Citrus Sinensis ID: 004554
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | 2.2.26 [Sep-21-2011] | |||||||
| Q5SWD9 | 803 | Pre-rRNA-processing prote | yes | no | 0.907 | 0.841 | 0.377 | 1e-114 | |
| Q5XGY1 | 815 | Pre-rRNA-processing prote | N/A | no | 0.935 | 0.855 | 0.376 | 1e-114 | |
| Q5R434 | 805 | Pre-rRNA-processing prote | yes | no | 0.930 | 0.860 | 0.370 | 1e-111 | |
| Q2NL82 | 804 | Pre-rRNA-processing prote | yes | no | 0.935 | 0.866 | 0.367 | 1e-111 | |
| Q9VP47 | 814 | Pre-rRNA-processing prote | yes | no | 0.942 | 0.862 | 0.323 | 2e-93 | |
| Q19329 | 785 | Pre-rRNA-processing prote | yes | no | 0.868 | 0.824 | 0.310 | 2e-84 | |
| Q61WR2 | 788 | Pre-rRNA-processing prote | N/A | no | 0.916 | 0.866 | 0.304 | 7e-79 | |
| O13956 | 783 | Ribosome biogenesis prote | yes | no | 0.924 | 0.879 | 0.284 | 2e-63 | |
| Q54YA7 | 826 | Pre-rRNA-processing prote | yes | no | 0.335 | 0.302 | 0.422 | 6e-58 | |
| Q07381 | 788 | Ribosome biogenesis prote | yes | no | 0.893 | 0.845 | 0.260 | 8e-57 |
| >sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 277/734 (37%), Positives = 393/734 (53%), Gaps = 58/734 (7%)
Query: 27 TAAKD-KSRIG-KSDCNVAKGAKAARVQRNK--MLRDQKRLALLKEKRASSGIASPPRVI 82
+A +D K R+G K C K + QR++ LR QKR ++L EKR PP +
Sbjct: 26 SAQRDSKGRVGPKILCKKLKRQLSRIDQRHRASQLRKQKRESVLAEKRQLGSKDGPPHQV 85
Query: 83 VLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQ-------APHGDL 135
++ L + ++L + L Q GT LS S+ + L L+ A GDL
Sbjct: 86 LVVPLHSRISLPEAFK--LLQNEDLGTVYLSERGSTQSFMLLCPSLKHRWFFTYARPGDL 143
Query: 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT- 194
++MAKVAD + F+ DS G+ CLS + GLP+ + ++ L
Sbjct: 144 HTLLDMAKVADTILFLLDPLE--------GWDSTGDYCLSCLFAQGLPTYTLAVQGLSGF 195
Query: 195 DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLM 254
KK+ D +K + FPED K DT+ E L Q+ +R++R +L
Sbjct: 196 PPKKQIDARKKLSKMVEKRFPED-KLLLLDTQQESGMLLRQLANQKQRHLAFRDRRAYLF 254
Query: 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNAR 314
A D V + + TL + GY+R L+VN L+HI G GDFQ+ +I+ DPFPLN R
Sbjct: 255 AHVADFVPSEESDLVGTLKISGYVRGRTLNVNSLLHIVGHGDFQMNQIDAPVDPFPLNPR 314
Query: 315 ------KESDAME-------SDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPT 361
K + AME D DL+V+ + DP E L E +PDP+ GEQTWPT
Sbjct: 315 VIKSQKKPNMAMEVCVTDAAPDMEEDLKVL--MKADPDHQESLQTEAIPDPMEGEQTWPT 372
Query: 362 EAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRG 421
E E+ EAD K R + + +P+GTS YQA WI+D+ DE+D + G D + G
Sbjct: 373 EEELDEADDLLKQRSRVVKKVPKGTSSYQAEWILDEGDESDGEG------GEYDDIQHEG 426
Query: 422 FPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDE 481
F E + S ++++ + ++ + E + E E ++K K+ E E
Sbjct: 427 FMEEESQDGSGEEEEEECETMTLGESVRDD----LYDEKVDAEDEERMLEKYKQERLE-E 481
Query: 482 EFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA 541
FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F F T+K +F
Sbjct: 482 MFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFK 541
Query: 542 NALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLH 601
+ E E + YV LH+ +VP + + A PLIA LL +E KMSVL+
Sbjct: 542 EIEEKEAEGAE----VGWYVTLHVSDVPVSVVEYFRQGA---PLIAFSLLPYEQKMSVLN 594
Query: 602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
V ++ P+KAKEELIFH GFR+F A P+FS + +DKHK +RFL A V ++
Sbjct: 595 MVVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQ-HTAADKHKFQRFLTADAAFVVTV 653
Query: 662 YAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
+API FPP +++ K G+ ++ A G L S+DPDR+++K++VL+G+P ++ A+V
Sbjct: 654 FAPITFPPASVLLFKQRRNGMH-SLIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVV 712
Query: 722 RYMFHNPEDVRWFK 735
RYMF N EDV WFK
Sbjct: 713 RYMFFNREDVMWFK 726
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Required during maturation of the 40S ribosomal subunit in the nucleolus. Mus musculus (taxid: 10090) |
| >sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 287/762 (37%), Positives = 412/762 (54%), Gaps = 65/762 (8%)
Query: 3 GSRVQVNKSHKS-RFSTKSSR---NLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLR 58
G+ Q NK HKS R + ++ N + AAK + K D K R + +R
Sbjct: 13 GAYKQQNKPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLR-----KLDRRHKANQIR 67
Query: 59 DQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQL-SSEG--------- 108
Q++ A+L EKR+ PP +++ L A +V++DL + ++EG
Sbjct: 68 RQRKDAVLAEKRSLGTKDGPPHLVIAISLHA----RAVKDDLFSLVQNNEGDILHVNDQI 123
Query: 109 TGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDS 168
G L+ + K + R +QA DL +++AKVAD + F+ DS
Sbjct: 124 KGLLA--LVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQEG--------WDS 173
Query: 169 FGNQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKD 227
+G+ CLS + GLPS + ++ + +KKR D+KK + + F D K + DT+
Sbjct: 174 YGDYCLSCLFAQGLPSYVLAVQGMNYIPIKKRADIKKQLSKVIENRF-TDAKLFQLDTEQ 232
Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQ 287
E + Q+ +R++R +++AQ+ D D + TL L GY+R L+VN+
Sbjct: 233 EAAVLIRQISTQKQRHLAFRSRRSYMLAQRADFQPTDESGLVGTLKLSGYVRGQELNVNR 292
Query: 288 LVHISGAGDFQLGKIEILKDPFPLNAR------KESDAME-SDEI-------HDLEVIRT 333
LVHI G GDF + +I+ DP+PLN R K ME SDE D++V+
Sbjct: 293 LVHIVGHGDFHMSQIDAPPDPYPLNPRVHKPKTKSGQDMEMSDEPATGSEMEQDIKVL-- 350
Query: 334 LSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAW 393
+ DP E L E VPDP+ GEQTWPTE E+ EA+ K + + +P+GTS YQAAW
Sbjct: 351 MKADPSAQESLQCEVVPDPMEGEQTWPTEEELKEAEDALKGTSKVVKKVPKGTSAYQAAW 410
Query: 394 IVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDS 453
I+DD + + +SD+D D+ M D ED Y + +++ D T +D
Sbjct: 411 ILDDEGDGEEESDDDDDEDMEEDAEDAMDDAYSEEEDGSGNEEAEESETLTIPDSTRDDK 470
Query: 454 VMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSW 513
+ EQ E+++ + + +DE FPDEVDTP D AR RF KYRGLKSFRTS W
Sbjct: 471 Y----DENVDEQEEEQMLEKYKLQRQDEVFPDEVDTPRDQIARIRFQKYRGLKSFRTSPW 526
Query: 514 DPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIA 573
D KE+LP +YARIF F F RT+K VF E+E D+ YV +HI VP +
Sbjct: 527 DVKENLPRDYARIFQFHDFFRTRKRVFK-----EEEEKDEGAMVGWYVTVHISAVPVSV- 580
Query: 574 HRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARP 633
+ PL+ LL HE KMSV++ V++H + PIKAKEELIFH GFR+F A P
Sbjct: 581 --MEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPIKAKEELIFHCGFRRFRASP 638
Query: 634 IFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLR 693
+FS + ++DKHK ERFL + V ++YAPI FPP ++V K G+ V A GSL
Sbjct: 639 LFSQHS-SADKHKSERFLRSDTSVVVTVYAPITFPPASVLVFKQRYNGMQDLV-ATGSLL 696
Query: 694 SIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
+++PDRI++K+IVL+G+P ++ K A+VRYMF N EDV WFK
Sbjct: 697 NVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFK 738
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Required during maturation of the 40S ribosomal subunit in the nucleolus. Xenopus laevis (taxid: 8355) |
| >sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 282/762 (37%), Positives = 415/762 (54%), Gaps = 69/762 (9%)
Query: 3 GSRVQVNKSHKSRFSTKSSRNLHKTAAK--DKSRIGKSDCNVAKGAKAARV---QRNKML 57
G+ Q NK+HK R+ + +A+ K R+ + + +RV R L
Sbjct: 7 GTLKQQNKAHKG------GRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL 60
Query: 58 RDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVS 117
R QK+ A+L EKR G PP +++ L + ++L + L Q GT L+ +
Sbjct: 61 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQ--LLQDRDTGTVHLNELGN 118
Query: 118 SSKYRL-------RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFG 170
+ + L R A GDL ++MAKVAD + F+ DS G
Sbjct: 119 TQSFMLLCPRLKHRWFFTSARPGDLHIVLDMAKVADTILFLLDPLE--------GWDSTG 170
Query: 171 NQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
+ CLS + GLP+ + ++ + LKK+ D +K ++ FP D K DT+ E
Sbjct: 171 DYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDARKKLSKAVEKRFPHD-KLLLLDTQQEA 229
Query: 230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLV 289
L Q+ +R++R +L A+ VD VA + N+ TL + GY+R L+VN+L+
Sbjct: 230 GMLLRQLANQKQQHLAFRDRRAYLFARAVDFVASEENNLVGTLKISGYVRGQTLNVNRLL 289
Query: 290 HISGAGDFQLGKIEILKDPFPLNAR-----KESD-AME---SDEIHDLE--VIRTLSPDP 338
HI G GDFQ+ +I+ DPFPLN R K+ D AME +D + D+E + + DP
Sbjct: 290 HIVGHGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDTVDDMEEGLKVLMKADP 349
Query: 339 LKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS 398
+ E L E +PDP+ GEQTWPTE E++EA K + + +P+GTS YQA WI+D
Sbjct: 350 DRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGG 409
Query: 399 DEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEG 458
++ + D D M + ED + ++ + +++ ++ T +SV
Sbjct: 410 SQSGGEGDEYEYDDM--EHEDFMEEESQDESSEEEEEEYETM--------TIGESVH--- 456
Query: 459 EILTREQIEDE-----IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSW 513
+ L ++I++E ++K K+ E E FPDEVDTP DV AR RF KYRGLKSFRTS W
Sbjct: 457 DDLYDKKIDEEAEAKMLEKYKQERLE-EMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPW 515
Query: 514 DPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIA 573
DPKE+LP +YARIF F FT T+K +F + E E + YV LH+ E ++
Sbjct: 516 DPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGCYVTLHVSE--VPVS 569
Query: 574 HRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARP 633
C + +PLIA LL HE KMSVL+ V++ P+KAKEELIFH GFR+F A P
Sbjct: 570 VVEC-FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASP 628
Query: 634 IFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLR 693
+FS + +DKHK++RFL A VA++YAPI FPP +++ K G+ ++ A G L
Sbjct: 629 LFSQ-HTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMH-SLIATGHLM 686
Query: 694 SIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
S+DPDR+++K++VL+G+P ++ A+VRYMF N EDV WFK
Sbjct: 687 SVDPDRMVIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFK 728
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Required during maturation of the 40S ribosomal subunit in the nucleolus. Pongo abelii (taxid: 9601) |
| >sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 278/757 (36%), Positives = 402/757 (53%), Gaps = 60/757 (7%)
Query: 3 GSRVQVNKSHKSRFSTKSSRNLHKTAAK--DKSRIGKSDCNVAKGAKAARV---QRNKML 57
G Q NK+HK R+ + +A+ K R+ + + +RV R L
Sbjct: 7 GPLKQQNKAHKG------GRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL 60
Query: 58 RDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVS 117
R QK+ A+L EKR G PP +++ L + ++L + L Q GT L+ +
Sbjct: 61 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQ--LLQDRDTGTVHLNELGN 118
Query: 118 SSKYRL-------RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFG 170
+ + L R A GDL ++MAKVAD + F+ DS G
Sbjct: 119 TQNFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLE--------GWDSTG 170
Query: 171 NQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
+ CLS + GLP+ + ++ + LKK+ D +K ++ FP D K DT+ E
Sbjct: 171 DYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHD-KLLLLDTQQEA 229
Query: 230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLV 289
L Q+ +R++R +L A VD V + N+ TL + GY+R L+VN+L+
Sbjct: 230 GMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLL 289
Query: 290 HISGAGDFQLGKIEILKDPFPLNAR-----KESD-AME---SDEIHDLE--VIRTLSPDP 338
HI G GDFQ+ +I+ DPFPLN R K+ D AME +D + D+E + + DP
Sbjct: 290 HIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADP 349
Query: 339 LKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS 398
+ E L E +PDP+ GEQTWPTE E++EA K + + +P+GTS YQA WI+D
Sbjct: 350 GRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGG 409
Query: 399 DEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEG 458
++ + D D M + ED + ++ + ++ + D + V E
Sbjct: 410 SQSGGEGDEYEYDDM--EHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEA 467
Query: 459 EILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKES 518
E E+ + E +E FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+
Sbjct: 468 EAKMLEKYKQE--------RLEEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKEN 519
Query: 519 LPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCE 578
LP +YARIF F FT T+K +F + E E + YV LH+ E ++ C
Sbjct: 520 LPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE----VGWYVTLHVSE--VPVSVVEC- 572
Query: 579 MAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSD 638
+ +PLIA LL HE KMSVL+ V++ P+KAKEELIFH GFR+F A P+FS
Sbjct: 573 FRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQ- 631
Query: 639 NMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPD 698
+ +DKHK++RFL A VA++YAPI FPP +++ K G+ ++ A G L S+DPD
Sbjct: 632 HTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMH-SLIATGHLMSVDPD 690
Query: 699 RIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
R+++K++VL+G+P ++ A+VRYMF N EDV WFK
Sbjct: 691 RMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFK 727
|
Required during maturation of the 40S ribosomal subunit in the nucleolus. Homo sapiens (taxid: 9606) |
| >sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 244/755 (32%), Positives = 383/755 (50%), Gaps = 53/755 (7%)
Query: 3 GSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIG-KSDCNVAKGAKAARVQRNKM--LRD 59
G Q NK+HK T R+ K +IG + + K + +RN+M LR
Sbjct: 10 GPLKQANKAHK----TGRHRSKGAIDNAQKGKIGLRPISHKHKQQQRKEQRRNQMNQLRK 65
Query: 60 QKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLR---QLSSEGTGALSSTV 116
KR +L++KR G + P ++ L + ++ S E L +L E + + +
Sbjct: 66 NKREEVLEQKRKLGGQNTAPFLVCLLPMHEQIDPMSALEILKSCDSELVVENSPSGIVYI 125
Query: 117 SSSKYRLRTSVLQAP--HGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCL 174
+ +++ R + + P G+ + ++ KV D + +A+ F ++ + D +G +
Sbjct: 126 NLPRFKQRFAFVTPPVGRGNELIALDYLKVCDTTLLLTTAA-FGDDEI---FDRWGQRIF 181
Query: 175 SVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLW 234
++ + G+P+ V + DL + KR+ K + S+ + K DT E +
Sbjct: 182 NMMSAQGIPTPVVALMDLESINPKRRPAAKQAAQKVISKLLPEEKIMQLDTASEALNVMR 241
Query: 235 LFKEQRLTVPHWRNQRPFLMAQKVDV-VADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG 293
Q+ + H RP L V+ D + TL + G+LR L+VN LVHI G
Sbjct: 242 RIGGQKKRILHNVANRPHLFGDVVEFKPGSDPSDDLGTLEVTGFLRGQSLNVNGLVHIPG 301
Query: 294 AGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPL 353
GDFQL ++ DP+ L+ ++ E+ E+ L+ DP K L EN+PDP+
Sbjct: 302 LGDFQLSQVVAPPDPYKLDKSRDG---ENSEVRLLD-----RSDPSKRTSLQSENIPDPM 353
Query: 354 AGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSD-EADSDSDNDADDG 412
EQTWPTE E+A + K K KR +P+G SEYQAAWI D + E D+D
Sbjct: 354 DAEQTWPTEDEIAASQAETKKMKLVKR-VPKGYSEYQAAWIPDVEEVEDPDGKDDDDMSE 412
Query: 413 MVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTE--NDSVMMEGEILTREQIEDE- 469
D ++ + +N +D+ + D TE D+V + E ++ D+
Sbjct: 413 DDDDDKEDDNEDFMSCDNKSFEDE-----YEKRDSDTEEFQDTVSVASEAAINDEKYDQQ 467
Query: 470 ---------IKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLP 520
+KK+++A D+ +PDE+DTPLDVPAR+RF KYRGL+SFRTS WD KE+LP
Sbjct: 468 MDFQEERETLKKLQQART-DQLWPDEIDTPLDVPARERFQKYRGLESFRTSPWDAKENLP 526
Query: 521 PEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMA 580
+YARI+ F F RT++ + A + E V LYV L++ VP +
Sbjct: 527 ADYARIYQFQNFDRTKRRILNEAKEFE------GVLPGLYVTLYVINVPESRWNAFKSAQ 580
Query: 581 ERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNM 640
+I G+L HE +M V++ +++ + P+K+KE+LI G+R+FV PI+S +
Sbjct: 581 LMDNIIVYGMLPHEHQMCVMNVVLQRMPDSEVPLKSKEQLIIQCGYRRFVVNPIYSQ-HT 639
Query: 641 NSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRI 700
N DKHK ER+ A+ YAPI FPP P++ K + A+ A G L S +PDRI
Sbjct: 640 NGDKHKFERYFRPYETVCATFYAPIQFPPAPVLAFK-VNPDSTLALVARGRLLSCNPDRI 698
Query: 701 ILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
+LK++VL+G+P R+++ A +RYMF EDV +FK
Sbjct: 699 VLKRVVLSGHPMRINRKSASIRYMFFYKEDVEYFK 733
|
Required during maturation of the 40S ribosomal subunit in the nucleolus. Drosophila melanogaster (taxid: 7227) |
| >sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 227/730 (31%), Positives = 374/730 (51%), Gaps = 83/730 (11%)
Query: 18 TKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIAS 77
T+S+ + H+T +KD AR + KM RDQK ++ +R S+ +
Sbjct: 44 TRSAHSTHRTISKD-----------------ARRNQLKMARDQKMADAMERRRTSN---A 83
Query: 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSS------KYRLRTSVLQAP 131
P V V+ S+ + + + +++L++ + +T S+ +++ R S L
Sbjct: 84 PCLVTVV-----SLGVGARPTEFIKKLATCDETIIQTTSPSTIDFAIPRFKSRVSFLTPD 138
Query: 132 HGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRD 191
++ G ++ + +D++ F+ MS + + Q L++ ++ GLP+ ++
Sbjct: 139 KDNVDGVLDAIRASDVLCFLWP--------MSAELSEWDEQLLTIIKANGLPTIVSVVPG 190
Query: 192 LPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQ 249
L + + KK++D++K ++ + AD+ + + L + E + + +
Sbjct: 191 LGSIANHKKKEDVRKGIEFIISKWSMSNAGVMPADSVTDNLQLLRILNETKKKPLTLQAR 250
Query: 250 RPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPF 309
+++ + ++ D CTL+ GYLR + N LVH+ G GDFQ+ KIE DP
Sbjct: 251 HSYMLVENLE--CSDKTGETCTLVAQGYLRGPEWNANNLVHLPGFGDFQISKIESTVDPH 308
Query: 310 PLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEAD 369
PL A ++ + I S D K + E PD + GEQTWPT E+ EAD
Sbjct: 309 PLKAHNKTPEAQ---------IIAKSDD--KRQNTETEITPDSMDGEQTWPTREELEEAD 357
Query: 370 QNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTN 429
+ + R +P+GTS YQAAWI+DD D+ D + ++ D ++ + E +
Sbjct: 358 K-------ELRRVPKGTSSYQAAWILDDEDDEDEEDSDEDMDDSDNEEVEDDSEEEEPMD 410
Query: 430 NSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDT 489
+ + + + + DDG + D M E E +E+ E+ ++PDEVDT
Sbjct: 411 DLKSEAGETTASEMMFDDGIDEDINMAEVEKYRKER-------------ENAQWPDEVDT 457
Query: 490 PLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA--NALKME 547
P+D+PAR F KYRGLKSFRTS+WDPKE+LP +YARIF F + T+K+V + ++
Sbjct: 458 PMDMPARIAFQKYRGLKSFRTSTWDPKENLPLDYARIFQFANYRNTKKNVMSKIGGNDVD 517
Query: 548 QENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKH 607
+++ D + + I+ VP + L + L+ LL HE KMSVL+ +KKH
Sbjct: 518 ADSVADKKFNGAFASVFIENVPVAV---LEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKH 574
Query: 608 DTYDAPIKA--KEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPI 665
+ PI + ++ IF+VGFRQF A +FSS N DK K+ERF+ VA++YAPI
Sbjct: 575 PSCTIPITSDQNQKFIFYVGFRQFEANAVFSS-NTPGDKFKLERFMPTEKTFVATVYAPI 633
Query: 666 CFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMF 725
F P ++ + D G V A GS+ +PDRI+LK+ VL G+P ++++ +VRYMF
Sbjct: 634 TFNPATVLCFRQDDKGRQELV-ATGSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMF 692
Query: 726 HNPEDVRWFK 735
N ED+ WFK
Sbjct: 693 FNREDIEWFK 702
|
Required during maturation of the 40S ribosomal subunit in the nucleolus. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 229/753 (30%), Positives = 376/753 (49%), Gaps = 70/753 (9%)
Query: 2 TGSRVQV-NKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGA------KAARVQRN 54
TG R V K K S K R + +++ R G + + K AR +
Sbjct: 4 TGHRAGVFKKPAKPHKSWKGKRTKGEITTENRGREGVKQLTRSAHSTHRAVSKDARRNQL 63
Query: 55 KMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSS 114
KM RD+K ++ +R S+ +P V +L S+ + + + L++L++ + +
Sbjct: 64 KMARDRKMADAMERRRTSN---APCLVTIL-----SLGVGARPSEFLKKLATCDETIVQT 115
Query: 115 TVSSS------KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDS 168
S+ +++ R S L ++ ++ + +D++ F+ +S +
Sbjct: 116 HSPSTIDFAIPRFKSRISFLTPDKENVDSVLDAIRASDVLCFLWP--------LSAELSE 167
Query: 169 FGNQCLSVFRSLGLPSTAVLIRDLP--TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTK 226
+ Q L++ ++ GLP+ ++ L + KK++D++K +++ + AD+
Sbjct: 168 WDEQLLTICKAAGLPTIVSVVPGLGGIQNHKKKEDVRKGIEFTISKWSMSNAGVMPADSV 227
Query: 227 DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVN 286
+ + L E + + + +++ + ++ +S K TL GYLR + N
Sbjct: 228 TDNLQLLRTLNETKKKPLTLQARHSYMLVENLEATESPEDSSKITLKAQGYLRGPEWNAN 287
Query: 287 QLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLV 346
L+H+ G GDFQ+ KIE DP PL A EVI K + L
Sbjct: 288 NLIHLPGFGDFQISKIETAADPHPLKTSPPKGA---------EVIAKADE---KRQSLET 335
Query: 347 ENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSD 406
E D + GEQTWPT+ E+ EAD+ R +P+GTS YQAAWI+DDS++ + + D
Sbjct: 336 EITLDAMDGEQTWPTQEELEEADKEM-------RRVPKGTSSYQAAWILDDSEDDEDEED 388
Query: 407 NDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQI 466
D D + +D E D+ ++ G S MM + + +
Sbjct: 389 EDEDMDDEEEDKDLEEDDEEEDTPMDLK----------SEAGETTASEMMFHDEIDEDIN 438
Query: 467 EDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARI 526
E++K ++ E+ ++PDEVDTP+D PAR RF KYRGLKSFRTS+WD KE+LP +YARI
Sbjct: 439 LAEVEKYRKER-ENAQWPDEVDTPIDQPARIRFQKYRGLKSFRTSTWDAKENLPVDYARI 497
Query: 527 FAFDKFTRTQKHVFANALKMEQENMD---DSVPASLYVRLHIKEVPAGIAHRLCEMAERS 583
F F + T+K+V + + + D D ++ ++I+ VP + + E
Sbjct: 498 FQFANYKNTKKNVMSKIGGNDVDAGDAVIDKKFNGVFASVYIENVPVSV---MEAYKETK 554
Query: 584 PLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEE-LIFHVGFRQFVARPIFSSDNMNS 642
L+ LL HE KMS+L+ +KKH + PI ++++ IF+VGFRQF A + SS N
Sbjct: 555 NLVLFQLLPHEQKMSILNMVLKKHPSCTVPIGSEDQKFIFYVGFRQFEAHAVLSS-NTPG 613
Query: 643 DKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIIL 702
DK K+ERF+ VA++YAPI F P ++ + D G V A GS+ +PDRI+L
Sbjct: 614 DKFKLERFMPTEKTFVATVYAPITFNPATVLCFRQDDKGRQELV-ATGSVLDTNPDRIVL 672
Query: 703 KKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
K+ VL+G+P ++++ +VRYMF N ED+ WFK
Sbjct: 673 KRTVLSGHPYKINRRAVVVRYMFFNREDIDWFK 705
|
Required during maturation of the 40S ribosomal subunit in the nucleolus. Caenorhabditis briggsae (taxid: 6238) |
| >sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 216/759 (28%), Positives = 365/759 (48%), Gaps = 70/759 (9%)
Query: 4 SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRL 63
S + K KS+ ++KSS + R G + V KA R K ++ KR
Sbjct: 7 STFKAKKPFKSKHASKSSLKEKYKNEVEPHRSGPKNI-VHTSTKADRRNTAKQIQLNKRT 65
Query: 64 ALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT----GALSSTVSSS 119
+ R G P+VI + L +V+ +V +LLR + E + S + S++
Sbjct: 66 EVAMNNRIFGGKNGAPKVITIVPLCNNVDSWNVLTNLLRSIDPEASLPKFDKDSISYSTT 125
Query: 120 KYRLRTSVL-QAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR 178
R + ++L P + ++ KV+D V FV SA +D FG + +
Sbjct: 126 IDRFKQNLLFLLPKREFYSLIDACKVSDYVIFVLSAVQ--------EVDEFGELIVRTTQ 177
Query: 179 SLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAAD-TKDELHKFLWL 235
G+ S ++ DL LK R ++KK S + F + + +AAD ++D L+ L
Sbjct: 178 GQGISSVLSMVHDLSEVDSLKTRNEVKKSLQSFMNFFFSDQERVFAADVSQDALNVMRAL 237
Query: 236 FKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295
+ HWR+ R +L++Q++ LL+ G +R L N+L+HI G G
Sbjct: 238 CTSHPRGI-HWRDSRSYLLSQEISY-------SNGNLLVRGIVRGKGLDPNRLIHIQGFG 289
Query: 296 DFQLGKIEILKDPFPLNARKESDAMESDEIHDLE--VIRTLSPDPLK--LEPLLVENVPD 351
DF + +I + P + S + DE +L ++ SP + LE L
Sbjct: 290 DFAINRI--YEAP---QGIQNSRGISMDEDTNLTGGLVELCSPTQEQDSLESLGPIIDDM 344
Query: 352 PLAGEQTWPTEA-------EMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSD 404
+ EA + D ++ KR +P+GTS YQA WI D+ +E+D
Sbjct: 345 DTDMDSEVGKEASRGVRLDDFYYFDDEEEPVAVAKR-VPKGTSTYQATWIPDEDEESDQY 403
Query: 405 SDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTRE 464
SD + + ++ DQ+++ + D D+++ DD + ++
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEET------IDDA--KSEMFVDLSEEEEV 455
Query: 465 QIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPP 521
+ +E +K ++ E+ EFPDEV+ + AR+RF KYRGL+S TS WD E + P
Sbjct: 456 RQYEEYRKKQKELQEELEFPDEVELQPNELARERFKKYRGLRSLYTSQWDADEYDPNEPR 515
Query: 522 EYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPA-SLYVRLHIKEVPAGIAHRLCEMA 580
E+ ++F F+ + R K+ F ++Q + ++ P ++YV L + VP I +
Sbjct: 516 EWRQLFKFENY-RNLKNKF-----LKQPFIGEAKPGKAVYVEL--RNVPIEIFEYYNK-- 565
Query: 581 ERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFS---S 637
+ L+ LLQ+E+K++V F+ +H Y+ PI++KEEL+ +G R+F+ RP++S +
Sbjct: 566 PWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPIESKEELLLQIGPRRFMVRPLYSDPTA 625
Query: 638 DNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVL-KSADGGVAPAVAAVGSLRSID 696
+++ K R+L +AS+ +PI F +P+I+ KS+D + +AA GS + D
Sbjct: 626 SGASNNLQKYHRYLPPKQAVIASVISPIVFGNVPIIMFKKSSDNSL--RLAATGSYVNCD 683
Query: 697 PDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
+ +I K+ VLTG+P +V K +RYMF NPEDV WFK
Sbjct: 684 TNSVIAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIWFK 722
|
Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 167/265 (63%), Gaps = 15/265 (5%)
Query: 474 KEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFT 533
K+ ++ +PDEVDTP +VP+R RF+K+RGLKSFR+S WD KE+LP +YA+IF F F
Sbjct: 513 KQLQQDEILYPDEVDTPGNVPSRIRFSKFRGLKSFRSSPWDVKENLPIDYAKIFQFHSFN 572
Query: 534 RTQKHVFANALKMEQENMDDSVPAS--LYVRLHIKEVPAGIAHRLCEMAERSPLIASGLL 591
++ + A + D+ PA +YVR+H+ P + R P +A GL
Sbjct: 573 QSMRASIA---------ILDNAPAKPDMYVRIHLVNGPKQLVERNTTAITTKPEVAVGLY 623
Query: 592 QHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFL 651
++E+K+S+LHFSV+KH +Y+ +++KEE+ FH G+R+F PI+S + N DK K E+FL
Sbjct: 624 RYENKISLLHFSVEKHKSYEETVRSKEEVYFHFGWRKFSTSPIYSISSPNCDKQKFEKFL 683
Query: 652 HAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTG-Y 710
++A+IY PI +PP PL++ D + A G L S++PDRII K+I+LTG
Sbjct: 684 LPARNTMATIYGPITYPPAPLLIFNGKDCN---ELVATGYLSSVNPDRIICKRIILTGVI 740
Query: 711 PQRVSKLKAIVRYMFHNPEDVRWFK 735
+ +SK V+ MF+ PED+ WFK
Sbjct: 741 AKSISKKFVTVKDMFYYPEDINWFK 765
|
Required during maturation of the 40S ribosomal subunit in the nucleolus. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 203/779 (26%), Positives = 336/779 (43%), Gaps = 113/779 (14%)
Query: 9 NKSHKSRFSTKSS-RNLHK-TAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALL 66
+KS+KS+ ++K + + L+K K+ GK D V+K R + K LR Q+ L +
Sbjct: 14 HKSYKSKHASKGALKRLYKGKVEKEPVGTGKPDKQVSK---LQRKNKAKQLRAQRILDSI 70
Query: 67 KEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSS------TVSSSK 120
+ ++ G ++I + L ++ + LL+ EG V K
Sbjct: 71 ENRKLFEGKNGAAKIITIVPLVNDLDPLDILYKLLKCADDEGIMVQEVDSKRIFNVHIKK 130
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
++ ++ + + ++ AKVAD V F S +E FG Q +
Sbjct: 131 FKSNLKIIIPDMTNFLNILDCAKVADFVVFGLSGVQEVDEE-------FGEQIIRALELQ 183
Query: 181 GLPSTAVLIRDLPTDLKKRK---DLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFK 237
G+ S +I +L +K K D+K+ S FP + + Y + + L
Sbjct: 184 GIASYIGVISNLSAVHEKEKFQLDVKQSLESYFKHFFPSEERVYNLEKNSDALNVLRTLC 243
Query: 238 EQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDF 297
++ +WR+ R +++A VD V +SG L++ G +R + N+LVHI GDF
Sbjct: 244 QRLPRSINWRDNRGYVVADFVDFVETSPDSG--DLVIEGTVRGIGFNANRLVHIPDFGDF 301
Query: 298 QLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLE-------------PL 344
QL KIE + S+ ++I+ + D L LE
Sbjct: 302 QLNKIEKI----------------SESSQKRKIIKEKATDSLSLELDLQTVFESNMNRDT 345
Query: 345 LVENVPDPLAGEQTWPTEAEMAEADQNQKHR------------KQKKRALPRGTSEYQAA 392
L E P+ G + W E E D R KK A+P+GTS+YQA
Sbjct: 346 LDEYAPE---GTEDWSDYDEDFEYDGLTTARYDDHGFLPGREQTSKKAAVPKGTSDYQAK 402
Query: 393 WIVDD----SDEADSDSDN-------DADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLN 441
W +DD ++E +++ N + DD M+++Q++ G E DI+D
Sbjct: 403 WYLDDVIDANEEEEAEQTNGKDETMMEIDDEMMVEQDNEEVAGDE---EYDIED------ 453
Query: 442 FRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAK 501
N+ Q+ ++ ++ ED EFPDE++ A +R +
Sbjct: 454 ---------NEGFEELSPEEEERQL----REFRDMEKEDREFPDEIELEPSESAIERLKR 500
Query: 502 YRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPAS 558
YRGLK+ W E S P E+ R+ + T+ + Q D +
Sbjct: 501 YRGLKNLYNCDWQVDEKDPSSPAEWKRLLRIGNYKNTKNRIIKETKNEAQAIAGDRI--R 558
Query: 559 LYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKE 618
+++R P + ++ + ++ GLL HE K +V++FS+++ + YD P+ ++E
Sbjct: 559 MFIRF-----PKFLLEKIQD-PKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPVPSQE 612
Query: 619 ELIFHVGFRQFVARPIFS-SDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLK- 676
++ G R++ +P+FS N ++ HK ERFLH SVA+ AP+ F P I K
Sbjct: 613 PIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFKP 672
Query: 677 SADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
S + G+ + D RI+ K+ +LTG+P R K VRYMF PEDV WFK
Sbjct: 673 SPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFK 731
|
Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| 255539194 | 792 | ribosome biogenesis protein tsr1, putati | 0.982 | 0.924 | 0.761 | 0.0 | |
| 225457538 | 801 | PREDICTED: pre-rRNA-processing protein T | 0.986 | 0.917 | 0.759 | 0.0 | |
| 224086026 | 798 | predicted protein [Populus trichocarpa] | 0.986 | 0.921 | 0.760 | 0.0 | |
| 18400634 | 793 | uncharacterized protein [Arabidopsis tha | 0.983 | 0.924 | 0.698 | 0.0 | |
| 297841055 | 792 | hypothetical protein ARALYDRAFT_894100 [ | 0.982 | 0.924 | 0.697 | 0.0 | |
| 356508752 | 792 | PREDICTED: pre-rRNA-processing protein T | 0.983 | 0.925 | 0.718 | 0.0 | |
| 297852102 | 799 | hypothetical protein ARALYDRAFT_473739 [ | 0.966 | 0.901 | 0.671 | 0.0 | |
| 449487337 | 795 | PREDICTED: LOW QUALITY PROTEIN: pre-rRNA | 0.969 | 0.908 | 0.675 | 0.0 | |
| 449445642 | 795 | PREDICTED: pre-rRNA-processing protein T | 0.969 | 0.908 | 0.675 | 0.0 | |
| 356517386 | 792 | PREDICTED: pre-rRNA-processing protein T | 0.983 | 0.925 | 0.704 | 0.0 |
| >gi|255539194|ref|XP_002510662.1| ribosome biogenesis protein tsr1, putative [Ricinus communis] gi|223551363|gb|EEF52849.1| ribosome biogenesis protein tsr1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/735 (76%), Positives = 644/735 (87%), Gaps = 3/735 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M GSR QVNK+HKSRFS+KS+RNLHKT+ +DK+RI KS+ N AKGA+A R+QRNKMLR+Q
Sbjct: 1 MGGSRAQVNKAHKSRFSSKSTRNLHKTSLRDKNRIAKSERNAAKGARAVRIQRNKMLREQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR ALLKEKRAS G +SPPRVIVLFGLSASVN++S+ EDLL+ LS EG A+SSTV+SS+
Sbjct: 61 KRAALLKEKRASGGSSSPPRVIVLFGLSASVNIDSLAEDLLQLLSPEGGAAVSSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
Y++R +VL+APHGDL+ CMEMAKVADL+AFVASAS EES S YIDSFG+QCLSVFRSL
Sbjct: 121 YKMRATVLKAPHGDLLSCMEMAKVADLIAFVASAS---EESASDYIDSFGSQCLSVFRSL 177
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPSTAV IRDLPTDLK++ DLKKM S+L SEFPEDCKFY ADTKDELHKFLWLF+EQR
Sbjct: 178 GLPSTAVFIRDLPTDLKRKNDLKKMFTSNLASEFPEDCKFYPADTKDELHKFLWLFREQR 237
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
LT+PHWRNQRP+LM+QKV VAD+ N GKCTLLL GYL LSVNQLVH+SGAGDFQL
Sbjct: 238 LTLPHWRNQRPYLMSQKVTTVADNGNLGKCTLLLTGYLHGRSLSVNQLVHVSGAGDFQLQ 297
Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
IEILKDP PLN RKE D MESD++ D+EV+R++ PDPL EP+LVENVPDPLAGEQTWP
Sbjct: 298 NIEILKDPSPLNPRKELDLMESDDVRDVEVVRSIDPDPLTQEPVLVENVPDPLAGEQTWP 357
Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
TEAEM EA++ Q+ ++ KKR LPRGTSEYQAAWIVDD D+ SDS +D++DGMVLD+ +
Sbjct: 358 TEAEMEEANKVQEEKRLKKRILPRGTSEYQAAWIVDDLDDDGSDSGSDSEDGMVLDETES 417
Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
PG EG + S+IDDDQ+SL+ R +D+ TEN SVMMEGE LTREQIEDEI+K+KEAHAED
Sbjct: 418 YGPGLEGVDASEIDDDQSSLDLRNSDEETENASVMMEGENLTREQIEDEIRKLKEAHAED 477
Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
EEFPDEV+TPLD+PARKRFAKYRGLKSFRTS+WDPKESLPPEYARIFAFD F +TQKHVF
Sbjct: 478 EEFPDEVETPLDIPARKRFAKYRGLKSFRTSAWDPKESLPPEYARIFAFDNFAKTQKHVF 537
Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
A AL+++Q+N+D +PA YVRLHIKE+P +A +LC +A P+IA GLLQHESKMSVL
Sbjct: 538 AKALEIDQDNLDGCIPAGHYVRLHIKEIPTIVASKLCTLANTLPIIACGLLQHESKMSVL 597
Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
HFS+KKHDTYDAPIK+KEELIFHVGFRQFVARPIFS+DN+NSDKHKMERFLHAG FSVAS
Sbjct: 598 HFSIKKHDTYDAPIKSKEELIFHVGFRQFVARPIFSTDNINSDKHKMERFLHAGQFSVAS 657
Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
IYAPI FP LPL+VLK A+GG AP +AAVGSLRSIDPDR ILK+I+LTGYPQRVSKLKA
Sbjct: 658 IYAPISFPSLPLVVLKHAEGGAAPTLAAVGSLRSIDPDRTILKRIILTGYPQRVSKLKAS 717
Query: 721 VRYMFHNPEDVRWFK 735
VRYMFHNPEDVRWFK
Sbjct: 718 VRYMFHNPEDVRWFK 732
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457538|ref|XP_002270499.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Vitis vinifera] gi|297745545|emb|CBI40710.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/741 (75%), Positives = 639/741 (86%), Gaps = 6/741 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M GSRVQVNK+HK+RFS+KSSR +HKT+ ++KSRI K NVAKGAKAAR+QRNKM+RDQ
Sbjct: 1 MGGSRVQVNKAHKTRFSSKSSRQVHKTSLQEKSRITKPGSNVAKGAKAARLQRNKMIRDQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKRASSG SPPRVIV+FGLSASVN+NSV +DLL LSS+G + STV+SS+
Sbjct: 61 KRAAILKEKRASSGSTSPPRVIVIFGLSASVNVNSVEDDLLTLLSSKGNEPVFSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMS-YYIDSFGNQCLSVFRS 179
Y+LRT+VL+APHGDL C+EM KVADL+AFVASAS EE S YYIDSFG QCLSVFR+
Sbjct: 121 YKLRTTVLKAPHGDLSSCIEMVKVADLIAFVASASCSCEEGTSNYYIDSFGTQCLSVFRA 180
Query: 180 LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
LGLPST VLIRDLP + K+R +LKKMC SSL+SEFPEDCKFY ADTKDELHKF+WLFKEQ
Sbjct: 181 LGLPSTVVLIRDLPPEQKQRHELKKMCSSSLSSEFPEDCKFYPADTKDELHKFMWLFKEQ 240
Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
RL+VPHWRNQR +LMAQKVD+V DDCNSG CTLLL GYLRAH LSVNQLVHISGAGDFQL
Sbjct: 241 RLSVPHWRNQRSYLMAQKVDLVPDDCNSGNCTLLLTGYLRAHGLSVNQLVHISGAGDFQL 300
Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTW 359
KIEILKDPFPLNARK D M+SDE++D +VIR+L+PD LK EPL++ENVPDPLAGEQTW
Sbjct: 301 SKIEILKDPFPLNARKGQDLMDSDELNDEQVIRSLAPDKLKQEPLIIENVPDPLAGEQTW 360
Query: 360 PTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDS--DEADSDSDNDADDGMVLDQ 417
PTEAEMAEAD+NQK + KKR LPRGTSEYQAAWIVDD+ +++D D+DA DGMVLD+
Sbjct: 361 PTEAEMAEADRNQKQKNLKKRILPRGTSEYQAAWIVDDTDVEDSDRSDDDDAGDGMVLDE 420
Query: 418 EDRGFPGYEGTNNSDIDDDQASLNF--RYADDGTENDSVMMEGEILTREQIEDEIKKIKE 475
+ PG+EG NN D+DDDQASL+ R D+ T+ DSVMMEGE LTREQIEDEIKK+K+
Sbjct: 421 NESCLPGHEGNNNFDLDDDQASLSLDSRDNDEQTDVDSVMMEGENLTREQIEDEIKKLKD 480
Query: 476 AHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRT 535
AHAEDEE+PDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIF+FD F RT
Sbjct: 481 AHAEDEEYPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFSFDNFART 540
Query: 536 QKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHES 595
QKHV A AL MEQ MDD +PA Y+RLHI+EVP +A +LC + +R P+IA GLLQHE
Sbjct: 541 QKHVLAKALDMEQGYMDDCLPAGTYIRLHIREVPVSVASKLCMLGKRMPVIACGLLQHEC 600
Query: 596 KMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGC 655
KMSVLHFS+KKHD YDAPIK+KEEL+FHVGFRQFV RPIFSSDNMNSDKHKME+FLHAG
Sbjct: 601 KMSVLHFSIKKHDAYDAPIKSKEELVFHVGFRQFVVRPIFSSDNMNSDKHKMEKFLHAGR 660
Query: 656 FSVASIYAPICFPPLPLIVLKSA-DGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRV 714
FS+AS+YAPI F PLPLI LKS D +PAV A GSLR +DPDRIILKKI+LTGYPQRV
Sbjct: 661 FSIASVYAPISFTPLPLIALKSVNDVAASPAVVAFGSLRCVDPDRIILKKIILTGYPQRV 720
Query: 715 SKLKAIVRYMFHNPEDVRWFK 735
SKLKA VRYMFH+P+DVRWFK
Sbjct: 721 SKLKAAVRYMFHSPDDVRWFK 741
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086026|ref|XP_002307783.1| predicted protein [Populus trichocarpa] gi|222857232|gb|EEE94779.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1146 bits (2964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/738 (76%), Positives = 637/738 (86%), Gaps = 3/738 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M GSR Q+NK HKSRFSTKSSRNLHKT+ KDKSRI KS+ NVAKGA+AAR+QRNKMLR+Q
Sbjct: 1 MGGSRAQLNKPHKSRFSTKSSRNLHKTSLKDKSRIAKSERNVAKGARAARLQRNKMLREQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
K+ ALLKEKRASS S P VI+LFGLSASVN+ S+ EDLLR LS++G G +SSTV+SS+
Sbjct: 61 KKAALLKEKRASSSSTSAPLVILLFGLSASVNVESLAEDLLRVLSNDGAGDVSSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMS--YYIDSFGNQCLSVFR 178
Y++R +VL+APHG+L+ CMEMAKVADL+AFVAS +S EE+ S YIDSFG+QCLSVFR
Sbjct: 121 YKMRITVLKAPHGNLLSCMEMAKVADLIAFVASTNSLYEENASDFGYIDSFGSQCLSVFR 180
Query: 179 SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKE 238
LGLP+T V +RDLP+DLK + +LKKM IS+L EFPEDCKFY ADTKDELHKFLWLFKE
Sbjct: 181 QLGLPNTVVFLRDLPSDLKGKNELKKMSISNLAGEFPEDCKFYPADTKDELHKFLWLFKE 240
Query: 239 QRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQ 298
QRLTVPHWRNQRP+LM+QKVDVVAD+ NSGKCTLLL GYL AH LSVNQLVH+SGAGDFQ
Sbjct: 241 QRLTVPHWRNQRPYLMSQKVDVVADELNSGKCTLLLTGYLHAHSLSVNQLVHVSGAGDFQ 300
Query: 299 LGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
L KIEILKDP PL RKESDAM+SD++ D+EV+R+L PD + EPL+VENV DPLAGEQT
Sbjct: 301 LQKIEILKDPNPLKLRKESDAMDSDDVIDVEVVRSLDPDSMTQEPLVVENVLDPLAGEQT 360
Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
WPTEAEM EAD+NQK ++ KKR LPRGTSEYQAAWI+D++D+ S S +D DDGMVLD+
Sbjct: 361 WPTEAEMDEADRNQKQKRLKKRILPRGTSEYQAAWILDETDDEGSASGSDTDDGMVLDET 420
Query: 419 DRGFPGYEGTNNSDIDDDQASLNF-RYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
+ F G + TNNSD+DDD + R AD+ T+ DSVMME + LT+EQIE+EIKKIK AH
Sbjct: 421 EGYFRGPKETNNSDVDDDDQASLDDRDADEETDTDSVMMEDDNLTKEQIEEEIKKIKAAH 480
Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
AEDEE+PDEVDTPLD PARKRF KYRGLKSFRTSSWDPKESLPPEYARIFAFDKF +TQK
Sbjct: 481 AEDEEYPDEVDTPLDNPARKRFTKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFAKTQK 540
Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
HV A L MEQEN D VPA Y RLHIKEVP +A +LC +A+ P+IASGL QHESKM
Sbjct: 541 HVIAKFLDMEQENRYDCVPAGQYARLHIKEVPTPVASKLCLLAKTVPIIASGLFQHESKM 600
Query: 598 SVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFS 657
SVLHFS+KKHDTYDAPIKAKEEL+FHVGFRQFVARP+FS+D+MNSDKHKMERFLHAG FS
Sbjct: 601 SVLHFSIKKHDTYDAPIKAKEELVFHVGFRQFVARPVFSTDDMNSDKHKMERFLHAGRFS 660
Query: 658 VASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKL 717
VASIYAPI FPPLPLIVLKSA+G APA+AAVGSLRSIDPDRIILKKIVLTGYPQRVSKL
Sbjct: 661 VASIYAPISFPPLPLIVLKSAEGSAAPAIAAVGSLRSIDPDRIILKKIVLTGYPQRVSKL 720
Query: 718 KAIVRYMFHNPEDVRWFK 735
KA VRYMFH+PEDVRWFK
Sbjct: 721 KASVRYMFHSPEDVRWFK 738
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18400634|ref|NP_564480.1| uncharacterized protein [Arabidopsis thaliana] gi|13605690|gb|AAK32838.1|AF361826_1 At1g42440/F7F22_7 [Arabidopsis thaliana] gi|22137072|gb|AAM91381.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis thaliana] gi|332193797|gb|AEE31918.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/736 (69%), Positives = 616/736 (83%), Gaps = 3/736 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M SRVQVNK+HK+RFS+KSSRNLH+T +D RIGKSD N KGAKAARVQR KMLR+Q
Sbjct: 1 MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKRAS GI S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G SSTV+SS+
Sbjct: 61 KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
Y+LR +VL+APHGDL+ CMEMAKVADL+AFVASAS+ EE+ S +IDSFG+QCLSVFRS+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY ADT+DELHKF+WLFK QR
Sbjct: 181 GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR 240
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
LTVPHWR+QR +++A+K ++ DD +SGKCTLLL GYLRA LSVNQLVH+SG GDFQ
Sbjct: 241 LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS 300
Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
KIE+LKDPFPLN RK ++ME D+ HD EV+++L PDP+K EPL++EN PDPLAGEQTWP
Sbjct: 301 KIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWP 360
Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
TE EMAEAD+NQK + KK+ LPRGTSEYQAAWIVD++DE DSD+ + D+GMVLD+ +
Sbjct: 361 TEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED 420
Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
EG + + +DD SLN R D T+N+S M++ E LT EQI+DEIKKIKEA+A+D
Sbjct: 421 S--NQEGMYDQEFEDDGKSLNLRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYADD 478
Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
EEFPDEV+TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP +YARIFAFD RTQK V
Sbjct: 479 EEFPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLVL 538
Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERS-PLIASGLLQHESKMSV 599
ALKME+E+ DD VP YVRLHIKEVP G A +L + + P+I GLLQHESKMSV
Sbjct: 539 KQALKMEEEDRDDCVPIGSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMSV 598
Query: 600 LHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVA 659
LHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+F++DN +SDKHKMERFLH GCFS+A
Sbjct: 599 LHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSLA 658
Query: 660 SIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKA 719
SIY PI FPPLPL+VLK ++G PA+AA+GSL+S++P++IILKKI+LTGYPQRVSK+KA
Sbjct: 659 SIYGPISFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMKA 718
Query: 720 IVRYMFHNPEDVRWFK 735
VRYMFHNPEDV+WFK
Sbjct: 719 SVRYMFHNPEDVKWFK 734
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841055|ref|XP_002888409.1| hypothetical protein ARALYDRAFT_894100 [Arabidopsis lyrata subsp. lyrata] gi|297334250|gb|EFH64668.1| hypothetical protein ARALYDRAFT_894100 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/736 (69%), Positives = 608/736 (82%), Gaps = 4/736 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCN-VAKGAKAARVQRNKMLRD 59
M SR+QVNK+HK+RF++KSSRNLH+T+ +D RIGKSD N KGAKAAR QR KMLR+
Sbjct: 1 MGNSRIQVNKAHKTRFTSKSSRNLHRTSLQDSCRIGKSDSNNYVKGAKAARFQRGKMLRE 60
Query: 60 QKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSS 119
QKR +LKEKRAS G+ S PRVIVLF LSASV L+S+ EDLL LSS+G+G SSTV+SS
Sbjct: 61 QKRATVLKEKRASGGLNSAPRVIVLFPLSASVELDSLNEDLLELLSSDGSGVTSSTVASS 120
Query: 120 KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS 179
+Y+L+ +VL+APHGDL+ CMEMAKVADL+AFVASASS EE+ S YIDSFGNQCLSVFRS
Sbjct: 121 EYKLKATVLKAPHGDLLTCMEMAKVADLMAFVASASSPWEENKSNYIDSFGNQCLSVFRS 180
Query: 180 LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
+GLPST VLIRDLP++LKK+ +LKK+C S L SEFPEDCKFY ADT+DELHKF+WLFK Q
Sbjct: 181 IGLPSTTVLIRDLPSELKKKNELKKICASQLASEFPEDCKFYPADTRDELHKFMWLFKAQ 240
Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
RLTVPHWR+QRP+++AQKV ++ DD +SGKCTLLL GYLRA LS+NQLVH+SG GDFQ
Sbjct: 241 RLTVPHWRSQRPYVVAQKVGMLVDDESSGKCTLLLSGYLRARKLSINQLVHVSGVGDFQF 300
Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTW 359
KIE+L DPFPLN RK ++ME D +HD EV+ +L PDP+K EPL+VEN PDPLAGEQTW
Sbjct: 301 SKIEVLNDPFPLNERKNQNSMELDALHDEEVLNSLVPDPIKQEPLVVENTPDPLAGEQTW 360
Query: 360 PTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQED 419
PTE EMAEAD+NQK K KK+ LPRGTSEYQAAWIVDD+DE DSD + D+GMVLD+E+
Sbjct: 361 PTEEEMAEADKNQKQGKLKKKTLPRGTSEYQAAWIVDDTDEEDSDIGDSDDNGMVLDREE 420
Query: 420 RGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAE 479
E + + +DD+ SLN R D GT+NDS MM+ E LT EQI+DEIKKIKEAHA+
Sbjct: 421 DA--NEERKYDQEFEDDEKSLNVRDFDSGTQNDSEMMDDEDLTDEQIKDEIKKIKEAHAD 478
Query: 480 DEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHV 539
DEEFPDEV+TP+DVPAR+ FAKYRGLKSFRTSSWDP ESLP +YARIFAFD RTQK V
Sbjct: 479 DEEFPDEVETPIDVPARRCFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLV 538
Query: 540 FANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSV 599
ALKME+E+ DD V YVRLHIKEVP G A +L + P+I L+QHE +MSV
Sbjct: 539 LKQALKMEEEDRDDCVQTGSYVRLHIKEVPLGAASKLSSLVNTKPIIGFRLIQHEIQMSV 598
Query: 600 LHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVA 659
LHFSVKK+D Y+APIK KEEL+FHVGFRQ +ARP+FS+DN +SDKHKMERFLH+G FS+A
Sbjct: 599 LHFSVKKYDGYEAPIKTKEELMFHVGFRQVIARPVFSTDNFSSDKHKMERFLHSGSFSLA 658
Query: 660 SIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKA 719
SIY PI FPPLPL+ LK ++G PAVAA+GSL+SI+P++IILKKI+LTGYPQRVSK+KA
Sbjct: 659 SIYGPISFPPLPLVALKISEGS-DPAVAALGSLKSIEPNKIILKKIILTGYPQRVSKMKA 717
Query: 720 IVRYMFHNPEDVRWFK 735
VRYMFHNPEDV+WFK
Sbjct: 718 SVRYMFHNPEDVKWFK 733
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508752|ref|XP_003523118.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/735 (71%), Positives = 612/735 (83%), Gaps = 2/735 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M GSRVQVNK HKSRFS+KSSRNLHKT+ KD+ I KS+ NV KGA+AAR+QRNKM+RDQ
Sbjct: 1 MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKR SG SPPRVIVLF L ASV+L S+ +DLL LS + LS TV+SS+
Sbjct: 61 KRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
YR R +VL+APHGDL+ CMEMAKVADL+ FVASA S EE+ SYYIDSFGNQCLSVFRSL
Sbjct: 121 YRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSL 180
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPSTAV IRDL TDLK+R +LKKMC SSL SEFPEDCKFY ADTKDELHKFLWLFKEQR
Sbjct: 181 GLPSTAVFIRDLSTDLKQRNELKKMCTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQR 240
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
L VPHWR QR +L++QKVD D NS KCTL L GYLR+ LSVNQLVH+SGAGDFQL
Sbjct: 241 LKVPHWRTQRSYLLSQKVDAEYDG-NSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLS 299
Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
KIE+LKDP PLN+RK D M++DE+HD EVI +L+PDP E L+VEN+PDPLAGEQTWP
Sbjct: 300 KIEVLKDPCPLNSRKNQDLMDADEMHDAEVIGSLAPDPQNQEALVVENIPDPLAGEQTWP 359
Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
TEAE+A+AD+++K +K KKR+LP GTSEYQAAWIVDDSDE +SD DN+ DDGMVLD+ +
Sbjct: 360 TEAEIAKADEDKKKKKIKKRSLPHGTSEYQAAWIVDDSDEEESDCDNENDDGMVLDEGED 419
Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
GFPG E SD D D ASL +D+ T+ DSVMME + LTRE+IEDE+K++KEAHA D
Sbjct: 420 GFPGQE-NRYSDFDGDGASLRLGDSDEETDIDSVMMEVDNLTREKIEDELKELKEAHAAD 478
Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLP +YARIF FD F RTQKHV
Sbjct: 479 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVL 538
Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
A AL+++QEN +D +P Y RLHI VP+ +A +L +A+ P+ A GLL+HESK+SVL
Sbjct: 539 AKALELDQENREDCIPVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVL 598
Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
HFSVKKH+TYDAPIK+KEELIFHVGFRQFV RPIFSS+ +N+DK+KMERFLHAG FSVAS
Sbjct: 599 HFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPIFSSEFINTDKNKMERFLHAGRFSVAS 658
Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
IYAPI FPPLP I+LK A APAVAAVGSL+++D DRIILK+++LTGYPQRVSK KA
Sbjct: 659 IYAPISFPPLPTIILKRAGEDAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKAS 718
Query: 721 VRYMFHNPEDVRWFK 735
VR+MF+NPEDV+WFK
Sbjct: 719 VRHMFYNPEDVKWFK 733
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297852102|ref|XP_002893932.1| hypothetical protein ARALYDRAFT_473739 [Arabidopsis lyrata subsp. lyrata] gi|297339774|gb|EFH70191.1| hypothetical protein ARALYDRAFT_473739 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/755 (67%), Positives = 604/755 (80%), Gaps = 35/755 (4%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M SRVQVNK+HK+RFS+KSSRNLH+T+ +D +RIGKSD N KGAKAARVQR KMLR+Q
Sbjct: 1 MGRSRVQVNKAHKTRFSSKSSRNLHRTSLQDSNRIGKSDNNYVKGAKAARVQRGKMLREQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKRAS G+ S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G SSTV+SS+
Sbjct: 61 KRAAVLKEKRASGGLHSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGNCSSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAK-------------------VADLVAFVASASSFSEES 161
Y+LR +VL+APHGDL+ CMEMAK VADL+AFVASAS+ EE+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKACELLSAFVGSFREESLSQVADLMAFVASASAPLEEN 180
Query: 162 MSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY 221
S +IDSFG+QCLSV RS+GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY
Sbjct: 181 SSNFIDSFGSQCLSVLRSIGLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFY 240
Query: 222 AADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH 281
ADT+DELHKF+WLFK QRLTVPHWR+QRP+++AQKV ++ DD +SGKCTLLL GYLRA
Sbjct: 241 PADTRDELHKFMWLFKAQRLTVPHWRSQRPYVVAQKVGMLVDDESSGKCTLLLSGYLRAR 300
Query: 282 CLSVNQLVHISGAGDFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKL 341
LSVNQLVH+SG GDFQ KIE+LKDPFPLN RK ++ME D+ HD EV+++L PDP+K
Sbjct: 301 KLSVNQLVHVSGVGDFQFSKIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQ 360
Query: 342 EPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEA 401
EPL+VEN PDPLAGEQTWPTE EMAEAD+ QK KK+ LPRGTSEYQAAWIVD++DE
Sbjct: 361 EPLVVENTPDPLAGEQTWPTEEEMAEADKTQKQGNVKKKTLPRGTSEYQAAWIVDETDEE 420
Query: 402 DSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEIL 461
DSD+ + D+GMVLD+ D +G + + +DD+ SLN R D T+N+S MM+ E L
Sbjct: 421 DSDNGDSDDNGMVLDRGDDS--NQKGRYDQEFEDDEKSLNLRDIDTETQNESEMMDDEDL 478
Query: 462 TREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPP 521
T EQI+DEIKKIKEA+AEDEEFPDE++TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP
Sbjct: 479 TEEQIKDEIKKIKEAYAEDEEFPDEIETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQ 538
Query: 522 EYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAE 581
+YARIFAFD RTQK + L YVRLHIKEVP G A +L +
Sbjct: 539 DYARIFAFDNVARTQKLMIVYQL-------------GSYVRLHIKEVPLGAASKLSSLVN 585
Query: 582 R-SPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNM 640
P+I GLLQHESKMSVLHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+FS+DN
Sbjct: 586 TLKPIIGFGLLQHESKMSVLHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFSTDNF 645
Query: 641 NSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRI 700
+SDKHKMERFLH G FS+ASIY PI FPPLPL+VLK ++G PAVAA+GSL+S+D ++I
Sbjct: 646 SSDKHKMERFLHPGRFSLASIYGPISFPPLPLVVLKISEGSNTPAVAALGSLKSVDTNKI 705
Query: 701 ILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
ILKKI+LTGYPQRVSK+KA VRYMFHNPEDV+WFK
Sbjct: 706 ILKKIILTGYPQRVSKMKASVRYMFHNPEDVKWFK 740
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487337|ref|XP_004157576.1| PREDICTED: LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/748 (67%), Positives = 598/748 (79%), Gaps = 26/748 (3%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M G+R QVNK HKSRFS+K++R HKT+ KDKS++ K+ NVAKGA+AAR+QR+KM+R+Q
Sbjct: 1 MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKN--NVAKGARAARLQRSKMIREQ 58
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+L++KR SG SPPRVIVLF LSASV+LN + EDLL L+ GA SSTV+SS+
Sbjct: 59 KRAAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAP---GASSSTVASSE 115
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
Y+LR +VL+AP+GDL CMEMAKVADL+AFVASAS + E S S YIDSFG++CLSV RSL
Sbjct: 116 YKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSL 175
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPSTAVLIRDLPTD+KK+ D KKMCISS+ SEFPEDCKFYAADTKDELHKF+WLFKEQR
Sbjct: 176 GLPSTAVLIRDLPTDIKKKNDYKKMCISSINSEFPEDCKFYAADTKDELHKFMWLFKEQR 235
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
LTVPHWR QRP+LM+QKVD+VAD+C GKCTLLL GYLRA LSVNQLVH++GAGDFQL
Sbjct: 236 LTVPHWRTQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLS 295
Query: 301 KIEILKDPFPLNARKESDAMES--DEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
KIE+LKDP PLN R E DAM++ DE+ ++ +IR L P + EPL+VEN PDPL+GEQT
Sbjct: 296 KIEVLKDPVPLNPRTEQDAMDTQDDEVTNIFIIRLLEPS--EHEPLVVENEPDPLSGEQT 353
Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
WPTEA+ AEA++NQK + +KRAL GTSEYQ AW + +S++ DSD DN+ D M+LD
Sbjct: 354 WPTEADRAEAERNQKEKHLRKRALAHGTSEYQEAWDIGESEDEDSDVDNET-DCMMLDSS 412
Query: 419 DRGFPGYEGTNNSDI-DDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
NN I DDDQASL F D T+ DSVMM+ E +T EQ DEI+KIK AH
Sbjct: 413 YTN--EVNNLNNQGISDDDQASLEFENFDRETDMDSVMMDDE-MTNEQXLDEIQKIKNAH 469
Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
AEDEEFPDEVDTP+D+PARKRFA+YRGLKSFRTSSWDP+ESLP +YARIF F+ RTQK
Sbjct: 470 AEDEEFPDEVDTPMDIPARKRFARYRGLKSFRTSSWDPQESLPQDYARIFEFNNIARTQK 529
Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
HV A AL++EQ N D V + Y+RLH+KEVP G A +LCE+A+ P+ A GLLQHESKM
Sbjct: 530 HVLAKALEIEQGNGDHCVASCSYLRLHVKEVPVGAALKLCELAKSMPITACGLLQHESKM 589
Query: 598 SVLHFSVKKHDTYDA----------PIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKM 647
SVLHFS+KKHD + P+K KE+L+FHVGFRQFV RPIFS+DN NSDKHKM
Sbjct: 590 SVLHFSIKKHDVSEENAKIHDKNSPPLKGKEKLVFHVGFRQFVTRPIFSTDNFNSDKHKM 649
Query: 648 ERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVL 707
ERFLH G FS+ASIYAPI F PLPLIVLK+ +G + AA GSL+SIDP RIILKKI+L
Sbjct: 650 ERFLHGGRFSIASIYAPISFAPLPLIVLKNVEGNT--SFAASGSLKSIDPRRIILKKIIL 707
Query: 708 TGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
+GYPQRVSKLKA VRYMFHNP+DVRWFK
Sbjct: 708 SGYPQRVSKLKATVRYMFHNPDDVRWFK 735
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445642|ref|XP_004140581.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/748 (67%), Positives = 598/748 (79%), Gaps = 26/748 (3%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M G+R QVNK HKSRFS+K++R HKT+ KDKS++ K+ NVAKGA+AAR+QR+KM+R+Q
Sbjct: 1 MGGNRAQVNKPHKSRFSSKATRQQHKTSLKDKSKVTKN--NVAKGARAARLQRSKMIREQ 58
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+L++KR SG SPPRVIVLF LSASV+LN + EDLL L+ GA SSTV+SS+
Sbjct: 59 KRAAVLQDKRTLSGSKSPPRVIVLFRLSASVDLNPLAEDLLSLLAP---GASSSTVASSE 115
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
Y+LR +VL+AP+GDL CMEMAKVADL+AFVASAS + E S S YIDSFG++CLSV RSL
Sbjct: 116 YKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSL 175
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPSTAVLIRDLPTD+KK+ D KKMCISS+ SEFPEDCKFYAADTKDELHKF+WLFKEQR
Sbjct: 176 GLPSTAVLIRDLPTDIKKKNDYKKMCISSINSEFPEDCKFYAADTKDELHKFMWLFKEQR 235
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
LTVPHWR QRP+LM+QKVD+VAD+C GKCTLLL GYLRA LSVNQLVH++GAGDFQL
Sbjct: 236 LTVPHWRTQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLS 295
Query: 301 KIEILKDPFPLNARKESDAMES--DEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT 358
KIE+LKDP PLN R E DAM++ DE+ ++ +IR L P + EPL+VEN PDPL+GEQT
Sbjct: 296 KIEVLKDPVPLNPRTEQDAMDTQDDEVTNIFIIRLLEPS--EHEPLVVENEPDPLSGEQT 353
Query: 359 WPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE 418
WPTEA+ AEA++NQK + +KRAL GTSEYQ AW + +S++ DSD DN+ D M+LD
Sbjct: 354 WPTEADRAEAERNQKEKHLRKRALAHGTSEYQEAWDIGESEDEDSDVDNET-DCMMLDSS 412
Query: 419 DRGFPGYEGTNNSDI-DDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAH 477
NN I DDDQASL F D T+ DSVMM+ E +T EQ DEI+KIK AH
Sbjct: 413 YTN--EVNNLNNQGISDDDQASLEFENFDRETDMDSVMMDDE-MTNEQKLDEIQKIKNAH 469
Query: 478 AEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 537
AEDEEFPDEVDTP+D+PARKRFA+YRGLKSFRTSSWDP+ESLP +YARIF F+ RTQK
Sbjct: 470 AEDEEFPDEVDTPMDIPARKRFARYRGLKSFRTSSWDPQESLPQDYARIFEFNNIARTQK 529
Query: 538 HVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKM 597
HV A AL++EQ N D V + Y+RLH+KEVP G A +LCE+A+ P+ A GLLQHESKM
Sbjct: 530 HVLAKALEIEQGNGDHCVASCSYLRLHVKEVPVGAALKLCELAKSMPITACGLLQHESKM 589
Query: 598 SVLHFSVKKHDTYDA----------PIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKM 647
SVLHFS+KKHD + P+K KE+L+FHVGFRQFV RPIFS+DN NSDKHKM
Sbjct: 590 SVLHFSIKKHDVSEENAKIHDKNSPPLKGKEKLVFHVGFRQFVTRPIFSTDNFNSDKHKM 649
Query: 648 ERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVL 707
ERFLH G FS+ASIYAPI F PLPLIVLK+ +G + AA GSL+SIDP RIILKKI+L
Sbjct: 650 ERFLHGGRFSIASIYAPISFAPLPLIVLKNVEGNT--SFAASGSLKSIDPRRIILKKIIL 707
Query: 708 TGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
+GYPQRVSKLKA VRYMFHNP+DVRWFK
Sbjct: 708 SGYPQRVSKLKATVRYMFHNPDDVRWFK 735
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517386|ref|XP_003527368.1| PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/735 (70%), Positives = 602/735 (81%), Gaps = 2/735 (0%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M GSRVQVNK HKSRFS+KSSRNLHKT+ KD+ I KS+ NV KGA+AAR+QRNKM+RDQ
Sbjct: 1 MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKR SG SPPRVIVLF L ASV+L S+ +DLL LS + LS TV+SS+
Sbjct: 61 KRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL 180
YR R +VL+APHGDL+ CMEMAKVADL+ FVASA S EE+ SYYIDSFGNQCLSVFRSL
Sbjct: 121 YRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSL 180
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPSTAV IRDLP +LK R +LKK+C SSL SEFPEDCKFY ADTKDELHKFLWLFKEQR
Sbjct: 181 GLPSTAVFIRDLPPELKHRNELKKICTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQR 240
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
L VPHWR QR +L++QKVD V D NS KCTL L GYLR+ LSVNQLVH+SGAGDFQL
Sbjct: 241 LKVPHWRTQRSYLLSQKVDAVYDG-NSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLS 299
Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
KIE+LKDP PLN++K D M++DE+HD EVI +L PDP E L+VEN+PDPLAGEQTWP
Sbjct: 300 KIEVLKDPCPLNSKKNQDLMDADEMHDTEVIGSLVPDPQNQEALVVENIPDPLAGEQTWP 359
Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDR 420
TEAE+A+AD++QK +K KKR+LP GTSEYQAAWIVDDSDE N+ DDGMVLD+ +
Sbjct: 360 TEAEIAKADEDQKKKKIKKRSLPHGTSEYQAAWIVDDSDEESDYD-NENDDGMVLDEGED 418
Query: 421 GFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAED 480
GFPG E S+ D D ASL +D+ T+NDSVMME + LTRE+IEDE+ ++KEAHA D
Sbjct: 419 GFPGQEENKYSEFDGDGASLRLGDSDEETDNDSVMMEVDNLTREKIEDELNELKEAHAAD 478
Query: 481 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 540
EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLP +YARIF FD F RTQKHV
Sbjct: 479 EEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVL 538
Query: 541 ANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVL 600
A AL+++ EN +D + Y RLHI VP+ +A +L +A+ P+ A GLL+HESK+SVL
Sbjct: 539 AKALELDHENREDCISVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVL 598
Query: 601 HFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVAS 660
HFSVKKH+ YDAPIK+KEELIFHVGFRQFV PIFSS+ +N+DK+KMERFLHAG FSVAS
Sbjct: 599 HFSVKKHEAYDAPIKSKEELIFHVGFRQFVGWPIFSSEFINTDKNKMERFLHAGRFSVAS 658
Query: 661 IYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720
IYAPI FPPLP I+LK APAVAAVGSL+++D DRIILK+++LTGYPQRVSK KA
Sbjct: 659 IYAPISFPPLPTIILKRDGENAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKAS 718
Query: 721 VRYMFHNPEDVRWFK 735
VR+MF+NPEDV+WFK
Sbjct: 719 VRHMFYNPEDVKWFK 733
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 745 | ||||||
| TAIR|locus:2035893 | 793 | AT1G42440 "AT1G42440" [Arabido | 0.982 | 0.923 | 0.648 | 3.6e-256 | |
| UNIPROTKB|Q5R434 | 805 | TSR1 "Pre-rRNA-processing prot | 0.327 | 0.303 | 0.501 | 1.2e-106 | |
| UNIPROTKB|Q2NL82 | 804 | TSR1 "Pre-rRNA-processing prot | 0.327 | 0.303 | 0.501 | 6.5e-106 | |
| UNIPROTKB|F1NNP8 | 803 | LOC100857289 "Uncharacterized | 0.327 | 0.303 | 0.517 | 4.5e-105 | |
| UNIPROTKB|Q5XGY1 | 815 | tsr1 "Pre-rRNA-processing prot | 0.931 | 0.851 | 0.362 | 1.3e-102 | |
| MGI|MGI:2144566 | 803 | Tsr1 "TSR1 20S rRNA accumulati | 0.327 | 0.303 | 0.478 | 1.8e-101 | |
| RGD|2322150 | 804 | Tsr1 "TSR1, 20S rRNA accumulat | 0.327 | 0.303 | 0.466 | 1.8e-101 | |
| UNIPROTKB|J9NS98 | 801 | TSR1 "Uncharacterized protein" | 0.326 | 0.303 | 0.496 | 1.8e-99 | |
| UNIPROTKB|F1PXP0 | 725 | F1PXP0 "Uncharacterized protei | 0.323 | 0.332 | 0.492 | 6.8e-98 | |
| ZFIN|ZDB-GENE-030131-3762 | 836 | tsr1 "TSR1, 20S rRNA accumulat | 0.326 | 0.290 | 0.462 | 1.9e-97 |
| TAIR|locus:2035893 AT1G42440 "AT1G42440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2466 (873.1 bits), Expect = 3.6e-256, P = 3.6e-256
Identities = 478/737 (64%), Positives = 564/737 (76%)
Query: 1 MTGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQ 60
M SRVQVNK+HK+RFS+KSSRNLH+T +D RIGKSD N KGAKAARVQR KMLR+Q
Sbjct: 1 MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ 60
Query: 61 KRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSK 120
KR A+LKEKRAS GI S PRVIVLF LSASV LNS+ ED+L+ LSS+G+G SSTV+SS+
Sbjct: 61 KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE 120
Query: 121 YRLRTSVLQAPHGDLVGCMEMAKVADLXXXXXXXXXXXXXXMSYYIDSFGNQCLSVFRSL 180
Y+LR +VL+APHGDL+ CMEMAKVADL S +IDSFG+QCLSVFRS+
Sbjct: 121 YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI 180
Query: 181 GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
GLPST VLIRDLP+D+KK+ ++KKMC S L SEFPEDCKFY ADT+DELHKF+WLFK QR
Sbjct: 181 GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR 240
Query: 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLG 300
LTVPHWR+QR +++A+K ++ DD +SGKCTLLL GYLRA LSVNQLVH+SG GDFQ
Sbjct: 241 LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS 300
Query: 301 KIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWP 360
KIE+LKDPFPLN RK ++ME D+ HD EV+++L PDP+K EPL++EN PDPLAGEQTWP
Sbjct: 301 KIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWP 360
Query: 361 TEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVXXXXXXXXXXXXXXXXGMVLDQ-ED 419
TE EMAEAD+NQK + KK+ LPRGTSEYQAAWIV GMVLD+ ED
Sbjct: 361 TEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED 420
Query: 420 RGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTRXXXXXXXXXXXXXXXX 479
EG + + +DD SLN R D T+N+S M++ E LT
Sbjct: 421 SN---QEGMYDQEFEDDGKSLNLRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYAD 477
Query: 480 XXXFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHV 539
FPDEV+TP+DVPAR+RFAKYRGLKSFRTSSWDP ESLP +YARIFAFD RTQK V
Sbjct: 478 DEEFPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLV 537
Query: 540 FANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERS-PLIASGLLQHESKMS 598
ALKME+E+ DD VP YVRLHIKEVP G A +L + + P+I GLLQHESKMS
Sbjct: 538 LKQALKMEEEDRDDCVPIGSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMS 597
Query: 599 VLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSV 658
VLHFSVKK+D Y+APIK KEEL+FHVGFRQF+ARP+F++DN +SDKHKMERFLH GCFS+
Sbjct: 598 VLHFSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSL 657
Query: 659 ASIYAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLK 718
ASIY PI FPPLPL+VLK SL+S++P++IILKKI+LTGYPQRVSK+K
Sbjct: 658 ASIYGPISFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMK 717
Query: 719 AIVRYMFHNPEDVRWFK 735
A VRYMFHNPEDV+WFK
Sbjct: 718 ASVRYMFHNPEDVKWFK 734
|
|
| UNIPROTKB|Q5R434 TSR1 "Pre-rRNA-processing protein TSR1 homolog" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 127/253 (50%), Positives = 162/253 (64%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F
Sbjct: 485 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKE 544
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
+ E E + YV LH+ EVP + C + +PLIA LL HE KMSVL+
Sbjct: 545 VEEKEVEGAE----VGCYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNM 597
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V++ P+KAKEELIFH GFR+F A P+FS +DKHK++RFL A VA++Y
Sbjct: 598 VVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKLQRFLTADMALVATVY 656
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FPP +++ K L S+DPDR+++K++VL+G+P ++ A+VR
Sbjct: 657 APITFPPASVLLFKQKSNGMHSLIATGH-LMSVDPDRMVIKRVVLSGHPLKMFTKMAVVR 715
Query: 723 YMFHNPEDVRWFK 735
YMF N EDV WFK
Sbjct: 716 YMFFNREDVLWFK 728
|
|
| UNIPROTKB|Q2NL82 TSR1 "Pre-rRNA-processing protein TSR1 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 127/253 (50%), Positives = 162/253 (64%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F
Sbjct: 484 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKE 543
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
+ E E + YV LH+ EVP + C + +PLIA LL HE KMSVL+
Sbjct: 544 VEEKEVEGAE----VGWYVTLHVSEVPVSVVE--C-FRQGTPLIAFSLLPHEQKMSVLNM 596
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V++ P+KAKEELIFH GFR+F A P+FS +DKHK++RFL A VA++Y
Sbjct: 597 VVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKLQRFLTADMALVATVY 655
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FPP +++ K L S+DPDR+++K++VL+G+P ++ A+VR
Sbjct: 656 APITFPPASVLLFKQKSNGMHSLIATGH-LMSVDPDRMVIKRVVLSGHPFKIFTKMAVVR 714
Query: 723 YMFHNPEDVRWFK 735
YMF N EDV WFK
Sbjct: 715 YMFFNREDVLWFK 727
|
|
| UNIPROTKB|F1NNP8 LOC100857289 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 131/253 (51%), Positives = 166/253 (65%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDEVDTP DVPAR RF KYRGLKSFRTS WDPKE+LP +YARI+ F F+RT+K++F
Sbjct: 483 FPDEVDTPRDVPARVRFQKYRGLKSFRTSPWDPKENLPRDYARIYQFQDFSRTRKNIFRQ 542
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
K E E SV YV LH+ VP + E PL+ LL HE KMSVL+F
Sbjct: 543 IEKEETEGA--SV--GWYVTLHVCNVPVSVME---SFKEGKPLVLFSLLPHEQKMSVLNF 595
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V++H + P+KAKEELIFH GFR+F A P+FS + ++DKHK+ERFL V ++Y
Sbjct: 596 LVRRHPSNSDPVKAKEELIFHCGFRRFRASPLFSQ-HTSADKHKLERFLRLDAALVVTVY 654
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FPP ++V K SL ++DPDRII+K++VL+G+P ++ A+VR
Sbjct: 655 APITFPPASVLVFKQRSNGMHDLIATG-SLLAVDPDRIIIKRLVLSGHPFKIFTKAAVVR 713
Query: 723 YMFHNPEDVRWFK 735
YMF N EDV WFK
Sbjct: 714 YMFFNREDVMWFK 726
|
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| UNIPROTKB|Q5XGY1 tsr1 "Pre-rRNA-processing protein TSR1 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 277/765 (36%), Positives = 391/765 (51%)
Query: 3 GSRVQVNKSHKS-RFSTKSSR---NLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLR 58
G+ Q NK HKS R + ++ N + AAK + K D K R + +R
Sbjct: 13 GAYKQQNKPHKSGRHRGRGAQDRENKGRVAAKILGKKNKKDLR-----KLDRRHKANQIR 67
Query: 59 DQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQL-SSEG-----TGAL 112
Q++ A+L EKR+ PP +++ L A +V++DL + ++EG +
Sbjct: 68 RQRKDAVLAEKRSLGTKDGPPHLVIAISLHA----RAVKDDLFSLVQNNEGDILHVNDQI 123
Query: 113 SSTVS--SSKYRLRTSVLQAPHGDLVGCMEMAKVADLXXXXXXXXXXXXXXMSYYIDSFG 170
++ K + R +QA DL +++AKVAD DS+G
Sbjct: 124 KGLLALVCPKVKQRWCFIQANRDDLCSLLDLAKVADTLLFLLDPQEGW--------DSYG 175
Query: 171 NQCLSVFRSLGLPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDEL 229
+ CLS + GLPS + ++ + +KKR D+KK + + F D K + DT+ E
Sbjct: 176 DYCLSCLFAQGLPSYVLAVQGMNYIPIKKRADIKKQLSKVIENRFT-DAKLFQLDTEQEA 234
Query: 230 HKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKC-TLLLHGYLRAHCLSVNQL 288
+ Q+ +R++R +++AQ+ D D SG TL L GY+R L+VN+L
Sbjct: 235 AVLIRQISTQKQRHLAFRSRRSYMLAQRADFQPTD-ESGLVGTLKLSGYVRGQELNVNRL 293
Query: 289 VHISGAGDFQLGKIEILKDPFPLNAR------KESDAME-SDEI---HDLEV-IRTL-SP 336
VHI G GDF + +I+ DP+PLN R K ME SDE ++E I+ L
Sbjct: 294 VHIVGHGDFHMSQIDAPPDPYPLNPRVHKPKTKSGQDMEMSDEPATGSEMEQDIKVLMKA 353
Query: 337 DPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVX 396
DP E L E VPDP+ GEQTWPTE E+ EA+ K + + +P+GTS YQAAWI+
Sbjct: 354 DPSAQESLQCEVVPDPMEGEQTWPTEEELKEAEDALKGTSKVVKKVPKGTSAYQAAWILD 413
Query: 397 XXXXXXXXXXXXXXXGMVLDQEDRGFPGY----EGTNNSDIDDDQA-SLNFRYADDG-TE 450
M D ED Y +G+ N + ++ + ++ DD E
Sbjct: 414 DEGDGEEESDDDDDEDMEEDAEDAMDDAYSEEEDGSGNEEAEESETLTIPDSTRDDKYDE 473
Query: 451 NDSVMMEGEILTRXXXXXXXXXXXXXXXXXXXFPDEVDTPLDVPARKRFAKYRGLKSFRT 510
N E ++L + FPDEVDTP D AR RF KYRGLKSFRT
Sbjct: 474 NVDEQEEEQMLEKYKLQRQDEV----------FPDEVDTPRDQIARIRFQKYRGLKSFRT 523
Query: 511 SSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPA 570
S WD KE+LP +YARIF F F RT+K VF E+E D+ YV +HI VP
Sbjct: 524 SPWDVKENLPRDYARIFQFHDFFRTRKRVFK-----EEEEKDEGAMVGWYVTVHISAVPV 578
Query: 571 GIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFV 630
+ PL+ LL HE KMSV++ V++H + PIKAKEELIFH GFR+F
Sbjct: 579 SVMEHF---KHGLPLVLCSLLPHEQKMSVMNMLVRRHPGNNEPIKAKEELIFHCGFRRFR 635
Query: 631 ARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSXXXXXXXXXXXXX 690
A P+FS + ++DKHK ERFL + V ++YAPI FPP ++V K
Sbjct: 636 ASPLFSQHS-SADKHKSERFLRSDTSVVVTVYAPITFPPASVLVFKQRYNGMQDLVATG- 693
Query: 691 SLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
SL +++PDRI++K+IVL+G+P ++ K A+VRYMF N EDV WFK
Sbjct: 694 SLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFK 738
|
|
| MGI|MGI:2144566 Tsr1 "TSR1 20S rRNA accumulation" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 121/253 (47%), Positives = 158/253 (62%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F F T+K +F
Sbjct: 483 FPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKE 542
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
+ E E + YV LH+ +VP + + A PLIA LL +E KMSVL+
Sbjct: 543 IEEKEAEGAE----VGWYVTLHVSDVPVSVVEYFRQGA---PLIAFSLLPYEQKMSVLNM 595
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V ++ P+KAKEELIFH GFR+F A P+FS +DKHK +RFL A V +++
Sbjct: 596 VVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADAAFVVTVF 654
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FPP +++ K L S+DPDR+++K++VL+G+P ++ A+VR
Sbjct: 655 APITFPPASVLLFKQRRNGMHSLIATGH-LFSVDPDRMVIKRVVLSGHPFKIFTKMAVVR 713
Query: 723 YMFHNPEDVRWFK 735
YMF N EDV WFK
Sbjct: 714 YMFFNREDVMWFK 726
|
|
| RGD|2322150 Tsr1 "TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 118/253 (46%), Positives = 156/253 (61%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F F T+K +F
Sbjct: 484 FPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKE 543
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
+ E E + YV LH+ VP + + +PLIA LL +E KMSVL+
Sbjct: 544 IEEKETEGAE----VGWYVTLHVSNVPVSVVE---SFRQGAPLIAFSLLPYEQKMSVLNM 596
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V + P+KAKEELIFH GFR+F A P+FS +DKHK +RFL A V +++
Sbjct: 597 VVSRSPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADAALVVTVF 655
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FPP +++ K L S+DPDR+++K++VL+G+P ++ A+VR
Sbjct: 656 APITFPPASVLLFKQRRNGMHSLIATGH-LFSVDPDRMVIKRVVLSGHPFKIFTKTAVVR 714
Query: 723 YMFHNPEDVRWFK 735
YMF + +DV WFK
Sbjct: 715 YMFFSRDDVLWFK 727
|
|
| UNIPROTKB|J9NS98 TSR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 126/254 (49%), Positives = 160/254 (62%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F
Sbjct: 481 FPDEIDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKRIFKE 540
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAER-SPLIASGLLQHESKMSVLH 601
+ E E + YV LH+ EVP + E +R +PLIA LL HE KMSVL+
Sbjct: 541 IEEKEVEGAE----VGWYVTLHVSEVPLSVV----EYFKRGAPLIAFSLLPHEQKMSVLN 592
Query: 602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
V +H P+KAKE+LIFH GFR+F A P+FS +DKHK +RFL A V +I
Sbjct: 593 MVVSRHPGNIEPVKAKEDLIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADVALVVTI 651
Query: 662 YAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
Y PI FPP +++ K L S+DPDR+++K+IVL+G+P ++ A+V
Sbjct: 652 YGPITFPPASVLLFKQNSNGMHSLIATGYLL-SVDPDRMVIKRIVLSGHPFKIFTKMAVV 710
Query: 722 RYMFHNPEDVRWFK 735
RYMF + EDV WFK
Sbjct: 711 RYMFFSREDVLWFK 724
|
|
| UNIPROTKB|F1PXP0 F1PXP0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 124/252 (49%), Positives = 158/252 (62%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F
Sbjct: 484 FPDEIDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFTNTRKRIFKE 543
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAER-SPLIASGLLQHESKMSVLH 601
+ E E + YV LH+ EVP + E +R +PLIA LL HE KMSVL+
Sbjct: 544 IEEKEVEGAE----VGWYVTLHVSEVPLSVV----EYFKRGAPLIAFSLLPHEQKMSVLN 595
Query: 602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASI 661
V +H P+KAKE+LIFH GFR+F A P+FS +DKHK +RFL A V +I
Sbjct: 596 MVVSRHPGNIEPVKAKEDLIFHCGFRRFRASPLFSQHTA-ADKHKFQRFLTADVALVVTI 654
Query: 662 YAPICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
Y PI FPP +++ K L S+DPDR+++K+IVL+G+P ++ A+V
Sbjct: 655 YGPITFPPASVLLFKQNSNGMHSLIATGYLL-SVDPDRMVIKRIVLSGHPFKIFTKMAVV 713
Query: 722 RYMFHNPEDVRW 733
RYMF + EDV W
Sbjct: 714 RYMFFSREDVLW 725
|
|
| ZFIN|ZDB-GENE-030131-3762 tsr1 "TSR1, 20S rRNA accumulation, homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.9e-97, Sum P(3) = 1.9e-97
Identities = 117/253 (46%), Positives = 156/253 (61%)
Query: 483 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFAN 542
FPDEVDTPLDVP+R RF +YRGLKSFR+S WDP E+LP Y+RIF F F R ++ + A+
Sbjct: 517 FPDEVDTPLDVPSRTRFQRYRGLKSFRSSPWDPLENLPSNYSRIFQFQNFERMRRRILAD 576
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
A N +D YV LHI +VP + PL+ LL HE KMSV++
Sbjct: 577 AA-----NEEDGAMVGWYVTLHIVDVPPSVME---SFQTGKPLVLVSLLPHEQKMSVMNV 628
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
V++H + PIK+KEEL+F GFR+F A IFS + DKHK+ERFL ++ S Y
Sbjct: 629 LVRQHPSNTEPIKSKEELVFQCGFRRFRASAIFSQ-HTTGDKHKLERFLRPDAPTIMSFY 687
Query: 663 APICFPPLPLIVLKSXXXXXXXXXXXXXSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVR 722
API FP ++V K SL S DP R++LK+IVL+G+P ++++ A+VR
Sbjct: 688 APITFPTAGVLVFKQRDNGMQDLVATG-SLLSCDPRRVVLKRIVLSGHPFKINRRSAVVR 746
Query: 723 YMFHNPEDVRWFK 735
YMF N +D+ WFK
Sbjct: 747 YMFFNRDDILWFK 759
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5SWD9 | TSR1_MOUSE | No assigned EC number | 0.3773 | 0.9073 | 0.8418 | yes | no |
| Q9VP47 | TSR1_DROME | No assigned EC number | 0.3231 | 0.9422 | 0.8624 | yes | no |
| Q19329 | TSR1_CAEEL | No assigned EC number | 0.3109 | 0.8684 | 0.8242 | yes | no |
| Q5R434 | TSR1_PONAB | No assigned EC number | 0.3700 | 0.9302 | 0.8608 | yes | no |
| Q2NL82 | TSR1_HUMAN | No assigned EC number | 0.3672 | 0.9355 | 0.8669 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00002877001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (801 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034779001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (467 aa) | • | • | • | 0.868 | |||||
 | GSVIVG00038815001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa) | • | • | • | • | 0.813 | ||||
 | GSVIVG00028481001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa) | • | • | 0.812 | ||||||
 | GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | • | 0.795 | ||||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.795 | ||||||
 | GSVIVG00034559001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa) | • | • | 0.793 | ||||||
 | GSVIVG00018638001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa) | • | • | 0.778 | ||||||
 | GSVIVG00036355001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa) | • | • | 0.776 | ||||||
 | GSVIVG00033408001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa) | • | • | 0.774 | ||||||
 | GSVIVG00000597001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa) | • | • | 0.772 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 745 | |||
| pfam04950 | 293 | pfam04950, DUF663, Protein of unknown function (DU | 3e-95 | |
| COG5177 | 769 | COG5177, COG5177, Uncharacterized conserved protei | 2e-77 | |
| smart00785 | 83 | smart00785, AARP2CN, AARP2CN (NUC121) domain | 2e-22 | |
| pfam08142 | 81 | pfam08142, AARP2CN, AARP2CN (NUC121) domain | 4e-19 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 4e-17 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 8e-14 | |
| cd01882 | 231 | cd01882, BMS1, Bms1, an essential GTPase, promotes | 3e-04 |
| >gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663) | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 3e-95
Identities = 125/254 (49%), Positives = 158/254 (62%), Gaps = 11/254 (4%)
Query: 486 EVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFAN 542
EV+TP DVPAR+RFAKYRGLKSFRTS WDP E +LP +YARIF F + T+K +
Sbjct: 1 EVETPPDVPARERFAKYRGLKSFRTSPWDPNEKDPNLPNDYARIFQFQNYKNTKKRILNE 60
Query: 543 ALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHF 602
E+E + V YVRL IK VP +A + +I GLL HE KMSV++F
Sbjct: 61 Y---EEEKRIEGVKPGWYVRLEIKNVPKELAENF---NSKQLIIVFGLLPHEHKMSVVNF 114
Query: 603 SVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY 662
+KKH Y P+K+KE LI VGFR+F ++PI+ S N ++DKHK ER+L A+ Y
Sbjct: 115 KIKKHRWYKKPLKSKEPLIIQVGFRRFQSQPIY-SQNTSNDKHKYERYLPPHKTCNATFY 173
Query: 663 APICFPPLPLIVLK-SADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIV 721
PI FP PL+ K S +AA G + DP+RII KK+ LTG+P ++ K A V
Sbjct: 174 GPITFPNSPLLAFKKSFSDTNGFRIAATGCILECDPNRIIAKKLKLTGHPYKIFKKTAFV 233
Query: 722 RYMFHNPEDVRWFK 735
RYMF NPEDV WFK
Sbjct: 234 RYMFFNPEDVEWFK 247
|
This family contains several uncharacterized eukaryotic proteins. Length = 293 |
| >gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 264 bits (675), Expect = 2e-77
Identities = 183/757 (24%), Positives = 313/757 (41%), Gaps = 76/757 (10%)
Query: 4 SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRL 63
S ++ +KS+KS+ ++K + +K +G + K R R K
Sbjct: 7 SSLKGHKSYKSKHASKGALKRLYKGKVEKEPVGTGKP-DKQMKKRDRRNRAKQKSIGSIA 65
Query: 64 ALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTVS 117
+ + K SG +VI + L + + + LL EG G L +V
Sbjct: 66 RIKENKLPFSGKNGAYKVITIVPLGNECDGYDILDKLLHGNDDEGIMVQEVDGGLFYSVH 125
Query: 118 SSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVF 177
++++ + ++ KV+D+V F S +D FG Q
Sbjct: 126 IEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLSDVQ--------EVDEFGEQIGRKL 177
Query: 178 RSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWL 235
+ G+ S L + K+ +K+ S + FP + + + +
Sbjct: 178 KLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGGLMDALNVVRI 237
Query: 236 FKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295
+WR+ RP+++ + + L G +R + N+L HI G
Sbjct: 238 LCTSVPRSINWRDNRPYIVPSEASYSDGE-------LFYEGTVRGIGFNANRLKHIPDFG 290
Query: 296 DFQLGKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAG 355
DF KI + + R+ +D LE+ + L E P+ G
Sbjct: 291 DFLSNKIIVNGQ-YEQTIREIF----ADRATKLELDLQTVFESNMNRDTLDEYAPE---G 342
Query: 356 EQTWPTEAEMAEADQNQKHR------------KQKKRALPRGTSEYQAAWIVDDSDEADS 403
E E E D R KK A+P+GTS YQA W D+ +E
Sbjct: 343 EDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQ 402
Query: 404 DSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTR 463
+D + +D +D + D+++ + + A D D+ E L+
Sbjct: 403 CNDEE-STMSAIDDDD----------PKENDNEEVAGDEESAID----DNEGFEE--LSP 445
Query: 464 EQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLP 520
E+ E ++++ ++ ED EFPDE + A +R+ +YRGL++ T SW E S P
Sbjct: 446 EEEERQLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLYTCSWRSDEKDPSFP 505
Query: 521 PEYARIFAFDKFTRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMA 580
E+ + FD + + V +++ + P VR+ ++ P + L E
Sbjct: 506 EEWKSLVFFDNYRNAKNLVV-------KKDNESVAPDGQMVRIKLR-FPKFLYEGLIE-- 555
Query: 581 ERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFS-SDN 639
+ L+ GLL++E K +V +FS+++H Y+ P+K++E ++ +G R+ P+ S N
Sbjct: 556 PQILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPLKSEESMVVQLGHRRVDICPLISKGSN 615
Query: 640 MNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLK-SADGGVAPAVAAVGSLRSIDPD 698
++ K R L VAS PI F P+I+ K SA ++ + A G + + D D
Sbjct: 616 SPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGD 675
Query: 699 RIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFK 735
R+I K+ VLTG+P + K VRYMF +PEDV WFK
Sbjct: 676 RVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFK 712
|
Length = 769 |
| >gnl|CDD|129021 smart00785, AARP2CN, AARP2CN (NUC121) domain | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-22
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN-SGKCTLLLHGYLRAHCLSVN 286
E+ L + WR+Q P+++A +V+ + D+ + TL+++GY+R L+ N
Sbjct: 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNAN 60
Query: 287 QLVHISGAGDFQLGKIEILKDPF 309
QLVHI G GDFQ+ KIE L DP
Sbjct: 61 QLVHIPGLGDFQISKIEALPDPC 83
|
This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU. Length = 83 |
| >gnl|CDD|219725 pfam08142, AARP2CN, AARP2CN (NUC121) domain | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-19
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQ 287
E+ L + WR+QRP+++A +V+ + + T++++GY+R L+ NQ
Sbjct: 1 EILNLLRFISVMKPRPLSWRDQRPYMLADRVEDITSPEDVRG-TVVVYGYVRGTGLNANQ 59
Query: 288 LVHISGAGDFQLGKIEILKDPF 309
LVHI G GDFQ+ KIE L DP
Sbjct: 60 LVHIPGVGDFQIDKIEALPDPC 81
|
This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU. Length = 81 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 4e-17
Identities = 84/362 (23%), Positives = 157/362 (43%), Gaps = 51/362 (14%)
Query: 376 KQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDD 435
K+K +L + S +Q +D S E + + D + G D ED N+SD +
Sbjct: 567 KKKWSSLAQLKSRFQKDATLD-SIEGEEELIQDDEKGNFEDLEDE-------ENSSDNEM 618
Query: 436 DQASLNFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPA 495
+++ + A++ D V E E RE+ + ++++ + E EE D +D
Sbjct: 619 EESRGSSVTAENEESADEVDYETE---REENARKKEELR-GNFELEERGDPEKKDVDWYT 674
Query: 496 RKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSV 555
++ LK R+ + + +P I +
Sbjct: 675 EEKRKIEEQLKINRS---EFETMVPESRVVIEGY-------------------------- 705
Query: 556 PASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIK 615
A YVR+ + VP E R P++ GLL E +M ++ +K+H + +K
Sbjct: 706 RAGRYVRIVLSHVPLEFVD---EFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRWHKKILK 762
Query: 616 AKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFL--HAGCFSVASIYAPICFPPLPLI 673
+ LIF VG+R+F + P++S + + +++M ++ H C S Y P+ P
Sbjct: 763 TNDPLIFSVGWRRFQSIPVYSMKDSRT-RNRMLKYTPEHMHCN--VSFYGPVVPPNTGFC 819
Query: 674 VLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRW 733
++S G V A+G++ ++ D ++KK+ L GYP+++ + VR MF + +V
Sbjct: 820 AVQSEKGDF--RVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLK 877
Query: 734 FK 735
F+
Sbjct: 878 FE 879
|
Length = 1077 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 75.2 bits (184), Expect = 8e-14
Identities = 82/319 (25%), Positives = 131/319 (41%), Gaps = 46/319 (14%)
Query: 22 RNLHKTAAKDKSRIGKSDCNVAKGAKA-ARVQRNKMLRDQKRLALLKEKRASSGIAS--- 77
+ + A+ K D V AKA A +M R R A ++EK+ +
Sbjct: 4 KKAKHSKAEKKKLKKVMDGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRTP 63
Query: 78 ---PPRVIVLF----GLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQA 130
PP IV G S + S+ +Q E G + TV S K R R + L+
Sbjct: 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI--TVVSGKTR-RITFLEC 120
Query: 131 PHGDLVGCMEMAKVADLVAFVASAS-SFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189
P DL +++AK+ADLV + + F E+M + L++ S G+P ++
Sbjct: 121 PS-DLHQMIDVAKIADLVLLLIDGNFGFEMETMEF---------LNILISHGMPRVLGVV 170
Query: 190 R--DLPTDLKKRKDLKKMCISSLTSEFPEDCKF----------YAADTKDELHKFLWLFK 237
DL + + +KK +E + K Y L +F+ + K
Sbjct: 171 THLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMK 230
Query: 238 EQRLTVPHWRNQRPFLMAQKVD-----VVADDCNSGKCTLLLHGYLRAHCL-SVNQLVHI 291
+ L WRN P+++A +VD V + + ++GYL L + VHI
Sbjct: 231 FRPL---EWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHI 287
Query: 292 SGAGDFQLGKIEILKDPFP 310
G GDF++ +E+L DP P
Sbjct: 288 PGVGDFRMADVEVLIDPCP 306
|
Length = 1077 |
| >gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 36/237 (15%)
Query: 42 VAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLL 101
V +AAR + ++K+L + R + PP V+V+ G V +++ L+
Sbjct: 4 VQSAVRAARQFQRTQDLEEKKLHVPVVDR--TPEEPPPLVVVVVG-PPGVGKSTLIRSLI 60
Query: 102 RQLS----SEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASAS-S 156
++ + S+ G + T+ + K R R + ++ P+ D+ +++AK+ADLV + S
Sbjct: 61 KRYTKQNLSDIKGPI--TIVTGKKR-RLTFIECPN-DINSMIDVAKIADLVLLLIDGSYG 116
Query: 157 FSEESMSYYIDSFGNQCLSVFRSLGLPST-AVLIR-DLPTDLKKRKDLKKMCISSLTSEF 214
F E+ + L++ + G P VL D + K + KK +E
Sbjct: 117 FEMETFEF---------LNILQVHGFPKVMGVLTHLDKFKNNKTLRKTKKRLKHRFWTEV 167
Query: 215 PEDCK-FYAAD------TKDE---LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV 261
+ K FY + K E L +F+ + K + L WRN P+++A +++ +
Sbjct: 168 YDGAKLFYLSGIVHGRYPKTEILNLARFISVMKFRPLN---WRNSHPYVLADRMEDL 221
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| KOG1980 | 754 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 100.0 | |
| COG5177 | 769 | Uncharacterized conserved protein [Function unknow | 100.0 | |
| PF04950 | 297 | DUF663: Protein of unknown function (DUF663); Inte | 100.0 | |
| smart00785 | 83 | AARP2CN AARP2CN (NUC121) domain. This domain is th | 100.0 | |
| PF08142 | 85 | AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012 | 99.98 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.98 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 98.59 | |
| CHL00071 | 409 | tufA elongation factor Tu | 98.58 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 98.55 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 98.51 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 98.45 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.42 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 98.39 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 98.37 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 98.36 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 98.35 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.32 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 98.32 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 98.31 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 97.97 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 97.87 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 97.87 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 97.81 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 97.74 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 97.68 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 97.66 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 97.62 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 97.6 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 97.59 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 97.59 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 97.44 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 97.37 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 97.31 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 97.26 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 97.25 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 97.24 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 97.22 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 97.21 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 97.19 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 97.05 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 96.96 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 96.95 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 96.93 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 96.89 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 96.89 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 96.78 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 96.72 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 96.69 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 96.65 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 96.63 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 96.6 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 96.51 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 96.5 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 96.46 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 96.43 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 96.36 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 96.36 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 96.3 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 96.18 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 95.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 95.89 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 95.86 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 95.85 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 95.81 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 95.64 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 95.5 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 95.46 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 95.43 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 95.35 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 95.33 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 95.29 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 95.28 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 94.92 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 94.81 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 94.79 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 94.76 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 94.74 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 94.7 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 94.67 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 94.63 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 94.6 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 94.49 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 94.49 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 94.42 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 94.29 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 94.21 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 94.15 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 94.12 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 94.11 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 94.03 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 93.98 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 93.85 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 93.83 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 93.83 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 93.79 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 93.73 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 93.66 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 93.61 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 93.61 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 93.57 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 93.49 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 93.46 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 93.38 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 93.35 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 93.25 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 93.22 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 93.16 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 92.92 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 92.77 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 92.67 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 92.58 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 92.47 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 92.44 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 92.27 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 92.16 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 92.05 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 92.03 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 92.02 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 91.76 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 91.73 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 91.65 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 91.61 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 91.59 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 91.57 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 91.41 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 91.32 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 91.3 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 91.3 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 91.28 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 91.03 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 90.95 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 90.74 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 90.68 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 90.66 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 90.62 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 90.61 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 90.56 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 90.53 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 90.47 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 90.43 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 90.13 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 90.06 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 89.9 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 89.89 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 89.75 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 89.54 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 89.53 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 89.49 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 89.4 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 89.29 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 89.16 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 88.76 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 88.74 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 88.59 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 88.52 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 88.33 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 88.3 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 88.25 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 88.2 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 88.15 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 87.93 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 87.74 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 87.67 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 87.58 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 87.37 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 87.28 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 86.98 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 86.93 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 86.49 | |
| PLN03118 | 211 | Rab family protein; Provisional | 86.48 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 86.46 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 86.36 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 86.29 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 86.23 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 86.06 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 85.96 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 85.76 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 85.64 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 85.54 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 85.38 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 85.33 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 85.29 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 84.97 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 84.83 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 84.61 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 84.25 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 83.8 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 83.76 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 83.75 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 83.63 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 83.6 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 83.51 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 83.12 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 83.03 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 83.01 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 82.95 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 82.49 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 82.42 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 82.32 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 81.46 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 81.39 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 81.31 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 80.93 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 80.76 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 80.11 |
| >KOG1980 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-166 Score=1358.48 Aligned_cols=690 Identities=35% Similarity=0.552 Sum_probs=591.3
Q ss_pred CCCCccCCCCCCCCCCChhhhhhhhhhcCCcCcCCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEE
Q 004554 2 TGSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRV 81 (745)
Q Consensus 2 ~g~~kq~nK~hK~rh~sk~~~k~~~~~kgr~~~k~~~~~~~~~~~K~~Rr~~~~q~r~~Kr~~v~~~~R~~~~~~~pP~i 81 (745)
+|+||+.||+||+||+|||+++. ..||+++.+..+.+..++.+|.+||||++|+|+|||+.++..+|.+||.+++|++
T Consensus 6 ~s~lk~~~k~~kskhrskg~l~~--~~kg~~~~~~~~~k~~~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a~~l 83 (754)
T KOG1980|consen 6 RSPLKNANKPHKSKHRSKGALKR--DYKGKVELKPLGHKPDKTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGAPKL 83 (754)
T ss_pred cccccccCccccccccccchhhh--hcCCcccccccCCCchhhhhHHHHHhHHHHHHHhHHHHHHHhhhhccccccccce
Confidence 35899999999999999999999 9999999998887778999999999999999999999999999999999999999
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCccccc
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEES 161 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~g~~tv~~~r~k~R~tfie~~~~dl~~mLD~aKvADlVlllidas~g~~~~ 161 (745)
|+++||++.+++.++ +--..-.+...+.|.+.++|||+|+.|+.|. .+++++||+|||||+|||+++|+
T Consensus 84 i~~~pl~~~id~~~~----l~E~i~~~~~~~~i~~~i~rFK~~~~fl~P~-~n~~~~lD~~kv~D~~~f~~s~~------ 152 (754)
T KOG1980|consen 84 ITGLPLKNQIDPLDI----LYEGIMVQEVDSKINVHIPRFKSNLKFLTPK-TNFLNILDAAKVSDFVVFLLSAV------ 152 (754)
T ss_pred eeccchhhhcchhhh----hhhhhccccCCccceecchhhhhceeeeccc-cchhhhhhhhhhcceeeeecchh------
Confidence 999999999987766 2211111222388899999999999999996 99999999999999999999999
Q ss_pred cccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHHHHHHHhhcc
Q 004554 162 MSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240 (745)
Q Consensus 162 ~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~~~e~~nL~R~I~~~k 240 (745)
+++|+||+.+++++++||+|++++|+.+|.. +.|++.++||.+.+++.++|+....|+.|+..+|.+||+|.||+++
T Consensus 153 --~~~~e~ge~i~~~~~~qGi~s~v~~v~~L~sv~~K~r~~vkK~l~~~~~k~f~s~~~v~~ld~~~dalnllR~l~~~k 230 (754)
T KOG1980|consen 153 --EEDDEFGEQIIRALEAQGIPSYVSVVSDLSSVHEKFRLDVKKALEKRISKFFPSEKRVMRLDTSQDALNLLRGLCVQK 230 (754)
T ss_pred --hhhhHHHHHHHHHHhhcCCccceeeecccchhchhhhHHHHHHHHHHHHHhCCCcchheeccccchhHHHHHHhhhcc
Confidence 5699999999999999999999999776663 4499999999999999999998888999999999999999999999
Q ss_pred ccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeecee-eccC---CCCCCCcccc
Q 004554 241 LTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKI-EILK---DPFPLNARKE 316 (745)
Q Consensus 241 ~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I-~~~~---DP~pl~~~~~ 316 (745)
+++|.||++|+||+++-+++. .+.+...|+|.+.|||||..||+|+||||||+|||||.+| ++.. ||.|+....+
T Consensus 231 ~r~l~~rd~r~Yl~~~~vdf~-s~~s~~~gtL~i~G~vRG~~ln~NrLvHI~g~GDFqi~~I~~~p~~~qdp~~ik~~~~ 309 (754)
T KOG1980|consen 231 PRVLHWRDNRGYLFADLVDFV-SELSYSEGTLVIFGYVRGQELNVNRLVHIPGFGDFQINKIDEAPIDGQDPKIIKKFID 309 (754)
T ss_pred chheecccchhhhHHHhhhhc-cccCCCcceEEEEEEeecccccccceEeecCccceeEEEeecCCcccCCCcccCccCC
Confidence 999999999999999999876 2225567999999999999999999999999999999999 5555 7888775443
Q ss_pred CCcccccccccceeeecc-CCCCCCCccccccCCCCCccCCCCCCChhhhhHhhhhhhhhhcccccCCCCCchhhhcccc
Q 004554 317 SDAMESDEIHDLEVIRTL-SPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIV 395 (745)
Q Consensus 317 ~d~m~~~~~~~~~~~~~l-~~~~~~~e~L~~e~~~d~~~~eqt~pteeel~~a~~~~~~~~~~k~~vpkG~s~yqaawi~ 395 (745)
.. -. ..+. ..+|..+.+|.++..||+|+.||+|||++|...++.+....+..++ ||||||+|||+||+
T Consensus 310 ~s-------~e---~~i~~qsdpd~~~~l~~~~~pD~md~e~~~~t~de~~~~~~~~~~~~~~~~-VPKg~S~yqa~wi~ 378 (754)
T KOG1980|consen 310 LS-------LE---FCISTQSDPDKADSLESEHTPDDMDVEQDWPTRDESNVAIKETEPMKRPKR-VPKGTSDYQAAWIL 378 (754)
T ss_pred CC-------cc---eeeecccChhHhhhhhhcCCCchhhhhccccchhhhhhhccccchhccccc-cCCCccccceeeec
Confidence 11 11 2333 6677889999999999999999999999998887665554455566 99999999999999
Q ss_pred CCCCcCCCCCCCcccCCcccccccCCCCCCCCCCCCCCccchhcccccccCCCCCccccccccCCCCHHH-HHHHHHHHH
Q 004554 396 DDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQ-IEDEIKKIK 474 (745)
Q Consensus 396 dd~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~e~~d~~~~~~s~~~~~~~~d~e~-e~~~~~~~~ 474 (745)
|+++++|..+++ ++.+|.+++. ++++ +++.|| ..++.+.+...+..+++++|+.+++++ +.+++++++
T Consensus 379 de~~~~dk~d~~-ed~~m~ied~---~~de----~~~~EE---~~ds~~~~~~~~~~~d~~~D~~~dee~re~~e~~k~~ 447 (754)
T KOG1980|consen 379 DEEEESDKEDDN-EDTEMEIEDE---FEDE----DSDEEE---LRDSIEAGGTEAEESDGFYDESSDEEARESEELEKYQ 447 (754)
T ss_pred CCcccccccccc-cchhhhhhhh---hhhc----cccchh---hhccccccccchhhccccccccchhhHHhHHHHHHHH
Confidence 965443221111 1122211110 0000 001010 001111111111334455667777776 667788888
Q ss_pred hhcccCCCCCCCCCCCCCchHHHHHHHHhcCccccCCCCCCCCCChhHHhhhhchhcHHHHHHHHHHHHhhhhccccCCC
Q 004554 475 EAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDS 554 (745)
Q Consensus 475 ~~~~ed~~FpDEvdtp~~~~ar~Rf~kyRgLkSfrts~WD~~E~lP~~y~ri~~fe~~~~~~k~~~~~~~~~~~~~~~~g 554 (745)
++ +++.+||||||||++.+||+||+|||||||||||+||++||||.+|+|||+|+||++|+|+++++.... .+|
T Consensus 448 ke-r~e~~fPDEvdt~~d~~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i~kk~~~e-----~~~ 521 (754)
T KOG1980|consen 448 KE-REESEFPDEVDTPPDESARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRILKKEDNE-----AEA 521 (754)
T ss_pred HH-hHhhhCCCccccCCChHHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHhhhhcccc-----ccc
Confidence 87 778899999999999999999999999999999999999999999999999999999999999973221 133
Q ss_pred CCCCcEEEEEEecCchhHHHhhccccCCCcEEEEecccccceeeEEEEEEEecCCCCCCCCCCceEEEEeeeeeeeeecc
Q 004554 555 VPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPI 634 (745)
Q Consensus 555 ~~~G~YVri~i~~VP~~~~~~~~~~~~~~Plil~gLl~hE~k~svv~~~ikrh~~~~~~lKSkdpLif~~G~RRFq~~Pi 634 (745)
.+|+||||+|+|||.++++.|... .+|||||||||||||+|+||.++||+.|+.|||||++|||+||||||.++|+
T Consensus 522 -~~G~~V~v~l~nvP~~i~E~~~~~---~~lvvfglL~hEhKmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~Pl 597 (754)
T KOG1980|consen 522 -IPGQYVRVFLRNVPVSILEAIKKQ---LLLVVFGLLPHEHKMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPL 597 (754)
T ss_pred -CCCceEEEEeecCcHHHHHHHhhc---cceeeeeccchhhhheeeEEEEecCCCCCccccccceeEEEeccceEEeccc
Confidence 699999999999999999999866 9999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeecccCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEeEeeeeeccCccceeEEeEEEEeeeEEE
Q 004554 635 FSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRV 714 (745)
Q Consensus 635 fS~~~~~~~k~K~~ry~p~~~~~vAt~ygPi~~p~~pvl~f~~~~~~~~~~l~atG~vl~~d~~riIvKrl~LtG~P~KI 714 (745)
||+ |++|++|||+||+|+.++.||||||||+|||+|||+|+.+++ ++.+|+|||+++++||+|||+||.||+||||||
T Consensus 598 fSs-~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~-~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi 675 (754)
T KOG1980|consen 598 FSS-HTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSD-GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKI 675 (754)
T ss_pred ccc-CCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCC-cccceeeeeeeeccCCcceeEeeeeecCCCcee
Confidence 998 999999999999999999999999999999999999999988 799999999999999999999999999999999
Q ss_pred eeeeEEEeccCCChhhhcCcceeeEEE
Q 004554 715 SKLKAIVRYMFHNPEDVRWFKVKRALF 741 (745)
Q Consensus 715 ~K~tA~Ir~MFfn~~DV~wFkpv~~~~ 741 (745)
||+.|+|||||||+|||.|||||+||-
T Consensus 676 ~kk~v~VRYMFFn~EDV~wFKpIqL~T 702 (754)
T KOG1980|consen 676 HKKYVVVRYMFFNREDVEWFKPIQLYT 702 (754)
T ss_pred eeeeEEEeeecCCHhHeeeecceeeec
Confidence 999999999999999999999999984
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-130 Score=1059.21 Aligned_cols=689 Identities=22% Similarity=0.337 Sum_probs=469.2
Q ss_pred ccCCCCCCCCCCChhhhhhhhhhcCCcCcCCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEe
Q 004554 6 VQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLF 85 (745)
Q Consensus 6 kq~nK~hK~rh~sk~~~k~~~~~kgr~~~k~~~~~~~~~~~K~~Rr~~~~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vv 85 (745)
.|+|++|.+ +.|+.+++.+..+...|+|||+.... .+.+|..++..+-.+|++|||+++|++. ..|||+|||||
T Consensus 2 de~~~kh~k--a~~k~~~k~~dg~~g~naKafavAa~---G~mar~~~rtadi~ekklhVPmvdrtp~-d~PPPfIvavv 75 (1077)
T COG5192 2 DEKKAKHSK--AEKKKLKKVMDGKVGNNAKAFAVAAI---GQMARQAMRTADIEEKKLHVPMVDRTPK-DLPPPFIVAVV 75 (1077)
T ss_pred cchhhhhhh--HHHhhhhhhhccccccchhhhhhhch---HHHHHHHhhccchhhhccccccccCCcc-cCCCCeEEEee
Confidence 356666653 22222333112222356888877664 4555666688888999999999999975 67999999999
Q ss_pred cCCC---ccChhhHHHHHHHhhccCCCCC--cceEEEecCceeeEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCcccc
Q 004554 86 GLSA---SVNLNSVREDLLRQLSSEGTGA--LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEE 160 (745)
Q Consensus 86 ~l~~---~~~~~sl~~~~vk~~~~~~~~~--g~~tv~~~r~k~R~tfie~~~~dl~~mLD~aKvADlVlllidas~g~~~ 160 (745)
|||+ +|+|+|| |+.|+++.+.. |||||+++ ++|||||++|| +||++|||+|||||||||+|||.||
T Consensus 76 GPpGtGKsTLirSl----Vrr~tk~ti~~i~GPiTvvsg-K~RRiTflEcp-~Dl~~miDvaKIaDLVlLlIdgnfG--- 146 (1077)
T COG5192 76 GPPGTGKSTLIRSL----VRRFTKQTIDEIRGPITVVSG-KTRRITFLECP-SDLHQMIDVAKIADLVLLLIDGNFG--- 146 (1077)
T ss_pred cCCCCChhHHHHHH----HHHHHHhhhhccCCceEEeec-ceeEEEEEeCh-HHHHHHHhHHHhhheeEEEeccccC---
Confidence 9998 4567777 99999999887 99999998 58999999999 9999999999999999999999976
Q ss_pred ccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeCC-------HHHHH
Q 004554 161 SMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAADT-------KDELH 230 (745)
Q Consensus 161 ~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk---~~~~kK~lk~~f~~e~~~~~Klf~l~~-------~~e~~ 230 (745)
|+|||+||||+|+.||||+|+||+||||. +|+ .+..||.||||||+|+|+|+|||||++ +.||+
T Consensus 147 -----fEMETmEFLnil~~HGmPrvlgV~ThlDl-fk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreil 220 (1077)
T COG5192 147 -----FEMETMEFLNILISHGMPRVLGVVTHLDL-FKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREIL 220 (1077)
T ss_pred -----ceehHHHHHHHHhhcCCCceEEEEeeccc-ccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHH
Confidence 99999999999999999999999999997 444 456899999999999999999999994 99999
Q ss_pred HHHHHHhhccccCCccccCCCeEEEEeeEeccCCC-----CCCCceEEEEEEEeCCCC-CCCCeEEeCCCCceeeceeec
Q 004554 231 KFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC-----NSGKCTLLLHGYLRAHCL-SVNQLVHISGAGDFQLGKIEI 304 (745)
Q Consensus 231 nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~-----~~~~~~l~v~GyvRG~~l-~~n~lVHIpG~GDFqi~~I~~ 304 (745)
||+|||++||+|||.||+.||||||||+++.+-+. ....+.++|||||+|++| +...-|||||+|||.+++|+.
T Consensus 221 nLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~ 300 (1077)
T COG5192 221 NLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEV 300 (1077)
T ss_pred HHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhh
Confidence 99999999999999999999999999999754221 445789999999999999 478889999999999999999
Q ss_pred cCCCCCCCccc--------------------------cCCcccccc-------------cccceeeeccCCCCCCCcccc
Q 004554 305 LKDPFPLNARK--------------------------ESDAMESDE-------------IHDLEVIRTLSPDPLKLEPLL 345 (745)
Q Consensus 305 ~~DP~pl~~~~--------------------------~~d~m~~~~-------------~~~~~~~~~l~~~~~~~e~L~ 345 (745)
|+||||-+... ++|+++++- ++++.|...| +
T Consensus 301 L~DPcPp~~a~~~rrRrLs~k~KliY~PMsdiGGil~dKD~vyiev~~~n~s~~~~~eaGegekm~~~l----------q 370 (1077)
T COG5192 301 LIDPCPPPDADHGRRRRLSLKSKLIYSPMSDIGGILKDKDRVYIEVPTSNFSKDENSEAGEGEKMKMQL----------Q 370 (1077)
T ss_pred cCCCCCCCcccchhhcccchhhceeecccccccceeecccceeeeccccCcCcCcccccchhhHHHHHH----------h
Confidence 99999955421 233333220 1121221111 1
Q ss_pred c-cCC--CCCccCCCCCCChhhhhHhhhh-----hhhhhcccccCCCCCchhh-hccccCCCCcCCCCCCCcccCCcccc
Q 004554 346 V-ENV--PDPLAGEQTWPTEAEMAEADQN-----QKHRKQKKRALPRGTSEYQ-AAWIVDDSDEADSDSDNDADDGMVLD 416 (745)
Q Consensus 346 ~-e~~--~d~~~~eqt~pteeel~~a~~~-----~~~~~~~k~~vpkG~s~yq-aawi~dd~~~~~~~~~~~~~d~~~~~ 416 (745)
+ |.. .|- -|-|.|...+-+.-++-+ +..++. +| -|.|-.--| .+- .|+...++++-.. +|+..+.+
T Consensus 371 ~~eq~~g~dg-vglqlFsnsd~~d~~d~e~~eid~~gr~t-~r-qp~Gk~i~eE~~~-~Del~~dd~~~~~-~De~ed~d 445 (1077)
T COG5192 371 EIEQDPGVDG-VGLQLFSNSDAIDTVDRESSEIDNVGRKT-RR-QPTGKAIAEETSR-EDELSFDDSDVST-SDENEDVD 445 (1077)
T ss_pred hhccCCCcCc-eeeEEecCCcchhhccccccccccccccc-cc-CCCCcchhhhhcc-ccccCcccccccc-cccccccc
Confidence 0 000 010 133444443322222111 111222 33 566631111 110 0111001110000 11111111
Q ss_pred cc--cCCCCCCCCCCCCCCcc---chhcc-cccccC---CCCC--------------ccccccccCCCCHHHHHHHHHHH
Q 004554 417 QE--DRGFPGYEGTNNSDIDD---DQASL-NFRYAD---DGTE--------------NDSVMMEGEILTREQIEDEIKKI 473 (745)
Q Consensus 417 ~~--~~~~~~~~~~~~~d~e~---~~~~~-~~e~~d---~~~~--------------~~s~~~~~~~~d~e~e~~~~~~~ 473 (745)
-. ...++...+ ++.++ |.++. |+++.. .++. +-...+|++.+++++- +++|
T Consensus 446 ~~~~~~~~nn~~e---~~~e~~a~dsDSqfdese~~~~w~~~~a~kl~~sqs~kr~~ni~ki~y~e~lspeec---i~e~ 519 (1077)
T COG5192 446 FTGKKGAINNEDE---SDNEEVAFDSDSQFDESEGNLRWKEGLASKLAYSQSGKRGRNIQKIFYDESLSPEEC---IEEY 519 (1077)
T ss_pred cccccccccCccc---ccchhhccccccccccccccchhhhhhhhhhhhhhcccccccccceeccccCCHHHH---HHHh
Confidence 00 000110000 00000 00010 000000 0000 0011367888888763 3444
Q ss_pred Hhh-----------cccCCCCCC---C------CCCCCCc-hHHHHHHH-Hhc---Ccc-cc-CCCCCCC----------
Q 004554 474 KEA-----------HAEDEEFPD---E------VDTPLDV-PARKRFAK-YRG---LKS-FR-TSSWDPK---------- 516 (745)
Q Consensus 474 ~~~-----------~~ed~~FpD---E------vdtp~~~-~ar~Rf~k-yRg---LkS-fr-ts~WD~~---------- 516 (745)
+-+ ++++..|=| + ++...-+ ..-++++| |.. ||| |- .+--|..
T Consensus 520 kge~~~s~e~~~v~~D~~edff~vsk~~n~~~s~~~ek~~~~~fe~L~kkw~s~~~lk~RF~~~~~lds~eg~EEl~qd~ 599 (1077)
T COG5192 520 KGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDD 599 (1077)
T ss_pred ccccccccccccccccCchhhhhhhhhcccccccchhhhchhHHHHHHHHHhhHHHHHHHhhcccccccccchhhhhhch
Confidence 322 011111111 0 0000000 01233322 322 222 11 1111110
Q ss_pred -----CCC----------------------------hhHHh--hh----------hchh--c-----------HHHHHHH
Q 004554 517 -----ESL----------------------------PPEYA--RI----------FAFD--K-----------FTRTQKH 538 (745)
Q Consensus 517 -----E~l----------------------------P~~y~--ri----------~~fe--~-----------~~~~~k~ 538 (745)
|+| ..+|. |- .+|+ . |...+++
T Consensus 600 E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~d~e~~d~dwy~~eK~k 679 (1077)
T COG5192 600 EKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRK 679 (1077)
T ss_pred hccCcccccccccccccchhhccCCcccccchhhccccchHHHhhhhhhhhhhhhcceeehhccCccccccchHHHHHHH
Confidence 000 00010 00 0111 0 1111222
Q ss_pred HHHH-------Hhhhhc--cccCCCCCCCcEEEEEEecCchhHHHhhccccCCCcEEEEecccccceeeEEEEEEEecCC
Q 004554 539 VFAN-------ALKMEQ--ENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDT 609 (745)
Q Consensus 539 ~~~~-------~~~~~~--~~~~~g~~~G~YVri~i~~VP~~~~~~~~~~~~~~Plil~gLl~hE~k~svv~~~ikrh~~ 609 (745)
+-++ ++.|+. +..++|+++|.||||+|+.||.+|+++|++. +|+|+|||||.|.+||+|+.+||||+|
T Consensus 680 i~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r---~piV~GGlLp~E~~~giVq~rikrhrW 756 (1077)
T COG5192 680 IEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSR---YPIVLGGLLPAEKEMGIVQGRIKRHRW 756 (1077)
T ss_pred HHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCC---CcEEeccccchhhhhhhhhhHHHHhHH
Confidence 2221 233443 3458999999999999999999999999998 999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeeeeeeeeccccccCCCCCcceeecccCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEeEe
Q 004554 610 YDAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAV 689 (745)
Q Consensus 610 ~~~~lKSkdpLif~~G~RRFq~~PifS~~~~~~~k~K~~ry~p~~~~~vAt~ygPi~~p~~pvl~f~~~~~~~~~~l~at 689 (745)
|.++||++||||||+||||||++||||+.| ..+|+||+||||+||||.+|||||+++||||++++|+.. |.|||+|+
T Consensus 757 hKKILKTNdPlifS~GWRRFQsiPvys~~D-srTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse~--g~frv~a~ 833 (1077)
T COG5192 757 HKKILKTNDPLIFSVGWRRFQSIPVYSMKD-SRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEK--GDFRVLAL 833 (1077)
T ss_pred HHHHhccCCCeEEEechhhhcccceeeecc-hhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEecC--CceEEEEe
Confidence 999999999999999999999999999955 456999999999999999999999999999999999853 68999999
Q ss_pred eeeeccCccceeEEeEEEEeeeEEEeeeeEEEeccCCChhhhcCcceeeEEEE
Q 004554 690 GSLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKVKRALFV 742 (745)
Q Consensus 690 G~vl~~d~~riIvKrl~LtG~P~KI~K~tA~Ir~MFfn~~DV~wFkpv~~~~~ 742 (745)
|+|.++|.+..|||||+|+|||++|++||||||.||.|.+||++|.-.+|--|
T Consensus 834 g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~v 886 (1077)
T COG5192 834 GTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAV 886 (1077)
T ss_pred eeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeee
Confidence 99999999999999999999999999999999999999999999988777544
|
|
| >COG5177 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-125 Score=1011.08 Aligned_cols=681 Identities=24% Similarity=0.352 Sum_probs=542.4
Q ss_pred CCccCCCCCCCCCCChhhhhhhhhhcCCcCcCC-ccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEE
Q 004554 4 SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIG-KSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVI 82 (745)
Q Consensus 4 ~~kq~nK~hK~rh~sk~~~k~~~~~kgr~~~k~-~~~~~~~~~~K~~Rr~~~~q~r~~Kr~~v~~~~R~~~~~~~pP~iV 82 (745)
+|| .||+||++|+|||++|+ ..||++++.. .+.+..++++|++|||+++|++.+++..+.+.+|.++|.+|||+||
T Consensus 8 s~k-~~k~ykskhask~alk~--~yk~kve~~~~g~~~~~~~~~k~dRrN~aKq~~~~~i~~~~en~~~f~gknGa~kvI 84 (769)
T COG5177 8 SLK-GHKSYKSKHASKGALKR--LYKGKVEKEPVGTGKPDKQMKKRDRRNRAKQKSIGSIARIKENKLPFSGKNGAYKVI 84 (769)
T ss_pred hhc-cCCcccccccchhHHHH--HhcCCccccCCCCCCchhhhHHhhhhhhHHHhhhhHHHHHHhhcCcccCCCCCceEE
Confidence 566 88999999999999999 9999988743 5566678999999999999999999999999999999999999999
Q ss_pred EEecCCCccChhhHHHHHHHhhccCCCCC-------c--ceEEEecCceeeEEEEeCCCCChHHHHhHHhhcceEEEEee
Q 004554 83 VLFGLSASVNLNSVREDLLRQLSSEGTGA-------L--SSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVAS 153 (745)
Q Consensus 83 ~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-------g--~~tv~~~r~k~R~tfie~~~~dl~~mLD~aKvADlVlllid 153 (745)
+||||+..++...+. -|+|...+-+. | ...+.+.+||+++.|+.|+.-++.+++|+|||||+|+|+++
T Consensus 85 tIVpL~n~~d~~dil---~klL~~~d~e~~m~q~~~~~~~ys~~i~~fK~Nllf~~pd~~~f~~l~d~ckVsD~VvF~ls 161 (769)
T COG5177 85 TIVPLGNECDGYDIL---DKLLHGNDDEGIMVQEVDGGLFYSVHIEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLS 161 (769)
T ss_pred EEeecccccchHHHH---HHHHccCCcccccceeccCceEEeeeHHHhhcceeEeccchhhhhhhhhhheeccEEEEEec
Confidence 999999999988772 34444333222 2 35566789999999999987779999999999999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHH
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHK 231 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~--~~Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~~~e~~n 231 (745)
+. +++|+.|+.+.+.|+.||+.++|+++..|.. ..|.+..+||+|++++.++||+..++|.++..+|++|
T Consensus 162 ~v--------qEVDefge~i~r~l~~qgI~s~i~~~~~ls~v~s~k~~~~vKqslesf~~~fFp~~ERV~~~~~~~DALn 233 (769)
T COG5177 162 DV--------QEVDEFGEQIGRKLKLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGGLMDALN 233 (769)
T ss_pred ch--------hhhhHHHHHHHHHHHhhhHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCchhheeeccccHHHHH
Confidence 98 6799999999999999999999999555542 2478899999999999999999999999999999999
Q ss_pred HHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCC
Q 004554 232 FLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPL 311 (745)
Q Consensus 232 L~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~~~DP~pl 311 (745)
.+|.+|+.-||.|.||++|||+|+...++. +|.|.+.|.|||.+|++|+|+||||+|||++.+|...+.-.
T Consensus 234 v~R~lcts~pR~i~wrdnR~Yiv~~e~sys-------~G~l~~~g~VrG~g~n~nrL~Hi~~fgdF~~nkI~~~~q~~-- 304 (769)
T COG5177 234 VVRILCTSVPRSINWRDNRPYIVPSEASYS-------DGELFYEGTVRGIGFNANRLKHIPDFGDFLSNKIIVNGQYE-- 304 (769)
T ss_pred HHHHHhccCCcccccccCCceeeecccccC-------CCceEEEEEeeccccCchheeecCccchhhhheeeeccchh--
Confidence 999999999999999999999999665543 68999999999999999999999999999999999875311
Q ss_pred CccccCCcccccccccceeeeccCCCCCCCccccccCCCCCccCCCCCCC-hhhhhHhhhh----------hhhhhcccc
Q 004554 312 NARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPT-EAEMAEADQN----------QKHRKQKKR 380 (745)
Q Consensus 312 ~~~~~~d~m~~~~~~~~~~~~~l~~~~~~~e~L~~e~~~d~~~~eqt~pt-eeel~~a~~~----------~~~~~~~k~ 380 (745)
.+.. +--|+-+..-..++..+..++ ..|++|. +..|. ++..|.. +++...+... ..+....++
T Consensus 305 q~~r-~I~~d~at~l~~~l~~v~~~~-~~rdtld-~~~p~---g~d~~sd~d~d~~~d~~~~vr~Dd~~f~~~~eq~~~~ 378 (769)
T COG5177 305 QTIR-EIFADRATKLELDLQTVFESN-MNRDTLD-EYAPE---GEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTSKK 378 (769)
T ss_pred hhHH-HHhhhhccccccchhhhcccc-ccccchh-hcCCc---cccchhhhhhhhcccccceeEecccccCCcccccchh
Confidence 1000 000000000000112222333 3345554 22222 4444522 2222211000 000011122
Q ss_pred -cCCCCCchhhhccccCCCCcCCCCCCCcccCCcccccccCCCCCCCCCCCCCCccchhcccccccCCCCCccccccccC
Q 004554 381 -ALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGE 459 (745)
Q Consensus 381 -~vpkG~s~yqaawi~dd~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~e~~d~~~~~~s~~~~~~ 459 (745)
+||||||.|||.|++|++.+++...+.| +-.+.+|+++....+++ ++.. |+ + .++.++++ .+
T Consensus 379 aavpkGts~yqa~w~~deeee~~q~nd~e-~tm~~idd~d~~E~dne-----ev~~-----De-E---~~idDne~--f~ 441 (769)
T COG5177 379 AAVPKGTSFYQAKWAEDEEEEDGQCNDEE-STMSAIDDDDPKENDNE-----EVAG-----DE-E---SAIDDNEG--FE 441 (769)
T ss_pred hccCCCCcccceeecccchhhccccCchh-hhhhhhcccCchhcccc-----cccC-----ch-h---hccccccc--ch
Confidence 2999999999999998655433321111 11111111100000000 0000 00 0 11112333 47
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchHHHHHHHHhcCccccCCCCCCCC---CChhHHhhhhchhcHHHHH
Q 004554 460 ILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQ 536 (745)
Q Consensus 460 ~~d~e~e~~~~~~~~~~~~ed~~FpDEvdtp~~~~ar~Rf~kyRgLkSfrts~WD~~E---~lP~~y~ri~~fe~~~~~~ 536 (745)
++++|+|++|++++|+.++||.+||||++..+...|++||.+||||+++-||.|+..| +.|++|.+++.|+||++++
T Consensus 442 els~eee~rq~~efr~~eked~efpde~elqPse~aier~k~YRGlrnLytc~w~~de~dps~P~ewk~L~~f~nyrn~k 521 (769)
T COG5177 442 ELSPEEEERQLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLYTCSWRSDEKDPSFPEEWKSLVFFDNYRNAK 521 (769)
T ss_pred hcChHHHHHHHHHHHhhhhhhccCchhhccCccHHHHHHHHHhcccccccccccccccCCCCChHHHhhheeccchhhhh
Confidence 8999999999999999779999999999999999999999999999999999999876 5899999999999999999
Q ss_pred HHHHHHHhhhhccccCCCCCCCcEEEEEEecCchhHHHhhccccCCCcEEEEecccccceeeEEEEEEEecCCCCCCCCC
Q 004554 537 KHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKA 616 (745)
Q Consensus 537 k~~~~~~~~~~~~~~~~g~~~G~YVri~i~~VP~~~~~~~~~~~~~~Plil~gLl~hE~k~svv~~~ikrh~~~~~~lKS 616 (745)
++++++--+ ..+.+|+.|||.|+ ||..+++.++... .-|+|+|||.||+|.+|.||+++||..|++||+|
T Consensus 522 n~~vk~~~~-------~~a~~G~~vri~lr-~p~~l~E~~~~p~--~llvvygll~yE~k~tV~nFs~~rh~eye~P~~s 591 (769)
T COG5177 522 NLVVKKDNE-------SVAPDGQMVRIKLR-FPKFLYEGLIEPQ--ILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPLKS 591 (769)
T ss_pred hheecCCcc-------ccCCCCcEEEEEEe-ccHHHHhhhcccc--eeeeeeehhhhcchhhhhhhhhhhhhcccCCCCc
Confidence 999875421 34789999999998 9999999987652 5677799999999999999999999999999999
Q ss_pred CceEEEEeeeeeeeeecccccc-CCCCCcceeecccCCCceEEEEEEeecCCCCccEEEEEecCCC-CCCeEeEeeeeec
Q 004554 617 KEELIFHVGFRQFVARPIFSSD-NMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGG-VAPAVAAVGSLRS 694 (745)
Q Consensus 617 kdpLif~~G~RRFq~~PifS~~-~~~~~k~K~~ry~p~~~~~vAt~ygPi~~p~~pvl~f~~~~~~-~~~~l~atG~vl~ 694 (745)
+++|++|+|.|||.++|+||+. +..||.|||.||+|+....||||+|||.|++.|+|+|+.+... .+.+++|||+.++
T Consensus 592 ~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n 671 (769)
T COG5177 592 EESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNN 671 (769)
T ss_pred ccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccc
Confidence 9999999999999999999984 4457899999999999999999999999999999999987432 6899999999999
Q ss_pred cCccceeEEeEEEEeeeEEEeeeeEEEeccCCChhhhcCcceeeEE
Q 004554 695 IDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKVKRAL 740 (745)
Q Consensus 695 ~d~~riIvKrl~LtG~P~KI~K~tA~Ir~MFfn~~DV~wFkpv~~~ 740 (745)
+|++|+|+||.||||||||.||+.++|||||||||||.|||||+|+
T Consensus 672 ~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~Iqlf 717 (769)
T COG5177 672 FDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLF 717 (769)
T ss_pred cCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecchhhh
Confidence 9999999999999999999999999999999999999999999997
|
|
| >PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-89 Score=723.55 Aligned_cols=252 Identities=49% Similarity=0.868 Sum_probs=48.6
Q ss_pred CCCCCCCchHHHHHHHHhcCccccCCCCCCCC---CChhHHhhhhchhcHHHHHHHHHHHH-hhhhccccCCCCCCCcEE
Q 004554 486 EVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANA-LKMEQENMDDSVPASLYV 561 (745)
Q Consensus 486 Evdtp~~~~ar~Rf~kyRgLkSfrts~WD~~E---~lP~~y~ri~~fe~~~~~~k~~~~~~-~~~~~~~~~~g~~~G~YV 561 (745)
|||||.|++||+||+|||||||||||+||++| +||.+|+|||+|+||+++++++++++ .+.+.+.+.+|+.+|+||
T Consensus 1 Evdt~~~~~ar~Rf~KyRgLKs~r~s~wD~~E~~~~lP~~y~ri~~f~n~~~~k~~~~~~~~~~~~~~~~~~g~~~G~YV 80 (297)
T PF04950_consen 1 EVDTPPDEPARERFQKYRGLKSFRTSEWDPDEKDPNLPEDYSRIFQFENFKRTKKRALKEAELDEEEREQEEGVRPGTYV 80 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999 99999999999999999999998875 122223446899999999
Q ss_pred EEEEecCchhHHHhhccccCCCcEEEEecccccceeeEEEEEEEecCCCCCCCCCCceEEEEeeeeeeeeeccccccCCC
Q 004554 562 RLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMN 641 (745)
Q Consensus 562 ri~i~~VP~~~~~~~~~~~~~~Plil~gLl~hE~k~svv~~~ikrh~~~~~~lKSkdpLif~~G~RRFq~~PifS~~~~~ 641 (745)
||+|++||++++++|++. +||||||||+||+||||||++|+||+||++||||||||||||||||||++||||+ +++
T Consensus 81 rI~i~~vP~~~~~~~~~~---~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~-~~~ 156 (297)
T PF04950_consen 81 RIEISNVPCEFVENFDPS---YPLILGGLLPHEQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQ-EDN 156 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999 667
Q ss_pred CCcceeecccCCCceEEEEEEeecCCCCccEEEEEecCCCC-CCeEeEeeeeeccCccceeEEeEEEEeeeEEEeeeeEE
Q 004554 642 SDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGV-APAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720 (745)
Q Consensus 642 ~~k~K~~ry~p~~~~~vAt~ygPi~~p~~pvl~f~~~~~~~-~~~l~atG~vl~~d~~riIvKrl~LtG~P~KI~K~tA~ 720 (745)
|+||||+||||+|+||+||||||++|||||||+|++.++.+ +|+|+|||+|+++||+++|+|||+||||||||||||||
T Consensus 157 ~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~ 236 (297)
T PF04950_consen 157 NNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAV 236 (297)
T ss_dssp ---------------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCE
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEECceEE
Confidence 88999999999999999999999999999999999964434 79999999999999999999999999999999999999
Q ss_pred EeccCCChhhhcCcceeeEEE
Q 004554 721 VRYMFHNPEDVRWFKVKRALF 741 (745)
Q Consensus 721 Ir~MFfn~~DV~wFkpv~~~~ 741 (745)
|||||||++||+|||||+|.-
T Consensus 237 vr~MF~~~~dv~~F~~~~l~T 257 (297)
T PF04950_consen 237 VRGMFFNPEDVAWFKGAELRT 257 (297)
T ss_dssp ECSSSSTCCHHHHS-S--BEE
T ss_pred hhhhcCCHHHHHhhcCCEEEe
Confidence 999999999999999999974
|
; PDB: 1WB1_D 1WB3_B 1WB2_A. |
| >smart00785 AARP2CN AARP2CN (NUC121) domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=245.94 Aligned_cols=82 Identities=39% Similarity=0.699 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCC-CCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccC
Q 004554 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC-NSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILK 306 (745)
Q Consensus 228 e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~-~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~~~ 306 (745)
|++||+|+||+||+++|+||++|||||||+++++++.. ..++++|+|||||||++|++|++|||||+|||||++|+.++
T Consensus 1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~ 80 (83)
T smart00785 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHIPGLGDFQISKIEALP 80 (83)
T ss_pred CHHHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEeCCcCCeEeeEEeecC
Confidence 68999999999999999999999999999999987643 45678999999999999999999999999999999999999
Q ss_pred CCC
Q 004554 307 DPF 309 (745)
Q Consensus 307 DP~ 309 (745)
|||
T Consensus 81 dP~ 83 (83)
T smart00785 81 DPC 83 (83)
T ss_pred CCC
Confidence 998
|
This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237. |
| >PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2) | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-33 Score=243.56 Aligned_cols=82 Identities=45% Similarity=0.747 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCC---CCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeec
Q 004554 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNS---GKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEI 304 (745)
Q Consensus 228 e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~---~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~ 304 (745)
|++||+|+||++|+++|+||++|||||||++++.++.+.. .+++|+|||||||.+|++|++|||||+|||||++|+.
T Consensus 1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~ 80 (85)
T PF08142_consen 1 EILNLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENEDGTLKVYGYVRGSPLSVNQLVHIPGVGDFQISKIES 80 (85)
T ss_pred CHHHHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCCceEEEEEEEEccccccCCCEEEeCCcCCeEeeEeee
Confidence 6899999999999999999999999999999998764422 2579999999999999999999999999999999999
Q ss_pred cCCCC
Q 004554 305 LKDPF 309 (745)
Q Consensus 305 ~~DP~ 309 (745)
++|||
T Consensus 81 ~~DPc 85 (85)
T PF08142_consen 81 LPDPC 85 (85)
T ss_pred cCCCC
Confidence 99999
|
It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=273.33 Aligned_cols=206 Identities=20% Similarity=0.341 Sum_probs=177.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--cceEEEecCce
Q 004554 45 GAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSSTVSSSKYR 122 (745)
Q Consensus 45 ~~K~~Rr~~~~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g~~tv~~~r~k 122 (745)
+-.++||||++|+|++||++++..+|. +..+||++|+|+|+++++. .+|++.|+..+....... |++++..+ ..
T Consensus 7 ~~~~~r~~~~~~~~~~k~~~~~~~~r~--~~~~~~~~i~ivG~~~~GK-stl~~~l~~~~~~~~~~~~~g~i~i~~~-~~ 82 (225)
T cd01882 7 AVAAARQFQRTADIEEKKLHVPVVDRT--PEEPPPLVVAVVGPPGVGK-TTLIKSLVKNYTKQNISDIKGPITVVTG-KK 82 (225)
T ss_pred chHHHHHHHHHHHhhhccccceeeccc--cccCCCCEEEEECCCCCCH-HHHHHHHHhhcccCccccccccEEEEec-CC
Confidence 345789999999999999999999998 4589999999999998753 356455465544333322 88888776 57
Q ss_pred eeEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhH
Q 004554 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRK 200 (745)
Q Consensus 123 ~R~tfie~~~~dl~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~--~~Kk~~ 200 (745)
++++|+.|| +++..++++++.||+||||+|++. ++++.+.+++++++.+|+|.+++|++.+|. +.++..
T Consensus 83 ~~i~~vDtP-g~~~~~l~~ak~aDvVllviDa~~--------~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 83 RRLTFIECP-NDINAMIDIAKVADLVLLLIDASF--------GFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred ceEEEEeCC-chHHHHHHHHHhcCEEEEEEecCc--------CCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHH
Confidence 999999999 899999999999999999999994 488889999999999999999999999995 223456
Q ss_pred HHHHHHHhhcccccCCCCeeEEeC-------CHHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccC
Q 004554 201 DLKKMCISSLTSEFPEDCKFYAAD-------TKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD 263 (745)
Q Consensus 201 ~~kK~lk~~f~~e~~~~~Klf~l~-------~~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~ 263 (745)
++++.|+++|++++..++|+|++| +.+|+.|++|.|++++++.++||+.|||||||+++|+++
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~ 223 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITN 223 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccC
Confidence 788999998888777799999999 899999999999999999999999999999999998865
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=93.08 Aligned_cols=214 Identities=13% Similarity=0.122 Sum_probs=139.7
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEE-----ecCceeeEEEEeCCCC-
Q 004554 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVS-----SSKYRLRTSVLQAPHG- 133 (745)
Q Consensus 75 ~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~-----------~~~--~~--g~~tv~-----~~r~k~R~tfie~~~~- 133 (745)
...|...|+|+|-.+.+.. +|++.|+..... .+. .+ .-+|+. ...-+..++|+-+| +
T Consensus 8 ~~~~~~~i~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP-Gh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKT-TLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP-GH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHH-HHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC-CH
Confidence 4567777999998875543 443333432110 010 11 222322 11224678999998 5
Q ss_pred -C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhh
Q 004554 134 -D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISS 209 (745)
Q Consensus 134 -d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~-~~~kK~lk~~ 209 (745)
+ +..|+-.+..||.+|||+|+..| +...+.+.|..+...|+|.++.|++.+|. +.... ..+++.++.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 3 46788888899999999999954 66778899999999999999889998885 11111 2244455555
Q ss_pred ccccc-C-CCCeeEEeCCHH------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEE
Q 004554 210 LTSEF-P-EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLH 275 (745)
Q Consensus 210 f~~e~-~-~~~Klf~l~~~~------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~ 275 (745)
+...- + ....++++|..+ .+..|+..|....+.|-.+.+....|..+++-.++. .| .+++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g-----~G-tvv~ 231 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISG-----RG-TVVT 231 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCC-----ce-EEEE
Confidence 54422 1 235677777533 468899999887665655555444566776654432 35 4599
Q ss_pred EEEeCCCCCCCCeEEeCCCCc---eeeceeec
Q 004554 276 GYLRAHCLSVNQLVHISGAGD---FQLGKIEI 304 (745)
Q Consensus 276 GyvRG~~l~~n~lVHIpG~GD---Fqi~~I~~ 304 (745)
|.|....++.|+.|.|.+.|. .+|.+|+.
T Consensus 232 G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~ 263 (396)
T PRK12735 232 GRVERGIVKVGDEVEIVGIKETQKTTVTGVEM 263 (396)
T ss_pred EEEEecEEeCCCEEEEecCCCCeEEEEEEEEE
Confidence 999999999999999887654 34666654
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-06 Score=92.23 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=140.2
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEE-----ecCceeeEEEEeCCCC-
Q 004554 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVS-----SSKYRLRTSVLQAPHG- 133 (745)
Q Consensus 75 ~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~-----------~~~--~~--g~~tv~-----~~r~k~R~tfie~~~~- 133 (745)
...|.+-|+|+|-...+.. +|++.|+..... .+. .+ .-+|+. ....+++++|+-+| .
T Consensus 8 ~~~~~~~i~i~Gh~d~GKS-TL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP-Gh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKT-TLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP-GH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHH-HHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC-Ch
Confidence 4567777999999876653 453333533110 011 01 223332 12224688999998 4
Q ss_pred -C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhh-hHHHHHHHHhh
Q 004554 134 -D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK-RKDLKKMCISS 209 (745)
Q Consensus 134 -d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk-~~~~kK~lk~~ 209 (745)
+ +..|+.++..||.+|||+||.. ++...+.++|..+...|+|.+|.|++.+|. +... ...+++.++.+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~--------g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAAD--------GPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCC--------CCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3 5678889999999999999994 477889999999999999999999999995 1111 12345566666
Q ss_pred cccccCC--CCeeEEeCCHH--------------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCC
Q 004554 210 LTSEFPE--DCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNS 267 (745)
Q Consensus 210 f~~e~~~--~~Klf~l~~~~--------------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~ 267 (745)
|...-++ ...++++|..+ .+..|+-.|....+.|....+....|.++++...+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g---- 233 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITG---- 233 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCC----
Confidence 5543221 24566655211 246777777776655555545555677887765432
Q ss_pred CCceEEEEEEEeCCCCCCCCeEEeCCCCc---eeeceeecc
Q 004554 268 GKCTLLLHGYLRAHCLSVNQLVHISGAGD---FQLGKIEIL 305 (745)
Q Consensus 268 ~~~~l~v~GyvRG~~l~~n~lVHIpG~GD---Fqi~~I~~~ 305 (745)
.|+ +++|-|....+++|..|.|.+.+. -+|.+|+.-
T Consensus 234 -~G~-Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~ 272 (409)
T CHL00071 234 -RGT-VATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF 272 (409)
T ss_pred -CeE-EEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc
Confidence 354 599999988899999999865433 356666653
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.5e-06 Score=91.49 Aligned_cols=213 Identities=14% Similarity=0.135 Sum_probs=139.6
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEE-----ecCceeeEEEEeCCCC--
Q 004554 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVS-----SSKYRLRTSVLQAPHG-- 133 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~-----------~~~--~~--g~~tv~-----~~r~k~R~tfie~~~~-- 133 (745)
..|.+-|+|+|-.+++.. +|+..|++.... .+. .+ .-+|+. ....+++++|+-+| .
T Consensus 9 ~k~~~ni~i~Ghvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP-Gh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKT-TLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP-GHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHH-HHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC-CHH
Confidence 466788999998876543 443333442110 110 01 112222 11225689999998 5
Q ss_pred C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHH-HHHHHHhhc
Q 004554 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKD-LKKMCISSL 210 (745)
Q Consensus 134 d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~-~kK~lk~~f 210 (745)
+ +..|+-.+..||.+|||+|+..| +...+.+.|..+...|+|.+|.|++.+|. +.....+ +++.++.++
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 3 57788889999999999999854 67789999999999999999999999985 1112222 344555554
Q ss_pred ccccC--CCCeeEEeCCHH----------HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 004554 211 TSEFP--EDCKFYAADTKD----------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL 278 (745)
Q Consensus 211 ~~e~~--~~~Klf~l~~~~----------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv 278 (745)
...-. ....++++|..+ .+..|+..|...-+.|-..-+....|.++++-..+. .|+ +++|.|
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g-----~G~-Vv~G~v 232 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITG-----RGT-VVTGRV 232 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCC-----cEE-EEEEEE
Confidence 43322 245788888644 367888888776555544444445567777665432 354 599999
Q ss_pred eCCCCCCCCeEEeCCCCc---eeeceeec
Q 004554 279 RAHCLSVNQLVHISGAGD---FQLGKIEI 304 (745)
Q Consensus 279 RG~~l~~n~lVHIpG~GD---Fqi~~I~~ 304 (745)
....++.|+.|-|.+.|. ..|.+|+.
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~V~sI~~ 261 (394)
T PRK12736 233 ERGTVKVGDEVEIVGIKETQKTVVTGVEM 261 (394)
T ss_pred eecEEecCCEEEEecCCCCeEEEEEEEEE
Confidence 999999999998866654 45666664
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-06 Score=96.59 Aligned_cols=209 Identities=12% Similarity=0.133 Sum_probs=143.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC----CC--cceEEEec------CceeeEEEEeCCCC--C-hHHHHhHHhh
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT----GA--LSSTVSSS------KYRLRTSVLQAPHG--D-LVGCMEMAKV 144 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~----~~--g~~tv~~~------r~k~R~tfie~~~~--d-l~~mLD~aKv 144 (745)
.||+++|-.+.+.. +| ++.|++.+. ++ ..+|+..+ ...++++|+-+| + + +..|+-.+.-
T Consensus 1 ~ii~~~GhvdhGKT-tL----i~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtP-Ghe~fi~~m~~g~~~ 74 (614)
T PRK10512 1 MIIATAGHVDHGKT-TL----LQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVP-GHEKFLSNMLAGVGG 74 (614)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECC-CHHHHHHHHHHHhhc
Confidence 37888888776654 67 666664321 11 23343321 013579999998 5 3 4778999999
Q ss_pred cceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccCCCCeeEEe
Q 004554 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFPEDCKFYAA 223 (745)
Q Consensus 145 ADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk-~~~~kK~lk~~f~~e~~~~~Klf~l 223 (745)
||++|||+|+.. ++...+.+.|.+|...|.|.+|.|+|.+|...+. ...++..++..+.........+|.+
T Consensus 75 ~D~~lLVVda~e--------g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~V 146 (614)
T PRK10512 75 IDHALLVVACDD--------GVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVT 146 (614)
T ss_pred CCEEEEEEECCC--------CCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999999994 4778899999999999999999999999961122 2345566666655443335678888
Q ss_pred CC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeec
Q 004554 224 DT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLG 300 (745)
Q Consensus 224 ~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~ 300 (745)
|. ..-+..|...|... +.+..+.+....|.+|++--++ ..| .+|+|.|....+++|+.|-|.+.| ..+|.
T Consensus 147 SA~tG~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~-----G~G-tVvtGtv~sG~l~~Gd~v~i~p~~~~~~Vr 219 (614)
T PRK10512 147 AATEGRGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVK-----GAG-LVVTGTALSGEVKVGDTLWLTGVNKPMRVR 219 (614)
T ss_pred eCCCCCCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccC-----CCe-EEEEEEEecceEecCCEEEEcCCCCcEEEE
Confidence 84 33355666666654 3445556666778888865332 234 579999999999999999887655 46777
Q ss_pred eeeccCCCC
Q 004554 301 KIEILKDPF 309 (745)
Q Consensus 301 ~I~~~~DP~ 309 (745)
+|..-..|+
T Consensus 220 sIq~~~~~v 228 (614)
T PRK10512 220 GLHAQNQPT 228 (614)
T ss_pred EEecCCcCC
Confidence 777655443
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-05 Score=90.02 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=114.0
Q ss_pred eeeEEEEeCCCC--C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-
Q 004554 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK- 197 (745)
Q Consensus 122 k~R~tfie~~~~--d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K- 197 (745)
+.+++|+-+| + + +..|+..+..||.+|||+|+..| +...+.+++..+...|+|.++.+++.+|.-.+
T Consensus 74 ~~~i~~iDtP-G~~~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~ 144 (396)
T PRK00049 74 KRHYAHVDCP-GHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred CeEEEEEECC-CHHHHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcchH
Confidence 5689999998 4 3 56678888999999999999954 77789999999999999998889999985111
Q ss_pred hh-HHHHHHHHhhcccc-c-CCCCeeEEeCCHH------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEecc
Q 004554 198 KR-KDLKKMCISSLTSE-F-PEDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVA 262 (745)
Q Consensus 198 k~-~~~kK~lk~~f~~e-~-~~~~Klf~l~~~~------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~ 262 (745)
.. ...++.++.+|... + +....++++|..+ .+..|+..|....+.|-..-+.-..|..+++-..+
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~ 224 (396)
T PRK00049 145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSIS 224 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeC
Confidence 11 22445566666442 2 2345667777532 45788889888655554444444455666655432
Q ss_pred CCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCce
Q 004554 263 DDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDF 297 (745)
Q Consensus 263 ~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDF 297 (745)
. .| .+++|.|....+++|+.|.|.+.+++
T Consensus 225 g-----~G-~Vv~G~v~~G~i~~gd~v~i~p~~~~ 253 (396)
T PRK00049 225 G-----RG-TVVTGRVERGIIKVGEEVEIVGIRDT 253 (396)
T ss_pred C-----ce-EEEEEEEeeeEEecCCEEEEeecCCC
Confidence 2 35 46899999999999999999776543
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=89.72 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=114.8
Q ss_pred eeeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 004554 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (745)
Q Consensus 122 k~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~K 197 (745)
+++++||.|| .- +..|+-.+..||++|||+||..| +....|.+.|.++.+.|++.+|.||+.+|. +..
T Consensus 116 ~~~i~~IDtP-GH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 116 KRHVSFVDCP-GHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cceEeeeeCC-CHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHHcCCCcEEEEEecccccCHH
Confidence 4689999998 43 56889999999999999999942 145678899999999999999999999985 112
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccC--CC-CCCCceE
Q 004554 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD--DC-NSGKCTL 272 (745)
Q Consensus 198 k~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~--~~-~~~~~~l 272 (745)
........++.++...+..+..+|++|. -..+..|+-.|...-+.|-...+....|.++|.-.+.. .. .+..| .
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~G-t 266 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKG-G 266 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCce-E
Confidence 2233444555555444456789999994 33466777777754444433335566677787532221 10 11123 5
Q ss_pred EEEEEEeCCCCCCCCeEEeCCCC
Q 004554 273 LLHGYLRAHCLSVNQLVHISGAG 295 (745)
Q Consensus 273 ~v~GyvRG~~l~~n~lVHIpG~G 295 (745)
+++|.|....+++|+.|.|...|
T Consensus 267 Vv~G~v~~G~l~~Gd~v~i~P~~ 289 (460)
T PTZ00327 267 VAGGSILQGVLKVGDEIEIRPGI 289 (460)
T ss_pred EEEEEEeeceEecCCEEEEccCc
Confidence 68999999999999999887543
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-05 Score=86.57 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=119.4
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK 198 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk 198 (745)
+++++|+-+|- .+ +..|+-.+..||.+|||+|+..| ....+++.|..+...|+|.++.|++.+|. +...
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~ 145 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE 145 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH
Confidence 56899999982 13 56788888999999999999954 67789999999999999999999999985 1111
Q ss_pred h-HHHHHHHHhhcccccCC--CCeeEEeCCH----------HHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCC
Q 004554 199 R-KDLKKMCISSLTSEFPE--DCKFYAADTK----------DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC 265 (745)
Q Consensus 199 ~-~~~kK~lk~~f~~e~~~--~~Klf~l~~~----------~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~ 265 (745)
. ..+++.++.++...-.. ...+++.|.. +.+..|+..|....+.|-.+-+.-..|.++++-..+.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g-- 223 (394)
T TIGR00485 146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITG-- 223 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCC--
Confidence 1 22344555555433222 2577877742 1346778877776665656655555577777664432
Q ss_pred CCCCceEEEEEEEeCCCCCCCCeEEeCCCC---ceeeceeecc
Q 004554 266 NSGKCTLLLHGYLRAHCLSVNQLVHISGAG---DFQLGKIEIL 305 (745)
Q Consensus 266 ~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G---DFqi~~I~~~ 305 (745)
.| .+++|.|...-++.|..|.|.+.+ ...|.+|..-
T Consensus 224 ---~G-~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~ 262 (394)
T TIGR00485 224 ---RG-TVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF 262 (394)
T ss_pred ---ce-EEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC
Confidence 34 568999999999999999986543 4567777654
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-05 Score=89.71 Aligned_cols=206 Identities=16% Similarity=0.171 Sum_probs=134.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC----C--cceEE-------EecCceeeEEEEeCCCCC---hHHHHhHHh
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A--LSSTV-------SSSKYRLRTSVLQAPHGD---LVGCMEMAK 143 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~----~--g~~tv-------~~~r~k~R~tfie~~~~d---l~~mLD~aK 143 (745)
.+|+++|..+.+.. +| ++.|++.+.. + ..+|+ ..+ ..+++|+.+| .. +..|+..++
T Consensus 1 ~~I~iiG~~d~GKT-TL----i~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtP-Ghe~f~~~~~~g~~ 72 (581)
T TIGR00475 1 MIIATAGHVDHGKT-TL----LKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVP-GHEKFISNAIAGGG 72 (581)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECC-CHHHHHHHHHhhhc
Confidence 37899999887764 66 6666543211 1 22332 222 2689999998 42 567888899
Q ss_pred hcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccC-CCCeeE
Q 004554 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFP-EDCKFY 221 (745)
Q Consensus 144 vADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk-~~~~kK~lk~~f~~e~~-~~~Klf 221 (745)
-||.+|||+|++.| +...+++.|.+++..|+|+++.|+|..|...+. ...+.+.++..++.... .+..+|
T Consensus 73 ~aD~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 73 GIDAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred cCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 99999999999954 667899999999999999999999999851122 22345555555554322 267899
Q ss_pred EeCC-----HHHHHHHH-HHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC
Q 004554 222 AADT-----KDELHKFL-WLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295 (745)
Q Consensus 222 ~l~~-----~~e~~nL~-R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G 295 (745)
.+|. -.+..+.+ ..+.....+. -+....|..|++--... .| .+|+|.|....+++|..|-|-..|
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~~~~~~---~~~p~r~~Id~~f~v~G-----~G-tVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLESLDIKR---IQKPLRMAIDRAFKVKG-----AG-TVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhCCCcC---cCCCcEEEEEEEEecCC-----cE-EEEEEEEecceEecCCEEEECCCC
Confidence 9883 22333222 2222222211 13444577777653322 34 579999999999999999887655
Q ss_pred -ceeeceeeccCCCCC
Q 004554 296 -DFQLGKIEILKDPFP 310 (745)
Q Consensus 296 -DFqi~~I~~~~DP~p 310 (745)
..+|.+|..-..|+.
T Consensus 216 ~~~~Vr~iq~~~~~v~ 231 (581)
T TIGR00475 216 HEVRVKAIQAQNQDVE 231 (581)
T ss_pred ceEEEeEEEECCccCC
Confidence 577888876555443
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-05 Score=86.02 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=109.8
Q ss_pred eeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCcchh-
Q 004554 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK- 197 (745)
Q Consensus 123 ~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~f-d~eg~e~L~~l~~qGlP~vigvl~~L~~~~K- 197 (745)
++++|+-+| .. +..++..+..||.+|+|+|++.| + ..++.+.|..++..|++.++.|++.+|....
T Consensus 85 ~~i~liDtP-G~~~f~~~~~~~~~~~D~~llVVDa~~~--------~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 85 RRVSFVDAP-GHETLMATMLSGAALMDGAILVIAANEP--------CPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cEEEEEECC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 689999998 42 45677888889999999999953 4 6778889999999999999999999885111
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCC---CCCCceE
Q 004554 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC---NSGKCTL 272 (745)
Q Consensus 198 k~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~---~~~~~~l 272 (745)
......+.++..+...+..+..+|.+|. ...+..|...|...-+.|-...+....|.++++-.+.... .+..| .
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G-~ 234 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKG-G 234 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcc-e
Confidence 1122334444444433344677888884 3345566666665444444444555578888764332210 11223 4
Q ss_pred EEEEEEeCCCCCCCCeEEeCCCC
Q 004554 273 LLHGYLRAHCLSVNQLVHISGAG 295 (745)
Q Consensus 273 ~v~GyvRG~~l~~n~lVHIpG~G 295 (745)
+++|.|....+++|+.|.|..-|
T Consensus 235 Vv~G~v~~G~l~~gd~v~i~P~~ 257 (411)
T PRK04000 235 VIGGSLIQGVLKVGDEIEIRPGI 257 (411)
T ss_pred EEEEEEEeCEEecCCEEEEcCCc
Confidence 68999999999999999995333
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.1e-05 Score=87.25 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=114.8
Q ss_pred eeeEEEEeCCCC--C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 004554 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (745)
Q Consensus 122 k~R~tfie~~~~--d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk 198 (745)
+++++||-+| + + +..|+..+..||.+|||+||..| ....+.+.+..++..|+|..+.+++.+|.-.+.
T Consensus 143 ~~~i~liDtP-Gh~~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~ 213 (478)
T PLN03126 143 NRHYAHVDCP-GHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE 213 (478)
T ss_pred CcEEEEEECC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccCHH
Confidence 5799999998 4 3 57889999999999999999954 677899999999999999999999999851111
Q ss_pred --hHHHHHHHHhhcccc-cC-CCCeeEEeCCHH--------------------HHHHHHHHHhhccccCCccccCCCeEE
Q 004554 199 --RKDLKKMCISSLTSE-FP-EDCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLM 254 (745)
Q Consensus 199 --~~~~kK~lk~~f~~e-~~-~~~Klf~l~~~~--------------------e~~nL~R~I~~~k~r~l~WR~~rpYmL 254 (745)
...+++.++.++... |+ ....++++|..+ .+..|+-.|-...+-|-.+-+.-..|.
T Consensus 214 ~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~ 293 (478)
T PLN03126 214 ELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLA 293 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeE
Confidence 223445555555442 22 234555554211 245677777765444444445555677
Q ss_pred EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCcee
Q 004554 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQ 298 (745)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFq 298 (745)
.+++-.++. .| .+++|.|....+++|+.|.|...|+++
T Consensus 294 I~~vf~v~g-----~G-tVv~G~V~sG~i~~Gd~v~i~p~~~~~ 331 (478)
T PLN03126 294 VEDVFSITG-----RG-TVATGRVERGTVKVGETVDIVGLRETR 331 (478)
T ss_pred EEEEEEeCC-----ce-EEEEEEEEcCeEecCCEEEEecCCCce
Confidence 777664432 34 568999999999999999998888754
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.8e-05 Score=86.18 Aligned_cols=215 Identities=14% Similarity=0.138 Sum_probs=136.3
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEE-----EecCceeeEEEEeCCC-CC
Q 004554 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTV-----SSSKYRLRTSVLQAPH-GD 134 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~-----------~~~--~~--g~~tv-----~~~r~k~R~tfie~~~-~d 134 (745)
.-|.+.|+++|-.+.+.. +|++.|.+.... ++. ++ .-+|+ .....+++++|+-+|- .+
T Consensus 58 ~k~~~ni~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKT-TLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHH-HHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 466778999998775543 453333332111 111 11 11222 2222356899999982 23
Q ss_pred -hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhH-HHHHHHHhhcc
Q 004554 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRK-DLKKMCISSLT 211 (745)
Q Consensus 135 -l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~-~~kK~lk~~f~ 211 (745)
+..|+-.+..||++|||+||..| +...+.+.|..+..+|+|.+|.|++.+|. +.+... .+++.++.++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999854 67789999999999999999999999985 111222 23334544443
Q ss_pred cc-cC-CCCeeEEeCC------------HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 004554 212 SE-FP-EDCKFYAADT------------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (745)
Q Consensus 212 ~e-~~-~~~Klf~l~~------------~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (745)
.. ++ ...-++++|. ...+..|+..|...-+.|..+-+....|..+++-.++. .| .+++|-
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g-----~G-tVvtG~ 282 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQG-----RG-TVATGR 282 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCC-----ce-EEEEEE
Confidence 21 21 1233444332 23467888888887776666655555567777654322 34 569999
Q ss_pred EeCCCCCCCCeEEeCCCC-----ceeeceeecc
Q 004554 278 LRAHCLSVNQLVHISGAG-----DFQLGKIEIL 305 (745)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-----DFqi~~I~~~ 305 (745)
|...-+++|+.|-|-|.+ ..+|.+|+.-
T Consensus 283 v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~ 315 (447)
T PLN03127 283 VEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF 315 (447)
T ss_pred EEccEEecCCEEEEcccCCCCcEEEEEEEEEEE
Confidence 999999999999887542 3466666654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.6e-05 Score=85.28 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=109.9
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCcchh-
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK- 197 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~f-d~eg~e~L~~l~~qGlP~vigvl~~L~~~~K- 197 (745)
.++++|+-+|- .+ +..|+-.+..||.+|||+|++.| + ..++.+.|..++..|++.++.|++.+|....
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g--------~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP--------CPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC--------ccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 36899999982 12 56788888999999999999954 4 5678889999999999999999999985111
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCC---CCCCceE
Q 004554 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC---NSGKCTL 272 (745)
Q Consensus 198 k~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~---~~~~~~l 272 (745)
........++..+...+..+..+|.+|. ...+..|.-.|...-+.|-..-+....|..+++-.+.... .+..| .
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G-~ 229 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKG-G 229 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCce-e
Confidence 1222333444444333334567888883 3345566666665444444444566678888765432210 11123 4
Q ss_pred EEEEEEeCCCCCCCCeEEe-CC
Q 004554 273 LLHGYLRAHCLSVNQLVHI-SG 293 (745)
Q Consensus 273 ~v~GyvRG~~l~~n~lVHI-pG 293 (745)
+++|.|....+++|+.|.| |+
T Consensus 230 Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 230 VIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEEeCEEeCCCEEEEccC
Confidence 7899999999999999999 66
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=78.84 Aligned_cols=107 Identities=18% Similarity=0.315 Sum_probs=80.1
Q ss_pred ceeeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh
Q 004554 121 YRLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK 197 (745)
Q Consensus 121 ~k~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K 197 (745)
..++++||-|| .. +..|+-+++.||.+|+|+||.. ++...+.++|..++..|+| +|.||+.+|.-.+
T Consensus 68 ~~~~i~~iDtP-G~~~f~~~~~~~~~~~D~ailvVda~~--------g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 68 NNRKITLIDTP-GHEDFIKEMIRGLRQADIAILVVDAND--------GIQPQTEEHLKILRELGIP-IIVVLNKMDLIEK 137 (188)
T ss_dssp SSEEEEEEEES-SSHHHHHHHHHHHTTSSEEEEEEETTT--------BSTHHHHHHHHHHHHTT-S-EEEEEETCTSSHH
T ss_pred cccceeecccc-cccceeecccceecccccceeeeeccc--------ccccccccccccccccccc-eEEeeeeccchhh
Confidence 35899999998 54 5678899999999999999994 4889999999999999999 8999999996223
Q ss_pred hhHHHHHHHHhhcccccCCC----CeeEEeCC--HHHHHHHHHHHh
Q 004554 198 KRKDLKKMCISSLTSEFPED----CKFYAADT--KDELHKFLWLFK 237 (745)
Q Consensus 198 k~~~~kK~lk~~f~~e~~~~----~Klf~l~~--~~e~~nL~R~I~ 237 (745)
...++.+.++..|...++.+ ..++++|. ..-+..|+..|.
T Consensus 138 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 138 ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 44567777776665555422 46888884 223444555443
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00073 Score=77.24 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=117.1
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEEEeccCCcc--
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPTD-- 195 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~f--d~eg~e~L~~l~~qGlP~vigvl~~L~~~-- 195 (745)
..+++||-+|- .+ +..|+-++..||.+|||+||+.|.-+ .+| +-.|.+.|.++.+.|+|.+|.+++.+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e---~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFE---AGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCcee---cccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 57899999982 23 67899999999999999999976211 233 36899999999999999999999999831
Q ss_pred --h-hhhHHHHHHHHhhcccccC--CCCeeEEeCCHHH--------------HHHHHHHHhhccccCCccccCCCeEEEE
Q 004554 196 --L-KKRKDLKKMCISSLTSEFP--EDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQ 256 (745)
Q Consensus 196 --~-Kk~~~~kK~lk~~f~~e~~--~~~Klf~l~~~~e--------------~~nL~R~I~~~k~r~l~WR~~rpYmLad 256 (745)
. ..-..+++.++.+|...-. ....++++|..+. .-.|+..|-...+ |-.+.+.-..|..+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~-~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEP-PKRPVDKPLRLPLQ 239 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCC-CCcCCCCCeEEEEE
Confidence 1 1224567777777764322 2466777773111 1136666655432 33344444457777
Q ss_pred eeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 004554 257 KVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (745)
Q Consensus 257 r~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~ 305 (745)
++--.+. .| .+++|.|....+++|+.|.+.--| ..+|.+|+.-
T Consensus 240 ~v~~v~g-----~G-tvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~ 283 (446)
T PTZ00141 240 DVYKIGG-----IG-TVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH 283 (446)
T ss_pred EEEecCC-----ce-EEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec
Confidence 7654322 24 577999999999999988775434 3566666543
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.4e-05 Score=72.71 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----cceEEEecCceeeEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCc
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----g~~tv~~~r~k~R~tfie~~~~dl~~mLD~aKvADlVlllidas~g 157 (745)
|.+||+.+++.. +|++.|.........+- ...++-+|. .|+|+| +-..++|..|.-||+|++|.||+..
T Consensus 4 imliG~~g~GKT-TL~q~L~~~~~~~~KTq~i~~~~~~IDTPG-----EyiE~~-~~y~aLi~ta~dad~V~ll~dat~~ 76 (143)
T PF10662_consen 4 IMLIGPSGSGKT-TLAQALNGEEIRYKKTQAIEYYDNTIDTPG-----EYIENP-RFYHALIVTAQDADVVLLLQDATEP 76 (143)
T ss_pred EEEECCCCCCHH-HHHHHHcCCCCCcCccceeEecccEEECCh-----hheeCH-HHHHHHHHHHhhCCEEEEEecCCCC
Confidence 678898887665 56222232221111111 334455554 589998 8899999999999999999999953
Q ss_pred cccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--hhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHH
Q 004554 158 SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--LKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFL 233 (745)
Q Consensus 158 ~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~--~Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~ 233 (745)
+..+--.|.+++. ..||||+|++|.. ......+++.|+..-++ ++|.+|. ..-+..|.
T Consensus 77 --------~~~~pP~fa~~f~----~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~------~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 77 --------RSVFPPGFASMFN----KPVIGVITKIDLPSDDANIERAKKWLKNAGVK------EIFEVSAVTGEGIEELK 138 (143)
T ss_pred --------CccCCchhhcccC----CCEEEEEECccCccchhhHHHHHHHHHHcCCC------CeEEEECCCCcCHHHHH
Confidence 5555566666654 5799999999962 23345577777777553 5688874 33344555
Q ss_pred HHH
Q 004554 234 WLF 236 (745)
Q Consensus 234 R~I 236 (745)
++|
T Consensus 139 ~~L 141 (143)
T PF10662_consen 139 DYL 141 (143)
T ss_pred HHH
Confidence 554
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00033 Score=71.29 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=80.7
Q ss_pred eeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-h
Q 004554 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-K 198 (745)
Q Consensus 123 ~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K-k 198 (745)
++++|+-+| .. +..++.++..+|.+|+|+|++.+ +....++++|..+...|+|.++.|++.+|...+ +
T Consensus 83 ~~i~~iDtP-G~~~~~~~~~~~~~~~D~~llVvd~~~~-------~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 83 RHVSFVDCP-GHEILMATMLSGAAVMDGALLLIAANEP-------CPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cEEEEEECC-ChHHHHHHHHHhhhcCCEEEEEEECCCC-------CCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHH
Confidence 689999998 43 56788889999999999999842 245678889999999999989999999996111 2
Q ss_pred hHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccC
Q 004554 199 RKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTV 243 (745)
Q Consensus 199 ~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~ 243 (745)
.....+.++..+......+..+|.+|. ...+..|...|+..-+.|
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 233445566555544334567888884 344667777777655554
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00087 Score=68.20 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=72.7
Q ss_pred eeeEEEEeCCCC--C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 004554 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (745)
Q Consensus 122 k~R~tfie~~~~--d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~K 197 (745)
+++++|+-+| + + +..++-++..||.+|||+|++. ++...+.++++.+..+|+|.+|.|++.+|. ...
T Consensus 64 ~~~i~~iDtP-G~~~~~~~~~~~~~~~D~~ilVvda~~--------g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 134 (195)
T cd01884 64 NRHYAHVDCP-GHADYIKNMITGAAQMDGAILVVSATD--------GPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE 134 (195)
T ss_pred CeEEEEEECc-CHHHHHHHHHHHhhhCCEEEEEEECCC--------CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH
Confidence 5789999998 4 3 4668888999999999999995 477889999999999999999999999985 112
Q ss_pred hh-HHHHHHHHhhccccc--CCCCeeEEeCCH
Q 004554 198 KR-KDLKKMCISSLTSEF--PEDCKFYAADTK 226 (745)
Q Consensus 198 k~-~~~kK~lk~~f~~e~--~~~~Klf~l~~~ 226 (745)
.. ..+++.+++++...- +.+..++++|..
T Consensus 135 ~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~ 166 (195)
T cd01884 135 ELLELVEMEVRELLSKYGFDGDNTPIVRGSAL 166 (195)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEEeeCc
Confidence 22 235566666665432 235778888853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0014 Score=78.98 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=116.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEec--CceeeEEEEeCCC-CChHHHHh-HH
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSS--KYRLRTSVLQAPH-GDLVGCME-MA 142 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~--r~k~R~tfie~~~-~dl~~mLD-~a 142 (745)
..|.+|+|+|..+.+.. +| +..++...... +...+... ....+|+|+-+|- .++..|.. .+
T Consensus 242 ~r~p~V~IvGhvdvGKT-SL----ld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 242 NRPPIVTILGHVDHGKT-TL----LDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred ccCCEEEEECCCCCCHH-HH----HHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 45678999999887664 56 44443222111 22222221 1247899999972 24556554 78
Q ss_pred hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCee
Q 004554 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKF 220 (745)
Q Consensus 143 KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~--f~~e~~~~~Kl 220 (745)
..||++|||+|++.| +...+++.|..++..|+| +|.|++.+|........+++.|..+ +...+.....+
T Consensus 317 ~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpv 387 (742)
T CHL00189 317 NVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPM 387 (742)
T ss_pred HHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceE
Confidence 999999999999854 677899999999999999 7778898885112223345555432 11222223568
Q ss_pred EEeCC--HHHHHHHHHHHhhcccc-CCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCce
Q 004554 221 YAADT--KDELHKFLWLFKEQRLT-VPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDF 297 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~~~k~r-~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDF 297 (745)
+.+|. ...+..|+-.|+..... .+.-.... ...+--++..-+ ...-.+++|-|....|++|.-|.+..
T Consensus 388 v~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~-~~~g~V~e~~iD----~~~G~V~~~~V~sGtLr~GD~vv~g~---- 458 (742)
T CHL00189 388 IPISASQGTNIDKLLETILLLAEIEDLKADPTQ-LAQGIILEAHLD----KTKGPVATILVQNGTLHIGDIIVIGT---- 458 (742)
T ss_pred EEEECCCCCCHHHHHHhhhhhhhhhcccCCCCC-CceEEEEEEEEc----CCCceEEEEEEEcCEEecCCEEEECC----
Confidence 88884 22344444444432211 11111111 122222221111 11235677777766788888886654
Q ss_pred eeceeeccC
Q 004554 298 QLGKIEILK 306 (745)
Q Consensus 298 qi~~I~~~~ 306 (745)
...+|..+-
T Consensus 459 ~~gkVr~m~ 467 (742)
T CHL00189 459 SYAKIRGMI 467 (742)
T ss_pred cceEEEEEE
Confidence 234555543
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0044 Score=70.38 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=108.8
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch--h
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL--K 197 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~--K 197 (745)
+.+++|+-+|- .++ ..|+..++.||.+|||+|++.. .++...+.+.+..+...|.|.++.|++.+|... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~------~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 156 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA------GGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDE 156 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC------CCCCcchHHHHHHHHHcCCCeEEEEEEccccccccH
Confidence 56899998872 344 4577888999999999999841 146677888888899999998999999988511 1
Q ss_pred h-hHHHHHHHHhhcccccC--CCCeeEEeCCHH-----H---------HHHHHHHHhhccccCCccccCCCeEEEEeeEe
Q 004554 198 K-RKDLKKMCISSLTSEFP--EDCKFYAADTKD-----E---------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (745)
Q Consensus 198 k-~~~~kK~lk~~f~~e~~--~~~Klf~l~~~~-----e---------~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~ 260 (745)
. ...+++.++.++...-. ....+|.+|..+ + ...|+-.|....+ |-.+-+.-..|..+++-.
T Consensus 157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~-~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKP-PEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCC-CccccCCCcEEEEEEEEe
Confidence 1 12344555555433211 135678777311 1 1235555554432 223323333466676554
Q ss_pred ccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeecc
Q 004554 261 VADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEIL 305 (745)
Q Consensus 261 ~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDFqi~~I~~~ 305 (745)
... .| .+++|.|....+++|..|.| |+--..+|.+|+.-
T Consensus 236 ~~g-----~G-~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~ 275 (425)
T PRK12317 236 ISG-----VG-TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH 275 (425)
T ss_pred eCC-----Ce-EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC
Confidence 322 34 57799999999999999987 54335777777754
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0045 Score=73.28 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=115.8
Q ss_pred eeeEEEEeCCC-CChH-HHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDLV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl~-~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
..+|+|+-+|- .|+. .+.-+++.||.+|||+||+.| ....+...|..+...|+| +|.|++.+|......
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a~~ 133 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPSARP 133 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCC-EEEEEECCCCCCcCH
Confidence 57899998872 3443 567788999999999999954 567889999999999999 467899998511222
Q ss_pred HHHHHHHHhhcccccCC----CCeeEEeCCHH------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccC
Q 004554 200 KDLKKMCISSLTSEFPE----DCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD 263 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~----~~Klf~l~~~~------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~ 263 (745)
..+...++..|...-.+ ...+++.|..+ .+..|+..|...-|.|...-+.-.-|++.++.+.+.
T Consensus 134 ~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~ 213 (594)
T TIGR01394 134 DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEY 213 (594)
T ss_pred HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCC
Confidence 34555555555321010 12366766433 366888888888887765444444577777765432
Q ss_pred CCCCCCceEEEEEEEeCCCCCCCCeEEeCCC-Cc---eeeceeecc
Q 004554 264 DCNSGKCTLLLHGYLRAHCLSVNQLVHISGA-GD---FQLGKIEIL 305 (745)
Q Consensus 264 ~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~-GD---Fqi~~I~~~ 305 (745)
.|.| ++|-|-...|++|+.|.+... |. ..|.+|...
T Consensus 214 -----~Grv-~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~ 253 (594)
T TIGR01394 214 -----LGRI-AIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGF 253 (594)
T ss_pred -----CceE-EEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEc
Confidence 3554 788888888999999998765 43 456666543
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=74.44 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=116.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE-------EEecCceeeEEEEeCCC-CChHHHHh-HHhhc
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST-------VSSSKYRLRTSVLQAPH-GDLVGCME-MAKVA 145 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---g~~t-------v~~~r~k~R~tfie~~~-~dl~~mLD-~aKvA 145 (745)
-|.+|+|+|..+.+.. +| +..|++..... +.+| +.... .++++|+-+|- .++.+|.. .+..|
T Consensus 86 r~p~V~I~Ghvd~GKT-SL----l~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKT-SL----LDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred CCCEEEEECCCCCCHH-HH----HHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccC
Confidence 3457899999987765 66 55554333221 2233 33222 23899999872 35666655 68999
Q ss_pred ceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh-cc-cccCCCCeeEEe
Q 004554 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS-LT-SEFPEDCKFYAA 223 (745)
Q Consensus 146 DlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~-f~-~e~~~~~Klf~l 223 (745)
|++|||+|++.| ....+.+.|+.+...|+| ++.+++.+|........+++.++.. +. ..+.....+|..
T Consensus 160 DiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 160 DIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred CEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 999999999844 678899999999999999 7888898885111122344444432 11 122223568888
Q ss_pred CC--HHHHHHHHHHHhhccc-cCCcc-ccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCC
Q 004554 224 DT--KDELHKFLWLFKEQRL-TVPHW-RNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG 293 (745)
Q Consensus 224 ~~--~~e~~nL~R~I~~~k~-r~l~W-R~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG 293 (745)
|. ..-+..|+..|..+.. ..+.- .+...-+++.++...+. .| .+++|-|+...|++|..|.+..
T Consensus 231 SAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g-----~G-~v~~~~V~~GtL~~Gd~iv~~~ 298 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKG-----RG-PVATVLVQSGTLRVGDIVVVGA 298 (587)
T ss_pred ECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCC-----Cc-EEEEEEEEeCEEeCCCEEEECC
Confidence 73 2234445555543211 01110 12333445555544321 34 5689999888899999887643
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=61.13 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=83.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC-------------cceEEEecCceeeEEEEeCCCC-Ch-HHHHhHHhhc
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA-------------LSSTVSSSKYRLRTSVLQAPHG-DL-VGCMEMAKVA 145 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-------------g~~tv~~~r~k~R~tfie~~~~-dl-~~mLD~aKvA 145 (745)
+|+|+|.++.+.. +| ++.|++..... +..++..+. ...++|+-+|-. ++ ..++..+.-|
T Consensus 2 ~i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~a 75 (164)
T cd04171 2 IIGTAGHIDHGKT-TL----IKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGI 75 (164)
T ss_pred EEEEEecCCCCHH-HH----HHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcC
Confidence 6899999987765 66 55554322110 122222221 357888988731 22 3466677789
Q ss_pred ceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeC
Q 004554 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAAD 224 (745)
Q Consensus 146 DlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K-k~~~~kK~lk~~f~~e~~~~~Klf~l~ 224 (745)
|.+|+|+|++. ++..+.++.+..++..|.+.++.|++..|.... ......+.++..+......+..+|.+|
T Consensus 76 d~ii~V~d~~~--------~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 76 DLVLLVVAADE--------GIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred CEEEEEEECCC--------CccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 99999999984 366777888888888898778899999885112 123344555555554322356788888
Q ss_pred C
Q 004554 225 T 225 (745)
Q Consensus 225 ~ 225 (745)
.
T Consensus 148 a 148 (164)
T cd04171 148 A 148 (164)
T ss_pred C
Confidence 4
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.004 Score=75.56 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=117.8
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE-------EEecCceeeEEEEeCCC-CChHHHHh-HHhh
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST-------VSSSKYRLRTSVLQAPH-GDLVGCME-MAKV 144 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---g~~t-------v~~~r~k~R~tfie~~~-~dl~~mLD-~aKv 144 (745)
.-|-+|+|+|..+.+.. +| +..|+...... +.+| +..+ .++|+|+-+|- .++..|.. .+.+
T Consensus 288 ~R~pvV~ImGhvd~GKT-SL----l~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~ 360 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKT-SL----LDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQV 360 (787)
T ss_pred cCCCEEEEECCCCCCHH-HH----HHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhh
Confidence 45667899998876654 56 55444332221 2233 3333 36899999872 45666666 6899
Q ss_pred cceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCeeEE
Q 004554 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYA 222 (745)
Q Consensus 145 ADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~--f~~e~~~~~Klf~ 222 (745)
||++|||+|+..| +..++++.|+.+...|+| +|.|++.+|........++..|... +-..+.....+|.
T Consensus 361 aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 361 TDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred CCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEE
Confidence 9999999999854 778899999999999999 8888998885111122344433321 1111222367888
Q ss_pred eCC--HHHHHHHHHHHhhc----cccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCc
Q 004554 223 ADT--KDELHKFLWLFKEQ----RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGD 296 (745)
Q Consensus 223 l~~--~~e~~nL~R~I~~~----k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GD 296 (745)
+|. ..-+..|+..|... ..+.-. +..+-.++.+....+ ....+++|-|....|++|..|.+ |.
T Consensus 432 vSAktG~GI~eLle~I~~~~e~~~l~~~~--~~~~~g~V~es~~dk------g~G~v~~v~V~sGtLk~Gd~vv~---g~ 500 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQAEVLELKANP--DRPARGTVIEAKLDK------GRGPVATVLVQNGTLKVGDIVVA---GT 500 (787)
T ss_pred EeCCCCCCchHHHHhhhhhhhhhhcccCC--CCCcEEEEEEEEEcC------CCeEEEEEEEecCeEecCCEEEE---CC
Confidence 884 22233444444321 111100 111222222322211 22356888888888999888866 22
Q ss_pred eeeceeeccCC
Q 004554 297 FQLGKIEILKD 307 (745)
Q Consensus 297 Fqi~~I~~~~D 307 (745)
...+|..+.+
T Consensus 501 -~~gkVr~m~~ 510 (787)
T PRK05306 501 -TYGRVRAMVD 510 (787)
T ss_pred -cEEEEEEEEC
Confidence 3456666554
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0085 Score=68.09 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=108.6
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-c-hh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-D-LK 197 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~-~K 197 (745)
+.+++|+-+|- .+ +..|+..++-||.+|||+|++.|. ......+.+.+..++..|.+.++.|++.+|. + .+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~-----~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE-----FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC-----cccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 46889999872 23 346788889999999999999641 1133456677777788899999999999885 1 01
Q ss_pred -hhHHHHHHHHhhcccc-c-CCCCeeEEeCCHHH--------------HHHHHHHHhhccccCCccccCCC-eEEEEeeE
Q 004554 198 -KRKDLKKMCISSLTSE-F-PEDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRP-FLMAQKVD 259 (745)
Q Consensus 198 -k~~~~kK~lk~~f~~e-~-~~~~Klf~l~~~~e--------------~~nL~R~I~~~k~r~l~WR~~rp-YmLadr~e 259 (745)
....+++.++.++... + +....++.+|..+. ...|+..|....+. -. ....| -|..+++-
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~-~~-~~~~p~r~~i~~v~ 236 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPP-EK-PTDKPLRIPIQDVY 236 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCC-CC-ccCCCcEEEEEEEE
Confidence 1223455555554332 1 12356777773211 22577888655432 22 23344 46677665
Q ss_pred eccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 004554 260 VVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (745)
Q Consensus 260 ~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~~ 306 (745)
..+. .| .+++|.|....+++|+.|.|.-.| ..+|.+|+.-.
T Consensus 237 ~~~g-----~G-~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~ 278 (426)
T TIGR00483 237 SITG-----VG-TVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH 278 (426)
T ss_pred ecCC-----Ce-EEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC
Confidence 4322 34 458999999999999999884434 45677776543
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.004 Score=64.79 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=59.6
Q ss_pred eeeEEEEeCCCCC---hHHHHhHHh--hcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch
Q 004554 122 RLRTSVLQAPHGD---LVGCMEMAK--VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL 196 (745)
Q Consensus 122 k~R~tfie~~~~d---l~~mLD~aK--vADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~ 196 (745)
.+.++|+-+| +. +..|+-++. .+|++|+|+|+..| +...+.+++..++.+|+| ++.|++.+|.-.
T Consensus 83 ~~~i~liDtp-G~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~ 152 (224)
T cd04165 83 SKLVTFIDLA-GHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALALNIP-VFVVVTKIDLAP 152 (224)
T ss_pred CcEEEEEECC-CcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 4689999998 44 344565554 79999999999854 678899999999999999 788899998511
Q ss_pred h-hhHHHHHHHHhhcc
Q 004554 197 K-KRKDLKKMCISSLT 211 (745)
Q Consensus 197 K-k~~~~kK~lk~~f~ 211 (745)
+ ....+++.++..+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 2 23455666666554
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0063 Score=68.83 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=108.2
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch--h
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL--K 197 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~--K 197 (745)
+++++|+-+|- .++ ..|+..+..||.+|||+||+.| +...+.+.+.++...|+|.+|.|++.+|... .
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccchH
Confidence 57899999872 244 5789999999999999999954 6678899999999999999999999998511 1
Q ss_pred h-hHHHHHHHHhhcccccCCCCeeEEeCCHH--------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEecc
Q 004554 198 K-RKDLKKMCISSLTSEFPEDCKFYAADTKD--------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVA 262 (745)
Q Consensus 198 k-~~~~kK~lk~~f~~e~~~~~Klf~l~~~~--------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~ 262 (745)
. ....+..++.++...-.....++++|..+ +...|+-.|....+. ....+.-..|..+++.-.
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~-~~~~~~p~r~~i~~v~~~- 228 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVE-RDAQDLPLRFPVQYVNRP- 228 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCC-CCcCCCCcccceEEEeec-
Confidence 1 12244444444332222245677777311 123466666655432 233333333445554211
Q ss_pred CCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccCC
Q 004554 263 DDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILKD 307 (745)
Q Consensus 263 ~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDFqi~~I~~~~D 307 (745)
. ....-++|.|...-+++|+.|.| |+-=..+|.+|+.-..
T Consensus 229 ~-----~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~ 269 (406)
T TIGR02034 229 N-----LDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDG 269 (406)
T ss_pred C-----CCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCc
Confidence 0 00122678888888999998885 6533567777765443
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0077 Score=57.99 Aligned_cols=144 Identities=12% Similarity=0.149 Sum_probs=85.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEec-CceeeEEEEeCCCCC--hHHHHh-HHhhcc
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSS-KYRLRTSVLQAPHGD--LVGCME-MAKVAD 146 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~-r~k~R~tfie~~~~d--l~~mLD-~aKvAD 146 (745)
+|+|+|.++.+.. +| +..|+...... +...+... .....++|+.+| .. +..+.+ ....||
T Consensus 2 ~i~iiG~~~~GKt-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtp-G~~~~~~~~~~~~~~~d 75 (168)
T cd01887 2 VVTVMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTP-GHEAFTNMRARGASLTD 75 (168)
T ss_pred EEEEEecCCCCHH-HH----HHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCC-CcHHHHHHHHHHHhhcC
Confidence 4899999987765 56 44443322111 11222221 024688999987 43 445544 668999
Q ss_pred eEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc---ccCCCCeeEEe
Q 004554 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS---EFPEDCKFYAA 223 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~---e~~~~~Klf~l 223 (745)
++|+++|++.+ ...+++++++.++..|.| ++.|+++.|........+...++.+... .+.....++..
T Consensus 76 ~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 76 IAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred EEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEe
Confidence 99999999853 456788899999999998 6778898885101112233333332211 12234577777
Q ss_pred CC--HHHHHHHHHHHhhc
Q 004554 224 DT--KDELHKFLWLFKEQ 239 (745)
Q Consensus 224 ~~--~~e~~nL~R~I~~~ 239 (745)
|. ...+..|.-.|..+
T Consensus 147 Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 147 SAKTGEGIDDLLEAILLL 164 (168)
T ss_pred ecccCCCHHHHHHHHHHh
Confidence 73 33455555555443
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.018 Score=66.53 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=108.8
Q ss_pred eeeEEEEeCC-CCCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-
Q 004554 122 RLRTSVLQAP-HGDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK- 198 (745)
Q Consensus 122 k~R~tfie~~-~~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk- 198 (745)
+++++||-+| +.++ ..|+-.++.||++|||+||..| +...+.+.+.++...|++.+|.|++.+|.....
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCCCceEEEEEeeccccchh
Confidence 4689999987 2344 4788889999999999999954 666778888889999999999999999851011
Q ss_pred --hHHHHHHHHhhcccc-cCCCCeeEEeCCH--------H------HHHHHHHHHhhccccCCccccCCCeEEEEeeEec
Q 004554 199 --RKDLKKMCISSLTSE-FPEDCKFYAADTK--------D------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV 261 (745)
Q Consensus 199 --~~~~kK~lk~~f~~e-~~~~~Klf~l~~~--------~------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~ 261 (745)
...+++.++.++... +.....++++|.. + +...|+-.|....+ |-.+.+.-..|..+++.-.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~-~~~~~~~p~r~~I~~v~~~ 256 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDI-QRVVDAQPFRFPVQYVNRP 256 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCC-CCCCCCCCceeeEEEEEec
Confidence 123444444433221 1125778888731 1 11235555555433 3334333334556665311
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCCC
Q 004554 262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDPF 309 (745)
Q Consensus 262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~~DP~ 309 (745)
.- ...+ +.|.|....+.+|+.|.|--.| ..+|.+|..-..|+
T Consensus 257 ~~---~~~g---~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v 299 (474)
T PRK05124 257 NL---DFRG---YAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDL 299 (474)
T ss_pred CC---cccc---eEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccc
Confidence 00 0011 5688888888999888665445 67888888765554
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.027 Score=64.58 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=110.5
Q ss_pred eeeEEEEeCCCC--C-hHHHHhHHhhcceEEEEeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCcc
Q 004554 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPTD 195 (745)
Q Consensus 122 k~R~tfie~~~~--d-l~~mLD~aKvADlVlllidas~g-~~~~~~~~fd--~eg~e~L~~l~~qGlP~vigvl~~L~~~ 195 (745)
+++++||.+| . | +..|+-.+..||.+|||+||..| ++ .+|+ ..+.+.+.++...|+|.+|.+++.+|..
T Consensus 84 ~~~i~liDtP-Gh~df~~~~~~g~~~aD~aIlVVda~~G~~e----~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAP-GHRDFIKNMITGTSQADCAVLIIDSTTGGFE----AGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECC-CHHHHHHHHHhhhhhccEEEEEEEcccCcee----cccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 5799999998 4 3 56788999999999999999965 11 1232 6889999999999999999999999841
Q ss_pred ---h-hh-hHHHHHHHHhhccccc--CCCCeeEEeCCHH--------H------HHHHHHHHhhccccCCccccCCCeEE
Q 004554 196 ---L-KK-RKDLKKMCISSLTSEF--PEDCKFYAADTKD--------E------LHKFLWLFKEQRLTVPHWRNQRPFLM 254 (745)
Q Consensus 196 ---~-Kk-~~~~kK~lk~~f~~e~--~~~~Klf~l~~~~--------e------~~nL~R~I~~~k~r~l~WR~~rpYmL 254 (745)
. +. -..+.+.++.++...- +....++.+|..+ + .-.|+-.|....+ |-.+.+.---|.
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~~-p~~~~~~plr~~ 237 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINE-PKRPSDKPLRLP 237 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcCC-CccccCCCcEEE
Confidence 1 11 2345666776665432 2235566666311 0 1135555554432 333333222344
Q ss_pred EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 004554 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (745)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~~ 306 (745)
++++--.+ ..| .+++|-|-...+++|+.|-+.-.| -.+|.+|+.-.
T Consensus 238 I~~v~~~~-----g~G-~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~ 284 (447)
T PLN00043 238 LQDVYKIG-----GIG-TVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHH 284 (447)
T ss_pred EEEEEEeC-----CcE-EEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECC
Confidence 45443222 234 457999988889999988775434 35666666543
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.03 Score=66.25 Aligned_cols=174 Identities=11% Similarity=0.172 Sum_probs=103.6
Q ss_pred EEEEeCCC-CChHHHH-hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--h----
Q 004554 125 TSVLQAPH-GDLVGCM-EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--L---- 196 (745)
Q Consensus 125 ~tfie~~~-~dl~~mL-D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~--~---- 196 (745)
++|+-+|- .++..|. -.++.||++|||+|++.| +...+++.++.++..|+| ++.|++.+|.. .
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHE 141 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhcc
Confidence 88888762 2344433 356899999999999944 778899999999999998 56677877741 0
Q ss_pred --------hhh-HHHHHHHHhh------------ccc-------ccCCCCeeEEeCCHH--HHHHHHHHHhhccc----c
Q 004554 197 --------KKR-KDLKKMCISS------------LTS-------EFPEDCKFYAADTKD--ELHKFLWLFKEQRL----T 242 (745)
Q Consensus 197 --------Kk~-~~~kK~lk~~------------f~~-------e~~~~~Klf~l~~~~--e~~nL~R~I~~~k~----r 242 (745)
.++ ..++..+..+ |.. ++.....++.+|..+ -+-.|+-.|..... .
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~ 221 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEE 221 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhh
Confidence 011 1233222211 111 234456788888422 33344444432221 2
Q ss_pred CCcccc-CCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCc
Q 004554 243 VPHWRN-QRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNA 313 (745)
Q Consensus 243 ~l~WR~-~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~~~DP~pl~~ 313 (745)
.|.... ...-+.+.++-... .. -.+++|-|....|++|..|=+-+.+-=...+|-.+-+|-|+..
T Consensus 222 ~l~~~~~~~~~~~V~e~~~~~-----G~-G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e 287 (590)
T TIGR00491 222 QLKLEEEGPARGTILEVKEET-----GL-GMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEE 287 (590)
T ss_pred hhccCCCCCeEEEEEEEEEcC-----CC-ceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCcccc
Confidence 333322 22234444444332 12 3567999988889998887776654333567888888877654
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.028 Score=66.72 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=112.8
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
..+|.|+-+|- .++ ..+..+++.||.+|||+|++.| ....+...|..+...|+|. +.|++.+|.....-
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip~-IVviNKiD~~~a~~ 137 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLKP-IVVINKVDRPGARP 137 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCCE-EEEEECcCCCCCch
Confidence 57899999872 344 3567788999999999999954 6668889999999999996 56899888521222
Q ss_pred HHHHHHHHhhcccc--cC--CCCeeEEeCCHH------------HHHHHHHHHhhccccCCccccCCCeEEEEeeEeccC
Q 004554 200 KDLKKMCISSLTSE--FP--EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD 263 (745)
Q Consensus 200 ~~~kK~lk~~f~~e--~~--~~~Klf~l~~~~------------e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~ 263 (745)
..+...++..|... .. .+.-+++.|..+ .+..|+-.|...-|.|....+.-.-|++.++.+.+-
T Consensus 138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~ 217 (607)
T PRK10218 138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSY 217 (607)
T ss_pred hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCC
Confidence 33445555555321 00 123367777422 356788888888887765444434677777766432
Q ss_pred CCCCCCceEEEEEEEeCCCCCCCCeEEeCCC-Cc---eeeceeec
Q 004554 264 DCNSGKCTLLLHGYLRAHCLSVNQLVHISGA-GD---FQLGKIEI 304 (745)
Q Consensus 264 ~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~-GD---Fqi~~I~~ 304 (745)
.|+| ++|-|-...|++|+.|.++.- |- ..|.+|..
T Consensus 218 -----~G~i-~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~ 256 (607)
T PRK10218 218 -----VGVI-GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLG 256 (607)
T ss_pred -----CcEE-EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEE
Confidence 3554 788887778999999999876 43 33445543
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0078 Score=60.35 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=73.5
Q ss_pred eeeEEEEeCCCC--C-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-
Q 004554 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK- 197 (745)
Q Consensus 122 k~R~tfie~~~~--d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K- 197 (745)
+.+++|+.+| + + +..++..++.||.|++|+|++.| ......+.+..++..|.| ++.|++..|...+
T Consensus 67 ~~~~~i~Dtp-G~~~~~~~~~~~~~~~d~vi~VvD~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~ 136 (192)
T cd01889 67 NLQITLVDCP-GHASLIRTIIGGAQIIDLMLLVVDATKG--------IQTQTAECLVIGEILCKK-LIVVLNKIDLIPEE 136 (192)
T ss_pred CceEEEEECC-CcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECcccCCHH
Confidence 4688999997 4 3 35666778899999999999854 445556666677777875 6678898885111
Q ss_pred hhHHHHHHHHhhccccc----CCCCeeEEeCCHH--HHHHHHHHHhhccccCC
Q 004554 198 KRKDLKKMCISSLTSEF----PEDCKFYAADTKD--ELHKFLWLFKEQRLTVP 244 (745)
Q Consensus 198 k~~~~kK~lk~~f~~e~----~~~~Klf~l~~~~--e~~nL~R~I~~~k~r~l 244 (745)
.+....+.+++.|...+ ..+..+|++|..+ -+..|.-.|..+-+-|+
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 137 ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 22233444444433222 2357899998533 36667777777666554
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.029 Score=67.07 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=107.5
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch--h
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL--K 197 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~--K 197 (745)
+++++|+-+|- .+ +..|+-.+..||++|||+|+..| +...+.+.+.++...|.|.++.|++.+|.-. +
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccchh
Confidence 56889998872 23 34688889999999999999854 6667888899999999999999999998510 1
Q ss_pred h-hHHHHHHHHhhcccccCCCCeeEEeCCHH--------------HHHHHHHHHhhccccCCccccCCCe-EEEEeeEec
Q 004554 198 K-RKDLKKMCISSLTSEFPEDCKFYAADTKD--------------ELHKFLWLFKEQRLTVPHWRNQRPF-LMAQKVDVV 261 (745)
Q Consensus 198 k-~~~~kK~lk~~f~~e~~~~~Klf~l~~~~--------------e~~nL~R~I~~~k~r~l~WR~~rpY-mLadr~e~~ 261 (745)
. ...+++.++.++...-.....++++|..+ +...|+-.|....+. -.+ ...|+ |-.+++.-.
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~~-~~~-~~~p~r~~i~~v~~~ 252 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEIA-SDR-NLKDFRFPVQYVNRP 252 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCCC-CCc-CCCCceeeEEEEEec
Confidence 1 12244444443322212345677877311 112355555544332 222 34444 445554311
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCCC
Q 004554 262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDPF 309 (745)
Q Consensus 262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~~DP~ 309 (745)
. ....-+.|.|....+++|+.|.|...| -..|.+|+.-..|+
T Consensus 253 -~-----~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~ 295 (632)
T PRK05506 253 -N-----LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDL 295 (632)
T ss_pred -C-----CCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCcee
Confidence 0 011226799998899999999886555 56777877655443
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.08 Score=62.89 Aligned_cols=166 Identities=7% Similarity=0.004 Sum_probs=108.8
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+..|+|+-+|- .|+ ..+....+.||.+|||+|++.| ....+.+.+..+...|+| ++.|++.+|......
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~ 139 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPSADP 139 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCH
Confidence 46788998862 333 3456678899999999999954 555676666666778998 777899888521222
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 004554 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (745)
..+.+.+...+.. . ...+|..|. ..-+..|+..|...-|.|...-+...-+++....+.+ ..-..++|-
T Consensus 140 ~~~~~el~~~lg~--~-~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~------~~G~v~~~r 210 (595)
T TIGR01393 140 ERVKKEIEEVIGL--D-ASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDN------YRGVVALVR 210 (595)
T ss_pred HHHHHHHHHHhCC--C-cceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeC------CCcEEEEEE
Confidence 3344455554431 1 234677774 3346677888877777776543333234444444432 234568888
Q ss_pred EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 004554 278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (745)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-DFqi~~I~~~ 305 (745)
|....|++|..|.+..-| -+.+.+|...
T Consensus 211 V~sG~lk~Gd~v~~~~~~~~~~v~~i~~~ 239 (595)
T TIGR01393 211 VFEGTIKPGDKIRFMSTGKEYEVDEVGVF 239 (595)
T ss_pred EECCEEecCCEEEEecCCCeeEEeEEEEe
Confidence 888889999999887766 5888888843
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=59.46 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+++.|+-+|- .++ ..++.+++.||.+|||+|++.| +...+.+.+..++..|.|.+|.|++.+|.
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 56888998872 233 4688889999999999999954 66677778888888999999999999985
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.019 Score=61.55 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=84.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-----------hHHHH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCM 139 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~~d-----------l~~mL 139 (745)
+|+|+|.++++.. +| ++.+.+..... ....+... -...+.|+.+| +- ...+.
T Consensus 7 ~V~iiG~pn~GKS-TL----in~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTP-G~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 7 FVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTP-GIHKPKRALNRAMNKAAW 79 (292)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECC-CCCCchhHHHHHHHHHHH
Confidence 6899999998775 56 44444333211 11111111 13578999987 31 12344
Q ss_pred hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 004554 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (745)
Q Consensus 140 D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~K 219 (745)
.++.-||++|+|+|++. .+.....+++..|+..+.| ++.|++..|. .+........++. +...++ ...
T Consensus 80 ~~~~~~D~il~vvd~~~--------~~~~~~~~i~~~l~~~~~p-vilVlNKiDl-~~~~~~l~~~~~~-l~~~~~-~~~ 147 (292)
T PRK00089 80 SSLKDVDLVLFVVDADE--------KIGPGDEFILEKLKKVKTP-VILVLNKIDL-VKDKEELLPLLEE-LSELMD-FAE 147 (292)
T ss_pred HHHhcCCEEEEEEeCCC--------CCChhHHHHHHHHhhcCCC-EEEEEECCcC-CCCHHHHHHHHHH-HHhhCC-CCe
Confidence 56778999999999984 3666678888888877777 5567898886 1122222222222 222222 467
Q ss_pred eEEeCC--HHHHHHHHHHHhhccc
Q 004554 220 FYAADT--KDELHKFLWLFKEQRL 241 (745)
Q Consensus 220 lf~l~~--~~e~~nL~R~I~~~k~ 241 (745)
+|.+|. ...+..|...|...-+
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCC
Confidence 888874 3446667777766554
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.093 Score=62.23 Aligned_cols=213 Identities=13% Similarity=0.125 Sum_probs=119.1
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceEEE-------ec------Cc----------eeeEEEEeCCC-
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSSTVS-------SS------KY----------RLRTSVLQAPH- 132 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---g~~tv~-------~~------r~----------k~R~tfie~~~- 132 (745)
-+|+|+|..+.+.. +| +..|++..... |-+|-. .. .. ...++|+-+|-
T Consensus 7 p~V~i~Gh~~~GKT-SL----l~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 7 PIVVVLGHVDHGKT-TL----LDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred cEEEEECCCCCCHH-HH----HHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 37999999987775 56 55554443321 322211 00 00 01378998873
Q ss_pred CChHHHHh-HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--hh------------
Q 004554 133 GDLVGCME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--LK------------ 197 (745)
Q Consensus 133 ~dl~~mLD-~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~--~K------------ 197 (745)
.++..+.. .++.||++|||+|++.| +...+++.++.++..|+| ++.|++.+|.. ..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHh
Confidence 34554443 56889999999999954 788999999999999999 66778877741 11
Q ss_pred hh-HHHHH-------HHHhhc-----cc-------ccCCCCeeEEeCC-----HHHHHHHHHHHhhc-cccCCcccc-CC
Q 004554 198 KR-KDLKK-------MCISSL-----TS-------EFPEDCKFYAADT-----KDELHKFLWLFKEQ-RLTVPHWRN-QR 250 (745)
Q Consensus 198 k~-~~~kK-------~lk~~f-----~~-------e~~~~~Klf~l~~-----~~e~~nL~R~I~~~-k~r~l~WR~-~r 250 (745)
++ ..++. .+..++ +. ++....-++.+|. -.+.+..+-.++.. -+.++.... ..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~ 232 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGP 232 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 00 11111 111222 12 2334566777773 33433333222221 123344322 22
Q ss_pred CeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCC
Q 004554 251 PFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLN 312 (745)
Q Consensus 251 pYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~~~DP~pl~ 312 (745)
..+.+..+.... ..| .+++|-|....|++|..|.+-+.+=-...+|..+.+|-|+.
T Consensus 233 ~~~~V~ev~~~~-----g~G-~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~ 288 (586)
T PRK04004 233 GKGTVLEVKEER-----GLG-TTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLD 288 (586)
T ss_pred eEEEEEEEEEeC-----CCc-eEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchh
Confidence 244444544332 234 46899998888999999987655321123555555555553
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.14 Score=60.93 Aligned_cols=166 Identities=7% Similarity=0.001 Sum_probs=109.5
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
...++|+-+|- .|+ ..+..+...||.+|||+|++.| .+..+.+.+..+...|+| ++.|++.+|......
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~~ 143 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLPAADP 143 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCcccH
Confidence 46788998872 343 3456678899999999999954 566777778778888999 778899988511222
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 004554 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (745)
..+.+.++..+.. + ...++..|. ..-+..|+..|...-|.|...-+...-+++-...+.+ ..-..++|-
T Consensus 144 ~~v~~ei~~~lg~--~-~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~------~~G~v~~~r 214 (600)
T PRK05433 144 ERVKQEIEDVIGI--D-ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDN------YRGVVVLVR 214 (600)
T ss_pred HHHHHHHHHHhCC--C-cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecC------CCceEEEEE
Confidence 2344445444321 1 234777774 3346677777777767665444443344444444332 233568899
Q ss_pred EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 004554 278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (745)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-DFqi~~I~~~ 305 (745)
|-...|++|..|.+..-| .+.+.+|...
T Consensus 215 V~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~ 243 (600)
T PRK05433 215 VVDGTLKKGDKIKMMSTGKEYEVDEVGVF 243 (600)
T ss_pred EEcCEEecCCEEEEecCCceEEEEEeecc
Confidence 988889999999876655 6888888743
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.034 Score=53.21 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=76.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc--CCCCC-----cceEEEecCceeeEEEEeCCCC--------Ch-----HHH
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGA-----LSSTVSSSKYRLRTSVLQAPHG--------DL-----VGC 138 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~--~~~~~-----g~~tv~~~r~k~R~tfie~~~~--------dl-----~~m 138 (745)
|.-|+++|.++.+.. +|++.|++.... .+... ....+... ..+++++.+|.- .+ ..+
T Consensus 2 ~~~i~i~G~~~~GKs-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKS-SLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHH-HHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 667899999987765 563332332100 00000 11223333 257889999721 11 234
Q ss_pred HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh---hhHHHHHHHHhhcccccC
Q 004554 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK---KRKDLKKMCISSLTSEFP 215 (745)
Q Consensus 139 LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~K---k~~~~kK~lk~~f~~e~~ 215 (745)
+.+..-||++|+++|++.+ .......++..+..+|.| ++.|+++.|.... ......+.+++.+...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 147 (174)
T cd01895 79 LKAIERADVVLLVIDATEG--------ITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL-- 147 (174)
T ss_pred HHHHhhcCeEEEEEeCCCC--------cchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcccc--
Confidence 4566789999999999853 334556777888878865 5568898885111 1233455555544322
Q ss_pred CCCeeEEeCC
Q 004554 216 EDCKFYAADT 225 (745)
Q Consensus 216 ~~~Klf~l~~ 225 (745)
....+|.+|.
T Consensus 148 ~~~~~~~~Sa 157 (174)
T cd01895 148 DYAPIVFISA 157 (174)
T ss_pred cCCceEEEec
Confidence 2477888884
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.022 Score=60.92 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=61.3
Q ss_pred eeeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 004554 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (745)
Q Consensus 122 k~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk 198 (745)
+.++.|+-+| .- ...+.-+.+.||.+|||+||+.| +...+..+++.++..|+|.+ .+++.+|.....
T Consensus 63 ~~~i~liDTP-G~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~ 132 (270)
T cd01886 63 DHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD 132 (270)
T ss_pred CEEEEEEECC-CcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC
Confidence 4688999998 43 35677789999999999999954 67788999999999999975 589998852123
Q ss_pred hHHHHHHHHhhccc
Q 004554 199 RKDLKKMCISSLTS 212 (745)
Q Consensus 199 ~~~~kK~lk~~f~~ 212 (745)
...+...++.++..
T Consensus 133 ~~~~~~~l~~~l~~ 146 (270)
T cd01886 133 FFRVVEQIREKLGA 146 (270)
T ss_pred HHHHHHHHHHHhCC
Confidence 33455666666644
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.043 Score=62.32 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=85.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc----eEEEecCceeeEEEEeCCCCC-------------
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS----STVSSSKYRLRTSVLQAPHGD------------- 134 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g~----~tv~~~r~k~R~tfie~~~~d------------- 134 (745)
..+.-|+|+|.++.+.. +| +..+...+. .. |. +........++++++.++ +-
T Consensus 171 ~~~~~v~ivG~~n~GKS-tl----in~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~-G~~~~~~~~~~~e~~ 244 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKS-SL----INALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTA-GIRRKGKVTEGVEKY 244 (435)
T ss_pred ccceEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECC-CCCCCcchhhHHHHH
Confidence 45788999999988775 66 444443321 11 11 111121224678999987 41
Q ss_pred -hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhhHHHHHHHHhhccc
Q 004554 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKRKDLKKMCISSLTS 212 (745)
Q Consensus 135 -l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~-~Kk~~~~kK~lk~~f~~ 212 (745)
...++.+...||++|+|+|++.| +......++..+..+|.| ++.|++..|.. .......++.+...+.
T Consensus 245 ~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~~~~~~~~~~~~~l~- 314 (435)
T PRK00093 245 SVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEKTMEEFKKELRRRLP- 314 (435)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCCCHHHHHHHHHHHHHhcc-
Confidence 13456788899999999999954 667778899999999988 55578877751 1223445555655543
Q ss_pred ccCCCCeeEEeCC
Q 004554 213 EFPEDCKFYAADT 225 (745)
Q Consensus 213 e~~~~~Klf~l~~ 225 (745)
+++ .+.++.+|.
T Consensus 315 ~~~-~~~i~~~SA 326 (435)
T PRK00093 315 FLD-YAPIVFISA 326 (435)
T ss_pred ccc-CCCEEEEeC
Confidence 222 577888884
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.026 Score=59.95 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=58.0
Q ss_pred eeEEEEeCCCCCh---HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 123 LRTSVLQAPHGDL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 123 ~R~tfie~~~~dl---~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
.+++++-|| ... ..+..++..||.+|+++|++.| ....+..+++.+...|+|.++ |++.+|......
T Consensus 64 ~~i~liDtP-G~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~~~~ 133 (268)
T cd04170 64 HKINLIDTP-GYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIPRII-FINKMDRERADF 133 (268)
T ss_pred EEEEEEECc-CHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEEE-EEECCccCCCCH
Confidence 588999998 432 5588899999999999999954 666788899999999999776 889998621222
Q ss_pred HHHHHHHHhhc
Q 004554 200 KDLKKMCISSL 210 (745)
Q Consensus 200 ~~~kK~lk~~f 210 (745)
..+...++..|
T Consensus 134 ~~~~~~l~~~~ 144 (268)
T cd04170 134 DKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHHh
Confidence 33445555444
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.026 Score=60.26 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=51.6
Q ss_pred eeeEEEEeCCC-CChHH-HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~dl~~-mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+.++.|+-+|- .++.. +..+.+.||.+|+|+|++.| ++.++..+++.++..|+| ++.+++.+|.
T Consensus 70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~ 135 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDR 135 (267)
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCcc
Confidence 57899998872 23333 67788999999999999854 677888999999999999 6668898885
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.047 Score=61.41 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=111.5
Q ss_pred eeEEEEeCCC--CChHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 004554 123 LRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR 199 (745)
Q Consensus 123 ~R~tfie~~~--~dl~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~ 199 (745)
.+++||.+|. .=+.+||+.+-..|..||+|++. ++...+|-|.|-+|..-|+++-+.||+..|. +..+.
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~d--------eGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~ 121 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAAD--------EGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARI 121 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCc--------cCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHH
Confidence 4899999974 44999999999999999999998 4589999999999999999999999999885 32333
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC-----HHHHHHHHHHHhhccccCCccccCCCeEE-EEeeEeccCCCCCCCceEE
Q 004554 200 KDLKKMCISSLTSEFPEDCKFYAADT-----KDELHKFLWLFKEQRLTVPHWRNQRPFLM-AQKVDVVADDCNSGKCTLL 273 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~~~Klf~l~~-----~~e~~nL~R~I~~~k~r~l~WR~~rpYmL-adr~e~~~~~~~~~~~~l~ 273 (745)
....+.+..... + ..+++|..|. -.|..|=+=.+.. ...=-.+.|+-+ .||+=-+. ..| .+
T Consensus 122 e~~i~~Il~~l~--l-~~~~i~~~s~~~g~GI~~Lk~~l~~L~~----~~e~d~~~~fri~IDraFtVK-----GvG-TV 188 (447)
T COG3276 122 EQKIKQILADLS--L-ANAKIFKTSAKTGRGIEELKNELIDLLE----EIERDEQKPFRIAIDRAFTVK-----GVG-TV 188 (447)
T ss_pred HHHHHHHHhhcc--c-ccccccccccccCCCHHHHHHHHHHhhh----hhhhccCCceEEEEeeEEEec-----ccc-EE
Confidence 334444444444 3 4788888772 2222222222222 111123445555 56643222 234 56
Q ss_pred EEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 004554 274 LHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (745)
Q Consensus 274 v~GyvRG~~l~~n~lVHIpG~G-DFqi~~I~~~~ 306 (745)
|+|++--....+|.-+-+-++| .-+|.+|..-.
T Consensus 189 VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d 222 (447)
T COG3276 189 VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHD 222 (447)
T ss_pred EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecC
Confidence 7787765556788888888888 67788887654
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.033 Score=57.37 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=67.5
Q ss_pred eeeEEEEeCCCCC---hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc---
Q 004554 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--- 195 (745)
Q Consensus 122 k~R~tfie~~~~d---l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~--- 195 (745)
..+++|+.+| .. +..++.+++.||.+|||+|++.+..+ ...+...++.+.+..++..|.|.++.|++.+|..
T Consensus 76 ~~~i~liDtp-G~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 76 KYRFTILDAP-GHRDFVPNMITGASQADVAVLVVDARKGEFE-AGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred CeEEEEEECC-ChHHHHHHHHHHhhhCCEEEEEEECCCCccc-cccccccchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 5789999998 42 45678888999999999999964100 0002344677777888888999999999988851
Q ss_pred --hhhhHHHHHHHHhhcccccC--CCCeeEEeCC
Q 004554 196 --LKKRKDLKKMCISSLTSEFP--EDCKFYAADT 225 (745)
Q Consensus 196 --~Kk~~~~kK~lk~~f~~e~~--~~~Klf~l~~ 225 (745)
......+.+.++.++...-. ....++.+|.
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA 187 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISG 187 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence 01123455555555544211 2466888774
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.041 Score=57.70 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=60.1
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+.+++|+.+|- .+ ...+..+.+.||.++||+|++.| +..++.++++.++.+|+|.+ .|++.+|......
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~~ 133 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIPTI-IFVNKIDRAGADL 133 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECccccCCCH
Confidence 57899999872 23 44577788999999999999954 66788999999999999965 5889888521123
Q ss_pred HHHHHHHHhhcc
Q 004554 200 KDLKKMCISSLT 211 (745)
Q Consensus 200 ~~~kK~lk~~f~ 211 (745)
.++...++..|.
T Consensus 134 ~~~~~~i~~~~~ 145 (237)
T cd04168 134 EKVYQEIKEKLS 145 (237)
T ss_pred HHHHHHHHHHHC
Confidence 445556665553
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=52.33 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=66.7
Q ss_pred eeeEEEEeCCC-CChHH-HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl~~-mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+.+++|+.+|- .++.+ +.-.++-||.+|+|+|++.+ .......+|..+..+|+| ++.|++.+|......
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~ 134 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPDARP 134 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH
Confidence 57899999973 23444 34457899999999999853 334456667777788999 566899888511222
Q ss_pred HHHHHHHHhhccc---cc-CCCCeeEEeCC------------HHHHHHHHHHHhhccc
Q 004554 200 KDLKKMCISSLTS---EF-PEDCKFYAADT------------KDELHKFLWLFKEQRL 241 (745)
Q Consensus 200 ~~~kK~lk~~f~~---e~-~~~~Klf~l~~------------~~e~~nL~R~I~~~k~ 241 (745)
..+...++.++.. .. .-+..++..|. ...+..|+-.|.+.-|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 2333444444321 10 01456777663 3445556555554433
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.05 Score=53.89 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=76.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCC-CC---C-cceEEEec--CceeeEEEEeCCCC-----------ChHHH
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-TG---A-LSSTVSSS--KYRLRTSVLQAPHG-----------DLVGC 138 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-~~---~-g~~tv~~~--r~k~R~tfie~~~~-----------dl~~m 138 (745)
..| -|+|+|.++.+.. +| ++.++... .. . ...|..+. .....+.|+-.|-- ++..+
T Consensus 17 ~~~-~i~ivG~~~~GKS-tl----in~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 17 DGP-EIAFAGRSNVGKS-SL----INALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCC-EEEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHH
Confidence 344 4589999988775 66 55554432 11 1 11221111 01246888887721 12222
Q ss_pred H----hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccc
Q 004554 139 M----EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSE 213 (745)
Q Consensus 139 L----D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~~kK~lk~~f~~e 213 (745)
+ ..+..+|.+|+++|++.+ +.....++++.|...|+| ++.|++++|. +..........++..+...
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 2 223357899999999843 666677888999999998 7788998885 1111222333444444433
Q ss_pred cCCCCeeEEeCC
Q 004554 214 FPEDCKFYAADT 225 (745)
Q Consensus 214 ~~~~~Klf~l~~ 225 (745)
. ...++|..|.
T Consensus 162 ~-~~~~v~~~Sa 172 (179)
T TIGR03598 162 A-DDPSVQLFSS 172 (179)
T ss_pred c-CCCceEEEEC
Confidence 2 2357777764
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.069 Score=59.03 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=83.9
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceE--EEecCceeeEEEEeCCCCC------hH-HHH-
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSST--VSSSKYRLRTSVLQAPHGD------LV-GCM- 139 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~---~------g~~t--v~~~r~k~R~tfie~~~~d------l~-~mL- 139 (745)
..-|+|+|.++.+.. +| ++.|...... . +.++ +..+ ...+.|+.+| +- +. .|.
T Consensus 52 ~~kV~ivG~~nvGKS-TL----in~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTp-G~~~~~~~l~~~~~r 123 (339)
T PRK15494 52 TVSVCIIGRPNSGKS-TL----LNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTP-GIFEPKGSLEKAMVR 123 (339)
T ss_pred eeEEEEEcCCCCCHH-HH----HHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECC-CcCCCcccHHHHHHH
Confidence 346899999987765 56 4444332221 0 1121 2222 3578999887 32 22 232
Q ss_pred ---hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 004554 140 ---EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE 216 (745)
Q Consensus 140 ---D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~ 216 (745)
.+++-||+||||+|++. .|+.....+++.++..+.|.+ .|++.+|...+...+..+.++. ..+
T Consensus 124 ~~~~~l~~aDvil~VvD~~~--------s~~~~~~~il~~l~~~~~p~I-lViNKiDl~~~~~~~~~~~l~~----~~~- 189 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLK--------SFDDITHNILDKLRSLNIVPI-FLLNKIDIESKYLNDIKAFLTE----NHP- 189 (339)
T ss_pred HHHHHhhhCCEEEEEEECCC--------CCCHHHHHHHHHHHhcCCCEE-EEEEhhcCccccHHHHHHHHHh----cCC-
Confidence 34678999999999884 377766788999988898875 4789888511222233333332 222
Q ss_pred CCeeEEeCC--HHHHHHHHHHHhhccc
Q 004554 217 DCKFYAADT--KDELHKFLWLFKEQRL 241 (745)
Q Consensus 217 ~~Klf~l~~--~~e~~nL~R~I~~~k~ 241 (745)
...+|.+|. ...+..|...|...-+
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 457788774 3445566666655443
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.15 Score=55.72 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=105.0
Q ss_pred EEEeCCC--CChHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHH
Q 004554 126 SVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKD 201 (745)
Q Consensus 126 tfie~~~--~dl~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~--~~Kk~~~ 201 (745)
||+.||- .=|..+|-.|.|-|+.+|+||+.-| ..-.+-|+|-+-+. =-|+.+.|++.+|. +++++.+
T Consensus 73 tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG--------~QtQtAEcLiig~~-~c~klvvvinkid~lpE~qr~sk 143 (522)
T KOG0461|consen 73 TLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG--------KQTQTAECLIIGEL-LCKKLVVVINKIDVLPENQRASK 143 (522)
T ss_pred EEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc--------cccccchhhhhhhh-hccceEEEEeccccccchhhhhH
Confidence 9999983 2278899999999999999999965 56678888855322 24677777777662 3344333
Q ss_pred ---HHHHHHhhccc-ccCCCCeeEEeCC------HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCce
Q 004554 202 ---LKKMCISSLTS-EFPEDCKFYAADT------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCT 271 (745)
Q Consensus 202 ---~kK~lk~~f~~-e~~~~~Klf~l~~------~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~ 271 (745)
..|++++-+++ -|...+-+..++. ++-+.+|.-.|-++-+.|-+= ..-|++++=.+-|-- +.-||
T Consensus 144 i~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd-~~gpflm~vDHCF~I----KGQGT 218 (522)
T KOG0461|consen 144 IEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD-EEGPFLMAVDHCFAI----KGQGT 218 (522)
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC-CCCCeEEEeeeeEEe----ccCce
Confidence 45556666654 4554577777662 455667766666666665443 345666665544321 12344
Q ss_pred EEEEEEE-eCCCCCCCCeEEeCCCCce-eeceeec
Q 004554 272 LLLHGYL-RAHCLSVNQLVHISGAGDF-QLGKIEI 304 (745)
Q Consensus 272 l~v~Gyv-RG~~l~~n~lVHIpG~GDF-qi~~I~~ 304 (745)
+++|.| ||. ++.|.-|-+|-+|.- .+++++.
T Consensus 219 -V~TGTvl~G~-~~ln~~iE~PAL~e~rkVKslqm 251 (522)
T KOG0461|consen 219 -VLTGTVLRGV-LRLNTEIEFPALNEKRKVKSLQM 251 (522)
T ss_pred -EEeeeEEEeE-EecCcEEeecccchhhhhhhHHH
Confidence 456654 554 899999999998842 2444443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.086 Score=59.67 Aligned_cols=132 Identities=15% Similarity=0.153 Sum_probs=82.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceEEEecCceeeEEEEeCCCCC---------h---
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSSTVSSSKYRLRTSVLQAPHGD---------L--- 135 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~------g~~tv~~~r~k~R~tfie~~~~d---------l--- 135 (745)
..+.-|+|+|.++.+.. +| +..+...+. .. .++........++++++..+ +- +
T Consensus 170 ~~~~~v~ivG~~~~GKS-sL----in~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~-G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKS-TL----VNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTA-GIRRKGKVTEGVEKY 243 (429)
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECC-CccccccchhhHHHH
Confidence 34567899999887765 66 444433221 11 11112211123578899887 41 1
Q ss_pred --HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcc
Q 004554 136 --VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLT 211 (745)
Q Consensus 136 --~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~--~~Kk~~~~kK~lk~~f~ 211 (745)
...+.+++-||++|+|+|++.| +.....+++..+..+|.| +|.|++..|. +.......++.+...+.
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP 314 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence 2346678899999999999954 667778899999999987 5557887775 11223345555555543
Q ss_pred cccCCCCeeEEeCC
Q 004554 212 SEFPEDCKFYAADT 225 (745)
Q Consensus 212 ~e~~~~~Klf~l~~ 225 (745)
.. .+..++.+|.
T Consensus 315 ~~--~~~~vi~~SA 326 (429)
T TIGR03594 315 FL--DFAPIVFISA 326 (429)
T ss_pred cC--CCCceEEEeC
Confidence 22 2577888874
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.085 Score=56.21 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=77.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC---------cce-EEEecCceeeEEEEeCCCC-----ChH-----HHHh
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSS-TVSSSKYRLRTSVLQAPHG-----DLV-----GCME 140 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~-tv~~~r~k~R~tfie~~~~-----dl~-----~mLD 140 (745)
.|+|+|.++.+.. +| +..+++..... ..+ .+.... ...+.|+..|-- .+. .+..
T Consensus 2 ~V~liG~pnvGKS-TL----ln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKS-TL----LNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHH
Confidence 4889999987765 66 44444333211 111 111121 245889988721 122 2345
Q ss_pred HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Kl 220 (745)
+++-||+||+|+|++.+ ...+ ..+++.|+..+.| ++.|++..|. .........+..+... . ...++
T Consensus 76 ~l~~aDvvl~VvD~~~~--------~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl--~~~~~~~~~~~~~~~~-~-~~~~v 141 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQW--------NGDG-EFVLTKLQNLKRP-VVLTRNKLDN--KFKDKLLPLIDKYAIL-E-DFKDI 141 (270)
T ss_pred HHhhCCEEEEEEECCCC--------CchH-HHHHHHHHhcCCC-EEEEEECeeC--CCHHHHHHHHHHHHhh-c-CCCce
Confidence 67889999999999853 1122 6778888888887 5678888886 2222222222222111 1 13478
Q ss_pred EEeCC--HHHHHHHHHHHhhc
Q 004554 221 YAADT--KDELHKFLWLFKEQ 239 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~~~ 239 (745)
|.+|. ..-+..|...|...
T Consensus 142 ~~iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 142 VPISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 88883 33344555555443
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.22 Score=62.36 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=110.3
Q ss_pred eEEEEeCCC-CChHHH-HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--ch---
Q 004554 124 RTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DL--- 196 (745)
Q Consensus 124 R~tfie~~~-~dl~~m-LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~--~~--- 196 (745)
.++|+-+|- .++.++ .-.+..||++|||+|++. ++...+++.+..++..|.| +|.|++.+|. ..
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~--------Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~ 597 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE--------GFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNIS 597 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc--------cCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccc
Confidence 389998872 223333 234577999999999994 4888999999999999998 6667777663 10
Q ss_pred ---------hhh-HHHHHHHHhhc------------c-------cccCCCCeeEEeCCHH--HHHHHHHHHhhccc----
Q 004554 197 ---------KKR-KDLKKMCISSL------------T-------SEFPEDCKFYAADTKD--ELHKFLWLFKEQRL---- 241 (745)
Q Consensus 197 ---------Kk~-~~~kK~lk~~f------------~-------~e~~~~~Klf~l~~~~--e~~nL~R~I~~~k~---- 241 (745)
+++ ..++..+..++ . .+|....-++.+|..+ -+-.|+-.|.....
T Consensus 598 ~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~ 677 (1049)
T PRK14845 598 EDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE 677 (1049)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh
Confidence 111 12333322111 1 1344566778888422 23444445543332
Q ss_pred cCCccccCCC-eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCccc
Q 004554 242 TVPHWRNQRP-FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARK 315 (745)
Q Consensus 242 r~l~WR~~rp-YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~~~DP~pl~~~~ 315 (745)
..+......| -+.++++.... ..-.+++|-|....|++|..|-+-+.+.=...+|-++-+|-|+..-.
T Consensus 678 ~~L~~~~~~~~~g~VlEv~~~k------G~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r 746 (1049)
T PRK14845 678 ERLKLNVEGYAKGTILEVKEEK------GLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIR 746 (1049)
T ss_pred hhhccCCCCceEEEEEEEEEec------CceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccc
Confidence 2343322221 13333433322 23478899998888999999999887776788999999998876543
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.19 Score=47.35 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=78.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCCh-----------HHH
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGDL-----------VGC 138 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~R~tfie~~~~dl-----------~~m 138 (745)
...|+++|+++++.. +| +..+.+..... ..........+.++.++.+| .-. ...
T Consensus 3 ~~~i~~~G~~g~GKt-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~ 76 (168)
T cd04163 3 SGFVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTP-GIHKPKKKLGERMVKAA 76 (168)
T ss_pred eeEEEEECCCCCCHH-HH----HHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECC-CCCcchHHHHHHHHHHH
Confidence 457999999998876 56 44443332211 11111112224678899886 311 123
Q ss_pred HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCC
Q 004554 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDC 218 (745)
Q Consensus 139 LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~ 218 (745)
...+.-+|++++++|++. .+......++..++..+.|- +.|+++.|.. ...... ..+...+...++ ..
T Consensus 77 ~~~~~~~d~i~~v~d~~~--------~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~-~~~~~~-~~~~~~~~~~~~-~~ 144 (168)
T cd04163 77 WSALKDVDLVLFVVDASE--------PIGEGDEFILELLKKSKTPV-ILVLNKIDLV-KDKEDL-LPLLEKLKELGP-FA 144 (168)
T ss_pred HHHHHhCCEEEEEEECCC--------ccCchHHHHHHHHHHhCCCE-EEEEEchhcc-ccHHHH-HHHHHHHHhccC-CC
Confidence 445778999999999984 24555667778888778774 5667887751 112222 222233333333 35
Q ss_pred eeEEeCC--HHHHHHHHHHH
Q 004554 219 KFYAADT--KDELHKFLWLF 236 (745)
Q Consensus 219 Klf~l~~--~~e~~nL~R~I 236 (745)
.++.++. ...+..|...|
T Consensus 145 ~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 145 EIFPISALKGENVDELLEEI 164 (168)
T ss_pred ceEEEEeccCCChHHHHHHH
Confidence 6776663 33344444444
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.15 Score=47.75 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=76.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCC-ChHH-HHhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~~-dl~~-mLD~aKvADlVl 149 (745)
|+++|+++++.. +| +..+....... ...++........++++.+|.. .+.+ ...+++-+|.+|
T Consensus 3 i~~~G~~~~GKS-tl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii 77 (159)
T cd00154 3 IVLIGDSGVGKT-SL----LLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI 77 (159)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence 789999998876 67 44443322111 3344444444577888888731 2222 345567799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCCH-
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTK- 226 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qG--lP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~~- 226 (745)
+++|++.. ..++.-. .+++.+..++ -+.++.|+++.|.. .......+.++..... .+..++.+|..
T Consensus 78 ~v~d~~~~------~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~---~~~~~~~~sa~~ 146 (159)
T cd00154 78 LVYDITNR------ESFENLD-KWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKE---NGLLFFETSAKT 146 (159)
T ss_pred EEEECCCH------HHHHHHH-HHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHH---cCCeEEEEecCC
Confidence 99999842 2344333 3666666655 34456778888861 1111122223332222 24567777742
Q ss_pred -HHHHHHHHHH
Q 004554 227 -DELHKFLWLF 236 (745)
Q Consensus 227 -~e~~nL~R~I 236 (745)
..+..+...|
T Consensus 147 ~~~i~~~~~~i 157 (159)
T cd00154 147 GENVEELFQSL 157 (159)
T ss_pred CCCHHHHHHHH
Confidence 2344444443
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.22 Score=48.54 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=62.2
Q ss_pred eeeEEEEeCCC-CChHHH-HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl~~m-LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+..++|+-+|- .++..+ ...++-||.+|+|+|++.+ ...+..+.+..+...|+| ++.|++.+|......
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~ 136 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG--------VEAQTLANFYLALENNLE-IIPVINKIDLPSADP 136 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC--------ccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH
Confidence 55678888762 234433 4467889999999999853 334455555566678888 677899988511222
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 004554 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQ 239 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~ 239 (745)
....+.+.+.+. ++ ...+|.+|. ..-+..|...|+..
T Consensus 137 ~~~~~~~~~~~~--~~-~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 137 ERVKQQIEDVLG--LD-PSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHHHHHHHhC--CC-cccEEEeeccCCCCHHHHHHHHHhh
Confidence 223344444332 11 235777773 23344555555543
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.17 Score=48.72 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=73.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccC-CC-------CC--cceEEEecCceeeEEEEeCCC-CChHHH-HhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSE-GT-------GA--LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~-~~-------~~--g~~tv~~~r~k~R~tfie~~~-~dl~~m-LD~aKvADlVl 149 (745)
|+|+|+++.+.. +|++.|...+... .. +. ...++..+ +.+++++.++- .++.++ ....+-||.++
T Consensus 2 i~~vG~~~~GKs-tLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 2 VLILGLDNAGKT-TFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred EEEEecCCCCHH-HHHHHHhhhcccccCCcccccCCccccceEEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 688999987765 5644434332210 00 00 12233333 46888898872 234443 34478899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT 225 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~---~qGlP~vigvl~~L~~~~K-k~~~~kK~lk~~f~~e~~~~~Klf~l~~ 225 (745)
||+|++.. ..++..-..+..+++ .+|+| ++.|++..|.... ......+.++.+....-..+.+++.+|.
T Consensus 79 ~vvd~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 79 YVIDSTDR------ERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred EEEECchH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 99999842 224433333333333 46888 6667888874111 1233444444443322223567888884
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.14 Score=58.86 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=93.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecC-ceeeEEEEeCCCCChHHHHh--HHhh
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSK-YRLRTSVLQAPHGDLVGCME--MAKV 144 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r-~k~R~tfie~~~~dl~~mLD--~aKv 144 (745)
-|-||+|+|==..+.. +| +..+.+.+... |-+++..+. .-..||||--|.---.+.|- -|++
T Consensus 4 R~PvVtimGHVDHGKT-tL----LD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v 78 (509)
T COG0532 4 RPPVVTIMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV 78 (509)
T ss_pred CCCEEEEeCcccCCcc-ch----hhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence 3668899986443332 34 44454444332 444454431 13689999887433333333 3799
Q ss_pred cceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh-HHHHHHHHh-hcccccC-CCCeeE
Q 004554 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR-KDLKKMCIS-SLTSEFP-EDCKFY 221 (745)
Q Consensus 145 ADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~-~~~kK~lk~-~f~~e~~-~~~Klf 221 (745)
+|+|+|++++.. ++-..|.|-++.+++.|.|-++.+ +.+|. ...+ -+++..|+. =|..|-+ ....+.
T Consensus 79 tDIaILVVa~dD--------Gv~pQTiEAI~hak~a~vP~iVAi-NKiDk-~~~np~~v~~el~~~gl~~E~~gg~v~~V 148 (509)
T COG0532 79 TDIAILVVAADD--------GVMPQTIEAINHAKAAGVPIVVAI-NKIDK-PEANPDKVKQELQEYGLVPEEWGGDVIFV 148 (509)
T ss_pred ccEEEEEEEccC--------CcchhHHHHHHHHHHCCCCEEEEE-ecccC-CCCCHHHHHHHHHHcCCCHhhcCCceEEE
Confidence 999999999994 589999999999999999988876 44432 0111 123333332 3444433 346666
Q ss_pred EeC-----CHHHHHHHHHHHhhcc
Q 004554 222 AAD-----TKDELHKFLWLFKEQR 240 (745)
Q Consensus 222 ~l~-----~~~e~~nL~R~I~~~k 240 (745)
..| +-.|.+.+++.++.+-
T Consensus 149 pvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 149 PVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EeeccCCCCHHHHHHHHHHHHHHH
Confidence 777 5888998888888766
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.44 Score=46.44 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=68.2
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch-hh
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL-KK 198 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~-Kk 198 (745)
+.+++|+.+|- .++ .....+.+-||.+++|+|++.+ ...+..+++..+...+.| ++.|++..|.-. -.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~ 131 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVGEED 131 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhc
Confidence 46899999872 123 3355667889999999999853 556677788888877766 666778777511 11
Q ss_pred hHHHHHHHHhhcccc-----------cCCCCeeEEeCC--HHHHHHHHHHHhhcc
Q 004554 199 RKDLKKMCISSLTSE-----------FPEDCKFYAADT--KDELHKFLWLFKEQR 240 (745)
Q Consensus 199 ~~~~kK~lk~~f~~e-----------~~~~~Klf~l~~--~~e~~nL~R~I~~~k 240 (745)
.....+.++..+... .+....+|.+|. ...+..|...|+..-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 222333344443321 233677888885 234566666666543
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.38 Score=47.72 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=70.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC-CCC----cceEE--EecCceeeEEEEeCCCCC------------h----H
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-TGA----LSSTV--SSSKYRLRTSVLQAPHGD------------L----V 136 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-~~~----g~~tv--~~~r~k~R~tfie~~~~d------------l----~ 136 (745)
.-|+|+|.++.+.. +| ++.++... ... ...|. ........++|+..| +- . .
T Consensus 25 ~~v~ivG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~Dtp-G~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 25 PEIAFAGRSNVGKS-SL----INALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLP-GYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CEEEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCC-CCCCcCCCchHHHHHHHHHH
Confidence 44889999987765 66 44444332 111 11111 111123578888887 41 1 1
Q ss_pred HHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccC
Q 004554 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFP 215 (745)
Q Consensus 137 ~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~~kK~lk~~f~~e~~ 215 (745)
..+..+..++++++++|++.+ +.....+++..+...|+| ++.|++..|. +...+......++.++...
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-- 167 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKKQLKKVRKALKFG-- 167 (196)
T ss_pred HHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHHHHHHHHHHHHhc--
Confidence 223334455789999998843 444445677777888988 6667787774 1122233444455555443
Q ss_pred CCCeeEEeC
Q 004554 216 EDCKFYAAD 224 (745)
Q Consensus 216 ~~~Klf~l~ 224 (745)
..++|..|
T Consensus 168 -~~~~~~~S 175 (196)
T PRK00454 168 -DDEVILFS 175 (196)
T ss_pred -CCceEEEE
Confidence 35677766
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.17 Score=61.26 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=59.8
Q ss_pred eeeEEEEeCCCC---ChHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 004554 122 RLRTSVLQAPHG---DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (745)
Q Consensus 122 k~R~tfie~~~~---dl~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk 198 (745)
++.++|+-+| + -+..+..+...||.+|||+||+.| ++..+..+++.+..+|+|.+ .+++.+|.....
T Consensus 72 ~~~i~liDTP-G~~~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~ 141 (691)
T PRK12739 72 GHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD 141 (691)
T ss_pred CEEEEEEcCC-CHHHHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC
Confidence 4689999987 4 256788899999999999999954 77889999999999999975 678888851122
Q ss_pred hHHHHHHHHhhc
Q 004554 199 RKDLKKMCISSL 210 (745)
Q Consensus 199 ~~~~kK~lk~~f 210 (745)
...+.+.++..|
T Consensus 142 ~~~~~~~i~~~l 153 (691)
T PRK12739 142 FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHHHh
Confidence 334455555544
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.39 Score=44.42 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=60.2
Q ss_pred eeEEEEeCCCC------Ch---HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 004554 123 LRTSVLQAPHG------DL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (745)
Q Consensus 123 ~R~tfie~~~~------dl---~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~ 193 (745)
.+++|+.+|.- .. ..+..++..+|++++++|++.+ .......++..+...+.| ++.|+++.|
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~--------~~~~~~~~~~~~~~~~~~-~ivv~nK~D 115 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR--------ADEEEEKLLELLRERGKP-VLLVLNKID 115 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCe-EEEEEEccc
Confidence 47888888731 11 4566788999999999999953 333333356666667777 567899988
Q ss_pred cchhhhHHHHHHH-HhhcccccCCCCeeEEeCCHH--HHHHHHHHH
Q 004554 194 TDLKKRKDLKKMC-ISSLTSEFPEDCKFYAADTKD--ELHKFLWLF 236 (745)
Q Consensus 194 ~~~Kk~~~~kK~l-k~~f~~e~~~~~Klf~l~~~~--e~~nL~R~I 236 (745)
. .......... ..........+..+|..+..+ .+..|...|
T Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 116 L--LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred c--CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 5 1111111111 122222333477888887422 344444444
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.18 Score=60.97 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=60.8
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+++++||-+|- .| +..+..+...||.+|||+||..| +...+.+++..+..+|+|.+ .+++.+|......
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~~ 144 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVPRI-AFVNKMDRTGADF 144 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCCEE-EEEECCCCCCCCH
Confidence 57899999872 12 45688899999999999999954 78899999999999999975 6788888411223
Q ss_pred HHHHHHHHhhccc
Q 004554 200 KDLKKMCISSLTS 212 (745)
Q Consensus 200 ~~~kK~lk~~f~~ 212 (745)
..+...++..|..
T Consensus 145 ~~~~~~i~~~l~~ 157 (693)
T PRK00007 145 YRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHHhCC
Confidence 3455555555443
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.55 Score=54.62 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=120.6
Q ss_pred ceeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc-
Q 004554 121 YRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT- 194 (745)
Q Consensus 121 ~k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g-~~~~~~~~fd--~eg~e~L~~l~~qGlP~vigvl~~L~~- 194 (745)
.+.++|++-.|- .| +-.||--|--||..+|++||+.| +| -+|| ..|.|.+..|++.|+..+|.+++.+|.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE----~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFE----SGFDPGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhh----hccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 357999999874 46 56799999999999999999986 22 3555 578999999999999999999999984
Q ss_pred c-hhhhH-HHHHHHHhhccc---ccCCCCeeEEeCC-----------HHHH------HHHHHHHhhccccCCccccCCCe
Q 004554 195 D-LKKRK-DLKKMCISSLTS---EFPEDCKFYAADT-----------KDEL------HKFLWLFKEQRLTVPHWRNQRPF 252 (745)
Q Consensus 195 ~-~Kk~~-~~kK~lk~~f~~---e~~~~~Klf~l~~-----------~~e~------~nL~R~I~~~k~r~l~WR~~rpY 252 (745)
+ .+.|- .++..|+.++.. |+-..-++..+|+ .++. -+|+-.|=..++-.=. -..|.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~--~~kPl 406 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERP--IDKPL 406 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCc--ccCCe
Confidence 2 14443 478888888822 2223336666663 2122 2455566553331111 22355
Q ss_pred EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccCCCCC
Q 004554 253 LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILKDPFP 310 (745)
Q Consensus 253 mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDFqi~~I~~~~DP~p 310 (745)
.+.=.- +.+. ... .++|+|=|--..+-.|+.|.| |+.=|++|..|+.=..||-
T Consensus 407 ~ltIsd-i~~~---~~~-~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~ 460 (603)
T KOG0458|consen 407 RLTISD-IYPL---PSS-GVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKT 460 (603)
T ss_pred EEEhhh-eeec---CCC-eeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcce
Confidence 543221 1111 112 289999999888889998876 7888999999987655543
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.38 Score=52.39 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=111.3
Q ss_pred CceeeEEEEeCCCCC--hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch
Q 004554 120 KYRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL 196 (745)
Q Consensus 120 r~k~R~tfie~~~~d--l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~ 196 (745)
.+-||++|+.||--+ |..||--|-+-|=+||||.|+. .+=..+|.|=|-+|.--|+-+++-|=+.+|. .-
T Consensus 83 ~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANE-------pcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 83 ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE-------PCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCC-------CCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 567999999998433 6779999999999999999994 3346799999999999999999999888884 21
Q ss_pred hhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeE
Q 004554 197 KKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD 259 (745)
Q Consensus 197 Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e 259 (745)
.+..+.-+.+|.+++--...++.+..+|. ...|--|+-+|...-|.|.+==+..|-|++-|-=
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSF 220 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSF 220 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeec
Confidence 23456778889999999999999999995 4557789999999999998888999999888843
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.25 Score=59.81 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=59.0
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+.+|+|+-+|- .| ...+..+.+.||.+|||+|++.| ....+..+++.+...|+|-+ .|++.+|......
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~~ 142 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIPRL-IFINKMDRVGADL 142 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCCH
Confidence 57899999972 23 34567889999999999999954 67788899999999999965 4888888521233
Q ss_pred HHHHHHHHhhcc
Q 004554 200 KDLKKMCISSLT 211 (745)
Q Consensus 200 ~~~kK~lk~~f~ 211 (745)
..+...++.+|.
T Consensus 143 ~~~~~~i~~~l~ 154 (687)
T PRK13351 143 FKVLEDIEERFG 154 (687)
T ss_pred HHHHHHHHHHHC
Confidence 344455554443
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.41 Score=51.71 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=80.4
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC--------CC--cceEEEecCceeeEEEEeCCC-----CChH-----HHHh
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT--------GA--LSSTVSSSKYRLRTSVLQAPH-----GDLV-----GCME 140 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~--------~~--g~~tv~~~r~k~R~tfie~~~-----~dl~-----~mLD 140 (745)
.|||||.|..+.. .| +.++.++.+ +. ....++.. -...+.|+-.|- +-|+ ....
T Consensus 8 fVaIiGrPNvGKS-TL----lN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHH-HH----HHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 5999999986553 44 333333332 11 22223333 256777876652 2232 3456
Q ss_pred HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Kl 220 (745)
+.+=||+||||+|+.. ++...-+.+|+.|+....| ++.+++.+|. -+.......+......-++ -..+
T Consensus 82 sl~dvDlilfvvd~~~--------~~~~~d~~il~~lk~~~~p-vil~iNKID~--~~~~~~l~~~~~~~~~~~~-f~~i 149 (298)
T COG1159 82 ALKDVDLILFVVDADE--------GWGPGDEFILEQLKKTKTP-VILVVNKIDK--VKPKTVLLKLIAFLKKLLP-FKEI 149 (298)
T ss_pred HhccCcEEEEEEeccc--------cCCccHHHHHHHHhhcCCC-eEEEEEcccc--CCcHHHHHHHHHHHHhhCC-cceE
Confidence 6778999999999994 4777888899999983344 5666777774 1111111233333333333 3467
Q ss_pred EEeCC--HHHHHHHHHHHhhccc
Q 004554 221 YAADT--KDELHKFLWLFKEQRL 241 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~~~k~ 241 (745)
|.+|. -..+..|+..|...-+
T Consensus 150 vpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 150 VPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred EEeeccccCCHHHHHHHHHHhCC
Confidence 77663 3344555555554443
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.64 Score=44.73 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=72.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----cc-eEEEecC---ceeeEEEEeCCCCC------------hHHHHh
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----LS-STVSSSK---YRLRTSVLQAPHGD------------LVGCME 140 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----g~-~tv~~~r---~k~R~tfie~~~~d------------l~~mLD 140 (745)
.|+|+|.++.+.. +| ++.++...... ++ ..+..+. ...+++|+..| .- ..++..
T Consensus 2 ~i~~~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKS-SL----VNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTP-GLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred eEEEEcCCCCCHH-HH----HHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECC-CcCCccccCCchHHHHHHHH
Confidence 4789999987765 66 55554433321 11 1122111 13688999876 32 122333
Q ss_pred HHhhcceEEEEeeCCCccccccccccC-hHHHHHHHHHHhc--CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED 217 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd-~eg~e~L~~l~~q--GlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~ 217 (745)
.+-.+|.+|+|+|++.. ..+. ....+++..++.. +.| ++.|++..|. .......+ ++.+. ... .
T Consensus 76 ~~~~~d~~l~v~d~~~~------~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl--~~~~~~~~-~~~~~--~~~-~ 142 (168)
T cd01897 76 LAHLRAAVLFLFDPSET------CGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDL--LTFEDLSE-IEEEE--ELE-G 142 (168)
T ss_pred HHhccCcEEEEEeCCcc------cccchHHHHHHHHHHHhhcCcCC-eEEEEEcccc--CchhhHHH-HHHhh--hhc-c
Confidence 33457999999999842 1221 2234566666554 554 6677888885 22112211 22221 112 4
Q ss_pred CeeEEeCC--HHHHHHHHHHHh
Q 004554 218 CKFYAADT--KDELHKFLWLFK 237 (745)
Q Consensus 218 ~Klf~l~~--~~e~~nL~R~I~ 237 (745)
.++|..|. ...+..|...|+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred CceEEEEecccCCHHHHHHHHH
Confidence 56777773 334555555554
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.37 Score=50.23 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=51.7
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+..+.|+-+|- .+ ...+..+++.||.+|||+|++.| +...+.++++.+...|+| ++.|++.+|.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 56788998872 23 45678889999999999999954 677889999999999997 6777887774
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.83 Score=52.79 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCCC-----------Ch
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPHG-----------DL 135 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g----~--~tv~~~r~k~R~tfie~~~~-----------dl 135 (745)
-+.-|+|+|.++.+.. +| +..|..... .. | + .++... .+.+.|+-.+ . ..
T Consensus 210 ~~~kI~iiG~~nvGKS-SL----in~l~~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~~l~DTa-G~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKS-SL----LNKLAGEERSVVDDVAGTTVDPVDSLIELG--GKTWRFVDTA-GLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHH-HH----HHHHhCCCcccccCCCCccCCcceEEEEEC--CEEEEEEECC-CccccccccchHHH
Confidence 3677899999987765 66 444433221 11 1 1 122222 2467777665 3 22
Q ss_pred HHH---HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch-hhhHHHHHHHHhhcc
Q 004554 136 VGC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL-KKRKDLKKMCISSLT 211 (745)
Q Consensus 136 ~~m---LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~-Kk~~~~kK~lk~~f~ 211 (745)
.+. +.+.+-||++|+|+|++.+ +......++..+...|.| ++.|++..|... ..+....+.+...+.
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~--------~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~~~~~~~~i~~~l~ 352 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEP--------ISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDRRYYLEREIDRELA 352 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCChhHHHHHHHHHHHhcc
Confidence 222 3466889999999999954 445555778888888987 566788777511 112233444444443
Q ss_pred cccCCCCeeEEeC
Q 004554 212 SEFPEDCKFYAAD 224 (745)
Q Consensus 212 ~e~~~~~Klf~l~ 224 (745)
.. ..+.++.+|
T Consensus 353 ~~--~~~~~~~~S 363 (472)
T PRK03003 353 QV--PWAPRVNIS 363 (472)
T ss_pred cC--CCCCEEEEE
Confidence 22 136777777
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.38 Score=56.45 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=57.7
Q ss_pred eeeEEEEeCCC-CChHH-HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl~~-mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
..+++++-+|- .|+.. +.-+...||.+|+|+|++.| ++..+..+++.++..|+| ++.+++.+|......
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~ 148 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP 148 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH
Confidence 46799999872 23433 66677899999999999954 778899999999999999 777899888521222
Q ss_pred HHHHHHHHhhc
Q 004554 200 KDLKKMCISSL 210 (745)
Q Consensus 200 ~~~kK~lk~~f 210 (745)
..+...++..|
T Consensus 149 ~~~l~~i~~~l 159 (526)
T PRK00741 149 LELLDEIEEVL 159 (526)
T ss_pred HHHHHHHHHHh
Confidence 23444444443
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.93 Score=54.65 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=60.3
Q ss_pred eeeEEEEeCCCCC--h-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 004554 122 RLRTSVLQAPHGD--L-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (745)
Q Consensus 122 k~R~tfie~~~~d--l-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk 198 (745)
..+++|+-+| .. + ..+..+...||.+|+++|++.| ....+..+++.+...|+|.++ |++.+|.....
T Consensus 59 ~~~i~liDtP-G~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~~ 128 (668)
T PRK12740 59 GHKINLIDTP-GHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVPRII-FVNKMDRAGAD 128 (668)
T ss_pred CEEEEEEECC-CcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCCEEE-EEECCCCCCCC
Confidence 4689999998 43 2 4577889999999999999954 566788899999999999665 88998852123
Q ss_pred hHHHHHHHHhhcc
Q 004554 199 RKDLKKMCISSLT 211 (745)
Q Consensus 199 ~~~~kK~lk~~f~ 211 (745)
..++.+.++.+|.
T Consensus 129 ~~~~~~~l~~~l~ 141 (668)
T PRK12740 129 FFRVLAQLQEKLG 141 (668)
T ss_pred HHHHHHHHHHHHC
Confidence 3456666766654
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.46 Score=48.57 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=48.8
Q ss_pred ceeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 121 YRLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 121 ~k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+.+++|+-+|- .++ ..++.....||.+|+|+|++.+ ...++.++++.+..+|+| ++.|++.+|.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG--------VTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 357899998872 233 4677788999999999999854 445667888888888977 5567777774
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.27 Score=56.73 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=66.3
Q ss_pred ccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cce----E--EEecCceeeEEEEeCCCCC----
Q 004554 70 RASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LSS----T--VSSSKYRLRTSVLQAPHGD---- 134 (745)
Q Consensus 70 R~~~~~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g~~----t--v~~~r~k~R~tfie~~~~d---- 134 (745)
|.+|+..+.+..|+|||.++.+.. +| +..|+.... .. |.. . +... ...+.++.++--+
T Consensus 29 ~~~~~~~~~~~~V~IvG~~nvGKS-SL----~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 29 ELEAAEGGPLPVVAVVGRPNVGKS-TL----VNRILGRREAVVEDVPGVTRDRVSYDAEWN--GRRFTVVDTGGWEPDAK 101 (472)
T ss_pred hhhcccCCCCCEEEEEcCCCCCHH-HH----HHHHhCcCcccccCCCCCCEeeEEEEEEEC--CcEEEEEeCCCcCCcch
Confidence 334444445557999999998775 67 444433221 11 211 1 1112 2468888876211
Q ss_pred -h----HH-HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 135 -L----VG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 135 -l----~~-mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+ .. +.-+.+-||+||||+|++.+ ....-.++++.|+..|.| ++.|++.+|.
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~--------~s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVG--------ATATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 1 11 23357889999999999965 333346788888888877 6678888885
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.63 Score=43.95 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=60.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCC-ChHHH-HhHHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~R~tfie~~~~-dl~~m-LD~aKvADlVll 150 (745)
|+|+|+++++.. +| +..+....... -...+..+...-+++++.++.. +..++ ....+-+|.+++
T Consensus 2 i~i~G~~~~GKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 2 VVVLGAGGVGKS-AI----TIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL 76 (160)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 689999998775 56 44443222111 1223333434567888999842 22332 244567999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~qG--lP~vigvl~~L~~ 194 (745)
|+|.+.. ..++....-...+++..+ -+.++.|+++.|.
T Consensus 77 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 77 VYSITDR------ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 9998742 335544444444444444 4566778898886
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.25 Score=46.45 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=53.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-cceEEEecCceeeEEEEeCCCCC-------hHHHHhHHhhcceEEEEee
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-LSSTVSSSKYRLRTSVLQAPHGD-------LVGCMEMAKVADLVAFVAS 153 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-g~~tv~~~r~k~R~tfie~~~~d-------l~~mLD~aKvADlVlllid 153 (745)
|+|+|.++.+.. +| +..|....... ..+++... . .++..+ +. ..+++...+-||.+|+|+|
T Consensus 3 v~liG~~~vGKS-sL----~~~l~~~~~~~~~t~~~~~~---~--~~iDt~-G~~~~~~~~~~~~~~~~~~ad~vilv~d 71 (142)
T TIGR02528 3 IMFIGSVGCGKT-TL----TQALQGEEILYKKTQAVEYN---D--GAIDTP-GEYVENRRLYSALIVTAADADVIALVQS 71 (142)
T ss_pred EEEECCCCCCHH-HH----HHHHcCCccccccceeEEEc---C--eeecCc-hhhhhhHHHHHHHHHHhhcCCEEEEEec
Confidence 789999998776 67 55554443322 33333322 1 456665 32 4456667889999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
++.+ ..|.. ..++..+ +- .++.|++..|.
T Consensus 72 ~~~~------~s~~~--~~~~~~~---~~-p~ilv~NK~Dl 100 (142)
T TIGR02528 72 ATDP------ESRFP--PGFASIF---VK-PVIGLVTKIDL 100 (142)
T ss_pred CCCC------CcCCC--hhHHHhc---cC-CeEEEEEeecc
Confidence 9854 22332 2344332 33 45667788885
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.63 Score=46.80 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=57.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cce--EEEecCceeeEEEEeCCCCC-----------hHHH
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSS--TVSSSKYRLRTSVLQAPHGD-----------LVGC 138 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~------g~~--tv~~~r~k~R~tfie~~~~d-----------l~~m 138 (745)
..|+|+|+++++.. +| ++.++..... . .+. .+..+. ...++|+..| +- +.++
T Consensus 42 ~~I~iiG~~g~GKS-tL----l~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~-G~~~~~~~~~~~~~~~~ 114 (204)
T cd01878 42 PTVALVGYTNAGKS-TL----FNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTV-GFIRDLPHQLVEAFRST 114 (204)
T ss_pred CeEEEECCCCCCHH-HH----HHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCC-ccccCCCHHHHHHHHHH
Confidence 57889999998765 66 4444433211 1 111 122222 2378888776 42 2344
Q ss_pred HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 139 LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
+..+.-||.+++++|++.+ ..++ ....++..++..|. ..++.|++..|.
T Consensus 115 ~~~~~~~d~ii~v~D~~~~------~~~~-~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 115 LEEVAEADLLLHVVDASDP------DYEE-QIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred HHHHhcCCeEEEEEECCCC------Chhh-HHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 4556679999999999853 1122 12233444444443 347788898885
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.42 Score=56.06 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=60.1
Q ss_pred eeeEEEEeCCC-CChHH-HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~dl~~-mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
..++.|+-+|- .|+.. +..+...||.+|+|+|++. +++..+..++..++..|+| +|.+++.+|......
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~--------gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~ 149 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAK--------GVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDP 149 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCC--------CCCHHHHHHHHHHHhcCCC-EEEEEECccccCCCH
Confidence 46888898872 24443 6777889999999999995 4788899999999999998 667889888521233
Q ss_pred HHHHHHHHhhccc
Q 004554 200 KDLKKMCISSLTS 212 (745)
Q Consensus 200 ~~~kK~lk~~f~~ 212 (745)
.++...++.++..
T Consensus 150 ~~ll~~i~~~l~~ 162 (527)
T TIGR00503 150 LELLDEVENELKI 162 (527)
T ss_pred HHHHHHHHHHhCC
Confidence 3455566655543
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.99 Score=44.80 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC-----Cc----ceEEEec-CceeeEEEEeCCC-CChHHHHhH-Hhhcc
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----AL----SSTVSSS-KYRLRTSVLQAPH-GDLVGCMEM-AKVAD 146 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~g----~~tv~~~-r~k~R~tfie~~~-~dl~~mLD~-aKvAD 146 (745)
+.-|+++|.++++.. +| +..+...... .| .+++..+ .....+.++..+- ..+..+... .+.||
T Consensus 3 ~~kv~~vG~~~~GKT-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 77 (183)
T cd04152 3 SLHIVMLGLDSAGKT-TV----LYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTD 77 (183)
T ss_pred ceEEEEECCCCCCHH-HH----HHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCC
Confidence 456899999998876 66 4444322111 12 2233221 1235677887652 225555554 67899
Q ss_pred eEEEEeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd---~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+|+|+|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 78 ~ii~v~D~~~~------~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 78 GIVFVVDSVDV------ERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 99999999853 1233 2444566655556776 5666787775
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.93 Score=55.17 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=75.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceE--EEecCceeeEEEEeCCCC-----------ChH
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSST--VSSSKYRLRTSVLQAPHG-----------DLV 136 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~------g~~t--v~~~r~k~R~tfie~~~~-----------dl~ 136 (745)
+.-|+|+|.++.+.. +| +..+..... .. .++. +... ...++|+-++ . ...
T Consensus 450 ~~kI~ivG~~nvGKS-SL----in~l~~~~~~~v~~~~gtT~d~~~~~~~~~--~~~~~liDTa-G~~~~~~~~~~~e~~ 521 (712)
T PRK09518 450 LRRVALVGRPNVGKS-SL----LNQLTHEERAVVNDLAGTTRDPVDEIVEID--GEDWLFIDTA-GIKRRQHKLTGAEYY 521 (712)
T ss_pred CcEEEEECCCCCCHH-HH----HHHHhCccccccCCCCCCCcCcceeEEEEC--CCEEEEEECC-CcccCcccchhHHHH
Confidence 356789999988775 67 444433321 11 2221 2223 3467788876 3 222
Q ss_pred HH---HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhccc
Q 004554 137 GC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTS 212 (745)
Q Consensus 137 ~m---LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~~kK~lk~~f~~ 212 (745)
+. +.+.+-||++|+|+|++.+ +......+++.+...|.| ++.|++..|. +.......++.+...|..
T Consensus 522 ~~~r~~~~i~~advvilViDat~~--------~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~~~~~~~~~~~~l~~ 592 (712)
T PRK09518 522 SSLRTQAAIERSELALFLFDASQP--------ISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFRRQRLERLWKTEFDR 592 (712)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhHHHHHHHHHHHhccC
Confidence 22 3456789999999999954 556666788888888887 5567887774 111122344445444432
Q ss_pred ccCCCCeeEEeC
Q 004554 213 EFPEDCKFYAAD 224 (745)
Q Consensus 213 e~~~~~Klf~l~ 224 (745)
+ ..+.++.+|
T Consensus 593 -~-~~~~ii~iS 602 (712)
T PRK09518 593 -V-TWARRVNLS 602 (712)
T ss_pred -C-CCCCEEEEE
Confidence 2 256777777
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.58 Score=44.58 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=60.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADlVl 149 (745)
|+|+|+++++.. +| ++.+....... ...++.....+.++.++.++..+ ...+ .-.++-||.++
T Consensus 3 v~v~G~~~~GKT-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 3 IILIGDSGVGKS-SL----LSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 789999998775 56 45554333211 22334444455788899887322 3333 33456799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
+++|++.. ..|+.- ..+|+.+..+.- +.++.|.++.|.
T Consensus 78 lv~d~~~~------~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 78 LVYDITNR------ESFENL-KNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 99999842 234432 236666665542 245566788875
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.42 Score=55.25 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHHH-hHHhh
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKV 144 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~-~dl~~mL-D~aKv 144 (745)
+-|-||+|+|-=.-+.. .| +..+.+....+ |-++|..+ .=+++||+--|- .-+.+|= --|+|
T Consensus 151 ~RpPVVTiMGHVDHGKT-TL----LD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~v 224 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKT-TL----LDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANV 224 (683)
T ss_pred CCCCeEEEeecccCChh-hH----HHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcc
Confidence 56778999996443222 33 44444333322 66666666 348999998872 2355553 34899
Q ss_pred cceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh-ccc-ccCCCCeeEE
Q 004554 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS-LTS-EFPEDCKFYA 222 (745)
Q Consensus 145 ADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~-f~~-e~~~~~Klf~ 222 (745)
+|+|+||+.|.. ++=..|-|-+.-.+..++|=|+. ++.+|.....--++++.|... +-- .++.+.-+..
T Consensus 225 tDIvVLVVAadD--------GVmpQT~EaIkhAk~A~VpiVvA-inKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 225 TDIVVLVVAADD--------GVMPQTLEAIKHAKSANVPIVVA-INKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred ccEEEEEEEccC--------CccHhHHHHHHHHHhcCCCEEEE-EeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEE
Confidence 999999999984 47789999999999999997665 677774224444555554432 222 2444566666
Q ss_pred eC
Q 004554 223 AD 224 (745)
Q Consensus 223 l~ 224 (745)
+|
T Consensus 296 iS 297 (683)
T KOG1145|consen 296 IS 297 (683)
T ss_pred ee
Confidence 66
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.31 Score=55.15 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=65.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC---C--cc------eEEEecCceeeEEEEeCCCCC----------h-HHH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--LS------STVSSSKYRLRTSVLQAPHGD----------L-VGC 138 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~---~--g~------~tv~~~r~k~R~tfie~~~~d----------l-~~m 138 (745)
.|+|||.++.+.. +| +..|++.... . |. ..+... .++++++.+| +- + ..+
T Consensus 1 ~i~ivG~~nvGKS-tL----~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--~~~~~liDTp-G~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKS-TL----FNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--GREFILIDTG-GIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHH-HH----HHHHhCCCcceecCCCCcccCceEEEEEEC--CeEEEEEECC-CCCCcchhHHHHHHHHH
Confidence 3799999998775 56 4444332211 1 11 122222 3578999987 41 1 224
Q ss_pred HhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 139 LD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+.+.+-||+||||+|++.| +.....++++.|+..|.| ++.|++..|.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~ 119 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDG 119 (429)
T ss_pred HHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccC
Confidence 5677889999999999954 667778899999999988 6668888875
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.73 Score=43.34 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=44.9
Q ss_pred eeEEEEeCCC-CChH---------HHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccC
Q 004554 123 LRTSVLQAPH-GDLV---------GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDL 192 (745)
Q Consensus 123 ~R~tfie~~~-~dl~---------~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L 192 (745)
..+.|+.+|. .+.. ..+....-||++++++|++.+ +.....+++..++.++.| ++.|++..
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~--------~~~~~~~~~~~~~~~~~p-iiiv~nK~ 115 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG--------LTPADEEIAKYLRKSKKP-VILVVNKV 115 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc--------CCccHHHHHHHHHhcCCC-EEEEEECc
Confidence 5788898873 2211 234567789999999999843 445556788888888855 66788888
Q ss_pred Cc
Q 004554 193 PT 194 (745)
Q Consensus 193 ~~ 194 (745)
|.
T Consensus 116 D~ 117 (157)
T cd01894 116 DN 117 (157)
T ss_pred cc
Confidence 85
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=93.98 E-value=1 Score=43.43 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=72.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCC---cceEEEecCceeeEEEEeCCCCC---hHHHHhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGA---LSSTVSSSKYRLRTSVLQAPHGD---LVGCMEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~------~~~---g~~tv~~~r~k~R~tfie~~~~d---l~~mLD~aKvADlVl 149 (745)
|+|+|+++.+.. +| +..|.... .+. ....+.+....-++.++..+... .......++-||.+|
T Consensus 2 i~vvG~~~~GKt-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 2 IAVLGASGVGKS-AL----VVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred EEEECCCCCcHH-HH----HHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 789999987765 56 33332111 111 12223334445578889876322 233556778899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeE
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFY 221 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~-----qGlP~vigvl~~L~~~~Kk---~~~~kK~lk~~f~~e~~~~~Klf 221 (745)
+++|++.. ..|+.- ...+..++. .+.| ++.|.+..|....+ .....+.. ..+ +..+|
T Consensus 77 ~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~--~~~~~ 141 (165)
T cd04146 77 LVYSITDR------SSFDEI-SQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVSTEEGEKLA-----SEL--GCLFF 141 (165)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCHHHHHHHH-----HHc--CCEEE
Confidence 99999853 335422 122333332 3555 56677877751111 11112211 112 35677
Q ss_pred EeCCH---HHHHHHHHHHhh
Q 004554 222 AADTK---DELHKFLWLFKE 238 (745)
Q Consensus 222 ~l~~~---~e~~nL~R~I~~ 238 (745)
..|.. ..+..+...|+.
T Consensus 142 e~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 142 EVSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred EeCCCCCchhHHHHHHHHHH
Confidence 77753 346777776664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.6 Score=41.19 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=44.3
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCee
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~~~kK~lk~~f~~e~~~~~Kl 220 (745)
...++++++++|.... +.....++++.|...++| ++.|+++.|. ....+...+..+...+.. +.....+
T Consensus 79 ~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 148 (170)
T cd01876 79 RENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPI 148 (170)
T ss_pred ChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCce
Confidence 3456789999998742 445667788888888877 6667788774 112223333334433332 2235677
Q ss_pred EEeC
Q 004554 221 YAAD 224 (745)
Q Consensus 221 f~l~ 224 (745)
|..+
T Consensus 149 ~~~S 152 (170)
T cd01876 149 ILFS 152 (170)
T ss_pred EEEe
Confidence 7766
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=93.83 E-value=2 Score=52.58 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=51.9
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+..+.||-||- .| ...+..+...||.+|+|+|+.. ++...+..+++.+...|+|. |.+++.+|.
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~--------g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE--------GVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC--------CCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 56789999872 34 4567778899999999999995 47788999999988999996 667887773
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.62 Score=44.88 Aligned_cols=102 Identities=9% Similarity=0.071 Sum_probs=58.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC--cc--------eEEEecCceeeEEEEeCCC-CChHHH-HhHHhhcce
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LS--------STVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADL 147 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g~--------~tv~~~r~k~R~tfie~~~-~dl~~m-LD~aKvADl 147 (745)
+-|+|+|+++.+.. +| ++.++...... ++ .++.....+-++.|+.++. .....+ -...+.||.
T Consensus 8 ~~v~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 8 FKIVLIGNAGVGKT-CL----VRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred eEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 56899999988775 56 44443222111 11 1234444456778888873 234443 567788999
Q ss_pred EEEEeeCCCccccccccccChHHHHHH---HHHHhcCCCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCL---SVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L---~~l~~qGlP~vigvl~~L~~ 194 (745)
+|+++|.+.+ ..|+.- ...+ +.+...++|. +.|.+..|.
T Consensus 83 ~i~v~d~~~~------~s~~~~-~~~~~~l~~~~~~~~~~-i~v~NK~D~ 124 (169)
T cd04114 83 LILTYDITCE------ESFRCL-PEWLREIEQYANNKVIT-ILVGNKIDL 124 (169)
T ss_pred EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeE-EEEEECccc
Confidence 9999998853 224321 1233 3333346665 455777774
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=93.79 E-value=1 Score=43.75 Aligned_cols=102 Identities=7% Similarity=-0.001 Sum_probs=61.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~------~~g----~~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlV 148 (745)
=|+|+|.++.+.. +| +..|..... +.| ..++.......+++++..+-. .+.++. -.++-||.+
T Consensus 6 ki~vvG~~~vGKS-sL----l~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 6 KYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 4889999998775 56 444443321 112 233444444568888887632 234433 356889999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP--~vigvl~~L~~ 194 (745)
|||+|++.. ..|+. -..++..++.+..| .++.|.++.|.
T Consensus 81 l~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 81 LLVYDITRR------ETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEECCCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 999999842 23432 33566666554333 45667788885
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.66 Score=56.19 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~ 199 (745)
+..++|+-+|- .+ ...+..+...||.+|||+|++.| ....+.++++.++.+|+|.++ |++.+|......
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~ 144 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVPRIA-FVNKMDKTGANF 144 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCCEEE-EEECCCCCCCCH
Confidence 57899998872 22 34577788999999999999954 667788999999999999764 788888511222
Q ss_pred HHHHHHHHhhc
Q 004554 200 KDLKKMCISSL 210 (745)
Q Consensus 200 ~~~kK~lk~~f 210 (745)
.++...++..+
T Consensus 145 ~~~~~~i~~~l 155 (689)
T TIGR00484 145 LRVVNQIKQRL 155 (689)
T ss_pred HHHHHHHHHHh
Confidence 34445555443
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.2 Score=41.72 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=59.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c--ceEEEecCceeeEEEEeCCCC-ChHHH-HhHHhhcceEEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L--SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFV 151 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g--~~tv~~~r~k~R~tfie~~~~-dl~~m-LD~aKvADlVlll 151 (745)
|+++|+++.+.. +| ++.++...... + ...+..+. ..+.++..+-. .+..+ -..++-+|.+|+|
T Consensus 2 i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKT-TL----VNVIAGGQFSEDTIPTVGFNMRKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHH-HH----HHHHccCCCCcCccCCCCcceEEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 789999998875 66 55555432211 2 13333343 56778877621 23333 3557889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 004554 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (745)
Q Consensus 152 idas~g~~~~~~~~fd~eg~e~L~~l~~q---GlP~vigvl~~L~~ 194 (745)
+|++.. ..|+.....+..+++.+ +.| ++.|++..|.
T Consensus 75 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~ 113 (159)
T cd04159 75 VDAADR------TALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDL 113 (159)
T ss_pred EECCCH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence 999842 23444444555555543 444 5777888875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.47 Score=46.33 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=58.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC-----CCCcceEEEecCceeeEEEEeCCCCC--hHHH-HhHHhhcceEEEEee
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFVAS 153 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~-----~~~g~~tv~~~r~k~R~tfie~~~~d--l~~m-LD~aKvADlVlllid 153 (745)
|+++|+++++.. +| ++.++... .+.|..+....-.+.+++++.++ .. +..+ ...++-||.+|+|+|
T Consensus 2 i~~~G~~~~GKT-sl----~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~-G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 2 LLTVGLDNAGKT-TL----VSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLG-GGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred EEEECCCCCCHH-HH----HHHHhCCCCccccCcccceEEEEEECCEEEEEEECC-CcHHHHHHHHHHHcCCCEEEEEEE
Confidence 689999998776 66 44443321 11143332222225688999997 43 4444 455788999999999
Q ss_pred CCCccccccccccChHHHHHHHHH-Hh---cCCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVF-RS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l-~~---qGlP~vigvl~~L~~ 194 (745)
++.. ..|+.- ...|..+ +. .+.| ++.|++..|.
T Consensus 76 ~s~~------~s~~~~-~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 76 SSDD------DRVQEV-KEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred CCch------hHHHHH-HHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 9842 224433 3333333 32 3555 6667888885
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.3 Score=51.53 Aligned_cols=132 Identities=12% Similarity=0.197 Sum_probs=68.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC--CC------cceEEEecCceeeEEEEeCCCCCh----------HHHHhHHh
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT--GA------LSSTVSSSKYRLRTSVLQAPHGDL----------VGCMEMAK 143 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~--~~------g~~tv~~~r~k~R~tfie~~~~dl----------~~mLD~aK 143 (745)
|++||+|+.+.. +| +..|+.... .. .|+.-++.-...+|+|+-.| .-+ ...|-.+.
T Consensus 162 V~LVG~PNAGKS-TL----ln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtP-Gliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 162 VGLVGFPSAGKS-SL----ISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVP-GLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred EEEEEcCCCCHH-HH----HHHHhcCCccccccCcccccceEEEEEECCeEEEEEECC-CCccccchhhHHHHHHHHHHH
Confidence 899999987775 66 555543221 11 22221121123578888887 422 33566667
Q ss_pred hcceEEEEeeCCCcc-ccccccccChHHHHHHHHH----------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 004554 144 VADLVAFVASASSFS-EESMSYYIDSFGNQCLSVF----------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS 212 (745)
Q Consensus 144 vADlVlllidas~g~-~~~~~~~fd~eg~e~L~~l----------~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~ 212 (745)
-||+||+|+|++... ..+.-..++..-.++...+ ...+.| +|.|++..|. -........++..+..
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL--~da~el~e~l~~~l~~ 312 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDV--PDARELAEFVRPELEA 312 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccc--hhhHHHHHHHHHHHHH
Confidence 799999999997410 0000011333333444433 234566 4567888875 1112222223333322
Q ss_pred ccCCCCeeEEeCC
Q 004554 213 EFPEDCKFYAADT 225 (745)
Q Consensus 213 e~~~~~Klf~l~~ 225 (745)
. +.++|.+|.
T Consensus 313 ~---g~~Vf~ISA 322 (500)
T PRK12296 313 R---GWPVFEVSA 322 (500)
T ss_pred c---CCeEEEEEC
Confidence 1 467899883
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.1 Score=42.81 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=75.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceEEEEe
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g--~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlVllli 152 (745)
|+|+|.++.+.. +| +..++...... | ..++... +.++.|+.++-. ++..+-. ..+-||.+|+|+
T Consensus 2 v~lvG~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 2 ILILGLDNAGKT-TI----LYRLQLGEVVTTIPTIGFNVETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred EEEECCCCCCHH-HH----HHHHccCCCcCcCCccCcCeEEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 678899887765 56 44442221111 1 1122222 467889988732 3555533 467899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcchhh--hHHHHHHHHhhcccccC-CCCeeEEeCC--
Q 004554 153 SASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDLKK--RKDLKKMCISSLTSEFP-EDCKFYAADT-- 225 (745)
Q Consensus 153 das~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~~~Kk--~~~~kK~lk~~f~~e~~-~~~Klf~l~~-- 225 (745)
|++.. ..+......+...++...+ ..++.|+++.|.. +. ...+.+.+.. .++. .+.++|.+|.
T Consensus 75 d~~~~------~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-~~~~~~~i~~~~~~---~~~~~~~~~~~~~Sa~~ 144 (158)
T cd04151 75 DSTDR------DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP-GALSEAEISEKLGL---SELKDRTWSIFKTSAIK 144 (158)
T ss_pred ECCCH------HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC-CCCCHHHHHHHhCc---cccCCCcEEEEEeeccC
Confidence 99842 2244434555555554432 3567778888851 21 1223222211 1111 2346888884
Q ss_pred HHHHHHHHHHHh
Q 004554 226 KDELHKFLWLFK 237 (745)
Q Consensus 226 ~~e~~nL~R~I~ 237 (745)
...+..|...|+
T Consensus 145 ~~gi~~l~~~l~ 156 (158)
T cd04151 145 GEGLDEGMDWLV 156 (158)
T ss_pred CCCHHHHHHHHh
Confidence 444556665554
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.4 Score=41.80 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=56.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC--CCC-----cceEEEecCceeeEEEEeCCCCC--hHHH-HhHHhhcceEEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEG--TGA-----LSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFV 151 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~--~~~-----g~~tv~~~r~k~R~tfie~~~~d--l~~m-LD~aKvADlVlll 151 (745)
|+|+|+++.+.. +| ++.|+... ... |.........+.+++++..| .. +..+ -..++-||.+|+|
T Consensus 2 i~~vG~~~~GKT-sl----~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 2 ILVVGLDNSGKT-TI----INQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMS-GQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred EEEECCCCCCHH-HH----HHHHcccCCCcceecCccccceEEEEECCEEEEEEECC-CCHhhHHHHHHHHccCCEEEEE
Confidence 688999988765 66 55554432 111 21111111124678888887 43 3333 3346889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHH-----hcCCCceEEEeccCCc
Q 004554 152 ASASSFSEESMSYYIDSFGNQCLSVFR-----SLGLPSTAVLIRDLPT 194 (745)
Q Consensus 152 idas~g~~~~~~~~fd~eg~e~L~~l~-----~qGlP~vigvl~~L~~ 194 (745)
+|++.. ..|+....++-.+++ ..++| ++.|++..|.
T Consensus 76 ~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl 116 (162)
T cd04157 76 IDSSDR------LRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDL 116 (162)
T ss_pred EeCCcH------HHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccc
Confidence 999853 223322222222333 24666 5668888885
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.5 Score=43.06 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=76.9
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-CC----cc--eEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceEE
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-GA----LS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~~----g~--~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlVl 149 (745)
.+-|+++|+++++.. +| +..++.... .. |. .++... +.++.|+..+-. .+..+. ...+-||.+|
T Consensus 15 ~~kv~~~G~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKT-TI----LYQFLLGEVVHTSPTIGSNVEEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 456889999998775 56 444432111 11 21 122222 357788877622 233333 3468899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCCH
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADTK 226 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP--~vigvl~~L~~~~K-k~~~~kK~lk~~f~~e~~~~~Klf~l~~~ 226 (745)
||+|++.. ..|...-.++.++++..+++ .++.|++..|.... ...+..+.+.-...... ...+|.+|..
T Consensus 88 ~V~D~s~~------~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~--~~~~~~~SA~ 159 (174)
T cd04153 88 LVIDSTDR------ERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDH--TWHIQGCCAL 159 (174)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCC--ceEEEecccC
Confidence 99999853 33554455566666666553 45667888885111 11223333321111111 2356777742
Q ss_pred --HHHHHHHHHHh
Q 004554 227 --DELHKFLWLFK 237 (745)
Q Consensus 227 --~e~~nL~R~I~ 237 (745)
..+..+...|+
T Consensus 160 ~g~gi~e~~~~l~ 172 (174)
T cd04153 160 TGEGLPEGLDWIA 172 (174)
T ss_pred CCCCHHHHHHHHh
Confidence 23555665554
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.1 Score=42.64 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=59.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHH-HHhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~~d-l~~-mLD~aKvADlVl 149 (745)
|+++|.++++.. +| +..+....... ....+..+....+++++.+|-.. ... +-..++-||+++
T Consensus 3 i~liG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii 77 (161)
T cd01861 3 LVFLGDQSVGKT-SI----ITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 789999987765 56 44443322211 12234445555688999987322 333 334578899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHH-HHhcCC-CceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSV-FRSLGL-PSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~-l~~qGl-P~vigvl~~L~~ 194 (745)
+++|.+.. ..|+... ..+.. ++..+- ..++.|+++.|.
T Consensus 78 ~v~d~~~~------~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 78 VVYDITNR------QSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEECcCH------HHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhc
Confidence 99999853 3354433 34444 334441 245666777775
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=93.35 E-value=1 Score=41.57 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHH--------Hh
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGC--------ME 140 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~-~dl~~m--------LD 140 (745)
+=|+++|.++++.. +| +..+....... ....+..+...-.++++.+|. .+..++ .-
T Consensus 2 ~ki~~~G~~~~GKs-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR00231 2 IKIVIVGDPNVGKS-TL----LNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES 76 (161)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence 45889999998775 56 44333222111 111133343335688898872 223322 22
Q ss_pred HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
++.++|++++++++.. ....+...+++.+.. +.| ++.|+++.|.
T Consensus 77 ~i~~~d~~~~v~~~~~--------~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~ 120 (161)
T TIGR00231 77 SLRVFDIVILVLDVEE--------ILEKQTKEIIHHAES-NVP-IILVGNKIDL 120 (161)
T ss_pred EEEEEEEeeeehhhhh--------HhHHHHHHHHHhccc-CCc-EEEEEEcccC
Confidence 3344666666655552 233444555555543 777 5667888886
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.3 Score=40.51 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=58.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceEEEEe
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g--~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlVllli 152 (745)
|+|+|+++++.. +| +..|....... | ...+..+ .+.++.++..+-. .+..+.. ..+-||.+|+|+
T Consensus 2 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 2 VLLLGLDSAGKS-TL----LYKLKHAELVTTIPTVGFNVEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCcccccCccCcceEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 689999998876 56 55554332211 1 1223333 2467888888622 2444433 467799999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 153 das~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
|++.. ..|+..-..+..+++. .+.| ++.|++..|.
T Consensus 76 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (160)
T cd04156 76 DSSDE------ARLDESQKELKHILKNEHIKGVP-VVLLANKQDL 113 (160)
T ss_pred ECCcH------HHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence 99853 2244444444455443 4544 6677887774
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.4 Score=49.93 Aligned_cols=144 Identities=8% Similarity=0.129 Sum_probs=76.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cceEEEec-CceeeEEEEeCCCCCh----------HHHHhHH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSSTVSSS-KYRLRTSVLQAPHGDL----------VGCMEMA 142 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-------~~-g~~tv~~~-r~k~R~tfie~~~~dl----------~~mLD~a 142 (745)
|++||+|..+.. +| ++.+++... +. .|+.-++. .-.++|+|+-.| .=+ ..+|...
T Consensus 162 ValVG~PNaGKS-TL----ln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtP-Gi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 162 VGLLGLPNAGKS-TF----IRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIP-GLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred EEEEcCCCCCHH-HH----HHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCC-CccccccchhhHHHHHHHHH
Confidence 899999987664 56 444443221 11 22222221 113679999887 432 3467778
Q ss_pred hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 004554 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED 217 (745)
Q Consensus 143 KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~q-----GlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~ 217 (745)
.=||++|+|+|++..... ..++ .-..+++.|... +.|. +.|++.+|. -.+..+.+.++.+. ..+...
T Consensus 236 ~radvlL~VVD~s~~~~~---d~~e-~~~~l~~eL~~~~~~L~~kP~-IlVlNKiDl--~~~~el~~~l~~l~-~~~~~~ 307 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGS---DPVE-NARIIINELEKYSPKLAEKPR-WLVFNKIDL--LDEEEAEERAKAIV-EALGWE 307 (390)
T ss_pred HhCCEEEEEeccCccccc---ChHH-HHHHHHHHHHhhhhhhcCCCE-EEEEeCCcc--CChHHHHHHHHHHH-HHhCCC
Confidence 889999999998721000 1111 123444555443 4554 557898886 11222223333222 122222
Q ss_pred CeeEEeCC--HHHHHHHHHHHhhc
Q 004554 218 CKFYAADT--KDELHKFLWLFKEQ 239 (745)
Q Consensus 218 ~Klf~l~~--~~e~~nL~R~I~~~ 239 (745)
.++|.+|. ...+..|+..|...
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~ 331 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTF 331 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 36788874 45566777777543
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.2 Score=42.79 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=69.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC--C--cc------eEEEecCceeeEEEEeCCCCC----------hHHHHhH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A--LS------STVSSSKYRLRTSVLQAPHGD----------LVGCMEM 141 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~--g~------~tv~~~r~k~R~tfie~~~~d----------l~~mLD~ 141 (745)
|+|+|.++.+.. +| ++.|+..... . ++ -.+..+. ..+++|+..| .- ....+..
T Consensus 3 v~ivG~~~~GKS-tl----~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtp-G~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01898 3 VGLVGLPNAGKS-TL----LSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIP-GLIEGASEGKGLGHRFLRH 75 (170)
T ss_pred eEEECCCCCCHH-HH----HHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecC-cccCcccccCCchHHHHHH
Confidence 789999997775 66 5555433211 1 11 1122222 1378888887 31 1233444
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHH-hcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR-SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~-~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Kl 220 (745)
.+-||.+|+|+|++.+. +....+..+-.++..... ..+.| ++.|++..|. ..+......++.... ... +..+
T Consensus 76 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl--~~~~~~~~~~~~~~~-~~~-~~~~ 148 (170)
T cd01898 76 IERTRLLLHVIDLSGDD--DPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL--LDEEELFELLKELLK-ELW-GKPV 148 (170)
T ss_pred HHhCCEEEEEEecCCCC--CHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc--CCchhhHHHHHHHHh-hCC-CCCE
Confidence 55699999999998520 000012222223333221 12344 4567888885 222222222222222 211 3456
Q ss_pred EEeCC--HHHHHHHHHHHh
Q 004554 221 YAADT--KDELHKFLWLFK 237 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~ 237 (745)
|.+|. ...+..|...|+
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 149 FPISALTGEGLDELLRKLA 167 (170)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 66663 445556666554
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.44 Score=53.52 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=72.4
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCc-cccccccccChHHHHHHHHHHhcCCCceEEEeccCCc---c
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---D 195 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g-~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~---~ 195 (745)
|.++|++.||- +| +-.||--|..||..+|+|||+.| +| -+.+.+-.|.|-+=.++.+|+...|.+++..|. +
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE--~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE--AGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccc--cccccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 57899999974 44 67899999999999999999975 11 011245678999999999999999999998884 2
Q ss_pred hhhhHHHHHHHHhhccc--ccCCCCeeEEeC
Q 004554 196 LKKRKDLKKMCISSLTS--EFPEDCKFYAAD 224 (745)
Q Consensus 196 ~Kk~~~~kK~lk~~f~~--e~~~~~Klf~l~ 224 (745)
-++=..++..+.+.+.. +.++..++..+|
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiS 192 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPIS 192 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecc
Confidence 23334566666664433 223345566666
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.1 Score=41.09 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=58.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC-----C-c----ceEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-L----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~-g----~~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlV 148 (745)
-|+|+|+++++.. +| +..|...... . + +..+..+...-.++|+.+|.. ....+. ..++-||.+
T Consensus 2 ki~viG~~~~GKS-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 76 (172)
T cd01862 2 KVIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCC 76 (172)
T ss_pred EEEEECCCCCCHH-HH----HHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEE
Confidence 3789999988775 56 4444322211 1 2 223444555567788898732 233333 356779999
Q ss_pred EEEeeCCCccccccccccCh---HHHHHHHHHHhc---CCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~---eg~e~L~~l~~q---GlP~vigvl~~L~~ 194 (745)
|+|+|++.+ ..|+. +-.+++..+... +.|- +.|++..|.
T Consensus 77 i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 121 (172)
T cd01862 77 VLVYDVTNP------KSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDL 121 (172)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECccc
Confidence 999999853 22432 333444444322 5664 455677764
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.73 Score=49.82 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=118.5
Q ss_pred eeEEEEeCCCCC--hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 004554 123 LRTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR 199 (745)
Q Consensus 123 ~R~tfie~~~~d--l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~ 199 (745)
|-++|+.||--| |..||.-|-|-|-+||+|-|.. ..=...|-|-|-++...-+-.+|-+-+.+|. .-...
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NE-------sCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE-------SCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCC-------CCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 678999999667 5679999999999999998874 3345688889999888888888887778885 11223
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCCccccCCCeEEEEeeE-eccCC-C-CCCCceEEE
Q 004554 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD-VVADD-C-NSGKCTLLL 274 (745)
Q Consensus 200 ~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e-~~~~~-~-~~~~~~l~v 274 (745)
.+.-..+++++..-..+++-+..++. +-.+--++-+|...-|-|++==.+.|-|++=|-= +..+. + .+..|-|.=
T Consensus 198 ~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvag 277 (466)
T KOG0466|consen 198 LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAG 277 (466)
T ss_pred HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcccc
Confidence 45677889999998988999999884 4567788999999999998888899999887743 33221 1 111222221
Q ss_pred EEEEeCCCCCCCCeEEe-CC
Q 004554 275 HGYLRAHCLSVNQLVHI-SG 293 (745)
Q Consensus 275 ~GyvRG~~l~~n~lVHI-pG 293 (745)
---+.|. |++|+.|.| ||
T Consensus 278 gsil~Gv-lkvg~~IEiRPG 296 (466)
T KOG0466|consen 278 GSILKGV-LKVGQEIEIRPG 296 (466)
T ss_pred chhhhhh-hhcCcEEEecCc
Confidence 1122333 678888877 44
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.7 Score=49.47 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=81.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC------CC--C-cceEEEecCceeeEEEEeCC-------------CCCh
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TG--A-LSSTVSSSKYRLRTSVLQAP-------------HGDL 135 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~------~~--~-g~~tv~~~r~k~R~tfie~~-------------~~dl 135 (745)
-|+=|||+|=|..+.. +| +..+.++. +. + -+|++...+.-|++.||.-- .-.+
T Consensus 177 ~~ikiaiiGrPNvGKS-sL----iN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKS-SL----INAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCch-HH----HHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 6889999998886654 66 44443332 11 0 23333222112333333210 1234
Q ss_pred HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE--eccCCcchhhhHHHHHHHHhhcccc
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL--IRDLPTDLKKRKDLKKMCISSLTSE 213 (745)
Q Consensus 136 ~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigv--l~~L~~~~Kk~~~~kK~lk~~f~~e 213 (745)
...+-+..-||+||||+||+. +|.++-..++..+...|-|-||.| -.-++.+.......++.+.+.|.+-
T Consensus 252 ~rt~~aI~~a~vvllviDa~~--------~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATE--------GISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCC--------CchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 455666677999999999994 588999999999999999999887 1111211133445666676644332
Q ss_pred cCCCCeeEEeCC
Q 004554 214 FPEDCKFYAADT 225 (745)
Q Consensus 214 ~~~~~Klf~l~~ 225 (745)
+.+.++++|.
T Consensus 324 --~~a~i~~iSA 333 (444)
T COG1160 324 --DFAPIVFISA 333 (444)
T ss_pred --cCCeEEEEEe
Confidence 3689999883
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=41.84 Aligned_cols=136 Identities=8% Similarity=0.044 Sum_probs=73.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCC-ChHHH-HhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~-dl~~m-LD~aKvADlVl 149 (745)
|+|+|+++.+.. +| +..|....... + ...+..+...-++.++.++.. .+..+ ...++-||.+|
T Consensus 3 i~v~G~~~vGKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 3 FIIIGSSGTGKS-CL----LHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 789999998775 66 44443222111 1 223444444568889988732 23333 34467899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEe
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAA 223 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~~~Kk---~~~~kK~lk~~f~~e~~~~~Klf~l 223 (745)
+|+|++.+ ..|.. -.+++..++. .++| ++.|++..|....+ ........+. + +..+|.+
T Consensus 78 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~ 142 (161)
T cd04113 78 LVYDITNR------TSFEA-LPTWLSDARALASPNIV-VILVGNKSDLADQREVTFLEASRFAQE-----N--GLLFLET 142 (161)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEEchhcchhccCCHHHHHHHHHH-----c--CCEEEEE
Confidence 99999853 22432 1234444443 3555 67778888751011 1122222222 1 2457777
Q ss_pred CC--HHHHHHHHHHHh
Q 004554 224 DT--KDELHKFLWLFK 237 (745)
Q Consensus 224 ~~--~~e~~nL~R~I~ 237 (745)
|. ...+..+...|+
T Consensus 143 Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 143 SALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 63 344556655554
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.57 Score=58.00 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=51.4
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
..++.|+-+|- .| +..++.++++||.+|+|+||.. ++...++.+|+.+...|+|.++ +++.+|.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~--------g~~~~t~~~~~~~~~~~~p~iv-~iNK~D~ 156 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE--------GVCVQTETVLRQALQERIRPVL-FINKVDR 156 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC--------CcCccHHHHHHHHHHcCCCEEE-EEEChhh
Confidence 35799999872 23 4678889999999999999995 4888899999999999998754 4565554
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.3 Score=40.53 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=60.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~------~g----~~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlV 148 (745)
=|+|+|+++++.. +| ++.|...... .| ..++......-++.++.++-. ...++. ..++-||.+
T Consensus 3 ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 77 (163)
T cd01860 3 KLVLLGDSSVGKS-SL----VLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAA 77 (163)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEE
Confidence 3789999988775 56 4444333211 13 334555555557777877621 132322 245669999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~--vigvl~~L~~ 194 (745)
|+++|++.. ..|+. ...+|+.++.++-+. ++.|++..|.
T Consensus 78 i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 78 IVVYDITSE------ESFEK-AKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 999999853 33543 456777777776443 3445777774
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=92.16 E-value=2.4 Score=40.38 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=56.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCCC-hHHHH-hHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~------~g----~~tv~~~r~k~R~tfie~~~~d-l~~mL-D~aKvADlVl 149 (745)
|+|+|+++++.. +| +..|+..... .+ +..+..+....++.|+.++... ...+. -.++-||.+|
T Consensus 3 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 77 (161)
T cd01863 3 ILLIGDSGVGKS-SL----LLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence 789999988775 56 4444322111 12 2333344445678888887322 22222 3457799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~q----GlP~vigvl~~L~~ 194 (745)
+++|++.. ..|+.... .++.+..+ +.| ++.|.+..|.
T Consensus 78 ~v~d~~~~------~s~~~~~~-~~~~i~~~~~~~~~~-~~iv~nK~D~ 118 (161)
T cd01863 78 LVYDVTRR------DTFTNLET-WLNELETYSTNNDIV-KMLVGNKIDK 118 (161)
T ss_pred EEEECCCH------HHHHhHHH-HHHHHHHhCCCCCCc-EEEEEECCcc
Confidence 99998853 23443222 45544443 444 4556677774
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.9 Score=41.00 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=58.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~------~~g---~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADlVl 149 (745)
-|+|+|.++.+.. +| +..+..... +.+ ..++..+..+.+++++..+. ..+.++.. ..+-||.+|
T Consensus 3 ki~i~G~~~vGKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 3 KVVVLGSGGVGKS-AL----TVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 4789999998876 56 333322111 111 12344455566788888763 23444443 357799999
Q ss_pred EEeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~---eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
|++|.+.. ..|+. +-.++++.....++| ++.|++..|.
T Consensus 78 lv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 118 (163)
T cd04136 78 LVYSITSQ------SSFNDLQDLREQILRVKDTENVP-MVLVGNKCDL 118 (163)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99998742 22432 223333332334666 5667787775
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.7 Score=41.15 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=59.4
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc--eEEEecCceeeEEEEeCCCCC-hHHHHh-HHhhcceEEE
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS--STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g~--~tv~~~r~k~R~tfie~~~~d-l~~mLD-~aKvADlVll 150 (745)
.=|+++|+++.+.. +| ++.|+...... |. .++... +.++.++..+-.+ +..+.. ..+-||.+||
T Consensus 10 ~kv~i~G~~~~GKT-sl----i~~l~~~~~~~~~~t~g~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 10 MRILMLGLDAAGKT-TI----LYKLKLGQSVTTIPTVGFNVETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred cEEEEECcCCCCHH-HH----HHHHccCCCccccCCcccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34789999998775 56 44443211111 21 122222 3567888776222 444433 3588999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
|+|++.. ..|+..-..+...+.. ++.| ++.|.++.|.
T Consensus 83 v~D~t~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 122 (168)
T cd04149 83 VVDSADR------DRIDEARQELHRIINDREMRDAL-LLVFANKQDL 122 (168)
T ss_pred EEeCCch------hhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCC
Confidence 9999842 2365555555556554 4444 6777888885
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.4 Score=40.30 Aligned_cols=137 Identities=7% Similarity=0.062 Sum_probs=71.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEec--CceeeEEEEeCCCC-ChHHH-HhHHhhcce
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSS--KYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~--r~k~R~tfie~~~~-dl~~m-LD~aKvADl 147 (745)
|+|+|.++++.. +| +..++...... + ..++... ....++.++.++.. ...++ -...+-||.
T Consensus 3 v~~vG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 77 (162)
T cd04106 3 VIVVGNGNVGKS-SM----IQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 77 (162)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence 789999988775 66 55554322211 1 1222222 33457888888632 23343 345678999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCcchhhh---HHHHHHHHhhcccccCCCCeeEE
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPTDLKKR---KDLKKMCISSLTSEFPEDCKFYA 222 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~--~qGlP~vigvl~~L~~~~Kk~---~~~kK~lk~~f~~e~~~~~Klf~ 222 (745)
+|+++|++.. ..|+.- ...+..+. ..++| ++.|++..|.. +.. .+..+.+.+. + +.++|.
T Consensus 78 ~v~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~p-~iiv~nK~Dl~-~~~~v~~~~~~~~~~~----~--~~~~~~ 142 (162)
T cd04106 78 CILVFSTTDR------ESFEAI-ESWKEKVEAECGDIP-MVLVQTKIDLL-DQAVITNEEAEALAKR----L--QLPLFR 142 (162)
T ss_pred EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEEChhcc-cccCCCHHHHHHHHHH----c--CCeEEE
Confidence 9999998742 223221 12222222 24777 56677887751 111 1111112211 1 346777
Q ss_pred eCCH--HHHHHHHHHHhh
Q 004554 223 ADTK--DELHKFLWLFKE 238 (745)
Q Consensus 223 l~~~--~e~~nL~R~I~~ 238 (745)
.|.. ..+..|...|+.
T Consensus 143 ~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 143 TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 7742 345666666654
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=91.76 E-value=2.5 Score=40.39 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=59.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADlVll 150 (745)
|+|+|+++++.. +| ++.+....... -..++..+...-++.++..+. ..+..+.. ..+-||.+++
T Consensus 3 i~v~G~~~~GKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 3 LVVLGSGGVGKS-AL----TIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 789999998765 56 33333222111 122333444456788888763 34556554 5788999999
Q ss_pred EeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~---eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
++|++.. ..|+. +-..+++.+..+..| ++.|.++.|.
T Consensus 78 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl 117 (164)
T smart00173 78 VYSITDR------QSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDL 117 (164)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 9998852 22433 333444444444555 5566788775
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=91.73 E-value=3 Score=40.56 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=59.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceEEEEe
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVA 152 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~g~--~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlVllli 152 (745)
|+++|+++++.. +| +..+..... +.|. .++.. .+.++.++.++-. ....+. ...+-||.+++|+
T Consensus 2 vvlvG~~~~GKT-sl----~~~l~~~~~~~~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 74 (169)
T cd04158 2 VVTLGLDGAGKT-TI----LFKLKQDEFMQPIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV 74 (169)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCcCCcCceeEEEEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence 679999988775 56 444432211 1122 22222 2467888888732 233333 4568899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 153 SASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 153 das~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
|++.. ..|+..-..+..+++..++ +.++.|.+..|.
T Consensus 75 D~s~~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 112 (169)
T cd04158 75 DSSHR------DRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112 (169)
T ss_pred eCCcH------HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence 99842 3466655556666655454 346667888875
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.1 Score=39.60 Aligned_cols=106 Identities=8% Similarity=0.041 Sum_probs=58.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccC--CCCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-hHHhhcceEEEEee
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSE--GTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS 153 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~--~~~~g---~~tv~~~r~k~R~tfie~~~-~dl~~mL-D~aKvADlVlllid 153 (745)
=|+|+|.++.+.. +|++.++...... ..+.+ ...+.+.....++.++..|. .++..+. ...+-||.+++|+|
T Consensus 4 ki~i~G~~~~GKt-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 4 KLVVVGGGGVGKS-ALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred EEEEECCCCCcHH-HHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 4789999987765 5522223321110 11111 11222333345788888863 3566666 44788999999999
Q ss_pred CCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~---e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
++.. ..|+..-. ++++.....++| ++.|++..|.
T Consensus 83 ~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl 119 (164)
T cd04145 83 VTDR------GSFEEVDKFHTQILRVKDRDEFP-MILVGNKADL 119 (164)
T ss_pred CCCH------HHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccc
Confidence 9853 23443322 333332234566 4556788775
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.3 Score=41.50 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=74.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-CCcceEEEecCceeeEEEEeCCC------CChHHHHhHHhhcceEEEEee
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-GALSSTVSSSKYRLRTSVLQAPH------GDLVGCMEMAKVADLVAFVAS 153 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~~g~~tv~~~r~k~R~tfie~~~------~dl~~mLD~aKvADlVlllid 153 (745)
-|+++|.++.+.. +| +..+++... .....++..... .++-+|- .-...|+.+++-||++|+++|
T Consensus 3 ~i~~iG~~~~GKs-tl----~~~l~~~~~~~~~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKT-TL----FNALQGNYTLARKTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHH-HH----HHHHcCCCccCccceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 4899999988765 56 333433221 112222222211 1366652 235567888999999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHH
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHK 231 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Klf~l~~--~~e~~n 231 (745)
++.+ ..+. ...++.. ..+.| ++++++..|.........++.+++. .....+|.+|. ...+..
T Consensus 74 ~~~~------~s~~--~~~~~~~--~~~~~-ii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 74 ANDP------ESRL--PAGLLDI--GVSKR-QIAVISKTDMPDADVAATRKLLLET-----GFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred CCCc------cccc--CHHHHhc--cCCCC-eEEEEEccccCcccHHHHHHHHHHc-----CCCCCEEEEECCCccCHHH
Confidence 9854 1121 1223322 13455 6788888885112222233333321 11257888874 444666
Q ss_pred HHHHHhhccccCC
Q 004554 232 FLWLFKEQRLTVP 244 (745)
Q Consensus 232 L~R~I~~~k~r~l 244 (745)
|...|+......+
T Consensus 138 l~~~l~~~~~~~~ 150 (158)
T PRK15467 138 LVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHhchhhh
Confidence 7666665554433
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.6 Score=46.97 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=59.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCC-----------h
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGD-----------L 135 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~------g~~t--v~~~r~k~R~tfie~~~~d-----------l 135 (745)
+.| .|+++|.++.+.. +| ++.|++.+.. . .+++ +..+. ...++|+..+ .- +
T Consensus 188 ~~~-~ValvG~~NvGKS-SL----ln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~-G~~~~l~~~lie~f 259 (351)
T TIGR03156 188 DVP-TVALVGYTNAGKS-TL----FNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTV-GFIRDLPHELVAAF 259 (351)
T ss_pred CCc-EEEEECCCCCCHH-HH----HHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecC-cccccCCHHHHHHH
Confidence 444 5889999987775 67 5555544311 1 2222 22221 2367776554 22 3
Q ss_pred HHHHhHHhhcceEEEEeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 136 ~~mLD~aKvADlVlllidas~g~~~~~~~~fd~--eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+++..++-||+||+|+|++.. ..++. ...++|..+...+.| ++.|++..|.
T Consensus 260 ~~tle~~~~ADlil~VvD~s~~------~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl 313 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASDP------DREEQIEAVEKVLEELGAEDIP-QLLVYNKIDL 313 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCCC------chHHHHHHHHHHHHHhccCCCC-EEEEEEeecC
Confidence 4567778889999999999852 11111 112444444433444 6778898885
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.91 Score=54.02 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=63.7
Q ss_pred eeEEEEeCCC-----CC-hH-HHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 004554 123 LRTSVLQAPH-----GD-LV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT 194 (745)
Q Consensus 123 ~R~tfie~~~-----~d-l~-~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl-P~vigvl~~L~~ 194 (745)
..+.|+--|- +. ++ .|.++.+=||+||||+|+.. ++...-.++++.|+..|- ..++.|++.+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~--------~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ--------LKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC--------CCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 4566665432 12 33 48899999999999999984 355556789999998884 248888999986
Q ss_pred chhh-----hHHHHHHHHhhcccccCCCCeeEEeCC
Q 004554 195 DLKK-----RKDLKKMCISSLTSEFPEDCKFYAADT 225 (745)
Q Consensus 195 ~~Kk-----~~~~kK~lk~~f~~e~~~~~Klf~l~~ 225 (745)
.+ ...+++.++..+..+...-+++|++|.
T Consensus 302 --~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSA 335 (741)
T PRK09866 302 --QDRNSDDADQVRALISGTLMKGCITPQQIFPVSS 335 (741)
T ss_pred --CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 32 233455554444444445789999995
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=91.41 E-value=4.1 Score=40.30 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=57.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCChHH--HHhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGDLVG--CMEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~dl~~--mLD~aKvADlVl 149 (745)
|+|+|.++.+.. +| +..|....... | ..++..+...-++.|+.++...-.. ....++=||.+|
T Consensus 3 i~v~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 3 VVIIGDYGVGKS-SL----LKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 789999988775 56 44443322211 2 2233444434567888876322222 234566799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qG--lP~vigvl~~L~~ 194 (745)
||+|.+.. ..|+.- ..+|..++... -+.++.|.++.|.
T Consensus 78 lv~d~~~~------~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 78 LVYDVTDQ------ESFENL-KFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 99999853 334432 22444444321 2346778888885
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.2 Score=40.58 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=55.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceE--EEecCceeeEEEEeCCCC-C----------hHHHH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSST--VSSSKYRLRTSVLQAPHG-D----------LVGCM 139 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~t--v~~~r~k~R~tfie~~~~-d----------l~~mL 139 (745)
|+|+|.++++.. +| ++.+++.+... .+.. +... ...+.|+-.|.- + +...+
T Consensus 2 V~iiG~~~~GKS-Tl----in~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~ 74 (116)
T PF01926_consen 2 VAIIGRPNVGKS-TL----INALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKFL 74 (116)
T ss_dssp EEEEESTTSSHH-HH----HHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HH----HHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHHH
Confidence 789999997765 66 44443322111 2211 1122 367788888731 1 23467
Q ss_pred hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEE
Q 004554 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAV 187 (745)
Q Consensus 140 D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vig 187 (745)
....-||++++++|++. .....-.++++.|+ ++-|-++.
T Consensus 75 ~~~~~~d~ii~vv~~~~--------~~~~~~~~~~~~l~-~~~~~i~v 113 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASN--------PITEDDKNILRELK-NKKPIILV 113 (116)
T ss_dssp HHHCTESEEEEEEETTS--------HSHHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHHHCCEEEEEEECCC--------CCCHHHHHHHHHHh-cCCCEEEE
Confidence 77788999999999873 24455668888887 66665543
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=91.30 E-value=9.4 Score=36.71 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=58.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlVl 149 (745)
|+|+|.++.+.. +| +..|....... + ...+........+.++.++.. ...++.. .++-||.+|
T Consensus 3 i~vvG~~~vGKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (161)
T cd04124 3 IILLGDSAVGKS-KL----VERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence 789999998775 66 44443222111 1 112233444567788887632 2445544 478899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
+|+|++.. ..|+. -.+.+..++.. ++ .++.|++..|.
T Consensus 78 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~-p~ivv~nK~Dl 116 (161)
T cd04124 78 LVFDVTRK------ITYKN-LSKWYEELREYRPEI-PCIVVANKIDL 116 (161)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCC-cEEEEEECccC
Confidence 99999853 23433 23556666544 44 45677888885
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=91.30 E-value=3.1 Score=39.83 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=58.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADlV 148 (745)
=|+|+|.++++.. +| +.+|....... | ..++..+...-++.++..+. ..+..+.. .++-||.+
T Consensus 5 ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01868 5 KIVLIGDSGVGKS-NL----LSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA 79 (165)
T ss_pred EEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEE
Confidence 3789999998876 66 55554333211 2 23344454456788888763 12344443 34779999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
|+|+|++.. ..|+. -.+.|..++.+.. +.++.|.++.|.
T Consensus 80 i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 80 LLVYDITKK------QTFEN-VERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 999999842 22332 2234444443321 236677888885
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=91.28 E-value=4.3 Score=40.88 Aligned_cols=103 Identities=10% Similarity=-0.001 Sum_probs=58.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC------CC----cceEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcce
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT------GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADL 147 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~------~~----g~~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADl 147 (745)
+=|+|+|+++.+.. +| +..|..... +. ...++..+..+.++.++.++... +..+ --.++-||.
T Consensus 7 ~kivvvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 7 FKLLIIGDSGVGKS-SL----LLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 44889999988775 56 444432211 11 23344445556788899887322 2222 224566999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHHhc-CCCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GLPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~~q-GlP~vigvl~~L~~ 194 (745)
+|+|+|++.. ..|+.- ...|+.++.+ +-..++.|.+..|.
T Consensus 82 iilv~D~~~~------~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 82 VIVVYDVTNG------ESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCEEEEEECccc
Confidence 9999999842 224322 2344444443 33445666787775
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=91.03 E-value=4.7 Score=39.76 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=59.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCCC--hHHH-HhHHhhcceE
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLV 148 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~g~--~tv~~~r~k~R~tfie~~~~d--l~~m-LD~aKvADlV 148 (745)
+.-|+|+|+++++.. +| ++.++.... +.++ ..+..+ ..++.++..+ .. ...+ ....+-||.+
T Consensus 19 ~~ki~ilG~~~~GKS-tL----i~~l~~~~~~~~~~T~~~~~~~i~~~--~~~~~l~D~~-G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 19 EAKILFLGLDNAGKT-TL----LHMLKDDRLAQHVPTLHPTSEELTIG--NIKFKTFDLG-GHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhccCCEE
Confidence 455699999998775 56 444443211 1122 233333 2577788876 33 2232 4456889999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
++++|++.. ..|+..-..+..+++.... ..++.|++..|.
T Consensus 91 ilV~D~~~~------~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 91 VFLVDAADP------ERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred EEEEECCcH------HHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 999999842 2354444455555553332 235667888875
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=90.95 E-value=3.5 Score=38.85 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=54.4
Q ss_pred EEEecCCCccChhhHHHHHHHhh-ccCCCCC-----cceEEEecCceeeEEEEeCCCCC-hHHHHhH-HhhcceEEEEee
Q 004554 82 IVLFGLSASVNLNSVREDLLRQL-SSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVAS 153 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~-~~~~~~~-----g~~tv~~~r~k~R~tfie~~~~d-l~~mLD~-aKvADlVlllid 153 (745)
|+|+|+++++.. +|++.++... ....... ...++.....+.++.++.++... ...+... .+-||.+|+|+|
T Consensus 3 i~i~G~~~~GKS-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 3 VVLLGEGRVGKT-SLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence 789999987765 5622223221 1111111 11223333445678899987322 3344333 466999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHh-c--CCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVFRS-L--GLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l~~-q--GlP~vigvl~~L~~ 194 (745)
.+.+ ..|+... .++..++. . ++ .++.|+++.|.
T Consensus 82 ~~~~------~s~~~~~-~~~~~i~~~~~~~~-piiiv~nK~D~ 117 (162)
T cd04123 82 ITDA------DSFQKVK-KWIKELKQMRGNNI-SLVIVGNKIDL 117 (162)
T ss_pred CCCH------HHHHHHH-HHHHHHHHhCCCCC-eEEEEEECccc
Confidence 8853 2233222 22223222 2 33 36667888885
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=90.74 E-value=2.1 Score=48.63 Aligned_cols=98 Identities=9% Similarity=0.133 Sum_probs=62.4
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CC----h----H-HHH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GD----L----V-GCM 139 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g~------~tv~~~r~k~R~tfie~~~-~d----l----~-~mL 139 (745)
.|+|+|.++.+.. +| +..+.+... .. |. ..+.... ..+.++.+|- .+ + . ..+
T Consensus 3 ~I~ivG~~~vGKS-tL----~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 75 (435)
T PRK00093 3 VVAIVGRPNVGKS-TL----FNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAE 75 (435)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHH
Confidence 5888999987664 56 444433221 11 11 1122222 5788888863 22 1 1 134
Q ss_pred hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 140 D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+..-||+||+|+|++.+ +.....++...|+..|.| ++.|++..|.
T Consensus 76 ~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~ 121 (435)
T PRK00093 76 LAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDG 121 (435)
T ss_pred HHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 567889999999999954 666667788888888887 5567888885
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=90.68 E-value=4.1 Score=39.33 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=59.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCCC-hHHHHhH-HhhcceEEEEe
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVA 152 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~g~--~tv~~~r~k~R~tfie~~~~d-l~~mLD~-aKvADlVllli 152 (745)
|+++|.++++.. +| +..|..... +.|. .++... ...+.++.++-.+ +..+... .+-||.+|||+
T Consensus 3 v~~~G~~~~GKT-sl----i~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 3 ILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 788999988775 56 443321111 1121 122322 3567788876322 4455444 68899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 153 SASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 153 das~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
|++.- ..|+..-.++.+.+....+ +.++.|.+..|.
T Consensus 76 D~~~~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 76 DSNDR------ERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred eCCCH------HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 99842 3466665666666655443 456667888885
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=6.6 Score=39.23 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=75.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceEEEecCc-eeeEEEEeCCCC--C-----------hHH----
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSSTVSSSKY-RLRTSVLQAPHG--D-----------LVG---- 137 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---g~~tv~~~r~-k~R~tfie~~~~--d-----------l~~---- 137 (745)
..-|+|+|.++.+.. +| ++.|+...... ..+|.....+ -..++++..| + . +..
T Consensus 9 ~~~i~i~G~~~~GKS-sL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKS-TL----VRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLP-GFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCceeeCceEEeecceEEEeCC-ccccccccCHHHHHHHHHHHHH
Confidence 456899999988775 56 55554332211 1112211101 1257788776 3 1 111
Q ss_pred HH-hHHhhcceEEEEeeCCCcccccccccc-----ChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcc
Q 004554 138 CM-EMAKVADLVAFVASASSFSEESMSYYI-----DSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLT 211 (745)
Q Consensus 138 mL-D~aKvADlVlllidas~g~~~~~~~~f-----d~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~ 211 (745)
.+ ..+..+|+|++|+|++....- ...+ -....+++..++..|+|- +.|++..|.. .+..+....+...+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~p~-iiv~NK~Dl~-~~~~~~~~~~~~~~~ 158 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELGIPP-IVAVNKMDKI-KNRDEVLDEIAERLG 158 (201)
T ss_pred HHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcCCCe-EEEEECcccc-CcHHHHHHHHHHHhc
Confidence 12 356778999999999742000 0001 012467788888889885 6688888851 111222333333332
Q ss_pred cc-cC--CCCeeEEeCCHH-HHHHHHHHHhh
Q 004554 212 SE-FP--EDCKFYAADTKD-ELHKFLWLFKE 238 (745)
Q Consensus 212 ~e-~~--~~~Klf~l~~~~-e~~nL~R~I~~ 238 (745)
.. .+ -+..+|.+|..+ -+..|...|..
T Consensus 159 ~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~ 189 (201)
T PRK04213 159 LYPPWRQWQDIIAPISAKKGGIEELKEAIRK 189 (201)
T ss_pred CCccccccCCcEEEEecccCCHHHHHHHHHH
Confidence 10 00 023577777332 44455555543
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=90.62 E-value=3.4 Score=39.69 Aligned_cols=101 Identities=9% Similarity=0.050 Sum_probs=57.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hHHHH-hHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~d-l~~mL-D~aKvADlV 148 (745)
=|+|+|+++.+.. +| +.++....... | ..++..++.+.++.++.++... +..+. ..++-||.+
T Consensus 4 ki~i~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 78 (166)
T cd01869 4 KLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 78 (166)
T ss_pred EEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence 3789999988775 56 44443222111 2 1223334445678889887322 33332 456779999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
|+++|++.. ..|+.- .+++..++. .++| ++.|.++.|.
T Consensus 79 i~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 79 IIVYDVTDQ------ESFNNV-KQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEECcCH------HHHHhH-HHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 999999842 223322 234444443 3555 4556777774
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=90.61 E-value=2.1 Score=41.18 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=60.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHhHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~------~~~g----~~tv~~~r~k~R~tfie~~~~d-l~~-mLD~aKvADlV 148 (745)
=|+|+|.++++.. +| +..|.... .+.| ..++..+..+-+++++.+|... +.. ....++-||.+
T Consensus 5 kv~vvG~~~~GKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 5 KIILIGDSNVGKT-CV----VQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred EEEEECCCCCCHH-HH----HHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 4788999988775 56 33332211 1112 2334445444688899987322 333 23456779999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP--~vigvl~~L~~ 194 (745)
|+++|++.. ..|+. -...|..++.++-+ .++.|.+..|.
T Consensus 80 llv~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 80 IIAYDITRR------SSFES-VPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred EEEEECcCH------HHHHh-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 999999853 23432 34566666665432 25667888885
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.7 Score=53.11 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=52.0
Q ss_pred eeeEEEEeCCC-CCh-HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 122 k~R~tfie~~~-~dl-~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+.++.|+-||- .++ ..+..+...||.+|||+|+..| +..++.++++.+...|+|.+ .|++.+|.
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 56889999872 333 4678889999999999999854 77789999999999999975 67787774
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=90.53 E-value=4 Score=38.64 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=58.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC-C-----cc---eEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-A-----LS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-~-----g~---~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlVl 149 (745)
-|+++|+++.+.. +| ++.++..... . +. ..+.....+.++.++..+.. +...+. .+.+.+|.++
T Consensus 2 ki~~~G~~~~GKT-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (164)
T cd04139 2 KVIVVGAGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL 76 (164)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence 3789999987765 56 4444322111 1 11 12233434567888877632 333333 3668889999
Q ss_pred EEeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd---~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+++|.+.. ..|+ .+...++.+...+++| ++.|++..|.
T Consensus 77 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 77 LVFSITDM------ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 99998742 2243 4444555444446777 5666787775
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.3 Score=40.08 Aligned_cols=74 Identities=18% Similarity=0.050 Sum_probs=39.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhcc-CC--CCC-----cceEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcceEEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSS-EG--TGA-----LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAFV 151 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~-~~--~~~-----g~~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADlVlll 151 (745)
|+|+|.++++.. +|++.|+..... .. ... +..+.....-.+.+.|.+++..+ .... -.+.+-||.+|||
T Consensus 2 I~V~G~~g~GKT-sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 2 IVVLGDSGVGKT-SLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEECSTTSSHH-HHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred EEEECcCCCCHH-HHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 789999987765 562222322211 00 011 11122333334568889987322 1111 1237889999999
Q ss_pred eeCCC
Q 004554 152 ASASS 156 (745)
Q Consensus 152 idas~ 156 (745)
+|.+.
T Consensus 81 ~D~s~ 85 (119)
T PF08477_consen 81 YDLSD 85 (119)
T ss_dssp EECCG
T ss_pred EcCCC
Confidence 99984
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=90.43 E-value=4.6 Score=40.92 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=69.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCC------ChHH----HHhH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHG------DLVG----CMEM 141 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~------dl~~----mLD~ 141 (745)
|+|+|.++.+.. +| +..|....... + ..++.....+.+++++.++.- .... ...+
T Consensus 3 I~ivG~~~vGKT-sL----i~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 3 VAVLGAPGVGKT-AI----VRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred EEEECCCCCcHH-HH----HHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 789999988775 56 44443222111 1 113334444567888887520 1111 1223
Q ss_pred HhhcceEEEEeeCCCccccccccccCh---HHHHHHHHHH--hcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDS---FGNQCLSVFR--SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE 216 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~---eg~e~L~~l~--~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~ 216 (745)
.+-||.+|||+|++.. ..|+. +-.++++... ..++| ++.|.+..|.. ..+...+..++.......
T Consensus 78 ~~~ad~iilv~D~~~~------~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~-~~~~~~~~~~~~~~~~~~-- 147 (198)
T cd04142 78 LRNSRAFILVYDICSP------DSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQ-RHRFAPRHVLSVLVRKSW-- 147 (198)
T ss_pred hccCCEEEEEEECCCH------HHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECcccc-ccccccHHHHHHHHHHhc--
Confidence 5789999999999853 22432 2223333321 24444 45567777751 111111222222211111
Q ss_pred CCeeEEeCC--HHHHHHHHHHHh
Q 004554 217 DCKFYAADT--KDELHKFLWLFK 237 (745)
Q Consensus 217 ~~Klf~l~~--~~e~~nL~R~I~ 237 (745)
+..+|..|. ...+.+|...|.
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHH
Confidence 456777773 334555555544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=90.13 E-value=4.1 Score=39.37 Aligned_cols=101 Identities=8% Similarity=0.071 Sum_probs=58.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-----C----cceEEEecCceeeEEEEeCCCCC-hHHHHh-HHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A----LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~----g~~tv~~~r~k~R~tfie~~~~d-l~~mLD-~aKvADlVll 150 (745)
|+|+|+++.+.. +| +..|...... . ...++..+..+-+++++.++..+ ...+-+ ..+-||.+|+
T Consensus 3 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 3 CVVVGDGAVGKT-CL----LMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 789999998775 56 4444332211 1 12344555555668889887332 222222 2456899999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
++|.+.. ..|+.-...++..+... +.| ++.|.++.|.
T Consensus 78 v~~~~~~------~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl 116 (174)
T cd04135 78 CFSVVNP------ASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDL 116 (174)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhh
Confidence 9998742 34554444455555543 443 3556788774
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=90.06 E-value=4.3 Score=38.88 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=60.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-----CC----cceEEEecCceeeEEEEeCCCCC-hHHHHh-HHhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~----g~~tv~~~r~k~R~tfie~~~~d-l~~mLD-~aKvADlVl 149 (745)
-|+|+|.++++.. +| ++.|+.... .. -..++..+.....++|+.+|... ...+.. ..+-||.++
T Consensus 2 ki~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i 76 (171)
T cd00157 2 KIVVVGDGAVGKT-CL----LISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL 76 (171)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence 3789999988775 66 454543332 11 12233334445678899887322 112211 236699999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGl-P~vigvl~~L~~ 194 (745)
+++|++.. ..|+....+++..+..... ..++.|+++.|.
T Consensus 77 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 77 ICFSVDSP------SSFENVKTKWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHh
Confidence 99998842 3355555566776665542 345666787774
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.4 Score=42.16 Aligned_cols=100 Identities=9% Similarity=0.136 Sum_probs=58.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC-----Ccce--EEEecCceeeEEEEeCCCCC--hHHH-HhHHhhcceEE
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVA 149 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~g~~--tv~~~r~k~R~tfie~~~~d--l~~m-LD~aKvADlVl 149 (745)
.-|+++|+++.+.. +| ++.+...... .++. ++... +.++.++.++ .. ...+ -...+-||.+|
T Consensus 18 ~~i~ivG~~~~GKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 18 AKILFLGLDNAGKT-TL----LHMLKNDRLAQHQPTQHPTSEELAIG--NIKFTTFDLG-GHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccccceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhCCCCEEE
Confidence 55789999998775 56 5555432211 1322 23333 3577888887 32 2232 23467899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~---~qGlP~vigvl~~L~~ 194 (745)
+|+|++.. ..|.....++..+++ ..|.| ++.|+++.|.
T Consensus 90 ~vvD~~~~------~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 130 (184)
T smart00178 90 YLVDAYDK------ERFAESKRELDALLSDEELATVP-FLILGNKIDA 130 (184)
T ss_pred EEEECCcH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence 99999842 224433334444443 35665 6777888774
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.5 Score=54.47 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=51.1
Q ss_pred eeeEEEEeCCC-CC-hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (745)
Q Consensus 122 k~R~tfie~~~-~d-l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~ 193 (745)
..+++||-||- .| +..++-++.+||.+|+|+||.. ++...|..+|+.+..+|+|.++.| +.+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~--------Gv~~~t~~~~~~~~~~~~p~i~~i-NK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--------GVCVQTETVLRQALGERIRPVLTV-NKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC--------CCcccHHHHHHHHHHCCCCEEEEE-ECCc
Confidence 46789999982 24 4567888899999999999995 478889999999999999997655 4444
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=89.75 E-value=6 Score=39.74 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=76.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhc-cCCCCCcceEEEecC-----ceeeEEEEeCCC-CCh-------H-HHHhHHhh-
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLS-SEGTGALSSTVSSSK-----YRLRTSVLQAPH-GDL-------V-GCMEMAKV- 144 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~-~~~~~~g~~tv~~~r-----~k~R~tfie~~~-~dl-------~-~mLD~aKv- 144 (745)
-|+++|.++++.. ++.+.|+..-. .......+.|..+.. ..+++++|..|- .+. . .|..++.-
T Consensus 2 ~i~lvG~~g~GKS-sl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKS-ATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHH-HHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 3789999887764 55333332110 000000112211110 136899998873 122 1 23333332
Q ss_pred ---cceEEEEeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCc-chhh--------hHHHHHHHHh
Q 004554 145 ---ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPT-DLKK--------RKDLKKMCIS 208 (745)
Q Consensus 145 ---ADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~q-G---lP~vigvl~~L~~-~~Kk--------~~~~kK~lk~ 208 (745)
+|+||||+++.. |..+-.++|..|+.. | +..+|.|+|+-|. .... ....++.+++
T Consensus 81 ~~g~~~illVi~~~~---------~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 81 APGPHAFLLVVPLGR---------FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK 151 (196)
T ss_pred CCCCEEEEEEEECCC---------cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence 699999999872 555566677777654 3 5678888998773 1011 1123333332
Q ss_pred h--cccccCCCCeeEEeCCHHHHHHHHHHHhhcccc
Q 004554 209 S--LTSEFPEDCKFYAADTKDELHKFLWLFKEQRLT 242 (745)
Q Consensus 209 ~--f~~e~~~~~Klf~l~~~~e~~nL~R~I~~~k~r 242 (745)
. -.+.|...++ .-+....+..|+..|-.+-..
T Consensus 152 c~~r~~~f~~~~~--~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGGRYVAFNNKAK--GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCCeEEEEeCCCC--cchhHHHHHHHHHHHHHHHHh
Confidence 1 0112222222 223456788888888877654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=5.1 Score=45.89 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=60.5
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cce--EEEecCceeeEEEEeCCC--CC--------h
Q 004554 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSS--TVSSSKYRLRTSVLQAPH--GD--------L 135 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~------g~~--tv~~~r~k~R~tfie~~~--~d--------l 135 (745)
.+.|. |+|+|.++.+.. +| ++.|+..+.. . .+. .+..+. ...+.|+-.+- .+ +
T Consensus 195 ~~~p~-ValVG~~NaGKS-SL----lN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f 267 (426)
T PRK11058 195 ADVPT-VSLVGYTNAGKS-TL----FNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAF 267 (426)
T ss_pred cCCCE-EEEECCCCCCHH-HH----HHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHH
Confidence 35565 789999998875 67 5555443311 1 122 122222 12455555431 11 4
Q ss_pred HHHHhHHhhcceEEEEeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 136 ~~mLD~aKvADlVlllidas~g~~~~~~~~fd~--eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+++..++-||++|+|+|++.. ..++. ....+|..+...+.| ++.|++..|.
T Consensus 268 ~~tl~~~~~ADlIL~VvDaS~~------~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 268 KATLQETRQATLLLHVVDAADV------RVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred HHHHHHhhcCCEEEEEEeCCCc------cHHHHHHHHHHHHHHhccCCCC-EEEEEEcccC
Confidence 5567778889999999999852 11121 123556666555655 5678898885
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.4 Score=38.44 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=58.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-----C-----cceEEEecCceeeEEEEeCCCCC-hHHHH-hHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-----LSSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~-----g~~tv~~~r~k~R~tfie~~~~d-l~~mL-D~aKvADlVl 149 (745)
|+|+|.++.+.. +| +..|+..... . +...+.......++.|+.++-.+ ...+. ...+-||.+|
T Consensus 3 i~~vG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (168)
T cd04119 3 VISMGNSGVGKS-CI----IKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL 77 (168)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence 789999998776 66 4444332211 1 23344444556788899887322 33333 2457799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcC-------CCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG-------LPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qG-------lP~vigvl~~L~~ 194 (745)
+|+|.+.. ..|+. -.+.+..++... -+.++.|.+..|.
T Consensus 78 lv~D~~~~------~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 78 LVYDVTDR------QSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EEEECCCH------HHHHh-HHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 99999842 22432 223444443332 1456777887774
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=89.49 E-value=6.5 Score=37.31 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=58.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceEEEEe
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g--~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlVllli 152 (745)
|+|+|.++++.. +| +..++...... | ..++... ...+.++.+|-. ...++.. +.+-||.+|+|+
T Consensus 2 i~iiG~~~~GKs-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 2 ILILGLDGAGKT-TI----LYKLKLGEVVTTIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCCCCCCCCcCcceEEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 689999988775 56 44443322211 2 2222222 357888887731 2334444 447899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 153 das~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
|++.+ ..|+..-..+..+++. .+.| ++.|+++.|.
T Consensus 75 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 75 DSSDR------ERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred ECCCH------HHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 99853 2355544555555553 3443 4556888885
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=89.40 E-value=5.5 Score=35.95 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=39.8
Q ss_pred ceeeEEEEeCCCCC--hHHHHhHHhhcceEEEEeeCCCccccccccccChHHHH---HHHHHHhcCCCceEEEeccCCc
Q 004554 121 YRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQ---CLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 121 ~k~R~tfie~~~~d--l~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e---~L~~l~~qGlP~vigvl~~L~~ 194 (745)
....++++.++..+ ........+-+|.+++++|++.+ ..++..... .+......+.| ++.|+++.|.
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~ 114 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR------ESFENVKEWLLLILINKEGENIP-IILVGNKIDL 114 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH------HHHHHHHHHHHHHHHhhccCCCc-EEEEEecccc
Confidence 35778899987211 11223467889999999999953 222222222 33444445544 5667788775
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.6 Score=41.27 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=56.0
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC-C------cc----eEEEecCceeeEEEEeCCCCC-hHHHHh-HHhhcc
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG-A------LS----STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVAD 146 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-~------g~----~tv~~~r~k~R~tfie~~~~d-l~~mLD-~aKvAD 146 (745)
+=|+|+|.++.+.. +| +.+|...... . +. .++........+.+..+.... ...+-. ..+-||
T Consensus 5 ~kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 5 FLCFVLGAKGSGKS-AL----LRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred EEEEEECCCCCcHH-HH----HHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 34889999988775 56 5555433222 1 21 234444444566666665221 222222 247799
Q ss_pred eEEEEeeCCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCc
Q 004554 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPT 194 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd~eg~e~L~~l~~-qGlP~vigvl~~L~~ 194 (745)
++|||+|++.. ..|+. -.+++..++. .++| ++.|++..|.
T Consensus 80 ~~llv~d~~~~------~s~~~-~~~~~~~~~~~~~~p-~iiv~NK~Dl 120 (169)
T cd01892 80 VACLVYDSSDP------KSFSY-CAEVYKKYFMLGEIP-CLFVAAKADL 120 (169)
T ss_pred EEEEEEeCCCH------HHHHH-HHHHHHHhccCCCCe-EEEEEEcccc
Confidence 99999999742 22322 1244443322 2444 6778888885
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=6.3 Score=39.16 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=62.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcc--eEEEecCceeeEEEEeCCCC-ChHHHHhH-HhhcceEEE
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALS--STVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVAF 150 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-----~~~g~--~tv~~~r~k~R~tfie~~~~-dl~~mLD~-aKvADlVll 150 (745)
+=|+++|+++.+.. +| +..+.... .+.|. .++... +-.++++.++-. .+..+.+. .+-||.+|+
T Consensus 18 ~kv~lvG~~~vGKT-sl----i~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 18 VRILMVGLDAAGKT-TI----LYKLKLGEVVTTIPTIGFNVETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred cEEEEEcCCCCCHH-HH----HHHHhcCCccccCCccccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 44889999998775 56 44332111 11121 112222 356788888732 25555443 688999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
|+|++.- ..|+..-.++.+.+..+-+ +.++.|.++.|.
T Consensus 91 v~D~t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 91 VVDSNDR------ERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred EEeCCCH------HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 9999742 3466666677777766433 456777888885
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=88.76 E-value=8 Score=37.29 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=60.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----Ccce--EEEecCceeeEEEEeCCCCC--hHHH-HhHHhhcce
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADL 147 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-----~g~~--tv~~~r~k~R~tfie~~~~d--l~~m-LD~aKvADl 147 (745)
.++-|+|+|+++++.. +| ++.+++.... .|.. .+... ...+.++.++ .. +..+ ....+-||.
T Consensus 13 ~~~~v~i~G~~g~GKS-tL----l~~l~~~~~~~~~~t~g~~~~~i~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 13 EEPRILILGLDNAGKT-TI----LKQLASEDISHITPTQGFNIKTVQSD--GFKLNVWDIG-GQRAIRPYWRNYFENTDC 84 (173)
T ss_pred CccEEEEEccCCCCHH-HH----HHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhcCCCE
Confidence 3667999999998875 66 5555443221 1311 22222 2567888876 33 3333 344577999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~---~qGlP~vigvl~~L~~ 194 (745)
+++++|++.. ..|+.....+...++ ..++| ++.|++..|.
T Consensus 85 ii~v~D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 127 (173)
T cd04155 85 LIYVIDSADK------KRLEEAGAELVELLEEEKLAGVP-VLVFANKQDL 127 (173)
T ss_pred EEEEEeCCCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCC
Confidence 9999999842 234443444444433 34555 6667787775
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.9 Score=40.50 Aligned_cols=103 Identities=8% Similarity=0.030 Sum_probs=56.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEe-cCceeeEEEEeCCCCC-hHHHH-hHHhhcce
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSS-SKYRLRTSVLQAPHGD-LVGCM-EMAKVADL 147 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g~----~tv~~-~r~k~R~tfie~~~~d-l~~mL-D~aKvADl 147 (745)
=|+|+|.++.+.. +| +..|....... |. .++.+ +....++.++.++... ...+. ...+-||.
T Consensus 4 KIvvvG~~~vGKT-sL----i~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (211)
T cd04111 4 RLIVIGDSTVGKS-SL----LKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVG 78 (211)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcE
Confidence 3789999988765 56 44444332211 21 12222 2334578888876322 33332 45678999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~~qG--lP~vigvl~~L~~ 194 (745)
+|+|+|.+.. ..|+.-...+-.+++..+ -+.++.|.++.|.
T Consensus 79 iilv~D~~~~------~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 79 VLLVFDITNR------ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 9999998842 335543332223333322 2334556777775
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=88.59 E-value=11 Score=36.43 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=56.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-CC-----cceEE--EecCceeeEEEEeCCCCC-h-HHHHhHHhhcceEEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-GA-----LSSTV--SSSKYRLRTSVLQAPHGD-L-VGCMEMAKVADLVAFV 151 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~~-----g~~tv--~~~r~k~R~tfie~~~~d-l-~~mLD~aKvADlVlll 151 (745)
|+|+|.++.+.. +| +..|..... .. ..+++ .....+.++.++-++-.. . ..+....+-||++||+
T Consensus 3 v~ivG~~~vGKT-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 3 IVLIGDEGVGKS-SL----IMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 678899887765 56 443322221 11 22232 222245677788775221 2 2345556889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 004554 152 ASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (745)
Q Consensus 152 idas~g~~~~~~~~fd~eg~e~L~~l~~qG-lP~vigvl~~L~~ 194 (745)
+|++.. ..|+.--...+..++.++ -..++.|+++.|.
T Consensus 78 ~d~~~~------~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 78 YSVDRP------STLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred EECCCH------HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 998843 335542223344444332 1346667888774
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=88.52 E-value=5.6 Score=40.67 Aligned_cols=101 Identities=11% Similarity=0.147 Sum_probs=58.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCC-CChHHHH-hHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~------~~g----~~tv~~~r~k~R~tfie~~~-~dl~~mL-D~aKvADlV 148 (745)
-|+|+|.++.+.. +| +.+|..... +.| ..++..+..+-+++++..+- ..+.++. ...+-||.+
T Consensus 2 ~vvvlG~~gVGKT-Sl----i~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~i 76 (202)
T cd04120 2 QVIIIGSRGVGKT-SL----MRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 76 (202)
T ss_pred EEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEE
Confidence 3789999988876 56 444432221 111 22344454456777887752 2244443 346789999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~q---GlP~vigvl~~L~~ 194 (745)
|||+|.+.. ..|+.- ...+..++.. ++| ++.|.++.|.
T Consensus 77 IlVfDvtd~------~Sf~~l-~~w~~~i~~~~~~~~p-iilVgNK~DL 117 (202)
T cd04120 77 ILVYDITKK------ETFDDL-PKWMKMIDKYASEDAE-LLLVGNKLDC 117 (202)
T ss_pred EEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 999999852 335432 2344555543 444 4556787775
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=88.33 E-value=6.8 Score=39.52 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=72.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC---cc--eEEEecCc----eeeEEEEeCCC-CC----hHHHHhH
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA---LS--STVSSSKY----RLRTSVLQAPH-GD----LVGCMEM 141 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~---g~--~tv~~~r~----k~R~tfie~~~-~d----l~~mLD~ 141 (745)
|.-|+|+|.++.+.. +| ++.+++... .. |. +|.....+ ...++++..|- ++ ....+..
T Consensus 1 ~~kI~i~G~~g~GKS-SL----in~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKS-SF----INALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHH-HH----HHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHH
Confidence 556899999998775 67 444443221 11 21 12111111 13678888752 22 2333333
Q ss_pred H--hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--hh--------hhHHHHHHHHhh
Q 004554 142 A--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--LK--------KRKDLKKMCISS 209 (745)
Q Consensus 142 a--KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~--~K--------k~~~~kK~lk~~ 209 (745)
. .-+|++|++.+.. |...-..++..|+..|.| ++.|++..|.. .. ++.++...++.+
T Consensus 76 ~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 76 MKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred hCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 2 2368888886655 666667788888888754 57778877741 01 133444444544
Q ss_pred ccccc----CCCCeeEEeCCH
Q 004554 210 LTSEF----PEDCKFYAADTK 226 (745)
Q Consensus 210 f~~e~----~~~~Klf~l~~~ 226 (745)
+...+ .....+|-+|..
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~ 165 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNF 165 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCC
Confidence 44433 234577877764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=88.30 E-value=7.1 Score=38.23 Aligned_cols=101 Identities=6% Similarity=-0.034 Sum_probs=58.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlVl 149 (745)
|+|+|.++.+.. +| +.+|....... | ..++.......++.|+.++.. ....+. ..++=||++|
T Consensus 3 i~ivG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (170)
T cd04108 3 VIVVGDLSVGKT-CL----INRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAII 77 (170)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEE
Confidence 679999888775 66 44443322211 1 122333444567888888621 233332 3367799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCCC---ceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP---STAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP---~vigvl~~L~~ 194 (745)
||+|++.. ..|+.. .+.+..++.+-.| .++.|.++.|.
T Consensus 78 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 78 IVFDLTDV------ASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEECcCH------HHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 99999742 234433 3455555444444 36788888885
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=88.25 E-value=6.1 Score=40.21 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=55.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC-------cceEEEec--CceeeEEEEeCCC-CChHHH-HhHHhhc-ceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA-------LSSTVSSS--KYRLRTSVLQAPH-GDLVGC-MEMAKVA-DLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-------g~~tv~~~--r~k~R~tfie~~~-~dl~~m-LD~aKvA-DlV 148 (745)
-|+++|+++++.. +| +.+|....... ...++... ....++.++.+|- ..+..+ ....+-+ +.|
T Consensus 2 ~vll~G~~~sGKT-sL----~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~v 76 (203)
T cd04105 2 TVLLLGPSDSGKT-AL----FTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGI 76 (203)
T ss_pred eEEEEcCCCCCHH-HH----HHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEE
Confidence 3789999998876 56 44443322111 11122211 2245788898873 234443 4556677 999
Q ss_pred EEEeeCCCccccccccccCh---HHHHHHHHHHh--cCCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~---eg~e~L~~l~~--qGlP~vigvl~~L~~ 194 (745)
|+|+|++... ..+.. +=+.+|+.++. .|.| ++.|.++.|.
T Consensus 77 V~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl 121 (203)
T cd04105 77 VFVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDL 121 (203)
T ss_pred EEEEECccch-----hHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhh
Confidence 9999998520 11222 22233443333 3554 5566777664
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=88.20 E-value=16 Score=35.56 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=59.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcceEE
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g--~~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADlVl 149 (745)
+.-|+++|+++++.. +| +..+....... | ..++... ..++.++..+-.. +.++ -...+-||.++
T Consensus 14 ~~kv~ivG~~~~GKT-sL----~~~l~~~~~~~~~~t~g~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 14 EMRILILGLDNAGKT-TI----LKKLLGEDIDTISPTLGFQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred ccEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345779999998876 67 44443332221 2 1223333 3578888887322 3333 33456799999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~---~qGlP~vigvl~~L~~ 194 (745)
+|+|++.. ..|+.....+..+++ ..+ +.++.|+++.|.
T Consensus 87 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl 127 (173)
T cd04154 87 WVVDSSDR------LRLDDCKRELKELLQEERLAG-ATLLILANKQDL 127 (173)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHhChhhcC-CCEEEEEECccc
Confidence 99999853 235444434444443 245 446677888885
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.9 Score=44.54 Aligned_cols=98 Identities=9% Similarity=0.143 Sum_probs=54.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCC---------h-HHHHhH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGD---------L-VGCMEM 141 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~------g~~t--v~~~r~k~R~tfie~~~~d---------l-~~mLD~ 141 (745)
|++||+|..+.. +| +..++..... . .|+. +... ..++|+++..| .- | ...|..
T Consensus 161 VglVG~PNaGKS-TL----ln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~P-Gli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 161 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIP-GLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred EEEEcCCCCCHH-HH----HHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCC-CccCCCCccccHHHHHHHH
Confidence 899999987764 56 5555432211 1 2211 1221 13578888887 32 2 244556
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCc
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPT 194 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~q-----GlP~vigvl~~L~~ 194 (745)
+.-||++|+|+|++.. ..++.. ..+++.|+.. .. .++.|++..|.
T Consensus 234 ie~a~vlI~ViD~s~~------~s~e~~-~~~~~EL~~~~~~L~~k-p~IIV~NKiDL 283 (335)
T PRK12299 234 IERTRLLLHLVDIEAV------DPVEDY-KTIRNELEKYSPELADK-PRILVLNKIDL 283 (335)
T ss_pred hhhcCEEEEEEcCCCC------CCHHHH-HHHHHHHHHhhhhcccC-CeEEEEECccc
Confidence 6679999999999841 112211 2333444432 33 45667888885
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=87.93 E-value=6.3 Score=38.22 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=57.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hH-HHHhH-Hhhcce
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEM-AKVADL 147 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~d-l~-~mLD~-aKvADl 147 (745)
-|+|+|+++.+.. +| +..+....... + ..++..+....++.++.++..+ +. .++.. .+-||.
T Consensus 4 ki~vvG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 4 KIIVIGDSNVGKT-CL----TYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 4889999998775 56 44332222111 1 2234445555788888876322 32 34443 567999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~~q----GlP~vigvl~~L~~ 194 (745)
+++++|++.. ..|+.. ..++..+..+ ++| ++.|.+..|.
T Consensus 79 ~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 79 VVFVYDVTNM------ASFHSL-PSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred EEEEEECCCH------HHHHhH-HHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 9999999853 224332 2344444443 344 4666787775
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=87.74 E-value=12 Score=35.18 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=56.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC------Cc---ceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG------AL---SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~------~g---~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADlVll 150 (745)
|+|+|.++.+.. +| ++.|...... .+ ..++..+.....+.++..+. .....+.. .++-||.+++
T Consensus 4 i~iiG~~~vGKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 4 LVVVGAGGVGKS-AL----TIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 789999998775 56 4444322211 11 11223333345677777753 23444433 4667999999
Q ss_pred EeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~---eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
|+|.+.. ..|+. +-.++++.....++| ++.|++..|.
T Consensus 79 v~~~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 118 (162)
T cd04138 79 VFAINSR------KSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL 118 (162)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 9998742 23443 333444433334555 4567888885
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=87.67 E-value=3.9 Score=39.54 Aligned_cols=102 Identities=8% Similarity=0.020 Sum_probs=58.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCC-CChHHHH-hHHhhcce
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADL 147 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~-~dl~~mL-D~aKvADl 147 (745)
.=|+|+|.++.+.. +| +.+|+...... | ..++..+...-+++++.++. ..+..+. ..++-||.
T Consensus 4 ~ki~vvG~~~~GKS-sl----~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~ 78 (167)
T cd01867 4 FKLLLIGDSGVGKS-CL----LLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 78 (167)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCE
Confidence 44889999988775 66 55554332111 2 22344444456888999873 2234444 34678999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~~q---GlP~vigvl~~L~~ 194 (745)
+|+++|++.+ ..|+. -...+..++.+ ++|- +.|.+..|.
T Consensus 79 ~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p~-iiv~nK~Dl 120 (167)
T cd01867 79 IILVYDITDE------KSFEN-IRNWMRNIEEHASEDVER-MLVGNKCDM 120 (167)
T ss_pred EEEEEECcCH------HHHHh-HHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 9999998753 23442 22344444433 4444 444566664
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=87.58 E-value=4.7 Score=39.19 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=57.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCcceEEEecCceeeEEEEeCCC-CChHHHH-hHHhhcceEEEEee
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS 153 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~------~~g~~tv~~~r~k~R~tfie~~~-~dl~~mL-D~aKvADlVlllid 153 (745)
|+|+|+++.+.. +| +..|..... +.|...+.+...+.++.|+.++- ..+..+. ...+-||.+|+|+|
T Consensus 2 i~ivG~~~vGKT-sl----i~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKT-SL----LHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 689999988875 56 444432211 11433333333457888888762 2344443 35788999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd~eg~e~L~~l~~-qGlP~vigvl~~L~~ 194 (745)
++.. ..|+..-..+..+++. .+.| ++.|.+..|.
T Consensus 77 ~t~~------~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 77 SADS------ERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCCH------HHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 8842 2243332233333332 4544 5667887774
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=87.37 E-value=8.5 Score=36.70 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=54.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-CC--------cceEEEecCceeeEEEEeCCC-CChHHHHhH-HhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-GA--------LSSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~~--------g~~tv~~~r~k~R~tfie~~~-~dl~~mLD~-aKvADlVl 149 (745)
-|+|+|.++.+.. +| +..|..... .. ...++..+.....++++..+. ..+..+.+. ++-||.+|
T Consensus 3 ki~i~G~~~vGKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 3 KVVVLGSGGVGKS-AL----TVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 4789999988775 55 333322211 11 112344444445677787652 234444443 57799999
Q ss_pred EEeeCCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~---e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+++|.+.. ..|+.-.. ++.+.....++| ++.|++..|.
T Consensus 78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl 118 (163)
T cd04176 78 VVYSLVNQ------QTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDL 118 (163)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99998842 22443222 222221123555 4556777774
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=87.28 E-value=4.3 Score=37.98 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC---C--c------ceEEEecCceeeEEEEeCCC-CCh---------HHHH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--L------SSTVSSSKYRLRTSVLQAPH-GDL---------VGCM 139 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~---~--g------~~tv~~~r~k~R~tfie~~~-~dl---------~~mL 139 (745)
.|+++|+++++.. ++ +..++..... . + ...+... ..+++++..|- .+. ..+.
T Consensus 3 ~i~l~G~~~~GKs-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~ 75 (157)
T cd04164 3 KVVIVGKPNVGKS-SL----LNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAR 75 (157)
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHH
Confidence 5789999998776 56 4444433211 1 1 1122222 35788888762 122 2345
Q ss_pred hHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 140 D~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
...+-||++++++|++.. ++...+..++...-..++.|+++.|.
T Consensus 76 ~~~~~~~~~v~v~d~~~~-----------~~~~~~~~~~~~~~~~vi~v~nK~D~ 119 (157)
T cd04164 76 EAIEEADLVLFVIDASRG-----------LDEEDLEILELPADKPIIVVLNKSDL 119 (157)
T ss_pred HHHhhCCEEEEEEECCCC-----------CCHHHHHHHHhhcCCCEEEEEEchhc
Confidence 567789999999999942 12222333433444667888998885
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=86.98 E-value=3.8 Score=49.97 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=63.0
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC--CC---cceE----EEecCceeeEEEEeCCCCC-----h-----HHHHh
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT--GA---LSST----VSSSKYRLRTSVLQAPHGD-----L-----VGCME 140 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~--~~---g~~t----v~~~r~k~R~tfie~~~~d-----l-----~~mLD 140 (745)
..|+|+|.++.+.. +| ++.|+.... .. |... ....--...+.|+.++--+ + ..+..
T Consensus 276 ~~V~IvG~~nvGKS-SL----~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKS-TL----VNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 45999999987765 67 555543321 11 2211 1111012467788776211 1 22345
Q ss_pred HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+++-||++|||+|++.| +...-.++++.|+.+|.|-+ .|++..|.
T Consensus 351 ~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~ 395 (712)
T PRK09518 351 AVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKPVV-LAVNKIDD 395 (712)
T ss_pred HHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 67889999999999854 66666788888889998654 47788775
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=86.93 E-value=11 Score=37.94 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=54.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlVll 150 (745)
|+|+|.++.+.. +| +..+....... ....+..+....+++|+..+-. ....|.. .++-||.|||
T Consensus 2 v~vvG~~~vGKT-sl----l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil 76 (198)
T cd04147 2 LVFMGAAGVGKT-AL----IQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence 689999988765 55 33332111111 1123333444467888888721 2333332 3577999999
Q ss_pred EeeCCCccccccccccChH---HHHHHHHHHhcCCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSF---GNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~e---g~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
|+|++.. ..|+.- -..++......++|- +.|++..|.
T Consensus 77 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 116 (198)
T cd04147 77 VYAVDDP------ESFEEVERLREEILEVKEDKFVPI-VVVGNKADS 116 (198)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCcE-EEEEEcccc
Confidence 9999853 223322 223333333346665 446677764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=86.49 E-value=8.4 Score=38.36 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=56.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC--CC-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HhHHhhcceE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT--GA-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLV 148 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~--~~-----g----~~tv~~~r~k~R~tfie~~~~-dl~~m-LD~aKvADlV 148 (745)
|+|+|.++++.. +| +..+..... .. + ...+..+..+-+++++..+.. .+..+ ...++-||.+
T Consensus 3 i~vvG~~~vGKT-Sl----i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 3 VMLLGDSGVGKT-CL----LVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 789999988775 66 444432221 11 1 112333444567777777622 24333 3456779999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~q---GlP~vigvl~~L~~ 194 (745)
|+|+|++.. ..|+.- ...+..+... ++| ++.|++..|.
T Consensus 78 i~v~D~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 78 LLLYDITNK------ASFDNI-RAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 999999842 224322 2244444443 343 6667787775
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=9.5 Score=38.66 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=58.1
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----c----ceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcc
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVAD 146 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g----~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvAD 146 (745)
.++=|+|+|.++.+.. +| +..|....... | ..++..+....++.|+.++- ..+..+.+ ..+-||
T Consensus 13 ~~~kv~ivG~~~vGKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 13 LSFKILLIGDSGVGKS-SL----LVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cceEEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3455889999987775 56 44443222111 2 12233333346788888873 23444443 356799
Q ss_pred eEEEEeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 004554 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd~eg~e~L~~l~~----qGlP~vigvl~~L~~ 194 (745)
.+||++|++.. ..|+.-...++..+.. .++| ++.|.+..|.
T Consensus 88 ~~vlv~D~~~~------~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 88 GIILVYDVTRR------ETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99999999852 2244332223333332 3444 4556777774
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=86.46 E-value=8.7 Score=37.10 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccC--CCCCc---ceEEEecCceeeEEEEeCCC-CChHHHHhH-HhhcceEEEEee
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSE--GTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAFVAS 153 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~--~~~~g---~~tv~~~r~k~R~tfie~~~-~dl~~mLD~-aKvADlVlllid 153 (745)
=|+++|.++++.. +|++.+++.-... ..+.+ ..++..+....++.++..+- ..+.++.+. .+.||.+||++|
T Consensus 3 ki~liG~~~~GKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 3 KIVVLGAGGVGKS-ALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 3789999998775 5633223221100 11111 12333444456778888763 345555555 478999999999
Q ss_pred CCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 154 ASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 154 as~g~~~~~~~~fd---~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+.. ..|+ .+-.++++....-+.|-+ .|.+..|.
T Consensus 82 ~~~~------~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 82 VTSE------ASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred CCCH------HHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 8853 2243 333444443334567754 46777774
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.1 Score=42.26 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=58.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----c-ceEEEecCce---eeEEEEeCCC-CChHHH-------HhHH--
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L-SSTVSSSKYR---LRTSVLQAPH-GDLVGC-------MEMA-- 142 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----g-~~tv~~~r~k---~R~tfie~~~-~dl~~m-------LD~a-- 142 (745)
-||++|.|..+.. +| +..+++..... | .+....+.++ ..+.|+-.|- -++.+. .+..
T Consensus 2 ~ialvG~PNvGKS-tL----fN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 2 RIALVGNPNVGKS-TL----FNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp EEEEEESTTSSHH-HH----HHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 5899999998775 67 66666554221 1 1111222222 6888888772 133221 2221
Q ss_pred hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 143 KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.-.|+|++++||+. ++ ...+++.-|...|+|-| .||+..|.
T Consensus 77 ~~~D~ii~VvDa~~---------l~-r~l~l~~ql~e~g~P~v-vvlN~~D~ 117 (156)
T PF02421_consen 77 EKPDLIIVVVDATN---------LE-RNLYLTLQLLELGIPVV-VVLNKMDE 117 (156)
T ss_dssp TSSSEEEEEEEGGG---------HH-HHHHHHHHHHHTTSSEE-EEEETHHH
T ss_pred cCCCEEEEECCCCC---------HH-HHHHHHHHHHHcCCCEE-EEEeCHHH
Confidence 24899999999984 43 45678888889999954 45666664
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=86.29 E-value=14 Score=35.73 Aligned_cols=101 Identities=9% Similarity=0.084 Sum_probs=53.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------cc---eEEEecCceeeEEEEeCCCCC-hHHHH-hHHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g~---~tv~~~r~k~R~tfie~~~~d-l~~mL-D~aKvADlVll 150 (745)
|+|+|+++++.. +| +..|....... +. ..+.....+-.+.++..+... ...+. -..+-||.+++
T Consensus 4 i~iiG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 4 LVIVGDGACGKT-CL----LIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 789999998775 56 44443322111 11 123334334467777765222 22221 23466999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
++|.+.- ..|+.....++..++.. ++| ++.|.+..|.
T Consensus 79 v~~~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 117 (175)
T cd01870 79 CFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 117 (175)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhc
Confidence 9998742 22443333445544432 444 5566777664
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=86.23 E-value=16 Score=38.65 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=79.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-C-----c---ceEEEecCceeeEEEEeCCC-CChHHHHhH-HhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-A-----L---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~-~-----g---~~tv~~~r~k~R~tfie~~~-~dl~~mLD~-aKvADlVll 150 (745)
|+|+|.++.+.. +| +..|...... . + ..++.+....-.++++..+. .++.+|-.. .+-||.+||
T Consensus 3 VvvlG~~gvGKT-SL----i~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 3 MVVLGASKVGKT-AI----VSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred EEEECcCCCCHH-HH----HHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 789999888765 66 4444221111 1 1 11223333345677777753 334445443 467999999
Q ss_pred EeeCCCccccccccccCh---HHHHHHHHH--------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 004554 151 VASASSFSEESMSYYIDS---FGNQCLSVF--------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~---eg~e~L~~l--------~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~K 219 (745)
|+|.+.. ..|+. +-.+++..- ...++| +|.|.+..|.. ..+.-....++..+... .+..
T Consensus 78 Vfdv~~~------~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~-~~~~v~~~ei~~~~~~~--~~~~ 147 (247)
T cd04143 78 VFSLDNR------ESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRD-FPREVQRDEVEQLVGGD--ENCA 147 (247)
T ss_pred EEeCCCH------HHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccch-hccccCHHHHHHHHHhc--CCCE
Confidence 9998842 23443 223333321 012344 55677877751 11111112222222111 1356
Q ss_pred eEEeCC--HHHHHHHHHHHhhccccCCccccCCC
Q 004554 220 FYAADT--KDELHKFLWLFKEQRLTVPHWRNQRP 251 (745)
Q Consensus 220 lf~l~~--~~e~~nL~R~I~~~k~r~l~WR~~rp 251 (745)
+|.+|. ...+..|...|..+...|..|..++.
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p~e~~~~~~ 181 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLH 181 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccCcccc
Confidence 777773 34566777777776666666554444
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=9.6 Score=42.28 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=26.1
Q ss_pred eeEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCc
Q 004554 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (745)
Q Consensus 123 ~R~tfie~~~~dl~~mLD~aKvADlVlllidas~g 157 (745)
-.+.||+-. ..-.+-.+++..||+||++++...|
T Consensus 149 ~d~viieT~-Gv~qs~~~i~~~aD~vlvv~~p~~g 182 (332)
T PRK09435 149 YDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAG 182 (332)
T ss_pred CCEEEEECC-CCccchhHHHHhCCEEEEEecCCch
Confidence 367788876 5557778899999999999975543
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=85.96 E-value=9.4 Score=36.75 Aligned_cols=101 Identities=8% Similarity=0.025 Sum_probs=59.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g~----~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADlVl 149 (745)
|+|+|+++.+.. +| +..+....... |. .++.....+-.+.++.++... ...+ .-..+-||.+|
T Consensus 4 i~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 4 LLIIGNSSVGKT-SF----LFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 789999998775 56 55554332111 21 133333334578888886311 2222 33468899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qG--lP~vigvl~~L~~ 194 (745)
+|+|.+.. ..|+. -.+.++.++.+. -+.++.|.+..|.
T Consensus 79 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 79 LMYDITNE------ESFNA-VQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCCEEEEEECccc
Confidence 99998853 33543 244555665543 2447778888875
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.76 E-value=45 Score=36.57 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=130.6
Q ss_pred CCEEEEEecC---CCccChhhHHHHHHHhhcc----CC-CC---C---cceEEEec-----CceeeEEEEeCCC-CC-hH
Q 004554 78 PPRVIVLFGL---SASVNLNSVREDLLRQLSS----EG-TG---A---LSSTVSSS-----KYRLRTSVLQAPH-GD-LV 136 (745)
Q Consensus 78 pP~iV~Vv~l---~~~~~~~sl~~~~vk~~~~----~~-~~---~---g~~tv~~~-----r~k~R~tfie~~~-~d-l~ 136 (745)
|=.-|+.+|- .++++...+...+.+.... ++ +. + --||++.. --+|-..++-||- .| +-
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 3344666664 3477777775554543211 11 11 1 33555432 2368899999973 33 78
Q ss_pred HHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhH-----HHHHHHHhhc
Q 004554 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRK-----DLKKMCISSL 210 (745)
Q Consensus 137 ~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~-~~Kk~~-----~~kK~lk~~f 210 (745)
+||--|--+|-.||+++|..|.. ..|.|=+=..+.-|+|.++.+|+..|+ +-.... .++-.|..|
T Consensus 91 NMItgAaqmDgAILVVsA~dGpm--------PqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y- 161 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPM--------PQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY- 161 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCC--------CcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc-
Confidence 89999999999999999997732 467777777788899999999999986 212222 255555543
Q ss_pred ccccC-------CCCeeEEeCC----HHHHHHHHHHHhhccccCCccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEe
Q 004554 211 TSEFP-------EDCKFYAADT----KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLR 279 (745)
Q Consensus 211 ~~e~~-------~~~Klf~l~~----~~e~~nL~R~I~~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvR 279 (745)
.|+ .|++|-.|.+ ..-|..|+-.+.+--|.|-. -...|++++=.=-+.-+ .+..+++|-|-
T Consensus 162 --~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-~~dkPflmpvEdvfsIs-----grgtvvtGrVe 233 (394)
T COG0050 162 --GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-DIDKPFLMPVEDVFSIS-----GRGTVVTGRVE 233 (394)
T ss_pred --CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-cccccccccceeeEEEc-----CceeEEEEEEe
Confidence 344 3566666664 44456777777666665543 34577777532112111 36788999886
Q ss_pred CCCCCCCCeEEeCCCCcee
Q 004554 280 AHCLSVNQLVHISGAGDFQ 298 (745)
Q Consensus 280 G~~l~~n~lVHIpG~GDFq 298 (745)
-.-|++|.-|-|+|+.+-+
T Consensus 234 RG~lkvg~eveivG~~~~~ 252 (394)
T COG0050 234 RGILKVGEEVEIVGIKETQ 252 (394)
T ss_pred eeeeccCCEEEEecccccc
Confidence 5569999999999988543
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=85.64 E-value=8.8 Score=44.24 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=56.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----ce--EEEecCceeeEEEEeCCC-CCh---------HH
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----SS--TVSSSKYRLRTSVLQAPH-GDL---------VG 137 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g----~~--tv~~~r~k~R~tfie~~~-~dl---------~~ 137 (745)
+.-|+|+|.++.+.. +| +..+++.+. +. | .+ .+..+. ..++++-.+- .+. ..
T Consensus 215 ~~kV~ivG~~nvGKS-SL----ln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~ 287 (449)
T PRK05291 215 GLKVVIAGRPNVGKS-SL----LNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIER 287 (449)
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHH
Confidence 356899999988765 67 555544331 11 1 11 122332 4677786652 222 23
Q ss_pred HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 138 mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+..++-||++|+|+|++.+ ...+-.+++.. .++.| ++.|++..|.
T Consensus 288 ~~~~~~~aD~il~VvD~s~~--------~s~~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEP--------LTEEDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred HHHHHHhCCEEEEEecCCCC--------CChhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 45668889999999999853 22222333333 45554 5677888775
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=85.54 E-value=5.4 Score=39.22 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=59.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhc-cCCCCC----cc--eEEEecCceeeEEEEeCCC-CChHHHHhH-HhhcceEE
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLS-SEGTGA----LS--STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA 149 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~-~~~~~~----g~--~tv~~~r~k~R~tfie~~~-~dl~~mLD~-aKvADlVl 149 (745)
..-|+++|+++++.. +| +..+. +.-... |. .++.. ...++.|+.++- .....+... .+-||.+|
T Consensus 13 ~~ki~l~G~~~~GKT-sL----~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 13 EMRILMVGLDAAGKT-TI----LYKLKLGESVTTIPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred ccEEEEEcCCCCCHH-HH----HHHHhcCCCCCcCCccccceEEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 355889999998875 56 34332 211111 21 12222 235677888763 234455444 58899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
+|+|++.- ..|+..-..+...++.+.+ +.++.|++..|.
T Consensus 86 ~v~D~t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 86 FVVDSNDR------DRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred EEEECCCH------HHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 99999842 2355544455555544433 245667888885
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.38 E-value=6 Score=43.53 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=67.4
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC--cceE---EEec---CceeeEEEEeCCC---------CC--hHHHHhH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSST---VSSS---KYRLRTSVLQAPH---------GD--LVGCMEM 141 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g~~t---v~~~---r~k~R~tfie~~~---------~d--l~~mLD~ 141 (745)
-|+|-|.|+.+.. || ++.+|.-..+. -|.| |.+| +.--|+|+|--|- |+ .++++-+
T Consensus 170 TivVaG~PNVGKS-Sl----v~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 170 TIVVAGYPNVGKS-SL----VRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred eEEEecCCCCcHH-HH----HHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 4557788887765 78 88888766544 2332 2223 2224999998762 33 4678889
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.=++|+|||++|+|..- ++..|++-..+-++=-.-. +.++.|++.+|.
T Consensus 245 ~hl~~~IlF~~D~Se~c----gy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~ 292 (346)
T COG1084 245 RHLAGVILFLFDPSETC----GYSLEEQISLLEEIKELFK-APIVVVINKIDI 292 (346)
T ss_pred HHhcCeEEEEEcCcccc----CCCHHHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 99999999999998521 1334554444433333333 778899999995
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=85.33 E-value=6.7 Score=38.84 Aligned_cols=100 Identities=5% Similarity=-0.033 Sum_probs=56.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-C------Cc----ceEEEecCceeeEEEEeCCCC-ChHHHHh-HHhhcceE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-G------AL----SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLV 148 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~------~g----~~tv~~~r~k~R~tfie~~~~-dl~~mLD-~aKvADlV 148 (745)
|+|+|.++.+.. +| +..|..... . .| ...+..+...-++.|+.++.. ....+.. ..+-||.+
T Consensus 3 i~vvG~~~vGKS-sL----i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 3 VVMLGKESVGKT-SL----VERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 789999987765 56 443322111 1 12 123444555566778877522 2333332 23469999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
|||+|.+.. ..|+.- ..+|..++.. +.| ++.|.+..|.
T Consensus 78 ilv~d~~~~------~s~~~~-~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 78 IVCYDLTDS------SSFERA-KFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 999998742 224332 3455555544 554 6777887774
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=12 Score=37.05 Aligned_cols=103 Identities=12% Similarity=0.023 Sum_probs=56.5
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC------Ccc---eEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcceE
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG------ALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV 148 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~------~g~---~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADlV 148 (745)
+=|+|+|.++.+.. +| +..|...... .+. .++.++.....+.++..+- .+...+.. ..+-||.+
T Consensus 6 ~Ki~iiG~~~~GKT-sL----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 6 YKLVVVGGGGVGKS-AL----TIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 44778999987765 56 4444322211 121 2223343345677787752 34444443 56789999
Q ss_pred EEEeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~---eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
|+++|.+.. ..|+. |-.++++.+...++| ++.|.+..|.
T Consensus 81 ilv~D~s~~------~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl 122 (189)
T PTZ00369 81 LCVYSITSR------SSFEEIASFREQILRVKDKDRVP-MILVGNKCDL 122 (189)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 999999853 22433 223333333233444 4556777764
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=84.97 E-value=20 Score=41.04 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=54.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCCh----------HHHHh
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGDL----------VGCME 140 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~------g~~t--v~~~r~k~R~tfie~~~~dl----------~~mLD 140 (745)
-|++||+|+.+.. +| +..+++.... . .|.. +.... ..+|+|+-.| .=+ ...|-
T Consensus 160 dVglVG~pNaGKS-TL----Ln~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~P-Gliega~~~~gLg~~fLr 232 (424)
T PRK12297 160 DVGLVGFPNVGKS-TL----LSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIP-GLIEGASEGVGLGHQFLR 232 (424)
T ss_pred cEEEEcCCCCCHH-HH----HHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECC-CCcccccccchHHHHHHH
Confidence 4899999987764 66 5555543321 1 1111 11110 3578888776 321 23444
Q ss_pred HHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT 194 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~-----qGlP~vigvl~~L~~ 194 (745)
.+.-||++|+|+|++.... ...++. -..+++.|.. .+.|.+ .|++..|.
T Consensus 233 hier~~llI~VID~s~~~~---~dp~e~-~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL 286 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEG---RDPIED-YEKINKELKLYNPRLLERPQI-VVANKMDL 286 (424)
T ss_pred HHhhCCEEEEEEeCCcccc---CChHHH-HHHHHHHHhhhchhccCCcEE-EEEeCCCC
Confidence 4556999999999973100 011211 1233444443 355554 56887775
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=84.83 E-value=3.2 Score=41.05 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=63.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc--eEEEecCceeeEEEEeCCCCC--hHHHH-hHHhhcc
Q 004554 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS--STVSSSKYRLRTSVLQAPHGD--LVGCM-EMAKVAD 146 (745)
Q Consensus 77 ~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g~--~tv~~~r~k~R~tfie~~~~d--l~~mL-D~aKvAD 146 (745)
....=|+|+||.+++.. ++ ++++....... |. .++.. .+.+++|.+++ .+ +.++- ...+-+|
T Consensus 12 ~~~~~ililGl~~sGKT-tl----l~~l~~~~~~~~~pT~g~~~~~i~~--~~~~~~~~d~g-G~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKT-TL----LNRLKNGEISETIPTIGFNIEEIKY--KGYSLTIWDLG-GQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TSEEEEEEEESTTSSHH-HH----HHHHHSSSEEEEEEESSEEEEEEEE--TTEEEEEEEES-SSGGGGGGGGGGHTTES
T ss_pred CcEEEEEEECCCccchH-HH----HHHhhhccccccCcccccccceeee--CcEEEEEEecc-ccccccccceeeccccc
Confidence 44566899999998886 56 55554322211 32 23333 35789999997 44 32322 3456799
Q ss_pred eEEEEeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 004554 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd~eg~e~L~~l~---~qGlP~vigvl~~L~~ 194 (745)
.|+||+|++.. ..+++--.++-++|. .++.| ++.+++.-|.
T Consensus 84 ~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~ 127 (175)
T PF00025_consen 84 GIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIP-ILILANKQDL 127 (175)
T ss_dssp EEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTS
T ss_pred eeEEEEecccc------eeecccccchhhhcchhhcccce-EEEEeccccc
Confidence 99999999942 346666666666655 44555 3344666553
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=84.61 E-value=16 Score=35.16 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=57.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHHH-HhHHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----------g~~tv~~~r~k~R~tfie~~~~d-l~~m-LD~aKvADlVl 149 (745)
|+|+|.++.+.. +| +.+|....... ...++.....+-++.++.++-.. +.++ ....+=||.+|
T Consensus 5 i~iiG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 5 YIIIGDMGVGKS-CL----LHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 789999988775 66 55554332111 12233444445678888876222 2232 34578899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP--~vigvl~~L~~ 194 (745)
||+|.+.. ..|+.- .+.++.++...-| .++.|.++.|.
T Consensus 80 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 80 MVYDITRR------STYNHL-SSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence 99999842 224322 2444444333333 35556787774
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=84.25 E-value=16 Score=40.34 Aligned_cols=143 Identities=10% Similarity=0.152 Sum_probs=67.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCCh----------HHHHhH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGDL----------VGCMEM 141 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~-------~~-g~~--tv~~~r~k~R~tfie~~~~dl----------~~mLD~ 141 (745)
|++||++..+.. +| +..++.... +. .|. .+.... ..+++|+-.| .-+ ...|..
T Consensus 160 V~lvG~pnaGKS-TL----l~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~P-Gli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 160 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIP-GLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCC-CcccCCcccccHHHHHHHH
Confidence 899999987765 56 555543221 11 111 112221 2678888776 321 233444
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHH-hcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR-SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~-~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~~~~Kl 220 (745)
..-||++|+|+|++.....+....++.+-.++..... ....| ++.|++.+|.... ... +.+...|...+ +..+
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~--~~~-~~~~~~l~~~~--~~~v 306 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDE--EEL-AELLKELKKAL--GKPV 306 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCCh--HHH-HHHHHHHHHHc--CCcE
Confidence 5569999999998841000000112222222222211 12344 4557888885111 111 12222232223 2467
Q ss_pred EEeCC--HHHHHHHHHHHh
Q 004554 221 YAADT--KDELHKFLWLFK 237 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~ 237 (745)
|.+|. ..-+..|+..|.
T Consensus 307 i~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 307 FPISALTGEGLDELLYALA 325 (329)
T ss_pred EEEEccCCcCHHHHHHHHH
Confidence 88774 233555655554
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=83.80 E-value=16 Score=35.13 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=55.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-----CC-cceE---EEecCceeeEEEEeCCCC-ChHHHH-hHHhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA-LSST---VSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~-g~~t---v~~~r~k~R~tfie~~~~-dl~~mL-D~aKvADlVl 149 (745)
-|+|+|.++.+.. +| ++.|..... .. +..+ +.......++.|+..+.. ....+. ...+-||.+|
T Consensus 3 kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 3 RVVVFGAGGVGKS-SL----VLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 3789999988775 56 444433221 11 2111 222333456778877532 233332 2456799999
Q ss_pred EEeeCCCccccccccccChH--HHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSF--GNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~e--g~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
+|+|.+.. ..|+.. -.+.|..++. .++| +|.|.+..|.
T Consensus 78 lv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (165)
T cd04140 78 LVYSVTSK------QSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE 120 (165)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence 99998853 234322 1233333332 4566 5567888775
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=83.76 E-value=19 Score=34.64 Aligned_cols=101 Identities=10% Similarity=0.050 Sum_probs=58.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCC-hHHHHh-HHhhcceEEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~R~tfie~~~~d-l~~mLD-~aKvADlVll 150 (745)
|+|+|.++.+.. +| +..|....... -..++..+...-.++++..+..+ ...+.. ..+-||.+||
T Consensus 1 i~i~G~~~vGKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 1 LVVVGDGAVGKT-CL----LISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred CEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence 579999988775 66 44443332211 11223334434467888775322 223333 3467999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
++|.+.. ..|+.-...++..++.+ +. .+|.|.++.|.
T Consensus 76 v~d~~~~------~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl 114 (174)
T smart00174 76 CFSVDSP------ASFENVKEKWYPEVKHFCPNT-PIILVGTKLDL 114 (174)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCC-CEEEEecChhh
Confidence 9998842 34655444456666554 33 45667787775
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=83.75 E-value=8.4 Score=44.35 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CChHH--------
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GDLVG-------- 137 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~--g~------~tv~~~r~k~R~tfie~~~-~dl~~-------- 137 (745)
.+.-|+|+|.++.+.. +| ++.|++.+. +. |. .++..+. ..++++-.+- .+..+
T Consensus 202 ~g~kVvIvG~~nvGKS-SL----iN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~ 274 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKS-SL----LNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIE 274 (442)
T ss_pred cCCEEEEECCCCCcHH-HH----HHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHH
Confidence 3456889999998875 67 555544321 11 21 1222332 3567776652 22222
Q ss_pred -HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 138 -CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 138 -mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+...+-||++|+|+|++.+ ...+.. ++..++..|.| ++.|++..|.
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~--------~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl 322 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQP--------LTKDDF-LIIDLNKSKKP-FILVLNKIDL 322 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCC--------CChhHH-HHHHHhhCCCC-EEEEEECccC
Confidence 24566789999999999853 222222 56666666765 5678898885
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=83.63 E-value=16 Score=35.09 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=57.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-CC-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HhHHhhcceE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-GA-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLV 148 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-~~-----g----~~tv~~~r~k~R~tfie~~~~-dl~~m-LD~aKvADlV 148 (745)
-|+|+|+++.+.. +| +.+|..... .. | ..++..+....++.++.++.. ...++ -...+.||.+
T Consensus 2 ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04117 2 RLLLIGDSGVGKT-CL----LCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI 76 (161)
T ss_pred EEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence 4789999998876 56 444432221 11 2 224444544567788887632 22222 3456889999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl--P~vigvl~~L~~ 194 (745)
++++|.+.. ..|+.. ...+..+..+.. ..++.|.+..|.
T Consensus 77 i~v~d~~~~------~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 77 FLVYDISSE------RSYQHI-MKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence 999998742 335443 344555554432 234556677664
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=83.60 E-value=19 Score=34.58 Aligned_cols=107 Identities=6% Similarity=0.019 Sum_probs=58.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hHHHH-hHHhhcc
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVAD 146 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g----~~tv~~~r~k~R~tfie~~~~d-l~~mL-D~aKvAD 146 (745)
..=|+|+|.++++.. +| ++.|....... | ..++.....+-++.++.++... ...+. ...+-||
T Consensus 5 ~~ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 79 (170)
T cd04116 5 LLKVILLGDGGVGKS-SL----MNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD 79 (170)
T ss_pred EEEEEEECCCCCCHH-HH----HHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCC
Confidence 355889999988765 66 44443222111 2 1233344445677788776322 22222 3567899
Q ss_pred eEEEEeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 004554 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (745)
Q Consensus 147 lVlllidas~g~~~~~~~~fd~eg~e~L~~l~~---qGlP~vigvl~~L~~ 194 (745)
.+|+++|.+.... ...+..|-.++++.+.. .++|-++ |++..|.
T Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl 126 (170)
T cd04116 80 CCLLTFAVDDSQS---FQNLSNWKKEFIYYADVKEPESFPFVV-LGNKNDI 126 (170)
T ss_pred EEEEEEECCCHHH---HHhHHHHHHHHHHhcccccCCCCcEEE-EEECccc
Confidence 9999999874300 01233455555555432 3455444 6777775
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=83.51 E-value=5.7 Score=41.49 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=54.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC--------cc--eEEEecCceeeEEEEeCCCCC----------hHHHHhH
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LS--STVSSSKYRLRTSVLQAPHGD----------LVGCMEM 141 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--------g~--~tv~~~r~k~R~tfie~~~~d----------l~~mLD~ 141 (745)
|+++|+++++.. +| ++.+++..... .+ -.+... ..+++++..| .- ...++.+
T Consensus 3 v~lvG~~~~GKS-tL----l~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~Dtp-G~~~~~~~~~~~~~~~l~~ 74 (233)
T cd01896 3 VALVGFPSVGKS-TL----LSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLP-GIIEGAADGKGRGRQVIAV 74 (233)
T ss_pred EEEECCCCCCHH-HH----HHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECC-CcccccccchhHHHHHHHh
Confidence 789999988775 67 66665543211 11 112222 3678888776 31 1356889
Q ss_pred HhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCC
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL 182 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl 182 (745)
++-||++|+|+|++.. +..-..++..|...|+
T Consensus 75 ~~~ad~il~V~D~t~~---------~~~~~~~~~~l~~~gi 106 (233)
T cd01896 75 ARTADLILMVLDATKP---------EGHREILERELEGVGI 106 (233)
T ss_pred hccCCEEEEEecCCcc---------hhHHHHHHHHHHHcCc
Confidence 9999999999999742 2345567777877777
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.12 E-value=7.2 Score=44.63 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=80.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----c--------ceEEEecCceeeEEEEeCCC---CC---h-----
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--------SSTVSSSKYRLRTSVLQAPH---GD---L----- 135 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g--------~~tv~~~r~k~R~tfie~~~---~d---l----- 135 (745)
.+|||||=|.-+.. +| ...|++..... | ...+. + +.|++|--+- ++ |
T Consensus 4 ~~VAIVGRPNVGKS-TL----FNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~---~~f~lIDTgGl~~~~~~~l~~~i~ 74 (444)
T COG1160 4 PVVAIVGRPNVGKS-TL----FNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-G---REFILIDTGGLDDGDEDELQELIR 74 (444)
T ss_pred CEEEEECCCCCcHH-HH----HHHHhCCeeeEeecCCCCccCCccceeEEc-C---ceEEEEECCCCCcCCchHHHHHHH
Confidence 57999998886664 66 66665544221 2 22222 2 3477775532 12 2
Q ss_pred HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP 215 (745)
Q Consensus 136 ~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~~~~kK~lk~~f~~e~~ 215 (745)
...+-|+.-||+||||+|+..| ...+-+++-+.|+-.+-| |+.|++.+|. ++.. ....-||+.-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~--~~~e----~~~~efyslG- 138 (444)
T COG1160 75 EQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN--LKAE----ELAYEFYSLG- 138 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC--chhh----hhHHHHHhcC-
Confidence 2356788889999999999965 667888899999955555 6667788876 3211 1222344332
Q ss_pred CCCeeEEeCC--HHHHHHHHHHHhhc
Q 004554 216 EDCKFYAADT--KDELHKFLWLFKEQ 239 (745)
Q Consensus 216 ~~~Klf~l~~--~~e~~nL~R~I~~~ 239 (745)
-.+.+.+|. -.-+..|+-.|...
T Consensus 139 -~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 139 -FGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred -CCCceEeehhhccCHHHHHHHHHhh
Confidence 356777774 33344555555443
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=83.03 E-value=15 Score=37.92 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=56.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCCC-CC---------cceEEEecCceeeEEEEeCCCCChHHHHhHH-h-hcceE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLS-SEGT-GA---------LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMA-K-VADLV 148 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~-~~~~-~~---------g~~tv~~~r~k~R~tfie~~~~dl~~mLD~a-K-vADlV 148 (745)
|+|+|.++.+.. +| +..|. +... .. ...++.+......++|+.++..+ ..+-+.+ + -||.+
T Consensus 3 I~lvG~~gvGKT-sL----i~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~ad~i 76 (221)
T cd04148 3 VVMLGSPGVGKS-SL----ASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-MWTEDSCMQYQGDAF 76 (221)
T ss_pred EEEECCCCCcHH-HH----HHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-hHHHhHHhhcCCCEE
Confidence 789999988775 66 44442 2111 11 22344444445678888887333 2233333 4 79999
Q ss_pred EEEeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 004554 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (745)
Q Consensus 149 lllidas~g~~~~~~~~fd~eg~e~L~~l~~q----GlP~vigvl~~L~~ 194 (745)
|||+|++.. ..|+. ..+++..|... +.| +|.|.+..|.
T Consensus 77 ilV~d~td~------~S~~~-~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 77 VVVYSVTDR------SSFER-ASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 999999853 23442 23344444443 344 5677787774
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=83.01 E-value=36 Score=33.02 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=55.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC------c---ceEEEecCceeeEEEEeCCCCChHHHH--hHHhhcceEE
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L---SSTVSSSKYRLRTSVLQAPHGDLVGCM--EMAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g---~~tv~~~r~k~R~tfie~~~~dl~~mL--D~aKvADlVl 149 (745)
=|+|+|+++.+.. +| ++.+....... + ...+......-++.++..+...-..++ .....+|.+|
T Consensus 3 kv~l~G~~g~GKT-tl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 3 KIAVLGSRSVGKS-SL----TVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 3789999987775 55 44443222111 1 122333333456777877632222222 3567799999
Q ss_pred EEeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg---~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
+++|.+.. ..|+.-- ..+++....+++| ++.|.+..|.
T Consensus 78 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 118 (180)
T cd04137 78 LVYSVTSR------KSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDL 118 (180)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhh
Confidence 99998853 2233222 3333333345667 5667776664
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=82.95 E-value=18 Score=34.55 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCC----------hHHHHhHHhhcceEEEEeeCCC
Q 004554 123 LRTSVLQAPHGD----------LVGCMEMAKVADLVAFVASASS 156 (745)
Q Consensus 123 ~R~tfie~~~~d----------l~~mLD~aKvADlVlllidas~ 156 (745)
.+++|+..| .- ...++..++-||.|++++|++.
T Consensus 44 ~~~~i~Dtp-G~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 44 ARIQVADIP-GLIEGASEGRGLGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred CeEEEEecc-ccchhhhcCCCccHHHHHHHhccCEEEEEEeccC
Confidence 578888776 31 2245667788999999999984
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=82.49 E-value=11 Score=37.06 Aligned_cols=101 Identities=9% Similarity=0.057 Sum_probs=56.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c---ceEEEec-CceeeEEEEeCCC-CChHHHHh-HHhhcceEE
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L---SSTVSSS-KYRLRTSVLQAPH-GDLVGCME-MAKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g---~~tv~~~-r~k~R~tfie~~~-~dl~~mLD-~aKvADlVl 149 (745)
|+|+|.++.+.. +| +..|....... + ..++..+ +..-.+.++..+. .....+.. ..+-||.+|
T Consensus 3 i~vvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 3 IVVVGDGGCGKT-CL----LIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 789999987775 56 44443222111 1 1122222 3345677887752 22334433 457899999
Q ss_pred EEeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~eg~e~L~~l~~--qGlP~vigvl~~L~~ 194 (745)
+++|.+.. ..|+.--...+..++. .+.| ++.|.++.|.
T Consensus 78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 117 (187)
T cd04132 78 ICYAVDNP------TSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDL 117 (187)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhh
Confidence 99999842 3354333334444432 3444 5667787774
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=82.42 E-value=4.5 Score=38.47 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=34.0
Q ss_pred HHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (745)
Q Consensus 136 ~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~ 194 (745)
...+.+++-||+||+|+|+... +..+-.++...|... |.| ++.|++..|.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p--------~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL 54 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNP--------LLFRPPDLERYVKEVDPRKK-NILLLNKADL 54 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCC--------cccCCHHHHHHHHhccCCCc-EEEEEechhc
Confidence 4677889999999999999853 222233555555544 654 5667888875
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=82.32 E-value=6.9 Score=37.84 Aligned_cols=48 Identities=8% Similarity=0.030 Sum_probs=31.8
Q ss_pred HHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 004554 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (745)
Q Consensus 138 mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~--qGlP~vigvl~~L~~ 194 (745)
+..+++=||+||+|+|++.. +...-..+++.|.. .|.| ++.|++..|.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p--------~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl 51 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDP--------MGTRCKHVEEYLKKEKPHKH-LIFVLNKCDL 51 (157)
T ss_pred hhHhhhhCCEEEEEEECCCC--------ccccCHHHHHHHHhccCCCC-EEEEEEchhc
Confidence 34667889999999999852 22223445555543 3455 6788998885
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.46 E-value=31 Score=38.15 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=56.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC--cce-E--EEec---CceeeEEEEeCCCCCh----------HHHHhHH
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSS-T--VSSS---KYRLRTSVLQAPHGDL----------VGCMEMA 142 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--g~~-t--v~~~---r~k~R~tfie~~~~dl----------~~mLD~a 142 (745)
-|++||+|+.+.. +| +..+|+...+. -++ | .+-+ =.--.|+++..| .=+ ..+|-++
T Consensus 65 ~v~lVGfPsvGKS-tL----L~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~P-gii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 65 TVALVGFPSVGKS-TL----LNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLP-GIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred EEEEEcCCCccHH-HH----HHHHhCCCccccccCceecccccceEeecCceEEEEcCc-ccccCcccCCCCcceeeeee
Confidence 4789999887764 66 77777655443 111 1 1111 112678899887 222 3488899
Q ss_pred hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCC
Q 004554 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL 182 (745)
Q Consensus 143 KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGl 182 (745)
.-||+|++++|+... .-.-.-+++-|..-|+
T Consensus 139 R~ADlIiiVld~~~~---------~~~~~~i~~ELe~~GI 169 (365)
T COG1163 139 RNADLIIIVLDVFED---------PHHRDIIERELEDVGI 169 (365)
T ss_pred ccCCEEEEEEecCCC---------hhHHHHHHHHHHhcCe
Confidence 999999999999842 1124567777777775
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=81.39 E-value=13 Score=34.83 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=37.9
Q ss_pred eeEEEEeCCC-CChHH-------HHhHH--hhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccC
Q 004554 123 LRTSVLQAPH-GDLVG-------CMEMA--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDL 192 (745)
Q Consensus 123 ~R~tfie~~~-~dl~~-------mLD~a--KvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L 192 (745)
..+.|+..|- .++.. +.... +-+|+||+++|++. .+. ...++..+...|.| ++.|++++
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~---------~~~-~~~~~~~~~~~~~~-~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN---------LER-NLYLTLQLLELGLP-VVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc---------chh-HHHHHHHHHHcCCC-EEEEEehh
Confidence 5788888873 12221 12222 48999999999984 222 22344555667876 56778887
Q ss_pred Cc
Q 004554 193 PT 194 (745)
Q Consensus 193 ~~ 194 (745)
|.
T Consensus 112 Dl 113 (158)
T cd01879 112 DE 113 (158)
T ss_pred hh
Confidence 74
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=81.31 E-value=40 Score=33.96 Aligned_cols=144 Identities=11% Similarity=0.163 Sum_probs=77.1
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC-CCC-----c----ceEEEecCceeeEEEEeCCC-CChHHHHh-HHhhcce
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-TGA-----L----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADL 147 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-~~~-----g----~~tv~~~r~k~R~tfie~~~-~dl~~mLD-~aKvADl 147 (745)
.=|+|+|..+.+.. +| +..|.... ... | ..++..+..+-+|.|+..+. .....+.. .++-||.
T Consensus 7 ~KivviG~~~vGKT-sl----l~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 7 LKFLLVGDSDVGKG-EI----LASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred eEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 44789999887765 55 44443211 111 1 23444455567788887642 34555554 3589999
Q ss_pred EEEEeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEE
Q 004554 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYA 222 (745)
Q Consensus 148 Vlllidas~g~~~~~~~~fd~eg~e~L~~l~~q--GlP~vigvl~~L~~~~Kk---~~~~kK~lk~~f~~e~~~~~Klf~ 222 (745)
+|||+|.+.. ..|+.- ...+..++.+ ++ .+|.|.++.|...++ ..+.+...++ . +..+|-
T Consensus 82 illVfD~t~~------~Sf~~~-~~w~~~i~~~~~~~-piilVGNK~DL~~~~~v~~~~~~~~a~~----~---~~~~~e 146 (189)
T cd04121 82 IILVYDITNR------WSFDGI-DRWIKEIDEHAPGV-PKILVGNRLHLAFKRQVATEQAQAYAER----N---GMTFFE 146 (189)
T ss_pred EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCC-CEEEEEECccchhccCCCHHHHHHHHHH----c---CCEEEE
Confidence 9999999853 335433 2344444443 33 345567888851111 1222332222 1 345666
Q ss_pred eC-----CHHH-HHHHHHHHhhccccC
Q 004554 223 AD-----TKDE-LHKFLWLFKEQRLTV 243 (745)
Q Consensus 223 l~-----~~~e-~~nL~R~I~~~k~r~ 243 (745)
.| +-.| ...|++.|...+.+|
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i~~~~~~~ 173 (189)
T cd04121 147 VSPLCNFNITESFTELARIVLMRHGRP 173 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 66 2344 346666666555544
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=80.93 E-value=15 Score=45.22 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=74.4
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC--C-cceEEE-----ecCceeeEEEEeCCC-CChHH-----HH------
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-LSSTVS-----SSKYRLRTSVLQAPH-GDLVG-----CM------ 139 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~--~-g~~tv~-----~~r~k~R~tfie~~~-~dl~~-----mL------ 139 (745)
..|+++|.++++.. +| ++.+++.... . .-+|+. ......+++++-.|- .++.+ -+
T Consensus 4 ~~IaLvG~pNvGKS-TL----fN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKT-TL----FNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 46899999998775 67 5555543321 1 112221 111135778887762 22221 11
Q ss_pred hH--HhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh-HHHHHHHHhhcccccCC
Q 004554 140 EM--AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR-KDLKKMCISSLTSEFPE 216 (745)
Q Consensus 140 D~--aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~~~Kk~-~~~kK~lk~~f~~e~~~ 216 (745)
+. ...+|+||+|+|++. .+. ...++..++..|+| ++.|++.+|...++. ....+.+++.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~---------ler-~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i~id~~~L~~~L------ 141 (772)
T PRK09554 79 HYILSGDADLLINVVDASN---------LER-NLYLTLQLLELGIP-CIVALNMLDIAEKQNIRIDIDALSARL------ 141 (772)
T ss_pred HHHhccCCCEEEEEecCCc---------chh-hHHHHHHHHHcCCC-EEEEEEchhhhhccCcHHHHHHHHHHh------
Confidence 11 235899999999984 332 23455667778998 666788887511211 12233444433
Q ss_pred CCeeEEeCC--HHHHHHHHHHHhh
Q 004554 217 DCKFYAADT--KDELHKFLWLFKE 238 (745)
Q Consensus 217 ~~Klf~l~~--~~e~~nL~R~I~~ 238 (745)
|..++.++. ...+..|...|..
T Consensus 142 G~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 142 GCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred CCCEEEEEeecCCCHHHHHHHHHH
Confidence 456777773 2334455555544
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=80.76 E-value=12 Score=37.19 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=58.1
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCC-ChHHHHhH-HhhcceEEE
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVAF 150 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~-----~~g~--~tv~~~r~k~R~tfie~~~~-dl~~mLD~-aKvADlVll 150 (745)
.=|+++|+++++.. +| ++.|+.... +.|. .++... ..++.++.++-. .+..+... .+-||.+||
T Consensus 18 ~ki~ivG~~~~GKT-sl----~~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 18 MRILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred cEEEEECCCCCCHH-HH----HHHHccCCCccccCCcceeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34889999998775 56 444432111 1132 122222 356777877622 24444333 577999999
Q ss_pred EeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP--~vigvl~~L~~ 194 (745)
|+|++.. ..|++.-.++-..++...++ .++.|.+..|.
T Consensus 91 V~D~s~~------~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 91 VVDSNDR------DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred EEeCCcH------HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 9999852 33555444555555444333 34556788875
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=80.11 E-value=9.1 Score=37.17 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=47.6
Q ss_pred eEEEEeCCCCChHHHHhHHhhcceEEEEeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 004554 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 124 R~tfie~~~~dl~~mLD~aKvADlVlllidas~g~~~~~~~~fd~eg~e~L~~l~~qGlP~vigvl~~L~~ 194 (745)
.+.+|.||+..-...+.+...||.||++++++.. --.....++..++..+.+....|++..+.
T Consensus 64 d~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIERGFITAIAPADEALLVTTPEIS--------SLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCcEEEEeCCCcc--------hHHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7888999855444567778999999999998842 12356678888888888877777888875
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 745 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 7e-07
Identities = 83/571 (14%), Positives = 164/571 (28%), Gaps = 181/571 (31%)
Query: 52 QRNKMLRDQK--------RLALLKEKRASSGIASPPRVIVLFG--------LSASV---- 91
QR+++ D + RL + R + P + +++ G ++ V
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 92 -------------NLNSVRED---------LLRQLSSEGTGALSSTVS------SSKYRL 123
NL + LL Q+ T + + S + L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 124 RTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG 181
R + P+ + LV + + V +A + ++F C + L
Sbjct: 235 RRLLKSKPYENCLLV-------LLN----VQNAKA---------WNAFNLSC----KIL- 269
Query: 182 LPSTAVLIRDLP-TDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQR 240
+ R TD + + + D + K L K+L + Q
Sbjct: 270 -----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLKYLDC-RPQD 317
Query: 241 LTVPHWRNQR-PFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
L P P ++ ++A+ G T + +C + ++ S
Sbjct: 318 L--PREVLTTNPRRLS----IIAESIRDGLAT--WDNWKHVNCDKLTTIIESS------- 362
Query: 300 GKIEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQT- 358
+ +L+ P RK L V + P
Sbjct: 363 --LNVLE---PAEYRK--------MFDRLSVFP--------------PSAHIP---TILL 392
Query: 359 ---W---PTEAEMAEADQN------QKHRKQKKRALP------RGTSEYQAAW---IVDD 397
W M ++ +K K+ ++P + E + A IV D
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-D 451
Query: 398 SDEADSDSDNDADDGMVLDQEDR---GFPGY--EGTNNSDIDDD--QASLNFRYADDGTE 450
D+ D ++ D+ G+ + + + L+FR+ +
Sbjct: 452 HYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 451 NDSVMME--GEIL-TREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKS 507
+DS G IL T +Q++ I + + E + + F
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDFLPKIEENL 559
Query: 508 FRTSSWD-PKESLPPEYARIFAFDKFTRTQK 537
+ D + +L E IF + + Q+
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFE-EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 93/612 (15%), Positives = 176/612 (28%), Gaps = 153/612 (25%)
Query: 125 TSVLQAPHGDLVGCMEMAKVADL-VAFVASA--SSFSEESMSYYIDSFGNQCLSVFRSLG 181
T Q + D++ E A V + V S S+E + + I S + R
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRLFW 69
Query: 182 LPSTAVLIRDLPTDLKKR--KDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQ 239
+ ++ ++ +++ ++ L S + + + T+ ++ EQ
Sbjct: 70 T------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR--------MYIEQ 115
Query: 240 RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQL 299
R + + + F K +V + + L L L L + V I G
Sbjct: 116 R--DRLYNDNQVF---AKYNV-----SRLQPYLKLRQALLE--LRPAKNVLIDGVLGS-- 161
Query: 300 GK----IEILKDPFPLNARKESDAMESDEIHDLEVIRTLSPDPL--KLEPLLVENVPDPL 353
GK +++ K M+ +I L + SP+ + L+ LL + P+
Sbjct: 162 GKTWVALDVCLS------YKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 354 AGEQTWPTEAEMAEADQNQKHRKQKKRALPRG---TSEYQAAWIVD-------------D 397
+ + Q + R K + Q A +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 398 SDEADSDSDNDADDGMVLDQEDRGFPGYEGTN------NSDIDD--DQA--------SL- 440
D S + LD E + + D + S+
Sbjct: 275 KQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 441 ------------NFRYADDGTENDSVMMEGEILTREQIEDEIKKIKEAHAEDEEFPDEVD 488
N+++ + + +L E +K+ + + FP
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSV---FPPSAH 386
Query: 489 TPLDVPAR--------------KRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDK 531
P + + + KY ++ PKE S+P Y + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKESTISIPSIYLELKVKLE 440
Query: 532 FTRTQKH-VFANALKMEQE-NMDDSVPASL--YVRLHIKEVPAGIAHRL--CEMAERSPL 585
H + + + + DD +P L Y H I H L E ER L
Sbjct: 441 -NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-------IGHHLKNIEHPERMTL 492
Query: 586 IASGLLQHESKMSVLHFSVKK--HDTY--DAPIKAKEELIFHVGFRQFVARPIFSSDNMN 641
L F +K HD+ +A L ++ + I +D
Sbjct: 493 FRMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKY 541
Query: 642 SDKHK-MERFLH 652
+ FL
Sbjct: 542 ERLVNAILDFLP 553
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 745 | |||
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.29 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.06 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.06 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.9 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 97.64 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 97.57 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.54 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 97.46 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 97.25 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 97.25 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 97.13 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.06 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.77 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.13 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 95.84 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 95.72 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 94.72 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.36 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 84.68 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.55 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 80.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.34 |
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=4.8e-05 Score=50.50 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=91.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCC---------------------CCCC--CCEEEEECCCEEEEEEEECCC-C
Q ss_conf 987999944898669312899999854028---------------------9997--525997068033379994899-9
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSE---------------------GTGA--LSSTVSSSKYRLRTSVLQAPH-G 133 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~---------------------~~~~--g~~tv~~~r~k~Rltfi~~~~-~ 133 (745)
|++-|+|+|-.+++.. +|.+.|+...... ..+. +.+.+.. .+++++|+-+|- .
T Consensus 2 ~~ini~iiGhvd~GKS-TL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~--~~~~i~iiDtPGh~ 78 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKT-TLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHA 78 (204)
T ss_dssp CEEEEEEECSTTSSHH-HHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSG
T ss_pred CCEEEEEEECCCCCHH-HHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHCCCEEEEEEEEEEEE--CCEEEEEEECCCCH
T ss_conf 9719999947898499-99999999852304774113543113455775587579843799970--88189998289826
Q ss_pred C-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHH-HHHHHHHHHHC
Q ss_conf 9-677876873203689984088853233332247579999999875099855897305996-31305-99999987420
Q 004554 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL 210 (745)
Q Consensus 134 d-l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~-~~kk~-~~~kK~lk~~f 210 (745)
| +..|+-++.+||.+|||+||.. |+...+.+.|..++..|+|.++.+++.+|. +.+.+ ..+++.++.++
T Consensus 79 df~~~~~~~~~~aD~avlVvda~~--------Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l 150 (204)
T d2c78a3 79 DYIKNMITGAAQMDGAILVVSAAD--------GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 150 (204)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTT--------CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCC--------CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 549999999987899999998999--------984789999999998599938999985366798899999999999998
Q ss_pred CC-CCC-CCCEEEEECCH
Q ss_conf 23-258-99826981797
Q 004554 211 TS-EFP-EDCKFYAADTK 226 (745)
Q Consensus 211 ~~-ef~-~~~Klf~l~~~ 226 (745)
.. .|+ ....++..+.-
T Consensus 151 ~~~~~~~~~i~~i~~sa~ 168 (204)
T d2c78a3 151 NQYEFPGDEVPVIRGSAL 168 (204)
T ss_dssp HHTTSCTTTSCEEECCHH
T ss_pred HHCCCCCCCCEEEEEECH
T ss_conf 744999654234002322
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.06 E-value=0.00022 Score=45.94 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=84.0
Q ss_pred EEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEECCCCC-CHH
Q ss_conf 33379994899-99-67787687320368998408885323333224-7579999999875099855897305996-313
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (745)
Q Consensus 122 k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~f-d~~g~e~L~~L~aqGlP~vigvl~~L~~-~~k 197 (745)
.++++++-||- .| +..|+.++.+||++||++||..| + +..+.+.+.++..-|.+.+|.+++..|. +..
T Consensus 85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g--------i~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~ 156 (205)
T d2qn6a3 85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP--------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 156 (205)
T ss_dssp EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC--------SSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH
T ss_pred EEEEEEECCCHHHHHHHHHHCCEECCCCCCCCCCCCCC--------CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 37889842613888876401425026644200000140--------1332678999999981983265414567876514
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECC--HHHHHHHHHHHHHCCCC
Q ss_conf 0599999987420232589982698179--77899999998632546
Q 004554 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLT 242 (745)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~e~~nL~R~I~~~k~r 242 (745)
........++.+....++....++++|. -..+.+|+-.|..--|.
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 157 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 78999999999853116898869997678887849999988852899
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.06 E-value=0.00023 Score=45.70 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=90.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCC-------------CCC--CCEEEEE-----CCCEEEEEEEECCCCC---H
Q ss_conf 879999448986693128999998540289-------------997--5259970-----6803337999489999---6
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-------------TGA--LSSTVSS-----SKYRLRTSVLQAPHGD---L 135 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-------------~~~--g~~tv~~-----~r~k~Rltfi~~~~~d---l 135 (745)
.+-|+|+|=...+.. +|.+.|++.+.... ..+ .-+|+.+ .-.+++++|+-|| .. +
T Consensus 3 ~ini~iiGHvd~GKS-TL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtP-Gh~~f~ 80 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKT-TLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCP-GHADYV 80 (196)
T ss_dssp EEEEEEESSTTSSHH-HHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECS-SHHHHH
T ss_pred CCEEEEEECCCCCHH-HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECEEEEEEECCC-CHHHHH
T ss_conf 718999958898099-999999999987376125565410465655078841772369998121568752373-167789
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHH-HHHHHHHHHHCCCC
Q ss_conf 77876873203689984088853233332247579999999875099855897305996-31305-99999987420232
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLTSE 213 (745)
Q Consensus 136 ~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~-~~kk~-~~~kK~lk~~f~~e 213 (745)
..|+-++.+||.+|||+||..| +...|.+.+..++..|.+.+|.+++.+|. ....+ ..+++.++.++...
T Consensus 81 ~~~~~~~~~aD~allVVda~~G--------~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~ 152 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999987543767999986888--------76348999999998558848999855656660878999999999999971
Q ss_pred --CCCCCEEEEECCHH
Q ss_conf --58998269817977
Q 004554 214 --FPEDCKFYAADTKD 227 (745)
Q Consensus 214 --f~~~~Klf~l~~~~ 227 (745)
.+...-+.+.|..+
T Consensus 153 ~~~~~~~pii~iSa~~ 168 (196)
T d1d2ea3 153 GYKGEETPIIVGSALC 168 (196)
T ss_dssp TSCTTTSCEEECCHHH
T ss_pred CCCCCCCEEEEEECCC
T ss_conf 9995558799989452
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.90 E-value=0.00061 Score=42.83 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=81.0
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC---CC-------CCEEEEECCCEEEEEEEECCCCC-----------
Q ss_conf 9998799994489866931289999985402899---97-------52599706803337999489999-----------
Q 004554 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA-------LSSTVSSSKYRLRTSVLQAPHGD----------- 134 (745)
Q Consensus 76 ~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~---~~-------g~~tv~~~r~k~Rltfi~~~~~d----------- 134 (745)
.+-|+ |+|+|.++.+.. +| ++.+++... .. ..+..... ..+.++..+...
T Consensus 21 ~~~~~-I~lvG~~n~GKS-TL----in~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~ 91 (195)
T d1svia_ 21 GGLPE-IALAGRSNVGKS-SF----INSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp SCCCE-EEEEEBTTSSHH-HH----HHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHH
T ss_pred CCCCE-EEEECCCCCCHH-HH----HHHHCCCCCEEEEECCCCEEEECCCCCCC---CCCEEEEEEEECCCCCCCCCCCH
T ss_conf 89989-999899998799-99----99852987468860346512301211245---43137888751332112221110
Q ss_pred ----HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHHHHHH
Q ss_conf ----677876873203689984088853233332247579999999875099855897305996-313059999998742
Q 004554 135 ----LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISS 209 (745)
Q Consensus 135 ----l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~-~~kk~~~~kK~lk~~ 209 (745)
+...+..+..+|.|++++|++. ++..+..++++.|+..+.| ++.|+++.|. ...+..+..+.++..
T Consensus 92 ~~~~~~~~~~~~~~~~~vi~viD~~~--------~~~~~~~~~~~~l~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~ 162 (195)
T d1svia_ 92 WGRMIETYITTREELKAVVQIVDLRH--------APSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTS--------CCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCC--------CCCCCCCCCCCCCCCCCCC-CEECHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 36677654311211012222120145--------6421222110000025575-11000120325888899999999998
Q ss_pred CCCCCCCCCEEEEECC
Q ss_conf 0232589982698179
Q 004554 210 LTSEFPEDCKFYAADT 225 (745)
Q Consensus 210 f~~ef~~~~Klf~l~~ 225 (745)
+.. ..+..+|.+|.
T Consensus 163 l~~--~~~~~~~~~SA 176 (195)
T d1svia_ 163 LNI--DPEDELILFSS 176 (195)
T ss_dssp HTC--CTTSEEEECCT
T ss_pred HCC--CCCCCEEEEEC
T ss_conf 641--69997899968
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=97.64 E-value=0.0009 Score=41.64 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=73.4
Q ss_pred CEEEEEEEECCC--CCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-C--
Q ss_conf 033379994899--99677876873203689984088853233332247579999999875099855897305996-3--
Q 004554 121 YRLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-D-- 195 (745)
Q Consensus 121 ~k~Rltfi~~~~--~dl~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~-~-- 195 (745)
.+++++|+-||- .-+..|+-.+.+||.++||+||.. |+...+.+.|.++..-|++.+|.+++..|. +
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~--------G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY--------GVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT--------CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCEEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCC--------CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 52379998166325543332146655766898720456--------7663338999999983998799998700145552
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEE--EEECC
Q ss_conf 1305999999874202325899826--98179
Q 004554 196 LKKRKDLKKMCISSLTSEFPEDCKF--YAADT 225 (745)
Q Consensus 196 ~kk~~~~kK~lk~~f~~ef~~~~Kl--f~l~~ 225 (745)
...-...++.+..+++.-......+ .++|.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA 190 (222)
T d1zunb3 159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSA 190 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCT
T ss_pred CEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 00003567777655675204899608999775
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.57 E-value=0.0024 Score=38.73 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=72.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCC-----------------------CCC--CCEEEEECCCEEEEEEEECCCCC
Q ss_conf 79999448986693128999998540289-----------------------997--52599706803337999489999
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-----------------------TGA--LSSTVSSSKYRLRTSVLQAPHGD 134 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-----------------------~~~--g~~tv~~~r~k~Rltfi~~~~~d 134 (745)
|-|+|+|..+++.. +|...|+- +++.. .+. ++.++... ..+++||-|| +.
T Consensus 3 RNv~iiGh~~~GKT-tL~e~ll~-~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtP-Gh 77 (267)
T d2dy1a2 3 RTVALVGHAGSGKT-TLTEALLY-KTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAP-GY 77 (267)
T ss_dssp EEEEEEESTTSSHH-HHHHHHHH-HTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECC-CS
T ss_pred EEEEEECCCCCCHH-HHHHHHHH-HCCCCHHHCCCHHCCCCCCCHHHHHHHCCEEEEECCCCCCC--CCCEEEECCC-CH
T ss_conf 09999948898099-99999999-70975530662222113562698887387687510222234--3210688068-15
Q ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf ---677876873203689984088853233332247579999999875099855897305996
Q 004554 135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 135 ---l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~ 194 (745)
...++-+..+||.+|+++||..| +...|.+++..+..+|+|.++ +++.+|.
T Consensus 78 ~dF~~e~~~al~~~D~avlvvda~~G--------v~~~t~~~~~~~~~~~~p~~i-~iNk~D~ 131 (267)
T d2dy1a2 78 GDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLPRMV-VVTKLDK 131 (267)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEE-EEECGGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC--------CCCHHHHHHHHHHHCCCCCCC-CCCCCCC
T ss_conf 54335565431246733898423577--------421157887765540443101-3332022
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.54 E-value=0.0019 Score=39.34 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHC--CCC-C--CC--------CCEEEEECCCEEEEEEEECCC-C-CHHHHHHHHHHC
Q ss_conf 9999448986693128999998540--289-9--97--------525997068033379994899-9-967787687320
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLS--SEG-T--GA--------LSSTVSSSKYRLRTSVLQAPH-G-DLVGCMEMAKVA 145 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~--~~~-~--~~--------g~~tv~~~r~k~Rltfi~~~~-~-dl~~~LD~aKvA 145 (745)
-|+|+|.+..+.. +|.+.|++.-. ..+ . +. +...+... +.+++++.++. . =+..+..+.+.+
T Consensus 7 nIaiiG~~naGKS-TL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 7 NLGIFGHIDHGKT-TLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEECTTSSHH-HHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCHH-HHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9999907787099-99999997439562022330012133022230000137--85211012532232100012344302
Q ss_pred CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH-HHHHHHHHHHCCC--CCCCCCEEEE
Q ss_conf 368998408885323333224757999999987509985589730599631305-9999998742023--2589982698
Q 004554 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR-KDLKKMCISSLTS--EFPEDCKFYA 222 (745)
Q Consensus 146 DlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk~-~~~kK~lk~~f~~--ef~~~~Klf~ 222 (745)
|.+++++|++.| ....+.+.+..+..+|+| ++.|++.+|...... ......++..... .++ +..+|+
T Consensus 84 d~~ilv~d~~~g--------~~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iv~ 153 (179)
T d1wb1a4 84 DLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK-NSSIIP 153 (179)
T ss_dssp CEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG-GCCEEE
T ss_pred CCCCCCCCCCCC--------CCHHHHHHHHHHHHCCCC-CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 432121222221--------102345445555525976-2011232344577888889999999998750578-873899
Q ss_pred ECCHH--HHHHHHHHHH
Q ss_conf 17977--8999999986
Q 004554 223 ADTKD--ELHKFLWLFK 237 (745)
Q Consensus 223 l~~~~--e~~nL~R~I~ 237 (745)
+|..+ -+-.|+-.|.
T Consensus 154 iSA~~g~gi~eL~~~I~ 170 (179)
T d1wb1a4 154 ISAKTGFGVDELKNLII 170 (179)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 87667829999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=0.0033 Score=37.73 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=79.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCC----------------------CCC--CCEEEEECCCEEEEEEEECCC-CC
Q ss_conf 79999448986693128999998540289----------------------997--525997068033379994899-99
Q 004554 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG----------------------TGA--LSSTVSSSKYRLRTSVLQAPH-GD 134 (745)
Q Consensus 80 ~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~----------------------~~~--g~~tv~~~r~k~Rltfi~~~~-~d 134 (745)
|-|+|+|..+++.. +|...|+..-...+ .+. ...++.. .+.+++|+-+|- .|
T Consensus 7 Rni~i~gh~~~GKT-tL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 7 RNIGIAAHIDAGKT-TTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDAPGHVD 83 (276)
T ss_dssp EEEEEEECTTSCHH-HHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--TTEEEEEECCCSSSS
T ss_pred EEEEEEECCCCCHH-HHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECC--CCEEEEEECCCCHHH
T ss_conf 29999958989989-999999996485340233651846985658887518860011234315--983899952786022
Q ss_pred -HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf -6778768732036899840888532333322475799999998750998558973059963130599999987420
Q 004554 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL 210 (745)
Q Consensus 135 -l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk~~~~kK~lk~~f 210 (745)
+..++-+..+||.+|+++||..| ++-.|..+++.++.+|+|. |.+++.+|.....-..+...++..|
T Consensus 84 F~~e~~~~l~~~D~avlVvda~~G--------v~~~T~~~w~~a~~~~lP~-i~fINKmDr~~ad~~~~l~ei~~~l 151 (276)
T d2bv3a2 84 FTIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVPR-IAFANKMDKTGADLWLVIRTMQERL 151 (276)
T ss_dssp CSTTHHHHHHHCCEEEEEEETTTS--------SCHHHHHHHHHHHTTTCCE-EEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHEEEECCCCCC--------CCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 699999999963005773225677--------4466999999999859997-9998644565431212689999985
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=0.0039 Score=37.21 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCEEEEECCCEEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 525997068033379994899-99-6778768732036899840888532333322--4757999999987509985589
Q 004554 112 LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYY--IDSFGNQCLSVFRSLGLPSTAV 187 (745)
Q Consensus 112 g~~tv~~~r~k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~--fd~~g~e~L~~L~aqGlP~vig 187 (745)
+...+... +++++|+-||- .| +..|+-.+.+||.+|||+||..|.-+ .+ ..-.|.+.+..+..-|+|++|.
T Consensus 75 ~~~~~~~~--~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e---~g~~~~~QT~eh~~~~~~~gv~~iiv 149 (239)
T d1f60a3 75 ALWKFETP--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE---AGISKDGQTREHALLAFTLGVRQLIV 149 (239)
T ss_dssp SCEEEECS--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHH---HHTCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECCC--CEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCC---CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 20476249--98999998989688899999999975889999989988541---45573176999999999849980899
Q ss_pred EECCCCC-C-HHH-HHHHHHHHHHHCCC
Q ss_conf 7305996-3-130-59999998742023
Q 004554 188 LIRDLPT-D-LKK-RKDLKKMCISSLTS 212 (745)
Q Consensus 188 vl~~L~~-~-~kk-~~~~kK~lk~~f~~ 212 (745)
+++.+|. + .+. -..+++.++.++..
T Consensus 150 ~iNKmD~~~~d~~~~~~~~~el~~~l~~ 177 (239)
T d1f60a3 150 AVNKMDSVKWDESRFQEIVKETSNFIKK 177 (239)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9988878888889999999989999974
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.25 E-value=0.00043 Score=43.88 Aligned_cols=106 Identities=9% Similarity=0.108 Sum_probs=67.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCC----CCC--CCEEEE----------------ECCCEEEEEEEECCC-CC
Q ss_conf 9879999448986693128999998540289----997--525997----------------068033379994899-99
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG----TGA--LSSTVS----------------SSKYRLRTSVLQAPH-GD 134 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~----~~~--g~~tv~----------------~~r~k~Rltfi~~~~-~d 134 (745)
+|+ |+|+|-+..+.. +|.+.|++...... .+. +...+. ..-...+++|+-+|- .+
T Consensus 5 ~p~-IaIiGh~d~GKS-TL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 5 SPI-VSVLGHVDHGKT-TLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (227)
T ss_dssp CCE-EEEECSTTSSHH-HHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCE-EEEEECCCCCHH-HHHHHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEC
T ss_conf 987-999969985499-999999823660014574545315312321012234443321001101113422346411000
Q ss_pred -HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf -677876873203689984088853233332247579999999875099855897305996
Q 004554 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (745)
Q Consensus 135 -l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~ 194 (745)
...++-++..||+++||+||.. +++..+.+++..|..+|+| +|.|++.+|.
T Consensus 83 f~~~~~~~~~~~D~~ilVvda~~--------g~~~~~~~~~~~~~~~~~p-~iivlNK~D~ 134 (227)
T d1g7sa4 83 FTTLRKRGGALADLAILIVDINE--------GFKPQTQEALNILRMYRTP-FVVAANKIDR 134 (227)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTT--------CCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred CCCCCHHCCCCCCEEEEEEECCC--------CCCCCHHHHHHHHHCCCCE-EEEEEECCCC
T ss_conf 00111000124645899986123--------7632025777776437975-9999989307
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.13 E-value=0.0036 Score=37.46 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=78.7
Q ss_pred EEEEEEEECCCCC---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEECCCCC-CH
Q ss_conf 3337999489999---67787687320368998408885323333224-7579999999875099855897305996-31
Q 004554 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL 196 (745)
Q Consensus 122 k~Rltfi~~~~~d---l~~~LD~aKvADlVlllidas~g~~~~~~~~f-d~~g~e~L~~L~aqGlP~vigvl~~L~~-~~ 196 (745)
..+++|+-|| .. +..|+.++..||.+++++|+..| + ...+.+.+..++..|.|.++.+++..|. +.
T Consensus 77 ~~~~~~iDtP-Gh~~f~~~~~~~~~~~d~~ilvvda~~g--------~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 77 VRRVSFIDAP-GHEALMTTMLAGASLMDGAILVIAANEP--------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 147 (195)
T ss_dssp EEEEEEEECS-SHHHHHHHHHHCGGGCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred CEEEEEECCC-HHHHHHHHHHCCCCCCCCCCCCCCHHHH--------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 5047652431-0355667765332222331000011356--------665316799999998237552345412330246
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCH--HHHHHHHHHHH
Q ss_conf 305999999874202325899826981797--78999999986
Q 004554 197 KKRKDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFK 237 (745)
Q Consensus 197 kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~--~e~~nL~R~I~ 237 (745)
.+.....+.++.+++...+....++++|.. .-+-.|+-.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~ 190 (195)
T d1kk1a3 148 EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 190 (195)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 8888799999999630047988699987788979899999989
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.01 Score=34.40 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=86.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCC---------CCEEEEECCCEEEEEEEECCCC----C------HHHHHHH
Q ss_conf 9999448986693128999998540289997---------5259970680333799948999----9------6778768
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHG----D------LVGCMEM 141 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~Rltfi~~~~~----d------l~~~LD~ 141 (745)
.|+|+|.++.+.. || ++.+++.+... ............++.++..|-- . ....+.+
T Consensus 7 ~I~lvG~~~~GKS-SL----in~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1wf3a1 7 FVAIVGKPNVGKS-TL----LNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 81 (178)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 9999999999999-99----999968885033155773221121113320013553034431111222200001111222
Q ss_pred HHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 732036899840888532333322475799999998750998-5589730599631305999999874202325899826
Q 004554 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP-STAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (745)
Q Consensus 142 aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP-~vigvl~~L~~~~kk~~~~kK~lk~~f~~ef~~~~Kl 220 (745)
.+-||++|+++|++.+ +......++..|+..+-- .++.|++..|. .++.....+.++. .++ ..++
T Consensus 82 ~~~ad~il~v~D~~~~--------~~~~~~~i~~~l~~~~~~~piilv~NK~Dl-~~~~~~~~~~~~~----~~~-~~~~ 147 (178)
T d1wf3a1 82 LADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVPILLVGNKLDA-AKYPEEAMKAYHE----LLP-EAEP 147 (178)
T ss_dssp TSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSCEEEEEECGGG-CSSHHHHHHHHHH----TST-TSEE
T ss_pred CCCCCCEEEEECHHHH--------HCCCCCCHHHHEECCCCCHHHHHHHCCCCC-CCCHHHHHHHHHH----HCC-CCCE
T ss_conf 2332003565512663--------013211201210012322022220001600-0188999999986----214-6865
Q ss_pred EEECC--HHHHHHHHHHHHHCCC
Q ss_conf 98179--7789999999863254
Q 004554 221 YAADT--KDELHKFLWLFKEQRL 241 (745)
Q Consensus 221 f~l~~--~~e~~nL~R~I~~~k~ 241 (745)
|.+|. ...+..|+..|...-|
T Consensus 148 ~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 148 RMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99966789799999999998488
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.017 Score=32.79 Aligned_cols=127 Identities=10% Similarity=0.092 Sum_probs=78.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC---C----------CCEEEEECCCEEEEEEEE--------------CC
Q ss_conf 87999944898669312899999854028999---7----------525997068033379994--------------89
Q 004554 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A----------LSSTVSSSKYRLRTSVLQ--------------AP 131 (745)
Q Consensus 79 P~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~---~----------g~~tv~~~r~k~Rltfi~--------------~~ 131 (745)
.+-|+|+|.++.+.. +| +..+++.+.. . +.++. . ...++++. ..
T Consensus 8 ~~kV~iiG~~~~GKS-TL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~--~--~~~~~~~d~~g~~~~~~~~~~~~~ 78 (186)
T d1mkya2 8 AIKVAIVGRPNVGKS-TL----FNAILNKERALVSPIPGTTRDPVDDEVFI--D--GRKYVFVDTAGLRRKSRVEPRTVE 78 (186)
T ss_dssp CEEEEEECSTTSSHH-HH----HHHHHTSTTEEECCCC------CCEEEEE--T--TEEEEESSCSCC-----------C
T ss_pred CCEEEEECCCCCCHH-HH----HHHHHCCCCCEEECCCCCCCCCCEEEECC--C--CCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 888999999999999-99----99997787622422565433320012204--9--923465236885101221222210
Q ss_pred CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHHHHHH
Q ss_conf 999677876873203689984088853233332247579999999875099855897305996---31305999999874
Q 004554 132 HGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DLKKRKDLKKMCIS 208 (745)
Q Consensus 132 ~~dl~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~---~~kk~~~~kK~lk~ 208 (745)
......++...+.||++++++|++.+ +..+..++++.+...|.|. |.|++..|. ..++.....+.++.
T Consensus 79 ~~~~~~~~~~~~~~dvii~v~d~~~~--------~~~~~~~~~~~~~~~~~~~-i~v~nK~D~~~~~~~~~~~~~~~~~~ 149 (186)
T d1mkya2 79 KYSNYRVVDSIEKADVVVIVLDATQG--------ITRQDQRMAGLMERRGRAS-VVVFNKWDLVVHREKRYDEFTKLFRE 149 (186)
T ss_dssp CSCCHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSTTGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCC--------CHHHHHHHHHHHHHCCCCE-EEECCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 00117789898609999996034565--------0266889999999708860-53001000110101102568999998
Q ss_pred HCCCCCCCCCEEEEECC
Q ss_conf 20232589982698179
Q 004554 209 SLTSEFPEDCKFYAADT 225 (745)
Q Consensus 209 ~f~~ef~~~~Klf~l~~ 225 (745)
.++. .....+|++|.
T Consensus 150 ~~~~--~~~~~i~~vSa 164 (186)
T d1mkya2 150 KLYF--IDYSPLIFTSA 164 (186)
T ss_dssp HCGG--GTTSCEEECBT
T ss_pred HHCC--CCCCEEEEEEC
T ss_conf 8511--68980899867
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.13 E-value=0.036 Score=30.55 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=81.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCC--------CCEEEEECCCEEEEEEEECCCC-C----------------H
Q ss_conf 9999448986693128999998540289997--------5259970680333799948999-9----------------6
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHG-D----------------L 135 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~--------g~~tv~~~r~k~Rltfi~~~~~-d----------------l 135 (745)
-|+++|+++.+.. +| +..+++..... .+..+.. .++.|+-.|-- . .
T Consensus 2 ~I~lvG~~nvGKS-sL----in~l~~~~~~~~~~~g~T~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 72 (184)
T d2cxxa1 2 TIIFAGRSNVGKS-TL----IYRLTGKKVRRGKRPGVTRKIIEIEW----KNHKIIDMPGFGFMMGLPKEVQERIKDEIV 72 (184)
T ss_dssp EEEEEEBTTSSHH-HH----HHHHHSCCCSSSSSTTCTTSCEEEEE----TTEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCEEECCCCEEECCCCCCC----CCCEECCCCCCEECCCCCCCCCCCCCHHHH
T ss_conf 8999999998899-99----99996898535278977204542442----231100367750012111112222102456
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCC---CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 77876873203689984088853233---332247579999999875099855897305996313059999998742023
Q 004554 136 VGCMEMAKVADLVAFVASASSFSEES---MSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS 212 (745)
Q Consensus 136 ~~~LD~aKvADlVlllidas~g~~~~---~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk~~~~kK~lk~~f~~ 212 (745)
....+..+-+|++++++|++...... ...++.....+++..|...|.| ++.|++..|. .+........+...+..
T Consensus 73 ~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p-~iiv~NK~D~-~~~~~~~~~~~~~~~~~ 150 (184)
T d2cxxa1 73 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDK-IKNVQEVINFLAEKFEV 150 (184)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGG-CSCHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCCHHEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCC-EEEEEEEEEH-HHHHHHHHHHHHHHHCC
T ss_conf 666530111330026642235510111343313207789999999984998-8998764322-43578899999998456
Q ss_pred CCCC-CCEEEEECCHH--HHHHHHHHHHH
Q ss_conf 2589-98269817977--89999999863
Q 004554 213 EFPE-DCKFYAADTKD--ELHKFLWLFKE 238 (745)
Q Consensus 213 ef~~-~~Klf~l~~~~--e~~nL~R~I~~ 238 (745)
.+.. ...++++|..+ -+..|...|+.
T Consensus 151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~ 179 (184)
T d2cxxa1 151 PLSEIDKVFIPISAKFGDNIERLKNRIFE 179 (184)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 51126873899977889899999999998
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.053 Score=29.37 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=57.9
Q ss_pred EEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC---CH
Q ss_conf 33379994899-99-677876873203689984088853233332247579999999875099855897305996---31
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DL 196 (745)
Q Consensus 122 k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~---~~ 196 (745)
..+++||-+|- .| +..+.-+..+||.+|+++||.. |+...|.+++..+...|+|.++.+ +.+|. ++
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e--------Gv~~qT~~~~~~a~~~~~p~i~vi-NKiDr~~~el 165 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE--------GVCVQTETVLRQALGERIKPVVVI-NKVDRALLEL 165 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT--------BSCHHHHHHHHHHHHTTCEEEEEE-ECHHHHHHTS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCC--------CCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCH
T ss_conf 5379997378738899999988752372499986566--------820469999999987699869998-7726555427
Q ss_pred HH-HHHHHHHHHHHC
Q ss_conf 30-599999987420
Q 004554 197 KK-RKDLKKMCISSL 210 (745)
Q Consensus 197 kk-~~~~kK~lk~~f 210 (745)
+. ..+....+.+.+
T Consensus 166 ~~~~~~~~~~l~~~i 180 (341)
T d1n0ua2 166 QVSKEDLYQTFARTV 180 (341)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 766999999975765
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.72 E-value=0.022 Score=32.00 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=64.8
Q ss_pred EEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC---CH
Q ss_conf 33379994899-99-677876873203689984088853233332247579999999875099855897305996---31
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DL 196 (745)
Q Consensus 122 k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~---~~ 196 (745)
.++++|+-||- .| +..|+..+.+||.++|++||..|..+. ...+.-.+.+.|..+...|+|.++.+++.+|. +.
T Consensus 101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~-~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~ 179 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEA-GFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 179 (245)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHH-TTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 310355425555442366652144303004678747776677-6533202299999999859995999997688775312
Q ss_pred H--HHHHHHHHHHHHCCCC
Q ss_conf 3--0599999987420232
Q 004554 197 K--KRKDLKKMCISSLTSE 213 (745)
Q Consensus 197 k--k~~~~kK~lk~~f~~e 213 (745)
. +..++++.++.++...
T Consensus 180 ~e~~~~ei~~~l~~~l~~i 198 (245)
T d1r5ba3 180 SEERYKECVDKLSMFLRRV 198 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 1788999999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.92 E-value=0.1 Score=27.36 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=71.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCC---C------CCEEEEECCCEEEEEEEECCC--------C---CHHHHHH
Q ss_conf 999944898669312899999854028999---7------525997068033379994899--------9---9677876
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKYRLRTSVLQAPH--------G---DLVGCME 140 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~---~------g~~tv~~~r~k~Rltfi~~~~--------~---dl~~~LD 140 (745)
.|+|+|+++.+.. +| ++.+++.+.. . ..+..........+.+...+. . -....+.
T Consensus 2 ~V~liG~~n~GKS-sL----i~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKS-TL----FNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHH-HH----HHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 8999999999899-99----999967775303144763531322212212211111245421321012233222200002
Q ss_pred HHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCE
Q ss_conf 8732036899840888532333322475799999998750998558973059963130-599999987420232589982
Q 004554 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFPEDCK 219 (745)
Q Consensus 141 ~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk-~~~~kK~lk~~f~~ef~~~~K 219 (745)
+..-||+++++++++. ++.....+++..|+.+|.| ++.|++..|. .++ ..+..+.+ ... . ...
T Consensus 77 ~~~~ad~i~~~~~~~~--------~~~~~~~~~~~~l~~~~~p-viiv~NK~Dl-~~~~~~~~~~~~----~~~-~-~~~ 140 (171)
T d1mkya1 77 MIREADLVLFVVDGKR--------GITKEDESLADFLRKSTVD-TILVANKAEN-LREFEREVKPEL----YSL-G-FGE 140 (171)
T ss_dssp HHTTCSEEEEEEETTT--------CCCHHHHHHHHHHHHHTCC-EEEEEESCCS-HHHHHHHTHHHH----GGG-S-SCS
T ss_pred CCCCCCEEEEEECCCC--------CCCCCCCCCCCCCCCCCCC-CCCCCHHHHH-HHHHHHHHHHHH----HHC-C-CCC
T ss_conf 3555718999601121--------1222211112222222211-0013102334-556566788999----861-8-997
Q ss_pred EEEECC
Q ss_conf 698179
Q 004554 220 FYAADT 225 (745)
Q Consensus 220 lf~l~~ 225 (745)
++++|.
T Consensus 141 ~i~iSA 146 (171)
T d1mkya1 141 PIPVSA 146 (171)
T ss_dssp CEECBT
T ss_pred EEEEEC
T ss_conf 699966
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.72 E-value=0.1 Score=27.37 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=67.6
Q ss_pred EEEEEEEECCC-CC-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC----
Q ss_conf 33379994899-99-6778768732036899840888532333322475799999998750998558973059963----
Q 004554 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD---- 195 (745)
Q Consensus 122 k~Rltfi~~~~-~d-l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~---- 195 (745)
++.++||-||- .| +..|+-++.+||.+|||+||..|.... ...+...+.|.|.++.+.|++.+|.+++.+|..
T Consensus 80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~-t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA-GMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHH-HHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCC-CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 812687518984878999999997506579987415575454-2244422499999999809983489998035777531
Q ss_pred -HHHHHHHHHHHHHHCCCC--CCCCCEEEEEC
Q ss_conf -130599999987420232--58998269817
Q 004554 196 -LKKRKDLKKMCISSLTSE--FPEDCKFYAAD 224 (745)
Q Consensus 196 -~kk~~~~kK~lk~~f~~e--f~~~~Klf~l~ 224 (745)
..+...+...++.++... .+....+.+++
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPIS 190 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV 190 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 17888877999876787618985667099977
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.36 E-value=0.53 Score=22.43 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=70.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCC--CC-------C--CEEEEECCCEEEEEEEECCC---------C--CHHHH
Q ss_conf 99994489866931289999985402899--97-------5--25997068033379994899---------9--96778
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT--GA-------L--SSTVSSSKYRLRTSVLQAPH---------G--DLVGC 138 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~--~~-------g--~~tv~~~r~k~Rltfi~~~~---------~--dl~~~ 138 (745)
=|+++|.++.+.. || +..++.... .. . ...+... ...++++..|- + .+...
T Consensus 2 kI~liG~~n~GKS-SL----in~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 74 (160)
T d1xzpa2 2 RMVIVGKPNVGKS-TL----LNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERT 74 (160)
T ss_dssp EEEEECCHHHHTC-HH----HHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCEEEECCCCCCCCCEEEEEEEC--CEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8999999999999-99----999958996355303563211104799758--9058861666612577007788999999
Q ss_pred HHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCC
Q ss_conf 7687320368998408885323333224757999999987509985589730599631305-999999874202325899
Q 004554 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR-KDLKKMCISSLTSEFPED 217 (745)
Q Consensus 139 LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~~~kk~-~~~kK~lk~~f~~ef~~~ 217 (745)
+..++.||++++++|++.+ ..++..++...+ .-..++.+++..|...+.. .+.... +..+
T Consensus 75 ~~~~~~ad~ii~v~d~~~~--------~~~~~~~~~~~~---~~~~~i~~~~k~d~~~~~~~~~~~~~--------~~~~ 135 (160)
T d1xzpa2 75 LQEIEKADIVLFVLDASSP--------LDEEDRKILERI---KNKRYLVVINKVDVVEKINEEEIKNK--------LGTD 135 (160)
T ss_dssp HHHHHHCSEEEEEEETTSC--------CCHHHHHHHHHH---TTSSEEEEEEECSSCCCCCHHHHHHH--------HTCS
T ss_pred HHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHC---CCCCCEEEEEECCCCCHHHHHHHHHH--------HCCC
T ss_conf 9999869999999747888--------625666653312---24310023430134330346999998--------4799
Q ss_pred CEEEEECCHH--HHHHHHHHH
Q ss_conf 8269817977--899999998
Q 004554 218 CKFYAADTKD--ELHKFLWLF 236 (745)
Q Consensus 218 ~Klf~l~~~~--e~~nL~R~I 236 (745)
..+|.+|..+ .+-.|...|
T Consensus 136 ~~~~~vSA~~g~gi~~L~~~I 156 (160)
T d1xzpa2 136 RHMVKISALKGEGLEKLEESI 156 (160)
T ss_dssp TTEEEEEGGGTCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 967999788998999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.68 E-value=0.95 Score=20.68 Aligned_cols=137 Identities=7% Similarity=0.077 Sum_probs=73.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCC--C----CC----CCEEEEECCCEEEEEEEECCC-CCHHHHHHH-HHHCCEEE
Q ss_conf 999448986693128999998540289--9----97----525997068033379994899-996778768-73203689
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEG--T----GA----LSSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA 149 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~--~----~~----g~~tv~~~r~k~Rltfi~~~~-~dl~~~LD~-aKvADlVl 149 (745)
|+|+|.++.+.. +| +..|.... . .. ....+.......+++|+..+. ....++... .+-||.++
T Consensus 8 i~vvG~~~vGKT-sL----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i 82 (169)
T d3raba_ 8 ILIIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169)
T ss_dssp EEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred EEEECCCCCCHH-HH----HHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 999999991989-99----9999739888651455553104689986243699999989985545889999974387789
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHH---HHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 98408885323333224757999999987509--98558973059963130---59999998742023258998269817
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD 224 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~~g~e~L~~L~aqG--lP~vigvl~~L~~~~kk---~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (745)
+++|.+.. ..++.. .+.+..++.+. -+.++.|.+..|...++ ....++..+.. +.+.|..|
T Consensus 83 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~-------~~~~~e~S 148 (169)
T d3raba_ 83 LMYDITNE------ESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-------GFEFFEAS 148 (169)
T ss_dssp EEEETTCH------HHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECB
T ss_pred EEEECCCC------HHHHHH-HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHC-------CCEEEEEC
T ss_conf 99978110------434312-34433210236775248899731142223321103667799875-------98899956
Q ss_pred C-----HHHH-HHHHHHHH
Q ss_conf 9-----7789-99999986
Q 004554 225 T-----KDEL-HKFLWLFK 237 (745)
Q Consensus 225 ~-----~~e~-~nL~R~I~ 237 (745)
. -.|+ ..|++.|.
T Consensus 149 ak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 149 AKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 9999599999999999996
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=84.68 E-value=0.95 Score=20.68 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=73.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCC---------CCEEEEECCCEEEEEEEECCC---------CCHHHHHHHHH
Q ss_conf 999448986693128999998540289997---------525997068033379994899---------99677876873
Q 004554 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPH---------GDLVGCMEMAK 143 (745)
Q Consensus 82 V~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~---------g~~tv~~~r~k~Rltfi~~~~---------~dl~~~LD~aK 143 (745)
|+++|.++.+.. +| +..|++.+... ..+.+.......+++|+--|- .-...++....
T Consensus 4 VaivG~~nvGKS-TL----in~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~ 78 (180)
T d1udxa2 4 VGLVGYPNAGKS-SL----LAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 78 (180)
T ss_dssp EEEECCGGGCHH-HH----HHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred EEEECCCCCCHH-HH----HHHHHCCCCCEECCCCCCEEEEECEEEECCCCEEEECCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 999899999899-99----9999689971534689716665641552378748982888065275177799999999877
Q ss_pred HCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 203689984088853233332247579999999--875099855897305996313059999998742023258998269
Q 004554 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSV--FRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY 221 (745)
Q Consensus 144 vADlVlllidas~g~~~~~~~~fd~~g~e~L~~--L~aqGlP~vigvl~~L~~~~kk~~~~kK~lk~~f~~ef~~~~Klf 221 (745)
.+|+++++++++.... ..++.+ ...+.. ...++.| ++.|++..|...+. .. +.++..+.. .+.++|
T Consensus 79 ~~~~~~~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~--~~-~~~~~~~~~---~~~~~~ 146 (180)
T d1udxa2 79 RTRVLLYVLDAADEPL----KTLETL-RKEVGAYDPALLRRP-SLVALNKVDLLEEE--AV-KALADALAR---EGLAVL 146 (180)
T ss_dssp SSSEEEEEEETTSCHH----HHHHHH-HHHHHHHCHHHHHSC-EEEEEECCTTSCHH--HH-HHHHHHHHT---TTSCEE
T ss_pred HHHHHHHHCCCCCCCC----CCHHHH-HHHHHCCCCCCCHHH-HHHHHHHHHHHHHH--HH-HHHHHHHHH---CCCEEE
T ss_conf 5345665300124653----210133-444311220001021-10115566555277--89-999999975---698389
Q ss_pred EECCHH--HHHHHHHHH
Q ss_conf 817977--899999998
Q 004554 222 AADTKD--ELHKFLWLF 236 (745)
Q Consensus 222 ~l~~~~--e~~nL~R~I 236 (745)
.+|..+ -+-.|...|
T Consensus 147 ~iSA~tg~gid~L~~~i 163 (180)
T d1udxa2 147 PVSALTGAGLPALKEAL 163 (180)
T ss_dssp ECCTTTCTTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99767888999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.90 E-value=1 Score=20.45 Aligned_cols=147 Identities=10% Similarity=0.089 Sum_probs=77.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-----CCEEEEECCCEEEEEEEECCCCCH-HH-HHHHHHHCCEEEE
Q ss_conf 9879999448986693128999998540289997-----525997068033379994899996-77-8768732036899
Q 004554 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGDL-VG-CMEMAKVADLVAF 150 (745)
Q Consensus 78 pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~-----g~~tv~~~r~k~Rltfi~~~~~dl-~~-~LD~aKvADlVll 150 (745)
-..=|+|+|.++.+.. +| +..|....... |...........++.+..++...- .. .-...+-||.+++
T Consensus 15 ~~~kI~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 89 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKT-TL----LKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (176)
T ss_dssp SCEEEEEEESTTSSHH-HH----HHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CEEEEEEECCCCCCHH-HH----HHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 8779999999998999-99----999964877752023310589850488567676325421001477887641552688
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHH---HCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-
Q ss_conf 8408885323333224757999999987---5099855897305996-3130599999987420232589982698179-
Q 004554 151 VASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT- 225 (745)
Q Consensus 151 lidas~g~~~~~~~~fd~~g~e~L~~L~---aqGlP~vigvl~~L~~-~~kk~~~~kK~lk~~f~~ef~~~~Klf~l~~- 225 (745)
++|.+.. ..|+.....+...+. ..+.| ++.|++..|. +........+.+.-.+-.. ....+|..|.
T Consensus 90 v~d~~d~------~s~~~~~~~~~~~~~~~~~~~~p-illv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~ 160 (176)
T d1fzqa_ 90 VIDSADR------KRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPASEIAEGLNLHTIRD--RVWQIQSCSAL 160 (176)
T ss_dssp EEETTCG------GGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCTT
T ss_pred EECCCCC------CCHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECC
T ss_conf 6204565------42444445544334430369985-999997405454242899999987877773--69889998699
Q ss_pred -HHHHHHHHHHHHH
Q ss_conf -7789999999863
Q 004554 226 -KDELHKFLWLFKE 238 (745)
Q Consensus 226 -~~e~~nL~R~I~~ 238 (745)
..-+..++..|+.
T Consensus 161 tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 161 TGEGVQDGMNWVCK 174 (176)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 89899999999996
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.55 E-value=1.1 Score=20.36 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCC------CCEEEEECCCEEEEEEEECCCCCH---HHHHHHHHHCCEEEEE
Q ss_conf 9999448986693128999998540289997------525997068033379994899996---7787687320368998
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA------LSSTVSSSKYRLRTSVLQAPHGDL---VGCMEMAKVADLVAFV 151 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~------g~~tv~~~r~k~Rltfi~~~~~dl---~~~LD~aKvADlVlll 151 (745)
=|+++|+++++.. +| +.+|+...... |...........++.++..+ +.. .......+-||.++++
T Consensus 4 ki~i~G~~~~GKT-sL----l~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~-G~~~~~~~~~~~~~~~~~~i~v 77 (164)
T d1zd9a1 4 ELTLVGLQYSGKT-TF----VNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG-GQPRFRSMWERYCRGVSAIVYM 77 (164)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEEC-CSHHHHTTHHHHHTTCSEEEEE
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCHHHCC
T ss_conf 9999999998989-99----9999719788740564102442454226888884010-0012112222222233101101
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CEEEEECCCCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEECCH--
Q ss_conf 40888532333322475799999998750998--558973059963-1305999999874202325899826981797--
Q 004554 152 ASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPTD-LKKRKDLKKMCISSLTSEFPEDCKFYAADTK-- 226 (745)
Q Consensus 152 idas~g~~~~~~~~fd~~g~e~L~~L~aqGlP--~vigvl~~L~~~-~kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~-- 226 (745)
+|++.. ..|+..-..+..+++....+ .++.|.++.|.. .....++.+.+...+... .+..+|..|..
T Consensus 78 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~--~~~~~~e~Sa~~g 149 (164)
T d1zd9a1 78 VDAADQ------EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD--REICCYSISCKEK 149 (164)
T ss_dssp EETTCG------GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCTTTC
T ss_pred CCCCCC------CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCC
T ss_conf 332122------11100246666655442146985899985256301256788999999998885--7998999858579
Q ss_pred HHHHHHHHHHHH
Q ss_conf 789999999863
Q 004554 227 DELHKFLWLFKE 238 (745)
Q Consensus 227 ~e~~nL~R~I~~ 238 (745)
..+..+++.|..
T Consensus 150 ~gv~e~~~~l~~ 161 (164)
T d1zd9a1 150 DNIDITLQWLIQ 161 (164)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 499999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=80.68 E-value=1.3 Score=19.66 Aligned_cols=152 Identities=11% Similarity=0.031 Sum_probs=76.5
Q ss_pred HHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC----CCE-----E-EEECCCEEEEEEEECCC----
Q ss_conf 310147899999879999448986693128999998540289997----525-----9-97068033379994899----
Q 004554 67 KEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----LSS-----T-VSSSKYRLRTSVLQAPH---- 132 (745)
Q Consensus 67 ~~~R~~~~~~~pP~iV~Vv~l~~~~~~~sl~~~~vk~~~~~~~~~----g~~-----t-v~~~r~k~Rltfi~~~~---- 132 (745)
..++.+. +..|+ |+++|.++.+.. +| ++.++...... .+. . +.......-+.+..+..
T Consensus 7 ~~~~~p~--~~~~~-I~lvG~~NvGKS-SL----~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (188)
T d1puia_ 7 DIRHLPS--DTGIE-VAFAGRSNAGKS-SA----LNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78 (188)
T ss_dssp SGGGSSC--SCSEE-EEEEECTTSSHH-HH----HTTTCCC-------------CCEEEEEEETTEEEEECCCCC-----
T ss_pred CHHHCCC--CCCCE-EEEECCCCCCHH-HH----HHHHHCCCCEEEECCCCCCEEECCCEECCCCCCEEEEECCCCCCHH
T ss_conf 8567997--66978-999889999899-99----9998589854754566650231110111465420342001221102
Q ss_pred -CC-------HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHH
Q ss_conf -99-------677876873203689984088853233332247579999999875099855897305996-313059999
Q 004554 133 -GD-------LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLK 203 (745)
Q Consensus 133 -~d-------l~~~LD~aKvADlVlllidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~vigvl~~L~~-~~kk~~~~k 203 (745)
.. ....+..+..++.++.+.++.. .......+++..+..++.+.++ +++..|. +........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-v~~k~D~~~~~~~~~~~ 149 (188)
T d1puia_ 79 EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH--------PLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQL 149 (188)
T ss_dssp -CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS--------CCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC--------CCHHHHHHHHHHHHHCCCCCCC-HHHHHHCCCHHHHHHHH
T ss_conf 44544444555655654200358998401223--------3126777888876403322201-11333115888899999
Q ss_pred HHHHHHCCCCCCCCCEEEEECCH--HHHHHHHHHH
Q ss_conf 99874202325899826981797--7899999998
Q 004554 204 KMCISSLTSEFPEDCKFYAADTK--DELHKFLWLF 236 (745)
Q Consensus 204 K~lk~~f~~ef~~~~Klf~l~~~--~e~~nL~R~I 236 (745)
+.++..+..+.+ ..+++.+|.. .-+-.|...|
T Consensus 150 ~~~~~~l~~~~~-~~~~i~vSA~~g~Gid~L~~~i 183 (188)
T d1puia_ 150 NMVREAVLAFNG-DVQVETFSSLKKQGVDKLRQKL 183 (188)
T ss_dssp HHHHHHHGGGCS-CEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHH
T ss_conf 999999986089-9818999679998899999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.34 E-value=1.4 Score=19.58 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=60.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCC-C-----CC---CCEEEEECCCEEEEEEEECCC-CCHHHHH-HHHHHCCEEE
Q ss_conf 9999448986693128999998540289-9-----97---525997068033379994899-9967787-6873203689
Q 004554 81 VIVLFGLSASVNLNSVREDLLRQLSSEG-T-----GA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVA 149 (745)
Q Consensus 81 iV~Vv~l~~~~~~~sl~~~~vk~~~~~~-~-----~~---g~~tv~~~r~k~Rltfi~~~~-~dl~~~L-D~aKvADlVl 149 (745)
=|+|+|.++.+.. || +.+|.... . +. ....+......-++.++..+. ....++. ...+-||.++
T Consensus 5 KivvvG~~~vGKT-sl----i~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (167)
T d1c1ya_ 5 KLVVLGSGGVGKS-AL----TVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 9999998998999-99----999970989875587502111036886226887400024675223445431122355358
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--EEEEECCCCC
Q ss_conf 98408885323333224757999999987509985--5897305996
Q 004554 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT 194 (745)
Q Consensus 150 llidas~g~~~~~~~~fd~~g~e~L~~L~aqGlP~--vigvl~~L~~ 194 (745)
+++|.+.. ..|+.....+..+++..+.+. ++.|.+..|.
T Consensus 80 lv~d~~~~------~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl 120 (167)
T d1c1ya_ 80 LVYSITAQ------STFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp EEEETTCH------HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 85210434------666767999999988517889709999984375
|