Query 004556
Match_columns 745
No_of_seqs 213 out of 1583
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 01:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11995 DUF3490: Domain of un 100.0 3.1E-90 6.7E-95 659.0 15.1 160 569-728 1-161 (161)
2 KOG0245 Kinesin-like protein [ 99.9 1.1E-26 2.4E-31 268.5 12.7 152 8-160 294-464 (1221)
3 KOG0243 Kinesin-like protein [ 99.9 4.4E-26 9.5E-31 267.0 11.4 98 1-99 330-427 (1041)
4 KOG0241 Kinesin-like protein [ 99.9 3.3E-25 7.1E-30 252.7 10.7 178 1-181 285-467 (1714)
5 KOG4280 Kinesin-like protein [ 99.9 7.7E-25 1.7E-29 246.9 5.1 96 1-97 275-370 (574)
6 KOG0242 Kinesin-like protein [ 99.9 7.1E-24 1.5E-28 245.1 11.0 140 1-146 269-410 (675)
7 KOG0240 Kinesin (SMY1 subfamil 99.8 2.5E-21 5.5E-26 215.2 8.1 145 1-145 270-446 (607)
8 PLN03188 kinesin-12 family pro 99.8 1.6E-20 3.4E-25 222.9 6.0 97 1-97 369-474 (1320)
9 KOG0244 Kinesin-like protein [ 99.8 2.2E-20 4.8E-25 216.7 6.0 96 1-97 255-351 (913)
10 cd01373 KISc_KLP2_like Kinesin 99.7 1.3E-17 2.8E-22 179.3 3.3 62 1-62 273-337 (337)
11 cd01364 KISc_BimC_Eg5 Kinesin 99.7 2E-17 4.4E-22 178.2 3.8 69 1-70 283-351 (352)
12 cd01370 KISc_KIP3_like Kinesin 99.7 2.4E-17 5.3E-22 177.2 3.3 62 1-62 275-338 (338)
13 cd01365 KISc_KIF1A_KIF1B Kines 99.6 5.2E-17 1.1E-21 175.6 3.7 62 8-69 295-356 (356)
14 cd01369 KISc_KHC_KIF5 Kinesin 99.6 2.1E-16 4.5E-21 168.5 3.5 62 1-62 264-325 (325)
15 cd01371 KISc_KIF3 Kinesin moto 99.6 2.4E-16 5.3E-21 169.0 3.6 62 1-62 272-333 (333)
16 cd01368 KISc_KIF23_like Kinesi 99.6 2.1E-16 4.5E-21 170.6 3.0 53 8-60 293-345 (345)
17 cd01372 KISc_KIF4 Kinesin moto 99.6 5E-16 1.1E-20 166.5 3.6 63 1-63 277-341 (341)
18 cd01374 KISc_CENP_E Kinesin mo 99.6 8.3E-16 1.8E-20 163.9 3.4 62 1-62 259-321 (321)
19 COG5059 KIP1 Kinesin-like prot 99.6 1.7E-15 3.7E-20 173.5 5.9 70 1-70 274-344 (568)
20 cd01375 KISc_KIF9_like Kinesin 99.6 9.1E-16 2E-20 164.8 3.1 60 1-60 275-334 (334)
21 PF00225 Kinesin: Kinesin moto 99.6 1.3E-15 2.7E-20 162.4 3.3 62 1-62 273-335 (335)
22 cd01366 KISc_C_terminal Kinesi 99.6 1.4E-15 3.1E-20 162.2 3.5 64 1-65 266-329 (329)
23 smart00129 KISc Kinesin motor, 99.5 1.6E-15 3.6E-20 161.9 3.6 68 2-69 267-335 (335)
24 cd01376 KISc_KID_like Kinesin 99.5 4.1E-15 8.8E-20 158.8 4.1 53 8-60 267-319 (319)
25 cd01367 KISc_KIF2_like Kinesin 99.5 4.2E-15 9.2E-20 158.9 4.2 53 8-60 270-322 (322)
26 cd00106 KISc Kinesin motor dom 99.4 4.3E-14 9.3E-19 150.3 3.3 59 2-60 269-328 (328)
27 KOG0246 Kinesin-like protein [ 99.4 6.7E-14 1.4E-18 156.5 2.8 66 1-67 480-546 (676)
28 KOG0239 Kinesin (KAR3 subfamil 99.4 7.2E-14 1.6E-18 162.3 1.6 68 1-69 580-647 (670)
29 KOG0247 Kinesin-like protein [ 99.2 1.3E-10 2.8E-15 133.6 11.0 62 8-69 382-443 (809)
30 PRK10884 SH3 domain-containing 91.4 0.74 1.6E-05 47.8 8.1 77 71-147 88-166 (206)
31 PRK04406 hypothetical protein; 79.9 18 0.00038 32.1 9.3 54 78-147 6-59 (75)
32 PRK02119 hypothetical protein; 76.9 23 0.0005 31.2 9.1 54 78-147 4-57 (73)
33 PRK04325 hypothetical protein; 73.9 27 0.00059 30.8 8.8 51 81-147 7-57 (74)
34 PF04420 CHD5: CHD5-like prote 72.8 22 0.00047 35.5 8.9 67 76-146 40-106 (161)
35 COG3883 Uncharacterized protei 72.5 12 0.00026 40.5 7.5 69 75-145 37-105 (265)
36 PRK11637 AmiB activator; Provi 70.8 21 0.00045 40.5 9.3 34 110-143 93-126 (428)
37 PF14282 FlxA: FlxA-like prote 67.8 32 0.0007 32.1 8.4 61 75-140 18-78 (106)
38 PF04102 SlyX: SlyX; InterPro 66.8 19 0.00041 31.2 6.2 38 110-147 15-52 (69)
39 PF06005 DUF904: Protein of un 66.6 47 0.001 29.4 8.6 52 77-144 19-70 (72)
40 PRK02793 phi X174 lysis protei 65.0 34 0.00074 30.1 7.4 37 111-147 20-56 (72)
41 PRK00846 hypothetical protein; 64.4 53 0.0011 29.6 8.6 52 80-147 10-61 (77)
42 COG2433 Uncharacterized conser 64.0 16 0.00035 43.6 6.7 32 109-140 477-508 (652)
43 PRK00736 hypothetical protein; 63.6 35 0.00077 29.6 7.2 38 110-147 16-53 (68)
44 PF09726 Macoilin: Transmembra 62.8 26 0.00057 42.7 8.5 71 77-147 419-501 (697)
45 PRK11637 AmiB activator; Provi 62.3 21 0.00047 40.4 7.3 34 112-145 88-121 (428)
46 PF01486 K-box: K-box region; 61.1 85 0.0018 28.6 9.7 70 75-144 18-99 (100)
47 PF03999 MAP65_ASE1: Microtubu 59.3 6.3 0.00014 47.0 2.6 47 570-616 288-336 (619)
48 COG2900 SlyX Uncharacterized p 59.1 84 0.0018 28.1 8.7 42 110-151 19-60 (72)
49 PF07106 TBPIP: Tat binding pr 58.7 58 0.0013 32.3 8.9 20 78-97 88-107 (169)
50 COG3074 Uncharacterized protei 58.7 75 0.0016 28.4 8.3 59 77-144 19-77 (79)
51 PRK00295 hypothetical protein; 58.2 46 0.001 28.9 7.0 35 112-146 18-52 (68)
52 PRK00295 hypothetical protein; 54.8 89 0.0019 27.2 8.2 50 83-141 5-54 (68)
53 PRK10884 SH3 domain-containing 53.3 34 0.00074 35.7 6.4 68 76-143 100-169 (206)
54 PF12325 TMF_TATA_bd: TATA ele 53.2 43 0.00093 32.3 6.6 31 115-145 63-93 (120)
55 PF12329 TMF_DNA_bd: TATA elem 52.4 81 0.0017 27.8 7.7 61 76-145 12-72 (74)
56 PF08317 Spc7: Spc7 kinetochor 50.4 68 0.0015 35.4 8.5 15 79-93 187-201 (325)
57 PF14257 DUF4349: Domain of un 49.4 1.3E+02 0.0029 31.8 10.3 96 32-146 95-195 (262)
58 PF10205 KLRAQ: Predicted coil 49.1 71 0.0015 30.3 7.1 66 79-146 8-73 (102)
59 KOG2129 Uncharacterized conser 49.0 59 0.0013 37.5 7.7 68 75-147 252-319 (552)
60 PF08614 ATG16: Autophagy prot 48.7 1.3E+02 0.0029 30.6 9.8 57 76-141 116-172 (194)
61 TIGR03185 DNA_S_dndD DNA sulfu 47.9 58 0.0013 39.1 8.1 67 78-144 400-466 (650)
62 PF12718 Tropomyosin_1: Tropom 47.7 49 0.0011 32.6 6.2 64 80-145 77-140 (143)
63 PRK15422 septal ring assembly 47.3 1.3E+02 0.0029 27.3 8.2 59 77-144 19-77 (79)
64 KOG3990 Uncharacterized conser 47.0 42 0.00092 36.3 6.0 21 76-96 225-245 (305)
65 COG2433 Uncharacterized conser 46.1 49 0.0011 39.8 6.8 37 111-147 472-508 (652)
66 KOG2391 Vacuolar sorting prote 45.5 93 0.002 35.1 8.5 63 77-141 219-281 (365)
67 PRK00736 hypothetical protein; 43.9 1.6E+02 0.0034 25.7 8.0 36 106-141 19-54 (68)
68 PF09789 DUF2353: Uncharacteri 43.7 1E+02 0.0022 34.5 8.5 73 75-147 29-113 (319)
69 PF08826 DMPK_coil: DMPK coile 43.6 97 0.0021 26.7 6.6 31 104-134 30-60 (61)
70 TIGR03752 conj_TIGR03752 integ 43.3 73 0.0016 37.3 7.6 31 114-144 110-140 (472)
71 PF15290 Syntaphilin: Golgi-lo 43.0 1.2E+02 0.0026 33.5 8.6 116 9-145 8-135 (305)
72 KOG4196 bZIP transcription fac 42.7 88 0.0019 30.9 6.9 61 82-142 46-117 (135)
73 KOG1962 B-cell receptor-associ 42.6 94 0.002 33.0 7.7 11 53-63 57-67 (216)
74 PF04859 DUF641: Plant protein 41.9 1.6E+02 0.0035 29.0 8.7 72 75-147 48-121 (131)
75 PRK10803 tol-pal system protei 41.9 72 0.0016 34.3 6.9 61 82-144 39-99 (263)
76 PF04102 SlyX: SlyX; InterPro 41.4 1.1E+02 0.0023 26.6 6.6 53 81-142 2-54 (69)
77 PF14662 CCDC155: Coiled-coil 41.1 65 0.0014 33.6 6.1 18 78-95 38-55 (193)
78 KOG0804 Cytoplasmic Zn-finger 40.5 90 0.0019 36.4 7.6 65 77-146 383-447 (493)
79 PRK09039 hypothetical protein; 39.6 1.4E+02 0.0029 33.5 8.8 20 76-95 137-156 (343)
80 TIGR02338 gimC_beta prefoldin, 39.6 2.2E+02 0.0049 26.5 9.0 41 105-145 66-106 (110)
81 PF07106 TBPIP: Tat binding pr 39.5 30 0.00066 34.3 3.4 26 116-141 112-137 (169)
82 TIGR02894 DNA_bind_RsfA transc 38.9 1.8E+02 0.0039 29.7 8.6 18 79-96 57-74 (161)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.7 1.3E+02 0.0028 29.0 7.4 28 110-137 102-129 (132)
84 PF10146 zf-C4H2: Zinc finger- 38.6 1.4E+02 0.0031 31.7 8.4 72 76-147 32-109 (230)
85 TIGR02894 DNA_bind_RsfA transc 38.5 1.6E+02 0.0034 30.1 8.2 39 107-145 112-150 (161)
86 PF07888 CALCOCO1: Calcium bin 37.4 91 0.002 37.2 7.3 17 78-94 166-182 (546)
87 PF13851 GAS: Growth-arrest sp 37.0 1.3E+02 0.0028 31.2 7.6 15 77-91 28-42 (201)
88 PRK11020 hypothetical protein; 37.0 2.2E+02 0.0048 27.6 8.4 53 75-131 4-56 (118)
89 PF05529 Bap31: B-cell recepto 36.9 1.2E+02 0.0026 30.7 7.3 30 112-141 160-189 (192)
90 COG1579 Zn-ribbon protein, pos 36.8 1.2E+02 0.0027 32.5 7.6 15 369-383 195-209 (239)
91 TIGR03185 DNA_S_dndD DNA sulfu 36.5 94 0.002 37.4 7.5 70 76-145 391-460 (650)
92 PF12325 TMF_TATA_bd: TATA ele 36.3 3E+02 0.0064 26.7 9.4 19 76-94 16-34 (120)
93 COG4942 Membrane-bound metallo 36.1 73 0.0016 36.9 6.1 23 107-129 88-110 (420)
94 PF14584 DUF4446: Protein of u 36.0 1.6E+02 0.0034 29.6 7.7 65 81-145 21-85 (151)
95 PF07989 Microtub_assoc: Micro 35.6 1.9E+02 0.004 25.8 7.3 24 118-141 48-71 (75)
96 PF06156 DUF972: Protein of un 35.3 2.1E+02 0.0046 27.1 8.1 35 107-141 23-57 (107)
97 TIGR02231 conserved hypothetic 34.3 1.3E+02 0.0029 35.0 8.1 42 105-146 130-171 (525)
98 PF04111 APG6: Autophagy prote 34.0 89 0.0019 34.5 6.2 10 267-276 138-147 (314)
99 PF12329 TMF_DNA_bd: TATA elem 33.6 1.1E+02 0.0023 27.1 5.5 59 77-144 6-64 (74)
100 KOG4603 TBP-1 interacting prot 33.5 89 0.0019 32.3 5.6 64 76-141 79-144 (201)
101 PF08700 Vps51: Vps51/Vps67; 33.4 2.6E+02 0.0056 24.3 8.0 60 76-140 26-85 (87)
102 smart00338 BRLZ basic region l 33.3 1.6E+02 0.0035 24.7 6.4 35 108-142 28-62 (65)
103 PF15188 CCDC-167: Coiled-coil 33.3 85 0.0018 28.8 4.9 27 115-141 38-64 (85)
104 KOG0993 Rab5 GTPase effector R 33.3 1.7E+02 0.0037 33.9 8.2 29 117-145 159-187 (542)
105 PF12709 Kinetocho_Slk19: Cent 33.1 1.4E+02 0.003 27.6 6.3 40 104-143 47-86 (87)
106 PRK02793 phi X174 lysis protei 33.0 3.1E+02 0.0066 24.2 8.2 52 81-141 6-57 (72)
107 PF05529 Bap31: B-cell recepto 33.0 94 0.002 31.4 5.8 36 111-146 152-187 (192)
108 PF07795 DUF1635: Protein of u 32.9 1.7E+02 0.0036 31.2 7.6 57 79-140 4-60 (214)
109 PRK13729 conjugal transfer pil 32.2 76 0.0016 37.2 5.5 18 77-94 70-87 (475)
110 PF01920 Prefoldin_2: Prefoldi 32.1 3.2E+02 0.0068 24.4 8.5 43 104-146 60-102 (106)
111 PF14662 CCDC155: Coiled-coil 31.6 97 0.0021 32.4 5.6 65 79-145 63-127 (193)
112 PF10186 Atg14: UV radiation r 31.5 1.9E+02 0.0041 30.4 8.0 38 108-145 65-102 (302)
113 PF00038 Filament: Intermediat 31.3 2E+02 0.0044 30.8 8.4 67 77-143 19-91 (312)
114 PF10805 DUF2730: Protein of u 31.2 4.1E+02 0.009 24.8 9.3 58 77-141 43-100 (106)
115 PF08317 Spc7: Spc7 kinetochor 31.2 1.7E+02 0.0037 32.3 7.9 16 80-95 181-196 (325)
116 PF04111 APG6: Autophagy prote 31.1 1.9E+02 0.0041 32.0 8.2 18 77-94 51-68 (314)
117 PF00170 bZIP_1: bZIP transcri 30.9 1.9E+02 0.0041 24.2 6.4 35 108-142 28-62 (64)
118 KOG0250 DNA repair protein RAD 30.7 1.8E+02 0.0038 37.4 8.5 61 77-145 373-433 (1074)
119 KOG4348 Adaptor protein CMS/SE 30.7 1.4E+02 0.003 35.0 7.0 68 65-144 558-625 (627)
120 PF10392 COG5: Golgi transport 30.4 3E+02 0.0065 26.5 8.5 48 47-95 5-52 (132)
121 PRK05431 seryl-tRNA synthetase 29.7 90 0.002 35.8 5.6 71 76-146 35-106 (425)
122 PF10458 Val_tRNA-synt_C: Valy 29.7 1.5E+02 0.0033 25.2 5.7 21 76-96 4-24 (66)
123 KOG2991 Splicing regulator [RN 29.3 1.4E+02 0.003 32.7 6.4 60 84-143 237-301 (330)
124 KOG2751 Beclin-like protein [S 29.2 6.5E+02 0.014 29.5 12.0 18 76-93 143-160 (447)
125 smart00787 Spc7 Spc7 kinetocho 29.1 2.5E+02 0.0054 31.2 8.7 23 119-141 238-260 (312)
126 PF06005 DUF904: Protein of un 28.6 3.5E+02 0.0075 24.0 7.8 30 111-140 23-52 (72)
127 COG1579 Zn-ribbon protein, pos 28.4 1.9E+02 0.0042 31.1 7.4 29 115-143 112-140 (239)
128 PF09738 DUF2051: Double stran 28.2 4.8E+02 0.01 29.1 10.5 62 77-147 113-174 (302)
129 PF14389 Lzipper-MIP1: Leucine 28.0 3.3E+02 0.0071 24.8 7.8 33 104-136 52-84 (88)
130 PF11932 DUF3450: Protein of u 27.6 2.5E+02 0.0054 29.7 8.1 28 109-136 73-100 (251)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.6 3.5E+02 0.0076 26.0 8.4 33 112-144 97-129 (132)
132 PF03961 DUF342: Protein of un 27.5 5.3E+02 0.011 29.7 11.3 34 113-146 375-408 (451)
133 COG3883 Uncharacterized protei 27.3 1.5E+02 0.0033 32.3 6.5 41 105-145 72-112 (265)
134 KOG2959 Transcriptional regula 27.2 49 0.0011 34.6 2.6 54 669-722 115-187 (238)
135 KOG0963 Transcription factor/C 27.1 2.7E+02 0.0058 33.9 8.8 72 74-145 247-342 (629)
136 TIGR03752 conj_TIGR03752 integ 26.8 1.2E+02 0.0027 35.5 6.0 61 78-139 82-142 (472)
137 COG1382 GimC Prefoldin, chaper 26.7 6.1E+02 0.013 24.8 10.0 42 106-147 70-111 (119)
138 PF11932 DUF3450: Protein of u 26.6 2.1E+02 0.0045 30.3 7.3 27 107-133 78-104 (251)
139 PRK15121 right oriC-binding tr 26.5 40 0.00088 35.9 2.0 58 662-724 36-99 (289)
140 TIGR01554 major_cap_HK97 phage 26.1 2E+02 0.0043 32.1 7.4 62 79-142 2-63 (378)
141 KOG3647 Predicted coiled-coil 26.0 2.1E+02 0.0045 31.6 7.0 53 75-129 111-163 (338)
142 PF15619 Lebercilin: Ciliary p 25.8 2.5E+02 0.0055 29.1 7.5 21 76-96 61-81 (194)
143 KOG0999 Microtubule-associated 25.6 1.4E+02 0.0029 35.9 6.0 70 74-147 6-77 (772)
144 PRK09343 prefoldin subunit bet 25.5 5.2E+02 0.011 24.7 9.1 38 107-144 72-109 (121)
145 PRK11546 zraP zinc resistance 25.4 95 0.0021 31.0 4.2 65 77-146 55-122 (143)
146 PF13851 GAS: Growth-arrest sp 25.2 2.4E+02 0.0052 29.3 7.2 19 78-96 64-82 (201)
147 KOG2264 Exostosin EXT1L [Signa 25.1 2E+02 0.0043 34.8 7.2 47 551-602 563-609 (907)
148 PLN02320 seryl-tRNA synthetase 24.9 1.2E+02 0.0027 35.8 5.6 70 77-146 101-170 (502)
149 PRK13503 transcriptional activ 24.7 96 0.0021 32.1 4.4 87 614-724 176-265 (278)
150 TIGR00606 rad50 rad50. This fa 24.6 2.5E+02 0.0054 36.8 8.8 64 80-143 803-866 (1311)
151 PF08657 DASH_Spc34: DASH comp 24.4 1.6E+02 0.0035 31.9 6.1 21 77-97 195-215 (259)
152 PF11180 DUF2968: Protein of u 23.8 3.3E+02 0.0071 28.6 7.8 37 110-146 151-187 (192)
153 PF09755 DUF2046: Uncharacteri 23.7 2.6E+02 0.0056 31.3 7.5 69 76-149 229-297 (310)
154 PRK10636 putative ABC transpor 23.7 3.1E+02 0.0067 33.1 8.8 34 107-140 599-632 (638)
155 PRK00888 ftsB cell division pr 23.6 2.4E+02 0.0053 26.4 6.3 21 111-131 46-66 (105)
156 PF10146 zf-C4H2: Zinc finger- 23.5 2.8E+02 0.006 29.6 7.5 38 106-143 53-90 (230)
157 PF05377 FlaC_arch: Flagella a 23.5 2E+02 0.0044 24.5 5.1 29 114-142 15-43 (55)
158 smart00338 BRLZ basic region l 23.4 2.1E+02 0.0046 24.0 5.4 34 111-144 24-57 (65)
159 PF12761 End3: Actin cytoskele 23.4 1.5E+02 0.0032 31.1 5.3 66 78-143 98-183 (195)
160 PF02403 Seryl_tRNA_N: Seryl-t 23.4 2.1E+02 0.0046 26.1 5.8 34 110-143 71-104 (108)
161 PF00170 bZIP_1: bZIP transcri 23.2 2.3E+02 0.005 23.8 5.6 33 111-143 24-56 (64)
162 KOG0996 Structural maintenance 23.1 3.2E+02 0.007 35.6 8.9 60 77-143 835-894 (1293)
163 COG3879 Uncharacterized protei 22.8 9.2E+02 0.02 26.3 11.1 39 110-148 68-110 (247)
164 KOG0971 Microtubule-associated 22.7 2.7E+02 0.0059 35.4 8.0 39 674-712 977-1026(1243)
165 PF13747 DUF4164: Domain of un 22.7 5.2E+02 0.011 23.6 8.1 60 76-141 8-67 (89)
166 PF15035 Rootletin: Ciliary ro 22.6 5E+02 0.011 26.8 8.8 18 76-93 23-40 (182)
167 PF10234 Cluap1: Clusterin-ass 22.3 2E+02 0.0044 31.5 6.3 10 18-27 86-95 (267)
168 PRK13169 DNA replication intia 22.3 4.2E+02 0.0091 25.4 7.6 32 108-139 24-55 (110)
169 PF15290 Syntaphilin: Golgi-lo 22.3 2E+02 0.0044 31.8 6.2 55 77-133 90-144 (305)
170 PF15372 DUF4600: Domain of un 21.9 5.5E+02 0.012 25.4 8.5 70 76-145 15-90 (129)
171 PRK00888 ftsB cell division pr 21.8 2.1E+02 0.0046 26.8 5.6 30 110-139 31-60 (105)
172 PF15369 KIAA1328: Uncharacter 21.7 4.6E+02 0.0099 29.6 8.8 19 73-91 5-23 (328)
173 COG4026 Uncharacterized protei 21.7 4.1E+02 0.009 28.7 8.1 6 33-38 60-65 (290)
174 TIGR03007 pepcterm_ChnLen poly 21.7 5.6E+02 0.012 29.5 10.1 70 77-147 169-238 (498)
175 PF00038 Filament: Intermediat 21.6 4.1E+02 0.0089 28.5 8.5 30 111-140 260-289 (312)
176 PLN02678 seryl-tRNA synthetase 21.5 1.1E+02 0.0023 35.7 4.3 71 76-146 40-111 (448)
177 PF03938 OmpH: Outer membrane 21.1 6.2E+02 0.013 24.3 8.9 23 77-99 51-73 (158)
178 PF04977 DivIC: Septum formati 21.0 3.4E+02 0.0073 23.0 6.3 18 115-132 33-50 (80)
179 PF09726 Macoilin: Transmembra 20.9 4.3E+02 0.0094 32.6 9.3 33 112-144 487-519 (697)
180 PF04201 TPD52: Tumour protein 20.9 2.7E+02 0.0059 28.5 6.4 39 108-146 31-69 (162)
181 KOG4603 TBP-1 interacting prot 20.8 2E+02 0.0043 29.9 5.4 48 77-124 94-141 (201)
182 COG5185 HEC1 Protein involved 20.8 2.1E+02 0.0045 33.9 6.2 28 118-145 373-400 (622)
183 PF15186 TEX13: Testis-express 20.8 97 0.0021 31.2 3.2 44 611-659 83-126 (152)
184 PF07716 bZIP_2: Basic region 20.8 2.8E+02 0.0062 22.6 5.5 30 112-141 24-53 (54)
185 PF06156 DUF972: Protein of un 20.7 2.8E+02 0.006 26.3 6.1 42 106-147 15-56 (107)
186 PRK06975 bifunctional uroporph 20.6 3.2E+02 0.007 33.3 8.2 41 105-145 370-410 (656)
187 PF07544 Med9: RNA polymerase 20.1 3.5E+02 0.0077 24.2 6.4 22 76-97 28-49 (83)
188 PF12888 Lipid_bd: Lipid-bindi 20.1 42 0.00091 32.2 0.6 16 599-614 76-91 (112)
No 1
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=3.1e-90 Score=658.95 Aligned_cols=160 Identities=69% Similarity=1.121 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHhhhccccceehhheeeeecCCCCCceEEEEeehhhhhhHHhhhcCCCCCCCCccccHHHHHHHHHHHH
Q 004556 569 EFKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSIYMEVEQRRLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRER 648 (745)
Q Consensus 569 ~F~~~q~eIieLW~~C~VslvHRTyFfLLFkGd~~D~iYmEVE~RRLs~lk~~~~~g~~~~~~~~~~s~~SS~kaL~rER 648 (745)
+||+||++||||||+|||||||||||||||||||+|+||||||+|||+|||++|++|+++++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHhhCcCCCCcchhHHHHhhcCCcc-chhHHHHHHHHHHHHhhccCCChhhhhhhcccccC
Q 004556 649 HMLSQHVKKRFSREQRENLFLKWGIGLQTKHRSLQLAHLLWTSK-DLNHVAESAAIVSKLVTFVKPDQAFREMFGLNFAP 727 (745)
Q Consensus 649 emL~k~m~krls~eERe~ly~KWgI~l~sK~RrLQla~rLWt~t-dm~HVrESA~lVAKLvgf~e~g~a~kEMFgLnF~~ 727 (745)
+||||||++||+.+|||+||.||||+|+||||||||||+|||+| ||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999998
Q ss_pred C
Q 004556 728 R 728 (745)
Q Consensus 728 ~ 728 (745)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.94 E-value=1.1e-26 Score=268.54 Aligned_cols=152 Identities=34% Similarity=0.503 Sum_probs=131.3
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHHHHHHHHHH
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSR 87 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk~LqkEIa~ 87 (745)
|..+||||||.|||||+++|||||||+|||++||++-||+||++||+||+|||.|+|+|+||++++++ +|++|++||.+
T Consensus 294 ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~r 372 (1221)
T KOG0245|consen 294 KSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVAR 372 (1221)
T ss_pred CCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHH
Confidence 55699999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HHHHHhcCCCCCC--------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----C
Q 004556 88 LENELRGSGPVFI--------------TPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS-----A 148 (745)
Q Consensus 88 LesEL~s~~~~~s--------------~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~-----~ 148 (745)
|++.|+....... ..++...|.|.++++.+|++.+++.-++-+..+.+.+.+.+.+|..- +
T Consensus 373 Lksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~k 452 (1221)
T KOG0245|consen 373 LKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGK 452 (1221)
T ss_pred HHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCc
Confidence 9999987654321 22346778899999999999999888888888888888888888765 3
Q ss_pred CCCCccccCCCC
Q 004556 149 ESPPVVYVDDRP 160 (745)
Q Consensus 149 s~~~~~~~~~~~ 160 (745)
..|++|+.+.+|
T Consensus 453 k~phLVNLneDP 464 (1221)
T KOG0245|consen 453 KTPHLVNLNEDP 464 (1221)
T ss_pred cCcceeccCCCc
Confidence 456666665554
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.93 E-value=4.4e-26 Score=266.96 Aligned_cols=98 Identities=39% Similarity=0.639 Sum_probs=93.6
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHHH
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKH 80 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk~ 80 (745)
|+||.+ +.+|||||||||||||||||||..||+|||||||+..+++||++||.||.|||+|+|+|.+|..+..+++++.
T Consensus 330 InALVe-~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd 408 (1041)
T KOG0243|consen 330 INALVE-HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKD 408 (1041)
T ss_pred HHHHHc-cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHH
Confidence 678988 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 004556 81 LQRELSRLENELRGSGPVF 99 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~~~ 99 (745)
|-.||.+|+.+|...+.+.
T Consensus 409 ~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhC
Confidence 9999999999999887653
No 4
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.92 E-value=3.3e-25 Score=252.74 Aligned_cols=178 Identities=27% Similarity=0.377 Sum_probs=147.9
Q ss_pred CccccC-----CCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHH
Q 004556 1 MVECSK-----GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDK 75 (745)
Q Consensus 1 I~ALSk-----gK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~k 75 (745)
|+||++ |+..+||||||.|||||||+|||||+|+||+||||++.+|+||++||+||.|||.|+|.+.||+.+.+.
T Consensus 285 IsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 285 ISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred HHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 455644 567799999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSAESPPVVY 155 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~~s~~~~~~ 155 (745)
.|++|++|+..|+.+|.+.... ...++...+.|.++.|+++...+++--.+.+...++.+..++.++.+-.. +...+
T Consensus 365 -virElReEve~lr~qL~~ae~~-~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~-sgikv 441 (1714)
T KOG0241|consen 365 -VIRELREEVEKLREQLEQAEAM-KLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLEN-SGIKV 441 (1714)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhc-cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccc
Confidence 8999999999999999884332 25567788888888888887777776666666666666666667666433 34778
Q ss_pred cCCCCcccccCCCCCCCccccccccC
Q 004556 156 VDDRPPVVYAGLDHQYPRLRVRSSWD 181 (745)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (745)
.++....|+.++||....+.|-...+
T Consensus 442 ~dDK~ylvnlnadP~lnellvyyl~~ 467 (1714)
T KOG0241|consen 442 GDDKCYLVNLNADPALNELLVYYLKD 467 (1714)
T ss_pred cccceEEEeccCCccHHHHHHHhhcC
Confidence 88999999999999887777766554
No 5
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.90 E-value=7.7e-25 Score=246.87 Aligned_cols=96 Identities=41% Similarity=0.655 Sum_probs=91.3
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHHH
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKH 80 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk~ 80 (745)
|.||++|+.+||||||||||+||||||||||||+|||||+|+..+++||++||+||+|||.|+|+|.+|+++. .+++++
T Consensus 275 I~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~ 353 (574)
T KOG4280|consen 275 ISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRE 353 (574)
T ss_pred HHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHH
Confidence 6899999888999999999999999999999999999999999999999999999999999999999999987 468999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 004556 81 LQRELSRLENELRGSGP 97 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~ 97 (745)
|+++|++|+.+|...+.
T Consensus 354 lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 354 LQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHhhccccC
Confidence 99999999999988654
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.90 E-value=7.1e-24 Score=245.10 Aligned_cols=140 Identities=55% Similarity=0.731 Sum_probs=120.5
Q ss_pred CccccCC-CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHH
Q 004556 1 MVECSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVK 79 (745)
Q Consensus 1 I~ALSkg-K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk 79 (745)
|++|++| +..||||||||||||||+||||||+|+|||||+|+..||+||.+||+||+|||+|++++.+|+++.++++++
T Consensus 269 I~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~ 348 (675)
T KOG0242|consen 269 INKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLK 348 (675)
T ss_pred HHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhH
Confidence 6789999 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 80 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLE-KEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLe-kEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
.+++++..|+.++.......... .+....+..++ +++.++..+.+.++...+.+.......
T Consensus 349 ~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (675)
T KOG0242|consen 349 YLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELLPQRSEIQSLVELLKRLSASR 410 (675)
T ss_pred HHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhhhhhhHHHHHHHHHhhhcccc
Confidence 99999999999998866543221 24556666777 777777777777777777666655543
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=99.84 E-value=2.5e-21 Score=215.21 Aligned_cols=145 Identities=29% Similarity=0.428 Sum_probs=110.5
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHHH
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKH 80 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk~ 80 (745)
|+||+.|+..||||||||||||||+||||||||.+|+||+|+..+..||.+||+|+.|||.|+|.+.+|....+.+..+.
T Consensus 270 I~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~ 349 (607)
T KOG0240|consen 270 INALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRK 349 (607)
T ss_pred HHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998877665554
Q ss_pred HHH----------HHHHHHHHHhcCCCCCCCcc---h-----H-------------HHHHH-HHHHHHHHHHHHHHHHHH
Q 004556 81 LQR----------ELSRLENELRGSGPVFITPD---S-----V-------------SVLRE-KDLRIEKLEKEVDELTMQ 128 (745)
Q Consensus 81 Lqk----------EIa~LesEL~s~~~~~s~~e---l-----~-------------~~L~E-ke~eIekLekEi~eLq~q 128 (745)
|.. ++.+++..|..........+ . . ..+.. .+...+.+++++..|++|
T Consensus 350 ~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qq 429 (607)
T KOG0240|consen 350 LEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQ 429 (607)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 433 34444444443322211100 0 0 00111 245667789999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004556 129 RDLARTEVENLLRGAGK 145 (745)
Q Consensus 129 ld~aq~eie~L~q~v~~ 145 (745)
++....+++...+...+
T Consensus 430 lD~kd~~~n~~sqL~~~ 446 (607)
T KOG0240|consen 430 LDQKDDQINKQSQLMEK 446 (607)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888766555444
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.81 E-value=1.6e-20 Score=222.92 Aligned_cols=97 Identities=38% Similarity=0.633 Sum_probs=84.6
Q ss_pred CccccC----CCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHH-
Q 004556 1 MVECSK----GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDK- 75 (745)
Q Consensus 1 I~ALSk----gK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~k- 75 (745)
|.+|+. |+..||||||||||+|||++|||||+|+|||||||+..+++||++||+||.|||.|+|+|.+|.++.+.
T Consensus 369 I~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~v 448 (1320)
T PLN03188 369 INILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDV 448 (1320)
T ss_pred HHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhH
Confidence 345653 567899999999999999999999999999999999999999999999999999999999999876543
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCCC
Q 004556 76 ----ALVKHLQRELSRLENELRGSGP 97 (745)
Q Consensus 76 ----alIk~LqkEIa~LesEL~s~~~ 97 (745)
.+|++|+.||.+|+..+..+..
T Consensus 449 n~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 449 NFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4788888888888888655543
No 9
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.80 E-value=2.2e-20 Score=216.73 Aligned_cols=96 Identities=38% Similarity=0.540 Sum_probs=87.4
Q ss_pred CccccCC-CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccccCHHHHHH
Q 004556 1 MVECSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVK 79 (745)
Q Consensus 1 I~ALSkg-K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk 79 (745)
|+||.+. +.+||||||||||||||++||||+.|+||+||||+++++.||++||+||.||+.|+|+|.+|.++ ....+.
T Consensus 255 IsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~-~~~~~~ 333 (913)
T KOG0244|consen 255 ISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDP-KSFEML 333 (913)
T ss_pred HHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccH-HHHHHH
Confidence 5678665 56799999999999999999999999999999999999999999999999999999999999843 346889
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 004556 80 HLQRELSRLENELRGSGP 97 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~~~ 97 (745)
.|+.+|+.|+.+|....+
T Consensus 334 ~lK~ql~~l~~ell~~~~ 351 (913)
T KOG0244|consen 334 KLKAQLEPLQVELLSKAG 351 (913)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999988763
No 10
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.68 E-value=1.3e-17 Score=179.25 Aligned_cols=62 Identities=45% Similarity=0.703 Sum_probs=57.0
Q ss_pred CccccC---CCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSK---GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSk---gK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|.+|+. ++..||||||||||+|||++|||||+|+|||||||+..+++||++||+||.|||.|
T Consensus 273 i~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 273 IMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 345653 46789999999999999999999999999999999999999999999999999986
No 11
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.67 E-value=2e-17 Score=178.24 Aligned_cols=69 Identities=42% Similarity=0.673 Sum_probs=64.9
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccccccccccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 70 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~ 70 (745)
|.+|+.+ ..||||||||||+|||++|||||+|+||+||+|+..+++||++||+||.+|+.|+|.|.+|.
T Consensus 283 i~al~~~-~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 283 INALVEK-SPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHcC-CCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 4567664 68999999999999999999999999999999999999999999999999999999999985
No 12
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.66 E-value=2.4e-17 Score=177.24 Aligned_cols=62 Identities=48% Similarity=0.835 Sum_probs=57.7
Q ss_pred CccccCCC--CCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSKGR--NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSkgK--~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|++|+.+. ..||||||||||+|||++|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 275 i~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 275 INALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 45777764 389999999999999999999999999999999999999999999999999986
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.65 E-value=5.2e-17 Score=175.56 Aligned_cols=62 Identities=44% Similarity=0.688 Sum_probs=60.2
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccc
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN 69 (745)
+..||||||||||+|||++|||||+|+||+||+|+..+++||++||+||.+|+.|++.|++|
T Consensus 295 ~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 295 KSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred CCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 47899999999999999999999999999999999999999999999999999999999886
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.61 E-value=2.1e-16 Score=168.54 Aligned_cols=62 Identities=45% Similarity=0.722 Sum_probs=58.6
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|.+|+.++..||||||||||+||+++|||||+|+||+||+|+..+++||++||+||+|||.|
T Consensus 264 i~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 264 INALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 46788876699999999999999999999999999999999999999999999999999976
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.61 E-value=2.4e-16 Score=168.98 Aligned_cols=62 Identities=40% Similarity=0.722 Sum_probs=58.8
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|++|+.|+..||||||||||+||+++|||||+|+||+||+|...+++||++||+||+|||.|
T Consensus 272 i~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 272 ISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 46788887779999999999999999999999999999999999999999999999999986
No 16
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.61 E-value=2.1e-16 Score=170.65 Aligned_cols=53 Identities=30% Similarity=0.597 Sum_probs=51.5
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhc
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK 60 (745)
+..||||||||||+|||++|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 293 ~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 293 TNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999985
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.59 E-value=5e-16 Score=166.53 Aligned_cols=63 Identities=46% Similarity=0.724 Sum_probs=57.9
Q ss_pred CccccCCC--CCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccc
Q 004556 1 MVECSKGR--NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVT 63 (745)
Q Consensus 1 I~ALSkgK--~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ik 63 (745)
|++|+.+. ..||||||||||+||+++||||++|+||+||+|...+++||++||+||++||.|+
T Consensus 277 i~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 277 ISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 35676653 4899999999999999999999999999999999999999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.57 E-value=8.3e-16 Score=163.88 Aligned_cols=62 Identities=69% Similarity=1.021 Sum_probs=57.7
Q ss_pred CccccCCC-CCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSkgK-~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|.+|+.+. ..||||||||||+|||++|||||+|+|||||+|...+++||++||+||++||.|
T Consensus 259 i~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 259 ISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 45677764 689999999999999999999999999999999999999999999999999976
No 19
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.57 E-value=1.7e-15 Score=173.46 Aligned_cols=70 Identities=49% Similarity=0.788 Sum_probs=65.5
Q ss_pred CccccC-CCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccccccccccc
Q 004556 1 MVECSK-GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 70 (745)
Q Consensus 1 I~ALSk-gK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~ 70 (745)
|.+|.+ ++..||||||||||||||++|||||+|+|||||+|...++++|.+||+||.+|+.|++.+.+|.
T Consensus 274 I~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 274 INALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 456654 4688999999999999999999999999999999999999999999999999999999999995
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.56 E-value=9.1e-16 Score=164.77 Aligned_cols=60 Identities=37% Similarity=0.587 Sum_probs=56.0
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK 60 (745)
|.+|+.+...||||||||||+||+++|||||+|+||+||||+..+++||++||+||+|++
T Consensus 275 i~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 275 INALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 457777656999999999999999999999999999999999999999999999999985
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.56 E-value=1.3e-15 Score=162.36 Aligned_cols=62 Identities=47% Similarity=0.790 Sum_probs=56.7
Q ss_pred CccccCC-CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhccc
Q 004556 1 MVECSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 62 (745)
Q Consensus 1 I~ALSkg-K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~I 62 (745)
|.+|+.+ +..||||||||||+|||++|||||+|+||+||+|...+++||++||+||.+||+|
T Consensus 273 i~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 273 IRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred HhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 3466665 6889999999999999999999999999999999999999999999999999986
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.55 E-value=1.4e-15 Score=162.24 Aligned_cols=64 Identities=38% Similarity=0.611 Sum_probs=59.4
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTN 65 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~ 65 (745)
|.+|+.+ ..||||||||||+||+++||||++|+||+||||...+++||++||+||++|+.|++.
T Consensus 266 l~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 266 ISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 3566664 899999999999999999999999999999999999999999999999999999873
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.55 E-value=1.6e-15 Score=161.85 Aligned_cols=68 Identities=50% Similarity=0.774 Sum_probs=63.7
Q ss_pred ccccCC-CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccc
Q 004556 2 VECSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69 (745)
Q Consensus 2 ~ALSkg-K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN 69 (745)
.+|+.+ +..|||||+||||+||+++|||+++|+||+||+|...+++||++||+||.++++|++.|.+|
T Consensus 267 ~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 267 NALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 456665 67899999999999999999999999999999999999999999999999999999999875
No 24
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.53 E-value=4.1e-15 Score=158.76 Aligned_cols=53 Identities=43% Similarity=0.710 Sum_probs=51.2
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhc
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK 60 (745)
+..||||||||||+|||++|||||+|+||+||||...+++||++||+||+|||
T Consensus 267 ~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 267 GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 45799999999999999999999999999999999999999999999999997
No 25
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.53 E-value=4.2e-15 Score=158.91 Aligned_cols=53 Identities=47% Similarity=0.725 Sum_probs=51.1
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhc
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK 60 (745)
+..||||||||||+|||++|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 270 ~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 270 NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 45799999999999999999999999999999999999999999999999986
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.43 E-value=4.3e-14 Score=150.28 Aligned_cols=59 Identities=49% Similarity=0.785 Sum_probs=54.7
Q ss_pred ccccCCC-CCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhc
Q 004556 2 VECSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 60 (745)
Q Consensus 2 ~ALSkgK-~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK 60 (745)
.+|+.+. ..|||||+||||+|||++|||+++|+||+||+|...+++||++||+||+|||
T Consensus 269 ~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 269 SALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 4566653 5999999999999999999999999999999999999999999999999986
No 27
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.41 E-value=6.7e-14 Score=156.50 Aligned_cols=66 Identities=39% Similarity=0.629 Sum_probs=60.9
Q ss_pred CccccCCCCCCccCCCChhhhccccccCC-CCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGG-NARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 67 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGG-NSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~ 67 (745)
|+||.+. ..|+|||.||||.+|.|||=| |+|||||+||||.....+.|+|||+||+|+|++.....
T Consensus 480 IRaLg~n-k~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 480 IRALGRN-KSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HHHhcCC-CCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 7889664 789999999999999999988 99999999999999999999999999999999876544
No 28
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.39 E-value=7.2e-14 Score=162.35 Aligned_cols=68 Identities=31% Similarity=0.571 Sum_probs=63.4
Q ss_pred CccccCCCCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccc
Q 004556 1 MVECSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69 (745)
Q Consensus 1 I~ALSkgK~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN 69 (745)
|.||+. +..||||||||||+|||++|||++||.|+++|||...++.||+++|+||.|++.+...+..-
T Consensus 580 i~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 580 ISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred HHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 567877 79999999999999999999999999999999999999999999999999999998876653
No 29
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.15 E-value=1.3e-10 Score=133.64 Aligned_cols=62 Identities=31% Similarity=0.508 Sum_probs=58.2
Q ss_pred CCCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccc
Q 004556 8 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 69 (745)
Q Consensus 8 K~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN 69 (745)
.+.+|||||||||+++|.+|.|+.+.+||+||+|.+.+|+|+++.|+||.-|+.|.....++
T Consensus 382 s~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 382 SQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred ccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 34799999999999999999999999999999999999999999999999999998876664
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.42 E-value=0.74 Score=47.78 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=54.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 71 VMSDKALVKHLQRELSRLENELRGSGPVFI--TPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 71 v~~~kalIk~LqkEIa~LesEL~s~~~~~s--~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
.++....+..+++|++.|+++|........ ..++...+.+.+..+.+|++++.+|++++..++.+++.|..+..+.+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999988765421 22234455566667777888888888888888887777666655443
No 31
>PRK04406 hypothetical protein; Provisional
Probab=79.87 E-value=18 Score=32.15 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 78 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
+..+...|..|+..+. ..+.-|+.|.+.+.+.+++++.++.++..|.+++....
T Consensus 6 ~~~le~Ri~~LE~~lA----------------fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLA----------------FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677777776654 33445666666666667777777777776766665543
No 32
>PRK02119 hypothetical protein; Provisional
Probab=76.92 E-value=23 Score=31.18 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 78 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
+..+...|..|+..+. ..+..|+.|.+.+.+.+++++.++.++..|.+++.+..
T Consensus 4 ~~~~e~Ri~~LE~rla----------------~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIA----------------FQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666666553 33445666666666666666666666666666665543
No 33
>PRK04325 hypothetical protein; Provisional
Probab=73.86 E-value=27 Score=30.82 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 81 LQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
+...|..|+..+. ..+.-|+.|.+.+.+.+++++.++.++..|.+++.+..
T Consensus 7 ~e~Ri~~LE~klA----------------fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLA----------------FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666665553 33444566666666666666666666666666555543
No 34
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=72.83 E-value=22 Score=35.52 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
...++|++|+..|+.|++.... .+..+.--..++++.++++|++++.+++...+..+......+.--
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~----qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~ 106 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISA----QDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWV 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-T----TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988643 233444445688899999999999999999988888777666543
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.52 E-value=12 Score=40.52 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
...+.+++++...++.+|...... ..+......+.+.+|.+.+.++++|+.+++.+...|.+....+++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~q--i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQ--IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777665443 233455666777777777777777777777777777766665555
No 36
>PRK11637 AmiB activator; Provisional
Probab=70.77 E-value=21 Score=40.54 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
+.+.+|..++.++.+++.++..++.+++.+...+
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 37
>PF14282 FlxA: FlxA-like protein
Probab=67.83 E-value=32 Score=32.13 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
...|..|+++|..|..+|......... -.++++.++..|..+|..|+.++..++.+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-----DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999887653111 1234556666777777777777776666554443
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.82 E-value=19 Score=31.16 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
..+..|+.|...+.+.+++++.++.+++.|.+++.+..
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666666666666666666666544
No 39
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.59 E-value=47 Score=29.37 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
.|..|+.++..|+.+-. ....+++.|+.++.+|+.+....+.++..|...+.
T Consensus 19 ti~~Lq~e~eeLke~n~----------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN----------------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666532 33466788888888999888888888888877664
No 40
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.98 E-value=34 Score=30.06 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
.+.-|+.|.+.+.+.+++++.++.++..|.+++++..
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666666777777777777777766666544
No 41
>PRK00846 hypothetical protein; Provisional
Probab=64.45 E-value=53 Score=29.57 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 80 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
.+...|..|+..+. ..+.-|+.|.+.+.+.+++++.++.+++.|..++.+.+
T Consensus 10 ~le~Ri~~LE~rlA----------------fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLS----------------FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666665543 33445666666666666666666666666666666655
No 42
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.99 E-value=16 Score=43.62 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 109 REKDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 109 ~Eke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
+.++..|..|++++.+-....+.++.++..|.
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554
No 43
>PRK00736 hypothetical protein; Provisional
Probab=63.64 E-value=35 Score=29.62 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
..+.-|+.|.+.+.+.+++++.++.+++.|.+++.+..
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666666666666666666666666666665543
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.77 E-value=26 Score=42.71 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRGSGPVF------------ITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~------------s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
.+..|..+|++|+.+|...+... ....+...|..+..+++.|+.++..|..++..-+..++.|+++++
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998876531 112234456667777777777777777777776766777777766
Q ss_pred CCC
Q 004556 145 KGS 147 (745)
Q Consensus 145 ~~~ 147 (745)
+.+
T Consensus 499 eE~ 501 (697)
T PF09726_consen 499 EER 501 (697)
T ss_pred HHH
Confidence 654
No 45
>PRK11637 AmiB activator; Provisional
Probab=62.34 E-value=21 Score=40.41 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
..+|..++.++..++.+++.++.++..+...+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 46
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.10 E-value=85 Score=28.64 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREK------------DLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Ek------------e~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
...+..|+.++..|+..++...+.....-....|... ..+.+.+..++..|+.+-..+..+...|.++
T Consensus 18 ~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 18 QQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999988876642211112222222 2233346677777777777777777777766
Q ss_pred hc
Q 004556 143 AG 144 (745)
Q Consensus 143 v~ 144 (745)
+.
T Consensus 98 ~~ 99 (100)
T PF01486_consen 98 IE 99 (100)
T ss_pred hc
Confidence 54
No 47
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=59.32 E-value=6.3 Score=46.97 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHhhhccccceehhheeeeecCCCCCce--EEEEeehhhh
Q 004556 570 FKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSI--YMEVEQRRLS 616 (745)
Q Consensus 570 F~~~q~eIieLW~~C~VslvHRTyFfLLFkGd~~D~i--YmEVE~RRLs 616 (745)
.++.|.+|-+||+.|++|--.|..|.-.|-.+.++.+ -+|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998777755555444 3888888864
No 48
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.06 E-value=84 Score=28.07 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSAESP 151 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~~s~~ 151 (745)
..+.-|+.|...+.+.+..++..+.++..|.+++++-+.+..
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345567777777788888888888888888888888776553
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.75 E-value=58 Score=32.31 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 004556 78 VKHLQRELSRLENELRGSGP 97 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~ 97 (745)
+..++.++..|+++|.....
T Consensus 88 l~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444443
No 50
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.73 E-value=75 Score=28.35 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
.|.-||-||..|+.+-.+ +.....+....++.|+.+.++|+.+-..-+.+++.|.-++.
T Consensus 19 TI~LLQmEieELKEknn~---------l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 19 TITLLQMEIEELKEKNNS---------LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHhhH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 577788888888876443 23344455666777888888888887777777777765543
No 51
>PRK00295 hypothetical protein; Provisional
Probab=58.17 E-value=46 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
+..|+.|.+.+.+.+++++.++.++..|.+++.+.
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555443
No 52
>PRK00295 hypothetical protein; Provisional
Probab=54.80 E-value=89 Score=27.18 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 83 RELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 83 kEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
..|..|+..+... ...+.+....+-+..++|..|+.++..+..++..+..
T Consensus 5 ~Ri~~LE~kla~q---------E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 5 ERVTELESRQAFQ---------DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555432 3455566777778888888888888888888877763
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.33 E-value=34 Score=35.74 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 76 ALVKHLQRELSRLENELRGSGPVF--ITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~--s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
..+..++.+++.+..++.+..... ..........+.+.++++|++++..++.+++.++.+++.+.+.+
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544433222110 01123455666777788888888888888888777777766544
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.24 E-value=43 Score=32.33 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 115 IEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 115 IekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
......++..|+.+++.++.+.+.+.+.+|.
T Consensus 63 ~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667777888888888888888887775
No 55
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.43 E-value=81 Score=27.84 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
..|.+|+.|-..|-..-. .....++.....+..++..+..|...++....++..|...+..
T Consensus 12 e~Ia~L~eEGekLSk~el---------~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKEL---------KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555543211 1244566666677777888888888888888888877776543
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.37 E-value=68 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 004556 79 KHLQRELSRLENELR 93 (745)
Q Consensus 79 k~LqkEIa~LesEL~ 93 (745)
..|..++..|++...
T Consensus 187 ~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 187 AELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555554433
No 57
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.35 E-value=1.3e+02 Score=31.76 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=56.3
Q ss_pred cceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccc-----cCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHH
Q 004556 32 RTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIV-----MSDKALVKHLQRELSRLENELRGSGPVFITPDSVS 106 (745)
Q Consensus 32 KT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v-----~~~kalIk~LqkEIa~LesEL~s~~~~~s~~el~~ 106 (745)
...|.+-|.+ ..++.-++.|. ....|......-.+ .+-.+.++.++.+.++|.+-|.....
T Consensus 95 ~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~--------- 160 (262)
T PF14257_consen 95 SASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT--------- 160 (262)
T ss_pred eEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------
Confidence 4445555544 45787777775 22223222221111 12234667777777777776664322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
-..+-+++.++.+.+.+++.++.++..|.+++.=+
T Consensus 161 -----~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 161 -----VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 23355667777888888888888888888776654
No 58
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=49.09 E-value=71 Score=30.27 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 79 KHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 79 k~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
..|+.++.-|+.-+-.-... ...+...|++++..+.+++.|+.-|.=.++++..+++.|...+...
T Consensus 8 sKLraQ~~vLKKaVieEQ~k--~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAK--NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555544332221 3345667778888888888888888888888888888777777644
No 59
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.03 E-value=59 Score=37.54 Aligned_cols=68 Identities=19% Similarity=0.096 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
+..|+.|+.||.+|+..|...... ....+...-.+-..+++++.+|++.+..--.+.+.|-+++.+..
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~-----~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKS-----YQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 468999999999999999765332 22333333333344566666666666655555555655555544
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.66 E-value=1.3e+02 Score=30.56 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
..|..|+.++..|+.++.. +...++++...++.+..|+..|+-+...++.++..|.+
T Consensus 116 ~~l~~l~~~~~~L~~~~~~---------l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKD---------LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666543 45667777777777777777777666666666665554
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.86 E-value=58 Score=39.07 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 78 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
+..++.++..+..+|...........+...+.+.+.++.+++.++..++.++..+..+++.+.+++.
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555433321122234445555666666666666666666666666666655553
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.75 E-value=49 Score=32.57 Aligned_cols=64 Identities=28% Similarity=0.399 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 80 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
.|.+.|..|+.+|...... .......|++.+...+.++..+..|..+.+..+.+++.|..++..
T Consensus 77 ~l~rriq~LEeele~ae~~--L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKK--LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444444444443222 112234455555556666666666666666666666666655543
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.32 E-value=1.3e+02 Score=27.28 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
.|.-||.||..|+.+-.. +...........+.++.++.+|+.+...-+.+++.|.-++.
T Consensus 19 tI~LLqmEieELKekn~~---------L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 19 TITLLQMEIEELKEKNNS---------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456667777777665221 22222233334455777888888888888888777766553
No 64
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.03 E-value=42 Score=36.35 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSG 96 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~ 96 (745)
..|..|.+||++|+..|.+..
T Consensus 225 V~i~~lkeeia~Lkk~L~qkd 245 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 578999999999999987753
No 65
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.10 E-value=49 Score=39.79 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
++.+++.++.+|..|+..+.....++++|.+.+....
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999887654
No 66
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.53 E-value=93 Score=35.12 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
+-...++|+.++.++..+.+.. ..++..-.++.+.+++.|+.+...|+...+-+....++...
T Consensus 219 lR~r~eeeme~~~aeq~slkRt--~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRT--EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5567777888887777665443 22233334455555556666666666666666655555333
No 67
>PRK00736 hypothetical protein; Provisional
Probab=43.90 E-value=1.6e+02 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 106 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 106 ~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
..+.++...+-+..++|..|+.++..+..++..+..
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566677777888888888888888877766543
No 68
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.67 E-value=1e+02 Score=34.51 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----C-------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 75 KALVKHLQRELSRLENELRGSGP-----V-------FITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~-----~-------~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
+.++.+|+.+-..|+........ + .....+...+.+..+++..|..++..|++.+..++..+.-|++.
T Consensus 29 KlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 29 KLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 45777888777777776554331 0 12344577889999999999999999999999999999999998
Q ss_pred hcCCC
Q 004556 143 AGKGS 147 (745)
Q Consensus 143 v~~~~ 147 (745)
+...+
T Consensus 109 la~~r 113 (319)
T PF09789_consen 109 LARQR 113 (319)
T ss_pred HHhhh
Confidence 88765
No 69
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.59 E-value=97 Score=26.73 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 104 SVSVLREKDLRIEKLEKEVDELTMQRDLART 134 (745)
Q Consensus 104 l~~~L~Eke~eIekLekEi~eLq~qld~aq~ 134 (745)
....|++.+..+..|..+|..|+.+++.++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556777777777777777777777776654
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.30 E-value=73 Score=37.32 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 114 RIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 114 eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
+..++.++..+|+.++..++..+++|.+++.
T Consensus 110 ~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 110 ETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777763
No 71
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.02 E-value=1.2e+02 Score=33.48 Aligned_cols=116 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred CCCccCCCChhhhccccccCCCCcceEEEecCCCCcchHHHHHHHHhHHHhcccccccccccc---cC--HHHHHHHHHH
Q 004556 9 NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIV---MS--DKALVKHLQR 83 (745)
Q Consensus 9 ~~HIPYRDSKLTrLLQdSLGGNSKT~MIatVSPs~s~~eETlsTLrFAsRAK~Ikn~a~VN~v---~~--~kalIk~Lqk 83 (745)
+.|-+|..|.+. ..|=.|.||-. -.||.. ...-+|..|.-+--.+|.-.+- +- ....|++|+.
T Consensus 8 ~~~~~yg~ss~~---SSsnSgS~KgS---d~Sp~~------rr~~rY~~C~dNHGikPP~PEQYLTPLQQKEV~iRHLka 75 (305)
T PF15290_consen 8 NIRDSYGPSSTP---SSSNSGSCKGS---DSSPTM------RRSGRYMSCGDNHGIKPPNPEQYLTPLQQKEVCIRHLKA 75 (305)
T ss_pred CCcccccCcCCc---ccCCCccccCC---CCCCCC------CCCCceeecccCCCCCCCCHHHhcChHHHHHHHHHHHHH
Confidence 456667776543 23334444432 233322 2235677776655555544431 11 1134555555
Q ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHhcC
Q 004556 84 ELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEV-----D--ELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 84 EIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi-----~--eLq~qld~aq~eie~L~q~v~~ 145 (745)
.++.-+..|... ...+.++..++.+|++.+ . +-+-.++.++++|++|.+.|.-
T Consensus 76 kLkes~~~l~dR---------etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 76 KLKESENRLHDR---------ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444331 223333444444443333 2 2334466677777777776654
No 72
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=42.69 E-value=88 Score=30.90 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCCCC-----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 82 QRELSRLENELRGSGPVFI-----------TPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 82 qkEIa~LesEL~s~~~~~s-----------~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
++||-+|+..-+..+.... ..++...-.+...++++|..|+.++..+++.++...+.|..-
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888888777655321 112233333445566666667777777777777666666553
No 73
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.60 E-value=94 Score=32.99 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=6.2
Q ss_pred HHhHHHhcccc
Q 004556 53 LLFASCAKEVT 63 (745)
Q Consensus 53 LrFAsRAK~Ik 63 (745)
|.|...+++|.
T Consensus 57 llfiDsvr~i~ 67 (216)
T KOG1962|consen 57 LLFIDSVRRIQ 67 (216)
T ss_pred HHHHHHHHHHH
Confidence 45566666554
No 74
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=41.92 E-value=1.6e+02 Score=28.97 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFI--TPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s--~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
..+|.+|++ +..|+..-.......+ ...+...+.+.+..+..++.-+++|+.+++..+.++..|.+++.+..
T Consensus 48 ~~vVsEL~~-Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 48 EAVVSELRR-LSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHH-HHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556543 5556655544433322 22345666788888888888899999999999999988888887654
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.92 E-value=72 Score=34.26 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 82 QRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 82 qkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
...+.+|+..+..... ...++..++...+.+|.+|+-.++++..++++++.+..++-..+.
T Consensus 39 ~~r~~~le~~~~~~~~--~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 39 EDRVTQLERISNAHSQ--LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555543321 123445666677777777777777777777777776666655544
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.36 E-value=1.1e+02 Score=26.58 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 81 LQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
+...|..|+..|... ...+.+....+....++|..|+.++..+..++..+...
T Consensus 2 le~Ri~~LE~~la~q---------e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 2 LEERIEELEIKLAFQ---------EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345556666655432 34566777778888888888999988888888887743
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=41.12 E-value=65 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 004556 78 VKHLQRELSRLENELRGS 95 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~ 95 (745)
..+|..+|..|+.++++.
T Consensus 38 na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666555544
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.52 E-value=90 Score=36.41 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
...+++..++++..+|...+ .....+.+..+.-+.++++..+.++..+...+.++++|..++.|-
T Consensus 383 k~~q~q~k~~k~~kel~~~~-----E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEER-----EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555666666666655432 111222333444445566666667777777777777777777663
No 79
>PRK09039 hypothetical protein; Validated
Probab=39.58 E-value=1.4e+02 Score=33.52 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 004556 76 ALVKHLQRELSRLENELRGS 95 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~ 95 (745)
..|..|+.||+.|+.+|...
T Consensus 137 ~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666667777776665543
No 80
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.57 E-value=2.2e+02 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 105 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 105 ~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
.......+..++.++..++.|.++.+.++.++.++.+.+..
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777666543
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.53 E-value=30 Score=34.30 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 116 EKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 116 ekLekEi~eLq~qld~aq~eie~L~q 141 (745)
++|...|.+|+.++..++.+++.|..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666665554
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.89 E-value=1.8e+02 Score=29.69 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 004556 79 KHLQRELSRLENELRGSG 96 (745)
Q Consensus 79 k~LqkEIa~LesEL~s~~ 96 (745)
++|..+|..-+.+-+...
T Consensus 57 kqY~~~i~~AKkqRk~~~ 74 (161)
T TIGR02894 57 KQYEEAIELAKKQRKELK 74 (161)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 456666665555554443
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.71 E-value=1.3e+02 Score=28.99 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVE 137 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie 137 (745)
..+.++..++..+..|..|+..+..+++
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555566666555555554
No 84
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.57 E-value=1.4e+02 Score=31.74 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 004556 76 ALVKHLQRELSRLENELRGSGPV-----FITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG-AGKGS 147 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~-----~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~-v~~~~ 147 (745)
..|.+|++|+..|..|-.....- .....+...+++...+.++.++.+..+..+...+..+++.+++. +|-..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46777777777776664332110 00112234445555555566666666777777777777777777 55543
No 85
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.54 E-value=1.6e+02 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
.+.+...+++.|++++..|.++....+...+.|...|..
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777666665543
No 86
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.38 E-value=91 Score=37.23 Aligned_cols=17 Identities=47% Similarity=0.712 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 004556 78 VKHLQRELSRLENELRG 94 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s 94 (745)
...|++++.+|+.+|..
T Consensus 166 ~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 166 VEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555666555544
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.04 E-value=1.3e+02 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 004556 77 LVKHLQRELSRLENE 91 (745)
Q Consensus 77 lIk~LqkEIa~LesE 91 (745)
+|+.|+++|+.++..
T Consensus 28 lIksLKeei~emkk~ 42 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445544444443
No 88
>PRK11020 hypothetical protein; Provisional
Probab=37.03 E-value=2.2e+02 Score=27.63 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDL 131 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~ 131 (745)
++.|++|...+..++.+|...... +....+.+...+++.+.++|..|+.+...
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~r----gd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLR----GDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777666554332 23456667777888888888888766554
No 89
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.87 E-value=1.2e+02 Score=30.67 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
..+++++++++++.+.+.+.++.|.+.|.+
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444443
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.81 E-value=1.2e+02 Score=32.52 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=9.5
Q ss_pred ccCccccccccccCC
Q 004556 369 TRSRSCKACLMTSYS 383 (745)
Q Consensus 369 ~rS~scr~~~~~~~~ 383 (745)
.+-+.|..++|..|.
T Consensus 195 l~g~~C~GC~m~l~~ 209 (239)
T COG1579 195 LEGRVCGGCHMKLPS 209 (239)
T ss_pred ecCCcccCCeeeecH
Confidence 445577777777643
No 91
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.47 E-value=94 Score=37.37 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
..+..+..++..++.+|...............+.+....++.+++++.+++.++.....+++.+.+.+..
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777666554432222234455555556666666666666666666666666666554
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.29 E-value=3e+02 Score=26.68 Aligned_cols=19 Identities=53% Similarity=0.721 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 004556 76 ALVKHLQRELSRLENELRG 94 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s 94 (745)
.++.+|+.+|.+++.|+..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~ 34 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELAS 34 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655544
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.13 E-value=73 Score=36.85 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004556 107 VLREKDLRIEKLEKEVDELTMQR 129 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~ql 129 (745)
.+.+....|..++..++.|+.|.
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
No 94
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.02 E-value=1.6e+02 Score=29.56 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 81 LQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
+...+.+|+...+....+.....+...+.+...+++.+++++++++++++.++..+..-.++++-
T Consensus 21 ~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgv 85 (151)
T PF14584_consen 21 LNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGV 85 (151)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEE
Confidence 34455555555555544444445677777777778778888877777777777766655555554
No 95
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.58 E-value=1.9e+02 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 118 LEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 118 LekEi~eLq~qld~aq~eie~L~q 141 (745)
++-++..|+++++..+..+.++.+
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 96
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.32 E-value=2.1e+02 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
.+.+....+..+-+|+.+|+.+++.++..+.++.+
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555556666666666666666666655554
No 97
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.30 E-value=1.3e+02 Score=35.04 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 105 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 105 ~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
.+.+.....++.++..++.++..+++.++.+++.|.+++..-
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666677777777777777777777776666443
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.02 E-value=89 Score=34.55 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=3.5
Q ss_pred cccceeEEcC
Q 004556 267 YKNVGCVQMG 276 (745)
Q Consensus 267 ckEV~Cie~~ 276 (745)
+.++=||...
T Consensus 138 ~n~~F~I~hd 147 (314)
T PF04111_consen 138 YNDTFHIWHD 147 (314)
T ss_dssp TTTT--EEEE
T ss_pred hhceeeEeec
Confidence 3444445443
No 99
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.64 E-value=1.1e+02 Score=27.08 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
.++.-..+|+.|..+-.. +....-.....|.+|+..+.++..++..+..+++.+...+.
T Consensus 6 ~l~EKDe~Ia~L~eEGek---------LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEK---------LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHhHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555332 22233334455666666666666666666666666655543
No 100
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.48 E-value=89 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLRE--KDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~E--ke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
.-...|..+|.+|.+++++.....+. ....+++ ...-+++|+++|.+|.+.-...+.++..+..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~--veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSY--VEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777665443221 1222222 2334556666666666666666666655544
No 101
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=33.42 E-value=2.6e+02 Score=24.30 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
.+...|..++..+..+|+.. ....+..+-..-.+|..|+..+.+|...+..+...++.+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~-----V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKL-----VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778888888888765 2233445555566777788888888777777777766654
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=33.34 E-value=1.6e+02 Score=24.74 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 108 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 108 L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
+.+.+.++..|+.++.+|..++..++.++..|...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666665554
No 103
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.34 E-value=85 Score=28.82 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 115 IEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 115 IekLekEi~eLq~qld~aq~eie~L~q 141 (745)
.+.+++|...|+.++...+.++..|++
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 455678888888888888888887777
No 104
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.26 E-value=1.7e+02 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 117 KLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 117 kLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
-|+++|++|+..+..++..|++|.+...+
T Consensus 159 pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 159 PMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 58999999999999999999999865544
No 105
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.12 E-value=1.4e+02 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 104 SVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 104 l~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
....+.+...++..+..++.+|+.+++..+.+-+.|.+.+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777788888888888889998888888888887654
No 106
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.97 E-value=3.1e+02 Score=24.17 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 81 LQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 81 LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
+...|..|+..+... ...+.++...+-+..++|..|+.++..+..++..+..
T Consensus 6 ~e~Ri~~LE~~lafQ---------e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQ---------EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666665432 3455667777788888888888888888877776654
No 107
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.97 E-value=94 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
...+..++++|+++|+++++.++.+++.|.++...-
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999888877543
No 108
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=32.90 E-value=1.7e+02 Score=31.18 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 79 KHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 79 k~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
++|+.-+..-.-||..... .....++.++.++.+|..-+..-.+++|+++.+++.|.
T Consensus 4 EELRq~Ll~TTlELE~~k~-----~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 4 EELRQKLLYTTLELEATKM-----EANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544321 12445667777788888888888899999999998887
No 109
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.18 E-value=76 Score=37.24 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRG 94 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s 94 (745)
.+.+-|...+.|+.+|..
T Consensus 70 ALteqQ~kasELEKqLaa 87 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEE 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 110
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.11 E-value=3.2e+02 Score=24.38 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 104 SVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 104 l~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
........+..++.++.++..|..++..+..+++.+...+..-
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999988888777654
No 111
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.56 E-value=97 Score=32.39 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 79 KHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 79 k~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
+.+.+|+..|+..+...... ...+....+..+.+...+..+|..|+.+......+.+.+.+.+.+
T Consensus 63 K~l~eEledLk~~~~~lEE~--~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEE--NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 44566666666655544322 223444555556666666666666666655555555555444433
No 112
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.45 E-value=1.9e+02 Score=30.39 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 108 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 108 L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
+.+.+..+..++.++.+++.+++..+.++.++.+.+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555554443
No 113
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.32 E-value=2e+02 Score=30.85 Aligned_cols=67 Identities=30% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-Ccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 77 LVKHLQRELSRLENELRGSGPVFI-TPD-----SVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s-~~e-----l~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
.|+.|..++..|+.++........ ... +...+.+....|..+..+...|..+++.++.+++.+..++
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~ 91 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 466777777777777776655421 111 1233333344444444444444444444444444443333
No 114
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.23 E-value=4.1e+02 Score=24.82 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
.+......+..++.+++.... ...+...+..+.+++.++..+..+++......+-|.+
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt-------~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPT-------RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888888888887654 3455566777777888888888877777776665443
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.22 E-value=1.7e+02 Score=32.27 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 004556 80 HLQRELSRLENELRGS 95 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~ 95 (745)
.+...-+.|+.++...
T Consensus 181 ~l~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 181 KLRERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.09 E-value=1.9e+02 Score=32.04 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004556 77 LVKHLQRELSRLENELRG 94 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s 94 (745)
.++.|++|...|..+|..
T Consensus 51 el~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEE 68 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 117
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.95 E-value=1.9e+02 Score=24.24 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 108 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 108 L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
+.+++..+..|+.++..|..++..+..++..|...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555543
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.70 E-value=1.8e+02 Score=37.42 Aligned_cols=61 Identities=28% Similarity=0.423 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
-++.|.++|..+++++.. .+...+.+.+.+++.|+++++.++.++..+..+++++.+.+.+
T Consensus 373 ~~d~l~k~I~~~~~~~~~--------~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNN--------ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555521 1233444555555555555555555555555555555554443
No 119
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=30.67 E-value=1.4e+02 Score=34.95 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=46.3
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 65 NAQVNIVMSDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 65 ~a~VN~v~~~kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
+|++......++.+.+|+.+|..|..-+..+ -....+++++|.+++++-+.-+-.++.+++.|.+.+.
T Consensus 558 k~k~e~~~~~k~s~delr~qi~el~~ive~l------------k~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 558 KAKVETDDVKKNSLDELRAQIIELLCIVEAL------------KKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 3444444444567888888888887655433 2344567778888888777777888888888877654
No 120
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=30.38 E-value=3e+02 Score=26.47 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHhcC
Q 004556 47 EQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGS 95 (745)
Q Consensus 47 eETlsTLrFAsRAK~Ikn~a~VN~v~~~kalIk~LqkEIa~LesEL~s~ 95 (745)
+..++.-.||+.+=...|.... ...+-.+.+++|..-|+.+..+++..
T Consensus 5 ~~dFd~~~fan~ll~~~~~~~~-~~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 5 SPDFDPVQFANDLLKSTNNNSD-SELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred CCCCCHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888877665554432 34455667888888888888887764
No 121
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.71 E-value=90 Score=35.83 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFIT-PDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~-~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
...++++.++..|+.+.+........ ........+...+...+.+++++|+.++..++.++.++...+..-
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34456666666666665443221000 000001223444566777788888888888888877777766654
No 122
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.66 E-value=1.5e+02 Score=25.22 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSG 96 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~ 96 (745)
+.+..|+++++.++.++....
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665543
No 123
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=29.33 E-value=1.4e+02 Score=32.73 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 84 ELSRLENELRGSGPV-----FITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 84 EIa~LesEL~s~~~~-----~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
.|+.|+.+|....+. ++..++...+.+++..++.|...|--|+++++..+.+|+.|.+..
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544332 224456677888888888888888888888888887777665543
No 124
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.18 E-value=6.5e+02 Score=29.54 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004556 76 ALVKHLQRELSRLENELR 93 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~ 93 (745)
.++..+.+|++.++.+..
T Consensus 143 ~l~~~ld~e~~~~~~e~~ 160 (447)
T KOG2751|consen 143 VLLNKLDKEVEDAEDEVD 160 (447)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.14 E-value=2.5e+02 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004556 119 EKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 119 ekEi~eLq~qld~aq~eie~L~q 141 (745)
+..|++...+....+.+|.++.+
T Consensus 238 ~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 238 ESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 126
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.65 E-value=3.5e+02 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
.+.+++.++++...|..+++.++.+.++|.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 127
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.45 E-value=1.9e+02 Score=31.13 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 115 IEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 115 IekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
+..+..++.+|+.++..++.++..+.+.+
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333
No 128
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.18 E-value=4.8e+02 Score=29.09 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
.|+-|+..+..|+..+.. +...++++-.+.+.++..+..|+.+++.++.++.+..+.|.++.
T Consensus 113 qvd~Lkd~lee~eE~~~~---------~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khG 174 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQ---------LQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345555566655555443 33445567777888888889999999999999988888776653
No 129
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=27.96 E-value=3.3e+02 Score=24.81 Aligned_cols=33 Identities=21% Similarity=0.050 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 104 SVSVLREKDLRIEKLEKEVDELTMQRDLARTEV 136 (745)
Q Consensus 104 l~~~L~Eke~eIekLekEi~eLq~qld~aq~ei 136 (745)
+-...++.-.+|..++.+|..|++++..+..++
T Consensus 52 lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 52 LPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888888877766654
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.63 E-value=2.5e+02 Score=29.68 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 109 REKDLRIEKLEKEVDELTMQRDLARTEV 136 (745)
Q Consensus 109 ~Eke~eIekLekEi~eLq~qld~aq~ei 136 (745)
+..+..+..+++++.+|+.+++......
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544433
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.61 E-value=3.5e+02 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
..+-..|++++.+++..++.+..+-.-|..++.
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556788888888888888888777777664
No 132
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.47 E-value=5.3e+02 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 113 LRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 113 ~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
....++.+...+|..++..++.++..|...+...
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555555554443
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.26 E-value=1.5e+02 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 105 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 105 ~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
.....+.+.+|.+++.+|.+|+..+...+.-+..-.+.+..
T Consensus 72 ~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 72 QKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666665555555555444444433
No 134
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=27.19 E-value=49 Score=34.64 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=36.1
Q ss_pred HhhCcCCCCcchh-------HHHHhhcCCcc--chhHHHH------HHHHHHHHhhcc---CCC-hhhhhhhc
Q 004556 669 LKWGIGLQTKHRS-------LQLAHLLWTSK--DLNHVAE------SAAIVSKLVTFV---KPD-QAFREMFG 722 (745)
Q Consensus 669 ~KWgI~l~sK~Rr-------LQla~rLWt~t--dm~HVrE------SA~lVAKLvgf~---e~g-~a~kEMFg 722 (745)
-+|.||..-|.|- .|-...+=..+ ||+.|-+ --+|.-|||.|| |+| +-+|+||.
T Consensus 115 ~~~kiPpePkg~~s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNPsiydkLi~FcdI~E~gTnypkdm~D 187 (238)
T KOG2959|consen 115 PHWKIPPEPKGEVSTELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNPSIYDKLIDFCDIKEPGTNYPKDMWD 187 (238)
T ss_pred ccccCCCCCCCcccHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCcHHHHHHHHHhccccccccCChhhcC
Confidence 4799999988763 33333333444 6666655 348999999999 455 56777764
No 135
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=27.10 E-value=2.7e+02 Score=33.89 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Q 004556 74 DKALVKHLQRELSRLENELRGSGPVFIT------PDSVSVLREKDLRIEKLE------------------KEVDELTMQR 129 (745)
Q Consensus 74 ~kalIk~LqkEIa~LesEL~s~~~~~s~------~el~~~L~Eke~eIekLe------------------kEi~eLq~ql 129 (745)
+++.|..+++|+..|+.++......... ......|..++.+|.+|- .+|..|..++
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999876443211 112334555666666553 4445566666
Q ss_pred HHHHHHHHHHHHHhcC
Q 004556 130 DLARTEVENLLRGAGK 145 (745)
Q Consensus 130 d~aq~eie~L~q~v~~ 145 (745)
..+...+++|..++..
T Consensus 327 ~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 327 KAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666654
No 136
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.79 E-value=1.2e+02 Score=35.52 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 78 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENL 139 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L 139 (745)
.+.|++|+++|+.......... ...+...-.+...+.++++.++.+++.+++.++.+++.+
T Consensus 82 N~~l~~eN~~L~~r~~~id~~i-~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 82 NEALKAENERLQKREQSIDQQI-QQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555544433322210 111223334666677778888888888888887766543
No 137
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=6.1e+02 Score=24.77 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 106 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 106 ~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
....+.+...+-++.+++.|+++-+..+.+++.|...+.+.-
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888889999999999999998888888776653
No 138
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.65 E-value=2.1e+02 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLAR 133 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq 133 (745)
.+...+.++..++.++..+......+.
T Consensus 78 ~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 78 QVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444444444333
No 139
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=26.47 E-value=40 Score=35.86 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHHHhh-CcCCCC--cchhHHHHhhcCCccchhHHHHHHHHHHHHhhccCCC---hhhhhhhccc
Q 004556 662 EQRENLFLKW-GIGLQT--KHRSLQLAHLLWTSKDLNHVAESAAIVSKLVTFVKPD---QAFREMFGLN 724 (745)
Q Consensus 662 eERe~ly~KW-gI~l~s--K~RrLQla~rLWt~tdm~HVrESA~lVAKLvgf~e~g---~a~kEMFgLn 724 (745)
.-=.++|.++ |+.+.. ++|||+.|..|=..+++ +-.-||-.+||-.+. .++|..||.+
T Consensus 36 ~~l~r~F~~~~g~s~~~yi~~~Rl~~A~~~L~~~~~-----~i~~iA~~~Gf~s~~~f~r~Fk~~~g~s 99 (289)
T PRK15121 36 WHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSR-----PILDIALQYRFDSQQTFTRAFKKQFAQT 99 (289)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHCCCCHHHHHHHHHHHHCcC
Confidence 3334566776 777764 67889888777666655 667789999998887 6899999964
No 140
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.13 E-value=2e+02 Score=32.08 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 79 KHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 79 k~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
++|++++..+..+.+..... .......+...+.++.+++.++++++...+.++.++..+...
T Consensus 2 ~el~~~~~~~~~~~r~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 63 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDK--AEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKV 63 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666554321 011123334444455566666666666666666666555443
No 141
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.02 E-value=2.1e+02 Score=31.65 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 75 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQR 129 (745)
Q Consensus 75 kalIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~ql 129 (745)
+..|+..+.++..++.+|...... ...+...++.+..+.++.++.++.|+.-+
T Consensus 111 k~aIq~i~~~~q~~~~~Lnnvasd--ea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 111 KSAIQAIQVRLQSSRAQLNNVASD--EAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778888888888888776543 23344556666666666666666665433
No 142
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.80 E-value=2.5e+02 Score=29.14 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSG 96 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~ 96 (745)
.+|.....||..|+..|+...
T Consensus 61 qll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776643
No 143
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.64 E-value=1.4e+02 Score=35.93 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 74 DKALVKHLQRELSRLENELRGSGPVFITPDS--VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 74 ~kalIk~LqkEIa~LesEL~s~~~~~s~~el--~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
+.+.+..|+.+|++|-.+|.+.......... ...|++ -..|+...++|+-..+.++.+++++.+.++..+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLee----K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEE----KEDLKQQLEELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999875432111111 223333 356778888999999999999998888887765
No 144
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.45 E-value=5.2e+02 Score=24.70 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
...+.+..++-++.+|+.|.++.+.++.++.++.+.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555544444443
No 145
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.38 E-value=95 Score=31.00 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLR---EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~---Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
+.+.+..+...|+.+|..... ++..++. -....|..+.+||..|+.++...+-+.+....+.+..
T Consensus 55 I~~~f~~~t~~LRqqL~aKr~-----ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 55 IHNDFYAQTSALRQQLVSKRY-----EYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 446666666666666654311 1111111 1245588888888888888888777666555555544
No 146
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.19 E-value=2.4e+02 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 004556 78 VKHLQRELSRLENELRGSG 96 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~ 96 (745)
+..++.++..|+.+|....
T Consensus 64 L~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666543
No 147
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.08 E-value=2e+02 Score=34.79 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=30.6
Q ss_pred ccCCCccccccCCCCChHHHHHHHHHHHHHhhhccccceehhheeeeecCCC
Q 004556 551 IGVDNIQEDFINHWEWPLEFKRLQREIIELWHACNVSLVHRTYFFLLFKGDP 602 (745)
Q Consensus 551 ~g~d~~~~~~~sp~~W~l~F~~~q~eIieLW~~C~VslvHRTyFfLLFkGd~ 602 (745)
.++.|+...-.|| ++-..|-..|..-.+.|.. -.+= |-+|=||-| ||
T Consensus 563 ~~lgp~Eppy~Sp-~y~rNfT~~~~~~y~~WN~-~~~P-fyl~p~lpf--dp 609 (907)
T KOG2264|consen 563 YLLGPLEPPYESP-SYARNFTEFQLYSYDFWNI-IMSP-FYLKPFLPF--DP 609 (907)
T ss_pred cccCCCCCCCCCc-hHhhhhhhhhhHHHHHhhh-cCCc-cccCccCCC--Cc
Confidence 3444444433344 4667899999999999974 3332 457778888 65
No 148
>PLN02320 seryl-tRNA synthetase
Probab=24.87 E-value=1.2e+02 Score=35.81 Aligned_cols=70 Identities=14% Similarity=-0.016 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
..+.++.++..|+++.+................+...+...+.+++..|+.++..++.+++++...+..-
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~ 170 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNM 170 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4455666666666665443221000000011233444566777888888888888888888777777654
No 149
>PRK13503 transcriptional activator RhaS; Provisional
Probab=24.73 E-value=96 Score=32.14 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=67.2
Q ss_pred hhhhhHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHhhCcCCCCcchhHHHHhhcCCccc
Q 004556 614 RLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRERHMLSQHVKKRFSREQRENLFLKWGIGLQTKHRSLQLAHLLWTSKD 693 (745)
Q Consensus 614 RLs~lk~~~~~g~~~~~~~~~~s~~SS~kaL~rERemL~k~m~krls~eERe~ly~KWgI~l~sK~RrLQla~rLWt~td 693 (745)
-+.||.+++++ ..|+..=++++.==+..|+|..++-+..--.+-| .++||+-|.+|=..++
T Consensus 176 ~~~~I~~~~~~---------~~tl~~lA~~~~lS~~~l~r~Fk~~~G~S~~~yi----------~~~Rl~~A~~LL~~~~ 236 (278)
T PRK13503 176 LLAWLEDHFAE---------EVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYL----------NRLRLLKARHLLRHSD 236 (278)
T ss_pred HHHHHHHhhcC---------CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHH----------HHHHHHHHHHHHHcCC
Confidence 34566666652 3577777777777778888888777665555543 4789999999988887
Q ss_pred hhHHHHHHHHHHHHhhccCCC---hhhhhhhccc
Q 004556 694 LNHVAESAAIVSKLVTFVKPD---QAFREMFGLN 724 (745)
Q Consensus 694 m~HVrESA~lVAKLvgf~e~g---~a~kEMFgLn 724 (745)
+ |.+-||.-+||-.+. .++|..+|.+
T Consensus 237 ~-----sI~eIA~~~GF~~~s~F~r~FKk~~G~T 265 (278)
T PRK13503 237 A-----SVTDIAYRCGFGDSNHFSTLFRREFSWS 265 (278)
T ss_pred C-----CHHHHHHHhCCCCHHHHHHHHHHHHCcC
Confidence 7 788899999999996 7999999975
No 150
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.64 E-value=2.5e+02 Score=36.84 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 80 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 80 ~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
.++++|..|+.++..........++...+...+.+++.+..++..++.+.+..+.++..|...+
T Consensus 803 ~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 803 DVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333222122334445555555566665556666666666666666664433
No 151
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.44 E-value=1.6e+02 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 004556 77 LVKHLQRELSRLENELRGSGP 97 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~ 97 (745)
.|..|+++|+.-+.+|..+..
T Consensus 195 ~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 195 SIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777766643
No 152
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.81 E-value=3.3e+02 Score=28.60 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
+...+...|+.+....+.+++.++.++..|.......
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~ 187 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEP 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555677777777777777777777777766554
No 153
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.70 E-value=2.6e+02 Score=31.32 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSAE 149 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~~s 149 (745)
+.|..|+.|+.+|+.+|...... ........-.+-..+..++..|+..+..-..+.+.|-+.+..+..+
T Consensus 229 shI~~Lr~EV~RLR~qL~~sq~e-----~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEss 297 (310)
T PF09755_consen 229 SHIRSLRQEVSRLRQQLAASQQE-----HSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESS 297 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999865332 1222223333346678888999999999999999999998887643
No 154
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=23.68 E-value=3.1e+02 Score=33.06 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 107 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 107 ~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
.+.+...+.+.++.+++++..+++.+..+++++.
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777777777776666555
No 155
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.55 E-value=2.4e+02 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004556 111 KDLRIEKLEKEVDELTMQRDL 131 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~ 131 (745)
.+.+++.|+.+++.|+...+.
T Consensus 46 l~~~n~~L~~eI~~L~~~~dy 66 (105)
T PRK00888 46 LKARNDQLFAEIDDLKGGQEA 66 (105)
T ss_pred HHHHHHHHHHHHHHhhCcHHH
Confidence 344455555555555543333
No 156
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.49 E-value=2.8e+02 Score=29.65 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 106 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 106 ~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
..|+....-|..|+..|++++.++...+..+..+...+
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666555544443
No 157
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.45 E-value=2e+02 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 114 RIEKLEKEVDELTMQRDLARTEVENLLRG 142 (745)
Q Consensus 114 eIekLekEi~eLq~qld~aq~eie~L~q~ 142 (745)
.+..++.++.++...++..+..++.|...
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443
No 158
>smart00338 BRLZ basic region leucin zipper.
Probab=23.45 E-value=2.1e+02 Score=23.98 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
+...+..|+.++..|..+...+..++..|...+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777766553
No 159
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.45 E-value=1.5e+02 Score=31.12 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-------------cchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 004556 78 VKHLQRELSRLENELRGSGPVFIT-------------PDSVSVLREKDLRIEKLE-------KEVDELTMQRDLARTEVE 137 (745)
Q Consensus 78 Ik~LqkEIa~LesEL~s~~~~~s~-------------~el~~~L~Eke~eIekLe-------kEi~eLq~qld~aq~eie 137 (745)
+-.|++|++.|+.+|......... .++.++|.-++.++..++ .-+..++..++..+.+++
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 004556 138 NLLRGA 143 (745)
Q Consensus 138 ~L~q~v 143 (745)
.|+..+
T Consensus 178 ~Le~~L 183 (195)
T PF12761_consen 178 GLESHL 183 (195)
T ss_pred HHHHHH
No 160
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.39 E-value=2.1e+02 Score=26.15 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
+...+...+..++..++.++..++.+++.+.-.+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444556667777777777777777776665443
No 161
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.25 E-value=2.3e+02 Score=23.76 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
+...++.|+.++..|..+.+.+..++..|.+.+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555543
No 162
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.08 E-value=3.2e+02 Score=35.59 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 143 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v 143 (745)
++..|..+|+.++..+...... ...+++++++|+.+++|+.+++.+-.. ..++..|...+
T Consensus 835 ~~~~l~~~i~~~E~~~~k~~~d------~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i 894 (1293)
T KOG0996|consen 835 LIEYLESQIAELEAAVLKKVVD------KKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKI 894 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhccCc------HHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
No 163
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.77 E-value=9.2e+02 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCC
Q 004556 110 EKDLRIEKLEKEVDELT----MQRDLARTEVENLLRGAGKGSA 148 (745)
Q Consensus 110 Eke~eIekLekEi~eLq----~qld~aq~eie~L~q~v~~~~~ 148 (745)
++..+++.+++.++..+ ......+.+++.|...+|-...
T Consensus 68 ~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V 110 (247)
T COG3879 68 TLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCC
Confidence 44445555555555555 3333444466667666665543
No 164
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.74 E-value=2.7e+02 Score=35.39 Aligned_cols=39 Identities=28% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCCCcchhHHHHhhcCCcc--chhHHHH---------HHHHHHHHhhccC
Q 004556 674 GLQTKHRSLQLAHLLWTSK--DLNHVAE---------SAAIVSKLVTFVK 712 (745)
Q Consensus 674 ~l~sK~RrLQla~rLWt~t--dm~HVrE---------SA~lVAKLvgf~e 712 (745)
+|+--|=||-||-+=-+.+ |-.|+-+ +|.+-+|=..|-|
T Consensus 977 elSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efee 1026 (1243)
T KOG0971|consen 977 ELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEE 1026 (1243)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677776665543 5444432 5666666666644
No 165
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.72 E-value=5.2e+02 Score=23.64 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
+.+..|..-|..|+.-+...-.. .....+.+.+++.|......|.++++.+..+.+.|..
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~------~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLER------DRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 45667777777777766543211 1222466677777888888888888888777766654
No 166
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.56 E-value=5e+02 Score=26.78 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004556 76 ALVKHLQRELSRLENELR 93 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~ 93 (745)
+.|.+|++.++.|+..+.
T Consensus 23 ~KV~qYr~rc~ele~~l~ 40 (182)
T PF15035_consen 23 AKVLQYRKRCAELEQQLS 40 (182)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356677777777777774
No 167
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.35 E-value=2e+02 Score=31.45 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.2
Q ss_pred hhhhcccccc
Q 004556 18 KLTRILQSSL 27 (745)
Q Consensus 18 KLTrLLQdSL 27 (745)
|+|.+|..+.
T Consensus 86 Kia~lLy~A~ 95 (267)
T PF10234_consen 86 KIASLLYSAM 95 (267)
T ss_pred HHHHHHHHHH
Confidence 5666666555
No 168
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.33 E-value=4.2e+02 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 108 LREKDLRIEKLEKEVDELTMQRDLARTEVENL 139 (745)
Q Consensus 108 L~Eke~eIekLekEi~eLq~qld~aq~eie~L 139 (745)
+.+.+..+..+-+|+..|+.+++.++..+.++
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555566666666555555544
No 169
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.33 E-value=2e+02 Score=31.82 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLAR 133 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq 133 (745)
.|..|+.++.++++..-.-++. ..+.+-.|+|..++|.+|+.-|+..+..+-.+.
T Consensus 90 EI~eLksQL~RMrEDWIEEECH--RVEAQLALKEARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECH--RVEAQLALKEARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 4444444444444443332222 122234566666666666655555554444443
No 170
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.89 E-value=5.5e+02 Score=25.41 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcch----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFITPDS----VS--VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~~el----~~--~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
.+..+|.++|..|+..+....+.....-. .. ........+.+|+++-..|+.|+...+-++++-.+.+..
T Consensus 15 E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk 90 (129)
T PF15372_consen 15 ELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHK 90 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999887664321100 00 112334445556666666666666666655554444443
No 171
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.78 E-value=2.1e+02 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 110 EKDLRIEKLEKEVDELTMQRDLARTEVENL 139 (745)
Q Consensus 110 Eke~eIekLekEi~eLq~qld~aq~eie~L 139 (745)
+...+++.++.++.+|+.+++.++.+++.|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444443
No 172
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=21.71 E-value=4.6e+02 Score=29.64 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 004556 73 SDKALVKHLQRELSRLENE 91 (745)
Q Consensus 73 ~~kalIk~LqkEIa~LesE 91 (745)
.|+.-|..|-+|++++-.+
T Consensus 5 ~dk~ri~~li~~la~~~~~ 23 (328)
T PF15369_consen 5 EDKRRIANLIKELARVSEE 23 (328)
T ss_pred hHHHHHHHHHHHHHHhhhH
Confidence 4566677777777766544
No 173
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.69 E-value=4.1e+02 Score=28.73 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.9
Q ss_pred ceEEEe
Q 004556 33 TAIICT 38 (745)
Q Consensus 33 T~MIat 38 (745)
.++|+|
T Consensus 60 lvlIAT 65 (290)
T COG4026 60 LVLIAT 65 (290)
T ss_pred EEEEee
Confidence 445554
No 174
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.68 E-value=5.6e+02 Score=29.46 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
.+..++.++...+.+|...+...... ..........++..++.++...+.++..++.++..|.+.++...
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~ 238 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGI-LPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEE 238 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45566666666666666553322111 11111234456778888888888888888888888888887543
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.59 E-value=4.1e+02 Score=28.53 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 111 KDLRIEKLEKEVDELTMQRDLARTEVENLL 140 (745)
Q Consensus 111 ke~eIekLekEi~eLq~qld~aq~eie~L~ 140 (745)
.+..|..++.++.+++.++.....+.++|.
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444443
No 176
>PLN02678 seryl-tRNA synthetase
Probab=21.54 E-value=1.1e+02 Score=35.70 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 76 ALVKHLQRELSRLENELRGSGPVFIT-PDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~~~s~-~el~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
..-++++.++..|+.+.+........ ........+..++...+.+++..|+.+++.++.++.++...+..-
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34456666666666665543221000 000011223444566777888888888888888888777777654
No 177
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.13 E-value=6.2e+02 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 004556 77 LVKHLQRELSRLENELRGSGPVF 99 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~ 99 (745)
.++.++.++..+..++.......
T Consensus 51 ~l~~~~~el~~~~~~l~~~~~~l 73 (158)
T PF03938_consen 51 ELQAKQKELQKLQQKLQSQKATL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455555555555555544433
No 178
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.01 E-value=3.4e+02 Score=22.96 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004556 115 IEKLEKEVDELTMQRDLA 132 (745)
Q Consensus 115 IekLekEi~eLq~qld~a 132 (745)
+++++.++.+|+.+++.+
T Consensus 33 i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 33 IEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444444
No 179
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.95 E-value=4.3e+02 Score=32.64 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 144 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q~v~ 144 (745)
...+..||+++.+.+.++..+++++.+.++.-.
T Consensus 487 Kq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 487 KQSLQQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888888888888877776665433
No 180
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.94 E-value=2.7e+02 Score=28.49 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004556 108 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 146 (745)
Q Consensus 108 L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~ 146 (745)
-++...++.++++||.-|++-+...+.+..+|.+++|-.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit 69 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGIT 69 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCc
Confidence 345566677778888888888888888888888887754
No 181
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.83 E-value=2e+02 Score=29.90 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 004556 77 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDE 124 (745)
Q Consensus 77 lIk~LqkEIa~LesEL~s~~~~~s~~el~~~L~Eke~eIekLekEi~e 124 (745)
.++.|+.++...+++++...+.....+....+.++++++..+++.+..
T Consensus 94 k~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 94 KVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766554444444444444444444444433
No 182
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.80 E-value=2.1e+02 Score=33.89 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 118 LEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 118 LekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
|..|.++|.+.++....+...|.+.|++
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3333444444444444444444444444
No 183
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=20.77 E-value=97 Score=31.20 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=31.7
Q ss_pred eehhhhhhHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhc
Q 004556 611 EQRRLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRERHMLSQHVKKRF 659 (745)
Q Consensus 611 E~RRLs~lk~~~~~g~~~~~~~~~~s~~SS~kaL~rERemL~k~m~krl 659 (745)
..||+-||++....-- .-+-.|+|-++.|+.+|||=+|.+...|
T Consensus 83 q~~rV~~Lqd~~~~hk-----sa~~aLas~L~~Lr~q~e~e~keaa~qL 126 (152)
T PF15186_consen 83 QARRVQWLQDQAEEHK-----SAAWALASELKRLREQREMERKEAAFQL 126 (152)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899998775311 1134689999999999998777665543
No 184
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.76 E-value=2.8e+02 Score=22.60 Aligned_cols=30 Identities=40% Similarity=0.535 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004556 112 DLRIEKLEKEVDELTMQRDLARTEVENLLR 141 (745)
Q Consensus 112 e~eIekLekEi~eLq~qld~aq~eie~L~q 141 (745)
...++.|+.++..|..++..++.++..|.+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556666666676666666666666654
No 185
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.69 E-value=2.8e+02 Score=26.35 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004556 106 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 147 (745)
Q Consensus 106 ~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~~~ 147 (745)
..+...-.++..|+..+.+|..++..++-+.++|++.+....
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777777787888888888888888877654
No 186
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.61 E-value=3.2e+02 Score=33.26 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004556 105 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 145 (745)
Q Consensus 105 ~~~L~Eke~eIekLekEi~eLq~qld~aq~eie~L~q~v~~ 145 (745)
..+.++.+..+..+..++..|+.++...+.+++.|.+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~ 410 (656)
T PRK06975 370 RVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQD 410 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777788888888888888887777777754
No 187
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.13 E-value=3.5e+02 Score=24.23 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 004556 76 ALVKHLQRELSRLENELRGSGP 97 (745)
Q Consensus 76 alIk~LqkEIa~LesEL~s~~~ 97 (745)
..+..++..+...++.+....+
T Consensus 28 ~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 28 TATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 4567788888888888877654
No 188
>PF12888 Lipid_bd: Lipid-binding putative hydrolase; InterPro: IPR024404 This entry represents a small family of uncharacterised proteins found in Bacteroidetes that may be involved in lipid binding.; PDB: 3H3I_A.
Probab=20.07 E-value=42 Score=32.20 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=12.7
Q ss_pred cCCCCCceEEEEeehh
Q 004556 599 KGDPKDSIYMEVEQRR 614 (745)
Q Consensus 599 kGd~~D~iYmEVE~RR 614 (745)
-|-|+|+||+.|++.+
T Consensus 76 ~G~~~DSI~f~v~fs~ 91 (112)
T PF12888_consen 76 SGTPADSIVFKVEFSD 91 (112)
T ss_dssp TS-EEEEEEEEEEETT
T ss_pred CCCccceEEEEEEecc
Confidence 3789999999999765
Done!