e+02 Score=36.51 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=7.7
Q ss_pred ccCCCCCCCCchhHH
Q 004553 668 LASSPQKPEDTESSR 682 (745)
Q Consensus 668 ~~~~~~~~~~~~~~r 682 (745)
|..|+++.--|.+.|
T Consensus 687 fa~Stskk~sp~s~R 701 (861)
T PF15254_consen 687 FARSTSKKKSPLSER 701 (861)
T ss_pred cccCcccccCccccc
Confidence 455555555444444
No 222
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.07 E-value=1.1e+02 Score=40.39 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 004553 153 VYKSLKDIL 161 (745)
Q Consensus 153 Ipral~~LF 161 (745)
.-..|+.||
T Consensus 171 rk~~~d~if 179 (1311)
T TIGR00606 171 LKQKFDEIF 179 (1311)
T ss_pred HHHHHHHHh
Confidence 334444444
No 223
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.92 E-value=1.5e+02 Score=30.73 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLR 440 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr 440 (745)
++..-+.+|+..+.+.+..+.........++.++......+..+.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665555555555444444444444444444444443
No 224
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.84 E-value=41 Score=28.92 Aligned_cols=47 Identities=32% Similarity=0.311 Sum_probs=27.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAK 442 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~ 442 (745)
.|..+|..+-+.|..|++++...+.+...+......+..++.+|+.+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665555555555555555555543
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=68.81 E-value=1.8 Score=44.09 Aligned_cols=17 Identities=47% Similarity=0.804 Sum_probs=14.5
Q ss_pred EEEeeCCCCCCCccccc
Q 004553 128 TIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~ 144 (745)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999963
No 226
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.59 E-value=2.3 Score=42.95 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=18.5
Q ss_pred hhcccCcceEEEeeCCCCCCCcccc
Q 004553 119 SGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 119 ~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+.+-.|.+.+++-||+.|+|||+.|
T Consensus 13 ~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 13 ELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3333466788999999999999976
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.58 E-value=1.3e+02 Score=37.32 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=6.0
Q ss_pred eCCCCCCCcccc
Q 004553 132 YGPTGSGKSHTM 143 (745)
Q Consensus 132 YGqTGSGKTyTm 143 (745)
.+++.||.|.-+
T Consensus 208 ~~~S~sg~t~~~ 219 (771)
T TIGR01069 208 HDTSSSGETFYI 219 (771)
T ss_pred EEEeCCCCEEEE
Confidence 345555555444
No 228
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.37 E-value=2 Score=39.45 Aligned_cols=15 Identities=40% Similarity=0.862 Sum_probs=13.2
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999975
No 229
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.28 E-value=1.9e+02 Score=38.66 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=10.0
Q ss_pred CccccccccccCC
Q 004553 330 SKLTMLLQDSFED 342 (745)
Q Consensus 330 SKLTrLLqdsLgG 342 (745)
+.+|+.|+++|..
T Consensus 211 ~~i~~fl~~yll~ 223 (1486)
T PRK04863 211 SAITRSLRDYLLP 223 (1486)
T ss_pred HhHHHHHHHHcCC
Confidence 4678888888864
No 230
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.25 E-value=2.6e+02 Score=33.31 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=8.3
Q ss_pred hhhccchHHHHHHHHHH
Q 004553 302 AKINQGNIALKRVVESI 318 (745)
Q Consensus 302 ~~IN~SL~aLg~vI~aL 318 (745)
..+...+..|...+..+
T Consensus 201 ~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 201 DQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 231
>PRK02224 chromosome segregation protein; Provisional
Probab=68.03 E-value=2.1e+02 Score=35.82 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004553 500 LQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 500 ~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..++.++..++.++++++..|
T Consensus 380 ~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 380 EDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 232
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.74 E-value=1.6e+02 Score=30.81 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 496 EERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 496 ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
......+...+.+|..+|.+++...
T Consensus 112 ~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 112 EEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 233
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.66 E-value=92 Score=38.57 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=7.9
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
++-.|+.|+|||..|
T Consensus 325 liItGpNg~GKSTlL 339 (771)
T TIGR01069 325 LAITGPNTGGKTVTL 339 (771)
T ss_pred EEEECCCCCCchHHH
Confidence 344455555555554
No 234
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.66 E-value=1.7e+02 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004553 426 HDKLLKKEEEVSQLRA 441 (745)
Q Consensus 426 ~~~l~~~~ee~~~Lr~ 441 (745)
+..++.+++++..||.
T Consensus 303 qmr~qqleeentelRs 318 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 235
>PF13479 AAA_24: AAA domain
Probab=67.39 E-value=2.6 Score=43.35 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCCcccccC
Q 004553 126 KCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G 145 (745)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999998754
No 236
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.39 E-value=1.1e+02 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=9.1
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMEN 415 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~ 415 (745)
.|..++..|+.+-..|+.+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 237
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.27 E-value=2.4e+02 Score=32.41 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=4.9
Q ss_pred hhcccchhhhcc
Q 004553 691 TLCGNNRELSQH 702 (745)
Q Consensus 691 ~~~~~~~~~~~~ 702 (745)
.|-|++-.|.-.
T Consensus 365 slyg~~~~i~v~ 376 (420)
T COG4942 365 SLYGGNQSILVN 376 (420)
T ss_pred EEecccceeeec
Confidence 344444444433
No 238
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=67.18 E-value=2.5 Score=47.18 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=29.4
Q ss_pred ceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhccccccCCccceeEEEEEEEEEEecce
Q 004553 126 KCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEE 188 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i~~~~~~~~~~~~V~vS~~EIYnE~ 188 (745)
-+-|+-||.+||||||++ ..+|+.... -.||+.++|-|.=.
T Consensus 30 PS~~~iyG~sgTGKT~~~--------------r~~l~~~n~--------~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV--------------RQLLRKLNL--------ENVWLNCVECFTYA 70 (438)
T ss_pred ceeEEEeccCCCchhHHH--------------HHHHhhcCC--------cceeeehHHhccHH
Confidence 334688999999999985 556655421 15889999988543
No 239
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=66.98 E-value=4 Score=39.38 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.4
Q ss_pred EEEeeCCCCCCCcccccC
Q 004553 128 TIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~G 145 (745)
.++..|++|||||.++..
T Consensus 26 ~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 26 DVILAAPTGSGKTLAALL 43 (201)
T ss_pred cEEEECCCCCchhHHHHH
Confidence 456679999999998754
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.89 E-value=1.6e+02 Score=30.29 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEK 449 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~ 449 (745)
..-|++.|..++..+......+......-..++.++.++......++..
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777666666666666666677777766666655554
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.76 E-value=1.6e+02 Score=34.55 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 425 AHDKLLKKEEEVSQLRAKLQL 445 (745)
Q Consensus 425 ~~~~l~~~~ee~~~Lr~~l~~ 445 (745)
+..+......+...|..+|..
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~ 452 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLES 452 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555543
No 242
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.74 E-value=1.4e+02 Score=31.09 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++++....+..++.+|+.+.++|+..+
T Consensus 181 ~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 181 RLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 455555555666777777777777654
No 243
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=66.68 E-value=2.3e+02 Score=34.28 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=9.0
Q ss_pred CCCCccccccccccC
Q 004553 327 FRDSKLTMLLQDSFE 341 (745)
Q Consensus 327 yRdSKLTrLLqdsLg 341 (745)
.|+.--|+|++|-|.
T Consensus 435 lk~ela~~l~~DeLa 449 (961)
T KOG4673|consen 435 LKKELAAALLKDELA 449 (961)
T ss_pred HHHHHHHhhhhHHHH
Confidence 345556677776663
No 244
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.62 E-value=2.6e+02 Score=34.31 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDK-------LLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~-------l~~~~ee~~~Lr~~l~~~e~ 448 (745)
.+|+.|++++..+..+.......+.+.+.+ +....+.+..|..++..+..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667766666555544444444444333 34445555566666655544
No 245
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.77 E-value=2e+02 Score=30.99 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEE 434 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~e 434 (745)
+..+|..+...+..++.++.....++..++.+|..+++
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=65.51 E-value=2.5 Score=38.59 Aligned_cols=16 Identities=50% Similarity=0.831 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999874
No 247
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=65.49 E-value=2e+02 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=7.5
Q ss_pred HhhhccchHHHHHHH
Q 004553 301 TAKINQGNIALKRVV 315 (745)
Q Consensus 301 ~~~IN~SL~aLg~vI 315 (745)
+++|.+||..-.+.|
T Consensus 81 aAkiGqsllk~nk~L 95 (596)
T KOG4360|consen 81 AAKIGQSLLKANKAL 95 (596)
T ss_pred HHHHHHHHHhhhhhh
Confidence 445555555444443
No 248
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.44 E-value=3.1 Score=45.75 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=14.7
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
...|+..|.||||||++|.
T Consensus 148 ~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3456667999999997763
No 249
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=65.31 E-value=28 Score=41.97 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
++-..|.+.|.+-+.....++++..++.....++......|...|.
T Consensus 186 Sk~evm~EiIaKsK~~k~ErqkqKee~edltekLD~n~k~l~~~l~ 231 (823)
T KOG2147|consen 186 SKKEVMSEIIAKSKLYKHERQKQKEELEDLTEKLDSNFKDLMSKLS 231 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777766666666666767777777777776666665553
No 250
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=65.14 E-value=8.8 Score=44.11 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=26.2
Q ss_pred EeccccCCCcchHHHHHHHHHHhhhhhc-cc--Cc--ceEEEeeCCCCCCCcccc
Q 004553 94 SLDGVSLSEEEDLDSFYKKFVESRISGV-KL--GE--KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 94 ~FD~V~f~~~~~Q~~vy~~~v~plV~~v-l~--G~--N~tIfaYGqTGSGKTyTm 143 (745)
+|+.| .+-+..-+.+.+.+..|+...- +. |. ...|+-||++|+|||++.
T Consensus 181 ~~~DI-gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADI-GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHh-cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 34444 3333344455444444544321 11 21 124677999999999875
No 251
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.63 E-value=1.7e+02 Score=30.81 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 004553 512 RLEEIEFEL 520 (745)
Q Consensus 512 ~l~~Le~eL 520 (745)
+++.|+..+
T Consensus 132 Rl~~L~~~l 140 (251)
T PF11932_consen 132 RLARLRAML 140 (251)
T ss_pred HHHHHHHhh
Confidence 333333333
No 252
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=64.63 E-value=3.2 Score=41.81 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCCcccccC
Q 004553 128 TIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~G 145 (745)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456689999999998754
No 253
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.53 E-value=4.2 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=16.2
Q ss_pred CcceEEEeeCCCCCCCccccc
Q 004553 124 GEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm~ 144 (745)
|....++-||++|+|||+++.
T Consensus 34 ~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 333357889999999999873
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=64.46 E-value=4.5 Score=43.02 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=16.2
Q ss_pred cCcceEEEeeCCCCCCCcccccC
Q 004553 123 LGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 3544 56789999999998754
No 255
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.08 E-value=80 Score=32.87 Aligned_cols=6 Identities=0% Similarity=0.185 Sum_probs=2.8
Q ss_pred HHHHHH
Q 004553 513 LEEIEF 518 (745)
Q Consensus 513 l~~Le~ 518 (745)
+.+|.+
T Consensus 215 i~dl~~ 220 (290)
T COG4026 215 ISDLVK 220 (290)
T ss_pred HHHHHH
Confidence 344444
No 256
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=64.06 E-value=12 Score=46.20 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhcc
Q 004553 100 LSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGD 163 (745)
Q Consensus 100 f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~ 163 (745)
..+..-|...+ ..+.+|.|+.|+| +||||||-+- ++| +|..|+..
T Consensus 21 ~~~t~~Q~~a~--------~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~ 65 (814)
T COG1201 21 TSLTPPQRYAI--------PEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSL 65 (814)
T ss_pred CCCCHHHHHHH--------HHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhc
Confidence 45555555443 3466899998885 8999999884 333 56666655
No 257
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.85 E-value=3.4e+02 Score=34.45 Aligned_cols=25 Identities=12% Similarity=0.437 Sum_probs=13.9
Q ss_pred CceeEEeccccCCCcchHHHHHHHHH
Q 004553 89 GYRDFSLDGVSLSEEEDLDSFYKKFV 114 (745)
Q Consensus 89 ~~~~F~FD~V~f~~~~~Q~~vy~~~v 114 (745)
|...|..++. .-+...-+.+|..+.
T Consensus 111 G~~KylINGh-~a~~~~vq~lF~SVq 135 (1174)
T KOG0933|consen 111 GTNKYLINGH-LAQNSKVQDLFCSVQ 135 (1174)
T ss_pred CceeEEEcCe-eCchhHHHHHHHHhc
Confidence 3446877777 334444455665543
No 258
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=63.78 E-value=2.9 Score=45.53 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.9
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
.+.|+-.|.||||||.+|.
T Consensus 132 ~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4567889999999999873
No 259
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=63.68 E-value=2e+02 Score=38.04 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=15.2
Q ss_pred CCcccCCCC--ccccccccccCC
Q 004553 322 DSHVPFRDS--KLTMLLQDSFED 342 (745)
Q Consensus 322 ~~~VPyRdS--KLTrLLqdsLgG 342 (745)
...++|+-. +|+.+|.++|..
T Consensus 194 ~P~Ls~~~~~~~l~~~l~~~l~~ 216 (1353)
T TIGR02680 194 QPQLSKKPDEGVLSDALTEALPP 216 (1353)
T ss_pred CCCCCCCCChHHHHHHHHHhCCC
Confidence 445666655 699999999964
No 260
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=63.33 E-value=2.1e+02 Score=33.12 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 004553 361 HKTICTLEYGAK 372 (745)
Q Consensus 361 ~ETlsTLrfa~r 372 (745)
.|+|..|+-..+
T Consensus 316 NEvL~kLk~tn~ 327 (527)
T PF15066_consen 316 NEVLQKLKHTNR 327 (527)
T ss_pred HHHHHHHHhhhH
Confidence 344444444433
No 261
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=63.31 E-value=3.5 Score=46.56 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=29.9
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhh-ccc--C--cceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISG-VKL--G--EKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~-vl~--G--~N~tIfaYGqTGSGKTyTm 143 (745)
.+.||.+ .+-+..-+.+.+.+..|+... ++. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di-~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDI-GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHh-CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3556665 444444455555554554432 221 2 2345888999999999764
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=63.18 E-value=6.5 Score=42.35 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=14.7
Q ss_pred EEEeeCCCCCCCcccccC
Q 004553 128 TIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~G 145 (745)
.|+-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 555679999999999754
No 263
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.15 E-value=5.9 Score=44.79 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=16.3
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999973
No 264
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.11 E-value=1.9e+02 Score=33.41 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 004553 499 ILQQQQEVEMLRRRLEEIEFELCHSRDRD 527 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~ 527 (745)
++..-.+++.+-+++..|-.++..+++..
T Consensus 405 aq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 405 AQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 33444556666667777777776665444
No 265
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.01 E-value=2.1e+02 Score=30.34 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.....++.++...+........+|
T Consensus 101 ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 101 KEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544454
No 266
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.54 E-value=3.7e+02 Score=33.05 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=10.0
Q ss_pred ceEEEeeCCCCCCCccc
Q 004553 126 KCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyT 142 (745)
+.+|+.-|.+|+|||-.
T Consensus 144 SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 144 SQSIIVSGESGAGKTES 160 (1259)
T ss_pred cccEEEecCCCCCcchh
Confidence 44566666666666643
No 267
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=62.23 E-value=1.6e+02 Score=36.24 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 489 EIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 489 e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+.+.+.+...++++..+++++-.++++++.++
T Consensus 1001 E~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666777777777778887777
No 268
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=62.17 E-value=4.6 Score=44.92 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=15.6
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
.+.|+..|.||||||++|.
T Consensus 162 ~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred CCeEEEECCCCccHHHHHH
Confidence 4457788999999999874
No 269
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.84 E-value=2.2e+02 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKER 422 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~ 422 (745)
+..+|..|+..+.+++.++...+.+.
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~ 130 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEEN 130 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444443333
No 270
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=3.7e+02 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 496 EERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 496 ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+.++.+...+++.++.+...|+.|+
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~ 610 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEEL 610 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544
No 271
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=61.76 E-value=2.6 Score=48.75 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQL 439 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~L 439 (745)
..|+++|..|+..+....+.+++.+..|...+++..+|
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kl 409 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKL 409 (495)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34666777777666666666666666666555554444
No 272
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.67 E-value=2.6e+02 Score=30.98 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004553 502 QQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 502 ~q~e~e~Lr~~l~~Le~eL 520 (745)
-|..+-+|+.++++|.-|+
T Consensus 199 RQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 199 RQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555677777777776665
No 273
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.65 E-value=1e+02 Score=31.83 Aligned_cols=24 Identities=8% Similarity=0.308 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 497 ERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 497 e~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++..++.++++.++.+++.++.++
T Consensus 139 ~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 139 EENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 274
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.58 E-value=96 Score=35.04 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
|+.+|.++...+-+-..+|++|.+++
T Consensus 160 mekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 160 MEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 34445555555555555555555444
No 275
>PHA00729 NTP-binding motif containing protein
Probab=61.47 E-value=5.4 Score=41.75 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=20.7
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..+++.+..|--..|+.+|.+|+||||-...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 3344444433334789999999999997643
No 276
>PRK06547 hypothetical protein; Provisional
Probab=61.28 E-value=5.7 Score=39.62 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=18.8
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+.++..+..+.--.|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33444444444445666799999999864
No 277
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.18 E-value=2e+02 Score=32.76 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004553 495 MEERILQQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le 517 (745)
..++..++++-+|..+.+|..||
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777
No 278
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=61.17 E-value=5.3 Score=48.29 Aligned_cols=28 Identities=32% Similarity=0.750 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCCcccc--------cCCC--CCCchH
Q 004553 126 KCTIMMYGPTGSGKSHTM--------FGCA--KQPGIV 153 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm--------~G~~--~~~GII 153 (745)
|-.++.+|+||||||.-+ ||+. .++|+|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmI 308 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMI 308 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCee
Confidence 567888999999999887 3443 347776
No 279
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.12 E-value=2.3e+02 Score=32.26 Aligned_cols=46 Identities=28% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
..+.++.+.++..++....+....+..++..+..+-..++++++..
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~ 53 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEK 53 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666665543
No 280
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=61.05 E-value=3.8 Score=45.66 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=29.0
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.|.|+.| ..|+++-..+...+|+. .-+.|+-+|.+||||||.+
T Consensus 13 ~~pf~~i-----vGq~~~k~al~~~~~~p----~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAI-----VGQEEMKLALILNVIDP----KIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHH-----hChHHHHHHHHHhccCC----CCCeEEEEcCCCCCHHHHH
Confidence 5888888 34555544444444443 2245778999999999985
No 281
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.88 E-value=1.8e+02 Score=34.44 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 409 YKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 409 ~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
.-|+.++...+.....++.++.++++|+..+++++...
T Consensus 339 ~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 339 DVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666777777777777777766544
No 282
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=60.68 E-value=3 Score=42.17 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCCccccc
Q 004553 128 TIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~ 144 (745)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 46889999999999974
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=60.67 E-value=3.6 Score=38.61 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999874
No 284
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.60 E-value=2e+02 Score=35.30 Aligned_cols=15 Identities=0% Similarity=0.213 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHhCC
Q 004553 307 GNIALKRVVESIANG 321 (745)
Q Consensus 307 SL~aLg~vI~aL~~~ 321 (745)
+++--.++|.-|+.+
T Consensus 42 r~L~aeniiqdlrse 56 (1265)
T KOG0976|consen 42 RLLDAENIIQDLRSE 56 (1265)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445556666666554
No 285
>PRK12704 phosphodiesterase; Provisional
Probab=60.40 E-value=2.2e+02 Score=33.57 Aligned_cols=10 Identities=20% Similarity=0.342 Sum_probs=4.3
Q ss_pred cccccccCCC
Q 004553 555 VKSMDLDMGD 564 (745)
Q Consensus 555 ~~~~d~~~~~ 564 (745)
+..+.+-..|
T Consensus 211 ~~~v~lp~d~ 220 (520)
T PRK12704 211 VSVVNLPNDE 220 (520)
T ss_pred eeeeecCCch
Confidence 4444444434
No 286
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.32 E-value=3.1 Score=46.30 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=29.0
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhh-ccc--Cc--ceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISG-VKL--GE--KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~-vl~--G~--N~tIfaYGqTGSGKTyTm 143 (745)
.+.|+.+ .+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 118 ~~~~~di-~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDI-GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHh-CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4555665 444444445544444444331 111 21 335888999999999876
No 287
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.87 E-value=3.1e+02 Score=32.42 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=6.5
Q ss_pred eCCCCCCCcc
Q 004553 132 YGPTGSGKSH 141 (745)
Q Consensus 132 YGqTGSGKTy 141 (745)
||..+++|+|
T Consensus 14 FG~~~~~k~~ 23 (522)
T PF05701_consen 14 FGGSIDWKKH 23 (522)
T ss_pred cCCccccccC
Confidence 4555577777
No 288
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=59.87 E-value=1.6e+02 Score=31.95 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 004553 508 MLRRRLEEIEFEL 520 (745)
Q Consensus 508 ~Lr~~l~~Le~eL 520 (745)
...+++..|+.+|
T Consensus 281 ~~~~~~~~l~~ei 293 (297)
T PF02841_consen 281 GFQEEAEKLQKEI 293 (297)
T ss_dssp T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 289
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=59.56 E-value=3.1 Score=37.88 Aligned_cols=15 Identities=53% Similarity=0.935 Sum_probs=13.3
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 577999999999976
No 290
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.45 E-value=1.9e+02 Score=31.70 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++......++.++..|+.+|.+.+..|
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777888888887777665
No 291
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.85 E-value=5.2 Score=41.22 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=18.4
Q ss_pred ceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhc
Q 004553 126 KCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILG 162 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~ 162 (745)
+-.+++.|+.||||||.- +..+++.+.+
T Consensus 19 ~~~v~~~G~AGTGKT~LA---------~a~Al~~v~~ 46 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLA---------LAAALELVKE 46 (205)
T ss_dssp -SEEEEE--TTSSTTHHH---------HHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHH---------HHHHHHHHHh
Confidence 557899999999999874 3455555544
No 292
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=58.49 E-value=3.5e+02 Score=31.42 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004553 456 QEINVKVTERT---QILKHQLEKKLEECQRMAE 485 (745)
Q Consensus 456 ~e~~~k~~e~~---~~l~~ele~~~ee~~~~~e 485 (745)
..|..|+.+|. ..|+.+++.+.++++.+.+
T Consensus 319 ~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 319 NAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555553 3344555555555554443
No 293
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.33 E-value=15 Score=40.98 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=51.0
Q ss_pred eEEEEEeCCCCCCCCCCCCCceEEEcCCCCEEEEecCC------------CceeEEeccccCCCcchHHHHHHHHHHhhh
Q 004553 51 IEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF------------GYRDFSLDGVSLSEEEDLDSFYKKFVESRI 118 (745)
Q Consensus 51 VkV~vRIRP~~~~e~~~~~~~~v~i~~~~~~v~~~~~~------------~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV 118 (745)
-+.+|+|.+.-.++ .-.+...|.++.+..+|...-+. ....-+|+.| -+-+.+-+++.+.+-.|+.
T Consensus 95 ~~~vV~i~~~vd~~-~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dI-GGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 95 PKFVVNILSFVDRD-LLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDI-GGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CeEEEeccCCcCHH-HcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhc-cCHHHHHHHHHHHhccccc
Confidence 46777887765422 12234444444443333221111 1123456666 5556677788888778877
Q ss_pred hh-cc--cCcce--EEEeeCCCCCCCcc
Q 004553 119 SG-VK--LGEKC--TIMMYGPTGSGKSH 141 (745)
Q Consensus 119 ~~-vl--~G~N~--tIfaYGqTGSGKTy 141 (745)
+- +| -|..- .|+-||+.|+|||-
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 53 22 25543 58999999999983
No 294
>PRK00106 hypothetical protein; Provisional
Probab=58.23 E-value=3.8e+02 Score=31.82 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=4.4
Q ss_pred cccccccCCC
Q 004553 555 VKSMDLDMGD 564 (745)
Q Consensus 555 ~~~~d~~~~~ 564 (745)
+..+.|...+
T Consensus 226 vs~v~lp~de 235 (535)
T PRK00106 226 ITTVHLPDDN 235 (535)
T ss_pred eeeEEcCChH
Confidence 4444444444
No 295
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=58.00 E-value=5.1 Score=40.15 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=14.0
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
..++-.|+||||||.+|
T Consensus 26 ~~i~I~G~tGSGKTTll 42 (186)
T cd01130 26 KNILISGGTGSGKTTLL 42 (186)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44666799999999886
No 296
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=57.80 E-value=4.5 Score=43.18 Aligned_cols=16 Identities=38% Similarity=0.976 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
.|+-||++|+|||++-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 5788999999999763
No 297
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=57.79 E-value=2.7e+02 Score=31.37 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++.+-..+..+++..++++++++-++
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555665555555
No 298
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=57.39 E-value=4.9 Score=40.03 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999964
No 299
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.38 E-value=2.9e+02 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcccccccccC
Q 004553 499 ILQQQQEVEMLRRRLEEIEFELCHSRDRDVRSSKDLD 535 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~~~~~l~ 535 (745)
|..+=.||--|+++|.+++.|....++...+++..++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666678888888898888888666666666766665
No 300
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.25 E-value=4.2 Score=44.83 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.1
Q ss_pred eEEEeeCCCCCCCccccc
Q 004553 127 CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~ 144 (745)
..|+-.|.||||||.+|.
T Consensus 145 ~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 145 LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 347788999999999983
No 301
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=57.16 E-value=8.1 Score=43.47 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=33.7
Q ss_pred eeEEeccccCCCcchHHHHHHHHHHhhhhhccc--C--cceEEEeeCCCCCCCccc
Q 004553 91 RDFSLDGVSLSEEEDLDSFYKKFVESRISGVKL--G--EKCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 91 ~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~--G--~N~tIfaYGqTGSGKTyT 142 (745)
+.+.|+.+ .+.----..|.+.++..++.+++. | .--.|.-||+.|+|||+.
T Consensus 110 ~~~~f~~~-~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNL-VGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhh-cCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 34667766 233233346677777778887763 2 233577799999999976
No 302
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=56.95 E-value=5.2 Score=44.27 Aligned_cols=18 Identities=44% Similarity=0.835 Sum_probs=15.8
Q ss_pred eEEEeeCCCCCCCccccc
Q 004553 127 CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~ 144 (745)
+-|+-.|.||||||+++-
T Consensus 174 ~NILisGGTGSGKTTlLN 191 (355)
T COG4962 174 CNILISGGTGSGKTTLLN 191 (355)
T ss_pred eeEEEeCCCCCCHHHHHH
Confidence 778889999999999873
No 303
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.87 E-value=1.7e+02 Score=37.57 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=15.7
Q ss_pred EeeCCCCCCCcccccCCCCCCchHHHHHHHH
Q 004553 130 MMYGPTGSGKSHTMFGCAKQPGIVYKSLKDI 160 (745)
Q Consensus 130 faYGqTGSGKTyTm~G~~~~~GIIpral~~L 160 (745)
+..+..|+=-+-+-.|+++. |-|-+|+..
T Consensus 223 lkm~~dG~V~s~~aVGTPDY--ISPEvLqs~ 251 (1317)
T KOG0612|consen 223 LKMDADGTVRSSVAVGTPDY--ISPEVLQSQ 251 (1317)
T ss_pred HhcCCCCcEEeccccCCCCc--cCHHHHHhh
Confidence 33455666666666676653 445444433
No 304
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=56.84 E-value=98 Score=31.79 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 491 ERRRMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 491 e~~~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
+.+++.+.+.-+..-|..|+.+++
T Consensus 229 eEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 229 EEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555444444444544443
No 305
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=56.78 E-value=3.6 Score=43.71 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=21.0
Q ss_pred cceEEEeeCCCCCCCcccccCCCCCCchHHHHHHHHhcc
Q 004553 125 EKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGD 163 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~~LF~~ 163 (745)
.++.++..|..|||||+|| +.|++.-|...
T Consensus 12 ~~~~~lV~a~AGSGKT~~l---------~~ri~~ll~~~ 41 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL---------LERIAYLLYEG 41 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH---------HHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCchHHH---------HHHHHHhhccc
Confidence 4667788899999999996 55666555544
No 306
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.70 E-value=3.7e+02 Score=31.16 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 004553 497 ERILQQQQEV 506 (745)
Q Consensus 497 e~i~~~q~e~ 506 (745)
++...+|.|.
T Consensus 492 qefLslqeEf 501 (527)
T PF15066_consen 492 QEFLSLQEEF 501 (527)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 307
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=56.69 E-value=1.2e+02 Score=31.26 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENK 416 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~ 416 (745)
+|+-|++.+...+.++.
T Consensus 11 EIsLLKqQLke~q~E~~ 27 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVN 27 (202)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34445554444444333
No 308
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=56.62 E-value=5.7 Score=46.61 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=22.0
Q ss_pred HHhhhhhcccCcc--eEEEeeCCCCCCCcccc
Q 004553 114 VESRISGVKLGEK--CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 114 v~plV~~vl~G~N--~tIfaYGqTGSGKTyTm 143 (745)
|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4555555555543 46788999999999997
No 309
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.54 E-value=4.6e+02 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 496 EERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 496 ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
-..+...+..+..|..++.+|+.+|
T Consensus 857 ~~~l~~~~~~~~~le~k~~eL~k~l 881 (1822)
T KOG4674|consen 857 LTSLDSVSTNIAKLEIKLSELEKRL 881 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777777776
No 310
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.45 E-value=4.5e+02 Score=32.03 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.++.+...++.+++.|+.++..+|+-.
T Consensus 296 ~l~~~~~~LELeN~~l~tkL~rwE~~~ 322 (716)
T KOG4593|consen 296 KLQSTLLGLELENEDLLTKLQRWERAD 322 (716)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888888887644
No 311
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.40 E-value=1.7e+02 Score=27.15 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
....|..+..++..|+..+..++..|
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666665
No 312
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=56.39 E-value=3.7e+02 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 495 MEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 495 ~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+.+.+..+.......+.++..+...|
T Consensus 402 i~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 313
>PRK10536 hypothetical protein; Provisional
Probab=56.38 E-value=8.1 Score=41.31 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=26.2
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.|.|-.+ .+-+..|..+... + .+ +..|+..|++||||||..
T Consensus 51 ~~~~~~i-~p~n~~Q~~~l~a-----l---~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPI-LARNEAQAHYLKA-----I---ES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccc-cCCCHHHHHHHHH-----H---hc--CCeEEEECCCCCCHHHHH
Confidence 3555555 5555555544331 2 22 348899999999999985
No 314
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=56.11 E-value=3.8e+02 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFELCH 522 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL~~ 522 (745)
...+++..++.++..|-++...|.+-|..
T Consensus 161 ~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 161 TLLEEIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35567888888888999999999888844
No 315
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=56.09 E-value=8.5 Score=40.78 Aligned_cols=45 Identities=20% Similarity=0.439 Sum_probs=28.5
Q ss_pred EEeccccCCCcchHHHHHHHHHHhhhhhcccCcce-EEEeeCCCCCCCcccc
Q 004553 93 FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKC-TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 93 F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~-tIfaYGqTGSGKTyTm 143 (745)
..+|.. .+-+.+.+.+.+.+ ..++.|..+ -++-||..|||||.++
T Consensus 24 ~~l~~L-~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 24 IRLDDL-IGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCHHHh-cCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHH
Confidence 445555 55555555555443 345666654 3566999999999876
No 316
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.04 E-value=5.9 Score=42.81 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.5
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
...++-||++|+|||+.+.
T Consensus 43 ~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3566779999999999874
No 317
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=56.03 E-value=1.7e+02 Score=35.65 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.2
Q ss_pred hHHHHHHHHhcccc
Q 004553 152 IVYKSLKDILGDES 165 (745)
Q Consensus 152 IIpral~~LF~~i~ 165 (745)
|..+.+++|...+.
T Consensus 428 iYSkLFD~lV~~iN 441 (1259)
T KOG0163|consen 428 IYSKLFDWLVGRIN 441 (1259)
T ss_pred HHHHHHHHHHHHhh
Confidence 44555555555543
No 318
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.82 E-value=5.4e+02 Score=32.78 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=6.3
Q ss_pred EEEEEEee
Q 004553 737 VEVYAAFT 744 (745)
Q Consensus 737 ~~~~~~~~ 744 (745)
+||.||+-
T Consensus 1066 LEvkV~~G 1073 (1174)
T KOG0933|consen 1066 LEVKVKFG 1073 (1174)
T ss_pred eEEEEEeC
Confidence 88888873
No 319
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.74 E-value=1.9e+02 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~e 519 (745)
.+...+..++...+.+...+.++..+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566555555543
No 320
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.73 E-value=6.2 Score=39.41 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.6
Q ss_pred cccCcceEEEeeCCCCCCCccc
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyT 142 (745)
++.|.| ++..++||+|||.+
T Consensus 33 ~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 33 LLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HhcCCc--EEEECCCCCcHHHH
Confidence 344777 47779999999988
No 321
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.69 E-value=3.2e+02 Score=32.57 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
.+..++..+..+..++........+....+..+.+...+++..+-
T Consensus 109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555555443
No 322
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.66 E-value=5.4 Score=44.84 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.9
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
...++-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567779999999999974
No 323
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.52 E-value=37 Score=38.42 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHhhh-hhcccCcce---EEEeeCCCCCCCc
Q 004553 110 YKKFVESRI-SGVKLGEKC---TIMMYGPTGSGKS 140 (745)
Q Consensus 110 y~~~v~plV-~~vl~G~N~---tIfaYGqTGSGKT 140 (745)
-+.+|.|+. -.+|+|.-- .|+.+|+.|||||
T Consensus 225 ~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 225 KEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred HHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 345555554 456676653 5888999999997
No 324
>PRK04406 hypothetical protein; Provisional
Probab=55.47 E-value=83 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 472 QLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 472 ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+||.++...+..++ .+.+.+..++.++..|++++..|.+.|
T Consensus 15 ~LE~~lAfQE~tIe--------~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 15 DLECQLAFQEQTIE--------ELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 344457788888888888888887777
No 325
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.40 E-value=1.1e+02 Score=35.85 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc----cccccCc-chhhhhhhcccccCCCCccccccccCCC
Q 004553 496 EERILQQQQEVEMLRRRLEEIEFELCHSRDRDVR----SSKDLDG-SSFARRLMGIYADEDPGMVKSMDLDMGD 564 (745)
Q Consensus 496 ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~----~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 564 (745)
..++.++..+++++++++..|+++|......... ..-.++. ......+...|.-.+.+---.-|+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~v~v~l~~~~~g~~~l~lsY~v~~a~W~P~Ydlrl~~ 217 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNALLTGKSQRSHTVLVRLEAPEDAEAELNLTYQVGNASWTPSYDARLDT 217 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEeccCCceEEEEEEEEeCCCcEeeeeEEEecC
Confidence 3445566666677777777777777444332211 1112222 2333456667777777665555554443
No 326
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=55.39 E-value=2.7e+02 Score=29.25 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLL 430 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~ 430 (745)
+..+.+.|.+|...+....+.+.+....|+
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq 65 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQ 65 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 327
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.28 E-value=1.8e+02 Score=34.67 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=14.9
Q ss_pred hHHHHHhhcccchhhhcccCCCCCCCCCCc
Q 004553 685 RIQNIFTLCGNNRELSQHTRTPTVSSVPMV 714 (745)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (745)
=|-|||-=- .|--|+.+ ++-+|+.|-|
T Consensus 491 glrnifgKl--rRSqS~~f-~~ddqs~peF 517 (861)
T KOG1899|consen 491 GLRNIFGKL--RRSQSQEF-TADDQSEPEF 517 (861)
T ss_pred HHHHHHHHh--hhcccCCc-Ccccccchhh
Confidence 488999421 23333333 3445777777
No 328
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=55.22 E-value=2.9e+02 Score=33.51 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 004553 498 RILQQQQEVEMLRRRLEEIEFELCHSRDRD 527 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~ 527 (745)
.+..+...+-.++..+.+|+..+...+..+
T Consensus 531 e~~rq~~~~~~sr~~~~~le~~~~a~qat~ 560 (961)
T KOG4673|consen 531 ELTRQKDYYSNSRALAAALEAQALAEQATN 560 (961)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 334445555666777777777764444444
No 329
>PTZ00424 helicase 45; Provisional
Probab=55.21 E-value=5.2 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.4
Q ss_pred hhcccCcceEEEeeCCCCCCCcccc
Q 004553 119 SGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 119 ~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
..+++|.|. +..++||||||.+.
T Consensus 60 ~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 60 KPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHhCCCCE--EEECCCCChHHHHH
Confidence 345678875 46789999999875
No 330
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=55.17 E-value=6.8 Score=50.16 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=19.8
Q ss_pred hhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 116 SRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 116 plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
.+++.+..|...+++. .+||||||+||.+
T Consensus 424 ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 3344444566554444 8999999999876
No 331
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.05 E-value=1.5e+02 Score=33.85 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 458 INVKVTERTQILKHQL---EKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLR 510 (745)
Q Consensus 458 ~~~k~~e~~~~l~~el---e~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr 510 (745)
|+..+++-++....|+ ...+...+++++-......+.+.+-|+..|..+.+|+
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 3333344444443344455577888899999888888
No 332
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.99 E-value=7 Score=43.25 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.6
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
+.|+..|.||||||.+|
T Consensus 161 ~nili~G~tgSGKTTll 177 (332)
T PRK13900 161 KNIIISGGTSTGKTTFT 177 (332)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45777899999999987
No 333
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=54.89 E-value=4.3e+02 Score=31.44 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004553 427 DKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 427 ~~l~~~~ee~~~Lr~~l 443 (745)
.+..++.-|..-||.+|
T Consensus 329 akVDeL~~E~~vLrgEl 345 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGEL 345 (832)
T ss_pred HHHHhhccHHHHHhhHH
Confidence 33333333333444444
No 334
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=54.88 E-value=2.9e+02 Score=29.43 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 004553 502 QQQEVEMLRRRLEEIEFELCHSR 524 (745)
Q Consensus 502 ~q~e~e~Lr~~l~~Le~eL~~s~ 524 (745)
+-.++.+|+.+.-+|..||+-..
T Consensus 162 llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888884433
No 335
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.88 E-value=62 Score=27.37 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 406 QFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 406 ~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
+.|..|+..+...+.-++++...+.+...++..|+.++..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 336
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.70 E-value=8.9 Score=43.35 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=15.0
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
..-|.-.|+||.|||.|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 4455557999999999973
No 337
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.63 E-value=4.1 Score=49.68 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
+...++..+..|+.++......+.++...+..++.++..|+++..
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~ 284 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENE 284 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444455455555555555555444
No 338
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=2.6e+02 Score=32.98 Aligned_cols=12 Identities=17% Similarity=-0.119 Sum_probs=6.9
Q ss_pred CcceeEEEeeee
Q 004553 260 RSHCMIILDVPT 271 (745)
Q Consensus 260 RSH~If~i~v~~ 271 (745)
++|.++.|..-|
T Consensus 150 LsssMnsIKTFw 161 (654)
T KOG4809|consen 150 LSSSMNSIKTFW 161 (654)
T ss_pred hcCccccccccc
Confidence 466666665443
No 339
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.43 E-value=2e+02 Score=29.89 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 497 ERILQQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 497 e~i~~~q~e~e~Lr~~l~~Le 517 (745)
..+..++.++..|+++..+++
T Consensus 196 ~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 196 VACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555554444443
No 340
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.43 E-value=6.3 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=17.1
Q ss_pred hcccCcceEEEeeCCCCCCCcccc
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.+++|.| ++..++||||||.+.
T Consensus 37 ~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 37 AILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHhcCCC--EEEECCCCCcHHHHH
Confidence 3557877 677889999999764
No 341
>PF14182 YgaB: YgaB-like protein
Probab=54.42 E-value=1.4e+02 Score=26.16 Aligned_cols=43 Identities=33% Similarity=0.616 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 474 EKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 474 e~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~e 519 (745)
...++.|++.-.++.++++ +..+..++.|+..++.++.++.+-
T Consensus 20 QsElERCqeIE~eL~~l~~---ea~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 20 QSELERCQEIEKELKELER---EAELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555555432 344566677777777777766643
No 342
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.39 E-value=4.4 Score=38.13 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=13.3
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 343
>PRK13764 ATPase; Provisional
Probab=54.24 E-value=5.2 Score=47.66 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCCcccccC
Q 004553 126 KCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G 145 (745)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45589999999999999843
No 344
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=53.98 E-value=5.9 Score=40.09 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=14.3
Q ss_pred cceEEEeeCCCCCCCcccc
Q 004553 125 EKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm 143 (745)
.-..+|..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3457899999999998875
No 345
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.88 E-value=3.3e+02 Score=33.78 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004553 503 QQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 503 q~e~e~Lr~~l~~Le~eL 520 (745)
+.|++.|..++..|+.+|
T Consensus 672 e~E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEEL 689 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 346
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.87 E-value=45 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
+++.+..++.++......+.+.+..|..++..+..|+.++
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555444444443
No 347
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=53.84 E-value=1.7e+02 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 493 RRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 493 ~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+|+.++..++.++..|.++++.|..+|
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887776
No 348
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.82 E-value=1.6e+02 Score=36.22 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 399 SKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 399 ~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
..+..|+.++..++.+.........+..-.+..++.++..|++++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 345566666655555544444433333344445555555555443
No 349
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=53.81 E-value=5.1 Score=36.49 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=13.0
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999875
No 350
>PRK02119 hypothetical protein; Provisional
Probab=53.74 E-value=81 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 402 SAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 402 ~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
..+++.|..|+..+...+.-++++...+.+...++..|+.++.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444444444443
No 351
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.65 E-value=2.2e+02 Score=32.53 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
+..++..++..+..|....... ...+...+++++..+-.+|-++|.
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk 200 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLE 200 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666555544432 223334444444444444444444
No 352
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=53.52 E-value=3.4e+02 Score=29.73 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+++++.++|.++--|++++++....-
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998877653
No 353
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=53.34 E-value=2.1e+02 Score=35.22 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=5.8
Q ss_pred CchhHHhhhH
Q 004553 677 DTESSRRLRI 686 (745)
Q Consensus 677 ~~~~~r~~~~ 686 (745)
+.++.||.||
T Consensus 1366 enaaedRari 1375 (1424)
T KOG4572|consen 1366 ENAAEDRARI 1375 (1424)
T ss_pred hhHHHHHHHH
Confidence 4456666665
No 354
>PRK11281 hypothetical protein; Provisional
Probab=53.26 E-value=6.3e+02 Score=32.84 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHH
Q 004553 358 KEIHKTICTLEYG 370 (745)
Q Consensus 358 ~~~~ETlsTLrfa 370 (745)
.++++|+..|+=+
T Consensus 63 ~~l~~tL~~L~qi 75 (1113)
T PRK11281 63 QDLEQTLALLDKI 75 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666555533
No 355
>PLN03025 replication factor C subunit; Provisional
Probab=53.24 E-value=7.7 Score=42.37 Aligned_cols=18 Identities=28% Similarity=0.862 Sum_probs=14.7
Q ss_pred EEEeeCCCCCCCcccccC
Q 004553 128 TIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~G 145 (745)
-++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356699999999999754
No 356
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.15 E-value=4.1e+02 Score=32.64 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 004553 499 ILQQQQEVEMLR 510 (745)
Q Consensus 499 i~~~q~e~e~Lr 510 (745)
+.+++.+.+..+
T Consensus 378 ~~~L~Re~~~~~ 389 (754)
T TIGR01005 378 LDALQRDAAAKR 389 (754)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 357
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.67 E-value=2.6e+02 Score=28.15 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=27.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004553 395 VILGSKISAMDQFIYKLQMENKLREKERNEAHDK--LLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 395 ~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~--l~~~~ee~~~Lr~~l~ 444 (745)
..|..+|.+|...+..|+......+.++..+... +.+++++++.|+.++.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~ 133 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVA 133 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 4456667777777777766666555555444332 2244444444444443
No 358
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.62 E-value=3.8e+02 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=12.0
Q ss_pred CCcccccCCCCCCchHHHHHHHHhcccc
Q 004553 138 GKSHTMFGCAKQPGIVYKSLKDILGDES 165 (745)
Q Consensus 138 GKTyTm~G~~~~~GIIpral~~LF~~i~ 165 (745)
|+.|-..+.-++|. -++..|+..+.
T Consensus 57 g~~f~~p~e~DDPn---~~~~~Il~~lr 81 (359)
T PF10498_consen 57 GRKFEQPQEYDDPN---ATISNILDELR 81 (359)
T ss_pred CCCCCCCcccCCHH---HHHHHHHHHHH
Confidence 55666555445554 23444444443
No 359
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.53 E-value=3.4e+02 Score=35.13 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=13.2
Q ss_pred cCcceEEEeeCCCCCCCcccc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm 143 (745)
.|+=|-|+..-..+|||-|.|
T Consensus 85 rGaFGEV~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 85 RGAFGEVALVRHKSTEKVYAM 105 (1317)
T ss_pred ccccceeEEEEeeccccchhH
Confidence 355555666666666676666
No 360
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=52.42 E-value=34 Score=38.20 Aligned_cols=38 Identities=37% Similarity=0.720 Sum_probs=30.0
Q ss_pred ceEEEeeCCCCCCCc---------------ccccCCC--CCC-chHHHHHHHHhcc
Q 004553 126 KCTIMMYGPTGSGKS---------------HTMFGCA--KQP-GIVYKSLKDILGD 163 (745)
Q Consensus 126 N~tIfaYGqTGSGKT---------------yTm~G~~--~~~-GIIpral~~LF~~ 163 (745)
.-.++-.|++|+||| ||+.|++ ++| +|||.-+...|..
T Consensus 88 krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 88 KRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFED 143 (358)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHHH
Confidence 346778899999997 7888887 444 8999888887743
No 361
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.36 E-value=3.1e+02 Score=29.03 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKK 432 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~ 432 (745)
|...+..++.+......++.+.+.....|
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~L 38 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEEL 38 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333333333
No 362
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=51.94 E-value=12 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=26.8
Q ss_pred HHHHhhhhhcccCcceEEEeeCCCCCCCcccccC
Q 004553 112 KFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 112 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
..+..+++.+-+|.+-.+++. .||||||||-+-
T Consensus 172 ~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 172 IAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 456777888889999976666 799999999865
No 363
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=51.90 E-value=3.2e+02 Score=32.49 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004553 498 RILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.+++.-.+..+.++.++..+|
T Consensus 518 el~sl~~~~~~~~~r~~~~~~~l 540 (607)
T KOG0240|consen 518 ELQSLQEPSEHQSKRITELLSEL 540 (607)
T ss_pred HHHhhhhcccchhHHHHHHHHHH
Confidence 33444444444444444444444
No 364
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=51.76 E-value=4.1e+02 Score=30.15 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHhC
Q 004553 307 GNIALKRVVESIAN 320 (745)
Q Consensus 307 SL~aLg~vI~aL~~ 320 (745)
+...||.||..+.+
T Consensus 8 ~vlvLgGVIA~~gD 21 (499)
T COG4372 8 FVLVLGGVIAYAGD 21 (499)
T ss_pred HHHHHHhHHHHHhh
Confidence 46788999998865
No 365
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.73 E-value=2.6e+02 Score=27.93 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 423 NEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 423 ~~~~~~l~~~~ee~~~Lr~~l 443 (745)
..+..+..+++.++..|+++|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544444
No 366
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.66 E-value=4.3e+02 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004553 501 QQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 501 ~~q~e~e~Lr~~l~~Le~e 519 (745)
..|.-++.|+++++.+.+.
T Consensus 371 atqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 371 ATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 367
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.53 E-value=2.9e+02 Score=30.21 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.1
Q ss_pred cccCcceEEEeeCCCCCCCcccc
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+-+|+.--|++.|.||.|||..|
T Consensus 37 v~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 37 VSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HhcCceEEEEEeccCCccHHHHH
Confidence 45799999999999999999765
No 368
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=51.44 E-value=6.1 Score=41.82 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.6
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45778999999999986
No 369
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=51.18 E-value=8.9 Score=46.44 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHhhhhhccc-----CcceEEEeeCCCCCCCcccccC
Q 004553 114 VESRISGVKL-----GEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 114 v~plV~~vl~-----G~N~tIfaYGqTGSGKTyTm~G 145 (745)
+..+++.+.. |.+..|+.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 4445555544 345555544 899999999965
No 370
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.96 E-value=7.4 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.5
Q ss_pred hcccCcceEEEeeCCCCCCCcccc
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.+++|.| +++.++||||||.+.
T Consensus 34 ~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 34 PALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHhCCCC--EEEECCCCChHHHHH
Confidence 3556777 788899999999874
No 371
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=50.91 E-value=6.4 Score=44.08 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=13.5
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578899999999997
No 372
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=50.68 E-value=10 Score=40.62 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 110 YKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 110 y~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
|..++..++.. +--++-+|++|||||.++
T Consensus 22 ~~~ll~~l~~~-----~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 22 YSYLLDLLLSN-----GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHHC-----TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHc-----CCcEEEECCCCCchhHHH
Confidence 45555555542 556688999999999875
No 373
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.62 E-value=95 Score=26.24 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
..+|..|+.++..+...++.+.....+.+.+|.+++.++..|..++..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666665555665666666666677777777777777766543
No 374
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.52 E-value=1.2e+02 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLRE 419 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~ 419 (745)
|..+|...-+.|.-|+++++..+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 375
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.47 E-value=12 Score=40.41 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhcccCcceEEEeeCCCCCCCccccc
Q 004553 110 YKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 110 y~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
+-.++.|++. .+.--+..|-.||+|++|||.++.
T Consensus 178 ~~afa~pLL~-~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 178 CAAFAAPLLS-LLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHHHH-HhCCCceEEEEEeCCCCCHHHHHH
Confidence 3455666663 455666788889999999998763
No 376
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.19 E-value=4.5e+02 Score=33.31 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 004553 363 TICTLEYGAK 372 (745)
Q Consensus 363 TlsTLrfa~r 372 (745)
-++-|+|..+
T Consensus 600 li~kl~y~p~ 609 (1200)
T KOG0964|consen 600 LISKLRYEPQ 609 (1200)
T ss_pred hHHHhCcchh
Confidence 3455555433
No 377
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.88 E-value=2.3e+02 Score=26.85 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
.++.++.++...|.-|-.+|+
T Consensus 109 ~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555544
No 378
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=49.80 E-value=2.7e+02 Score=27.57 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 421 ERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 421 e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
...++.......++++...+.+.+
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~ 79 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEID 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444433
No 379
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=49.53 E-value=6.2 Score=43.07 Aligned_cols=16 Identities=56% Similarity=0.906 Sum_probs=13.3
Q ss_pred EEeeCCCCCCCccccc
Q 004553 129 IMMYGPTGSGKSHTMF 144 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~ 144 (745)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4559999999999764
No 380
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=49.35 E-value=2.6e+02 Score=27.30 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 479 ECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 479 e~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.....+++++.....+..+--.+.+...+.|+.++.+|+.+|
T Consensus 104 ~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~l 145 (145)
T PF14942_consen 104 QRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKKL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333344444433222333333444556777888888877654
No 381
>PRK04406 hypothetical protein; Provisional
Probab=49.34 E-value=1.2e+02 Score=26.36 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
.+++.|..|+..+...+.-++++...+.+...++..|+.++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555545544444443
No 382
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.26 E-value=8.1 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.0
Q ss_pred hcccCcceEEEeeCCCCCCCcccc
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.++.|.|. ++.++||||||.+.
T Consensus 41 ~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 41 LTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHhCCCcE--EEECCCCchHHHHH
Confidence 45678774 66779999999874
No 383
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=49.07 E-value=9.5 Score=46.33 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.5
Q ss_pred cCcceEEEeeCCCCCCCcccc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm 143 (745)
.+.|-||+..|.+|||||.|+
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 588999999999999999985
No 384
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.96 E-value=2.4e+02 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 416 KLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 416 ~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
..++..+.+.+..|...+.||.+|+.+|..+++
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566777888888888899999998876654
No 385
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=48.90 E-value=20 Score=24.09 Aligned_cols=16 Identities=38% Similarity=0.682 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 004553 505 EVEMLRRRLEEIEFEL 520 (745)
Q Consensus 505 e~e~Lr~~l~~Le~eL 520 (745)
|+++||.+|.+||++|
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6788999999999988
No 386
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.83 E-value=6.1e+02 Score=31.32 Aligned_cols=125 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHH----------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH----------HHHHHH
Q 004553 396 ILGSKISAMDQFIYK----------LQMENKLREKERNE-----------AHDKLLKKEEEVSQ----------LRAKLQ 444 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~----------L~~e~~~~~~e~~~-----------~~~~l~~~~ee~~~----------Lr~~l~ 444 (745)
.|...|..|++++.. |+..+..+..+... +..++.++.+|+++ |+.+++
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Q ss_pred HHHhhcC-------CchHHHHHHHHHHHHHH------HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 004553 445 LVEEKGS-------GASEQEINVKVTERTQI------LKHQLEKKLE---------------ECQRMAEEFVEIERRRME 496 (745)
Q Consensus 445 ~~e~~~~-------~~~e~e~~~k~~e~~~~------l~~ele~~~e---------------e~~~~~e~~~e~e~~~~e 496 (745)
.+.+... ......+...++++... ++++++..+. .++++++.+.+.-..+++
T Consensus 539 ~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie 618 (762)
T PLN03229 539 MLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELA 618 (762)
T ss_pred HHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH----------------HHHHHHHHHHHHh
Q 004553 497 ERILQQQQEVE----------------MLRRRLEEIEFEL 520 (745)
Q Consensus 497 e~i~~~q~e~e----------------~Lr~~l~~Le~eL 520 (745)
.-+...--++. .++++|+.|+.++
T Consensus 619 ~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eI 658 (762)
T PLN03229 619 GVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEI 658 (762)
T ss_pred HHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHH
No 387
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.71 E-value=2.8e+02 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 004553 498 RILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+..++..+..+++++..++..+
T Consensus 153 ~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666666655544
No 388
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=48.62 E-value=11 Score=43.32 Aligned_cols=27 Identities=4% Similarity=0.327 Sum_probs=19.3
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 004553 344 KSKILMVLCASPDPKEIHKTICTLEYGAKAK 374 (745)
Q Consensus 344 nskt~mI~~isP~~~~~~ETlsTLrfa~rak 374 (745)
..+..+|||++.... ++..|.+|-+=|
T Consensus 323 P~Nl~IIgTMNt~Dr----s~~~lD~AlrRR 349 (459)
T PRK11331 323 PENVYIIGLMNTADR----SLAVVDYALRRR 349 (459)
T ss_pred CCCeEEEEecCcccc----chhhccHHHHhh
Confidence 578999999998764 445666665544
No 389
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.55 E-value=2.1e+02 Score=25.85 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+..++..++..+..+..-+..++.-|
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777777777666
No 390
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=48.40 E-value=19 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCCcccccC
Q 004553 123 LGEKCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm~G 145 (745)
+|-.+|+..-|..|||||+|+.+
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 419 QGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred CCCceeEEEecCCCCCceehHHH
Confidence 47777999999999999999754
No 391
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.26 E-value=6.2e+02 Score=31.29 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
|+.++.+.....+..+...+++.+.+..+.+|..+++..+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444555555555555433
No 392
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.17 E-value=3.6e+02 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 004553 498 RILQQQQEVEMLRRR 512 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~ 512 (745)
++.-+..++++++..
T Consensus 89 ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 89 EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555555
No 393
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.87 E-value=61 Score=37.53 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAK 442 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~ 442 (745)
+|+.++..|+.++++..+...+.+.+|.+++.++..|+.+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333334444444444444444433
No 394
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.86 E-value=1.6e+02 Score=28.99 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEA 425 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~ 425 (745)
++..|...|..|+.++.....+...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSL 98 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555544444433333
No 395
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.79 E-value=4.8e+02 Score=33.13 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=19.6
Q ss_pred cccccCCCCCCCCchhHHhhhHHHHH
Q 004553 665 TGLLASSPQKPEDTESSRRLRIQNIF 690 (745)
Q Consensus 665 ~~~~~~~~~~~~~~~~~r~~~~~~~~ 690 (745)
++.+|+.|-+..+...+=-.+||||-
T Consensus 553 ~~~ih~IPvs~~~~~e~~~~~~~~~r 578 (1072)
T KOG0979|consen 553 VSKIHRIPVSKREVEEAIVEVLQNIR 578 (1072)
T ss_pred hccccccccCcccccHHHHHHHhccc
Confidence 45677788887777777778888887
No 396
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.60 E-value=4.8e+02 Score=29.82 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=13.0
Q ss_pred HHHHHHHHHHH-HHHHHH--hhcccCcccccc
Q 004553 503 QQEVEMLRRRL-EEIEFE--LCHSRDRDVRSS 531 (745)
Q Consensus 503 q~e~e~Lr~~l-~~Le~e--L~~s~~~~~~~~ 531 (745)
..++++|++++ .++++. ||+-.+...+..
T Consensus 291 reen~rlQrkL~~e~erRealcr~lsEsessl 322 (552)
T KOG2129|consen 291 REENERLQRKLINELERREALCRMLSESESSL 322 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34444444443 345544 555444443333
No 397
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=47.59 E-value=9.8 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=17.6
Q ss_pred hcccCcceEEEeeCCCCCCCcccc
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.+++|.| |++..+||||||.+.
T Consensus 34 ~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 34 AVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHhCCCC--EEEECCCCCcHHHHH
Confidence 4567877 577789999999885
No 398
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.91 E-value=8.7 Score=42.19 Aligned_cols=17 Identities=53% Similarity=0.907 Sum_probs=13.6
Q ss_pred ceEEEeeCCCCCCCccc
Q 004553 126 KCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyT 142 (745)
.+-|+..|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578889999999964
No 399
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.79 E-value=72 Score=33.93 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 004553 429 LLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEE----------------------------- 479 (745)
Q Consensus 429 l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee----------------------------- 479 (745)
|+.++.++..+.++++...+. ...|+..|......
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L----------------~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~ 64 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKEL----------------NAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGS 64 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCC
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccc
Q 004553 480 -----------CQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFELCHSRDRDVRS 530 (745)
Q Consensus 480 -----------~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~~ 530 (745)
-..-+=-++.-.+.+.+.+..+++.|+..++.++..|+.|+...+.+|.++
T Consensus 65 ~sp~ss~~~~~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 65 LSPTSSIIGGGGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred CCCCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 400
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.65 E-value=12 Score=40.14 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=15.7
Q ss_pred CcceEEEeeCCCCCCCcccc
Q 004553 124 GEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm 143 (745)
|...-++-||+.|+|||+++
T Consensus 36 ~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 36 KNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44444688999999999876
No 401
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=46.54 E-value=1e+02 Score=34.63 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=12.0
Q ss_pred HHHHHH-HHHHHHHHhhcccC
Q 004553 506 VEMLRR-RLEEIEFELCHSRD 525 (745)
Q Consensus 506 ~e~Lr~-~l~~Le~eL~~s~~ 525 (745)
+++++. --+++++||..+++
T Consensus 387 IEAMKnAhrEEmeRELeKsqS 407 (593)
T KOG4807|consen 387 IEAMKNAHREEMERELEKSQS 407 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 444433 34678888866653
No 402
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.48 E-value=4.7e+02 Score=32.49 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 420 KERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 420 ~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
..++..+.+|...+..+..|+.+|.
T Consensus 617 d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 617 DQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555554
No 403
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.43 E-value=8 Score=43.08 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=10.3
Q ss_pred CCCCCCCcccccccc
Q 004553 653 LADGNIPSLNLTTGL 667 (745)
Q Consensus 653 ~~~~~~~~~~~~~~~ 667 (745)
-.+...++|||+-++
T Consensus 302 v~dN~~p~i~f~~~~ 316 (514)
T KOG3130|consen 302 VGDNSIPTIYFSHTV 316 (514)
T ss_pred cCCCcCccccccccc
Confidence 456778889987433
No 404
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=46.40 E-value=28 Score=35.29 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=13.7
Q ss_pred CchhHHhhhHH------HHHhhcccc
Q 004553 677 DTESSRRLRIQ------NIFTLCGNN 696 (745)
Q Consensus 677 ~~~~~r~~~~~------~~~~~~~~~ 696 (745)
++.+.|.||.. -||--||-+
T Consensus 117 ~~~swr~lR~~I~~tLyaifqqsrG~ 142 (187)
T PF11081_consen 117 EYRSWRELRNRIFPTLYAIFQQSRGN 142 (187)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56677888753 356668877
No 405
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.19 E-value=9.5 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.0
Q ss_pred ccCcceEEEeeCCCCCCCcccccCC
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMFGC 146 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~G~ 146 (745)
..|.+ ++|++|||||||+...++
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHH
Confidence 34444 499999999999998763
No 406
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.02 E-value=4.2e+02 Score=31.28 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=8.7
Q ss_pred HhhhHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYK 410 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~ 410 (745)
.|..+|..++..+..
T Consensus 176 ~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 176 ELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666655543
No 407
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.02 E-value=53 Score=36.84 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=18.9
Q ss_pred ccCcceEEEeeCCCCCCCccc
Q 004553 122 KLGEKCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyT 142 (745)
-.|+.-+|++.|.+|+|||.-
T Consensus 17 KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred hcCCceEEEEecCCCccHHHH
Confidence 479999999999999999864
No 408
>PRK00295 hypothetical protein; Provisional
Probab=46.01 E-value=1.5e+02 Score=25.19 Aligned_cols=44 Identities=5% Similarity=-0.023 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
|.+|+.++..+...++.+.....+.+.+|..++.++..|..++.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333333333333344444444444444433
No 409
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=45.96 E-value=2.1e+02 Score=25.12 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
.++.+...+..+.........+.+.++.....|+..++..+-
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~ 49 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVY 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555443
No 410
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.91 E-value=4.1e+02 Score=33.66 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=16.0
Q ss_pred eCCCCCCCcccccCCCCCCchHHHHHHHHhccc
Q 004553 132 YGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDE 164 (745)
Q Consensus 132 YGqTGSGKTyTm~G~~~~~GIIpral~~LF~~i 164 (745)
.|..||||+--... |.-.|.+.|.++
T Consensus 31 VGrNGSGKSNFF~A-------IrFVLSDey~hL 56 (1200)
T KOG0964|consen 31 VGRNGSGKSNFFHA-------IRFVLSDEYSHL 56 (1200)
T ss_pred ecCCCCCchhhHHH-------hhhhcccchhhc
Confidence 49999999865432 333445555554
No 411
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.86 E-value=1.3e+02 Score=25.79 Aligned_cols=11 Identities=45% Similarity=0.356 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 004553 406 QFIYKLQMENK 416 (745)
Q Consensus 406 ~~i~~L~~e~~ 416 (745)
+.|.-|+++++
T Consensus 18 dTI~LLQmEie 28 (79)
T COG3074 18 DTITLLQMEIE 28 (79)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 412
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.78 E-value=3.6e+02 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
.+..++.++..++.++........+-.-.+..++.++..++.++
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 34556666666665555544444444444555555555555544
No 413
>PRK04195 replication factor C large subunit; Provisional
Probab=45.70 E-value=12 Score=43.56 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=20.7
Q ss_pred HHhhhhhcccCc-ceEEEeeCCCCCCCcccc
Q 004553 114 VESRISGVKLGE-KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 114 v~plV~~vl~G~-N~tIfaYGqTGSGKTyTm 143 (745)
+..++.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444554 456788999999999886
No 414
>PRK01156 chromosome segregation protein; Provisional
Probab=45.69 E-value=7.1e+02 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4466899999998763
No 415
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=45.64 E-value=8.3 Score=36.27 Aligned_cols=16 Identities=50% Similarity=1.041 Sum_probs=13.4
Q ss_pred EEeeCCCCCCCccccc
Q 004553 129 IMMYGPTGSGKSHTMF 144 (745)
Q Consensus 129 IfaYGqTGSGKTyTm~ 144 (745)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4669999999999864
No 416
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=45.47 E-value=8.7 Score=40.06 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCCcccccC
Q 004553 126 KCTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~G 145 (745)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45689999999999998744
No 417
>PF05729 NACHT: NACHT domain
Probab=45.22 E-value=9.9 Score=36.08 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=14.0
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
.|+-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999977
No 418
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.08 E-value=2.2e+02 Score=26.42 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 498 RILQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~ 518 (745)
+-..++.||+.||+++.+++.
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455566677777777777665
No 419
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=45.01 E-value=10 Score=40.66 Aligned_cols=17 Identities=35% Similarity=0.854 Sum_probs=14.0
Q ss_pred EEEeeCCCCCCCccccc
Q 004553 128 TIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm~ 144 (745)
.++-||+.|+|||+...
T Consensus 32 ~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAH 48 (305)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46779999999998763
No 420
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=44.87 E-value=16 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 103 EEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 103 ~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
-..|.++-+. +.+.+..|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 4556655444 3333445654 466689999999986
No 421
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=44.87 E-value=16 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 103 EEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 103 ~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
-..|.++-+. +.+.+..|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 4556655444 3333445654 466689999999986
No 422
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=44.75 E-value=4.1e+02 Score=30.05 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 004553 394 AVILGSKISAMDQFIYK--------LQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTER 465 (745)
Q Consensus 394 ~~~l~~~i~~l~~~i~~--------L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~ 465 (745)
...+...+..|+..+.+ |+.|.=..++-.+.+....+-.+.|+..|+++|..++++..=+..+...
T Consensus 276 q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaR------ 349 (455)
T KOG3850|consen 276 QALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERAR------ 349 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 466 TQILKHQLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLR 510 (745)
Q Consensus 466 ~~~l~~ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr 510 (745)
++++.+|.|+..+-.+. +.++++.+..++
T Consensus 350 ------dIqEalEscqtrisKlE----------l~qq~qqv~Q~e 378 (455)
T KOG3850|consen 350 ------DIQEALESCQTRISKLE----------LQQQQQQVVQLE 378 (455)
T ss_pred ------HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
No 423
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=44.74 E-value=12 Score=37.73 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=15.2
Q ss_pred ceEEEeeCCCCCCCcccc
Q 004553 126 KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm 143 (745)
...+.-||.+|||||.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567788999999999764
No 424
>PF15556 Zwint: ZW10 interactor
Probab=44.28 E-value=3.8e+02 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEE 448 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~ 448 (745)
.+.++++.++.-+-...-...+++..-..+++-+.+|.++.+...+
T Consensus 74 tYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~e 119 (252)
T PF15556_consen 74 TYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAME 119 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444455566666666677777777766654443
No 425
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.28 E-value=5e+02 Score=29.07 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 408 IYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 408 i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
+...+.+......+.+...-+|+.+.-|...|+.++....
T Consensus 14 ~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~ 53 (355)
T PF09766_consen 14 IKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCL 53 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444555555666667777778888888888877776443
No 426
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.13 E-value=3.8e+02 Score=27.69 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 414 ENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 414 e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
++.++...+.+.+.++.....+|-.|+.+|....
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR 44 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555666666666666667777776665443
No 427
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.12 E-value=2.9e+02 Score=26.22 Aligned_cols=99 Identities=24% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 004553 414 ENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQIL--KHQLEKKLEECQRMAEEFVEIE 491 (745)
Q Consensus 414 e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l--~~ele~~~ee~~~~~e~~~e~e 491 (745)
++...-.+...++.++.....+..++.++|+..+........-.-...+....-.+ +...++..+++....+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E------ 80 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE------ 80 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 492 RRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 492 ~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.++-++..++...+.++.++++|..+|
T Consensus 81 --~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 81 --TLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=11 Score=41.40 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCceeEEeccccCCCcchHHHHHHHHHHhhhhhccc---Ccce--EEEeeCCCCCCCccc
Q 004553 88 FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKL---GEKC--TIMMYGPTGSGKSHT 142 (745)
Q Consensus 88 ~~~~~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~---G~N~--tIfaYGqTGSGKTyT 142 (745)
.+.+.++|++| -+-...--++-+.+..|+++..+- |... .+.-||+.|+|||+-
T Consensus 124 e~~~~~s~~~~-ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 124 EDPRNISFENV-GGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred cCccccCHHHh-CChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 35678899998 554444455666777888876542 4432 467799999999975
No 429
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.08 E-value=4.2e+02 Score=32.85 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004553 496 EERILQQQQEVEMLRRRLEEIEFELCH 522 (745)
Q Consensus 496 ee~i~~~q~e~e~Lr~~l~~Le~eL~~ 522 (745)
++++.++-.+...+..++.++..++.+
T Consensus 791 qeqv~El~~~l~e~~~~l~~~q~e~~~ 817 (970)
T KOG0946|consen 791 QEQVIELLKNLSEESTRLQELQSELTQ 817 (970)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 455555544455555555555555533
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.05 E-value=20 Score=41.17 Aligned_cols=20 Identities=45% Similarity=0.572 Sum_probs=16.5
Q ss_pred cceEEEeeCCCCCCCccccc
Q 004553 125 EKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~ 144 (745)
....|+-+|.+|+|||+|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 34578889999999999963
No 431
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.03 E-value=1.4e+02 Score=32.00 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 406 QFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQL 445 (745)
Q Consensus 406 ~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~ 445 (745)
+.+..|............+++.+|..++.++.+||.+++.
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444444455567777888888888888877653
No 432
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=43.94 E-value=14 Score=45.12 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhh-hccc--C--cceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRIS-GVKL--G--EKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~-~vl~--G--~N~tIfaYGqTGSGKTyTm 143 (745)
.++||.| .+.+..-+.+.+.+..|+-. .++. | ....|+-||++|||||+.+
T Consensus 174 ~~~~~di-~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDI-GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHh-cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 4667776 44444444444433333221 1111 1 1235888999999999765
No 433
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=43.94 E-value=16 Score=40.03 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.3
Q ss_pred ccCcceEEEeeCCCCCCCccccc
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~ 144 (745)
....+.-++-||..|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 35667789999999999999974
No 434
>PRK00106 hypothetical protein; Provisional
Probab=43.83 E-value=6.3e+02 Score=30.07 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.8
Q ss_pred cccCCCCc
Q 004553 547 YADEDPGM 554 (745)
Q Consensus 547 ~~~~~~~~ 554 (745)
.+|+.|++
T Consensus 260 iiddtp~~ 267 (535)
T PRK00106 260 IIDDTPEV 267 (535)
T ss_pred EEcCCCCe
Confidence 44555544
No 435
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.66 E-value=1.3e+02 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
-..+..+++.+..+..++...+....++..+-..+..|+..||..|...+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666555555555555555556666666666665443
No 436
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=43.59 E-value=15 Score=38.98 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=18.2
Q ss_pred HHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 114 VESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 114 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
...++..+..|.+. +-+|++|+|||+..
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 33344444455544 55899999999864
No 437
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=43.58 E-value=10 Score=49.25 Aligned_cols=24 Identities=38% Similarity=0.572 Sum_probs=9.0
Q ss_pred ccccccccccccccCCchhhHHHH
Q 004553 617 VFEEEEIEDEEDDHKDSAEDEVEK 640 (745)
Q Consensus 617 ~~e~~~~e~e~~~~~~~~~~~~~~ 640 (745)
-+||+++|||+|+++|+++||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~e~~~~~~ 178 (2849)
T PTZ00415 155 DDDEDEDEDDDDEEDDEEEEEEEE 178 (2849)
T ss_pred Cccccccccccccccccccccccc
Confidence 333333333333333333333333
No 438
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.51 E-value=5e+02 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004553 499 ILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+..++.++..|+++|.+..+.+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666666655555
No 439
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.43 E-value=2.8e+02 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=8.8
Q ss_pred EeeCCCCCCCcccccCC
Q 004553 130 MMYGPTGSGKSHTMFGC 146 (745)
Q Consensus 130 faYGqTGSGKTyTm~G~ 146 (745)
+|||----+|+-||-|+
T Consensus 616 l~y~~~~r~k~valdGt 632 (1141)
T KOG0018|consen 616 LAYGGEIRFKVVALDGT 632 (1141)
T ss_pred hhhcccccceEEEeeee
Confidence 45554444555555553
No 440
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.42 E-value=2.5e+02 Score=32.13 Aligned_cols=92 Identities=27% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 409 YKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFV 488 (745)
Q Consensus 409 ~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~ 488 (745)
.......+..-++...-...|+..+..+..|+.+|+..+++ .+....-+..|++++.+..++.+-..
T Consensus 234 y~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e-------------~rnvavek~~lerkl~ea~rl~elre 300 (575)
T KOG4403|consen 234 YRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE-------------QRNVAVEKLDLERKLDEAPRLSELRE 300 (575)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhchhhhhhhHHHHHhhhhhhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 489 EIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 489 e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
..+...... |+|.||..+...|+||
T Consensus 301 g~e~e~~rk-------elE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 301 GVENETSRK-------ELEQLRVALEKAEKEL 325 (575)
T ss_pred chhHHHHHH-------HHHHHHHHHHHHHHHH
No 441
>PRK14974 cell division protein FtsY; Provisional
Probab=43.21 E-value=23 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=16.1
Q ss_pred ceEEEeeCCCCCCCccccc
Q 004553 126 KCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm~ 144 (745)
...|.-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999973
No 442
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.20 E-value=7e+02 Score=30.44 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004553 498 RILQQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le 517 (745)
-+.-++.|++.|+.++-.++
T Consensus 276 tv~~LqeE~e~Lqskl~~~~ 295 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLE 295 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34455666666665554443
No 443
>PRK04325 hypothetical protein; Provisional
Probab=43.17 E-value=1.4e+02 Score=25.75 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
+.+.|..|+..+.-.+.-++++...+-+...++..|+.++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 444
>PRK02119 hypothetical protein; Provisional
Probab=43.13 E-value=1.6e+02 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=36.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
.+..+|..|+.++..+...++.+...+.+.+..|..+..++..|..++....
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777777777776776677777777777777888888877776543
No 445
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=43.11 E-value=2.7e+02 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLEEIE 517 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~~Le 517 (745)
.+..++..++.++..+..++..+.
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666655543
No 446
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.06 E-value=10 Score=43.39 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.2
Q ss_pred eEEEeeCCCCCCCcccccC
Q 004553 127 CTIMMYGPTGSGKSHTMFG 145 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G 145 (745)
..|+-.|+||+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3566679999999999743
No 447
>PRK11281 hypothetical protein; Provisional
Probab=42.72 E-value=5.8e+02 Score=33.20 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004553 499 ILQQQQEVEMLRRRLEEIEFELC 521 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL~ 521 (745)
...++.|...++.++..++.+|.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666665653
No 448
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.34 E-value=13 Score=42.82 Aligned_cols=24 Identities=46% Similarity=0.761 Sum_probs=17.6
Q ss_pred hhhcccCcceEEEeeCCCCCCCcccc
Q 004553 118 ISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 118 V~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
|..++.|.++ ++..+||||||.+.
T Consensus 20 i~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 20 INAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 3346678874 56689999999864
No 449
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=42.26 E-value=18 Score=41.60 Aligned_cols=24 Identities=33% Similarity=0.725 Sum_probs=19.1
Q ss_pred eEEEeeCCCCCCCcccccCCCCCCchHHHHHH
Q 004553 127 CTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLK 158 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G~~~~~GIIpral~ 158 (745)
.-++.+|+||||||.++ +||-++.
T Consensus 45 ~h~lvig~tgSGKt~~~--------viP~ll~ 68 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--------VIPNLLN 68 (469)
T ss_pred eEEEEEeCCCCCcccee--------eHhHHHh
Confidence 45788999999999988 5666554
No 450
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.19 E-value=1.5e+02 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
+++.|..|+..+...+.-++++...+-+...++..|+.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 451
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=42.18 E-value=10 Score=36.06 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=12.7
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998863
No 452
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.11 E-value=6e+02 Score=29.37 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLL---------------KKEEEVSQLRAKLQLVEEKGSGASEQEINVK 461 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~---------------~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k 461 (745)
+..++..+++.+...+.++...+.....++..+. .+..++.+++.++..+...-...+-.
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~----- 276 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPD----- 276 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004553 462 VTERTQILKHQLEKKLEECQRMAEEF----------------VEIERRRMEERILQQQQEVEMLRRRLEEIEFELCHSR 524 (745)
Q Consensus 462 ~~e~~~~l~~ele~~~ee~~~~~e~~----------------~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL~~s~ 524 (745)
...++.+++.-.....+..... ........+.++..++.+...|++++++++.++...+
T Consensus 277 ----v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 351 (498)
T TIGR03007 277 ----VIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIP 351 (498)
T ss_pred ----HHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=42.08 E-value=11 Score=31.36 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=12.2
Q ss_pred EEeeCCCCCCCcccc
Q 004553 129 IMMYGPTGSGKSHTM 143 (745)
Q Consensus 129 IfaYGqTGSGKTyTm 143 (745)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999765
No 454
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=41.95 E-value=11 Score=40.35 Aligned_cols=12 Identities=58% Similarity=1.113 Sum_probs=11.2
Q ss_pred eCCCCCCCcccc
Q 004553 132 YGPTGSGKSHTM 143 (745)
Q Consensus 132 YGqTGSGKTyTm 143 (745)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999997
No 455
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=41.89 E-value=11 Score=37.15 Aligned_cols=18 Identities=44% Similarity=0.789 Sum_probs=14.5
Q ss_pred ceEEEeeCCCCCCCcccc
Q 004553 126 KCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 126 N~tIfaYGqTGSGKTyTm 143 (745)
++..+-||.+|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 345667999999999876
No 456
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=41.85 E-value=7.8e+02 Score=32.03 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=10.3
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 004553 396 ILGSKISAMDQFIYKLQMEN 415 (745)
Q Consensus 396 ~l~~~i~~l~~~i~~L~~e~ 415 (745)
.+..+...++.++..++.+.
T Consensus 177 ~lqae~~~l~~~~~~l~~~l 196 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQ 196 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 457
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.82 E-value=13 Score=45.44 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=16.8
Q ss_pred CcceEEEeeCCCCCCCccccc
Q 004553 124 GEKCTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKTyTm~ 144 (745)
|.-..++-||++|+|||++..
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 444567889999999999874
No 458
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.78 E-value=1.6e+02 Score=25.28 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
+..+|..|+.++..+...++.+.+...+.+.+|..+..++..|..++...+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666677666666666666666666667777777777777777665443
No 459
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.74 E-value=3e+02 Score=25.83 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004553 499 ILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 499 i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+..++...+.|+.++.+++..|
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 460
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=41.62 E-value=84 Score=25.39 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 403 AMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 403 ~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
.|++...+++.+-+-..-+...+...|.+++.++..|+++|+..
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566555555566788888999999999999888643
No 461
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=41.61 E-value=3.9e+02 Score=27.06 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 494 RMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 494 ~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
+..+.+.++..||..||+-|.
T Consensus 157 ~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 157 EEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888888877654
No 462
>PF13173 AAA_14: AAA domain
Probab=41.29 E-value=12 Score=35.03 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=14.0
Q ss_pred EEEeeCCCCCCCcccc
Q 004553 128 TIMMYGPTGSGKSHTM 143 (745)
Q Consensus 128 tIfaYGqTGSGKTyTm 143 (745)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999976
No 463
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.25 E-value=1.8e+02 Score=27.08 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 398 GSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 398 ~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
-..+..|++.+..+..++...+....++..+-..++.|+..||..|...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777776666666666666666666666777777777776644
No 464
>PRK00736 hypothetical protein; Provisional
Probab=41.24 E-value=1.7e+02 Score=24.84 Aligned_cols=43 Identities=5% Similarity=0.114 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 401 ISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKL 443 (745)
Q Consensus 401 i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l 443 (745)
|..|+.++..+...++.+...+.+.+.+|..+..++..|..++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444333
No 465
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.10 E-value=6.8e+02 Score=29.71 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 467 QILKHQLEKKLEECQRMAEEFVEI 490 (745)
Q Consensus 467 ~~l~~ele~~~ee~~~~~e~~~e~ 490 (745)
..+.--|+.+.++|-+|-.++...
T Consensus 383 k~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 383 KSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677776665555443
No 466
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=4.2e+02 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccccCcchhhhhhh
Q 004553 497 ERILQQQQEVEMLRRRLEEIEFELCHSRDRDVRSSKDLDGSSFARRLM 544 (745)
Q Consensus 497 e~i~~~q~e~e~Lr~~l~~Le~eL~~s~~~~~~~~~~l~~~~~~~~~~ 544 (745)
++|+.+|.+.+.|-..-.++..-|.++..... ++.-..+..+.
T Consensus 126 d~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe-----ide~dL~aELd 168 (218)
T KOG1655|consen 126 DKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD-----IDEADLDAELD 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----cCHHHHHHHHH
Confidence 57889999999999999999988877666543 56655555554
No 467
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=40.98 E-value=3.5e+02 Score=28.01 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004553 466 TQILKHQLEKKLEECQRMAE 485 (745)
Q Consensus 466 ~~~l~~ele~~~ee~~~~~e 485 (745)
++.|+++.++..+.+|++.+
T Consensus 76 m~~Lea~VEkrD~~IQqLqk 95 (272)
T KOG4552|consen 76 MRTLEAHVEKRDEVIQQLQK 95 (272)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444433
No 468
>PRK04325 hypothetical protein; Provisional
Probab=40.97 E-value=1.7e+02 Score=25.26 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
+..+|..|+.++..+...++.+-..+.+.+.+|..+..++..|..++...+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667777777777666666677777777777777777777877776544
No 469
>PRK00131 aroK shikimate kinase; Reviewed
Probab=40.95 E-value=13 Score=35.96 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCCcccc
Q 004553 127 CTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm 143 (745)
-.|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 37889999999999863
No 470
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.81 E-value=6.6e+02 Score=29.44 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHHH
Q 004553 421 ERNEAHDKLLKKEEEVSQLRAKLQLVEEKG--SGASEQEINVKVTERTQILK 470 (745)
Q Consensus 421 e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~--~~~~e~e~~~k~~e~~~~l~ 470 (745)
.+.+++.++.++...+-++--++.-++... ....|++|..|+...+..++
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhc
Confidence 344555555566666655554444444432 33456666666554444443
No 471
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.78 E-value=2.1e+02 Score=24.33 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 397 LGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQ 444 (745)
Q Consensus 397 l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~ 444 (745)
|..++..+..++...+.+++....++..+...|...-.++.+|+.++.
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555556666666666666666666666665554
No 472
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=40.70 E-value=20 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCCcccc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm 143 (745)
.|.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 689999999999999999986
No 473
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.62 E-value=4.6e+02 Score=31.71 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 409 YKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFV 488 (745)
Q Consensus 409 ~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~ 488 (745)
..+..-..............+.++..++..+..++..++.+.......+.-.++.+....++.++.+...++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~------- 445 (650)
T TIGR03185 373 SELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIE------- 445 (650)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 489 EIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 489 e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
.+.+++..+..+++.+++++..+....
T Consensus 446 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 446 -----ELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK00295 hypothetical protein; Provisional
Probab=40.56 E-value=1.6e+02 Score=24.99 Aligned_cols=43 Identities=9% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 404 MDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLV 446 (745)
Q Consensus 404 l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~ 446 (745)
+++.|..|+..+...+.-++++...+.+...++..|+.++..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777766666666666666666666666666555433
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=40.55 E-value=16 Score=37.44 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=20.6
Q ss_pred hhhhhcccC---cceEEEeeCCCCCCCcccc
Q 004553 116 SRISGVKLG---EKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 116 plV~~vl~G---~N~tIfaYGqTGSGKTyTm 143 (745)
+-+|.++.| ...++.-+|++|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 445666664 3456788999999999865
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.50 E-value=12 Score=43.63 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.1
Q ss_pred eEEEeeCCCCCCCccccc
Q 004553 127 CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~ 144 (745)
..|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 456678999999999974
No 477
>PHA02653 RNA helicase NPH-II; Provisional
Probab=40.47 E-value=24 Score=42.78 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=25.0
Q ss_pred EeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCccc
Q 004553 94 SLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 94 ~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyT 142 (745)
.|..|-+ .+-|..+-+.++.. ++.|. .|+..|+||||||..
T Consensus 155 ~~~~~~l--~~~~~~iQ~qil~~----i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 155 PFSKIPL--ASLQPDVQLKIFEA----WISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred ccccccC--CchhHHHHHHHHHH----HHhCC--CEEEECCCCCCchhH
Confidence 5666522 33455554443433 33444 458899999999976
No 478
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=40.24 E-value=11 Score=41.43 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCCCccccc
Q 004553 127 CTIMMYGPTGSGKSHTMF 144 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~ 144 (745)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 356779999999999874
No 479
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.16 E-value=4.4e+02 Score=27.24 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004553 500 LQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 500 ~~~q~e~e~Lr~~l~~Le~ 518 (745)
..+..||..|+..+..|-.
T Consensus 159 ~~i~~EN~~L~k~L~~l~~ 177 (206)
T PF14988_consen 159 RSIKRENQQLRKELLQLIQ 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 480
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.01 E-value=5e+02 Score=27.79 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004553 498 RILQQQQEVEMLRRRLEEIEF 518 (745)
Q Consensus 498 ~i~~~q~e~e~Lr~~l~~Le~ 518 (745)
.+..+..|-..||+++.--.+
T Consensus 165 svqRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 165 SVQRLKDEARDLRQELAVRTK 185 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555554443
No 481
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=39.91 E-value=18 Score=39.49 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=19.1
Q ss_pred HHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 114 VESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 114 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+..++...+.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 344454444332 45666799999999976
No 482
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.83 E-value=1.3e+02 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 400 KISAMDQFIYKLQMENKLREKERNEAHDKLLKKE 433 (745)
Q Consensus 400 ~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ 433 (745)
.++.-.+.|..|+.+.+.+.+........+.++.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr 39 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR 39 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444455555555555444443333333333333
No 483
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=39.61 E-value=16 Score=43.90 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred eEEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 92 DFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 92 ~F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
.-+||.+ ++.+ ..... ++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~i-iGqs----~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEI-VGQE----RAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhc-eeCc----HHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4567777 4332 23332 333444566777888999999999875
No 484
>PHA02244 ATPase-like protein
Probab=39.53 E-value=25 Score=39.58 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=14.4
Q ss_pred cCcceEEEeeCCCCCCCcccc
Q 004553 123 LGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 123 ~G~N~tIfaYGqTGSGKTyTm 143 (745)
.|.+ |+-+|++|+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4555 455899999999875
No 485
>PRK04328 hypothetical protein; Provisional
Probab=39.43 E-value=17 Score=38.26 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred hhhhhcccC---cceEEEeeCCCCCCCccc
Q 004553 116 SRISGVKLG---EKCTIMMYGPTGSGKSHT 142 (745)
Q Consensus 116 plV~~vl~G---~N~tIfaYGqTGSGKTyT 142 (745)
+-++.++.| ...+++-+|.+|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 345666665 477888999999999753
No 486
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=39.36 E-value=18 Score=37.87 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 111 KKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 111 ~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+.+...+...+-..+-+++ +|++|||||.|+
T Consensus 19 ~r~~~~l~~al~~~~~~~~--~GpagtGKteti 49 (231)
T PF12774_consen 19 DRCFLTLTQALSLNLGGAL--SGPAGTGKTETI 49 (231)
T ss_dssp HHHHHHHHHHHCTTTEEEE--ESSTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCCCC--cCCCCCCchhHH
No 487
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=39.30 E-value=15 Score=44.30 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
...|..++.....++ -.|+.|||||||+
T Consensus 163 ~~Av~~~l~~~~~~l-I~GpPGTGKT~t~ 190 (637)
T TIGR00376 163 KEAVSFALSSKDLFL-IHGPPGTGKTRTL 190 (637)
T ss_pred HHHHHHHhcCCCeEE-EEcCCCCCHHHHH
No 488
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.25 E-value=18 Score=37.46 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhhhhcccCc---ceEEEeeCCCCCCCcc
Q 004553 116 SRISGVKLGE---KCTIMMYGPTGSGKSH 141 (745)
Q Consensus 116 plV~~vl~G~---N~tIfaYGqTGSGKTy 141 (745)
+-++.++.|- .++++.+|.+|||||+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~ 40 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSV 40 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHH
No 489
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=39.16 E-value=14 Score=44.53 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=0.0
Q ss_pred HhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 115 ESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 115 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
..+|..++.|.+ |++.+|||||||.+.
T Consensus 34 ~~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 34 AECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHHcCCC--EEEEcCCCCcHHHHH
No 490
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.06 E-value=6.7e+02 Score=29.05 Aligned_cols=136 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHhcccccCCCCCCCCCcCCchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 368 EYGAKAKCIIRGPHTPDKIGAEDSSSAVILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVE 447 (745)
Q Consensus 368 rfa~rak~I~~~p~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e 447 (745)
|-|.-+|.|-..|+.. ..+...-..-+....+++.+.+.-+.....+..+-.+...|-..--.+-+...
T Consensus 80 RaAKAlrein~s~~aK-----------~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~ 148 (630)
T KOG0742|consen 80 RAAKALREINHSPYAK-----------DVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQ 148 (630)
T ss_pred HHHHHHHhhccCccHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 448 EKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLE 514 (745)
Q Consensus 448 ~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~ 514 (745)
....+.++.++..+..+.....+..+...+-.+|+.--...+.-++--++++..+..+.|..|.+++
T Consensus 149 k~q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~E 215 (630)
T KOG0742|consen 149 KQQRARYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAE 215 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
No 491
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.00 E-value=15 Score=41.70 Aligned_cols=33 Identities=18% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHh---hhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 111 KKFVES---RISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 111 ~~~v~p---lV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
+.++.. +...+-.+.-..++-||++|+|||+..
T Consensus 18 ~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 18 EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
No 492
>PF15294 Leu_zip: Leucine zipper
Probab=39.00 E-value=5.4e+02 Score=27.95 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 004553 392 SSAVILGSKISAMDQFIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKH 471 (745)
Q Consensus 392 ~~~~~l~~~i~~l~~~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ 471 (745)
.....+..+|.+|+.+...|+..+...++....+..+-.+++.++..|+...-.............--..+...+..++.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~ 204 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKS 204 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 472 QLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 472 ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
++++.........+ .+++.+..-..++-+.+.++...+.+|
T Consensus 205 e~ek~~~d~~~~~k--------~L~e~L~~~KhelL~~QeqL~~aekeL 245 (278)
T PF15294_consen 205 ELEKALQDKESQQK--------ALEETLQSCKHELLRVQEQLSLAEKEL 245 (278)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcchhhhcchhhH
No 493
>PRK07261 topology modulation protein; Provisional
Probab=38.98 E-value=13 Score=36.75 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=0.0
Q ss_pred EEeeCCCCCCCcc
Q 004553 129 IMMYGPTGSGKSH 141 (745)
Q Consensus 129 IfaYGqTGSGKTy 141 (745)
|+..|.+|||||+
T Consensus 3 i~i~G~~GsGKST 15 (171)
T PRK07261 3 IAIIGYSGSGKST 15 (171)
T ss_pred EEEEcCCCCCHHH
No 494
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.95 E-value=1.5e+02 Score=34.33 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 454 SEQEINVKVTERTQILKHQLEKKLEECQRMAEEFVEIERRRMEERILQQQQEVEMLRRRLEEI 516 (745)
Q Consensus 454 ~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~L 516 (745)
+.+.-+.......+.--++|+++++.+++.++.+..... ..++++.+++.++..|+.+++.+
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~-dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG-DDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHhh
No 495
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=38.88 E-value=14 Score=43.13 Aligned_cols=13 Identities=62% Similarity=0.879 Sum_probs=0.0
Q ss_pred EEeeCCCCCCCcc
Q 004553 129 IMMYGPTGSGKSH 141 (745)
Q Consensus 129 IfaYGqTGSGKTy 141 (745)
||..|+|+|||||
T Consensus 194 i~H~GPTNSGKTy 206 (700)
T KOG0953|consen 194 IMHVGPTNSGKTY 206 (700)
T ss_pred EEEeCCCCCchhH
No 496
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=38.83 E-value=19 Score=39.98 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEeccccCCCcchHHHHHHHHHHhhhhhcccCcceEEEeeCCCCCCCcccc
Q 004553 93 FSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTM 143 (745)
Q Consensus 93 F~FD~V~f~~~~~Q~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 143 (745)
|.|..| ..|+.+ ..-++-.+++..-+-|+-.|.+|+|||..+
T Consensus 1 ~pf~~i-----vgq~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAI-----VGQDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccc-----ccHHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
No 497
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=38.82 E-value=13 Score=36.49 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=0.0
Q ss_pred EEeeCCCCCCCcc
Q 004553 129 IMMYGPTGSGKSH 141 (745)
Q Consensus 129 IfaYGqTGSGKTy 141 (745)
|+.+|..|||||+
T Consensus 2 i~i~G~pGsGKst 14 (183)
T TIGR01359 2 VFVLGGPGSGKGT 14 (183)
T ss_pred EEEECCCCCCHHH
No 498
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=38.71 E-value=13 Score=40.16 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=0.0
Q ss_pred CcceEEEeeCCCCCCCc
Q 004553 124 GEKCTIMMYGPTGSGKS 140 (745)
Q Consensus 124 G~N~tIfaYGqTGSGKT 140 (745)
|++-+|+..|++|+|||
T Consensus 2 g~~fnImVvG~sG~GKT 18 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKT 18 (281)
T ss_dssp EEEEEEEEEECTTSSHH
T ss_pred CceEEEEEECCCCCCHH
No 499
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=38.62 E-value=5.1e+02 Score=33.34 Aligned_cols=97 Identities=20% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 407 FIYKLQMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEE 486 (745)
Q Consensus 407 ~i~~L~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~ 486 (745)
.+.+-+.+.+.++++..+....-.+..+.-...+.+-+..+.. .....+.++++..+.+++..+
T Consensus 429 r~eke~~ER~r~e~e~~er~~~er~~~E~er~er~e~e~~er~----------------Erer~er~erer~Erer~erE 492 (1021)
T PTZ00266 429 RVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERL----------------ERERMERIERERLERERLERE 492 (1021)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 487 FVEIERRRMEERILQQQQEVEMLRRRLEEIEFE 519 (745)
Q Consensus 487 ~~e~e~~~~ee~i~~~q~e~e~Lr~~l~~Le~e 519 (745)
..+.++.+.++.....++.+++++++..+.++.
T Consensus 493 r~erer~erer~~r~e~er~~r~e~e~~e~~rr 525 (1021)
T PTZ00266 493 RLERDRLERDRLDRLERERVDRLERDRLEKARR 525 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.48 E-value=7.3e+02 Score=29.31 Aligned_cols=92 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004553 412 QMENKLREKERNEAHDKLLKKEEEVSQLRAKLQLVEEKGSGASEQEINVKVTERTQILKHQLEKKLEECQRMAEEFVEIE 491 (745)
Q Consensus 412 ~~e~~~~~~e~~~~~~~l~~~~ee~~~Lr~~l~~~e~~~~~~~e~e~~~k~~e~~~~l~~ele~~~ee~~~~~e~~~e~e 491 (745)
...+...-.++..+..+......+...|..+|...+.. .+.+..+|......+.++.+++....
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e----------------k~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE----------------KESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004553 492 RRRMEERILQQQQEVEMLRRRLEEIEFEL 520 (745)
Q Consensus 492 ~~~~ee~i~~~q~e~e~Lr~~l~~Le~eL 520 (745)
+ .++.|+..+-+-+-.|..++..-.+++
T Consensus 483 ~-NYE~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 483 R-NYEEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!