Query 004553
Match_columns 745
No_of_seqs 295 out of 2208
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 18:17:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004553.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1858-1862//hhsearch_pdb/004553hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2owm_A Nckin3-434, related to 1.0 1 1 663.5 23.9 328 44-384 33-421 (443)
2 3bfn_A Kinesin-like protein KI 1.0 1 1 654.0 23.9 329 45-387 17-358 (388)
3 2vvg_A Kinesin-2; motor protei 1.0 1 1 653.8 21.0 322 48-385 3-344 (350)
4 3b6u_A Kinesin-like protein KI 1.0 1 1 652.7 20.8 327 44-385 16-362 (372)
5 1x88_A Kinesin-like protein KI 1.0 1 1 651.8 22.1 326 45-384 4-358 (359)
6 2wbe_C Bipolar kinesin KRP-130 1.0 1 1 651.1 17.9 328 44-386 18-371 (373)
7 3cob_A Kinesin heavy chain-lik 1.0 1 1 650.2 22.5 324 46-385 2-336 (369)
8 2y65_A Kinesin, kinesin heavy 1.0 1 1 648.7 19.3 325 44-387 6-344 (365)
9 2zfi_A Kinesin-like protein KI 1.0 1 1 646.2 18.7 321 48-383 3-361 (366)
10 1goj_A Kinesin, kinesin heavy 1.0 1 1 643.6 24.0 326 47-388 4-342 (355)
No 1
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=1.00 E-value=1 Score=663.49 Aligned_cols=328 Identities=29% Similarity=0.410 Sum_probs=285.4
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCC----------------CCEEEEECCCCCC------
Q ss_conf 999999948999848999999999998459994999799994388----------------8512783530499------
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF----------------GYRDFSLDGVSLS------ 101 (745)
Q Consensus 44 ~~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~~----------------~~~~F~FD~V~f~------ 101 (745)
.....++|+|+|||||+...|...+..+++.+++....+.+..+. ..+.|.||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred CCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCC
T ss_conf 67899894999993999968862699459997589862799558876543333321233667726852738278776776
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCEEEEEEEE
Q ss_conf 9602899999988766531026753589840789988763135788998407989999752112368-766603899999
Q 004553 102 EEEDLDSFYKKFVESRISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNG-EKIGFSTFVQVT 180 (745)
Q Consensus 102 ~~~sQ~~vy~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~-~~~~~~~~V~vS 180 (745)
+.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+..++|||||++++||..+.... ...+..|.|+||
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 57879999876324688886368742799867889999888646877775379999999998876521367734999999
Q ss_pred EEEEECCEEEECCCCCCCC----CCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9997356121056889999----975557999998159998131257634984343788999999998614333456758
Q 004553 181 VLEIYNEEIYDLLSSNNGG----GFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNE 256 (745)
Q Consensus 181 ~~EIYnE~I~DLL~~~~~~----~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~ 256 (745)
|+|||||+|||||++.... .+.+++.. ..+.++.|++++.+.++++++.+|..|.++|.+++|.||.
T Consensus 193 ~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~---------~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~ 263 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESP---------TEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMND 263 (443)
T ss_dssp EEEEETTEEEETTSCCCSSCCCCCCEEEEET---------TTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSC
T ss_pred EEEEECCEEEECCCCCCCCCCCCCCCEEECC---------CCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999889756856763457865344303779---------9999526877998289999999999997337863375877
Q ss_pred CCCCCCEEEEEEEEEE------------CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--
Q ss_conf 8888410278756310------------56012331578863000134438898988520010488999999971899--
Q 004553 257 RSSRSHCMIILDVPTV------------GGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-- 322 (745)
Q Consensus 257 ~SSRSH~If~I~v~~~------------~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~-- 322 (745)
.|||||+||+|.|.+. .|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.++
T Consensus 264 ~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlk-E~~~INkSL~aLg~vI~aL~~~~~~ 342 (443)
T 2owm_A 264 TSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLR-EGSNINKSLTTLGRVIAALADPKSS 342 (443)
T ss_dssp BCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC---------------CCSSHHHHHHHHHHHHHCC----
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CHHHHCHHHHHHHHHHHHHHCCCCC
T ss_conf 667771999999998603567887406887799997988753565677664121-1001057899999999998604555
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf --------------------844689982000012335898862289998289987878779998999881222158887
Q 004553 323 --------------------SHVPFRDSKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHT 382 (745)
Q Consensus 323 --------------------~~VPyRdSKLTrLLqdsLgG~nskt~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~ 382 (745)
.||||||||||+||||+||| |++|+||+||||+ +++||++||+||+|||+|+|+|.+
T Consensus 343 ~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgG-nskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~v 419 (443)
T 2owm_A 343 ASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGG-NSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVV 419 (443)
T ss_dssp ---------------------CCCGGGSHHHHHSTTTTTS-SCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 5544432223433344567774557454768888886279-9708999981643--078999999999998544563335
Q ss_pred CC
Q ss_conf 88
Q 004553 383 PD 384 (745)
Q Consensus 383 ~~ 384 (745)
|.
T Consensus 420 N~ 421 (443)
T 2owm_A 420 NQ 421 (443)
T ss_dssp CC
T ss_pred CC
T ss_conf 13
No 2
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=653.97 Aligned_cols=329 Identities=27% Similarity=0.457 Sum_probs=288.8
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECC---CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9999994899984899999999999845999499979999438---8851278353049996028999999887665310
Q 004553 45 APQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD---FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGV 121 (745)
Q Consensus 45 ~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~---~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~~v 121 (745)
.+..++|+|+|||||+...|...+...++... +..++.+... ...+.|.||+| |+++++|++||+.++.|+|+.+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~~~~~~~~~f~FD~V-f~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANWRNHQETLKYQFDAF-YGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp SSCCCCCEEEEEECCCC------------------------------CEEEEECSEE-ECTTCCHHHHHHHHTGGGHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHCCCCCCEEEEC-CCCEEEEECCCCCCCEEEEECCEE-ECCCCCHHHHHHHHHHHHHHHH
T ss_conf 68999979999779899145346998639955-998599956888877059872369-5678977577899888888876
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCEEEEEEEEEEEEECCEEEECCCCCCCCC
Q ss_conf 26753589840789988763135788998407989999752112368-76660389999999973561210568899999
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNG-EKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGG 200 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~-~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~ 200 (745)
++|||+||||||||||||||||+|+..++|||||++.+||..+.... ....+.|.|++||+|||||+|||||.+... .
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~ 173 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-D 173 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC-B
T ss_pred HCCCEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEHHCCCCC-C
T ss_conf 169656676116888999768656755664168999999999987423377714899999999988864560016788-8
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE---------
Q ss_conf 75557999998159998131257634984343788999999998614333456758888841027875631---------
Q 004553 201 FGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT--------- 271 (745)
Q Consensus 201 l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~--------- 271 (745)
+.+++.... +.++.|++++.+.++++++.+|..|.++|.+++|.||..|||||+||+|.|.+
T Consensus 174 l~ired~~~---------~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 244 (388)
T 3bfn_A 174 LVIREDCRG---------NILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ 244 (388)
T ss_dssp CCCEECTTS---------CEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCE
T ss_pred CEEEECCCC---------CEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCE
T ss_conf 459986999---------98853605999589999999999975026522364778777773999999998226888733
Q ss_pred ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 05601233157886300013443889898852001048899999997189984468998200001233589886228999
Q 004553 272 VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVL 351 (745)
Q Consensus 272 ~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~ 351 (745)
..|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.+..||||||||||+||||+||| |++|+||+
T Consensus 245 ~~skL~lVDLAGSEr~~~t~~~g~rlk-E~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgG-nskT~mIa 322 (388)
T 3bfn_A 245 REGKLYLIDLAGSEDNRRTGNKGLRLK-ESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGG-SAHSILIA 322 (388)
T ss_dssp EEEEEEEEECCCTTC---------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSST-TCEEEEEE
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEE
T ss_conf 688999998987766554567551147-7767506399999999999669998867565889999986089-96289999
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 828998787877999899988122215888788788
Q 004553 352 CASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIG 387 (745)
Q Consensus 352 ~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~~ 387 (745)
||||+..+++||++||+||+|||+|+|+|.+|..+.
T Consensus 323 ~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~ 358 (388)
T 3bfn_A 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQ 358 (388)
T ss_dssp EECCSGGGHHHHHHHHHHHCSEEEEC----------
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 979850008999999999999851757673567899
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=1.00 E-value=1 Score=653.79 Aligned_cols=322 Identities=31% Similarity=0.429 Sum_probs=290.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCC----------CCEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99948999848999999999998459994999799994388----------85127835304999602899999988766
Q 004553 48 DHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF----------GYRDFSLDGVSLSEEEDLDSFYKKFVESR 117 (745)
Q Consensus 48 ~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~~----------~~~~F~FD~V~f~~~~sQ~~vy~~~v~pl 117 (745)
.++|+|+|||||+...|...+...++.+.++..++.+..+. ..+.|.||+| |+++++|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~V-f~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV-YDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEE-ECTTCCHHHHHHHTTHHH
T ss_pred CCCEEEEEEECCCCHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCEE-ECCCCCHHHHHHHHHHHH
T ss_conf 9986999990979913320499538998499988999604554433445778527667889-799761068998789999
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCCCC
Q ss_conf 53102675358984078998876313578899840798999975211236876660389999999973561210568899
Q 004553 118 ISGVKLGEKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNN 197 (745)
Q Consensus 118 V~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~ 197 (745)
|+.+++|||+||||||||||||||||+|+..++|||||++++||..+.... ....|.|++||+|||||+|||||.+..
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~ 159 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSS--SNQNFLVIGSYLELYNEEIRDLIKNNT 159 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCC--TTEEEEEEEEEEEEETTEEEETTTTEE
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCEEEECCCCCC
T ss_conf 999857885268864689999987853587667558899999999998653--687579999999992878888556776
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE------
Q ss_conf 99975557999998159998131257634984343788999999998614333456758888841027875631------
Q 004553 198 GGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT------ 271 (745)
Q Consensus 198 ~~~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~------ 271 (745)
.+.+++.+. .+.++.|++++.+.++++++.++..|.++|++++|.+|..|||||+||+|++..
T Consensus 160 --~l~i~e~~~---------~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 228 (350)
T 2vvg_A 160 --KLPLKEDKT---------RGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIEN 228 (350)
T ss_dssp --EECEEEETT---------TEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC---
T ss_pred --CCEEEECCC---------CCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf --842567489---------988815877997499999999999998414600145788887652999999999504678
Q ss_pred ----ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ----0560123315788630001344388989885200104889999999718998446899820000123358988622
Q 004553 272 ----VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKI 347 (745)
Q Consensus 272 ----~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt 347 (745)
..|+|+|||||||||..++++.|.+++ |+.+||+||++||+||.+|+.++.||||||||||+||||+||| |++|
T Consensus 229 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~-E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgG-nskt 306 (350)
T 2vvg_A 229 KEVIRVGKLNLVDLAGSERQSKTGATGETLV-EGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGG-NSKT 306 (350)
T ss_dssp -CEEEEEEEEEEECCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTS-SSEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCE
T ss_conf 7617889999996898875544565077889-9988758999999999999738998876455888998986089-9628
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89998289987878779998999881222158887887
Q 004553 348 LMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 348 ~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
+||+||||+..+++||++||+||+|||+|+|+|.+|..
T Consensus 307 ~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~ 344 (350)
T 2vvg_A 307 LMCANISPASTNYDETMSTLRYADRAKQIKNKPRINED 344 (350)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 99999688400189999999999998544566612578
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=1.00 E-value=1 Score=652.68 Aligned_cols=327 Identities=30% Similarity=0.419 Sum_probs=293.6
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCC-----CCEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999948999848999999999998459994999799994388-----851278353049996028999999887665
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF-----GYRDFSLDGVSLSEEEDLDSFYKKFVESRI 118 (745)
Q Consensus 44 ~~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~~-----~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV 118 (745)
.....++|+|+|||||+...|...+...++.+.++..++.+..+. ..+.|.||+| |+++++|++||+.++.|+|
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~V-f~~~~~Q~~Vy~~~~~plv 94 (372)
T 3b6u_A 16 FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAV-YDWNAKQFELYDETFRPLV 94 (372)
T ss_dssp -----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEE-ECTTCCHHHHHHHTHHHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEECCEE-ECCCCCHHHHHHHHHHHHH
T ss_conf 678999839999869899355304996389995899879997788777778438876869-6886741789887877778
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCC
Q ss_conf 31026753589840789988763135788---998407989999752112368766603899999999735612105688
Q 004553 119 SGVKLGEKCTIMMYGPTGSGKSHTMFGCA---KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSS 195 (745)
Q Consensus 119 ~~vl~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~ 195 (745)
+.+++|||+||||||||||||||||+|.. .++|||||++++||..+... ....|.|++||+|||||+|||||++
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~---~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS---QNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC---SSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEEEEEEEECCEEEECCCC
T ss_conf 9986798135886568999998757558998344881889999999986514---5773699998999967888997789
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE----
Q ss_conf 9999975557999998159998131257634984343788999999998614333456758888841027875631----
Q 004553 196 NNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT---- 271 (745)
Q Consensus 196 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~---- 271 (745)
.....+.+++.+. .+.++.|++.+.+.++++++.+|..|.++|.+++|.||..|||||+||+|.|..
T Consensus 172 ~~~~~l~i~e~~~---------~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 242 (372)
T 3b6u_A 172 DQTKRLELKERPD---------TGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVG 242 (372)
T ss_dssp CTTCCBCEEEETT---------TEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC--
T ss_pred CCCCCCEEEECCC---------CCEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 7777736898799---------9675289889992679999999999997667254557787776429999999996047
Q ss_pred -------ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------056012331578863000134438898988520010488999999971899-844689982000012335898
Q 004553 272 -------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGD-SHVPFRDSKLTMLLQDSFEDD 343 (745)
Q Consensus 272 -------~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~-~~VPyRdSKLTrLLqdsLgG~ 343 (745)
..|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.++ .||||||||||+||||+|||
T Consensus 243 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgG- 320 (372)
T 3b6u_A 243 LDGENHIRVGKLNLVDLAGSERQAKTGAQGERLK-EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGG- 320 (372)
T ss_dssp ---CCCEEEEEEEEEECCCCCE----------EE-EGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTS-
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC-
T ss_conf 7887626788999997988765544575154314-67565064999999999986389887866220889999986299-
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 862289998289987878779998999881222158887887
Q 004553 344 KSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 344 nskt~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
|++|+||+||||+..+++||++||+||+|||+|+|+|.+|..
T Consensus 321 nskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~ 362 (372)
T 3b6u_A 321 NAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNED 362 (372)
T ss_dssp SSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 954899999688524799999999999998645566625577
No 5
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=1.00 E-value=1 Score=651.77 Aligned_cols=326 Identities=31% Similarity=0.483 Sum_probs=288.3
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECC-----CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994899984899999999999845999499979999438-----88512783530499960289999998876653
Q 004553 45 APQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD-----FGYRDFSLDGVSLSEEEDLDSFYKKFVESRIS 119 (745)
Q Consensus 45 ~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~-----~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~ 119 (745)
++..++|+|+|||||+...|...+...++.+.+....+.+... ...+.|.||+| |+++++|++||+.++.|+|+
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~V-f~~~~~Q~~Vy~~~~~plv~ 82 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV-FGASTKQIDVYRSVVCPILD 82 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEE-ECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECEEE-EECCCCHHHHHHHHHHHHHH
T ss_conf 78999859999908999256304996499975998579983787667767448754079-85267453789999888689
Q ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCC-----------CCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCE
Q ss_conf 10267535898407899887631357889-----------9840798999975211236876660389999999973561
Q 004553 120 GVKLGEKCTIMMYGPTGSGKSHTMFGCAK-----------QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEE 188 (745)
Q Consensus 120 ~vl~G~N~tIfaYGqTGSGKTyTm~G~~~-----------~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~ 188 (745)
.+++|||+||||||||||||||||+|... .+|||||++++||..+... +..|.|++||+|||||+
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~----~~~~~v~vS~~EIYnE~ 158 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDN----GTEFSVKVSLLEIYNEE 158 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSS----SEEEEEEEEEEEEETTE
T ss_pred HHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEEEEEEEECCE
T ss_conf 87379824899847899987568856677665444445666870389999999877415----82599999999995761
Q ss_pred EEECCCCCCCC--CCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 21056889999--9755579999981599981312576349843437889999999986143334567588888410278
Q 004553 189 IYDLLSSNNGG--GFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMII 266 (745)
Q Consensus 189 I~DLL~~~~~~--~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~ 266 (745)
|||||++.... .+.+++... ...+.++.|++.+.+.++++++.+|..|.++|.+++|.||..|||||+||+
T Consensus 159 i~DLL~~~~~~~~~l~i~~~~~-------~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~ 231 (359)
T 1x88_A 159 LFDLLNPSSDVSERLQMFDDPR-------NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFS 231 (359)
T ss_dssp EEETTCTTSCTTCCBEEEEETT-------EEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEE
T ss_pred EEEHHCCCCCCCCCCEEEECCC-------CCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 0012115655566605886557-------789889828789984999999999998775146122547787777628999
Q ss_pred EEEEE-----------ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 75631-----------0560123315788630001344388989885200104889999999718998446899820000
Q 004553 267 LDVPT-----------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTML 335 (745)
Q Consensus 267 I~v~~-----------~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrL 335 (745)
|.+.. ..|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.+..||||||||||+|
T Consensus 232 i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~l 310 (359)
T 1x88_A 232 VTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERTPHVPYRESKLTRI 310 (359)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECCCCCC----------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHH
T ss_pred EEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 9998743557887137788999981899873543588632017-776530789999999999864799776225668899
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1233589886228999828998787877999899988122215888788
Q 004553 336 LQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPD 384 (745)
Q Consensus 336 LqdsLgG~nskt~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~ 384 (745)
|||+||| |++|+||+||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 311 LqdsLgG-nskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 311 LQDSLGG-RTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp TGGGSSS-SSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHHCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 9997589-97299999978974568999999999999865667661477
No 6
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=651.11 Aligned_cols=328 Identities=31% Similarity=0.449 Sum_probs=285.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECC---CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999994899984899999999999845999499979999438---885127835304999602899999988766531
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD---FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISG 120 (745)
Q Consensus 44 ~~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~---~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~~ 120 (745)
.....++|+|+|||||+...|...+...++.+..+ ..+.+... ...+.|.||+| |+++++|++||+.++.|+|+.
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~F~FD~v-f~~~~~Q~~Vy~~~~~plv~~ 95 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGP-REVVTRHTLDSKLTKKFTFDRS-FGPESKQCDVYSVVVSPLIEE 95 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETT-TEEEESSSSSSTTCEEEECSEE-ECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHCCCCCCEEEECCC-CEEEEECCCCCCCCEEEECCEE-ECCCCCHHHHHHHHHHHHHHH
T ss_conf 76789996999982989914505589856998489-8699826778888569863489-524660667999999999998
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCC-----------CCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEE
Q ss_conf 0267535898407899887631357889-----------98407989999752112368766603899999999735612
Q 004553 121 VKLGEKCTIMMYGPTGSGKSHTMFGCAK-----------QPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEI 189 (745)
Q Consensus 121 vl~G~N~tIfaYGqTGSGKTyTm~G~~~-----------~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I 189 (745)
+++|||+||||||||||||||||+|+.. ++|||||++++||..+... ...|.|++||+|||||+|
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~----~~~~~v~vS~~EIYnE~i 171 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM----EVEYTMRISYLELYNEEL 171 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC----CSCEEEEEEEEEEETTEE
T ss_pred HHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCEEEEEEEEEEEECCEE
T ss_conf 7479468999526888983152323765443334455678867699999999998725----862999999999867767
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 10568899999755579999981599981312576349843437889999999986143334567588888410278756
Q 004553 190 YDLLSSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDV 269 (745)
Q Consensus 190 ~DLL~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v 269 (745)
||||.+.....+.+++..... .+..+.|++.+.+.++++++.+|..|.++|++++|.||..|||||+||+|.+
T Consensus 172 ~DLL~~~~~~~l~i~~~~~~~-------g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 244 (373)
T 2wbe_C 172 CDLLSTDDTTKIRIFDDSTKK-------GSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVV 244 (373)
T ss_dssp EESSCTTSCSCCCEEECSSSS-------SCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEE
T ss_pred EECCCCCCCCCCEEEECCCCC-------CCEEECCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 897789877772467415778-------9578368668706999999999999863304311438888888618999999
Q ss_pred EE-----------ECCEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 31-----------0560123315788630001344-38898988520010488999999971899844689982000012
Q 004553 270 PT-----------VGGRLMLVDMAGSENIEQAGQT-GFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQ 337 (745)
Q Consensus 270 ~~-----------~~s~L~lVDLAGSEr~~~t~~~-g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLq 337 (745)
.. ..|+|+|||||||||+.++++. |.+++ |+.+||+||++||+||.+|+.+..||||||||||+|||
T Consensus 245 ~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLq 323 (373)
T 2wbe_C 245 HIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVR-ETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQ 323 (373)
T ss_dssp EECTTCTTTCCEEEEEEEEEEECCCC---------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTH
T ss_pred EEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 99657888874255899999979988746323676563146-78888888999999999997179957621656889999
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3358988622899982899878787799989998812221588878878
Q 004553 338 DSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKI 386 (745)
Q Consensus 338 dsLgG~nskt~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~ 386 (745)
|+||| |++|+||+||||+..+++||++||+||+|||+|+|+|.+|..+
T Consensus 324 dsLgG-nskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 324 ESLGG-RTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHHHS-SSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred HHHCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 87389-9609999996997345899999999999986566654333315
No 7
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=1.00 E-value=1 Score=650.24 Aligned_cols=324 Identities=25% Similarity=0.411 Sum_probs=283.3
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999994899984899999999999845999499979999438-8851278353049996028999999887665310267
Q 004553 46 PQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRAD-FGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLG 124 (745)
Q Consensus 46 ~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~-~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~~vl~G 124 (745)
...++|+|+|||||+...|...+...++.. .+..++..... ...+.|.||+| |+++++|++||+. +.|+|+.+++|
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~V-f~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRV-FDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEE-ECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCHHHCCCCCCEEEEC-CCCEEEEECCCCCCCEEEECCEE-ECCCCCCCEEHHH-HHHHHHHHHCC
T ss_conf 889984999987999834546798379976-99679993378998268865989-8999973140221-31325766469
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCCCCC--CCCC
Q ss_conf 53589840789988763135788998407989999752112368766603899999999735612105688999--9975
Q 004553 125 EKCTIMMYGPTGSGKSHTMFGCAKQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNG--GGFG 202 (745)
Q Consensus 125 ~N~tIfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~--~~l~ 202 (745)
||+||||||||||||||||+|+..++|||||++.+||..+..... .+.|.|++||+|||||+|||||.+... ..+.
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~ 156 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSN--KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLD 156 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTT--TEEEEEEEEEEEECSSCEEESSCCSSSCCCCCE
T ss_pred CCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEEEEEEECCEEEECCCCCCCCCCCEE
T ss_conf 715999878999988375117998886258999999999874135--752677899987707632345787556776427
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEE--------CC
Q ss_conf 5579999981599981312576349843437889999999986143334567588888410278756310--------56
Q 004553 203 IGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV--------GG 274 (745)
Q Consensus 203 i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~--------~s 274 (745)
+++.... +.++.|++.+.+.++++++.+|..|.++|++++|.||..|||||+||+|.+.+. .|
T Consensus 157 i~e~~~~---------~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s 227 (369)
T 3cob_A 157 IKKDSKG---------MVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARG 227 (369)
T ss_dssp EEECTTS---------CEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEE
T ss_pred EEECCCC---------CEECCCCEEEEECCHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEEEEECCCCCCEEEE
T ss_conf 8997999---------8880598799808999999999987525523034477877763389999999852787727888
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 01233157886300013443889898852001048899999997189984468998200001233589886228999828
Q 004553 275 RLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMVLCAS 354 (745)
Q Consensus 275 ~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~iS 354 (745)
+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.++.||||||||||+||||+||| ||+|+||+|||
T Consensus 228 kL~lVDLAGSEr~~~t~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgG-nskt~mIa~is 305 (369)
T 3cob_A 228 KLSFVDLAGSERVKKSGSAGNQLK-EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGG-NAKTLMFVNIS 305 (369)
T ss_dssp EEEEEECCCSSCCCCCSSCSHHHH-HHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTS-SSEEEEEEEEC
T ss_pred EEEEEECCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CCCEEEEEEEC
T ss_conf 999996887875443476302347-7878778899999999998648996787477778878876289-85279999947
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9987878779998999881222158887887
Q 004553 355 PDPKEIHKTICTLEYGAKAKCIIRGPHTPDK 385 (745)
Q Consensus 355 P~~~~~~ETlsTLrfa~rak~I~~~p~~~~~ 385 (745)
|+..+++||++||+||+|||+|++.|.+|..
T Consensus 306 P~~~~~~ETl~TLrfA~rak~i~~~~~~n~~ 336 (369)
T 3cob_A 306 PAESNLDETHNSLTYASRVRSIVNDPSKNVS 336 (369)
T ss_dssp CBGGGHHHHHHHHHHHHHHHTCBCCCCCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7200289999999999998654567741578
No 8
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=1.00 E-value=1 Score=648.72 Aligned_cols=325 Identities=28% Similarity=0.452 Sum_probs=286.1
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCC--CCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999994899984899999999999845999499--9799994388851278353049996028999999887665310
Q 004553 44 SAPQDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPD--KQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGV 121 (745)
Q Consensus 44 ~~~~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~--~~ti~~~~~~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~~v 121 (745)
..+..++|+|+|||||+...|...+...++.+.++ ..++.+. .+.|.||+| |+++++|++||+.++.|+|+.+
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~V-f~~~~~Q~~Vy~~~~~plv~~~ 80 (365)
T 2y65_A 6 EIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKV-FKPNASQEKVYNEAAKSIVTDV 80 (365)
T ss_dssp --CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEE-ECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCCEEEEC----CEEEECCEE-ECCCCCHHHHHHHHHHHHHHHH
T ss_conf 67899995999994969946731599259994799877679989----989867469-6478998999998630377998
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCCCCC
Q ss_conf 26753589840789988763135788---998407989999752112368766603899999999735612105688999
Q 004553 122 KLGEKCTIMMYGPTGSGKSHTMFGCA---KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNG 198 (745)
Q Consensus 122 l~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~ 198 (745)
++|||+||||||||||||||||+|.. ..+|||||++++||..+.... .+..|.|++||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 158 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAME--VNLEFHIKVSYYEIYMDKIRDLLDVSKV 158 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCC--SCEEEEEEEEEEEEETTEEEETTCTTCC
T ss_pred HCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEECCEEEECCCCCCC
T ss_conf 67982489834589999964886688875557737799999999998336--8953999999999987721262258767
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE-------
Q ss_conf 9975557999998159998131257634984343788999999998614333456758888841027875631-------
Q 004553 199 GGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT------- 271 (745)
Q Consensus 199 ~~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~------- 271 (745)
.+.+++.+.. +.++.|++.+.+.++++++.+|..|.++|++++|.+|..|||||+||+|.+.+
T Consensus 159 -~l~i~e~~~~---------~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 228 (365)
T 2y65_A 159 -NLSVHEDKNR---------VPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK 228 (365)
T ss_dssp -SBCEEECSSS---------CEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCC
T ss_pred -CCEEEECCCC---------CEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
T ss_conf -7237887999---------878427889965879999999999986466523568887887639999999997058887
Q ss_pred -ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf -05601233157886300013443889898852001048899999997189-9844689982000012335898862289
Q 004553 272 -VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG-DSHVPFRDSKLTMLLQDSFEDDKSKILM 349 (745)
Q Consensus 272 -~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgG~nskt~m 349 (745)
..|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.+ ..||||||||||+||||+||| |++|+|
T Consensus 229 ~~~skL~lVDLAGSEr~~~t~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgG-nskt~m 306 (365)
T 2y65_A 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLD-EAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGG-NARTTI 306 (365)
T ss_dssp EEEEEEEEEECCCCCC-----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTS-SSEEEE
T ss_pred EEEEEEEEEECCCCCCCHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCCEEE
T ss_conf 8689999997999882012189522478-99888888999998999985278887866357888987761389-963799
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99828998787877999899988122215888788788
Q 004553 350 VLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIG 387 (745)
Q Consensus 350 I~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~~ 387 (745)
|+||||+..+++||++||+||+|||+|+|.|.+|..+.
T Consensus 307 I~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~ 344 (365)
T 2y65_A 307 VICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELT 344 (365)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCC
T ss_conf 99846752788999999999999721567541178899
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=1.00 E-value=1 Score=646.21 Aligned_cols=321 Identities=28% Similarity=0.389 Sum_probs=281.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCC----CCEEEEECCCCCCCC--------CHHHHHHHHHHH
Q ss_conf 99948999848999999999998459994999799994388----851278353049996--------028999999887
Q 004553 48 DHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADF----GYRDFSLDGVSLSEE--------EDLDSFYKKFVE 115 (745)
Q Consensus 48 ~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~~----~~~~F~FD~V~f~~~--------~sQ~~vy~~~v~ 115 (745)
..+|+|+|||||+...|...+...++.+.. ..+.+..+. ..+.|.||+|| ++. ++|++||+.++.
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~i~~~~~~~~~~~~f~FD~vf-~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSG--STTTIVNPKQPKETPKSFSFDYSY-WSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEET--TEEEECCTTCTTSCCEEEECSEEE-ECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCCEEEEECCCCCHHHCCCCCCEEEEECC--CCEEEECCCCCCCCCEEEECCEEE-ECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 998089998899983551579976999779--967995367777776278624696-05766654456769999999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECC
Q ss_conf 66531026753589840789988763135788--9984079899997521123687666038999999997356121056
Q 004553 116 SRISGVKLGEKCTIMMYGPTGSGKSHTMFGCA--KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLL 193 (745)
Q Consensus 116 plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~--~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL 193 (745)
|+|+.+++|||+||||||||||||||||+|+. .++|||||++++||..+.... .....|.|++||+|||||+|||||
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~-~~~~~~~v~vS~~EIYnE~v~DLL 158 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTT-NDNMSYSVEVSYMEIYCERVRDLL 158 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCC-CTTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEEEEEEEEECCEEEECC
T ss_conf 9999974697148998589999884586478765778669999999999876402-677069999999996088478912
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE--
Q ss_conf 889999975557999998159998131257634984343788999999998614333456758888841027875631--
Q 004553 194 SSNNGGGFGIGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPT-- 271 (745)
Q Consensus 194 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~-- 271 (745)
++.....+.+++... .+.++.|++++.+.++++++.+|..|.++|.+++|.||..|||||+||+|.+.+
T Consensus 159 ~~~~~~~l~ire~~~---------~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 229 (366)
T 2zfi_A 159 NPKNKGNLRVREHPL---------LGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKR 229 (366)
T ss_dssp CTTTCSCBCEEEETT---------TEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEE
T ss_pred CCCCCCCCEEEECCC---------CCEEEECCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf 355678856888699---------98797698999977999999999997622461126577777764599999999960
Q ss_pred ----------ECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHC------------CCCCCCCCC
Q ss_conf ----------0560123315788630001344388989885200104889999999718------------998446899
Q 004553 272 ----------VGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIAN------------GDSHVPFRD 329 (745)
Q Consensus 272 ----------~~s~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~------------~~~~VPyRd 329 (745)
..|+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+. +..||||||
T Consensus 230 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~-E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRd 308 (366)
T 2zfi_A 230 HDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRD 308 (366)
T ss_dssp ECTTTTCEEEEEEEEEEEECCCGGGC------CCCHH-HHHHHHHHHHHHHHHHHHHHHHC--------------CCGGG
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4677875413676899996898864554678763004-465676789999999999871234543333456677464333
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 820000123358988622899982899878787799989998812221588878
Q 004553 330 SKLTMLLQDSFEDDKSKILMVLCASPDPKEIHKTICTLEYGAKAKCIIRGPHTP 383 (745)
Q Consensus 330 SKLTrLLqdsLgG~nskt~mI~~iSP~~~~~~ETlsTLrfa~rak~I~~~p~~~ 383 (745)
||||+||||+||| |++|+||+||||+..+++||++||+||+|||+|+++|.++
T Consensus 309 SkLT~lLqdsLgG-nskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 309 SVLTWLLRENLGG-NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp SHHHHHTGGGSST-TCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred CHHHHHHHHHHCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 2889999987289-9609999996887334999999999999984055888899
No 10
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=1.00 E-value=1 Score=643.55 Aligned_cols=326 Identities=27% Similarity=0.428 Sum_probs=289.6
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99994899984899999999999845999499979999438885127835304999602899999988766531026753
Q 004553 47 QDHPIEVVGRIRNFPNPNPKEKPSSVLQVNPDKQTLRVRADFGYRDFSLDGVSLSEEEDLDSFYKKFVESRISGVKLGEK 126 (745)
Q Consensus 47 ~~~~vkV~vRIRP~~~~e~~~~~~~~i~i~~~~~ti~~~~~~~~~~F~FD~V~f~~~~sQ~~vy~~~v~plV~~vl~G~N 126 (745)
..++|+|+|||||+...|...+...++.+.++ .++.+......+.|.||+| |+++++|++||+.++.|+|+.+++|||
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~~~~~f~FD~V-f~~~~~Q~~Vy~~~~~plv~~~l~G~n 81 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGP-DTCTVDSKEAQGSFTFDRV-FDMSCKQSDIFDFSIKPTVDDILNGYN 81 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECST-TEEEECSTTCCEEEECSEE-ECTTCCHHHHHHHHTHHHHHHHTTTCC
T ss_pred CCCCEEEEEECCCCCHHHHHCCCCEEEEECCC-CEEEECCCCCCCEEEECEE-ECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99986999988999957850699639998699-8499726897527761959-899876279999999999999857982
Q ss_pred EEEEEECCCCCCCCCCCCCCC----CCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCCCCCCCCC
Q ss_conf 589840789988763135788----9984079899997521123687666038999999997356121056889999975
Q 004553 127 CTIMMYGPTGSGKSHTMFGCA----KQPGIVYKSLKDILGDESDNGEKIGFSTFVQVTVLEIYNEEIYDLLSSNNGGGFG 202 (745)
Q Consensus 127 ~tIfaYGqTGSGKTyTm~G~~----~~~GIipral~~LF~~~~~~~~~~~~~~~V~vS~~EIYnE~I~DLL~~~~~~~l~ 202 (745)
+||||||||||||||||+|+. .++|||||++++||..+.... ....|.|++||+|||||+|||||++... .+.
T Consensus 82 ~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~-~l~ 158 (355)
T 1goj_A 82 GTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSA--ANIEYTVRVSYMEIYMERIRDLLAPQND-NLP 158 (355)
T ss_dssp EEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSC--TTEEEEEEEEEEEEETTEEEETTSTTCC-SCC
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEECCEEEECCCCCCC-CCE
T ss_conf 2288889999986067515788776668706799999999987145--6850899999999978977884457667-852
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEE--------CC
Q ss_conf 5579999981599981312576349843437889999999986143334567588888410278756310--------56
Q 004553 203 IGWPKGSGSKVRLEVMGKKAKNATFISGIEAGKISKEIQKVEKRRIVKSTQCNERSSRSHCMIILDVPTV--------GG 274 (745)
Q Consensus 203 i~~~~~~~~~~~~~~~~~~~~~l~~v~v~s~~ev~~~l~~g~~~R~~~~T~~N~~SSRSH~If~I~v~~~--------~s 274 (745)
+++... .+.++.|++.+.+.++++++.+|..|.++|++++|.+|..|||||+||+|.+.+. .|
T Consensus 159 i~e~~~---------~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s 229 (355)
T 1goj_A 159 VHEEKN---------RGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSG 229 (355)
T ss_dssp EEEETT---------TEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEE
T ss_pred EEECCC---------CCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEE
T ss_conf 688589---------99960687799579999999999999752472334478987776099999999960688955665
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 01233157886300013443889898852001048899999997189-98446899820000123358988622899982
Q 004553 275 RLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANG-DSHVPFRDSKLTMLLQDSFEDDKSKILMVLCA 353 (745)
Q Consensus 275 ~L~lVDLAGSEr~~~t~~~g~~~k~E~~~IN~SL~aLg~vI~aL~~~-~~~VPyRdSKLTrLLqdsLgG~nskt~mI~~i 353 (745)
+|+|||||||||+.++++.|.+++ |+.+||+||++||+||.+|+.+ ..||||||||||+||||+||| |++|+||+||
T Consensus 230 kL~lVDLAGSEr~~~t~~~g~rl~-E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgG-ns~t~mI~~i 307 (355)
T 1goj_A 230 QLFLVDLAGSEKVGKTGASGQTLE-EAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG-NSRTTLIINC 307 (355)
T ss_dssp EEEEEECCCCSCCTTSSSCCCCTT-TTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTS-SCEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEEEE
T ss_conf 799998988774432466026678-88765167999999999986489998877557999999997289-9768999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89987878779998999881222158887887886
Q 004553 354 SPDPKEIHKTICTLEYGAKAKCIIRGPHTPDKIGA 388 (745)
Q Consensus 354 SP~~~~~~ETlsTLrfa~rak~I~~~p~~~~~~~~ 388 (745)
||+..+++||++||+||+|||+|+|+|.+|..+..
T Consensus 308 sP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~ 342 (355)
T 1goj_A 308 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342 (355)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCH
T ss_conf 96302699999999999997236677556787999
Done!