BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004556
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 7 GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNA 66
G++ H+P+RDSKLTR+LQ SLGGNA+T ++ + PA +VE++ TL +A+ AK +
Sbjct: 298 GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKP 357
Query: 67 QVNIVMSDKALVKHLQ 82
+VN D AL++ Q
Sbjct: 358 RVNEDPKD-ALLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R+ H+P+RDSKLTR+LQ SLGGNA+T ++ TL PA ++S +TL FA+ AK + +
Sbjct: 323 RSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPR 382
Query: 68 VN 69
VN
Sbjct: 383 VN 384
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 364
Query: 68 VN 69
VN
Sbjct: 365 VN 366
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 7 GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNA 66
G++ HVP+RDSKLTRILQ SLGGN+RT +I SP+ + ++ +TL F AK + A
Sbjct: 275 GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKA 334
Query: 67 QVNIVMSDKALVKHLQR 83
+VN +S L + L +
Sbjct: 335 KVNAELSPAELKQMLAK 351
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 364
Query: 68 VN 69
VN
Sbjct: 365 VN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 307 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 366
Query: 68 VN 69
VN
Sbjct: 367 VN 368
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 364
Query: 68 VN 69
VN
Sbjct: 365 VN 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 364
Query: 68 VN 69
VN
Sbjct: 365 VN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 364
Query: 68 VN 69
VN
Sbjct: 365 VN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 304 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 363
Query: 68 VN 69
VN
Sbjct: 364 VN 365
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +
Sbjct: 296 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPE 355
Query: 68 VN 69
VN
Sbjct: 356 VN 357
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 17/103 (16%)
Query: 5 SKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTT 64
++G HVP+RDSK+TRILQ SLGGN RT I+ SP+ + ++++TL+F AK +
Sbjct: 15 AEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKN 74
Query: 65 NAQVNIVMS-----------------DKALVKHLQRELSRLEN 90
VN+ ++ K++++HL+ EL+R N
Sbjct: 75 TVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 7 GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNA 66
G H+P+RDSKLTRILQ SLGGNART I+ SPA + ++++TL F AK V
Sbjct: 278 GNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVV 337
Query: 67 QVN 69
VN
Sbjct: 338 CVN 340
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67
R HVP+R+SKLTR+LQ SLGG +T+II T+SP +E++ +TL +A AK + +
Sbjct: 307 RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366
Query: 68 VN 69
VN
Sbjct: 367 VN 368
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62
R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK +
Sbjct: 290 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 70
+VP+RDSK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK + VN+
Sbjct: 274 YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
Query: 71 VMS 73
++
Sbjct: 334 ELT 336
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 70
+VP+RDSK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK + VN+
Sbjct: 274 YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
Query: 71 VMS 73
++
Sbjct: 334 ELT 336
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 9 NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 68
G + +RDSKLTRILQ+SLGGNA+T IICT++P +++ L FAS AK + V
Sbjct: 277 GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYV 334
Query: 69 NIVMSDK 75
N V +D+
Sbjct: 335 NEVSTDE 341
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 44/59 (74%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69
H+P+RDSKLTR+LQ SLGGN++T + +SPA ++ +++ +TL +A AK++ ++N
Sbjct: 284 HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
R H+P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 292 RGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 5 SKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTT 64
++G HVP+RDSK+TRILQ SL GN RT I+ SP+ + ++++TL+F AK +
Sbjct: 19 AEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKN 78
Query: 65 NAQVNI 70
VN+
Sbjct: 79 TVSVNL 84
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62
+VP+RDSK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK +
Sbjct: 274 YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 5 SKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62
SK +N H+P+R+SKLTR+L+ SLGGN +T +I +SP+ + + NTL +A+ AK++
Sbjct: 298 SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 9 NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 68
N H+P+R+ KLT ++ SLGGNA+T + +SPA S+++++ N+L +AS + + +
Sbjct: 274 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK 333
Query: 69 NIVMSDKALVKHL 81
N+ + A +K L
Sbjct: 334 NVSSKEVARLKKL 346
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 9 NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 68
N H+P+R+ KLT ++ SLGGNA+T + +SPA S+++++ N+LL+AS + + +
Sbjct: 282 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSK 341
Query: 69 NIVMSDKALVK 79
+I S K +V+
Sbjct: 342 HI--SSKEMVR 350
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
R ++P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 292 RGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%)
Query: 12 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIV 71
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ VN+
Sbjct: 320 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNLE 379
Query: 72 MS 73
++
Sbjct: 380 LT 381
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 4 CSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
K +N VP+RDS LT +L+ SLGGN++TA++ T+SPA + +++ +TL +A AK
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 289 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 335
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 12 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 301 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 347
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 12 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 12 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIV 71
VP+RDSKLTR+LQ SLGG+A + +I ++P R + + L FA+ +KEV N
Sbjct: 297 VPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNES 356
Query: 72 MSDKAL--VKHLQREL 85
+ AL VK Q+EL
Sbjct: 357 LQPHALGPVKLSQKEL 372
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 12 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 7/75 (9%)
Query: 2 VECSKGR-----NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFA 56
V+ +GR N VP+RDS LT +L+ SLGGN++TA+I +SP + +++ +TL +A
Sbjct: 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYA 407
Query: 57 SCAKEVTTNAQVNIV 71
AK + T A VN V
Sbjct: 408 DQAKRIRTRAVVNQV 422
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 7 GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
G+ H+PFR+SKLT +LQ SL G+++T + +SPA H+ ++ N+L FAS
Sbjct: 310 GQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 3 ECSK--GRNG-HVPFRDSKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASC 58
EC + GRN H PFR SKLT++L+ S +G N+RT +I T+SP + E + NTL +A+
Sbjct: 357 ECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANR 416
Query: 59 AKEV 62
KE+
Sbjct: 417 VKEL 420
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
HVP+R+SKLT +LQ+SLGG+A+ + +SP +V +S N+L FAS
Sbjct: 325 HVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFAS 371
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
++ + R GHVPFR+SKLT +LQ SL G+++T ++ +SP + ++ +L FA +
Sbjct: 267 VIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 326
Query: 61 EV 62
V
Sbjct: 327 SV 328
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 3 ECSK--GRN-GHVPFRDSKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASC 58
EC + G+N H PFR+SKLT++L+ S +G N+RT +I T+SP S E + NTL +A
Sbjct: 319 ECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADR 378
Query: 59 AKEVT 63
KE++
Sbjct: 379 VKELS 383
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
HVP+R+SKLT +L+ SLGGN++T + +SP + ++ N+L FA+
Sbjct: 660 HVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 3 ECSK--GRN-GHVPFRDSKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASC 58
EC + G+N H PFR+SKLT++L+ S +G N+RT +I +SP S E + NTL +A
Sbjct: 339 ECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 398
Query: 59 AKEVT 63
KE++
Sbjct: 399 VKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 3 ECSK--GRN-GHVPFRDSKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASC 58
EC + G+N H PFR+SKLT++L+ S +G N+RT +I +SP S E + NTL +A
Sbjct: 267 ECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 326
Query: 59 AKEVT 63
KE++
Sbjct: 327 VKELS 331
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
H+PFRDS+LT++L+ G +++ +I +SP S EQ+ NTL ++S K
Sbjct: 280 HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
+ H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 325 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 325 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 371
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 331 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 377
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 339 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 385
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 57
++PFR+SKLT +LQ SL G+++T + + P +H+ ++ N+L FAS
Sbjct: 293 YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 11 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62
H+PFR KLT L+ SLGGN ++ + + +E++ ++L FAS K V
Sbjct: 308 HIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 10 GH--VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62
GH +P+RDS LT +LQ+SL + + +SP + + ++ +TL F + AK++
Sbjct: 281 GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 10 GH--VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60
GH +P+RDS LT +LQ+SL + + +SP + + ++ +TL F + AK
Sbjct: 281 GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 309 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 368
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 118
Query: 369 TRSRS 373
T R+
Sbjct: 119 TVVRN 123
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 309 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 368
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 62 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 121
Query: 369 TRSRS 373
T R+
Sbjct: 122 TVVRN 126
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 9 NGHVPFRDSKLTRILQSSLGGNA----RTAII----CTLSPARS 44
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 232 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 275
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 9 NGHVPFRDSKLTRILQSSLGGNA----RTAII----CTLSPARS 44
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 216 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 259
>pdb|4AM0|A Chain A, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|C Chain C, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|E Chain E, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|H Chain H, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
Length = 217
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 270 VGCVQMGKGTTGYTDLKKSEPSLNKDRDLNMTSVDINPATSGVAETEDEDEQ---CGESR 326
+G + G GT Y D KS+ +L D N + ++ TS ED C
Sbjct: 48 IGNIYPGSGTVNYDDKFKSKATLTIDTSSNTAYMQLSSLTS-------EDSAVYYCTRGG 100
Query: 327 STTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNLTRSRSCKACLMTSYSPD 385
S + + SVT S+ + +P P Y P + T S CL+ Y P+
Sbjct: 101 SHAMDYWGQ-----GTSVTVSSAKTTP--PSVYPLAPGSADTTGSSVTLGCLVKGYFPE 152
>pdb|4AL8|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
pdb|4ALA|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 217
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 270 VGCVQMGKGTTGYTDLKKSEPSLNKDRDLNMTSVDINPATSGVAETEDEDEQ---CGESR 326
+G + G GT Y D KS+ +L D N + ++ TS ED C
Sbjct: 48 IGNIYPGSGTVNYDDKFKSKATLTIDTSSNTAYMQLSSLTS-------EDSAVYYCTRGG 100
Query: 327 STTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNLTRSRSCKACLMTSYSPD 385
S + + SVT S+ + +P P Y P + T S CL+ Y P+
Sbjct: 101 SHAMDYWGQ-----GTSVTVSSAKTTP--PSVYPLAPGCGDTTGSSVTLGCLVKGYFPE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,289,283
Number of Sequences: 62578
Number of extensions: 810040
Number of successful extensions: 1609
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 95
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)