Query 004558
Match_columns 745
No_of_seqs 411 out of 2740
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10537 voltage-gated potassi 100.0 5.3E-30 1.1E-34 283.6 27.5 233 291-549 140-382 (393)
2 PRK09496 trkA potassium transp 100.0 8.9E-30 1.9E-34 287.6 27.8 305 383-740 1-317 (453)
3 PF06241 DUF1012: Protein of u 99.9 3.2E-26 7E-31 220.0 16.2 201 461-671 1-201 (206)
4 KOG1420 Ca2+-activated K+ chan 99.9 6E-26 1.3E-30 247.4 9.5 343 263-618 227-621 (1103)
5 COG0569 TrkA K+ transport syst 99.9 3.2E-23 6.9E-28 214.2 18.4 213 383-622 1-217 (225)
6 PRK09496 trkA potassium transp 99.9 7.3E-21 1.6E-25 215.1 21.6 212 381-621 230-444 (453)
7 KOG3193 K+ channel subunit [In 99.8 9.3E-20 2E-24 198.4 15.0 319 285-616 184-546 (1087)
8 PRK10669 putative cation:proto 99.7 9E-17 1.9E-21 187.1 22.4 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.7 2.6E-15 5.7E-20 176.0 23.0 132 381-537 399-531 (601)
10 PF02254 TrkA_N: TrkA-N domain 99.6 1.2E-15 2.5E-20 140.8 12.3 113 385-519 1-113 (116)
11 PRK03562 glutathione-regulated 99.6 1.2E-14 2.5E-19 171.1 23.1 132 381-537 399-531 (621)
12 PF07885 Ion_trans_2: Ion chan 99.1 1.6E-10 3.5E-15 100.0 8.1 72 295-366 3-78 (79)
13 KOG3713 Voltage-gated K+ chann 98.9 7E-10 1.5E-14 123.0 5.1 80 289-368 347-433 (477)
14 COG1226 Kch Kef-type K+ transp 98.8 5.6E-08 1.2E-12 96.2 14.9 143 379-545 18-161 (212)
15 PF02254 TrkA_N: TrkA-N domain 98.8 7.7E-09 1.7E-13 95.3 7.2 80 646-740 1-82 (116)
16 COG0569 TrkA K+ transport syst 98.7 4.5E-08 9.7E-13 101.6 9.2 83 644-740 1-86 (225)
17 KOG1419 Voltage-gated K+ chann 98.7 3.2E-08 7E-13 110.3 6.8 118 245-369 197-326 (654)
18 KOG1545 Voltage-gated shaker-l 98.6 4.3E-09 9.3E-14 111.9 -1.7 78 289-366 363-447 (507)
19 PLN03192 Voltage-dependent pot 98.5 4.3E-07 9.3E-12 111.0 10.1 51 317-367 254-305 (823)
20 PRK03562 glutathione-regulated 98.5 3.3E-07 7.2E-12 108.4 8.3 83 643-740 400-484 (621)
21 PRK03659 glutathione-regulated 98.4 7.1E-07 1.5E-11 105.3 7.9 82 643-739 400-483 (601)
22 PRK10537 voltage-gated potassi 98.3 8.1E-07 1.8E-11 99.4 7.6 81 643-740 240-322 (393)
23 KOG4404 Tandem pore domain K+ 98.3 2.4E-06 5.2E-11 90.6 9.9 81 288-368 161-250 (350)
24 PRK10669 putative cation:proto 98.2 2.6E-06 5.7E-11 99.8 9.1 77 643-734 417-495 (558)
25 COG0490 Putative regulatory, l 98.2 2.7E-06 5.9E-11 82.5 7.4 65 554-621 88-153 (162)
26 PF02080 TrkA_C: TrkA-C domain 98.0 4.2E-06 9.1E-11 70.4 2.5 62 555-620 3-65 (71)
27 COG3400 Uncharacterized protei 97.9 0.00011 2.5E-09 78.8 13.3 210 383-620 2-214 (471)
28 KOG4390 Voltage-gated A-type K 97.8 1.7E-06 3.7E-11 93.0 -2.2 95 270-368 311-412 (632)
29 PF01007 IRK: Inward rectifier 97.8 8.2E-05 1.8E-09 81.7 9.5 104 283-390 32-160 (336)
30 KOG3684 Ca2+-activated K+ chan 97.7 0.0024 5.1E-08 71.2 18.7 76 290-365 256-340 (489)
31 PRK06719 precorrin-2 dehydroge 97.5 0.0001 2.2E-09 72.5 5.0 76 642-739 12-89 (157)
32 KOG1418 Tandem pore domain K+ 97.5 0.00014 3E-09 80.9 5.6 62 311-372 113-175 (433)
33 KOG0498 K+-channel ERG and rel 97.4 0.00019 4.1E-09 85.2 5.7 55 314-368 295-350 (727)
34 KOG4404 Tandem pore domain K+ 97.3 0.00023 4.9E-09 75.9 4.1 125 223-367 6-135 (350)
35 KOG1418 Tandem pore domain K+ 97.2 5.7E-05 1.2E-09 84.0 -0.7 66 293-358 222-296 (433)
36 PF03493 BK_channel_a: Calcium 97.1 0.0013 2.9E-08 59.8 6.8 70 514-585 8-101 (101)
37 KOG0501 K+-channel KCNQ [Inorg 97.1 0.0017 3.7E-08 73.6 8.9 55 314-368 424-479 (971)
38 PRK06719 precorrin-2 dehydroge 97.0 0.0032 6.9E-08 61.9 9.0 83 381-490 12-94 (157)
39 COG3273 Uncharacterized conser 96.8 0.0014 3E-08 65.0 4.8 63 556-621 123-186 (204)
40 PRK06718 precorrin-2 dehydroge 96.6 0.0039 8.5E-08 63.8 6.4 77 642-737 9-87 (202)
41 KOG0499 Cyclic nucleotide-gate 96.3 0.0073 1.6E-07 69.0 6.9 96 272-367 347-457 (815)
42 KOG1420 Ca2+-activated K+ chan 96.0 0.096 2.1E-06 59.8 13.5 232 381-617 732-1067(1103)
43 TIGR01470 cysG_Nterm siroheme 96.0 0.025 5.5E-07 58.1 8.3 74 643-735 9-84 (205)
44 KOG0500 Cyclic nucleotide-gate 95.8 0.027 5.9E-07 63.5 8.1 55 314-368 184-238 (536)
45 COG1226 Kch Kef-type K+ transp 95.7 0.036 7.9E-07 54.5 8.2 84 641-739 19-104 (212)
46 PRK06718 precorrin-2 dehydroge 95.6 0.045 9.7E-07 56.1 8.5 83 382-489 10-93 (202)
47 KOG3193 K+ channel subunit [In 94.7 0.1 2.2E-06 59.2 8.3 113 438-552 762-905 (1087)
48 PRK05326 potassium/proton anti 94.6 0.034 7.5E-07 65.5 4.8 63 555-622 418-480 (562)
49 TIGR03802 Asp_Ala_antiprt aspa 94.4 0.044 9.5E-07 64.6 4.9 64 554-621 220-284 (562)
50 PF13460 NAD_binding_10: NADH( 94.1 0.23 5E-06 48.8 8.6 69 385-470 1-70 (183)
51 PF00670 AdoHcyase_NAD: S-aden 94.0 0.078 1.7E-06 52.4 4.9 72 642-737 22-93 (162)
52 TIGR01470 cysG_Nterm siroheme 93.8 0.67 1.5E-05 47.6 11.7 84 382-490 9-93 (205)
53 PF03435 Saccharop_dh: Sacchar 93.8 0.29 6.3E-06 54.8 9.7 76 385-470 1-77 (386)
54 KOG3827 Inward rectifier K+ ch 93.7 0.11 2.3E-06 57.3 5.8 117 270-390 45-188 (400)
55 COG1748 LYS9 Saccharopine dehy 93.6 0.37 8E-06 54.2 9.9 130 383-547 2-135 (389)
56 PF00520 Ion_trans: Ion transp 93.5 0.33 7.2E-06 47.5 8.5 50 312-361 144-200 (200)
57 PRK04972 putative transporter; 93.3 0.073 1.6E-06 62.7 4.1 63 555-621 305-367 (558)
58 COG1748 LYS9 Saccharopine dehy 93.2 0.23 4.9E-06 55.8 7.4 82 644-738 2-87 (389)
59 TIGR03802 Asp_Ala_antiprt aspa 92.9 0.1 2.2E-06 61.6 4.5 63 555-621 305-372 (562)
60 PF13460 NAD_binding_10: NADH( 92.8 0.33 7.2E-06 47.7 7.3 67 646-730 1-68 (183)
61 PRK03818 putative transporter; 92.7 0.12 2.5E-06 61.0 4.4 62 555-620 292-354 (552)
62 PRK12475 thiamine/molybdopteri 92.6 1.2 2.6E-05 49.3 12.2 98 381-491 23-141 (338)
63 PRK05562 precorrin-2 dehydroge 92.5 0.46 9.9E-06 49.5 8.2 74 642-734 24-99 (223)
64 PF05368 NmrA: NmrA-like famil 92.5 0.3 6.6E-06 50.2 6.9 72 646-731 1-73 (233)
65 PLN02819 lysine-ketoglutarate 92.2 0.37 7.9E-06 60.5 8.1 81 641-734 567-661 (1042)
66 CHL00194 ycf39 Ycf39; Provisio 91.8 1.1 2.4E-05 48.5 10.6 72 383-469 1-73 (317)
67 PRK03818 putative transporter; 91.8 0.17 3.8E-06 59.5 4.6 63 554-621 207-270 (552)
68 PF01488 Shikimate_DH: Shikima 91.6 0.25 5.4E-06 47.1 4.7 72 642-730 11-83 (135)
69 PF03435 Saccharop_dh: Sacchar 91.4 0.48 1E-05 53.0 7.4 74 646-730 1-75 (386)
70 cd01078 NAD_bind_H4MPT_DH NADP 91.3 0.46 1E-05 47.9 6.5 75 642-730 27-105 (194)
71 COG3263 NhaP-type Na+/H+ and K 90.9 0.32 7E-06 54.6 5.2 55 560-620 421-476 (574)
72 COG0168 TrkG Trk-type K+ trans 90.9 4 8.6E-05 47.7 14.4 74 288-361 399-482 (499)
73 COG0373 HemA Glutamyl-tRNA red 90.8 0.5 1.1E-05 53.5 6.6 69 642-730 177-246 (414)
74 cd01075 NAD_bind_Leu_Phe_Val_D 90.6 0.9 1.9E-05 46.4 7.9 101 383-517 29-134 (200)
75 PRK12475 thiamine/molybdopteri 90.6 0.92 2E-05 50.2 8.5 85 642-733 23-127 (338)
76 PRK05562 precorrin-2 dehydroge 90.4 3.6 7.8E-05 43.0 12.1 84 382-490 25-109 (223)
77 PF13241 NAD_binding_7: Putati 90.4 0.23 5E-06 45.1 3.0 63 642-730 6-68 (103)
78 PLN02819 lysine-ketoglutarate 89.9 1.8 3.8E-05 54.6 10.9 104 381-502 568-679 (1042)
79 PF01210 NAD_Gly3P_dh_N: NAD-d 89.8 0.48 1E-05 46.3 4.9 77 645-730 1-77 (157)
80 PRK01581 speE spermidine synth 89.8 1.3 2.9E-05 49.3 8.8 84 641-730 149-234 (374)
81 PF00670 AdoHcyase_NAD: S-aden 89.7 0.7 1.5E-05 45.8 5.9 66 382-470 23-88 (162)
82 PRK00536 speE spermidine synth 89.5 1.2 2.5E-05 47.7 7.9 74 641-729 71-146 (262)
83 PRK04972 putative transporter; 88.8 0.73 1.6E-05 54.4 6.3 54 564-621 228-282 (558)
84 PF05368 NmrA: NmrA-like famil 88.8 3.1 6.7E-05 42.7 10.3 71 385-470 1-74 (233)
85 CHL00194 ycf39 Ycf39; Provisio 88.7 1.2 2.5E-05 48.4 7.4 70 645-730 2-72 (317)
86 COG1648 CysG Siroheme synthase 88.6 0.99 2.2E-05 46.6 6.4 74 642-734 11-86 (210)
87 PRK06914 short chain dehydroge 88.6 1.7 3.6E-05 45.8 8.4 82 383-470 4-91 (280)
88 PRK07688 thiamine/molybdopteri 88.2 1.8 3.9E-05 48.0 8.6 84 642-733 23-127 (339)
89 PRK09186 flagellin modificatio 88.2 1.8 3.9E-05 44.7 8.1 81 382-468 4-91 (256)
90 cd05213 NAD_bind_Glutamyl_tRNA 88.1 1 2.2E-05 49.1 6.5 78 642-738 177-257 (311)
91 cd01078 NAD_bind_H4MPT_DH NADP 88.0 2.1 4.5E-05 43.2 8.2 79 382-470 28-107 (194)
92 PLN00141 Tic62-NAD(P)-related 87.8 1.8 3.8E-05 45.2 7.9 77 382-470 17-95 (251)
93 PLN03209 translocon at the inn 87.7 1.7 3.7E-05 51.3 8.3 83 642-730 79-167 (576)
94 COG0300 DltE Short-chain dehyd 87.7 1.8 4E-05 46.2 7.9 83 381-470 5-94 (265)
95 PLN02780 ketoreductase/ oxidor 87.6 5.9 0.00013 43.3 12.1 62 382-449 53-115 (320)
96 PLN02366 spermidine synthase 87.6 1.7 3.8E-05 47.4 7.8 81 642-730 91-173 (308)
97 PF01488 Shikimate_DH: Shikima 87.2 2 4.3E-05 40.9 7.1 75 381-470 11-85 (135)
98 TIGR00518 alaDH alanine dehydr 87.1 1.6 3.6E-05 48.8 7.5 73 642-730 166-238 (370)
99 PRK07688 thiamine/molybdopteri 87.1 6.8 0.00015 43.4 12.2 98 381-491 23-141 (339)
100 COG1648 CysG Siroheme synthase 87.0 3.9 8.5E-05 42.3 9.6 86 382-491 12-97 (210)
101 PRK04148 hypothetical protein; 87.0 1.3 2.8E-05 42.6 5.6 69 383-469 18-86 (134)
102 PRK10637 cysG siroheme synthas 86.9 2.2 4.7E-05 49.3 8.5 74 642-734 11-86 (457)
103 PF02558 ApbA: Ketopantoate re 86.8 1 2.2E-05 43.1 5.0 82 646-738 1-86 (151)
104 PRK08267 short chain dehydroge 86.7 1.4 3.1E-05 45.8 6.4 76 644-730 2-85 (260)
105 cd05211 NAD_bind_Glu_Leu_Phe_V 86.3 2.3 4.9E-05 44.2 7.5 107 381-515 22-143 (217)
106 PF00070 Pyr_redox: Pyridine n 86.1 1.4 3E-05 37.7 5.0 32 645-679 1-32 (80)
107 PRK08265 short chain dehydroge 85.9 2.7 5.9E-05 43.9 8.1 77 382-469 6-89 (261)
108 PRK07326 short chain dehydroge 85.9 2.9 6.2E-05 42.7 8.0 80 382-470 6-92 (237)
109 PRK08251 short chain dehydroge 85.8 2.9 6.3E-05 43.0 8.1 81 383-469 3-90 (248)
110 PLN02823 spermine synthase 85.8 3.2 6.9E-05 46.0 8.7 81 642-730 103-184 (336)
111 PF13241 NAD_binding_7: Putati 85.7 3.9 8.4E-05 37.1 7.9 79 382-491 7-85 (103)
112 PRK14106 murD UDP-N-acetylmura 85.6 1.7 3.7E-05 49.5 6.8 69 643-730 5-76 (450)
113 PRK06522 2-dehydropantoate 2-r 85.4 6.6 0.00014 42.0 10.9 72 383-470 1-76 (304)
114 PRK06194 hypothetical protein; 85.4 2.8 6E-05 44.3 7.9 80 383-470 7-93 (287)
115 PLN03209 translocon at the inn 85.4 3.1 6.6E-05 49.2 8.7 83 381-470 79-169 (576)
116 TIGR01181 dTDP_gluc_dehyt dTDP 85.2 2.2 4.7E-05 45.4 7.0 78 645-730 1-81 (317)
117 PRK08267 short chain dehydroge 85.0 3.1 6.8E-05 43.2 8.0 78 383-470 2-87 (260)
118 PLN02896 cinnamyl-alcohol dehy 84.9 3.6 7.8E-05 45.2 8.8 81 380-470 8-89 (353)
119 cd05213 NAD_bind_Glutamyl_tRNA 84.7 4.3 9.3E-05 44.3 9.1 103 381-509 177-279 (311)
120 PRK07831 short chain dehydroge 84.6 3.4 7.4E-05 43.0 8.1 82 382-469 17-106 (262)
121 COG4262 Predicted spermidine s 84.5 4.1 8.9E-05 45.2 8.6 81 641-730 288-373 (508)
122 PRK07074 short chain dehydroge 84.4 2.4 5.3E-05 43.9 6.8 76 644-730 3-85 (257)
123 PRK10538 malonic semialdehyde 84.3 3.6 7.7E-05 42.6 8.0 76 383-469 1-83 (248)
124 PRK09291 short chain dehydroge 84.2 5.3 0.00011 41.2 9.2 79 383-469 3-82 (257)
125 TIGR00933 2a38 potassium uptak 84.2 7.4 0.00016 43.9 11.0 41 310-350 345-389 (390)
126 TIGR03589 PseB UDP-N-acetylglu 84.2 3.3 7.2E-05 45.1 8.0 77 644-730 5-82 (324)
127 PRK06101 short chain dehydroge 84.0 3.1 6.7E-05 42.9 7.3 62 383-456 2-64 (240)
128 PRK12829 short chain dehydroge 84.0 4.1 8.9E-05 42.2 8.3 80 381-470 10-96 (264)
129 PRK07231 fabG 3-ketoacyl-(acyl 84.0 3.8 8.3E-05 42.0 8.0 79 383-470 6-91 (251)
130 PRK07024 short chain dehydroge 83.7 3.7 8E-05 42.7 7.8 79 382-469 2-87 (257)
131 PRK06138 short chain dehydroge 83.7 4.2 9E-05 41.8 8.1 80 382-470 5-91 (252)
132 PRK05854 short chain dehydroge 83.5 3.9 8.5E-05 44.3 8.2 82 382-469 14-102 (313)
133 cd01065 NAD_bind_Shikimate_DH 83.5 2.9 6.2E-05 40.1 6.4 72 642-730 18-89 (155)
134 PRK07063 short chain dehydroge 83.4 4.3 9.4E-05 42.1 8.2 81 383-469 8-95 (260)
135 PLN02650 dihydroflavonol-4-red 83.3 3.6 7.8E-05 45.1 7.9 82 382-470 5-87 (351)
136 PRK06949 short chain dehydroge 83.3 4.4 9.6E-05 41.8 8.2 81 381-469 8-95 (258)
137 TIGR03466 HpnA hopanoid-associ 83.2 2.5 5.3E-05 45.3 6.4 71 384-469 2-73 (328)
138 PRK06482 short chain dehydroge 83.1 5.5 0.00012 41.8 8.9 77 383-470 3-86 (276)
139 PRK07062 short chain dehydroge 83.1 4.5 9.7E-05 42.2 8.2 82 382-469 8-96 (265)
140 PF03807 F420_oxidored: NADP o 83.0 12 0.00026 32.7 9.8 80 384-485 1-81 (96)
141 PLN02214 cinnamoyl-CoA reducta 83.0 4.2 9.1E-05 44.7 8.2 79 643-730 10-89 (342)
142 TIGR03466 HpnA hopanoid-associ 82.9 2.9 6.3E-05 44.7 6.9 70 645-730 2-72 (328)
143 PRK07454 short chain dehydroge 82.9 4.7 0.0001 41.3 8.1 79 383-469 7-92 (241)
144 PLN00198 anthocyanidin reducta 82.9 5 0.00011 43.6 8.8 78 643-730 9-88 (338)
145 PLN00141 Tic62-NAD(P)-related 82.7 4.7 0.0001 42.0 8.2 74 643-730 17-93 (251)
146 PRK03612 spermidine synthase; 82.7 4.7 0.0001 47.3 8.9 82 641-730 296-381 (521)
147 cd01065 NAD_bind_Shikimate_DH 82.6 4.1 8.8E-05 39.0 7.1 73 382-470 19-91 (155)
148 PLN02427 UDP-apiose/xylose syn 82.6 3.6 7.8E-05 45.9 7.6 82 381-469 13-95 (386)
149 cd05291 HicDH_like L-2-hydroxy 82.5 3.1 6.8E-05 45.2 6.9 75 384-470 2-78 (306)
150 PLN03223 Polycystin cation cha 82.5 20 0.00044 45.9 14.2 56 312-369 1360-1426(1634)
151 TIGR03589 PseB UDP-N-acetylglu 82.4 5.6 0.00012 43.3 8.9 79 383-470 5-84 (324)
152 PRK06200 2,3-dihydroxy-2,3-dih 82.3 4.3 9.3E-05 42.3 7.7 77 382-469 6-89 (263)
153 PLN02989 cinnamyl-alcohol dehy 82.3 4 8.6E-05 44.1 7.7 82 382-470 5-87 (325)
154 TIGR02853 spore_dpaA dipicolin 82.3 2.8 6.1E-05 45.3 6.4 34 643-679 151-184 (287)
155 TIGR03649 ergot_EASG ergot alk 82.3 3.7 8E-05 43.5 7.3 69 385-470 2-77 (285)
156 PRK06940 short chain dehydroge 82.2 4.4 9.5E-05 42.9 7.8 80 382-470 2-86 (275)
157 PF01210 NAD_Gly3P_dh_N: NAD-d 82.1 1.8 3.9E-05 42.3 4.4 77 384-470 1-79 (157)
158 PRK07067 sorbitol dehydrogenas 82.1 4.9 0.00011 41.7 8.0 77 382-469 6-89 (257)
159 PRK05565 fabG 3-ketoacyl-(acyl 82.0 4.9 0.00011 41.0 7.9 80 383-470 6-93 (247)
160 PRK08309 short chain dehydroge 82.0 5.2 0.00011 40.1 7.7 65 383-456 1-65 (177)
161 PRK05993 short chain dehydroge 81.9 3.8 8.2E-05 43.3 7.1 73 383-469 5-85 (277)
162 PRK08340 glucose-1-dehydrogena 81.8 4.6 0.0001 42.0 7.7 78 383-469 1-85 (259)
163 PRK11908 NAD-dependent epimera 81.7 3.9 8.6E-05 44.7 7.4 73 383-468 2-76 (347)
164 PF00106 adh_short: short chai 81.6 5.1 0.00011 38.4 7.4 81 383-470 1-90 (167)
165 PRK13940 glutamyl-tRNA reducta 81.6 3.1 6.8E-05 47.4 6.7 69 643-730 181-250 (414)
166 PRK07523 gluconate 5-dehydroge 81.6 5.2 0.00011 41.4 7.9 81 382-470 10-97 (255)
167 PLN02583 cinnamoyl-CoA reducta 81.5 5.7 0.00012 42.7 8.4 78 643-729 6-85 (297)
168 PRK06172 short chain dehydroge 81.4 5.6 0.00012 41.1 8.1 80 382-469 7-93 (253)
169 PRK06182 short chain dehydroge 81.3 4.3 9.3E-05 42.6 7.3 75 382-470 3-84 (273)
170 PLN02427 UDP-apiose/xylose syn 81.3 6.7 0.00014 43.7 9.2 82 641-730 12-94 (386)
171 PRK08017 oxidoreductase; Provi 81.1 4.3 9.4E-05 41.8 7.1 59 383-455 3-62 (256)
172 TIGR01035 hemA glutamyl-tRNA r 80.9 2.6 5.7E-05 48.0 5.8 69 642-730 179-248 (417)
173 PRK06500 short chain dehydroge 80.9 6.3 0.00014 40.4 8.2 77 382-469 6-89 (249)
174 PRK05476 S-adenosyl-L-homocyst 80.9 4.8 0.0001 46.0 7.8 72 642-737 211-282 (425)
175 PRK07666 fabG 3-ketoacyl-(acyl 80.8 5.7 0.00012 40.6 7.8 80 382-469 7-93 (239)
176 PRK00045 hemA glutamyl-tRNA re 80.8 3.1 6.7E-05 47.4 6.4 69 642-730 181-250 (423)
177 PLN00203 glutamyl-tRNA reducta 80.8 3.8 8.1E-05 48.1 7.1 71 643-730 266-337 (519)
178 PLN02662 cinnamyl-alcohol dehy 80.6 4.1 9E-05 43.7 7.0 81 383-470 5-86 (322)
179 PRK08306 dipicolinate synthase 80.6 3.7 8.1E-05 44.6 6.6 42 642-688 151-192 (296)
180 PRK12939 short chain dehydroge 80.6 6.1 0.00013 40.4 8.0 81 382-470 7-94 (250)
181 TIGR01472 gmd GDP-mannose 4,6- 80.5 4.3 9.3E-05 44.3 7.2 80 644-730 1-86 (343)
182 PLN02214 cinnamoyl-CoA reducta 80.4 13 0.00029 40.7 11.1 80 382-470 10-91 (342)
183 PRK08643 acetoin reductase; Va 80.4 6.2 0.00013 40.8 8.0 79 383-469 3-88 (256)
184 PLN02896 cinnamyl-alcohol dehy 80.2 8.3 0.00018 42.3 9.3 77 642-730 9-87 (353)
185 PF00899 ThiF: ThiF family; I 80.1 4.5 9.7E-05 38.3 6.3 88 643-735 2-105 (135)
186 PLN02928 oxidoreductase family 80.1 2.7 5.9E-05 46.7 5.5 33 643-678 159-191 (347)
187 TIGR00936 ahcY adenosylhomocys 80.1 3.1 6.7E-05 47.2 6.0 73 642-738 194-266 (406)
188 KOG1014 17 beta-hydroxysteroid 80.1 19 0.00041 39.3 11.6 44 382-431 49-93 (312)
189 PRK06924 short chain dehydroge 80.1 5.3 0.00011 41.1 7.4 63 383-456 2-66 (251)
190 PRK06197 short chain dehydroge 80.1 5.4 0.00012 42.8 7.7 82 382-469 16-104 (306)
191 PRK07097 gluconate 5-dehydroge 80.0 6.6 0.00014 41.0 8.1 81 382-470 10-97 (265)
192 PF01564 Spermine_synth: Sperm 79.8 2.9 6.3E-05 44.2 5.3 91 642-739 76-168 (246)
193 TIGR00518 alaDH alanine dehydr 79.8 5.1 0.00011 44.9 7.5 72 382-468 167-238 (370)
194 PRK07102 short chain dehydroge 79.7 6.2 0.00013 40.5 7.7 80 383-469 2-85 (243)
195 PRK09242 tropinone reductase; 79.7 6.7 0.00014 40.7 8.0 81 383-469 10-97 (257)
196 PRK05875 short chain dehydroge 79.7 7.2 0.00016 40.9 8.3 82 382-469 7-95 (276)
197 PRK12384 sorbitol-6-phosphate 79.7 6.7 0.00015 40.6 8.0 81 383-469 3-90 (259)
198 PRK05884 short chain dehydroge 79.6 4.5 9.8E-05 41.4 6.6 72 384-468 2-77 (223)
199 PRK15181 Vi polysaccharide bio 79.5 5.9 0.00013 43.5 7.9 82 642-730 14-98 (348)
200 PF01408 GFO_IDH_MocA: Oxidore 79.5 19 0.00041 32.7 10.1 71 384-470 2-72 (120)
201 cd01483 E1_enzyme_family Super 79.5 7.5 0.00016 37.0 7.6 85 645-734 1-101 (143)
202 PRK06124 gluconate 5-dehydroge 79.4 7.1 0.00015 40.4 8.1 80 382-469 11-97 (256)
203 TIGR00934 2a38euk potassium up 79.4 9.1 0.0002 46.7 9.7 61 291-352 587-661 (800)
204 TIGR02356 adenyl_thiF thiazole 79.3 7.1 0.00015 39.9 7.9 85 642-733 20-122 (202)
205 PRK08339 short chain dehydroge 79.3 7 0.00015 41.1 8.1 79 383-468 9-93 (263)
206 PRK01438 murD UDP-N-acetylmura 79.3 4.2 9.2E-05 46.9 6.9 35 642-679 15-49 (480)
207 PRK12829 short chain dehydroge 79.2 5.6 0.00012 41.2 7.2 78 642-730 10-94 (264)
208 PRK06196 oxidoreductase; Provi 79.2 6.2 0.00013 42.7 7.8 75 383-469 27-108 (315)
209 PRK06194 hypothetical protein; 79.2 3.7 8E-05 43.3 6.0 76 644-730 7-91 (287)
210 PLN02662 cinnamyl-alcohol dehy 79.2 5.6 0.00012 42.7 7.5 78 644-730 5-84 (322)
211 PRK05866 short chain dehydroge 79.0 6.6 0.00014 42.2 7.9 81 382-470 40-127 (293)
212 PRK07074 short chain dehydroge 79.0 8.2 0.00018 39.9 8.4 78 383-470 3-87 (257)
213 PTZ00075 Adenosylhomocysteinas 79.0 3.3 7.1E-05 47.9 5.8 35 642-679 253-287 (476)
214 PRK12429 3-hydroxybutyrate deh 79.0 7.4 0.00016 40.0 8.0 80 383-470 5-91 (258)
215 TIGR02964 xanthine_xdhC xanthi 78.9 7.3 0.00016 41.2 8.0 81 642-740 99-183 (246)
216 PRK07890 short chain dehydroge 78.8 7.3 0.00016 40.2 7.9 80 382-469 5-91 (258)
217 PRK12826 3-ketoacyl-(acyl-carr 78.8 7.9 0.00017 39.6 8.1 81 382-470 6-93 (251)
218 PRK07424 bifunctional sterol d 78.5 18 0.00038 41.3 11.4 76 382-469 178-254 (406)
219 PRK13394 3-hydroxybutyrate deh 78.4 6.9 0.00015 40.4 7.6 80 383-470 8-94 (262)
220 PRK05867 short chain dehydroge 78.3 8.3 0.00018 39.9 8.2 79 383-469 10-95 (253)
221 PRK07576 short chain dehydroge 78.2 7.1 0.00015 40.9 7.7 79 382-468 9-94 (264)
222 PRK07231 fabG 3-ketoacyl-(acyl 78.1 7.3 0.00016 39.9 7.7 77 643-730 5-89 (251)
223 PRK08213 gluconate 5-dehydroge 78.1 8.2 0.00018 40.1 8.1 81 382-470 12-99 (259)
224 PRK06522 2-dehydropantoate 2-r 78.1 8.2 0.00018 41.3 8.3 42 645-691 2-43 (304)
225 PRK05650 short chain dehydroge 78.1 7.8 0.00017 40.6 8.0 79 384-470 2-87 (270)
226 PLN02657 3,8-divinyl protochlo 78.1 4 8.7E-05 45.9 6.1 80 382-469 60-145 (390)
227 PF00060 Lig_chan: Ligand-gate 77.9 2.1 4.6E-05 40.5 3.3 55 314-368 45-99 (148)
228 PRK10637 cysG siroheme synthas 77.8 19 0.0004 41.6 11.5 85 381-490 11-96 (457)
229 PRK06180 short chain dehydroge 77.8 7.3 0.00016 41.1 7.7 77 383-470 5-88 (277)
230 PF00899 ThiF: ThiF family; I 77.7 24 0.00053 33.2 10.5 35 382-421 2-36 (135)
231 PRK07825 short chain dehydroge 77.6 6.9 0.00015 41.0 7.4 75 383-469 6-87 (273)
232 PRK06181 short chain dehydroge 77.6 7.8 0.00017 40.2 7.8 79 383-469 2-87 (263)
233 PLN02989 cinnamyl-alcohol dehy 77.6 9.9 0.00021 41.0 8.8 79 643-730 5-85 (325)
234 PLN02650 dihydroflavonol-4-red 77.6 7.9 0.00017 42.4 8.1 78 643-730 5-85 (351)
235 PRK08219 short chain dehydroge 77.5 7.7 0.00017 39.0 7.5 75 383-470 4-81 (227)
236 TIGR03325 BphB_TodD cis-2,3-di 77.5 8.1 0.00018 40.3 7.9 76 383-469 6-88 (262)
237 PRK05653 fabG 3-ketoacyl-(acyl 77.4 8.8 0.00019 38.9 8.0 80 383-470 6-92 (246)
238 PF00056 Ldh_1_N: lactate/mala 77.3 6 0.00013 38.1 6.2 76 383-470 1-79 (141)
239 PRK07774 short chain dehydroge 77.2 9.1 0.0002 39.3 8.0 80 382-469 6-92 (250)
240 PRK05717 oxidoreductase; Valid 77.1 10 0.00022 39.3 8.4 77 382-469 10-93 (255)
241 PRK07109 short chain dehydroge 77.1 8.4 0.00018 42.3 8.2 80 382-469 8-94 (334)
242 COG0771 MurD UDP-N-acetylmuram 77.1 4.9 0.00011 46.2 6.4 71 643-730 7-77 (448)
243 PRK00811 spermidine synthase; 77.0 7 0.00015 42.1 7.3 81 642-730 76-158 (283)
244 PRK12828 short chain dehydroge 76.8 7.8 0.00017 39.2 7.4 77 383-469 8-91 (239)
245 TIGR01832 kduD 2-deoxy-D-gluco 76.8 12 0.00025 38.5 8.7 77 643-730 5-88 (248)
246 cd01076 NAD_bind_1_Glu_DH NAD( 76.8 5.8 0.00012 41.5 6.4 109 381-516 30-153 (227)
247 TIGR01500 sepiapter_red sepiap 76.7 8.9 0.00019 39.9 7.9 71 384-456 2-73 (256)
248 PF01073 3Beta_HSD: 3-beta hyd 76.7 4.3 9.4E-05 43.6 5.6 68 650-730 5-74 (280)
249 KOG1201 Hydroxysteroid 17-beta 76.5 25 0.00054 38.3 11.1 66 381-455 37-103 (300)
250 TIGR01181 dTDP_gluc_dehyt dTDP 76.5 6 0.00013 41.9 6.7 78 384-470 1-83 (317)
251 PRK06139 short chain dehydroge 76.4 8.4 0.00018 42.3 7.9 80 382-469 7-93 (330)
252 PRK06179 short chain dehydroge 76.4 4.6 9.9E-05 42.2 5.6 73 382-470 4-83 (270)
253 PRK07326 short chain dehydroge 76.1 6.5 0.00014 40.0 6.6 77 643-730 6-90 (237)
254 PRK09135 pteridine reductase; 76.1 12 0.00026 38.2 8.5 81 382-469 6-94 (249)
255 PRK09072 short chain dehydroge 76.0 9.8 0.00021 39.6 8.0 80 382-470 5-90 (263)
256 PRK08264 short chain dehydroge 76.0 8.3 0.00018 39.3 7.3 74 382-470 6-83 (238)
257 PF13478 XdhC_C: XdhC Rossmann 75.9 6.1 0.00013 38.0 5.8 63 646-730 1-63 (136)
258 PRK13302 putative L-aspartate 75.7 5.8 0.00013 42.5 6.3 70 643-730 6-75 (271)
259 PRK07478 short chain dehydroge 75.6 11 0.00023 39.1 8.1 79 383-469 7-92 (254)
260 PLN02986 cinnamyl-alcohol dehy 75.6 10 0.00023 40.8 8.3 79 643-730 5-85 (322)
261 PF02386 TrkH: Cation transpor 75.6 8.1 0.00018 42.9 7.6 68 289-356 269-345 (354)
262 PRK12936 3-ketoacyl-(acyl-carr 75.5 16 0.00035 37.2 9.3 78 382-470 6-90 (245)
263 TIGR02356 adenyl_thiF thiazole 75.4 31 0.00066 35.2 11.2 35 381-420 20-54 (202)
264 PRK07024 short chain dehydroge 75.2 11 0.00024 39.2 8.1 76 644-730 3-86 (257)
265 PLN02657 3,8-divinyl protochlo 75.2 7.2 0.00016 43.9 7.1 78 642-730 59-144 (390)
266 PRK07814 short chain dehydroge 75.1 11 0.00024 39.3 8.2 80 382-469 10-96 (263)
267 PF07991 IlvN: Acetohydroxy ac 75.1 3.2 6.9E-05 41.2 3.7 44 643-689 4-47 (165)
268 PRK08217 fabG 3-ketoacyl-(acyl 75.1 11 0.00023 38.6 7.9 80 382-469 5-91 (253)
269 PRK05876 short chain dehydroge 75.0 11 0.00024 39.9 8.2 79 383-469 7-92 (275)
270 PRK07060 short chain dehydroge 74.9 8.1 0.00017 39.5 6.9 76 382-470 9-87 (245)
271 PRK12826 3-ketoacyl-(acyl-carr 74.8 11 0.00023 38.6 7.8 77 643-730 6-91 (251)
272 TIGR02415 23BDH acetoin reduct 74.8 11 0.00024 38.7 8.0 78 384-469 2-86 (254)
273 PRK07806 short chain dehydroge 74.6 11 0.00025 38.6 8.0 78 643-730 6-92 (248)
274 PRK12548 shikimate 5-dehydroge 74.6 12 0.00026 40.4 8.4 80 643-730 126-207 (289)
275 COG1086 Predicted nucleoside-d 74.6 22 0.00047 41.9 10.7 119 382-506 250-378 (588)
276 cd05290 LDH_3 A subgroup of L- 74.6 24 0.00051 38.7 10.7 75 384-470 1-78 (307)
277 PRK08085 gluconate 5-dehydroge 74.5 12 0.00026 38.7 8.1 80 382-469 9-95 (254)
278 PRK11749 dihydropyrimidine deh 74.3 4.5 9.8E-05 46.4 5.3 35 641-678 138-172 (457)
279 PLN02253 xanthoxin dehydrogena 74.3 12 0.00025 39.4 8.1 79 382-469 18-103 (280)
280 PRK15181 Vi polysaccharide bio 74.3 9 0.0002 42.1 7.5 82 382-470 15-100 (348)
281 PRK00258 aroE shikimate 5-dehy 74.2 9.3 0.0002 41.0 7.3 70 642-730 122-193 (278)
282 PLN02986 cinnamyl-alcohol dehy 74.1 11 0.00024 40.7 8.0 78 383-470 6-87 (322)
283 PRK08594 enoyl-(acyl carrier p 74.0 10 0.00022 39.8 7.5 78 643-729 7-94 (257)
284 KOG1053 Glutamate-gated NMDA-t 74.0 15 0.00033 44.9 9.4 57 312-368 608-665 (1258)
285 PRK07453 protochlorophyllide o 73.9 13 0.00028 40.3 8.5 80 382-469 6-92 (322)
286 COG1893 ApbA Ketopantoate redu 73.9 8.7 0.00019 42.0 7.1 80 645-738 2-86 (307)
287 PRK06019 phosphoribosylaminoim 73.7 7.9 0.00017 43.2 7.0 65 644-726 3-67 (372)
288 PRK10750 potassium transporter 73.6 97 0.0021 36.2 15.9 70 289-359 398-475 (483)
289 KOG4440 NMDA selective glutama 73.5 5.1 0.00011 46.9 5.2 54 312-365 612-666 (993)
290 PRK07904 short chain dehydroge 73.5 11 0.00024 39.3 7.6 81 382-468 8-95 (253)
291 PF00106 adh_short: short chai 73.3 8.3 0.00018 36.9 6.2 79 644-730 1-88 (167)
292 PRK00094 gpsA NAD(P)H-dependen 73.3 6.7 0.00015 42.4 6.1 41 645-690 3-43 (325)
293 PRK06057 short chain dehydroge 73.2 9 0.0002 39.7 6.9 75 382-469 7-88 (255)
294 TIGR03206 benzo_BadH 2-hydroxy 73.1 14 0.00031 37.7 8.3 80 382-469 3-89 (250)
295 PF02558 ApbA: Ketopantoate re 73.1 16 0.00035 34.8 8.1 73 385-469 1-76 (151)
296 PF01408 GFO_IDH_MocA: Oxidore 73.1 15 0.00032 33.4 7.5 69 645-730 2-70 (120)
297 PLN02695 GDP-D-mannose-3',5'-e 73.1 12 0.00027 41.6 8.3 73 642-730 20-93 (370)
298 PLN02494 adenosylhomocysteinas 73.1 5.6 0.00012 46.0 5.5 35 642-679 253-287 (477)
299 PRK08589 short chain dehydroge 72.9 13 0.00028 39.1 8.1 79 382-469 6-91 (272)
300 PRK04457 spermidine synthase; 72.7 17 0.00037 38.7 8.9 78 641-728 65-142 (262)
301 PLN02583 cinnamoyl-CoA reducta 72.7 16 0.00034 39.2 8.7 78 382-468 6-86 (297)
302 PRK08219 short chain dehydroge 72.6 13 0.00027 37.4 7.6 73 644-730 4-79 (227)
303 PF10087 DUF2325: Uncharacteri 72.6 11 0.00023 33.8 6.3 28 645-675 1-29 (97)
304 PRK05693 short chain dehydroge 72.6 11 0.00023 39.6 7.3 74 383-470 2-82 (274)
305 PRK07417 arogenate dehydrogena 72.6 7.2 0.00016 41.7 6.1 65 384-469 2-66 (279)
306 PRK11908 NAD-dependent epimera 72.3 10 0.00022 41.5 7.3 72 644-729 2-75 (347)
307 COG0373 HemA Glutamyl-tRNA red 72.2 9.8 0.00021 43.3 7.1 71 382-470 178-248 (414)
308 PRK06953 short chain dehydroge 72.2 20 0.00042 36.3 8.9 72 384-469 3-79 (222)
309 TIGR01318 gltD_gamma_fam gluta 72.0 6.1 0.00013 45.6 5.7 35 642-679 140-174 (467)
310 PRK06914 short chain dehydroge 72.0 11 0.00024 39.6 7.2 79 644-730 4-89 (280)
311 PRK12825 fabG 3-ketoacyl-(acyl 72.0 11 0.00024 38.2 7.1 80 643-730 6-92 (249)
312 PRK08277 D-mannonate oxidoredu 72.0 13 0.00028 39.0 7.8 80 382-469 10-96 (278)
313 TIGR00933 2a38 potassium uptak 71.9 35 0.00076 38.5 11.6 37 298-334 113-149 (390)
314 COG0499 SAM1 S-adenosylhomocys 71.8 10 0.00022 42.3 6.8 65 382-470 209-274 (420)
315 PRK06079 enoyl-(acyl carrier p 71.8 13 0.00028 38.7 7.7 62 383-455 8-72 (252)
316 PF03807 F420_oxidored: NADP o 71.7 8.9 0.00019 33.6 5.5 43 645-689 1-44 (96)
317 cd01487 E1_ThiF_like E1_ThiF_l 71.7 14 0.00031 36.8 7.6 82 645-733 1-99 (174)
318 COG2910 Putative NADH-flavin r 71.7 9.4 0.0002 38.8 6.1 68 645-730 2-70 (211)
319 PRK05866 short chain dehydroge 71.6 8.9 0.00019 41.2 6.5 79 643-730 40-125 (293)
320 PRK07677 short chain dehydroge 71.6 15 0.00033 37.9 8.1 79 383-469 2-87 (252)
321 PLN02260 probable rhamnose bio 71.6 15 0.00032 44.4 9.0 81 643-730 6-88 (668)
322 PRK08263 short chain dehydroge 71.6 13 0.00028 39.1 7.7 77 383-470 4-87 (275)
323 cd05291 HicDH_like L-2-hydroxy 71.6 3.3 7.2E-05 45.0 3.2 42 644-688 1-42 (306)
324 PF02826 2-Hacid_dh_C: D-isome 71.5 6.5 0.00014 39.2 5.0 37 641-680 34-70 (178)
325 PRK06483 dihydromonapterin red 71.5 11 0.00023 38.6 6.8 74 382-468 2-82 (236)
326 TIGR01963 PHB_DH 3-hydroxybuty 71.4 14 0.00029 38.0 7.6 78 384-469 3-87 (255)
327 PRK07035 short chain dehydroge 71.4 16 0.00034 37.6 8.2 66 382-455 8-74 (252)
328 PRK07454 short chain dehydroge 71.4 8.6 0.00019 39.3 6.1 79 643-730 6-91 (241)
329 PF00070 Pyr_redox: Pyridine n 71.3 4.6 0.0001 34.5 3.4 32 384-421 1-32 (80)
330 TIGR02853 spore_dpaA dipicolin 71.3 37 0.0008 36.7 11.1 123 382-536 151-281 (287)
331 PF10727 Rossmann-like: Rossma 71.2 8.8 0.00019 36.5 5.6 67 643-730 10-76 (127)
332 PRK06138 short chain dehydroge 71.2 16 0.00034 37.5 8.0 78 643-730 5-89 (252)
333 PRK05872 short chain dehydroge 71.1 15 0.00032 39.3 8.1 79 382-469 9-94 (296)
334 PRK09260 3-hydroxybutyryl-CoA 71.1 2.6 5.7E-05 45.2 2.3 92 643-740 1-100 (288)
335 TIGR01316 gltA glutamate synth 70.9 6.4 0.00014 45.2 5.5 34 642-678 132-165 (449)
336 PRK05599 hypothetical protein; 70.9 14 0.00029 38.4 7.5 65 384-456 2-67 (246)
337 PRK08644 thiamine biosynthesis 70.9 12 0.00026 38.7 6.9 85 642-733 27-128 (212)
338 PRK06172 short chain dehydroge 70.8 8.6 0.00019 39.7 6.0 79 643-730 7-92 (253)
339 PRK08125 bifunctional UDP-gluc 70.8 8.3 0.00018 46.5 6.7 78 380-469 313-391 (660)
340 PRK10675 UDP-galactose-4-epime 70.7 15 0.00033 39.7 8.1 76 645-730 2-81 (338)
341 PRK07060 short chain dehydroge 70.5 13 0.00029 37.9 7.3 74 643-730 9-85 (245)
342 PRK06101 short chain dehydroge 70.5 13 0.00029 38.1 7.3 61 644-717 2-63 (240)
343 PRK07775 short chain dehydroge 70.4 16 0.00034 38.5 8.0 81 382-470 10-97 (274)
344 PRK07890 short chain dehydroge 70.3 15 0.00032 37.9 7.6 77 643-730 5-90 (258)
345 PF07991 IlvN: Acetohydroxy ac 70.2 4.5 9.8E-05 40.2 3.5 65 382-469 4-69 (165)
346 TIGR03649 ergot_EASG ergot alk 70.0 10 0.00022 40.1 6.5 68 645-730 1-75 (285)
347 PRK12921 2-dehydropantoate 2-r 69.6 39 0.00085 36.1 11.0 38 383-427 1-38 (305)
348 PRK15116 sulfur acceptor prote 69.6 24 0.00051 38.0 9.0 86 642-733 29-132 (268)
349 COG0287 TyrA Prephenate dehydr 69.5 13 0.00029 40.1 7.2 68 643-730 3-72 (279)
350 COG1087 GalE UDP-glucose 4-epi 69.5 10 0.00023 41.3 6.3 72 645-730 2-75 (329)
351 PRK00536 speE spermidine synth 69.5 18 0.00039 38.7 8.1 73 381-468 72-147 (262)
352 cd01485 E1-1_like Ubiquitin ac 69.5 11 0.00025 38.3 6.4 86 643-733 19-124 (198)
353 PRK12548 shikimate 5-dehydroge 69.5 18 0.00038 39.1 8.2 81 382-470 126-209 (289)
354 PF03446 NAD_binding_2: NAD bi 69.4 38 0.00082 33.1 9.9 93 383-506 2-97 (163)
355 PRK10675 UDP-galactose-4-epime 69.4 13 0.00028 40.3 7.2 81 383-470 1-83 (338)
356 PRK07523 gluconate 5-dehydroge 69.4 12 0.00025 38.8 6.7 77 643-730 10-95 (255)
357 cd00401 AdoHcyase S-adenosyl-L 69.3 10 0.00022 43.2 6.6 73 642-738 201-273 (413)
358 cd01485 E1-1_like Ubiquitin ac 69.3 25 0.00055 35.8 8.9 36 381-421 18-53 (198)
359 PRK06924 short chain dehydroge 69.2 16 0.00035 37.5 7.7 63 644-717 2-65 (251)
360 PRK06182 short chain dehydroge 69.2 13 0.00029 38.9 7.1 72 644-730 4-82 (273)
361 cd01483 E1_enzyme_family Super 69.0 39 0.00085 32.1 9.7 33 384-421 1-33 (143)
362 PRK10217 dTDP-glucose 4,6-dehy 68.9 12 0.00025 41.0 6.8 77 644-730 2-82 (355)
363 PRK08063 enoyl-(acyl carrier p 68.8 19 0.00042 36.9 8.1 80 383-470 5-92 (250)
364 TIGR00872 gnd_rel 6-phosphoglu 68.7 46 0.00099 36.0 11.2 68 384-470 2-69 (298)
365 PRK05653 fabG 3-ketoacyl-(acyl 68.7 9 0.0002 38.8 5.6 76 644-730 6-90 (246)
366 cd00757 ThiF_MoeB_HesA_family 68.6 16 0.00034 38.0 7.4 80 642-732 20-121 (228)
367 PRK08265 short chain dehydroge 68.6 16 0.00035 38.1 7.5 76 643-730 6-88 (261)
368 PRK07832 short chain dehydroge 68.6 17 0.00036 38.2 7.7 79 384-469 2-87 (272)
369 PRK12320 hypothetical protein; 68.4 23 0.00049 43.2 9.6 69 383-470 1-70 (699)
370 PRK06125 short chain dehydroge 68.3 18 0.0004 37.5 7.9 81 382-469 7-90 (259)
371 PRK07831 short chain dehydroge 68.3 20 0.00043 37.3 8.1 81 643-730 17-105 (262)
372 PF02737 3HCDH_N: 3-hydroxyacy 68.2 9.7 0.00021 38.2 5.5 41 384-430 1-41 (180)
373 PLN02686 cinnamoyl-CoA reducta 68.2 15 0.00032 40.9 7.6 80 381-468 52-136 (367)
374 PRK08594 enoyl-(acyl carrier p 68.2 18 0.00038 37.9 7.8 63 383-455 8-76 (257)
375 PRK05476 S-adenosyl-L-homocyst 68.1 18 0.0004 41.4 8.3 38 382-425 212-249 (425)
376 PRK08762 molybdopterin biosynt 68.1 13 0.00029 41.6 7.2 85 642-733 134-236 (376)
377 PRK08177 short chain dehydroge 68.1 14 0.00031 37.5 6.8 74 383-469 2-80 (225)
378 PRK08862 short chain dehydroge 68.0 20 0.00043 37.0 7.9 65 383-455 6-71 (227)
379 PRK08217 fabG 3-ketoacyl-(acyl 67.9 24 0.00052 36.0 8.6 79 643-730 5-90 (253)
380 PRK06482 short chain dehydroge 67.8 21 0.00045 37.4 8.2 75 644-730 3-84 (276)
381 KOG1208 Dehydrogenases with di 67.7 20 0.00042 39.5 8.2 70 381-456 33-104 (314)
382 KOG1370 S-adenosylhomocysteine 67.7 22 0.00047 38.8 8.1 90 385-508 217-306 (434)
383 PRK12828 short chain dehydroge 67.6 13 0.00029 37.5 6.5 77 643-730 7-90 (239)
384 PRK07201 short chain dehydroge 67.6 20 0.00043 42.8 9.0 77 645-730 2-85 (657)
385 PLN00198 anthocyanidin reducta 67.5 19 0.00041 39.2 8.1 79 382-470 9-90 (338)
386 TIGR01832 kduD 2-deoxy-D-gluco 67.5 20 0.00043 36.7 7.9 77 383-470 6-90 (248)
387 PRK12549 shikimate 5-dehydroge 67.4 7.2 0.00016 42.1 4.7 43 642-689 126-169 (284)
388 TIGR02622 CDP_4_6_dhtase CDP-g 67.4 15 0.00032 40.3 7.3 79 383-470 5-85 (349)
389 PRK06113 7-alpha-hydroxysteroi 67.3 21 0.00046 36.9 8.1 80 382-469 11-97 (255)
390 PRK08017 oxidoreductase; Provi 67.1 14 0.0003 38.1 6.6 59 644-717 3-62 (256)
391 PRK05565 fabG 3-ketoacyl-(acyl 67.0 12 0.00027 38.0 6.2 78 644-730 6-91 (247)
392 PRK07666 fabG 3-ketoacyl-(acyl 67.0 13 0.00028 38.0 6.3 79 643-730 7-92 (239)
393 PRK13394 3-hydroxybutyrate deh 66.8 20 0.00044 36.9 7.8 79 643-730 7-92 (262)
394 TIGR02354 thiF_fam2 thiamine b 66.8 24 0.00052 36.1 8.1 86 642-732 20-120 (200)
395 PLN02653 GDP-mannose 4,6-dehyd 66.8 14 0.0003 40.2 6.9 80 643-730 6-91 (340)
396 PLN02494 adenosylhomocysteinas 66.7 18 0.00039 41.9 7.8 38 382-425 254-291 (477)
397 PRK14618 NAD(P)H-dependent gly 66.7 11 0.00023 41.3 6.0 40 645-689 6-45 (328)
398 PLN02366 spermidine synthase 66.6 53 0.0011 36.0 11.2 82 381-470 91-175 (308)
399 COG0169 AroE Shikimate 5-dehyd 66.6 12 0.00025 40.7 6.0 43 642-689 125-168 (283)
400 PRK09242 tropinone reductase; 66.6 21 0.00045 37.0 7.8 81 643-730 9-96 (257)
401 PRK06198 short chain dehydroge 66.4 21 0.00045 36.9 7.8 80 382-469 6-93 (260)
402 PRK07069 short chain dehydroge 66.4 21 0.00046 36.5 7.8 79 385-469 2-88 (251)
403 PRK06179 short chain dehydroge 66.4 9.5 0.00021 39.8 5.3 70 644-730 5-81 (270)
404 PRK09135 pteridine reductase; 66.4 18 0.00039 36.8 7.2 80 644-730 7-93 (249)
405 PRK08264 short chain dehydroge 66.4 22 0.00049 36.1 8.0 72 643-730 6-81 (238)
406 PRK08628 short chain dehydroge 66.3 19 0.00042 37.1 7.6 79 382-469 7-92 (258)
407 PRK06197 short chain dehydroge 66.2 20 0.00043 38.4 7.8 82 642-730 15-103 (306)
408 PRK05786 fabG 3-ketoacyl-(acyl 66.2 22 0.00048 36.1 7.8 78 383-469 6-90 (238)
409 PRK12810 gltD glutamate syntha 66.1 8.5 0.00018 44.4 5.3 34 642-678 142-175 (471)
410 PRK15204 undecaprenyl-phosphat 66.0 1.2E+02 0.0026 35.3 14.6 39 382-422 146-184 (476)
411 COG2985 Predicted permease [Ge 66.0 5.1 0.00011 46.0 3.2 57 561-621 211-268 (544)
412 PRK05993 short chain dehydroge 65.9 17 0.00037 38.3 7.2 72 644-730 5-84 (277)
413 PF03446 NAD_binding_2: NAD bi 65.9 23 0.0005 34.6 7.6 42 644-690 2-43 (163)
414 PRK06567 putative bifunctional 65.9 22 0.00048 44.8 8.9 35 641-678 381-415 (1028)
415 PRK09291 short chain dehydroge 65.8 20 0.00043 36.9 7.5 78 644-730 3-81 (257)
416 PRK09186 flagellin modificatio 65.8 16 0.00034 37.7 6.7 81 643-730 4-91 (256)
417 PRK14106 murD UDP-N-acetylmura 65.8 14 0.0003 42.1 6.9 73 382-470 5-78 (450)
418 PF10727 Rossmann-like: Rossma 65.7 23 0.00049 33.7 7.1 108 381-516 9-120 (127)
419 PRK06196 oxidoreductase; Provi 65.7 21 0.00045 38.6 7.9 75 643-730 26-107 (315)
420 PRK05884 short chain dehydroge 65.6 16 0.00034 37.4 6.6 71 645-729 2-76 (223)
421 PRK12771 putative glutamate sy 65.6 21 0.00046 42.1 8.6 35 641-678 135-169 (564)
422 PRK08416 7-alpha-hydroxysteroi 65.6 25 0.00054 36.6 8.2 67 383-456 9-77 (260)
423 PRK05557 fabG 3-ketoacyl-(acyl 65.6 25 0.00054 35.6 8.1 81 642-730 4-91 (248)
424 PF01370 Epimerase: NAD depend 65.5 16 0.00035 36.8 6.7 70 646-730 1-73 (236)
425 TIGR01289 LPOR light-dependent 65.5 25 0.00053 38.1 8.4 81 382-469 3-90 (314)
426 PRK12749 quinate/shikimate deh 65.4 17 0.00037 39.4 7.1 77 643-730 124-204 (288)
427 PRK07251 pyridine nucleotide-d 65.4 12 0.00026 42.6 6.2 34 642-678 156-189 (438)
428 PRK06484 short chain dehydroge 65.4 18 0.0004 41.8 7.9 64 382-456 269-333 (520)
429 TIGR00417 speE spermidine synt 65.3 30 0.00064 36.9 8.9 80 642-730 72-153 (270)
430 COG0300 DltE Short-chain dehyd 65.3 16 0.00035 39.1 6.7 65 642-717 5-73 (265)
431 PRK05875 short chain dehydroge 65.3 16 0.00034 38.3 6.7 80 643-730 7-94 (276)
432 TIGR01421 gluta_reduc_1 glutat 65.3 12 0.00027 42.8 6.3 33 643-678 166-198 (450)
433 PRK12769 putative oxidoreducta 65.3 15 0.00033 44.3 7.3 34 642-678 326-359 (654)
434 PRK10538 malonic semialdehyde 65.2 23 0.0005 36.5 7.9 74 645-730 2-82 (248)
435 PRK08229 2-dehydropantoate 2-r 65.2 14 0.00031 40.3 6.6 42 644-691 3-44 (341)
436 PRK12481 2-deoxy-D-gluconate 3 65.1 21 0.00046 37.0 7.6 77 643-730 8-91 (251)
437 PRK06181 short chain dehydroge 65.1 16 0.00034 38.0 6.6 78 644-730 2-86 (263)
438 TIGR01809 Shik-DH-AROM shikima 65.0 14 0.00031 39.7 6.4 43 642-689 124-167 (282)
439 PLN02572 UDP-sulfoquinovose sy 65.0 20 0.00044 41.0 8.0 78 642-730 46-144 (442)
440 PRK07806 short chain dehydroge 64.9 23 0.00049 36.3 7.7 79 383-469 7-93 (248)
441 PRK07889 enoyl-(acyl carrier p 64.9 17 0.00037 37.9 6.9 78 643-730 7-93 (256)
442 PRK12746 short chain dehydroge 64.8 26 0.00057 36.0 8.2 80 383-470 7-100 (254)
443 PLN02253 xanthoxin dehydrogena 64.8 20 0.00042 37.7 7.3 77 643-730 18-102 (280)
444 COG1086 Predicted nucleoside-d 64.8 34 0.00074 40.4 9.6 68 378-459 112-179 (588)
445 PRK07023 short chain dehydroge 64.7 17 0.00036 37.3 6.6 61 383-456 2-63 (243)
446 PRK07904 short chain dehydroge 64.7 20 0.00043 37.4 7.3 83 642-730 7-95 (253)
447 PLN02686 cinnamoyl-CoA reducta 64.6 19 0.00041 40.0 7.5 83 642-730 52-136 (367)
448 COG1249 Lpd Pyruvate/2-oxoglut 64.6 23 0.00049 41.0 8.2 35 641-678 171-205 (454)
449 PRK00094 gpsA NAD(P)H-dependen 64.6 25 0.00055 37.9 8.3 41 383-429 2-42 (325)
450 TIGR00936 ahcY adenosylhomocys 64.6 22 0.00047 40.5 7.9 38 382-425 195-232 (406)
451 PRK12824 acetoacetyl-CoA reduc 64.5 26 0.00057 35.6 8.1 79 644-730 3-88 (245)
452 PLN02206 UDP-glucuronate decar 64.5 23 0.0005 40.7 8.3 73 642-730 118-191 (442)
453 TIGR03025 EPS_sugtrans exopoly 64.5 1.8E+02 0.0039 33.2 15.6 38 382-421 125-162 (445)
454 PRK12921 2-dehydropantoate 2-r 64.4 22 0.00047 38.1 7.7 41 645-691 2-42 (305)
455 cd01075 NAD_bind_Leu_Phe_Val_D 64.4 12 0.00026 38.2 5.4 43 642-689 27-69 (200)
456 PTZ00075 Adenosylhomocysteinas 64.4 22 0.00048 41.3 8.0 66 381-469 253-318 (476)
457 COG0499 SAM1 S-adenosylhomocys 64.3 9.3 0.0002 42.5 4.7 36 642-680 208-243 (420)
458 PRK08993 2-deoxy-D-gluconate 3 64.2 25 0.00055 36.4 8.0 77 643-730 10-93 (253)
459 PRK12827 short chain dehydroge 64.2 24 0.00053 35.9 7.7 81 382-470 6-97 (249)
460 TIGR02622 CDP_4_6_dhtase CDP-g 64.2 18 0.00039 39.6 7.1 76 644-730 5-83 (349)
461 PRK00066 ldh L-lactate dehydro 64.1 43 0.00093 36.7 10.0 77 381-470 5-83 (315)
462 COG0654 UbiH 2-polyprenyl-6-me 64.1 12 0.00025 42.0 5.7 32 644-678 3-34 (387)
463 PRK07041 short chain dehydroge 64.0 19 0.00041 36.4 6.8 76 386-470 1-79 (230)
464 PRK08762 molybdopterin biosynt 64.0 73 0.0016 35.7 12.0 35 381-420 134-168 (376)
465 PRK08251 short chain dehydroge 63.7 25 0.00055 36.0 7.8 80 644-730 3-89 (248)
466 PRK13243 glyoxylate reductase; 63.7 14 0.0003 40.8 6.1 36 642-680 149-184 (333)
467 PRK08226 short chain dehydroge 63.6 26 0.00057 36.2 8.0 79 382-469 6-91 (263)
468 PLN02695 GDP-D-mannose-3',5'-e 63.6 33 0.00071 38.2 9.1 74 381-469 20-94 (370)
469 TIGR01472 gmd GDP-mannose 4,6- 63.6 21 0.00046 38.9 7.6 80 384-470 2-88 (343)
470 TIGR01963 PHB_DH 3-hydroxybuty 63.6 23 0.0005 36.2 7.5 77 644-730 2-86 (255)
471 PRK14620 NAD(P)H-dependent gly 63.5 11 0.00024 41.2 5.2 40 383-428 1-40 (326)
472 PRK12779 putative bifunctional 63.4 13 0.00028 46.9 6.5 34 642-678 305-338 (944)
473 PRK12742 oxidoreductase; Provi 63.4 23 0.00051 35.9 7.4 75 643-730 6-83 (237)
474 PRK08159 enoyl-(acyl carrier p 63.3 21 0.00046 37.7 7.3 77 643-730 10-96 (272)
475 PRK06079 enoyl-(acyl carrier p 63.3 22 0.00047 37.0 7.3 76 643-730 7-91 (252)
476 PRK08642 fabG 3-ketoacyl-(acyl 63.2 27 0.00059 35.7 7.9 63 383-456 6-70 (253)
477 PRK06113 7-alpha-hydroxysteroi 63.0 23 0.00049 36.7 7.3 77 643-730 11-96 (255)
478 PF02719 Polysacc_synt_2: Poly 63.0 11 0.00023 41.0 4.9 81 385-470 1-87 (293)
479 PRK06129 3-hydroxyacyl-CoA deh 63.0 10 0.00022 41.1 4.9 33 644-679 3-35 (308)
480 PRK12429 3-hydroxybutyrate deh 63.0 18 0.00039 37.1 6.5 76 644-730 5-89 (258)
481 cd01484 E1-2_like Ubiquitin ac 62.8 21 0.00045 37.6 6.9 81 645-733 1-102 (234)
482 TIGR00507 aroE shikimate 5-deh 62.7 22 0.00048 37.8 7.3 43 642-689 116-158 (270)
483 PRK04148 hypothetical protein; 62.6 16 0.00035 35.1 5.5 56 643-714 17-72 (134)
484 PRK02705 murD UDP-N-acetylmura 62.5 13 0.00028 42.5 5.8 71 645-730 2-76 (459)
485 PRK12481 2-deoxy-D-gluconate 3 62.4 29 0.00063 36.0 8.0 75 383-468 9-91 (251)
486 PRK12809 putative oxidoreducta 62.4 15 0.00032 44.2 6.5 35 642-679 309-343 (639)
487 PLN02240 UDP-glucose 4-epimera 62.4 23 0.00049 38.6 7.5 77 644-730 6-89 (352)
488 PLN02823 spermine synthase 62.4 28 0.00061 38.6 8.2 79 382-469 104-185 (336)
489 PRK07201 short chain dehydroge 62.3 22 0.00048 42.4 8.0 81 382-470 371-458 (657)
490 PRK08643 acetoin reductase; Va 62.3 20 0.00042 37.1 6.7 76 644-730 3-87 (256)
491 PRK07067 sorbitol dehydrogenas 62.3 25 0.00055 36.3 7.5 76 643-730 6-88 (257)
492 PRK14618 NAD(P)H-dependent gly 62.2 12 0.00026 40.9 5.2 41 382-428 4-44 (328)
493 PRK11064 wecC UDP-N-acetyl-D-m 62.1 28 0.00061 39.7 8.4 39 383-427 4-42 (415)
494 COG1004 Ugd Predicted UDP-gluc 62.1 29 0.00062 39.3 8.1 40 383-428 1-40 (414)
495 PRK06841 short chain dehydroge 62.0 30 0.00065 35.6 8.0 78 382-470 15-99 (255)
496 PRK06953 short chain dehydroge 62.0 35 0.00076 34.5 8.3 72 644-730 2-78 (222)
497 PRK06947 glucose-1-dehydrogena 61.9 34 0.00073 35.0 8.3 80 382-469 2-89 (248)
498 PRK12939 short chain dehydroge 61.9 23 0.0005 36.2 7.1 77 643-730 7-92 (250)
499 TIGR03023 WcaJ_sugtrans Undeca 61.9 2.1E+02 0.0045 32.8 15.5 39 382-422 128-166 (451)
500 PRK06057 short chain dehydroge 61.8 22 0.00048 36.8 7.0 74 643-730 7-87 (255)
No 1
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=5.3e-30 Score=283.59 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHH
Q 004558 291 LLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD 363 (745)
Q Consensus 291 L~~~~l~liligt~~~~~ie~------~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~ 363 (745)
.++++..+++.|+++++++++ .++.|||||+++|+||+||||. |.+..||+|+++++++|+++|++.++.++.
T Consensus 140 ~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 140 AVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777776664 6999999999999999999998 788899999999999999999988887765
Q ss_pred -HHHHHHhhhccCcc-cccccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEE
Q 004558 364 -AISEKVDSLRKGKS-EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI 441 (745)
Q Consensus 364 -~i~~~l~~lr~G~~-~v~~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~ 441 (745)
.+.+++++..+++. ....++|+||||||+.|..++++|.+.+ .+|+++|+|+. ++.. ..++.
T Consensus 220 p~i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g------~~vvVId~d~~--~~~~--------~~g~~ 283 (393)
T PRK10537 220 PVIRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRG------QAVTVIVPLGL--EHRL--------PDDAD 283 (393)
T ss_pred HHHHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCC------CCEEEEECchh--hhhc--------cCCCc
Confidence 55555555433332 2345899999999999999999997643 57888887642 2221 23467
Q ss_pred EEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeE
Q 004558 442 CRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIET 521 (745)
Q Consensus 442 ~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~ 521 (745)
++.||++++++|++||+++|+++|++++ +|++|+.+++++|+++|+ .++||++.++++.++++.+|+|.|
T Consensus 284 vI~GD~td~e~L~~AgI~~A~aVI~~t~------dD~~Nl~ivL~ar~l~p~--~kIIa~v~~~~~~~~L~~~GaD~V-- 353 (393)
T PRK10537 284 LIPGDSSDSAVLKKAGAARARAILALRD------NDADNAFVVLAAKEMSSD--VKTVAAVNDSKNLEKIKRVHPDMI-- 353 (393)
T ss_pred EEEeCCCCHHHHHhcCcccCCEEEEcCC------ChHHHHHHHHHHHHhCCC--CcEEEEECCHHHHHHHHhcCCCEE--
Confidence 8999999999999999999999999995 599999999999999985 589999999999999999999984
Q ss_pred EccHHHHHHHHHHHHcCCcH-HHHHHHHh
Q 004558 522 VVAHDVIGRLMIQCALQPGL-AQIWEDIL 549 (745)
Q Consensus 522 V~s~el~a~lLaq~~~~Pg~-~~Vl~~Ll 549 (745)
|++.++.++.|++.+..+.+ .+.+.+++
T Consensus 354 Isp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 354 FSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 77777889999999987655 34555555
No 2
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.97 E-value=8.9e-30 Score=287.62 Aligned_cols=305 Identities=18% Similarity=0.186 Sum_probs=246.3
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
+||+|||+|..|..+++.|...+ +.|+++|++++..+.+.+ ..++.++.||+++.++|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g------~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN------NDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 58999999999999999998654 688999999988776532 13578899999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCC---HHHH--HHcCCCeeeEEccHHHHHHHHHHHHc
Q 004558 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~---~~~l--~~aGad~Ve~V~s~el~a~lLaq~~~ 537 (745)
.+|++++ +|..|+.+++.+|.+++. .++|+++.+.++ ...+ +.+|++.| |.+.++.+..|++.+.
T Consensus 68 ~vi~~~~------~~~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~~~l~~~~~~G~~~v--i~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTD------SDETNMVACQIAKSLFGA--PTTIARVRNPEYAEYDKLFSKEALGIDLL--ISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecC------ChHHHHHHHHHHHHhcCC--CeEEEEECCccccchhhhhhhhcCCccEE--ECHHHHHHHHHHHHhc
Confidence 9999995 488999999999999764 479999988776 3344 67899974 7778888999999999
Q ss_pred CCcHHHHHHHHhcCCC---cceeeccCCccCCCcHHhHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEE
Q 004558 538 QPGLAQIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (745)
Q Consensus 538 ~Pg~~~Vl~~Ll~~~g---~ei~v~~~p~lvG~tf~El~~~-~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVI 612 (745)
.|+..+++. + .... .++.+.+.++++|+++.|+..+ . .++.++++.| +|+ .+.|.++++|++||+|+++
T Consensus 138 ~~~~~~~~~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~ 211 (453)
T PRK09496 138 YPGALDVEE-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFI 211 (453)
T ss_pred CCCceEeee-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEE
Confidence 999876543 1 1111 2344455678999999999865 3 5799999987 455 5689999999999999999
Q ss_pred EeCCCCCCCCCCcchhhccccccCCCCCCCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCC
Q 004558 613 AEDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGL 692 (745)
Q Consensus 613 a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~ 692 (745)
|+.+++.++... . .......++++|||||+.|..+++.|.+. |.++++++.+ +++++.+.+
T Consensus 212 g~~~~l~~~~~~---~--------~~~~~~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~--~~~~~~~~~--- 272 (453)
T PRK09496 212 GAREHIRAVMSE---F--------GRLEKPVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERD--PERAEELAE--- 272 (453)
T ss_pred eCHHHHHHHHHH---h--------CccCCCCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECC--HHHHHHHHH---
Confidence 999877655321 1 11223468999999999999999999864 8999999975 477777765
Q ss_pred CcCCCCCceEEEEEcCcCCHhhHhcCCCCCcceEEEec--Ccchhhhhhc
Q 004558 693 DISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVL 740 (745)
Q Consensus 693 ~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~DavIilT--d~~ni~~~~~ 740 (745)
.+++.. +++||+++.+.|++++++++|++|+++ |+.|++++++
T Consensus 273 ---~~~~~~--~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~ 317 (453)
T PRK09496 273 ---ELPNTL--VLHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLL 317 (453)
T ss_pred ---HCCCCe--EEECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHH
Confidence 233443 588999999999999999999999998 8999998764
No 3
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.94 E-value=3.2e-26 Score=219.97 Aligned_cols=201 Identities=50% Similarity=0.827 Sum_probs=173.1
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHcCCc
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg 540 (745)
|++||+++.+++++++|++++..+|++..+..+.+.++|+++.|.+++++++..|+..|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999999999999999999999999887777899999999999999999999999887 8899999999999999
Q ss_pred HHHHHHHHhcCCCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004558 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (745)
Q Consensus 541 ~~~Vl~~Ll~~~g~ei~v~~~p~lvG~tf~El~~~~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (745)
+.++|+++++++.++||+..||.+.|++|.|+++.|+++++|||.| +|++.+||++|+++++||+++|||+...-.+
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999997 5899999999999999999999999876432
Q ss_pred CCCCcchhhccccccCCCCCCCCceEEEEcccchHHHHHHHHHhhcCCCCe
Q 004558 621 PGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSE 671 (745)
Q Consensus 621 ~~~~~~~i~~~~~~~~~~~~~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~ 671 (745)
-..++. +.. +.. ..++..++.++++|.-+...+++...+.+..+++
T Consensus 156 ~~~~~~-v~~---~n~-~~~~~~~~~~~e~~k~rl~nivkrp~kslsk~Sd 201 (206)
T PF06241_consen 156 QTAYPS-VRM---ENI-TSPEDVRKHAFELWKTRLENIVKRPNKSLSKGSD 201 (206)
T ss_pred eEeccc-ccc---ccc-cCCCchhhhhhhhhHhHHHHHHhCcccccccccc
Confidence 111211 211 111 1233566789999999999999988765444443
No 4
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.92 E-value=6e-26 Score=247.37 Aligned_cols=343 Identities=19% Similarity=0.278 Sum_probs=255.0
Q ss_pred CCCCChhHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-------------CCHHHHHHHHHHhhhcCC
Q 004558 263 KEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSG 329 (745)
Q Consensus 263 ~~~~~l~~rl~y~ld~~~s~~~~~~~l~L~~~~l~liligt~~~~~ie~-------------~s~~dA~y~~~~tvTTvG 329 (745)
.+.+..-+.++|- +.+.+...-++.-|+.+.+.+.+.++.+.+++|+ .++++++|+.++|++|+|
T Consensus 227 lrlmtvpdilqyl--nilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvg 304 (1103)
T KOG1420|consen 227 LRLMTVPDILQYL--NILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVG 304 (1103)
T ss_pred HHhccHHHHHHHH--HHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecc
Confidence 3344445555553 4555555555566666666777778878888763 578999999999999999
Q ss_pred CCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-cccccCeEEEEccCcc--HHHHHHHHHHhc
Q 004558 330 NHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKS-EVIEKNHILILGWSDK--LGSLLKQLAVAN 405 (745)
Q Consensus 330 ygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~l~~lr~G~~-~v~~k~HIVI~G~g~~--g~~L~~eL~~~~ 405 (745)
|||. -.|..||+|.++.+++|+++|+..+.-|++.+.++- ++- |.. ....+.||||||.-.. ..++++.+.+++
T Consensus 305 ygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~-kyg-geyk~ehgkkhivvcghityesvshflkdflhed 382 (1103)
T KOG1420|consen 305 YGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK-KYG-GEYKAEHGKKHIVVCGHITYESVSHFLKDFLHED 382 (1103)
T ss_pred ccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc-ccC-ceeehhcCCeeEEEecceeHHHHHHHHHHHhhcc
Confidence 9998 588899999999999999999998888888887751 111 221 2457899999998653 567777777654
Q ss_pred ccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCC--CCCCcchHHHHH
Q 004558 406 KSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALR 482 (745)
Q Consensus 406 ~s~~~~~iVVLiD~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd--~~~~~sD~~NI~ 482 (745)
...-+-.+|.+-...|+ ++|.+..+ +-+.|.+.+|...++.+|.|+.|++||+++++++. .+++.+|+.||+
T Consensus 383 rddvdvevvflhr~~pdleleglfkr-----hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanim 457 (1103)
T KOG1420|consen 383 RDDVDVEVVFLHRISPDLELEGLFKR-----HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIM 457 (1103)
T ss_pred ccccceEEEEEecCCCCcchHHHHhh-----heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhhe
Confidence 32212233444444443 34444332 34689999999999999999999999999999998 478899999999
Q ss_pred HHHHHhhhcCCCCceEEEEecCCCCHHHHHHc------CCCeeeEEccHHHHHHHHHHHHcCCcHHHHHHHHhcCC----
Q 004558 483 VVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE---- 552 (745)
Q Consensus 483 ~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~a------Gad~Ve~V~s~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~---- 552 (745)
.++++|.+.+++ ++|.++..-.|+.++-.. .+|. +||-.|+.-..+||+|+.||.++.+.+|+.-.
T Consensus 458 rvisiknys~di--rvi~qlmqyhnkayllnipswdwk~gdd--viclaelklgfiaqsclapgfstmmanlfamrsfkt 533 (1103)
T KOG1420|consen 458 RVISIKNYSPDI--RVITQLMQYHNKAYLLNIPSWDWKEGDD--VICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 533 (1103)
T ss_pred EEEEeccCCCch--hHHHHHHHhhchheeecCCCcccccCCc--eEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccC
Confidence 999999999864 688877766666554321 2333 48889999999999999999999999988421
Q ss_pred ---------------CcceeeccC-CccCCCcHHhHhhh-C--CCeEEEEEEEeec---CCeEEeCCCCCceecCCCEEE
Q 004558 553 ---------------NAEFYIKRW-PQLDDLRFEEVVIS-F--PDAIPCGIKVAAE---GGKIILNPDDNYVLKEGDEVL 610 (745)
Q Consensus 553 ---------------g~ei~v~~~-p~lvG~tf~El~~~-~--~~aivIGI~r~~~---~g~v~lnP~~dtvI~~GD~Li 610 (745)
|.|.|.+.. |.++|++|.++... | -+..+++|+.+.+ +.++.+||....+|++|..-+
T Consensus 534 sp~~~~w~ndylrg~gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgf 613 (1103)
T KOG1420|consen 534 SPEEDTWQNDYLRGVGMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGF 613 (1103)
T ss_pred CcccchhHHHHHhhcchhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceE
Confidence 246666655 57999999887654 3 2567788865422 235889999999999999999
Q ss_pred EEEeCCCC
Q 004558 611 VIAEDDDT 618 (745)
Q Consensus 611 VIa~~~~~ 618 (745)
+||.+.+.
T Consensus 614 fiaqsade 621 (1103)
T KOG1420|consen 614 FIAQSADE 621 (1103)
T ss_pred EEecchHH
Confidence 99997553
No 5
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.2e-23 Score=214.16 Aligned_cols=213 Identities=19% Similarity=0.246 Sum_probs=178.2
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
+.++|+|.|++|.++++.|...+ +.|+++|.|++.+++.... ..++.++.||++++++|++||+++||
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g------~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG------HNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC------CceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 46899999999999999999764 7899999999988875432 25788999999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHcCCcHH
Q 004558 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg~~ 542 (745)
++|++++ +|+.|+..|+.+++... .+++||+++++++.+.++..|++.+ ++|+...+..+++.+..|++.
T Consensus 69 ~vva~t~------~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~~i--i~Pe~~~~~~l~~~i~~p~~~ 138 (225)
T COG0569 69 AVVAATG------NDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGADVI--ISPEKLAAKRLARLIVTPGAL 138 (225)
T ss_pred EEEEeeC------CCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCcEE--ECHHHHHHHHHHHHhcCCChh
Confidence 9999995 49999999988877442 2589999999999999999999974 777778899999999999999
Q ss_pred HHHHHHhcCCCc---ceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCC
Q 004558 543 QIWEDILGFENA---EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDT 618 (745)
Q Consensus 543 ~Vl~~Ll~~~g~---ei~v~~~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~ 618 (745)
+++... .+.. ++.+.+.++++|++++|+..++ .++.+++|.| ++...+.|+++++|++||+++++|..+.+
T Consensus 139 ~~~~~~--~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r---~~~~~~~p~g~~~l~~gD~l~v~~~~~~i 213 (225)
T COG0569 139 DVLELA--GGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKR---GGNELIIPRGDTTLEAGDRLIVIGAPEAL 213 (225)
T ss_pred eEEeec--CCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEec---CCCceecCCCCCEecCCCEEEEEEcHHHH
Confidence 987621 1122 2334455689999999998655 5799999997 23267899999999999999999999887
Q ss_pred CCCC
Q 004558 619 YAPG 622 (745)
Q Consensus 619 ~~~~ 622 (745)
.++.
T Consensus 214 ~~~~ 217 (225)
T COG0569 214 REVE 217 (225)
T ss_pred HHHH
Confidence 6654
No 6
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.86 E-value=7.3e-21 Score=215.13 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=177.8
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+|+||||+|..|..+++.|...+ +.|+++|.|++.++.+.++ ..++.++.||+++.+.|+++++++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~------~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG------YSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCcc
Confidence 4799999999999999999998643 6899999999887765442 235778999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHcCCc
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg 540 (745)
|+++|++++ +|..|+.+++.+|.+++ .++|+++.++++.+.++.+|+|.| +.++++.+..|++.+..|+
T Consensus 298 a~~vi~~~~------~~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~~v--i~p~~~~~~~~~~~~~~~~ 366 (453)
T PRK09496 298 ADAFIALTN------DDEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGIDIA--ISPRQATASEILRHVRRGD 366 (453)
T ss_pred CCEEEECCC------CcHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCCEE--ECHHHHHHHHHHHHhhccc
Confidence 999999995 48999999999999865 379999999999999999999974 7777778999999999999
Q ss_pred HHHHHHHHhcC--CCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC-
Q 004558 541 LAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD- 617 (745)
Q Consensus 541 ~~~Vl~~Ll~~--~g~ei~v~~~p~lvG~tf~El~~~~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~- 617 (745)
+..++. +... +..++.+.+.++++|++++|+... .++.++++.| +|+. ++|+++++|++||+|+++|+.++
T Consensus 367 ~~~~~~-~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~~ 440 (453)
T PRK09496 367 IVAVHS-LRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKKF 440 (453)
T ss_pred hhhhhh-hcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcch
Confidence 877654 2111 123556667789999999999642 4799999998 4665 78999999999999999999998
Q ss_pred CCCC
Q 004558 618 TYAP 621 (745)
Q Consensus 618 ~~~~ 621 (745)
+.++
T Consensus 441 ~~~~ 444 (453)
T PRK09496 441 VPDV 444 (453)
T ss_pred HHHH
Confidence 6554
No 7
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.82 E-value=9.3e-20 Score=198.43 Aligned_cols=319 Identities=13% Similarity=0.175 Sum_probs=224.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcc-----CCCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHH
Q 004558 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMML 358 (745)
Q Consensus 285 ~~~~l~L~~~~l~liligt~~~~~ie-----~~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~li 358 (745)
+++++.|...++++++.|.+..-.+. ..+++.++|++++|++|+||||. |.-++.++..++++.+.++++...+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 34555555556677777766665553 37899999999999999999998 7778889999888888887776554
Q ss_pred HHHHHHHHHHHhhhccCcc--cc-cccCeEEEEccCccHH---HHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhh-
Q 004558 359 GLVSDAISEKVDSLRKGKS--EV-IEKNHILILGWSDKLG---SLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL- 431 (745)
Q Consensus 359 g~It~~i~~~l~~lr~G~~--~v-~~k~HIVI~G~g~~g~---~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~- 431 (745)
.-+.....+ +-+.|.. .. ....|+|||--.-... .+++++.... +.....||+. .|.+++...+-+
T Consensus 264 ~~l~~tw~e---rqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efyahp--~~q~~~ivll--sp~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWSE---RQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYAHP--ENQRIQIVLL--SPAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHHH---HhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhcCc--ccccEEEEEe--chHHhcchhhhhe
Confidence 444332222 2334432 11 2467999997664433 3444443211 1122333333 233333333222
Q ss_pred hcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCCC--CCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 004558 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (745)
Q Consensus 432 ~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~--~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (745)
..++++.++.+++|+...+++|+||++..|+++++++... +-...|+.+|+..+++|.+.|+. +-.+++..++.+-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv--~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNV--KQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCch--HHHhhhhchhhhh
Confidence 2456788999999999999999999999999999998773 34567999999999999999864 4667777776665
Q ss_pred HHHHcCCCeeeEEccHHHHHHHHHHHHcCCcHHHHHHHHhcC----C----------------Ccceeecc--C----Cc
Q 004558 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF----E----------------NAEFYIKR--W----PQ 563 (745)
Q Consensus 510 ~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg~~~Vl~~Ll~~----~----------------g~ei~v~~--~----p~ 563 (745)
+.+.+ +. +||-+|+.-.++|+.|.+||+++++.-|+.. + |+|+|-.. + .+
T Consensus 415 hi~~a--e~--~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIEHA--EV--LICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhhhh--ee--EEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 55533 33 4788889999999999999999999877743 1 34565332 2 36
Q ss_pred cCCCcHHhHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 004558 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (745)
Q Consensus 564 lvG~tf~El~~~---~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~ 616 (745)
++|++|...... .+|+-+||+.-.....++.+||.+..++++.|.+|+++-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999877653 25788999964222235789999999999999999999754
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.74 E-value=9e-17 Score=187.05 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=124.5
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
.+||+||||+|+.|..++++|.+.+ ++|+++|+|+++++...+ .++.++.||++++++|++|++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g------~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG------IPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 4799999999999999999998754 789999999998877642 36789999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHcCCc
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg 540 (745)
||++++++++ |.+|..++.++|+.+++ .+|+||++|+++.+.++.+|+|.| +.+++..++.+++.+.+|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~~--~~iiar~~~~~~~~~l~~~Gad~v--v~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRPD--IEIIARAHYDDEVAYITERGANQV--VMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHcCCCEE--EChHHHHHHHHHHHhcCCC
Confidence 9999999853 77888888888988874 589999999999999999999985 7778888999999999999
Q ss_pred HHHHH
Q 004558 541 LAQIW 545 (745)
Q Consensus 541 ~~~Vl 545 (745)
+.++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 98764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.68 E-value=2.6e-15 Score=175.98 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=112.7
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
.++|+||||+|+.|..+++.|...+ ++|+++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANK------MRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 4789999999999999999998654 789999999999887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHH-HHHHHHHHc
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVI-GRLMIQCAL 537 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~-a~lLaq~~~ 537 (745)
|+++|++++ +|+.|+.+|..+|+++|+ .+|+||++|+++.+.++.+|+|. ++++.+. +..+++.++
T Consensus 465 A~~vv~~~~------d~~~n~~i~~~~r~~~p~--~~IiaRa~~~~~~~~L~~~Ga~~---vv~e~~es~l~l~~~~L 531 (601)
T PRK03659 465 AEAIVITCN------EPEDTMKIVELCQQHFPH--LHILARARGRVEAHELLQAGVTQ---FSRETFSSALELGRKTL 531 (601)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHhCCCCE---EEccHHHHHHHHHHHHH
Confidence 999999995 489999999999999985 58999999999999999999997 4455443 555554443
No 10
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.65 E-value=1.2e-15 Score=140.79 Aligned_cols=113 Identities=21% Similarity=0.342 Sum_probs=99.2
Q ss_pred EEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 004558 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (745)
Q Consensus 385 IVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aV 464 (745)
|||||||+.|..++++|...+ ..|+++|.|++.++.+.++ ++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~------~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG------IDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT------SEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC------CEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEE
Confidence 799999999999999999743 5899999999988877542 36789999999999999999999999
Q ss_pred EEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCee
Q 004558 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELI 519 (745)
Q Consensus 465 Iiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~V 519 (745)
|++++ +|+.|+.+|+.+|++++. .++++++.++++.+.++.+|+|.|
T Consensus 67 v~~~~------~d~~n~~~~~~~r~~~~~--~~ii~~~~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 67 VILTD------DDEENLLIALLARELNPD--IRIIARVNDPENAELLRQAGADHV 113 (116)
T ss_dssp EEESS------SHHHHHHHHHHHHHHTTT--SEEEEEESSHHHHHHHHHTT-SEE
T ss_pred EEccC------CHHHHHHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHCCcCEE
Confidence 99995 599999999999999985 589999999999999999999974
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.64 E-value=1.2e-14 Score=171.06 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=111.5
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
.++|+||||+|+.|+.+++.|.+.+ ..++++|+|+++++...+ .+..+++||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSG------VKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 4699999999999999999998754 689999999999887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHH-HHHHHHHHHc
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDV-IGRLMIQCAL 537 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el-~a~lLaq~~~ 537 (745)
|+.+|++++ +|+.|+.++..+|+.+|+. +++||.+|+++.+.++.+|+|.| ..+.. .+..+++.+.
T Consensus 465 A~~vvv~~~------d~~~n~~i~~~ar~~~p~~--~iiaRa~d~~~~~~L~~~Gad~v---~~e~~e~sl~l~~~~L 531 (621)
T PRK03562 465 AEVLINAID------DPQTSLQLVELVKEHFPHL--QIIARARDVDHYIRLRQAGVEKP---ERETFEGALKSGRLVL 531 (621)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHCCCCEE---ehhhHhHHHHHHHHHH
Confidence 999999995 4899999999999999864 79999999999999999999974 23332 2555555443
No 12
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.13 E-value=1.6e-10 Score=99.95 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhhh---ccCCCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 004558 295 TIFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (745)
Q Consensus 295 ~l~liligt~~~~~---ie~~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~ 366 (745)
++.++..|+++++. .|++++.||+||+++|+||+||||. |.+..||+++++.++.|+.+++++++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777766 4678999999999999999999997 788899999999999999999999999888765
No 13
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.93 E-value=7e-10 Score=123.04 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc--C----CCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHH
Q 004558 289 LALLFATIFLIIFGGLALYAVS--D----SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (745)
Q Consensus 289 l~L~~~~l~liligt~~~~~ie--~----~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~I 361 (745)
+++++++++++++++++|+.-- + .|..-++||+++|||||||||. |.|+.|++++..-+++|++++|+-|.+|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 4555667788888888886531 1 5789999999999999999998 8999999999999999999999999988
Q ss_pred HHHHHHH
Q 004558 362 SDAISEK 368 (745)
Q Consensus 362 t~~i~~~ 368 (745)
.+-|...
T Consensus 427 v~nF~~~ 433 (477)
T KOG3713|consen 427 VNNFSMY 433 (477)
T ss_pred hhhHHHH
Confidence 8777665
No 14
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.6e-08 Score=96.22 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=117.0
Q ss_pred ccccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 379 v~~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
....+|++|||+|..|..+++.|...+ ..+++++.+++.++.... .++.++.||+++.+.|.+|++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~~------~~~~vi~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLASG------IPVVVIDSDEDRVELLRE--------LGLLVVLGDATREEVLEAAGI 83 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCcEEEecCCCHHHHHhcCh
Confidence 457899999999999999999998754 478999999877666532 356789999999999999999
Q ss_pred ccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC-CCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHc
Q 004558 459 SKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (745)
Q Consensus 459 ~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d-~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~ 537 (745)
+.|+.++++.. ++..|+.++..++.++|.. +++++..+ ..+...+...|++.+ +.+....+..++..+.
T Consensus 84 ~~a~~vi~~~~------~~~~~~~~~~~~~~~~p~~--~i~~~~~~~~~~~~~l~~~G~~~v--i~~~~~~~~~~~~~~~ 153 (212)
T COG1226 84 ERARAVIVTLS------DDATNVFIVLLARAINPEL--EILARARDLDEAVETLTTVGADEV--VPPTFESALLLARAAL 153 (212)
T ss_pred hheeEEEEecC------CHHHHHHHHHHHHHHCCCC--EEEEEeccchHHHHHHHHcCCCee--ecHHHHHHHHHHHHHh
Confidence 99999999995 4889999999999999965 59999999 666778999999974 5555566777777777
Q ss_pred CCcHHHHH
Q 004558 538 QPGLAQIW 545 (745)
Q Consensus 538 ~Pg~~~Vl 545 (745)
.+......
T Consensus 154 ~~~~~~~~ 161 (212)
T COG1226 154 VGLGGDSV 161 (212)
T ss_pred cccCCchh
Confidence 66554433
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.82 E-value=7.7e-09 Score=95.28 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=67.3
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcce
Q 004558 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 725 (745)
Q Consensus 646 ILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~Da 725 (745)
|+|||||+.|..+++.|.+. +..+.+++.+ +++++.+.+.| .. +++||++|++.|++++++++|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d--~~~~~~~~~~~--------~~--~i~gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRD--PERVEELREEG--------VE--VIYGDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESS--HHHHHHHHHTT--------SE--EEES-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECC--cHHHHHHHhcc--------cc--cccccchhhhHHhhcCccccCE
Confidence 68999999999999999873 6799999975 68888887632 22 5889999999999999999999
Q ss_pred EEEec--Ccchhhhhhc
Q 004558 726 MSHWK--TRLCILTHVL 740 (745)
Q Consensus 726 vIilT--d~~ni~~~~~ 740 (745)
+|++| |+.|+.++.+
T Consensus 66 vv~~~~~d~~n~~~~~~ 82 (116)
T PF02254_consen 66 VVILTDDDEENLLIALL 82 (116)
T ss_dssp EEEESSSHHHHHHHHHH
T ss_pred EEEccCCHHHHHHHHHH
Confidence 99999 8899888764
No 16
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=4.5e-08 Score=101.59 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=70.9
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHH-hhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~-l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.+++|+|.|+.|..+++.|.+ .|.+|.+|+.+ ++++++ +++ ...++.++||++|++.|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---~g~~Vv~Id~d--~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---EGHNVVLIDRD--EERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---CCCceEEEEcC--HHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCc
Confidence 379999999999999999986 48999999975 688887 442 123456899999999999999999
Q ss_pred cceEEEec--Ccchhhhhhc
Q 004558 723 FDSMSHWK--TRLCILTHVL 740 (745)
Q Consensus 723 ~DavIilT--d~~ni~~~~~ 740 (745)
||++|++| |+.|++.+.+
T Consensus 67 aD~vva~t~~d~~N~i~~~l 86 (225)
T COG0569 67 ADAVVAATGNDEVNSVLALL 86 (225)
T ss_pred CCEEEEeeCCCHHHHHHHHH
Confidence 99999999 8999988764
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.66 E-value=3.2e-08 Score=110.33 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=81.6
Q ss_pred hhchHHHhhhhhhcccccCCCCChhHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC-----------CC
Q 004558 245 YLDYLPQIKNFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-----------SS 313 (745)
Q Consensus 245 ~~d~~~~~~~~~~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~~l~L~~~~l~liligt~~~~~ie~-----------~s 313 (745)
+++-+..+ +.+|-.++.++.+-|+-+...+ +. +.+ .++....+.++.+++.+.+.|..|. .+
T Consensus 197 alrslRFl--QILRmlr~DRrggTWKLLGSvV--~a--H~~-ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~T 269 (654)
T KOG1419|consen 197 ALRSLRFL--QILRMLRMDRRGGTWKLLGSVV--YA--HSK-ELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPT 269 (654)
T ss_pred hhhhhHHH--HHHHHHHhhccCchhhhhhhhh--hh--hHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchh
Confidence 34444433 3456666777777665554433 11 122 2344445555555556666666653 47
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004558 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKV 369 (745)
Q Consensus 314 ~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~l 369 (745)
+.||+||.++|+||+||||. |.|+.||+++..+.++|+.+|+.--|++...|.=++
T Consensus 270 yADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV 326 (654)
T KOG1419|consen 270 YADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV 326 (654)
T ss_pred HHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 99999999999999999998 899999999999999999999988887776665544
No 18
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.61 E-value=4.3e-09 Score=111.85 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHH
Q 004558 289 LALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (745)
Q Consensus 289 l~L~~~~l~liligt~~~~~ie~------~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~I 361 (745)
++++++.+.+|++++..|+.-.+ .|..|||||+++|||||||||. |.|.+|+++.-+..+.|++.+|.-+.+|
T Consensus 363 LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 44555666778888877765422 5789999999999999999998 8999999999999999998888777766
Q ss_pred HHHHH
Q 004558 362 SDAIS 366 (745)
Q Consensus 362 t~~i~ 366 (745)
.+-+.
T Consensus 443 VsNFn 447 (507)
T KOG1545|consen 443 VSNFN 447 (507)
T ss_pred Eeccc
Confidence 65443
No 19
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.47 E-value=4.3e-07 Score=111.01 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 004558 317 ALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (745)
Q Consensus 317 A~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~ 367 (745)
|+||+++|+||+||||. |.+..+|+|++++|++|+++|++++|.+++.+.+
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998 7889999999999999999999999999887654
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.45 E-value=3.3e-07 Score=108.43 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=71.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.++|+|||+|+.|..+++.|.+ .|.++++||.+ ++|++.+.+. +.. +++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~d--~~~v~~~~~~--------g~~--v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---SGVKMTVLDHD--PDHIETLRKF--------GMK--VFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---CCCCEEEEECC--HHHHHHHHhc--------CCe--EEEEeCCCHHHHHhcCCCc
Confidence 4689999999999999999986 48999999975 5899988752 233 4889999999999999999
Q ss_pred cceEEEec--Ccchhhhhhc
Q 004558 723 FDSMSHWK--TRLCILTHVL 740 (745)
Q Consensus 723 ~DavIilT--d~~ni~~~~~ 740 (745)
+|.+|+++ |+.|+.+..+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ 484 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVEL 484 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHH
Confidence 99999999 6888876543
No 21
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.35 E-value=7.1e-07 Score=105.33 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=69.4
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
..+|+|||+|+.|..+++.|.+ .|.++++||.+ ++|++.+.+.| . .+++||++|++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~g~~vvvID~d--~~~v~~~~~~g--------~--~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA---NKMRITVLERD--ISAVNLMRKYG--------Y--KVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh---CCCCEEEEECC--HHHHHHHHhCC--------C--eEEEeeCCCHHHHHhcCCcc
Confidence 3589999999999999999986 48999999975 58888887532 2 35889999999999999999
Q ss_pred cceEEEec--Ccchhhhhh
Q 004558 723 FDSMSHWK--TRLCILTHV 739 (745)
Q Consensus 723 ~DavIilT--d~~ni~~~~ 739 (745)
+|++|+++ |+.|+....
T Consensus 465 A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 465 AEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 99999999 677766543
No 22
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.34 E-value=8.1e-07 Score=99.37 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=64.9
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.++++|||||+.|..++++|.+ .|.++++|++++ . ++... ++.. +++||++|++.|+++|+++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~---~g~~vvVId~d~--~-~~~~~---------~g~~--vI~GD~td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQ---RGQAVTVIVPLG--L-EHRLP---------DDAD--LIPGDSSDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHH---CCCCEEEEECch--h-hhhcc---------CCCc--EEEeCCCCHHHHHhcCccc
Confidence 4689999999999999999975 478999999642 1 11111 2333 4899999999999999999
Q ss_pred cceEEEec--Ccchhhhhhc
Q 004558 723 FDSMSHWK--TRLCILTHVL 740 (745)
Q Consensus 723 ~DavIilT--d~~ni~~~~~ 740 (745)
|+++|+++ |+.|+++++.
T Consensus 303 A~aVI~~t~dD~~Nl~ivL~ 322 (393)
T PRK10537 303 ARAILALRDNDADNAFVVLA 322 (393)
T ss_pred CCEEEEcCCChHHHHHHHHH
Confidence 99999999 7889987654
No 23
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.4e-06 Score=90.64 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-c-CC------c-cChhhhhHHHHhHHHHHHHHH
Q 004558 288 LLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-R-VG------T-GPRIVSVSISSGGMLIFAMML 358 (745)
Q Consensus 288 ~l~L~~~~l~liligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~-~-~t------~-~gRi~~v~lil~Gi~ifa~li 358 (745)
++.++.+.++++..|+..|..+|+||++||+|+.++|+||+||||. + +. . .=+.+.++.|++|+.+++.++
T Consensus 161 ~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 161 VLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL 240 (350)
T ss_pred HHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence 4566666778888899999999999999999999999999999996 2 22 1 236678999999999998888
Q ss_pred HHHHHHHHHH
Q 004558 359 GLVSDAISEK 368 (745)
Q Consensus 359 g~It~~i~~~ 368 (745)
.+++-.+...
T Consensus 241 NllvLrf~t~ 250 (350)
T KOG4404|consen 241 NLLVLRFMTM 250 (350)
T ss_pred HHHHHHHHHh
Confidence 8776555443
No 24
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.24 E-value=2.6e-06 Score=99.76 Aligned_cols=77 Identities=18% Similarity=0.086 Sum_probs=65.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.++++|||+|+.|..+++.|.+. |.++.+||.+ +++++.+.+. +. .+++||++|++.|+++++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d--~~~~~~~~~~--------g~--~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETS--RTRVDELRER--------GI--RAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHC--------CC--eEEEcCCCCHHHHHhcCccc
Confidence 57999999999999999999864 8899999974 6888888752 22 35889999999999999999
Q ss_pred cceEEEec--Ccch
Q 004558 723 FDSMSHWK--TRLC 734 (745)
Q Consensus 723 ~DavIilT--d~~n 734 (745)
+|++++++ |+.|
T Consensus 482 a~~viv~~~~~~~~ 495 (558)
T PRK10669 482 ARWLLLTIPNGYEA 495 (558)
T ss_pred cCEEEEEcCChHHH
Confidence 99999887 4444
No 25
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.23 E-value=2.7e-06 Score=82.53 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=57.2
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
-.+++...++++|++++|+..+. .+++||||.| +++.+++|.+.++|++||.|||+|+.....++
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~SPgPy~vle~gDtlvviG~~~~~~r~ 153 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILSPGPYTVLEAGDTLVVIGEETGLKRA 153 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecCCCchhhhcCCCEEEEEecchHhHHH
Confidence 35677788899999999999774 6899999998 58899999999999999999999998876654
No 26
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.96 E-value=4.2e-06 Score=70.39 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=46.4
Q ss_pred ceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004558 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (745)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (745)
++.+.+.++++|++++|+.... +++.++||.| ++..+.|.++++|++||.|+++|+.+++.+
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R----~~~~~~p~~~~~l~~gD~l~v~g~~~~i~~ 65 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR----GGEIIIPDGDTVLQAGDILIVVGDPEDIER 65 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE----TEEEES--TT-BE-TTEEEEEEEEHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE----CCEEECCCCCCEECCCCEEEEEECHHHHHH
Confidence 4566677899999999976542 3899999987 367889999999999999999999877544
No 27
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.00011 Score=78.77 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=138.4
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc-cCcccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r-AgI~~A 461 (745)
+.|+|+|-|..+.++++.+....+ .+...+++.++.+..+... .-..+.+..-|+++...|++ .+-+..
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~~-------~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPKN-------YPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhccccc-------CcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 579999999999999998876543 2456666677654433211 12357788889999998876 577888
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeeeEEccHHHHHHHHHHHHcCCcH
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (745)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~Pg~ 541 (745)
+|+|+.-+ -.++..+.-++|..+++....|+.-....++-+..+...++ .+..++..++.....+ ||+
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~---lid~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLI---LIDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhccccee---ecchHHHHHHHHHHhc--CCc
Confidence 99999873 45677777888888886544444443323333334445554 3545665555544333 333
Q ss_pred HHHHHHH-hc-CCCcceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCC
Q 004558 542 AQIWEDI-LG-FENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (745)
Q Consensus 542 ~~Vl~~L-l~-~~g~ei~v~~~p~lvG~tf~El~~~~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~ 619 (745)
...-..+ ++ ++-.|+.+...+.++=+.++++.. ..+.+++++| +|+ .+-|..+.+|++||+++|+|++..+.
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YR---N~k-lll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYR---NDK-LLLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEE---CCE-EEEeccceEecCCCEEEEeCChHHHH
Confidence 2211111 11 012456666778888888888874 4688999998 465 55699999999999999999987544
Q ss_pred C
Q 004558 620 A 620 (745)
Q Consensus 620 ~ 620 (745)
.
T Consensus 214 ~ 214 (471)
T COG3400 214 A 214 (471)
T ss_pred H
Confidence 3
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.7e-06 Score=92.98 Aligned_cols=95 Identities=21% Similarity=0.356 Sum_probs=74.0
Q ss_pred HHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC------CCHHHHHHHHHHhhhcCCCCCC-cCCccChhh
Q 004558 270 KRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIV 342 (745)
Q Consensus 270 ~rl~y~ld~~~s~~~~~~~l~L~~~~l~liligt~~~~~ie~------~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~ 342 (745)
..+.|-|...-+..+ ++++.++.++|+++++.||.--+ .++..|||++++|+||.||||. |.|.+|+||
T Consensus 311 RILGYTLKSCASELG----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIf 386 (632)
T KOG4390|consen 311 RILGYTLKSCASELG----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIF 386 (632)
T ss_pred chhhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHh
Confidence 356677766656555 34555667778888887766433 5789999999999999999998 788899999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 343 SVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 343 ~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
.-+..+.|+++++.-+.+|.+-+...
T Consensus 387 GsiCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 387 GSICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred hhhhcccceEEEeccccEEEechhHH
Confidence 99999999999888777776665543
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.78 E-value=8.2e-05 Score=81.66 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=65.9
Q ss_pred chhHHHHHHHHH-HHHHHHHHhhhhhhc-------cC--------------CCHHHHHHHHHHhhhcCCCCCC---cCCc
Q 004558 283 YPYAKLLALLFA-TIFLIIFGGLALYAV-------SD--------------SSFAEALWLSWTFVADSGNHAD---RVGT 337 (745)
Q Consensus 283 ~~~~~~l~L~~~-~l~liligt~~~~~i-------e~--------------~s~~dA~y~~~~tvTTvGygd~---~~t~ 337 (745)
-+|+.++.++++ .++..++.+++||++ +. .+|.+|||+++.|.||+|||.. +...
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 457765555543 445556666666553 11 5899999999999999999985 3445
Q ss_pred cChhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCcccccccCeEEEEcc
Q 004558 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGW 390 (745)
Q Consensus 338 ~gRi~~v~lil~Gi~ifa~lig~It~~i~~~l~~lr~G~~~v~~k~HIVI~G~ 390 (745)
.+-+++++-.++|+++.++++|++..-+. +=+++...+..+++.||+-.
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~s----rP~~R~~tI~FS~~AVI~~~ 160 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFS----RPKKRASTILFSKKAVIAPR 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SCCCGGGSEEE-SSEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccceEEEEeeeEEeec
Confidence 66677778889999999999887764432 21211123556777777654
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.0024 Score=71.17 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccC--------CCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHH
Q 004558 290 ALLFATIFLIIFGGLALYAVSD--------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGL 360 (745)
Q Consensus 290 ~L~~~~l~liligt~~~~~ie~--------~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~ 360 (745)
.|++.++.++++.++.+.+-|. .++.++.|+...|+.++||||. |.|..||.++++.-++|.++.++++++
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAv 335 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAV 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHH
Confidence 3445566667777777766652 3499999999999999999998 889999999999999999999988887
Q ss_pred HHHHH
Q 004558 361 VSDAI 365 (745)
Q Consensus 361 It~~i 365 (745)
|+--+
T Consensus 336 isRKL 340 (489)
T KOG3684|consen 336 IARKL 340 (489)
T ss_pred HHHHH
Confidence 76443
No 31
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.53 E-value=0.0001 Score=72.53 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=59.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|+|+|||++|...++.|.++ |.+|++|+. +.++++.+ +..+. .+.+.+++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---ga~V~VIsp----~~~~~l~~-------l~~i~--------~~~~~~~~~dl~ 69 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---GAFVTVVSP----EICKEMKE-------LPYIT--------WKQKTFSNDDIK 69 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcC----ccCHHHHh-------ccCcE--------EEecccChhcCC
Confidence 457999999999999999999764 899999974 45555543 23322 246788889999
Q ss_pred CcceEEEec--Ccchhhhhh
Q 004558 722 TFDSMSHWK--TRLCILTHV 739 (745)
Q Consensus 722 ~~DavIilT--d~~ni~~~~ 739 (745)
.+|.|+++| +++|...+.
T Consensus 70 ~a~lViaaT~d~e~N~~i~~ 89 (157)
T PRK06719 70 DAHLIYAATNQHAVNMMVKQ 89 (157)
T ss_pred CceEEEECCCCHHHHHHHHH
Confidence 999999999 899987653
No 32
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00014 Score=80.90 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 004558 311 DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSL 372 (745)
Q Consensus 311 ~~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~l~~l 372 (745)
.|+|.+|+|++++++||+|||+. |.|..||+++++..++|+-++.+.++-+...+.+.+..+
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999998 789999999999999999999888888777777765553
No 33
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.39 E-value=0.00019 Score=85.24 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCc-CCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 314 FAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 314 ~~dA~y~~~~tvTTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
+..|+||+++|+||+|||+.+ .+....+|++++|++|++++|++||-++..++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 467999999999999999984 6778899999999999999999999998877664
No 34
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00023 Score=75.94 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=77.0
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHhhchHHHhhh--hh-hcccccCCCCChhHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 004558 223 DGRTVALYSVIVT-LLMPFVLYKYLDYLPQIKN--FS-KRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFL 298 (745)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~l~~~~d~~~~~~~--~~-~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~~l~L~~~~l~l 298 (745)
+.|.+++++..|+ |++|+.+|-++..=.+.+. .+ .+..+.+++..++ ..-++.+...+
T Consensus 6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s------------~~d~r~~er~i------ 67 (350)
T KOG4404|consen 6 NVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLS------------EEDYRELERVI------ 67 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCC------------HHHHHHHHHHH------
Confidence 4788999999999 9999999877765543311 11 1112222223322 22222222111
Q ss_pred HHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 004558 299 IIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (745)
Q Consensus 299 iligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~ 367 (745)
+-+.---.-..|.|.-||||+.+.+||+|||-. |.|.+||+|.++..++|+-+--+++..+.|-+..
T Consensus 68 --~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt 135 (350)
T KOG4404|consen 68 --LKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT 135 (350)
T ss_pred --HhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence 101000111358999999999999999999987 7899999999999888865544444444444433
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.24 E-value=5.7e-05 Score=83.99 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC-cCCccCh--------hhhhHHHHhHHHHHHHHH
Q 004558 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPR--------IVSVSISSGGMLIFAMML 358 (745)
Q Consensus 293 ~~~l~liligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~-~~t~~gR--------i~~v~lil~Gi~ifa~li 358 (745)
.++++.+..|+.++...|+++|++|||++++++||+||||. |.+..++ .+..+++++|+..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 222 GISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 33445666778888888999999999999999999999998 6665555 467778888888877655
No 36
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.09 E-value=0.0013 Score=59.85 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=52.5
Q ss_pred cCCCeeeEEccHHHHHHHHHHHHcCCcHHHHHHHHhcCC--------------------CcceeeccCC-ccCCCcHHhH
Q 004558 514 VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEV 572 (745)
Q Consensus 514 aGad~Ve~V~s~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~--------------------g~ei~v~~~p-~lvG~tf~El 572 (745)
-++|.| |+.+|+...+||+++..||+++++.+|+... ++++|....| .+.|++|.++
T Consensus 8 ~~~d~v--Ic~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~ 85 (101)
T PF03493_consen 8 KFADQV--ICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEA 85 (101)
T ss_dssp TTT-EE--EEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHH
T ss_pred ccCceE--EEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHH
Confidence 345764 8889999999999999999999999999652 1466766664 7999999999
Q ss_pred hhh-C--CCeEEEEEE
Q 004558 573 VIS-F--PDAIPCGIK 585 (745)
Q Consensus 573 ~~~-~--~~aivIGI~ 585 (745)
... + .+++++||+
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 875 2 489999984
No 37
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0017 Score=73.59 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 314 ~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
+..++||+++.+||+|||.+ +.|...++|++.+|++|-++++.++|-++..|++.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 68899999999999999998 67889999999999999999999999888777654
No 38
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.00 E-value=0.0032 Score=61.94 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=60.5
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
...+++|+|+|+.+.+.++.|...+ +.|++++.+ ..+++. ++ ..+.+ ..+.++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g------a~V~VIsp~--~~~~l~-~l------~~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG------AFVTVVSPE--ICKEMK-EL------PYITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCc--cCHHHH-hc------cCcEE------EecccChhcCCC
Confidence 3568999999999999999998764 567777533 222221 11 11222 356778888999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (745)
|+.||++|+ +|+.|..++..++..
T Consensus 71 a~lViaaT~------d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATN------QHAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCC------CHHHHHHHHHHHHHC
Confidence 999999995 489999999988874
No 39
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0014 Score=65.04 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=52.7
Q ss_pred eeeccCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 556 FYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 556 i~v~~~p~lvG~tf~El~~~-~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
+.+.+.|.++|+|++|+... ..++.||+|+| |+.-+++|+.++.|++||.|++-|++.....+
T Consensus 123 v~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~l 186 (204)
T COG3273 123 VRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVELL 186 (204)
T ss_pred EEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHHH
Confidence 45667789999999999865 35899999998 45678999999999999999999987765444
No 40
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.61 E-value=0.0039 Score=63.82 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|||+|+|++|...++.|.++ |.+|++|+....++ .+.+.+. -.+.+ ..+.+++.++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~---ga~V~VIs~~~~~~-l~~l~~~---------~~i~~------~~~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY---GAHIVVISPELTEN-LVKLVEE---------GKIRW------KQKEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCHH-HHHHHhC---------CCEEE------EecCCChhhcC
Confidence 346999999999999999998764 88999999653332 2233321 11222 23456677889
Q ss_pred CcceEEEec--Ccchhhh
Q 004558 722 TFDSMSHWK--TRLCILT 737 (745)
Q Consensus 722 ~~DavIilT--d~~ni~~ 737 (745)
.+|.||++| +++|-..
T Consensus 70 ~adlViaaT~d~elN~~i 87 (202)
T PRK06718 70 DAFLVIAATNDPRVNEQV 87 (202)
T ss_pred CceEEEEcCCCHHHHHHH
Confidence 999999999 7777544
No 41
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.33 E-value=0.0073 Score=68.99 Aligned_cols=96 Identities=8% Similarity=0.157 Sum_probs=70.9
Q ss_pred HHhhhhhhhccchhHHHHHHHHHHHHHHHHHhhhhhhc---------------cCCCHHHHHHHHHHhhhcCCCCCCcCC
Q 004558 272 VAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV---------------SDSSFAEALWLSWTFVADSGNHADRVG 336 (745)
Q Consensus 272 l~y~ld~~~s~~~~~~~l~L~~~~l~liligt~~~~~i---------------e~~s~~dA~y~~~~tvTTvGygd~~~t 336 (745)
+-.+||+.|+..-+.++..-+.-++-++=+-+++|||. +|..+.-|+||++.|++|+|....|.+
T Consensus 347 ~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~ 426 (815)
T KOG0499|consen 347 FNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQT 426 (815)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcch
Confidence 33456777776544444433333444455566777664 246799999999999999999888888
Q ss_pred ccChhhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 004558 337 TGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (745)
Q Consensus 337 ~~gRi~~v~lil~Gi~ifa~lig~It~~i~~ 367 (745)
....+|.++--+.|+++|+.+||-+=+.+..
T Consensus 427 ~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 427 LFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888889999999999987766654
No 42
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.01 E-value=0.096 Score=59.77 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=130.4
Q ss_pred ccCeEEEEccCccHHHHH------HHHHHhcc-cCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHH
Q 004558 381 EKNHILILGWSDKLGSLL------KQLAVANK-SIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~------~eL~~~~~-s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L 453 (745)
+.+|||||=+++.-..++ --|+..|- -+.-+|+|++-+-+ -+++.-+.+ + .-..+.+..|+|.+..+|
T Consensus 732 lnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsie--ylrrewktl-~--nlpkisilngsplsradl 806 (1103)
T KOG1420|consen 732 LNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIE--YLRREWKTL-H--NLPKISILNGSPLSRADL 806 (1103)
T ss_pred ecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccHH--HHHHHHHHH-h--CCCceeecCCCCCchhhh
Confidence 579999999888633332 22332221 11123555554433 233222221 1 124688999999999999
Q ss_pred hccCcccccEEEEecCCC----CCCcchHHHHHHHHHHhhhcC----------------------------------CCC
Q 004558 454 KKVSVSKARAIIVLASDE----NADQSDARALRVVLSLTGVKE----------------------------------GLR 495 (745)
Q Consensus 454 ~rAgI~~A~aVIiltdd~----~~~~sD~~NI~~~Lsar~l~p----------------------------------~~~ 495 (745)
+.++|.-+|++++++.+. +..-.|.+.|++.+.+|.+.- +.+
T Consensus 807 ravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~n 886 (1103)
T KOG1420|consen 807 RAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGVN 886 (1103)
T ss_pred hhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCcccccC
Confidence 999999999999998762 344568888888888876521 112
Q ss_pred ceEEEEecCCCCHHHHHHcCCCe--eeEE------ccH----HHHHHHHHHHHcCCcHHHHHHHHhcC-----------C
Q 004558 496 GHVVVEMSDLDNEPLVKLVGGEL--IETV------VAH----DVIGRLMIQCALQPGLAQIWEDILGF-----------E 552 (745)
Q Consensus 496 ~~IIArv~d~e~~~~l~~aGad~--Ve~V------~s~----el~a~lLaq~~~~Pg~~~Vl~~Ll~~-----------~ 552 (745)
.++|.++.|..|.+.+.+-.-|. -|.. |.. .+...+|...-.+..+.+++..|.+. +
T Consensus 887 vpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelilae 966 (1103)
T KOG1420|consen 887 VPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILAE 966 (1103)
T ss_pred chhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHhc
Confidence 34555555555554443211110 0111 001 11233444333344444444443332 1
Q ss_pred Cc---------------------ceeeccCC--c-cCCCcHHhHhhh---CCCeEEEEEEEeec---------CCeEEeC
Q 004558 553 NA---------------------EFYIKRWP--Q-LDDLRFEEVVIS---FPDAIPCGIKVAAE---------GGKIILN 596 (745)
Q Consensus 553 g~---------------------ei~v~~~p--~-lvG~tf~El~~~---~~~aivIGI~r~~~---------~g~v~ln 596 (745)
|+ ++.+...| . -.|-.++++.-. -++..-+|++|-++ ..-++-|
T Consensus 967 gaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvitn 1046 (1103)
T KOG1420|consen 967 GAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVITN 1046 (1103)
T ss_pred cccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEecC
Confidence 11 11122222 1 234577887643 25788899987321 1237789
Q ss_pred CCCCceecCCCEEEEEEeCCC
Q 004558 597 PDDNYVLKEGDEVLVIAEDDD 617 (745)
Q Consensus 597 P~~dtvI~~GD~LiVIa~~~~ 617 (745)
|+.+..|.+.|.++++-.-+.
T Consensus 1047 pp~ef~l~ptd~vfvlmqfdp 1067 (1103)
T KOG1420|consen 1047 PPYEFELVPTDLVFVLMQFDP 1067 (1103)
T ss_pred CchhheecccceEEEEEeeCC
Confidence 999999999999999987553
No 43
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.98 E-value=0.025 Score=58.07 Aligned_cols=74 Identities=16% Similarity=-0.004 Sum_probs=53.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.++++|+|+|++|..-++.|.+. |.+|++++.++.++-. .+++. .+ +..+.++.... . ++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~---ga~VtVvsp~~~~~l~-~l~~~-------~~--i~~~~~~~~~~-d-----l~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA---GAQLRVIAEELESELT-LLAEQ-------GG--ITWLARCFDAD-I-----LEG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHH-HHHHc-------CC--EEEEeCCCCHH-H-----hCC
Confidence 46999999999999999998764 8999999987654433 34431 12 44577877633 3 467
Q ss_pred cceEEEec-Cc-chh
Q 004558 723 FDSMSHWK-TR-LCI 735 (745)
Q Consensus 723 ~DavIilT-d~-~ni 735 (745)
+|.||+.| |+ +|-
T Consensus 70 ~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 70 AFLVIAATDDEELNR 84 (205)
T ss_pred cEEEEECCCCHHHHH
Confidence 99999999 43 663
No 44
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.78 E-value=0.027 Score=63.46 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCcCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 314 ~~dA~y~~~~tvTTvGygd~~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
+.-++||+..|+||.|--..|.+....+|.++=.++|+++||.++|-|.+.+.+.
T Consensus 184 Y~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 3568999999999999888888889999999999999999999999888777764
No 45
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.036 Score=54.49 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.-..++++||+|+.|..++..|... +..+.+++.+ .++.+.+...| . .++.||+++.+.|+.+++
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~--~~~~~~~~~~~--------~--~~~~gd~~~~~~l~~a~~ 83 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSD--EDRVELLRELG--------L--LVVLGDATREEVLEAAGI 83 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHCC--------C--cEEEecCCCHHHHHhcCh
Confidence 3456899999999999999999864 6688888864 46777776532 1 247899999999999999
Q ss_pred CCcceEEEec--Ccchhhhhh
Q 004558 721 ETFDSMSHWK--TRLCILTHV 739 (745)
Q Consensus 721 ~~~DavIilT--d~~ni~~~~ 739 (745)
+.++.+++.. +..|+....
T Consensus 84 ~~a~~vi~~~~~~~~~~~~~~ 104 (212)
T COG1226 84 ERARAVIVTLSDDATNVFIVL 104 (212)
T ss_pred hheeEEEEecCCHHHHHHHHH
Confidence 9999999999 555655443
No 46
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.64 E-value=0.045 Score=56.09 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=57.9
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|+|+|+.|...++.|...+ ..|++++.+. +++...... ..+.+. ...++.+++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g------a~V~VIs~~~~~~l~~l~~~-------~~i~~~------~~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG------AHIVVISPELTENLVKLVEE-------GKIRWK------QKEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CeEEEEcCCCCHHHHHHHhC-------CCEEEE------ecCCChhhcCC
Confidence 569999999999999999998764 5677776553 333443321 234332 23455677889
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhh
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTG 489 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~ 489 (745)
|+.||++|+ +++.|..++..++.
T Consensus 71 adlViaaT~------d~elN~~i~~~a~~ 93 (202)
T PRK06718 71 AFLVIAATN------DPRVNEQVKEDLPE 93 (202)
T ss_pred ceEEEEcCC------CHHHHHHHHHHHHh
Confidence 999999995 48889888777643
No 47
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.1 Score=59.24 Aligned_cols=113 Identities=19% Similarity=0.330 Sum_probs=75.7
Q ss_pred ccEEEEEeCCCCHHHHhccCcccccEEEEecCCC---CCCcchHHHHHHHHHHhhhcCCCCceEEEEecC----------
Q 004558 438 TSVICRSGSPLILADLKKVSVSKARAIIVLASDE---NADQSDARALRVVLSLTGVKEGLRGHVVVEMSD---------- 504 (745)
Q Consensus 438 ~~V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~---~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d---------- 504 (745)
.+|++..|...+.++|.|||+..|..|+++-+-. +++.+|-.+|.++.-+..++|.+ +.|.++..
T Consensus 762 p~vywm~g~v~~ld~llragvs~ae~vvvvke~a~~aee~tadcntii~vq~~~r~fp~l--r~itelt~atnmrf~qf~ 839 (1087)
T KOG3193|consen 762 PDVYWMKGKVGNLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFPRL--RMITELTHATNMRFVQFN 839 (1087)
T ss_pred chhhhhhcCcCcHHHHHHhcccccceEEEEehhhhhhhhhccccchhhhHHHHHHhchhH--HHHHHHhhhccceEEeec
Confidence 5788999999999999999999999999985432 34556777788887777777742 22222221
Q ss_pred CCCH-HH----H----HHcCCC--ee-------eEEccHHHHHHHHHHHHcCCcHHHHHHHHhcCC
Q 004558 505 LDNE-PL----V----KLVGGE--LI-------ETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE 552 (745)
Q Consensus 505 ~e~~-~~----l----~~aGad--~V-------e~V~s~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~ 552 (745)
+.++ .+ + ++-|.. .. --|.+..+..+++-|++..|-+.++..-|++-+
T Consensus 840 ~h~~ysl~~sr~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgid 905 (1087)
T KOG3193|consen 840 PHNAYSLAQSRFEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGID 905 (1087)
T ss_pred CcchhHHHHHHHHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 1111 11 1 111110 00 014567778899999999999999998888753
No 48
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.62 E-value=0.034 Score=65.51 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=51.5
Q ss_pred ceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 004558 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (745)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~~ 622 (745)
++.+.+.++++|++++|+.. ..++.++++.| +|+ .+.|+++++|++||+++++++.++..+..
T Consensus 418 ~~~V~~~s~~~G~~l~el~l-p~~~~i~~v~R---~g~-~~~p~~~t~L~~GD~l~l~~~~~~l~~l~ 480 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRL-PRGALIALIIR---DGK-LLVPTGSTRLKAGDVLLVLGPERDLPALE 480 (562)
T ss_pred EEEECCCCcccCCCHHHcCC-CCCcEEEEEEE---CCE-EeCCCCCCeECCCCEEEEEECHHHHHHHH
Confidence 45566678999999999963 24799999998 465 47999999999999999999988876543
No 49
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.39 E-value=0.044 Score=64.63 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=52.4
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
..+.+.+.++++|+++.|+..+. .++.+++|+| +++. ..|.++++|++||.+++.|+.+++.++
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 34566666789999999999764 5799999987 4655 469999999999999999999886554
No 50
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.05 E-value=0.23 Score=48.84 Aligned_cols=69 Identities=25% Similarity=0.151 Sum_probs=56.3
Q ss_pred EEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004558 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (745)
Q Consensus 385 IVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (745)
|+|+|+ |..|..++++|...+ +.|+++-++++..+. ..++.++.||..+++.+.++ +..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~------~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG------HEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------SEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHCC------CEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689997 778999999999765 677777788876554 24688999999999988886 558999
Q ss_pred EEEecCC
Q 004558 464 IIVLASD 470 (745)
Q Consensus 464 VIiltdd 470 (745)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9998864
No 51
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.97 E-value=0.078 Score=52.40 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.-++++|+|+|+.|.-+|+.|... |..|+|.|.+|. ...+...| | ..+ . .|+++ +.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DPi-~alqA~~d-G--------f~v--~--------~~~~a-~~ 77 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDPI-RALQAAMD-G--------FEV--M--------TLEEA-LR 77 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSHH-HHHHHHHT-T---------EE--E---------HHHH-TT
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECChH-HHHHhhhc-C--------cEe--c--------CHHHH-Hh
Confidence 356899999999999999999875 999999998762 23344434 2 222 1 13332 56
Q ss_pred CcceEEEecCcchhhh
Q 004558 722 TFDSMSHWKTRLCILT 737 (745)
Q Consensus 722 ~~DavIilTd~~ni~~ 737 (745)
++|.||..|-..+|++
T Consensus 78 ~adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 78 DADIFVTATGNKDVIT 93 (162)
T ss_dssp T-SEEEE-SSSSSSB-
T ss_pred hCCEEEECCCCccccC
Confidence 7888888886666665
No 52
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.83 E-value=0.67 Score=47.62 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=60.4
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|+|+|..+..-++.|...+ ..|+|++.+. ++++.+.+ ..++.++.|+.. .++| ..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g------a~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG------AQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC------CEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 458999999999999999998754 4666776543 34444432 126888888876 4454 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (745)
++.||+.+++ .+.|..++..++..
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~ 93 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARAR 93 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHc
Confidence 8899988853 56888888888764
No 53
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.79 E-value=0.29 Score=54.77 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=57.9
Q ss_pred EEEEccCccHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004558 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (745)
Q Consensus 385 IVI~G~g~~g~~L~~eL~~~~~s~~~~~-iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (745)
|+|+|+|..|..+++.|..... . .|++.+++.+.+++..++. .+.++.++.-|..|.+.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~-----~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP-----FEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC-----E-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCCC-----CCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 7899999999999999986542 3 7999999999888776532 245789999999999998888 889999
Q ss_pred EEEecCC
Q 004558 464 IIVLASD 470 (745)
Q Consensus 464 VIiltdd 470 (745)
||-++..
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9998863
No 54
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.11 Score=57.30 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=72.6
Q ss_pred HHHHhhhhhhh--ccchhHHHHHHHHHHH-HHHHHHhhhhhhcc---------C------------CCHHHHHHHHHHhh
Q 004558 270 KRVAYSVDVCF--SVYPYAKLLALLFATI-FLIIFGGLALYAVS---------D------------SSFAEALWLSWTFV 325 (745)
Q Consensus 270 ~rl~y~ld~~~--s~~~~~~~l~L~~~~l-~liligt~~~~~ie---------~------------~s~~dA~y~~~~tv 325 (745)
++.+|--|-|- -.-.|+..+.++.+.+ +-.++.+++||.+- + .+|..||-|++.|=
T Consensus 45 ~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQ 124 (400)
T KOG3827|consen 45 KRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQ 124 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeee
Confidence 35555544432 1245666565555543 45556666666651 0 47999999999999
Q ss_pred hcCCCCCCcCCc---cChhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhccCcccccccCeEEEEcc
Q 004558 326 ADSGNHADRVGT---GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGW 390 (745)
Q Consensus 326 TTvGygd~~~t~---~gRi~~v~lil~Gi~ifa~lig~It~~i~~~l~~lr~G~~~v~~k~HIVI~G~ 390 (745)
||+|||-.-.|. .+-+..++-.+.|.++=++++|.+...+. +-+++......++|.|||=-
T Consensus 125 tTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKia----rPkKRAeTl~FS~~AVI~~R 188 (400)
T KOG3827|consen 125 TTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIA----RPKKRAETLIFSDHAVIALR 188 (400)
T ss_pred eeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CchhhhheeeeccceEEEee
Confidence 999999863332 33344556668888888888887765433 22332233456788888743
No 55
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.57 E-value=0.37 Score=54.16 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=88.1
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
+.|+|+|.|.+|..++..|...+. ..|.+++++++.++++.... ..++.+++=|+.+.+.|.++ +.+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHH-HhcCC
Confidence 579999999999999999987542 68999999998888775431 23688999999999999887 66669
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCC----CHHHHHHcCCCeeeEEccHHHHHHHHHHHHcC
Q 004558 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD----NEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e----~~~~l~~aGad~Ve~V~s~el~a~lLaq~~~~ 538 (745)
+||.+.+. .-+..-+.+|+..+- +.+--..+.+ ..+.++++|... |-.+=..
T Consensus 71 ~VIn~~p~----~~~~~i~ka~i~~gv-------~yvDts~~~~~~~~~~~~a~~Agit~-------------v~~~G~d 126 (389)
T COG1748 71 LVINAAPP----FVDLTILKACIKTGV-------DYVDTSYYEEPPWKLDEEAKKAGITA-------------VLGCGFD 126 (389)
T ss_pred EEEEeCCc----hhhHHHHHHHHHhCC-------CEEEcccCCchhhhhhHHHHHcCeEE-------------EcccCcC
Confidence 99999965 334444445554432 2222222222 334455666542 2334567
Q ss_pred CcHHHHHHH
Q 004558 539 PGLAQIWED 547 (745)
Q Consensus 539 Pg~~~Vl~~ 547 (745)
||+.+++..
T Consensus 127 PGi~nv~a~ 135 (389)
T COG1748 127 PGITNVLAA 135 (389)
T ss_pred cchHHHHHH
Confidence 888777643
No 56
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.49 E-value=0.33 Score=47.51 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCCC-cC-----CccChhhh-hHHHHhHHHHHHHHHHHH
Q 004558 312 SSFAEALWLSWTFVADSGNHAD-RV-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (745)
Q Consensus 312 ~s~~dA~y~~~~tvTTvGygd~-~~-----t~~gRi~~-v~lil~Gi~ifa~lig~I 361 (745)
.++..|+|+++.++|+.|+++. +. +..+.++. .+.++++++++++++|.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 5799999999999999999997 33 55667766 566677778888888764
No 57
>PRK04972 putative transporter; Provisional
Probab=93.35 E-value=0.073 Score=62.71 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred ceeeccCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
|..+.+.++++|++++|+..+.+++.+++|+|. + ..+.|.++++|+.||+|.+.|+.+++.+.
T Consensus 305 E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~---g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l 367 (558)
T PRK04972 305 EEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRS---Q-IEMPIDDNVVLNKGDVLQVSGDARRVKTI 367 (558)
T ss_pred EEEEEcCcccCCCCHHHhCCccCCeEEEEEecC---C-cccCCCCCCEecCCCEEEEEECHHHHHHH
Confidence 344556789999999999865468999999882 3 34567789999999999999998876543
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.16 E-value=0.23 Score=55.81 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=64.6
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
++|||+|.|.+|..++..|.+. | .+|++.+.. .+.|+++.+.. ..+ +..+.=|+.|.+.|.++ |.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~---~d~~V~iAdRs--~~~~~~i~~~~-----~~~--v~~~~vD~~d~~al~~l-i~~ 68 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN---GDGEVTIADRS--KEKCARIAELI-----GGK--VEALQVDAADVDALVAL-IKD 68 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC---CCceEEEEeCC--HHHHHHHHhhc-----ccc--ceeEEecccChHHHHHH-Hhc
Confidence 5899999999999999999763 4 899999975 57888886521 123 44578899999999998 888
Q ss_pred cceEEEec---Ccchhhhh
Q 004558 723 FDSMSHWK---TRLCILTH 738 (745)
Q Consensus 723 ~DavIilT---d~~ni~~~ 738 (745)
+|+||.+. ...+++-|
T Consensus 69 ~d~VIn~~p~~~~~~i~ka 87 (389)
T COG1748 69 FDLVINAAPPFVDLTILKA 87 (389)
T ss_pred CCEEEEeCCchhhHHHHHH
Confidence 99999988 55555543
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.90 E-value=0.1 Score=61.58 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=50.7
Q ss_pred ceeeccCCccCCCcHHhHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 555 EFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~-----~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
|..+.+.++++|++++|+..+ .+++.+.+|.| +|+. +.|.+|++|+.||+|.+.|+.+++.+.
T Consensus 305 e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R---~g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~ 372 (562)
T TIGR03802 305 KDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKR---DDQP-LPILPETVLQRGDVVTLVGTPQDVDRA 372 (562)
T ss_pred EEEEECCcccCCccHHHHhccccccccCCeEEEEEee---CCcc-ccCCCCCEecCCCEEEEEeCHHHHHHH
Confidence 344456789999999999854 46899999998 3443 478999999999999999999876553
No 60
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.77 E-value=0.33 Score=47.67 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=53.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 646 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 646 ILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
|+|+|+ |.+|..++++|.+. |.+|+.+...+ ++.+. . .+ +.++.||..|.+.+.++ +..+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~R~~--~~~~~--~--------~~--~~~~~~d~~d~~~~~~a-l~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALVRSP--SKAED--S--------PG--VEIIQGDLFDPDSVKAA-LKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEESSG--GGHHH--C--------TT--EEEEESCTTCHHHHHHH-HTTSS
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEecCc--hhccc--c--------cc--cccceeeehhhhhhhhh-hhhcc
Confidence 789998 99999999999764 79999999754 33333 1 23 44689999999988886 66899
Q ss_pred eEEEec
Q 004558 725 SMSHWK 730 (745)
Q Consensus 725 avIilT 730 (745)
+|+.+.
T Consensus 63 ~vi~~~ 68 (183)
T PF13460_consen 63 AVIHAA 68 (183)
T ss_dssp EEEECC
T ss_pred hhhhhh
Confidence 999887
No 61
>PRK03818 putative transporter; Validated
Probab=92.65 E-value=0.12 Score=60.99 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=49.6
Q ss_pred ceeeccCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004558 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (745)
Q Consensus 555 ei~v~~~p~lvG~tf~El~~~-~~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (745)
|..+...++++|++++|+..+ .+++.+.+|+| +| ..+.|.+|++|+.||+|.+.|+.+++.+
T Consensus 292 E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R---~g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~ 354 (552)
T PRK03818 292 ERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNR---AG-VELVASPDLSLQFGDILNLVGRPEAIDA 354 (552)
T ss_pred EEEEEcChhccCCcHHHhcccccCCeEEEEEeE---CC-eecCCCCCCEEecCCEEEEEECHHHHHH
Confidence 334455689999999999865 36899999998 34 3456788999999999999999987544
No 62
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.62 E-value=1.2 Score=49.27 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=62.6
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e---------------------~le~~l~~~~~~~~~~~ 439 (745)
.+.||+|+|.|..|..+++.|...+. ..++|+|.|.- +.+.+.+++..-..+.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 35699999999999999999998753 26788888751 11221111111112345
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004558 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (745)
Q Consensus 440 V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (745)
+..+.++.+ .+.+++. ++++|.||..+|+ .+....+...+++.+
T Consensus 98 i~~~~~~~~-~~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVT-VEELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCC-HHHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 666777665 3445544 7789999999953 555566655666543
No 63
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.53 E-value=0.46 Score=49.53 Aligned_cols=74 Identities=18% Similarity=0.010 Sum_probs=49.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|||+|||+++..=++.|.++ |.+|+||+.+-.+|-.+ +.+. .+ +.++..+.. +..++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVap~i~~el~~-l~~~-------~~--i~~~~r~~~------~~dl~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK---GCYVYILSKKFSKEFLD-LKKY-------GN--LKLIKGNYD------KEFIK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCCCHHHHH-HHhC-------CC--EEEEeCCCC------hHHhC
Confidence 356999999999998777777554 89999999765444333 3321 12 334555443 23357
Q ss_pred CcceEEEec--Ccch
Q 004558 722 TFDSMSHWK--TRLC 734 (745)
Q Consensus 722 ~~DavIilT--d~~n 734 (745)
.++.|++.| .++|
T Consensus 85 g~~LViaATdD~~vN 99 (223)
T PRK05562 85 DKHLIVIATDDEKLN 99 (223)
T ss_pred CCcEEEECCCCHHHH
Confidence 789999999 3455
No 64
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.48 E-value=0.3 Score=50.22 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=58.3
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 646 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 646 ILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
|+|.|+ |..|..+++.|.+ .+.+|+++-.+++.++.+.+.+.| +. ++.+|..|.+.|.++ +..+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~g--------~~--vv~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQALG--------AE--VVEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHTT--------TE--EEES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhccc--------ce--EeecccCCHHHHHHH-HcCCc
Confidence 789998 9999999999987 689999999887677777776532 34 369999999999887 88999
Q ss_pred eEEEecC
Q 004558 725 SMSHWKT 731 (745)
Q Consensus 725 avIilTd 731 (745)
++++++.
T Consensus 67 ~v~~~~~ 73 (233)
T PF05368_consen 67 AVFSVTP 73 (233)
T ss_dssp EEEEESS
T ss_pred eEEeecC
Confidence 9999884
No 65
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.19 E-value=0.37 Score=60.45 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCC-------------eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEc
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGS-------------ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG 707 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-------------~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~G 707 (745)
...+||+|+|.|++|...++.|.+. ++. .|+|.+. +.++++++++ .++++. .+..
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~~~--~v~l 634 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIENAE--AVQL 634 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH------hcCCCc--eEEe
Confidence 4577999999999999999999753 333 3777774 4678888886 455654 3678
Q ss_pred CcCCHhhHhcCCCCCcceEEEec-Ccch
Q 004558 708 NAVIRRHLESLPLETFDSMSHWK-TRLC 734 (745)
Q Consensus 708 D~td~~~L~e~~I~~~DavIilT-d~~n 734 (745)
|.+|.+.|.++ +...|+||+++ ...+
T Consensus 635 Dv~D~e~L~~~-v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 635 DVSDSESLLKY-VSQVDVVISLLPASCH 661 (1042)
T ss_pred ecCCHHHHHHh-hcCCCEEEECCCchhh
Confidence 89999998886 66799999998 4443
No 66
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.82 E-value=1.1 Score=48.52 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=53.6
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
++|+|+|+ |..|.+++++|...+ +.|+.+.++++...... ..++.++.||.++++.|.++ ++.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g------~~V~~l~R~~~~~~~l~--------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG------YQVRCLVRNLRKASFLK--------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CeEEEEEcChHHhhhHh--------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 37899996 667999999998753 67777777765433221 23578899999999999876 5678
Q ss_pred cEEEEecC
Q 004558 462 RAIIVLAS 469 (745)
Q Consensus 462 ~aVIiltd 469 (745)
|+||-+..
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 99888764
No 67
>PRK03818 putative transporter; Validated
Probab=91.80 E-value=0.17 Score=59.50 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=51.5
Q ss_pred cceeeccCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 554 ~ei~v~~~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
.++.+. .++++|+++.|+..+. .++.+.+++| ++ ....|.++++|++||.|++.|+.+++.+.
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 455565 6789999999998764 4789999987 45 46678899999999999999999886554
No 68
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.64 E-value=0.25 Score=47.15 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=50.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..++++|+|.|..+..++..|.+. |. +++|++. +.+|.+.|++ .+....+..+. .+.+. ..+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nR--t~~ra~~l~~------~~~~~~~~~~~-----~~~~~-~~~ 73 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNR--TPERAEALAE------EFGGVNIEAIP-----LEDLE-EAL 73 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEES--SHHHHHHHHH------HHTGCSEEEEE-----GGGHC-HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEEC--CHHHHHHHHH------HcCccccceee-----HHHHH-HHH
Confidence 467999999999999999999875 54 5999996 4789998886 33222222222 12222 226
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.+|..|
T Consensus 74 ~~~DivI~aT 83 (135)
T PF01488_consen 74 QEADIVINAT 83 (135)
T ss_dssp HTESEEEE-S
T ss_pred hhCCeEEEec
Confidence 6799999998
No 69
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.40 E-value=0.48 Score=53.02 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.8
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 646 ILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 646 ILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
|+|+|+|.+|..+++.|.+. ... ++++.+. +.++.+.+.+ .+....+..+..|..|.+.|++. +.++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--~~~~~v~va~r--~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~l~~~-~~~~d 69 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--GPFEEVTVADR--NPEKAERLAE------KLLGDRVEAVQVDVNDPESLAEL-LRGCD 69 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--TCE-EEEEEES--SHHHHHHHHT--------TTTTEEEEE--TTTHHHHHHH-HTTSS
T ss_pred CEEEcCcHHHHHHHHHHhcC--CCCCcEEEEEC--CHHHHHHHHh------hccccceeEEEEecCCHHHHHHH-HhcCC
Confidence 79999999999999999874 233 7888886 4678777775 22333455688999999999998 89999
Q ss_pred eEEEec
Q 004558 725 SMSHWK 730 (745)
Q Consensus 725 avIilT 730 (745)
.||-+.
T Consensus 70 vVin~~ 75 (386)
T PF03435_consen 70 VVINCA 75 (386)
T ss_dssp EEEE-S
T ss_pred EEEECC
Confidence 999877
No 70
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.27 E-value=0.46 Score=47.87 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=54.1
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC---CceEEEEEcCcCCHhhHhc
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM---NIKLVHREGNAVIRRHLES 717 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~---~~~V~~i~GD~td~~~L~e 717 (745)
..++++|+|+ |.+|..+++.|.+ .|.+|++++.+ .++.+.+.+ .+. +.. +...|..+.+.+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~---~g~~V~l~~R~--~~~~~~l~~------~l~~~~~~~--~~~~~~~~~~~~~~ 93 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAR---EGARVVLVGRD--LERAQKAAD------SLRARFGEG--VGAVETSDDAARAA 93 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEcCC--HHHHHHHHH------HHHhhcCCc--EEEeeCCCHHHHHH
Confidence 3468999998 9999999999975 37799999854 577666654 121 222 24567778777665
Q ss_pred CCCCCcceEEEec
Q 004558 718 LPLETFDSMSHWK 730 (745)
Q Consensus 718 ~~I~~~DavIilT 730 (745)
. +.++|.||..|
T Consensus 94 ~-~~~~diVi~at 105 (194)
T cd01078 94 A-IKGADVVFAAG 105 (194)
T ss_pred H-HhcCCEEEECC
Confidence 4 57899888887
No 71
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=90.90 E-value=0.32 Score=54.62 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=45.3
Q ss_pred cCCccCCCcHHhHhhhCC-CeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 004558 560 RWPQLDDLRFEEVVISFP-DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (745)
Q Consensus 560 ~~p~lvG~tf~El~~~~~-~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~ 620 (745)
...+++|+.+++++ +| .+.+.++.| ||+ .++|.++++|++||.+++++.+.+...
T Consensus 421 k~~~~ig~~lr~l~--~p~~~~~~~v~R---d~q-~i~p~g~t~l~~gD~l~v~~~~~d~~~ 476 (574)
T COG3263 421 KDKWCVGAALRNLR--MPKWTRIAAVFR---DGQ-LIHPQGSTRLREGDVLCVIGSERDLRA 476 (574)
T ss_pred cCCcccchhhhhcc--CCccceeeeEEe---cCc-eeccCCCceeecCCEEEEEeccccHHH
Confidence 35688999999987 55 578888888 454 689999999999999999999877544
No 72
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.90 E-value=4 Score=47.65 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC--c-CCccC------hhhhhHHHHhH-HHHHHHH
Q 004558 288 LLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD--R-VGTGP------RIVSVSISSGG-MLIFAMM 357 (745)
Q Consensus 288 ~l~L~~~~l~liligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~--~-~t~~g------Ri~~v~lil~G-i~ifa~l 357 (745)
.++.+++.+++++++++.+...+..++.++++-++.++.|+|-+-- + .+..+ +++.++.|+.| +.+++++
T Consensus 399 ~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~l 478 (499)
T COG0168 399 ALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVL 478 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHH
Confidence 3555566667777777777666655899999999999999988543 1 22233 87777777776 5566665
Q ss_pred HHHH
Q 004558 358 LGLV 361 (745)
Q Consensus 358 ig~I 361 (745)
+...
T Consensus 479 v~~~ 482 (499)
T COG0168 479 VLFT 482 (499)
T ss_pred Hhhh
Confidence 5543
No 73
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=90.75 E-value=0.5 Score=53.46 Aligned_cols=69 Identities=22% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..+++||+|.|..|..+++.|.+. | ..++|++. ..||.+.|++ ++. |.+...+.|.+. +
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNR--T~erA~~La~------~~~--------~~~~~l~el~~~-l 236 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANR--TLERAEELAK------KLG--------AEAVALEELLEA-L 236 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcC--CHHHHHHHHH------HhC--------CeeecHHHHHHh-h
Confidence 456999999999999999999864 5 78888885 5799999997 332 666777777766 8
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.||..|
T Consensus 237 ~~~DvVissT 246 (414)
T COG0373 237 AEADVVISST 246 (414)
T ss_pred hhCCEEEEec
Confidence 9999999999
No 74
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.65 E-value=0.9 Score=46.45 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=62.7
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
.+++|.|+|+.|..+++.|...+ +.|+++|.+++.++...+.+ +..++. . +.+ ...++|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G------~~Vvv~D~~~~~~~~~~~~~-------g~~~v~--~---~~l---~~~~~D 87 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG------AKLIVADINEEAVARAAELF-------GATVVA--P---EEI---YSVDAD 87 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHc-------CCEEEc--c---hhh---ccccCC
Confidence 57999999999999999998754 67889999988776654321 222221 1 222 223688
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEE-ecC----CCCHHHHHHcCCC
Q 004558 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVE-MSD----LDNEPLVKLVGGE 517 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIAr-v~d----~e~~~~l~~aGad 517 (745)
.++-++-. ++...-.++++.. ++|++ .++ ++..+.|+..|+.
T Consensus 88 v~vp~A~~---------~~I~~~~~~~l~~----~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 88 VFAPCALG---------GVINDDTIPQLKA----KAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred EEEecccc---------cccCHHHHHHcCC----CEEEECCcCccCCHhHHHHHHHCCCE
Confidence 88866521 2333334455542 34444 444 4666778887864
No 75
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.58 E-value=0.92 Score=50.24 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=56.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCch-------------------HHHHHhhcCCCCcCCCCCce
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------EREKKLTDGGLDISGLMNIK 701 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~-------------------er~~~l~e~g~~~~~L~~~~ 701 (745)
...+|+|+|.|..|..+++.|.+. |. +++|++.+..+ -+.+.+++. + ...-+++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~-l-~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH-L-RKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH-H-HHHCCCcE
Confidence 356899999999999999999864 75 89999975311 011111110 0 00125677
Q ss_pred EEEEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 702 LVHREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 702 V~~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
+..+.+|.+. +.+++. ++++|.||..||..
T Consensus 98 i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~~ 127 (338)
T PRK12475 98 IVPVVTDVTV-EELEEL-VKEVDLIIDATDNF 127 (338)
T ss_pred EEEEeccCCH-HHHHHH-hcCCCEEEEcCCCH
Confidence 7777788764 345554 78999999999643
No 76
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.41 E-value=3.6 Score=42.98 Aligned_cols=84 Identities=12% Similarity=0.014 Sum_probs=56.9
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|+|+|+++.+=++.|...+ ..|.|+ ..--++++.... ...+.++..+. .+++| +.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g------A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g 85 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG------CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KD 85 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CC
Confidence 459999999999988888888754 344444 433334554432 23466676554 45555 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (745)
|+.||+.|+| .+.|-.++-.++..
T Consensus 86 ~~LViaATdD------~~vN~~I~~~a~~~ 109 (223)
T PRK05562 86 KHLIVIATDD------EKLNNKIRKHCDRL 109 (223)
T ss_pred CcEEEECCCC------HHHHHHHHHHHHHc
Confidence 8999999954 67888888888775
No 77
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.39 E-value=0.23 Score=45.13 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=41.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|+|+|+|+.+..-++.|.+ .|.+|++++... +-++ + .++ +..-. ++ ..++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~---~gA~v~vis~~~--~~~~---~---------~i~--~~~~~------~~-~~l~ 59 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE---AGAKVTVISPEI--EFSE---G---------LIQ--LIRRE------FE-EDLD 59 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC---CTBEEEEEESSE--HHHH---T---------SCE--EEESS-------G-GGCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEECCch--hhhh---h---------HHH--HHhhh------HH-HHHh
Confidence 35799999999999988888854 599999999752 1122 1 122 12211 22 4488
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
.+|.|++.|
T Consensus 60 ~~~lV~~at 68 (103)
T PF13241_consen 60 GADLVFAAT 68 (103)
T ss_dssp TESEEEE-S
T ss_pred hheEEEecC
Confidence 899999999
No 78
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.87 E-value=1.8 Score=54.55 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=71.1
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccC--------CCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHH
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD 452 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~--------~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~ 452 (745)
...+|+|+|.|..|...++.|....... +....|+++|.+++..+.+.+.+ .++..+..|.+|.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHH
Confidence 3569999999999999999997532110 11235888999988877665431 245678889999999
Q ss_pred HhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEe
Q 004558 453 LKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM 502 (745)
Q Consensus 453 L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv 502 (745)
|.++ ++++|+||++++. ..+..++.++-+.+ +|++.+-
T Consensus 642 L~~~-v~~~DaVIsalP~-------~~H~~VAkaAieaG----kHvv~ek 679 (1042)
T PLN02819 642 LLKY-VSQVDVVISLLPA-------SCHAVVAKACIELK----KHLVTAS 679 (1042)
T ss_pred HHHh-hcCCCEEEECCCc-------hhhHHHHHHHHHcC----CCEEECc
Confidence 9876 5569999999964 23444454444443 3566553
No 79
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.79 E-value=0.48 Score=46.35 Aligned_cols=77 Identities=22% Similarity=0.158 Sum_probs=48.8
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
||.|||+|.-|..++..|.. .|.+|++...+ ++..+.+.+.+.....+++..+ ..+..--..|++. ++.+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~---~g~~V~l~~~~--~~~~~~i~~~~~n~~~~~~~~l---~~~i~~t~dl~~a-~~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD---NGHEVTLWGRD--EEQIEEINETRQNPKYLPGIKL---PENIKATTDLEEA-LEDAD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH---CTEEEEEETSC--HHHHHHHHHHTSETTTSTTSBE---ETTEEEESSHHHH-HTT-S
T ss_pred CEEEECcCHHHHHHHHHHHH---cCCEEEEEecc--HHHHHHHHHhCCCCCCCCCccc---CcccccccCHHHH-hCccc
Confidence 68999999999999999986 48999999964 5777777764322223444322 1111111233332 57889
Q ss_pred eEEEec
Q 004558 725 SMSHWK 730 (745)
Q Consensus 725 avIilT 730 (745)
.+|+.+
T Consensus 72 ~Iiiav 77 (157)
T PF01210_consen 72 IIIIAV 77 (157)
T ss_dssp EEEE-S
T ss_pred EEEecc
Confidence 888877
No 80
>PRK01581 speE spermidine synthase; Validated
Probab=89.76 E-value=1.3 Score=49.33 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=49.4
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc-hHHHHHhhcC-CCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~-~er~~~l~e~-g~~~~~L~~~~V~~i~GD~td~~~L~e~ 718 (745)
..+++||++|+|.- ..+ +++.++ .+..+|+++|.+|. -+.|+..... .+....+.+-.+.+++||+. +.|++.
T Consensus 149 ~~PkrVLIIGgGdG-~tl-relLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDG-LAL-REVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHH-HHH-HHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhc
Confidence 34679999998844 444 444444 34578999998642 1223321000 01112344556667899998 455553
Q ss_pred CCCCcceEEEec
Q 004558 719 PLETFDSMSHWK 730 (745)
Q Consensus 719 ~I~~~DavIilT 730 (745)
-++||.|++=.
T Consensus 224 -~~~YDVIIvDl 234 (374)
T PRK01581 224 -SSLYDVIIIDF 234 (374)
T ss_pred -CCCccEEEEcC
Confidence 36899999765
No 81
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.71 E-value=0.7 Score=45.78 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=41.2
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
-.+++|||||..|..+++.|+..+ ..|++.|.||-..-++.. .+.++ . .++++ +.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~G------a~V~V~e~DPi~alqA~~------dGf~v--~--------~~~~a-~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLG------ARVTVTEIDPIRALQAAM------DGFEV--M--------TLEEA-LRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHHHHHHHHH------TT-EE--E---------HHHH-TTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhCC------CEEEEEECChHHHHHhhh------cCcEe--c--------CHHHH-HhhC
Confidence 458999999999999999999765 689999999965333322 12222 1 24443 5689
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.+|..|..
T Consensus 80 di~vtaTG~ 88 (162)
T PF00670_consen 80 DIFVTATGN 88 (162)
T ss_dssp SEEEE-SSS
T ss_pred CEEEECCCC
Confidence 988888865
No 82
>PRK00536 speE spermidine synthase; Provisional
Probab=89.52 E-value=1.2 Score=47.66 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=46.1
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC--CCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG--LDISGLMNIKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g--~~~~~L~~~~V~~i~GD~td~~~L~e~ 718 (745)
..++||||+|||+-| .++|+-++ + .+|+++|-+ ++-.+...+.= +. ..++|-.+.++. .+++.
T Consensus 71 ~~pk~VLIiGGGDGg--~~REvLkh--~-~~v~mVeID--~~Vv~~~k~~lP~~~-~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLE--LAHQLFKY--D-THVDFVQAD--EKILDSFISFFPHFH-EVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCchH--HHHHHHCc--C-CeeEEEECC--HHHHHHHHHHCHHHH-HhhcCCCEEEee-------hhhhc
Confidence 457999999999885 56777666 2 499999975 33332221100 00 135565565554 24455
Q ss_pred CCCCcceEEEe
Q 004558 719 PLETFDSMSHW 729 (745)
Q Consensus 719 ~I~~~DavIil 729 (745)
.-++||.||+=
T Consensus 136 ~~~~fDVIIvD 146 (262)
T PRK00536 136 DIKKYDLIICL 146 (262)
T ss_pred cCCcCCEEEEc
Confidence 55789999986
No 83
>PRK04972 putative transporter; Provisional
Probab=88.81 E-value=0.73 Score=54.44 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred cCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 564 lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
+.||+++|+..+. .++.+.+|+| +++ ...|.++++|++||+|++.|+.++..+.
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998764 4789999987 455 5778999999999999999999876543
No 84
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.78 E-value=3.1 Score=42.72 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=50.4
Q ss_pred EEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChH--HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKE--EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 385 IVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e--~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
|+|+|+ |..|..+++.|...+ +.|.++-+++. ..+.+ + ..++.++.||..+++.|.++ ++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~------~~V~~l~R~~~~~~~~~l-~-------~~g~~vv~~d~~~~~~l~~a-l~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG------FSVRALVRDPSSDRAQQL-Q-------ALGAEVVEADYDDPESLVAA-LKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------GCEEEEESSSHHHHHHHH-H-------HTTTEEEES-TT-HHHHHHH-HTTC
T ss_pred CEEECCccHHHHHHHHHHHhCC------CCcEEEEeccchhhhhhh-h-------cccceEeecccCCHHHHHHH-HcCC
Confidence 678886 888999999999843 45555555542 22222 2 23567889999999999876 7899
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
++|+++++.
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999999974
No 85
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.65 E-value=1.2 Score=48.40 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=52.6
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~ 723 (745)
+|+|.|+ |-+|..+++.|.+ .|.+|+.+...+ ++...+.+ .++ .++.||.+|.+.|+++ ++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~---~g~~V~~l~R~~--~~~~~l~~--------~~v--~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALD---EGYQVRCLVRNL--RKASFLKE--------WGA--ELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHH---CCCeEEEEEcCh--HHhhhHhh--------cCC--EEEECCCCCHHHHHHH-HCCC
Confidence 6999997 9999999999975 488999998643 33332222 133 4588999999999875 6678
Q ss_pred ceEEEec
Q 004558 724 DSMSHWK 730 (745)
Q Consensus 724 DavIilT 730 (745)
|+|+-+.
T Consensus 66 d~Vi~~~ 72 (317)
T CHL00194 66 TAIIDAS 72 (317)
T ss_pred CEEEECC
Confidence 9999875
No 86
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.60 E-value=0.99 Score=46.64 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|+|+|+|.++..=++.|.+ .|.+|++++....+|-.....++ .+.++. +.-+.+. +.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~---~ga~v~Vvs~~~~~el~~~~~~~----------~i~~~~-~~~~~~~-----~~ 71 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLK---AGADVTVVSPEFEPELKALIEEG----------KIKWIE-REFDAED-----LD 71 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---cCCEEEEEcCCccHHHHHHHHhc----------Ccchhh-cccChhh-----hc
Confidence 34699999999999987877765 59999999976422222222221 122233 3333333 34
Q ss_pred CcceEEEec--Ccch
Q 004558 722 TFDSMSHWK--TRLC 734 (745)
Q Consensus 722 ~~DavIilT--d~~n 734 (745)
.++.+++.| .++|
T Consensus 72 ~~~lviaAt~d~~ln 86 (210)
T COG1648 72 DAFLVIAATDDEELN 86 (210)
T ss_pred CceEEEEeCCCHHHH
Confidence 499999999 3454
No 87
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.58 E-value=1.7 Score=45.78 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=55.0
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
.+++|+|.+. .|..++++|.+.+ +.|+++.++++..+...+.......+.++.++.+|.++++.+++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKG------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4789999754 6999999998643 678888888776655433221100124688899999999987651
Q ss_pred CcccccEEEEecCC
Q 004558 457 SVSKARAIIVLASD 470 (745)
Q Consensus 457 gI~~A~aVIiltdd 470 (745)
.....+.+|.++..
T Consensus 78 ~~~~id~vv~~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVNNAGY 91 (280)
T ss_pred hcCCeeEEEECCcc
Confidence 12345888877654
No 88
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.21 E-value=1.8 Score=47.97 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=55.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCch-------------------HHHHHhhcCCCCcCCC-CCc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------EREKKLTDGGLDISGL-MNI 700 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~-------------------er~~~l~e~g~~~~~L-~~~ 700 (745)
...+|+|+|.|..|..+++.|.+. |. ++++++.+.-+ -+.+.+++ - ..++ +++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~-~--l~~inp~v 96 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK-R--LEEINSDV 96 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH-H--HHHHCCCc
Confidence 356899999999999999999764 66 89999975211 01111111 0 0011 456
Q ss_pred eEEEEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 701 KLVHREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 701 ~V~~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
.+..+..+.+... +.+. ++++|.||..+|..
T Consensus 97 ~v~~~~~~~~~~~-~~~~-~~~~DlVid~~Dn~ 127 (339)
T PRK07688 97 RVEAIVQDVTAEE-LEEL-VTGVDLIIDATDNF 127 (339)
T ss_pred EEEEEeccCCHHH-HHHH-HcCCCEEEEcCCCH
Confidence 6666777765543 4444 78899999999644
No 89
>PRK09186 flagellin modification protein A; Provisional
Probab=88.19 E-value=1.8 Score=44.75 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=54.0
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (745)
.+.++|.|.+. .|..++++|.+.+ ..|+++.++++..+...+++.....+..+.++.+|.++++.++++- +
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG------GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 35788999864 6999999998654 5788888887776655444321112334667789999998876641 1
Q ss_pred ----ccccEEEEec
Q 004558 459 ----SKARAIIVLA 468 (745)
Q Consensus 459 ----~~A~aVIilt 468 (745)
..-|.+|-++
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 1257777665
No 90
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.12 E-value=1 Score=49.14 Aligned_cols=78 Identities=22% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
...+|+|+|.|.+|..+++.|... .+.+|++++.+ .+|.+.+++ ++.. .+ .+.+.+.+. +.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r~--~~ra~~la~------~~g~-~~-------~~~~~~~~~-l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANRT--YERAEELAK------ELGG-NA-------VPLDELLEL-LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCC--HHHHHHHHH------HcCC-eE-------EeHHHHHHH-Hh
Confidence 456899999999999999999752 34789999864 577777775 2322 11 122334443 67
Q ss_pred CcceEEEec--Ccc-hhhhh
Q 004558 722 TFDSMSHWK--TRL-CILTH 738 (745)
Q Consensus 722 ~~DavIilT--d~~-ni~~~ 738 (745)
++|.||..| ++. +++..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~ 257 (311)
T cd05213 238 EADVVISATGAPHYAKIVER 257 (311)
T ss_pred cCCEEEECCCCCchHHHHHH
Confidence 899999999 444 44444
No 91
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.02 E-value=2.1 Score=43.15 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=54.8
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|+|+ |..|..+++.|...+ ..|+++.++++..+...+.+.. ..+..+...+..+.+++.++ +.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g------~~V~l~~R~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG------ARVVLVGRDLERAQKAADSLRA---RFGEGVGAVETSDDAARAAA-IKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh---hcCCcEEEeeCCCHHHHHHH-Hhc
Confidence 468999997 888999999987643 5788889988777665543311 11233556677787777643 468
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
||.||..+..
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988887754
No 92
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.79 E-value=1.8 Score=45.18 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=52.9
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCC-HHHHhccCcc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~-~e~L~rAgI~ 459 (745)
.+.|+|+|. |..|..++++|...+ +.|++..++++..+.... .+.++.++.||.++ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g------~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG------FAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC------CEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 468999996 668999999998643 567766676655443221 12358899999998 4566554224
Q ss_pred cccEEEEecCC
Q 004558 460 KARAIIVLASD 470 (745)
Q Consensus 460 ~A~aVIiltdd 470 (745)
.+|.||..+..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78999987653
No 93
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.73 E-value=1.7 Score=51.29 Aligned_cols=83 Identities=13% Similarity=-0.031 Sum_probs=56.3
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhc----CCCC-cCCCCCceEEEEEcCcCCHhhH
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD----GGLD-ISGLMNIKLVHREGNAVIRRHL 715 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e----~g~~-~~~L~~~~V~~i~GD~td~~~L 715 (745)
..+.|+|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+ .+++ ........+.++.||.+|.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk---~G~~Vval~Rn--~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLK---LGFRVRAGVRS--AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 4568999998 7999999999975 48999988754 455444332 0000 0000111245689999999998
Q ss_pred hcCCCCCcceEEEec
Q 004558 716 ESLPLETFDSMSHWK 730 (745)
Q Consensus 716 ~e~~I~~~DavIilT 730 (745)
+++ +...|+||...
T Consensus 154 ~~a-LggiDiVVn~A 167 (576)
T PLN03209 154 GPA-LGNASVVICCI 167 (576)
T ss_pred HHH-hcCCCEEEEcc
Confidence 774 67889988876
No 94
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.69 E-value=1.8 Score=46.25 Aligned_cols=83 Identities=22% Similarity=0.152 Sum_probs=61.9
Q ss_pred ccCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 381 ~k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
...++||.|+.. .|..++++|...+ +.++|+.+++++++++..++.... +-.+.++.-|.++++.+++.--+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g------~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG------YNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHH
Confidence 356999999976 6899999998754 889999999999988877654322 45678899999999988885432
Q ss_pred ------cccEEEEecCC
Q 004558 460 ------KARAIIVLASD 470 (745)
Q Consensus 460 ------~A~aVIiltdd 470 (745)
.-|.+|-.+.-
T Consensus 78 l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 78 LKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHhcCCcccEEEECCCc
Confidence 34555554443
No 95
>PLN02780 ketoreductase/ oxidoreductase
Probab=87.60 E-value=5.9 Score=43.25 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=41.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCC
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI 449 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~ 449 (745)
...++|.|++. .|..++++|...+ ..|++++++++.+++..+++...+.+.++.++..|.++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG------LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 45788889876 6889999998643 57888999988877665443211112345666666653
No 96
>PLN02366 spermidine synthase
Probab=87.56 E-value=1.7 Score=47.45 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc-hHHHHH-hhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~-~er~~~-l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
.+++||++|+|.-+ +++++.++ .+..+|+++|.++. -+.+++ +.+. ...+++-.+.+++||+.. .|++..
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~---~~~~~dpRv~vi~~Da~~--~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL---AVGFDDPRVNLHIGDGVE--FLKNAP 162 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh---ccccCCCceEEEEChHHH--HHhhcc
Confidence 47899999999854 45666555 33468999997642 122333 2211 013455566778999854 455443
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
=+.||.||+=.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 35799999854
No 97
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.18 E-value=2 Score=40.94 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=53.4
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
...+++|+|.|..+..++..|...+- ..|.++.++.++.+.+.+.+ .+..+.++.- +++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~-----~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-----KEITIVNRTPERAEALAEEF----GGVNIEAIPL-----EDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEESSHHHHHHHHHHH----TGCSEEEEEG-----GGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEECCHHHHHHHHHHc----CccccceeeH-----HHHH-HHHhh
Confidence 46799999999999999999987642 46889999999888876654 2233443322 2333 23668
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
||.||..|+.
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999999865
No 98
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.08 E-value=1.6 Score=48.83 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=51.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.+.+++|+|.|.+|..+++.+.+. |.+|++++.+ .+|.+.+.+ .+.. . +..+..+.+.|.+. +.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~--~~~~~~l~~------~~g~-~---v~~~~~~~~~l~~~-l~ 229 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL---GATVTILDIN--IDRLRQLDA------EFGG-R---IHTRYSNAYEIEDA-VK 229 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECC--HHHHHHHHH------hcCc-e---eEeccCCHHHHHHH-Hc
Confidence 356799999999999999999864 7889999864 467666653 1211 1 12344556666665 77
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
++|.+|..+
T Consensus 230 ~aDvVI~a~ 238 (370)
T TIGR00518 230 RADLLIGAV 238 (370)
T ss_pred cCCEEEEcc
Confidence 899998875
No 99
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.08 E-value=6.8 Score=43.43 Aligned_cols=98 Identities=18% Similarity=0.086 Sum_probs=59.7
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHH---------------------HHHHHHhhhcccCCcc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---------------------MEMDIAKLEFDFMGTS 439 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~---------------------le~~l~~~~~~~~~~~ 439 (745)
.+.+|+|+|.|..|..+++.|...+- ..++++|.|.-+ .+.+.+++..-....+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 46799999999999999999998753 367888887411 1111111100001234
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004558 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (745)
Q Consensus 440 V~~i~Gd~t~~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (745)
+..+.++.+. +.+... ++++|.||.++|+ .+......-.+++.+
T Consensus 98 v~~~~~~~~~-~~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 98 VEAIVQDVTA-EELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEeccCCH-HHHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 5666666544 333333 6789999999854 455555555555543
No 100
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=86.98 E-value=3.9 Score=42.29 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=58.8
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
...++|+|.|+.+..=++.|...+. ++.|+.++-.+++.....+ ..+..+. +..+.+.+.. |
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga-----~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~-----~ 73 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA-----DVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD-----A 73 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----c
Confidence 4589999999999988888887652 4555555544666666543 2344555 5555666554 8
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (745)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (745)
..+|+.|+| .+.|-.+.-.++..+
T Consensus 74 ~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 74 FLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred eEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 999999964 567777777787754
No 101
>PRK04148 hypothetical protein; Provisional
Probab=86.96 E-value=1.3 Score=42.56 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=53.1
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
.+++++|.| .|..++..|.+.+ +.|+.+|.+++.++.+.+ ..+.++.+|..+++. +- -+.|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G------~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a~ 79 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESG------FDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNAK 79 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCC------CEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcCC
Confidence 689999999 7889999998643 799999999998877643 346788899887643 21 23788
Q ss_pred EEEEecC
Q 004558 463 AIIVLAS 469 (745)
Q Consensus 463 aVIiltd 469 (745)
.|...-.
T Consensus 80 liysirp 86 (134)
T PRK04148 80 LIYSIRP 86 (134)
T ss_pred EEEEeCC
Confidence 8888775
No 102
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.94 E-value=2.2 Score=49.26 Aligned_cols=74 Identities=15% Similarity=-0.056 Sum_probs=48.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++|||+|||+++..=++.|.++ |.+|+||+.+-.+|-.+ +.+. .+ +..+..+... + .++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~---ga~v~visp~~~~~~~~-l~~~-------~~--i~~~~~~~~~-~-----dl~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA---GARLTVNALAFIPQFTA-WADA-------GM--LTLVEGPFDE-S-----LLD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHH-HHhC-------CC--EEEEeCCCCh-H-----HhC
Confidence 457999999999998777777554 89999999764444333 2221 12 3345555532 2 356
Q ss_pred CcceEEEec--Ccch
Q 004558 722 TFDSMSHWK--TRLC 734 (745)
Q Consensus 722 ~~DavIilT--d~~n 734 (745)
.++.|++.| .++|
T Consensus 72 ~~~lv~~at~d~~~n 86 (457)
T PRK10637 72 TCWLAIAATDDDAVN 86 (457)
T ss_pred CCEEEEECCCCHHHh
Confidence 789999998 3455
No 103
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.80 E-value=1 Score=43.12 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=51.0
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 646 ILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~-~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
|+|+|.|.+|..++..|.+ .|.+|+++... + +.+.+.+.|+....-. +..+ .......+. .+..+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~---~g~~V~l~~r~--~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---AGHDVTLVSRS--P-RLEAIKEQGLTITGPDGDETV-QPPIVISAP----SADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---TTCEEEEEESH--H-HHHHHHHHCEEEEETTEEEEE-EEEEEESSH----GHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH---CCCceEEEEcc--c-cHHhhhheeEEEEecccceec-ccccccCcc----hhccCCCc
Confidence 7899999999999999976 48999999963 3 5555665453211111 1111 111112222 44578899
Q ss_pred eEEEec---Ccchhhhh
Q 004558 725 SMSHWK---TRLCILTH 738 (745)
Q Consensus 725 avIilT---d~~ni~~~ 738 (745)
.+++.+ +-.+++..
T Consensus 70 ~viv~vKa~~~~~~l~~ 86 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQS 86 (151)
T ss_dssp EEEE-SSGGGHHHHHHH
T ss_pred EEEEEecccchHHHHHH
Confidence 999998 55555554
No 104
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.74 E-value=1.4 Score=45.79 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=54.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C-
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 719 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~- 719 (745)
++++|.|+ |.+|..+++.|.+ .|..|.+++.. .+..+.+.+ .+.+..+.++++|.+|.+.+++. +
T Consensus 2 k~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA---EGWRVGAYDIN--EAGLAALAA------ELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 57999998 5689999999975 48899998854 455555543 22333456789999998877652 1
Q ss_pred ----CCCcceEEEec
Q 004558 720 ----LETFDSMSHWK 730 (745)
Q Consensus 720 ----I~~~DavIilT 730 (745)
....|.+|..+
T Consensus 71 ~~~~~~~id~vi~~a 85 (260)
T PRK08267 71 AAATGGRLDVLFNNA 85 (260)
T ss_pred HHHcCCCCCEEEECC
Confidence 24568888766
No 105
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=86.29 E-value=2.3 Score=44.21 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=65.5
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh----------HHHHHHHHhhhcccCCccEE-EEEeCCCC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVI-CRSGSPLI 449 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~----------e~le~~l~~~~~~~~~~~V~-~i~Gd~t~ 449 (745)
...+++|.|+|++|..+++.|.+.+ ..+|.++|.+. +.++...+.. .+. +-.++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-----~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-------~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-----GKVLAVSDPDGYIYDPGITTEELINYAVALG-------GSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEEcCCCcEECCCCCHHHHHHHHHhhC-------CccccCcccccC
Confidence 3569999999999999999998753 36888889887 6555433211 111 11234444
Q ss_pred HHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcC
Q 004558 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVG 515 (745)
Q Consensus 450 ~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d----~e~~~~l~~aG 515 (745)
.+.+.. + +||.+|-++.. |+...-.++++. +++|++.-| ++..+.|+.-|
T Consensus 90 ~~~l~~--~-~~DVlipaA~~---------~~i~~~~a~~l~----a~~V~e~AN~p~t~~a~~~L~~~G 143 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG---------NVIDLENAKKLK----AKVVAEGANNPTTDEALRILHERG 143 (217)
T ss_pred ccccee--c-cccEEeecccc---------CccChhhHhhcC----ccEEEeCCCCCCCHHHHHHHHHCC
Confidence 455553 3 79999988843 223333344442 457776554 34455667677
No 106
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.09 E-value=1.4 Score=37.72 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
||+|+|+|.+|..+|..|.+. |.+|++|+..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~---g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL---GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh---CcEEEEEeccc
Confidence 689999999999999999875 89999999753
No 107
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.95 E-value=2.7 Score=43.93 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+ ..|..++++|.+.+ ..|++++++++..++..++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAG------ARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 3578888874 46999999998754 67888899887666654432 345788999999998876641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577766553
No 108
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.87 E-value=2.9 Score=42.65 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=55.5
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
...++|.|. |..|..++++|...+ ..|++++++++..+...+++.. ..++.++.+|.++.+.++++-
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG------YKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC------CEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 467899987 557999999998643 5688888888766555443311 145788999999998876531
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....+.+|-.+..
T Consensus 77 ~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 77 VAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1367888876643
No 109
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.81 E-value=2.9 Score=42.98 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=55.2
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
+.++|.|.+. .|..++++|.+.+ ..|++++++++..+....+......+.++.++.+|.++++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG------RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688998765 6889999998643 578888888876665543321111234688899999999877653
Q ss_pred -CcccccEEEEecC
Q 004558 457 -SVSKARAIIVLAS 469 (745)
Q Consensus 457 -gI~~A~aVIiltd 469 (745)
.....|.+|..+.
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1235677777664
No 110
>PLN02823 spermine synthase
Probab=85.76 E-value=3.2 Score=46.00 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=49.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC-CCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~-g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.+++|||+|+|.-+ +++++.++ .+..+++++|.+| +-.+...+. +.....+++-.+.++.||+. +.|++. -
T Consensus 103 ~pk~VLiiGgG~G~--~~re~l~~-~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~-~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGS--TAREVLRH-KTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKR-D 174 (336)
T ss_pred CCCEEEEECCCchH--HHHHHHhC-CCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhH--HHHhhC-C
Confidence 56899999998543 34444443 2346899999864 333332221 11112345566777899987 466543 4
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
++||.|++=.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 7899999854
No 111
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.69 E-value=3.9 Score=37.07 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=49.6
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
..+++|+|.|+.+.+=++.|...+ ..|.++..+.+..+ + .+.+. .... + ..++.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g------A~v~vis~~~~~~~----~--------~i~~~-~~~~-----~-~~l~~~ 61 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG------AKVTVISPEIEFSE----G--------LIQLI-RREF-----E-EDLDGA 61 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT------BEEEEEESSEHHHH----T--------SCEEE-ESS------G-GGCTTE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC------CEEEEECCchhhhh----h--------HHHHH-hhhH-----H-HHHhhh
Confidence 568999999999999999998654 45666655542222 1 12222 2222 2 337779
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (745)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~ 491 (745)
+.|++.+++ .+.|-.++..+|+.+
T Consensus 62 ~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 62 DLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp SEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred eEEEecCCC------HHHHHHHHHHHhhCC
Confidence 999998853 677777777777753
No 112
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.59 E-value=1.7 Score=49.52 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=48.4
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHH---HHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE---KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~---~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
.++++|+|.|+.|..+++.|.+ .|.+|++++..+.+... +++... ++. .+.+|..+. .
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~---~G~~V~~~d~~~~~~~~~~~~~l~~~--------~~~--~~~~~~~~~------~ 65 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK---LGAKVILTDEKEEDQLKEALEELGEL--------GIE--LVLGEYPEE------F 65 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCchHHHHHHHHHHHhc--------CCE--EEeCCcchh------H
Confidence 4789999999999999999976 49999999975322221 222221 233 466887762 3
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
.+.+|.||..+
T Consensus 66 ~~~~d~vv~~~ 76 (450)
T PRK14106 66 LEGVDLVVVSP 76 (450)
T ss_pred hhcCCEEEECC
Confidence 56789999877
No 113
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.44 E-value=6.6 Score=41.98 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=46.4
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCC----CCHHHHhccCc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSP----LILADLKKVSV 458 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~----t~~e~L~rAgI 458 (745)
++|.|+|.|..|..++..|...+ +.|.+++++++..+...+. +. .+. .|+. ....++.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~~-g~-----~~~--~~~~~~~~~~~~~~~~--~ 64 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG------HDVTLVARRGAHLDALNEN-GL-----RLE--DGEITVPVLAADDPAE--L 64 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CeEEEEECChHHHHHHHHc-CC-----ccc--CCceeecccCCCChhH--c
Confidence 37999999999999999998653 6899999877776654331 11 110 1211 11112222 3
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
+.+|.+|+++..
T Consensus 65 ~~~d~vila~k~ 76 (304)
T PRK06522 65 GPQDLVILAVKA 76 (304)
T ss_pred CCCCEEEEeccc
Confidence 789999999853
No 114
>PRK06194 hypothetical protein; Provisional
Probab=85.37 E-value=2.8 Score=44.30 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=56.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (745)
++++|.|++. .|..++++|...+ ..|++++++.+..+...++... .+.++.++.+|.++.+.++++--
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALG------MKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999765 6899999998643 6788889887666555443211 13467889999999998877521
Q ss_pred ---ccccEEEEecCC
Q 004558 459 ---SKARAIIVLASD 470 (745)
Q Consensus 459 ---~~A~aVIiltdd 470 (745)
...|.+|-++..
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 235888887754
No 115
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.35 E-value=3.1 Score=49.22 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=58.1
Q ss_pred ccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-cc------CCccEEEEEeCCCCHHH
Q 004558 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-DF------MGTSVICRSGSPLILAD 452 (745)
Q Consensus 381 ~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~-~~------~~~~V~~i~Gd~t~~e~ 452 (745)
..+.++|.|+ |..|..++++|...+ +.|+++.++.+..+...+.+.. .. ...++.++.||.++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3457889987 557999999998653 6788888887766554332110 00 01247899999999999
Q ss_pred HhccCcccccEEEEecCC
Q 004558 453 LKKVSVSKARAIIVLASD 470 (745)
Q Consensus 453 L~rAgI~~A~aVIiltdd 470 (745)
++++ +..+|.||.++..
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8764 5678998887754
No 116
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=85.25 E-value=2.2 Score=45.35 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=50.4
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC-
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET- 722 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~- 722 (745)
+|+|.|+ |-+|..++++|.+. ..+.+|+.++......+.+.+.+. ...++ +..+.||.+|.+.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~Dl~~~~~~~~~-~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADL----EDNPR--YRFVKGDIGDRELVSRL-FTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhh----ccCCC--cEEEEcCCcCHHHHHHH-Hhhc
Confidence 5899998 89999999999653 123678887642211122222210 01123 34578999999988775 444
Q ss_pred -cceEEEec
Q 004558 723 -FDSMSHWK 730 (745)
Q Consensus 723 -~DavIilT 730 (745)
.|.||-++
T Consensus 73 ~~d~vi~~a 81 (317)
T TIGR01181 73 QPDAVVHFA 81 (317)
T ss_pred CCCEEEEcc
Confidence 89999887
No 117
>PRK08267 short chain dehydrogenase; Provisional
Probab=85.02 E-value=3.1 Score=43.22 Aligned_cols=78 Identities=12% Similarity=-0.045 Sum_probs=56.6
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (745)
++++|.|++. .|..++++|...+ ..|++++++++.+++..... .+.++.++.+|.++.+.++++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG------WRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4689999865 5889999998643 67888898887776654432 234688999999999988764 22
Q ss_pred ----ccccEEEEecCC
Q 004558 459 ----SKARAIIVLASD 470 (745)
Q Consensus 459 ----~~A~aVIiltdd 470 (745)
.+-|.+|-++..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234888877654
No 118
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=84.89 E-value=3.6 Score=45.19 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=57.3
Q ss_pred cccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 380 ~~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
...++|+|.|. |-.|..++++|...+ ..|++++++++..+....... .+.++.++.+|..+.+.++++ +
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG------YTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-H
Confidence 35678999996 457999999998753 567777766654443332211 124588899999999988776 4
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
++.|.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 568999888865
No 119
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.72 E-value=4.3 Score=44.31 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=65.1
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
...+|+|+|.|..|..+++.|...+ ...|++++++++..+.+.+++ +. .++ +.+++.++ +.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-----~~~V~v~~r~~~ra~~la~~~-----g~--~~~-----~~~~~~~~-l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-----VAEITIANRTYERAEELAKEL-----GG--NAV-----PLDELLEL-LNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHc-----CC--eEE-----eHHHHHHH-Hhc
Confidence 3578999999999999999987632 357889999988776665442 11 111 23445544 678
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (745)
Q Consensus 461 A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (745)
||.||.++.... ..++...+...... +..+++-+..|.+.+
T Consensus 239 aDvVi~at~~~~-----~~~~~~~~~~~~~~---~~~~viDlavPrdi~ 279 (311)
T cd05213 239 ADVVISATGAPH-----YAKIVERAMKKRSG---KPRLIVDLAVPRDIE 279 (311)
T ss_pred CCEEEECCCCCc-----hHHHHHHHHhhCCC---CCeEEEEeCCCCCCc
Confidence 999999996521 12333332222111 246888888876644
No 120
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.60 E-value=3.4 Score=43.04 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=53.4
Q ss_pred cCeEEEEcc-C-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004558 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (745)
Q Consensus 382 k~HIVI~G~-g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (745)
.+.++|.|. | ..|..+++.|...+ ..|++++++++.++...++....+...++.++.+|.++++.++++-
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG------ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 468999997 4 48999999998654 5688888887666655433211111235778888888887765531
Q ss_pred ----cccccEEEEecC
Q 004558 458 ----VSKARAIIVLAS 469 (745)
Q Consensus 458 ----I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 91 ~~~~~g~id~li~~ag 106 (262)
T PRK07831 91 AVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHcCCCCEEEECCC
Confidence 124566666654
No 121
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=84.53 E-value=4.1 Score=45.19 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC-----CCcCCCCCceEEEEEcCcCCHhhH
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-----LDISGLMNIKLVHREGNAVIRRHL 715 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g-----~~~~~L~~~~V~~i~GD~td~~~L 715 (745)
+..++++|+|||+- ..+++|.+| +.--+|+.+|.+| |.-+++.+. ++...+.|..|.+++.|+- ..|
T Consensus 288 ~~a~~vLvlGGGDG--LAlRellky-P~~~qI~lVdLDP---~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDG--LALRELLKY-PQVEQITLVDLDP---RMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWL 359 (508)
T ss_pred cccceEEEEcCCch--HHHHHHHhC-CCcceEEEEecCH---HHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHH
Confidence 56789999998875 345677766 2356899999876 333333322 3356788888888888874 466
Q ss_pred hcCCCCCcceEEEec
Q 004558 716 ESLPLETFDSMSHWK 730 (745)
Q Consensus 716 ~e~~I~~~DavIilT 730 (745)
+... +.||.+|+=-
T Consensus 360 r~a~-~~fD~vIVDl 373 (508)
T COG4262 360 RTAA-DMFDVVIVDL 373 (508)
T ss_pred Hhhc-ccccEEEEeC
Confidence 6654 3999998855
No 122
>PRK07074 short chain dehydrogenase; Provisional
Probab=84.39 E-value=2.4 Score=43.87 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=54.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+.+..+..+++|..|.+.+++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA---AGDRVLALDID--AAALAAFAD------ALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 57999998 6899999999975 48899998864 355555543 23333455689999999987542
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 72 ~~~~~~~d~vi~~a 85 (257)
T PRK07074 72 AAERGPVDVLVANA 85 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 123579888877
No 123
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=84.30 E-value=3.6 Score=42.59 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=54.4
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
++++|.|.+. .|..++++|...+ ..|++++++++.++...+.. +.++.++.+|.++.+.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG------HKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHH
Confidence 3688998755 6889999998643 67888898887766554322 23578899999999887663
Q ss_pred -CcccccEEEEecC
Q 004558 457 -SVSKARAIIVLAS 469 (745)
Q Consensus 457 -gI~~A~aVIiltd 469 (745)
.....|.+|..+.
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1135788887654
No 124
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.25 E-value=5.3 Score=41.24 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=55.8
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
++++|.|.+. .|..++++|...+ ..|++..++++..+...+... ..+.++.++.+|.++++.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG------HNVIAGVQIAPQVTALRAEAA--RRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4789999754 6889999998653 567777777655444332111 113458889999999999988744478
Q ss_pred cEEEEecC
Q 004558 462 RAIIVLAS 469 (745)
Q Consensus 462 ~aVIiltd 469 (745)
|.+|-.+.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88888764
No 125
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=84.24 E-value=7.4 Score=43.87 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=32.6
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCC---c-CCccChhhhhHHHHhH
Q 004558 310 SDSSFAEALWLSWTFVADSGNHAD---R-VGTGPRIVSVSISSGG 350 (745)
Q Consensus 310 e~~s~~dA~y~~~~tvTTvGygd~---~-~t~~gRi~~v~lil~G 350 (745)
.+.++.++++-++..+.|+|.+-. + -+..++++.++.|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 479999999999999999987532 3 4567888887777765
No 126
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=84.22 E-value=3.3 Score=45.12 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=52.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
++|+|.|+ |-+|..+++.|.+. ..+.+|.+++.++ +....+.+ .+....+..+.||.+|.+.+++. ++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~-g~~~~V~~~~r~~--~~~~~~~~------~~~~~~~~~v~~Dl~d~~~l~~~-~~~ 74 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDE--LKQWEMQQ------KFPAPCLRFFIGDVRDKERLTRA-LRG 74 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHh-CCCcEEEEEcCCh--hHHHHHHH------HhCCCcEEEEEccCCCHHHHHHH-Hhc
Confidence 58999998 78999999999763 1236788887542 22222222 12112344688999999999875 567
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
.|.||-++
T Consensus 75 iD~Vih~A 82 (324)
T TIGR03589 75 VDYVVHAA 82 (324)
T ss_pred CCEEEECc
Confidence 89999876
No 127
>PRK06101 short chain dehydrogenase; Provisional
Probab=84.05 E-value=3.1 Score=42.90 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=46.3
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
+.++|.|.+. .|..++++|...+ ..|++++++++..++.... ..++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG------WQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 3588998765 6889999998643 6788899988776654331 23577889999999988775
No 128
>PRK12829 short chain dehydrogenase; Provisional
Probab=84.03 E-value=4.1 Score=42.15 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=56.5
Q ss_pred ccCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004558 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (745)
Q Consensus 381 ~k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (745)
..++++|.|.+. .|..++++|.+.+ +.|+++.++++..+...++. .+.++.++.+|.++++.++++=
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAG------ARVHVCDVSEAALAATAARL----PGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHH----hcCceEEEEccCCCHHHHHHHHHH
Confidence 346899999865 6889999998643 67888998877665543322 1225688999999999877641
Q ss_pred ----cccccEEEEecCC
Q 004558 458 ----VSKARAIIVLASD 470 (745)
Q Consensus 458 ----I~~A~aVIiltdd 470 (745)
....|.||-.+..
T Consensus 80 ~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 80 AVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2367888877643
No 129
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.96 E-value=3.8 Score=41.98 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=56.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..++++|.+.+ +.|++++++++..+........ +.++.++.+|.++++.++++-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG------ARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5788998754 6999999998653 5689999988776655443211 345788999999999987651
Q ss_pred --cccccEEEEecCC
Q 004558 458 --VSKARAIIVLASD 470 (745)
Q Consensus 458 --I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 2356888877653
No 130
>PRK07024 short chain dehydrogenase; Provisional
Probab=83.73 E-value=3.7 Score=42.71 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=54.5
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+ ++.++.+|.++++.++++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG------ATLGLVARRTDALQAFAARLPK--AA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhccc--CC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 35899999765 6899999998643 5788889888776655443211 12 6888999999988876641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 123577776654
No 131
>PRK06138 short chain dehydrogenase; Provisional
Probab=83.66 E-value=4.2 Score=41.80 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=56.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..++++|.+.+ +.|+++.++.+..+...++.. .+..+.++.+|.++++.++++=
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREG------ARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC------CeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 35889999865 6899999998643 678888888766655443321 2345788999999999887641
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
..+.|.+|-++..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2366888777654
No 132
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.50 E-value=3.9 Score=44.32 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=56.1
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
...+||.|.+. .|..++++|...+ ..|+++.++.+..++..+++.....+.++.++..|.++.+..+++-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG------AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 45788888876 5899999998653 6788888887776665544321112346788999999988877642
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 88 ~~~~~~iD~li~nAG 102 (313)
T PRK05854 88 RAEGRPIHLLINNAG 102 (313)
T ss_pred HHhCCCccEEEECCc
Confidence 124577776554
No 133
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.48 E-value=2.9 Score=40.06 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
..++++|+|.|..|..+++.|.+. .+.++++++.+ .++.+.+++ .+.... +..+..+.+ +. ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~--g~~~v~v~~r~--~~~~~~~~~------~~~~~~---~~~~~~~~~---~~-~~ 80 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL--GAAKIVIVNRT--LEKAKALAE------RFGELG---IAIAYLDLE---EL-LA 80 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEcCC--HHHHHHHHH------HHhhcc---cceeecchh---hc-cc
Confidence 457999999999999999999753 14789998864 466666554 111100 011223332 22 78
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
++|.+|.++
T Consensus 81 ~~Dvvi~~~ 89 (155)
T cd01065 81 EADLIINTT 89 (155)
T ss_pred cCCEEEeCc
Confidence 899999998
No 134
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.37 E-value=4.3 Score=42.14 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=55.4
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.....+.++.++.+|.++++.++++-
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREG------AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4788888765 5889999998653 5788889888776665543311112345778899999998876641
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 125677777664
No 135
>PLN02650 dihydroflavonol-4-reductase
Probab=83.35 E-value=3.6 Score=45.09 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=53.7
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
+.+|+|.|+ |-.|.+++++|...+ +.|++..++++..+.........-...++.++.||..+.+.++++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 568999997 457999999998754 566666555543332211100000112578899999999888775 456
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
++.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8999988754
No 136
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.32 E-value=4.4 Score=41.83 Aligned_cols=81 Identities=22% Similarity=0.138 Sum_probs=55.7
Q ss_pred ccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004558 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (745)
Q Consensus 381 ~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (745)
...+++|.|. |..|..++++|...+ ..|+++.++++..+....++. ..+.++.++.+|.+++++++++-
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG------AKVVLASRRVERLKELRAEIE--AEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 3468899987 447999999998643 568888888877665543221 11235788999999988877642
Q ss_pred ----cccccEEEEecC
Q 004558 458 ----VSKARAIIVLAS 469 (745)
Q Consensus 458 ----I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 124677777665
No 137
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=83.24 E-value=2.5 Score=45.31 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=52.1
Q ss_pred eEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 384 HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
.++|.|. |-.|..+++.|...+ +.|++++++++..+.. ...++.++.||..+.+.++++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG------EEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC------CEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5889986 667999999998754 5788888766443221 123578899999999988875 45678
Q ss_pred EEEEecC
Q 004558 463 AIIVLAS 469 (745)
Q Consensus 463 aVIiltd 469 (745)
.||-++.
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 8887764
No 138
>PRK06482 short chain dehydrogenase; Provisional
Probab=83.14 E-value=5.5 Score=41.83 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=56.0
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
++++|.|.+ ..|..++++|...+ +.|+++.++++.++.+.... +.++.++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARG------DRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHH
Confidence 578999975 46999999998654 57888888887766543321 23578899999999988764
Q ss_pred -CcccccEEEEecCC
Q 004558 457 -SVSKARAIIVLASD 470 (745)
Q Consensus 457 -gI~~A~aVIiltdd 470 (745)
.....+.+|-++..
T Consensus 72 ~~~~~id~vi~~ag~ 86 (276)
T PRK06482 72 AALGRIDVVVSNAGY 86 (276)
T ss_pred HHcCCCCEEEECCCC
Confidence 12356888887754
No 139
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.11 E-value=4.5 Score=42.17 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=54.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...++......+.++.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAG------ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 35788888865 6899999998654 578888888776665443321111234677888999998887653
Q ss_pred --CcccccEEEEecC
Q 004558 457 --SVSKARAIIVLAS 469 (745)
Q Consensus 457 --gI~~A~aVIiltd 469 (745)
.....|.+|-.+.
T Consensus 82 ~~~~g~id~li~~Ag 96 (265)
T PRK07062 82 EARFGGVDMLVNNAG 96 (265)
T ss_pred HHhcCCCCEEEECCC
Confidence 1234577776654
No 140
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=83.00 E-value=12 Score=32.74 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=49.8
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
+|-|+|.|+.|..+++.|...+. ..+.|.++ +++++..++..+++ .+.+... ++.+.++ +||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~--~~~~~~~-----~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSPEKAAELAKEY-------GVQATAD--DNEEAAQ-----EAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSHHHHHHHHHHC-------TTEEESE--EHHHHHH-----HTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcHHHHHHHHHhh-------ccccccC--ChHHhhc-----cCC
Confidence 47789999999999999987642 22456645 99999888776543 1222211 2233333 789
Q ss_pred EEEEecCCCCCCcchHHHHHHHH
Q 004558 463 AIIVLASDENADQSDARALRVVL 485 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~L 485 (745)
.+|+.... .+...+...+
T Consensus 64 vvilav~p-----~~~~~v~~~i 81 (96)
T PF03807_consen 64 VVILAVKP-----QQLPEVLSEI 81 (96)
T ss_dssp EEEE-S-G-----GGHHHHHHHH
T ss_pred EEEEEECH-----HHHHHHHHHH
Confidence 99998863 4555554444
No 141
>PLN02214 cinnamoyl-CoA reductase
Probab=82.96 E-value=4.2 Score=44.70 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=53.5
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.++|+|.|+ |-+|..+++.|.+ .|.+|+.+...++......+.+. . ...++ +..+.||.+|.+.+.++ +.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~--~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE---RGYTVKGTVRNPDDPKNTHLREL--E-GGKER--LILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CcCEEEEEeCCchhhhHHHHHHh--h-CCCCc--EEEEecCcCChHHHHHH-Hh
Confidence 458999999 8999999999975 48899888754322111112110 0 00112 44578999999988775 56
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
.+|.||-++
T Consensus 81 ~~d~Vih~A 89 (342)
T PLN02214 81 GCDGVFHTA 89 (342)
T ss_pred cCCEEEEec
Confidence 789999887
No 142
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=82.95 E-value=2.9 Score=44.75 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.5
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~ 723 (745)
+|+|.|+ |-+|..+++.|.+ .|.+|..+...+. +... +....+..+.||.+|.+.+++. ++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~---~g~~V~~~~r~~~--~~~~----------~~~~~~~~~~~D~~~~~~l~~~-~~~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLE---QGEEVRVLVRPTS--DRRN----------LEGLDVEIVEGDLRDPASLRKA-VAGC 65 (328)
T ss_pred eEEEECCccchhHHHHHHHHH---CCCEEEEEEecCc--cccc----------cccCCceEEEeeCCCHHHHHHH-HhCC
Confidence 6899997 8999999999975 4889999986532 1111 2222345689999999988775 5677
Q ss_pred ceEEEec
Q 004558 724 DSMSHWK 730 (745)
Q Consensus 724 DavIilT 730 (745)
|.|+-+.
T Consensus 66 d~vi~~a 72 (328)
T TIGR03466 66 RALFHVA 72 (328)
T ss_pred CEEEEec
Confidence 9888775
No 143
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.92 E-value=4.7 Score=41.30 Aligned_cols=79 Identities=19% Similarity=0.051 Sum_probs=53.9
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|+ |..|..++++|.+.+ ..|++++++++..+...+.... .+.++.++.+|.++++.+.++-
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG------WDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46888887 457999999998643 5788889887766554432211 1246788999999998876641
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+.|.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777664
No 144
>PLN00198 anthocyanidin reductase; Provisional
Probab=82.86 E-value=5 Score=43.64 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=51.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHH-HHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER-EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er-~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++..+++... ...+.. + ...++ +.+++||.+|.+.+++. +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~--~--~~~~~--~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ---KGYAVNTTVRDPENQKKIAHLRA--L--QELGD--LKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH---CCCEEEEEECCCCCHHHHHHHHh--c--CCCCc--eEEEEcCCCChHHHHHH-H
Confidence 468999996 6799999999976 4888876664432111 111111 0 01123 44689999999988774 5
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.+.|.|+-++
T Consensus 79 ~~~d~vih~A 88 (338)
T PLN00198 79 AGCDLVFHVA 88 (338)
T ss_pred hcCCEEEEeC
Confidence 5789999877
No 145
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=82.74 E-value=4.7 Score=41.97 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=50.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCC-HhhHhcCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI-RRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td-~~~L~e~~I 720 (745)
.++|+|+|+ |.+|..+++.|.+ .|.+|+.+...+ ++.+.+.. ...+ +.++.||.+| .+.+.+. +
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---~g~~V~~~~R~~--~~~~~~~~------~~~~--~~~~~~Dl~d~~~~l~~~-~ 82 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---KGFAVKAGVRDV--DKAKTSLP------QDPS--LQIVRADVTEGSDKLVEA-I 82 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---CCCEEEEEecCH--HHHHHhcc------cCCc--eEEEEeeCCCCHHHHHHH-h
Confidence 468999997 8999999999965 488888877543 44333221 1123 4458899998 3555443 3
Q ss_pred -CCcceEEEec
Q 004558 721 -ETFDSMSHWK 730 (745)
Q Consensus 721 -~~~DavIilT 730 (745)
...|.++..+
T Consensus 83 ~~~~d~vi~~~ 93 (251)
T PLN00141 83 GDDSDAVICAT 93 (251)
T ss_pred hcCCCEEEECC
Confidence 4789999876
No 146
>PRK03612 spermidine synthase; Provisional
Probab=82.70 E-value=4.7 Score=47.32 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC-C---CCcCCCCCceEEEEEcCcCCHhhHh
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-G---LDISGLMNIKLVHREGNAVIRRHLE 716 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~-g---~~~~~L~~~~V~~i~GD~td~~~L~ 716 (745)
+.+++|+++|+|.-+ +++++.++ +...+++++|.+| +-.+...+. . +....+++-.+.+++||+. +.++
T Consensus 296 ~~~~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLR 368 (521)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHH
Confidence 356899999998543 44444443 2237999999763 444443331 0 1111344445667899985 4565
Q ss_pred cCCCCCcceEEEec
Q 004558 717 SLPLETFDSMSHWK 730 (745)
Q Consensus 717 e~~I~~~DavIilT 730 (745)
+. -++||.|++=.
T Consensus 369 ~~-~~~fDvIi~D~ 381 (521)
T PRK03612 369 KL-AEKFDVIIVDL 381 (521)
T ss_pred hC-CCCCCEEEEeC
Confidence 54 37999998844
No 147
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=82.63 E-value=4.1 Score=38.99 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=49.9
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
..+++|+|.|..|..+++.|...+ ...|.+.+++++..+...++... . .+..+..+.+.+ ++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFGE-----L--GIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHhh-----c--ccceeecchhhc----cccC
Confidence 468999999999999999998642 25788899998877765543211 0 011122333222 6899
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||.++..
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 148
>PLN02427 UDP-apiose/xylose synthase
Probab=82.60 E-value=3.6 Score=45.86 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=56.2
Q ss_pred ccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 381 ~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
..++|+|.|+ |-.|.+++++|...+ ++.|+.++++.+..+..... .......++.++.||..+.+.++++ ++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~-----g~~V~~l~r~~~~~~~l~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~-~~ 85 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET-----PHKVLALDVYNDKIKHLLEP-DTVPWSGRIQFHRINIKHDSRLEGL-IK 85 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC-----CCEEEEEecCchhhhhhhcc-ccccCCCCeEEEEcCCCChHHHHHH-hh
Confidence 3468999997 567999999998742 25677777766554433211 0000123688999999999998876 45
Q ss_pred cccEEEEecC
Q 004558 460 KARAIIVLAS 469 (745)
Q Consensus 460 ~A~aVIiltd 469 (745)
.+|.||=++.
T Consensus 86 ~~d~ViHlAa 95 (386)
T PLN02427 86 MADLTINLAA 95 (386)
T ss_pred cCCEEEEccc
Confidence 6899887774
No 149
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.55 E-value=3.1 Score=45.21 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=49.0
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~--~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
+|.|+|.|..|..++..|...+. .+.++++|.+++..+....++... +....+.+. + .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----hCCC
Confidence 79999999999999999876431 257899999887766554433111 111222222 2 23333 4789
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.+|+.+..
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999999976
No 150
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.46 E-value=20 Score=45.89 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-----C-c----CCccChhh-hhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004558 312 SSFAEALWLSWTFVADSGNHA-----D-R----VGTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEKV 369 (745)
Q Consensus 312 ~s~~dA~y~~~~tvTTvGygd-----~-~----~t~~gRi~-~v~lil~Gi~ifa~lig~It~~i~~~l 369 (745)
.+|..+++-.+..++ |-.+ . . ....|.++ ..+++++.++++-+++++|.+.+.+-.
T Consensus 1360 STf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1360 SDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred cCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776665554 3222 1 1 12345554 455566667778899999998888753
No 151
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=82.43 E-value=5.6 Score=43.33 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
.+++|.|+ |-.|..++++|...+ .++.|++.+++....+.+.... ...++.++.||.++.+.+.++ +++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 46888887 557999999998753 1246777777654433322211 123588899999999999875 4568
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 999887653
No 152
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=82.33 E-value=4.3 Score=42.34 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=53.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG------ARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHH
Confidence 35788999865 6889999998654 67888899887776654432 235778889999988776541
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+.|.+|-.+.
T Consensus 75 ~~~~g~id~li~~ag 89 (263)
T PRK06200 75 VDAFGKLDCFVGNAG 89 (263)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566666553
No 153
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.32 E-value=4 Score=44.07 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=53.1
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|.|+ |-.|..++++|...+ +.|+++.++++..+.........-...++.++.||.++.+.++++ +++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~ 77 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDG 77 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcC
Confidence 357899997 446999999998754 566666555443222111000000113578899999999988775 456
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
.|.||-++..
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 8999888864
No 154
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.30 E-value=2.8 Score=45.33 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=29.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
.++++|+|.|++|..+++.|.++ |.+|++.+..+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~---G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL---GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 46999999999999999999864 88999999753
No 155
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=82.28 E-value=3.7 Score=43.47 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=50.7
Q ss_pred EEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----c
Q 004558 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (745)
Q Consensus 385 IVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-----I 458 (745)
|+|.|. |..|..++++|.+.+ +.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g------~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAAS------VPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCC------CcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 778887 778999999998653 56788887775321 124556789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 004558 459 SK-ARAIIVLASD 470 (745)
Q Consensus 459 ~~-A~aVIiltdd 470 (745)
.. ++.++.++..
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888877754
No 156
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.23 E-value=4.4 Score=42.94 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=55.0
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+..+||.|.|..|..++++|. . +..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 457889999888999999984 3 25788888887666554433211 1346788999999998876541
Q ss_pred -cccccEEEEecCC
Q 004558 458 -VSKARAIIVLASD 470 (745)
Q Consensus 458 -I~~A~aVIiltdd 470 (745)
...-|.+|-.+.-
T Consensus 73 ~~g~id~li~nAG~ 86 (275)
T PRK06940 73 TLGPVTGLVHTAGV 86 (275)
T ss_pred hcCCCCEEEECCCc
Confidence 1246777776643
No 157
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=82.14 E-value=1.8 Score=42.31 Aligned_cols=77 Identities=22% Similarity=0.196 Sum_probs=46.7
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-c-cCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-D-FMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~-~-~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
+|.|||.|..|..++..|...+ +.|.|-.++++.++.+.+.... . +.+.... .+..-..+|+++ +++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~---~~i~~t~dl~~a-~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG------HEVTLWGRDEEQIEEINETRQNPKYLPGIKLP---ENIKATTDLEEA-LEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT------EEEEEETSCHHHHHHHHHHTSETTTSTTSBEE---TTEEEESSHHHH-HTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcC------CEEEEEeccHHHHHHHHHhCCCCCCCCCcccC---cccccccCHHHH-hCcc
Confidence 5889999999999999998754 8999999999888776543211 0 1111100 000011234332 5688
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||+..+.
T Consensus 71 d~IiiavPs 79 (157)
T PF01210_consen 71 DIIIIAVPS 79 (157)
T ss_dssp SEEEE-S-G
T ss_pred cEEEecccH
Confidence 999998853
No 158
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=82.12 E-value=4.9 Score=41.66 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=53.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
...++|.|.+. .|..+++.|.+.+ ..|++++++.+..+...++. +..+.++.+|.++++.++++--
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEG------ARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 34688998754 6999999998754 67889999887766654432 2347788899998888766411
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
...|.+|-++.
T Consensus 75 ~~~~~~id~li~~ag 89 (257)
T PRK07067 75 VERFGGIDILFNNAA 89 (257)
T ss_pred HHHcCCCCEEEECCC
Confidence 24567666553
No 159
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.02 E-value=4.9 Score=40.98 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
++++|.|.. ..|..+++.|...+ +.|+++ +++++..+...+.... .+.++.++.+|.++++.++++--
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG------AKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 589999874 57899999997643 567777 8877666554443211 23458889999999998766411
Q ss_pred ----ccccEEEEecCC
Q 004558 459 ----SKARAIIVLASD 470 (745)
Q Consensus 459 ----~~A~aVIiltdd 470 (745)
...|.+|..+..
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 78 VEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHhCCCCEEEECCCc
Confidence 256777776643
No 160
>PRK08309 short chain dehydrogenase; Provisional
Probab=81.97 E-value=5.2 Score=40.12 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=45.7
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
++++|.|+...+..+++.|...+ ..|++..++++..+....... ....+.++.+|..+++.++++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G------~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKG------FHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCc------CEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 47899998777788999998754 577788888877665543221 123567778888888777664
No 161
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.87 E-value=3.8 Score=43.33 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=52.0
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c-
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I- 458 (745)
..++|.|++ ..|..++++|...+ ..|++++++++.++.+.+ .++.++.+|.++++.++++- +
T Consensus 5 k~vlItGasggiG~~la~~l~~~G------~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG------WRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHH
Confidence 479999984 47899999998643 678888988877665432 24678899999998776541 1
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
.+-|.+|-.+.
T Consensus 71 ~~~~g~id~li~~Ag 85 (277)
T PRK05993 71 ELSGGRLDALFNNGA 85 (277)
T ss_pred HHcCCCccEEEECCC
Confidence 24577776653
No 162
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.79 E-value=4.6 Score=42.02 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=53.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
++++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. ..++.++.+|.++++.++++-
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG------ARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHHHHHHHH
Confidence 3789999876 6889999998754 5788889888776655443311 125778889999988776531
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 72 ~~~g~id~li~naG 85 (259)
T PRK08340 72 ELLGGIDALVWNAG 85 (259)
T ss_pred HhcCCCCEEEECCC
Confidence 134566665543
No 163
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=81.68 E-value=3.9 Score=44.71 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=50.4
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC-CHHHHhccCccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t-~~e~L~rAgI~~ 460 (745)
++|+|.|+ |-.|..++++|...+ ++.|+.++++.+...... ...++.++.||.. +.+.+.++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-----~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-----DWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-----CCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 47999998 778999999998642 256777777654433221 1235888999997 66666654 457
Q ss_pred ccEEEEec
Q 004558 461 ARAIIVLA 468 (745)
Q Consensus 461 A~aVIilt 468 (745)
+|.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 89888543
No 164
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.65 E-value=5.1 Score=38.38 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=56.2
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d--~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g 457 (745)
++++|.|.+. .|..++++|...+ +..|+++.++ .+..+....+.. ..+.++.++..|.++++.++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g-----~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG-----ARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-----TEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----ceEEEEeeeccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3789999776 6899999999762 3577777777 455555544332 1346789999999999887775 1
Q ss_pred ----cccccEEEEecCC
Q 004558 458 ----VSKARAIIVLASD 470 (745)
Q Consensus 458 ----I~~A~aVIiltdd 470 (745)
-..-|.+|..+.-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 2255777776655
No 165
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=81.61 E-value=3.1 Score=47.36 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.7
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.++|+|+|.|..|..++..|.+. | .+++|++.. .+|.+.+++ .+.+. ....-+.|.+. +.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt--~~ra~~La~------~~~~~-------~~~~~~~l~~~-l~ 241 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRT--IEKAQKITS------AFRNA-------SAHYLSELPQL-IK 241 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHH------HhcCC-------eEecHHHHHHH-hc
Confidence 46899999999999999999763 5 579999964 588888886 33221 22233444443 77
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
++|.||..|
T Consensus 242 ~aDiVI~aT 250 (414)
T PRK13940 242 KADIIIAAV 250 (414)
T ss_pred cCCEEEECc
Confidence 899999999
No 166
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.56 E-value=5.2 Score=41.41 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=55.2
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+ ..|..++++|.+.+ ..|++.+++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG------AEVILNGRDPAKLAAAAESLKG--QGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCceEEEEEccCCCHHHHHHHHHHH
Confidence 4688899874 46999999998653 5788889888766554433211 1335788899999998877652
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
...-|.+|-.+..
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1235677776643
No 167
>PLN02583 cinnamoyl-CoA reductase
Probab=81.50 E-value=5.7 Score=42.66 Aligned_cols=78 Identities=6% Similarity=-0.089 Sum_probs=51.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHH-HHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~-~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++...+..+.. +.+.+. . . .+-.+..+.+|.+|.+.+.+. +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~---~G~~V~~~~R~~~~~~~~~~~~~l--~--~-~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLS---RGYTVHAAVQKNGETEIEKEIRGL--S--C-EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---CCCEEEEEEcCchhhhHHHHHHhc--c--c-CCCceEEEEecCCCHHHHHHH-H
Confidence 458999998 7899999999975 58999887653322222 122210 0 0 011244578999999988765 5
Q ss_pred CCcceEEEe
Q 004558 721 ETFDSMSHW 729 (745)
Q Consensus 721 ~~~DavIil 729 (745)
...|.++.+
T Consensus 77 ~~~d~v~~~ 85 (297)
T PLN02583 77 KGCSGLFCC 85 (297)
T ss_pred cCCCEEEEe
Confidence 678888753
No 168
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.37 E-value=5.6 Score=41.08 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=53.5
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI 458 (745)
...++|.|.+. .|..++++|.+.+ ..|++++++++..+...+.+. . .+.++.++.+|.++.+.++++ .+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREG------AKVVVADRDAAGGEETVALIR-E-AGGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHH-h-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788998765 6999999998653 568888988776655443321 1 133578889999998877664 11
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
..-|.+|-.+.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 13366666553
No 169
>PRK06182 short chain dehydrogenase; Validated
Probab=81.30 E-value=4.3 Score=42.64 Aligned_cols=75 Identities=21% Similarity=0.059 Sum_probs=54.7
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+ ..|..++++|...+ +.|++++++++.++.... .++.++.+|.++++.++++-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG------YTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 3578999974 47999999998643 678888888877655422 24778899999999887652
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|..+.-
T Consensus 69 ~~~~~~id~li~~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHhcCCCCEEEECCCc
Confidence 1356888877653
No 170
>PLN02427 UDP-apiose/xylose synthase
Probab=81.27 E-value=6.7 Score=43.70 Aligned_cols=82 Identities=15% Similarity=0.033 Sum_probs=55.8
Q ss_pred CCCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 641 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 641 ~~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
..+.+|+|.|+ |-+|..+++.|.+. .|.+|..++..+ ++...+.+.+. ....++ +.++.||.+|.+.++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~-~~~~~~--~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDT-VPWSGR--IQFHRINIKHDSRLEGL- 83 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhcccc-ccCCCC--eEEEEcCCCChHHHHHH-
Confidence 34568999998 89999999999753 257898887542 34343332110 000123 45688999999998876
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
+..+|.||=++
T Consensus 84 ~~~~d~ViHlA 94 (386)
T PLN02427 84 IKMADLTINLA 94 (386)
T ss_pred hhcCCEEEEcc
Confidence 56789999776
No 171
>PRK08017 oxidoreductase; Provisional
Probab=81.09 E-value=4.3 Score=41.84 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=43.6
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
+.++|.|+ |..|..+++.|...+ ..|++++++++.++...+ .++.++.+|.++.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG------YRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 778999999998643 568888888876655421 235678888888877654
No 172
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=80.95 E-value=2.6 Score=47.96 Aligned_cols=69 Identities=23% Similarity=0.144 Sum_probs=48.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..++++|+|.|.+|..+++.|.++ | .+|++++.. .+|.+.+++ .+... ..+.+.+.+. +
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~---G~~~V~v~~rs--~~ra~~la~------~~g~~--------~i~~~~l~~~-l 238 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRK---GVGKILIANRT--YERAEDLAK------ELGGE--------AVKFEDLEEY-L 238 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHC---CCCEEEEEeCC--HHHHHHHHH------HcCCe--------EeeHHHHHHH-H
Confidence 347999999999999999999763 6 789999864 467776665 22211 1122334332 5
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
..+|.||..|
T Consensus 239 ~~aDvVi~aT 248 (417)
T TIGR01035 239 AEADIVISST 248 (417)
T ss_pred hhCCEEEECC
Confidence 6899999998
No 173
>PRK06500 short chain dehydrogenase; Provisional
Probab=80.95 E-value=6.3 Score=40.39 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=52.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.++++|.|.+. .|..++++|...+ ..|++++++++..++..++. +.++.++++|.++.+.++++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG------ARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 35899999855 6899999998754 57888888876666554432 33567888898888775542
Q ss_pred --CcccccEEEEecC
Q 004558 457 --SVSKARAIIVLAS 469 (745)
Q Consensus 457 --gI~~A~aVIiltd 469 (745)
...+.|.+|-++.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1134577776654
No 174
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.87 E-value=4.8 Score=46.00 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.-++++|+|+|.+|..+++.+... |.+|.+++.+| .|+......| ..+ .+ ++++ ++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~dp--~ra~~A~~~G--------~~v-------~~---l~ea-l~ 266 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVDP--ICALQAAMDG--------FRV-------MT---MEEA-AE 266 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCc--hhhHHHHhcC--------CEe-------cC---HHHH-Hh
Confidence 457999999999999999999875 88999998764 4444333212 111 11 1221 34
Q ss_pred CcceEEEecCcchhhh
Q 004558 722 TFDSMSHWKTRLCILT 737 (745)
Q Consensus 722 ~~DavIilTd~~ni~~ 737 (745)
.+|.||..|..-+++.
T Consensus 267 ~aDVVI~aTG~~~vI~ 282 (425)
T PRK05476 267 LGDIFVTATGNKDVIT 282 (425)
T ss_pred CCCEEEECCCCHHHHH
Confidence 7899988886666765
No 175
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.82 E-value=5.7 Score=40.64 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=55.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..++++|.+.+ ..|++++++++..++..++.. ..+.++.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G------~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG------VNVGLLARTEENLKAVAEEVE--AYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--HhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46789999765 6889999998643 678888888766555443321 11346788899999998876641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|..+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 135778877664
No 176
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.81 E-value=3.1 Score=47.45 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=48.3
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..++|+|+|.|.+|..+++.|... |. +|++++.. .+|.+.+++ .+.. +..+.+.+.+ .+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~--~~ra~~la~------~~g~--------~~~~~~~~~~-~l 240 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRT--LERAEELAE------EFGG--------EAIPLDELPE-AL 240 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCC--HHHHHHHHH------HcCC--------cEeeHHHHHH-Hh
Confidence 447999999999999999999753 65 78888864 578777765 2211 1222233433 35
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.||..|
T Consensus 241 ~~aDvVI~aT 250 (423)
T PRK00045 241 AEADIVISST 250 (423)
T ss_pred ccCCEEEECC
Confidence 6899999998
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=80.81 E-value=3.8 Score=48.09 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=49.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.++|+|+|.|..|..+++.|.. .|. +|++++. +.+|.+.+++ .+++..+.+ ...+.+.+ .+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~---~G~~~V~V~nR--s~era~~La~------~~~g~~i~~-----~~~~dl~~-al~ 328 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVS---KGCTKMVVVNR--SEERVAALRE------EFPDVEIIY-----KPLDEMLA-CAA 328 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHh---CCCCeEEEEeC--CHHHHHHHHH------HhCCCceEe-----ecHhhHHH-HHh
Confidence 5689999999999999999975 364 7999986 4688888876 333222211 12222332 367
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
++|.||..|
T Consensus 329 ~aDVVIsAT 337 (519)
T PLN00203 329 EADVVFTST 337 (519)
T ss_pred cCCEEEEcc
Confidence 899999998
No 178
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=80.64 E-value=4.1 Score=43.70 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=52.0
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
.+|+|.|+ |-.|..++++|...+ +.|+++.++++............-...++.++.||..+++.+.++ ++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 47999996 567999999998754 566665555432111100000000123678899999998888765 4578
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 999888754
No 179
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.62 E-value=3.7 Score=44.57 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhh
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLT 688 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~ 688 (745)
..++++|+|.|+.|..+++.|.+. |.+|++++..+ ++++...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~~--~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL---GANVTVGARKS--AHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECCH--HHHHHHH
Confidence 357999999999999999999864 88999998764 4444433
No 180
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.60 E-value=6.1 Score=40.44 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=56.1
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+ ..|..++++|...+ +.|++++++++..+...++... .+.++.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG------ATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4688999974 57999999998643 5677788887766655433211 1345788999999998876641
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
..+.|.+|-++..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357888877653
No 181
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=80.53 E-value=4.3 Score=44.35 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=52.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCc---hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~---~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
++|||.|+ |-+|..+++.|.+ .|.+|..++..+. .++.+.+.+.. ....+..+..+.||.+|.+.+++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~l~~~- 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLE---KGYEVHGLIRRSSSFNTQRIEHIYEDP---HNVNKARMKLHYGDLTDSSNLRRI- 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHH---CCCEEEEEecCCcccchhhhhhhhhcc---ccccccceeEEEeccCCHHHHHHH-
Confidence 47999998 7899999999975 4889999876432 13333332100 000012345688999999988764
Q ss_pred CC--CcceEEEec
Q 004558 720 LE--TFDSMSHWK 730 (745)
Q Consensus 720 I~--~~DavIilT 730 (745)
++ ..|.|+-++
T Consensus 74 ~~~~~~d~ViH~A 86 (343)
T TIGR01472 74 IDEIKPTEIYNLA 86 (343)
T ss_pred HHhCCCCEEEECC
Confidence 22 468888776
No 182
>PLN02214 cinnamoyl-CoA reductase
Probab=80.38 E-value=13 Score=40.69 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHH-HHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEM-DIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~-~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
.++|+|.|. |-.|..++++|...+ +.|+.+.++.+.... ...... . ...++.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG------YTVKGTVRNPDDPKNTHLRELE-G-GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc------CEEEEEeCCchhhhHHHHHHhh-C-CCCcEEEEecCcCChHHHHHH-Hh
Confidence 357999998 567999999998754 567766665443211 111110 0 113577899999999998775 45
Q ss_pred cccEEEEecCC
Q 004558 460 KARAIIVLASD 470 (745)
Q Consensus 460 ~A~aVIiltdd 470 (745)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999998864
No 183
>PRK08643 acetoin reductase; Validated
Probab=80.37 E-value=6.2 Score=40.81 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=53.8
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..+++.|.+.+ ..|++++++++..+....+... .+.++.++.+|.++++.++++=
T Consensus 3 k~~lItGas~giG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG------FKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788888776 5889999998643 5788888887666555433211 1346778899999988766531
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+.|.+|-++.
T Consensus 75 ~~~~~id~vi~~ag 88 (256)
T PRK08643 75 DTFGDLNVVVNNAG 88 (256)
T ss_pred HHcCCCCEEEECCC
Confidence 134677777664
No 184
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=80.16 E-value=8.3 Score=42.32 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=54.0
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCC-CCceEEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L-~~~~V~~i~GD~td~~~L~e~~ 719 (745)
...+|||.|+ |-+|..+++.|.+ .|.+|.++...+ +..+.+.+ .+ .+..+.++.+|.+|.+.++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~- 76 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQ---RGYTVHATLRDP--AKSLHLLS------KWKEGDRLRLFRADLQEEGSFDEA- 76 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHH------hhccCCeEEEEECCCCCHHHHHHH-
Confidence 3458999997 7899999999975 488998877543 33222221 11 112344688999999988775
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
++..|.||-++
T Consensus 77 ~~~~d~Vih~A 87 (353)
T PLN02896 77 VKGCDGVFHVA 87 (353)
T ss_pred HcCCCEEEECC
Confidence 55789999888
No 185
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.15 E-value=4.5 Score=38.28 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=53.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchH----HHHHhh--cCCCC---------cCCCCCceEEEEE
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE----REKKLT--DGGLD---------ISGLMNIKLVHRE 706 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~e----r~~~l~--e~g~~---------~~~L~~~~V~~i~ 706 (745)
..||+|+|.|..|..+++.|... |. +++|++.+.-++ |.-... +-|.. ....++..+..+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 35899999999999999999864 54 799999753211 100000 11100 1123566776666
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCcchh
Q 004558 707 GNAVIRRHLESLPLETFDSMSHWKTRLCI 735 (745)
Q Consensus 707 GD~td~~~L~e~~I~~~DavIilTd~~ni 735 (745)
.+. +.+.+.+. ++++|.||..+|....
T Consensus 79 ~~~-~~~~~~~~-~~~~d~vi~~~d~~~~ 105 (135)
T PF00899_consen 79 EKI-DEENIEEL-LKDYDIVIDCVDSLAA 105 (135)
T ss_dssp SHC-SHHHHHHH-HHTSSEEEEESSSHHH
T ss_pred ccc-cccccccc-ccCCCEEEEecCCHHH
Confidence 666 44444443 4789999988876543
No 186
>PLN02928 oxidoreductase family protein
Probab=80.14 E-value=2.7 Score=46.70 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
-+++.|+|.|++|..+++.|..+ |.+|...+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF---GVKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 46899999999999999999865 9999998754
No 187
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.14 E-value=3.1 Score=47.24 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.-++|+|+|+|.+|..+++.+..+ |.+|.+++.+| .|+......| ..+ . + +++ -+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d~dp--~r~~~A~~~G--------~~v--~--~------lee-al~ 249 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM---GARVIVTEVDP--IRALEAAMDG--------FRV--M--T------MEE-AAK 249 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC---cCEEEEEeCCh--hhHHHHHhcC--------CEe--C--C------HHH-HHh
Confidence 456999999999999999999864 88999998766 3443332212 121 1 1 112 145
Q ss_pred CcceEEEecCcchhhhh
Q 004558 722 TFDSMSHWKTRLCILTH 738 (745)
Q Consensus 722 ~~DavIilTd~~ni~~~ 738 (745)
.+|.+|..|...+++..
T Consensus 250 ~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 250 IGDIFITATGNKDVIRG 266 (406)
T ss_pred cCCEEEECCCCHHHHHH
Confidence 78999888866776653
No 188
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=80.11 E-value=19 Score=39.32 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=35.9
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhh
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL 431 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~ 431 (745)
..=.||.|+++ .|...++||.+. |..|+||.+++++++....++
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkr------G~nvvLIsRt~~KL~~v~kEI 93 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKR------GFNVVLISRTQEKLEAVAKEI 93 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHH
Confidence 46788999988 589999999874 467999999999988775543
No 189
>PRK06924 short chain dehydrogenase; Provisional
Probab=80.09 E-value=5.3 Score=41.13 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=43.5
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
++++|.|.+. .|..++++|.+.+ ..|+++++++ +.++...+. .+.++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG------THVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC------CEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 4789998754 6999999998653 5677777765 444443221 134577888999998887664
No 190
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.06 E-value=5.4 Score=42.80 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=55.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
...++|.|.+. .|..++++|...+ ..|+++.++++..+...+++.....+.++.++.+|.++.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKG------AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 35788888754 6999999998754 5678888887665544433211112346788999999999877641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+-|.+|-.+.
T Consensus 90 ~~~~~~iD~li~nAg 104 (306)
T PRK06197 90 RAAYPRIDLLINNAG 104 (306)
T ss_pred HhhCCCCCEEEECCc
Confidence 235688887764
No 191
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.04 E-value=6.6 Score=41.04 Aligned_cols=81 Identities=16% Similarity=0.061 Sum_probs=55.9
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..++++|.+.+ ..|++.+++++..++..+... -.+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G------~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAG------ATIVFNDINQELVDKGLAAYR--ELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788888865 6889999998654 567888888777665544321 11346888999999998877642
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
...-|.+|..+.-
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 2346777776643
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=79.81 E-value=2.9 Score=44.15 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC-CCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~-g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.+++|||+|+|.-+ +++++.++ .+-.+++++|.+| +-.+...+. +.....+.+-.+.++++|+. ..|++..=
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell~~-~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELLKH-PPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHTTS-TT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSS
T ss_pred CcCceEEEcCCChh--hhhhhhhc-CCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccC
Confidence 68899999998764 35566554 3346899999864 332221110 00001244556667889884 56666433
Q ss_pred CCcceEEEec-Ccchhhhhh
Q 004558 721 ETFDSMSHWK-TRLCILTHV 739 (745)
Q Consensus 721 ~~~DavIilT-d~~ni~~~~ 739 (745)
++||.||+=. |..+.-..+
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGG
T ss_pred CcccEEEEeCCCCCCCcccc
Confidence 3999999866 544333333
No 193
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=79.77 E-value=5.1 Score=44.94 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=51.7
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
...++|+|.|..|...++.+...+ ..|+++|.++++.+.+...+ +.. +..+..+.+.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG------a~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG------ATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC------CeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 456999999999999999998654 46888999988766654322 111 22344566777666 6789
Q ss_pred cEEEEec
Q 004558 462 RAIIVLA 468 (745)
Q Consensus 462 ~aVIilt 468 (745)
|.+|..+
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 194
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.75 E-value=6.2 Score=40.53 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=53.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c-
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I- 458 (745)
++++|.|.+. .|..+++.|.+.+ ..|++++++++..+...++.. ...+.++.++.+|.++++.++++- +
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG------ARLYLAARDVERLERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC------CEEEEEeCCHHHHHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3789998654 6899999998643 678888888876655443321 111346888999999998877641 1
Q ss_pred ccccEEEEecC
Q 004558 459 SKARAIIVLAS 469 (745)
Q Consensus 459 ~~A~aVIiltd 469 (745)
.+.+.+|..+.
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 23477776553
No 195
>PRK09242 tropinone reductase; Provisional
Probab=79.73 E-value=6.7 Score=40.65 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=53.8
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+ ..|..++++|.+.+ ..|++++++++..++..+++.....+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLG------ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467888875 46899999998653 5788888888776665543311112346788899999887765531
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+-|.+|.++.
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 124567776664
No 196
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.72 E-value=7.2 Score=40.89 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=55.1
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+ ..|..+++.|.+.+ ..|+++.++++..+...++........++.++.+|.++++.++++-
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG------AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4689999974 57999999998653 5788888887665554433210001235778889999988776641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-++.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 125688887764
No 197
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.72 E-value=6.7 Score=40.64 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=53.3
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (745)
+.++|.|.+. .|..+++.|.+.+ ..|++++++++..+...++........++.++.+|.++++.++++--
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 76 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG------YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD 76 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH
Confidence 4588888865 5889999998643 67888888876655544332111111357888999999888776411
Q ss_pred ---ccccEEEEecC
Q 004558 459 ---SKARAIIVLAS 469 (745)
Q Consensus 459 ---~~A~aVIiltd 469 (745)
..-|.+|-++.
T Consensus 77 ~~~~~id~vv~~ag 90 (259)
T PRK12384 77 EIFGRVDLLVYNAG 90 (259)
T ss_pred HHcCCCCEEEECCC
Confidence 24577777664
No 198
>PRK05884 short chain dehydrogenase; Provisional
Probab=79.56 E-value=4.5 Score=41.43 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=50.5
Q ss_pred eEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---c
Q 004558 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (745)
Q Consensus 384 HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI---~ 459 (745)
+++|.|.+ ..|..++++|...+ ..|+++++++++++...++ .++.++.+|.++++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g------~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG------HKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 58899875 46899999998643 6788889888776655432 135578899999988776511 1
Q ss_pred cccEEEEec
Q 004558 460 KARAIIVLA 468 (745)
Q Consensus 460 ~A~aVIilt 468 (745)
+.|.+|-++
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 456666654
No 199
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=79.53 E-value=5.9 Score=43.55 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC--CCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~--g~~~~~L~~~~V~~i~GD~td~~~L~e~ 718 (745)
..++|+|.|+ |-+|..+++.|.+ .|.+|..++..+. ..+..+.+. ........ .+.++.||.+|.+.|+++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~---~g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~Di~d~~~l~~~ 87 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLF---LNQTVIGLDNFST-GYQHNLDDVRTSVSEEQWS--RFIFIQGDIRKFTDCQKA 87 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCCC-cchhhhhhhhhccccccCC--ceEEEEccCCCHHHHHHH
Confidence 3478999998 9999999999976 3889998875421 111111110 00000112 245688999999888765
Q ss_pred CCCCcceEEEec
Q 004558 719 PLETFDSMSHWK 730 (745)
Q Consensus 719 ~I~~~DavIilT 730 (745)
++++|.||-+.
T Consensus 88 -~~~~d~ViHlA 98 (348)
T PRK15181 88 -CKNVDYVLHQA 98 (348)
T ss_pred -hhCCCEEEECc
Confidence 56799999886
No 200
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.48 E-value=19 Score=32.67 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=48.8
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (745)
++.|+|.|..|...+..+..... +...+-++|.+++..+...++. ++. . .++.+.|.... +.|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-------~~~-~---~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-------GIP-V---YTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-------TSE-E---ESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-------ccc-c---hhHHHHHHHhh--cCCE
Confidence 68999999999988888876532 2256668899998877765543 222 1 23455544433 7999
Q ss_pred EEEecCC
Q 004558 464 IIVLASD 470 (745)
Q Consensus 464 VIiltdd 470 (745)
+++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999963
No 201
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.45 E-value=7.5 Score=37.03 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=51.5
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchH----HHHHh--hcCCCC---------cCCCCCceEEEEEcC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE----REKKL--TDGGLD---------ISGLMNIKLVHREGN 708 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~e----r~~~l--~e~g~~---------~~~L~~~~V~~i~GD 708 (745)
+|+|+|.|..|..+++.|... |. ++++++.+.-++ |.... .+-|.. ....+++.+..+..+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 689999999999999999763 55 799998652111 11111 000100 012246666666666
Q ss_pred cCCHhhHhcCCCCCcceEEEecCcch
Q 004558 709 AVIRRHLESLPLETFDSMSHWKTRLC 734 (745)
Q Consensus 709 ~td~~~L~e~~I~~~DavIilTd~~n 734 (745)
...... .+-+..+|.+|..+|...
T Consensus 78 ~~~~~~--~~~~~~~diVi~~~d~~~ 101 (143)
T cd01483 78 ISEDNL--DDFLDGVDLVIDAIDNIA 101 (143)
T ss_pred cChhhH--HHHhcCCCEEEECCCCHH
Confidence 555433 333578999998886643
No 202
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.39 E-value=7.1 Score=40.39 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=53.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C-
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g- 457 (745)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. .+.++.++.+|.++++.+.++ .
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG------AHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 45788888765 6889999998643 6788899887766655443211 134578899999999887664 1
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+.+.+|-.+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 123466666554
No 203
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=79.37 E-value=9.1 Score=46.68 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhhcc-------CC----CHHHHHHHHHHhhhcCCCCCCc---CCccChhhhhHHHHhHHH
Q 004558 291 LLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGGML 352 (745)
Q Consensus 291 L~~~~l~liligt~~~~~ie-------~~----s~~dA~y~~~~tvTTvGygd~~---~t~~gRi~~v~lil~Gi~ 352 (745)
+++.+++++++|+++++.+| +. -+.+||++++.+ -|.||.-.+ .+.+..++.+++|.+|..
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~ 661 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVL 661 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccC
Confidence 44556677888888888876 22 378888888654 678997664 344556666666666543
No 204
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.31 E-value=7.1 Score=39.87 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=52.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCc----h-------------HHHHHhhcCCCCcCCCCCceEE
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE----K-------------EREKKLTDGGLDISGLMNIKLV 703 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~----~-------------er~~~l~e~g~~~~~L~~~~V~ 703 (745)
...+|+|+|.|..|..+++.|... |. ++++++.+.- - .|.+.+++. + ...-+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~-l-~~~np~v~i~ 94 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQR-L-RELNSDIQVT 94 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHH-H-HHhCCCCEEE
Confidence 456999999999999999999764 65 8999997521 1 122222210 0 0122456665
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 704 HREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 704 ~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
.+..+... +.+.+ -+.++|.||..+|..
T Consensus 95 ~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~ 122 (202)
T TIGR02356 95 ALKERVTA-ENLEL-LINNVDLVLDCTDNF 122 (202)
T ss_pred EehhcCCH-HHHHH-HHhCCCEEEECCCCH
Confidence 44444433 33433 367899999888654
No 205
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.29 E-value=7 Score=41.06 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=52.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (745)
..++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. ..+.++.++.+|.++++.++++--
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAG------ADVILLSRNEENLKKAREKIKS-ESNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4678888865 7999999998754 5788889988776655443211 113467888999999888766411
Q ss_pred --ccccEEEEec
Q 004558 459 --SKARAIIVLA 468 (745)
Q Consensus 459 --~~A~aVIilt 468 (745)
..-|.+|..+
T Consensus 82 ~~g~iD~lv~na 93 (263)
T PRK08339 82 NIGEPDIFFFST 93 (263)
T ss_pred hhCCCcEEEECC
Confidence 2345665554
No 206
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.29 E-value=4.2 Score=46.86 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=29.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
..++|+|+|+|..|..+++.|.+ .|.+|++++..+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~---~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE---LGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCc
Confidence 45699999999999999998875 489999998643
No 207
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.25 E-value=5.6 Score=41.17 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=54.4
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-- 718 (745)
+.++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .+..+.+.+ .+++..+..+.+|.+|++.+++.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~---~g~~V~~~~r~--~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAE---AGARVHVCDVS--EAALAATAA------RLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HHhcCceEEEEccCCCHHHHHHHHH
Confidence 3479999998 6789999999976 48899998864 344444433 12222345688999999977642
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 79 ~~~~~~~~~d~vi~~a 94 (264)
T PRK12829 79 TAVERFGGLDVLVNNA 94 (264)
T ss_pred HHHHHhCCCCEEEECC
Confidence 134679988766
No 208
>PRK06196 oxidoreductase; Provisional
Probab=79.25 E-value=6.2 Score=42.66 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=54.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|.+. .|..++++|...+ +.|+++.++++..+...+++ .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G------~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAG------AHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4788899855 6899999998754 67888888887766554432 13678899999998876642
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+.|.+|..+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 245788887764
No 209
>PRK06194 hypothetical protein; Provisional
Probab=79.17 E-value=3.7 Score=43.34 Aligned_cols=76 Identities=9% Similarity=0.017 Sum_probs=52.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L--~~~~V~~i~GD~td~~~L~e~-- 718 (745)
+++||.|+ |-+|..++++|.+ .|.+|.+++..+ ++.+.+.+ .+ .+..+..+.+|.+|.+.+++.
T Consensus 7 k~vlVtGasggIG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAA---LGMKLVLADVQQ--DALDRAVA------ELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHH---CCCEEEEEeCCh--HHHHHHHH------HHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 68999998 6799999999976 489999988642 33333222 11 133455689999999888653
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
..+..|.+|-++
T Consensus 76 ~~~~~~g~id~vi~~A 91 (287)
T PRK06194 76 AALERFGAVHLLFNNA 91 (287)
T ss_pred HHHHHcCCCCEEEECC
Confidence 113468888776
No 210
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=79.17 E-value=5.6 Score=42.66 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=52.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCch-HHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~-er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
++|+|.|+ |-+|..+++.|.+ .|.+|.++..++.. +....+... . ..-++ +..+.||.+|.+.++++ ++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~--~~~~~~Dl~~~~~~~~~-~~ 75 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ---RGYTVKATVRDPNDPKKTEHLLAL--D-GAKER--LHLFKANLLEEGSFDSV-VD 75 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH---CCCEEEEEEcCCCchhhHHHHHhc--c-CCCCc--eEEEeccccCcchHHHH-Hc
Confidence 68999997 8999999999975 48888877654321 111122110 0 00123 44688999998887765 56
Q ss_pred CcceEEEec
Q 004558 722 TFDSMSHWK 730 (745)
Q Consensus 722 ~~DavIilT 730 (745)
.+|.||-++
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 789998886
No 211
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.04 E-value=6.6 Score=42.16 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=55.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+.++.++.+|.++++.++++-
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G------~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG------ATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35788889754 6899999998643 6788899888776665443211 1235778899999988766541
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 112 ~~~~g~id~li~~AG~ 127 (293)
T PRK05866 112 EKRIGGVDILINNAGR 127 (293)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356888877643
No 212
>PRK07074 short chain dehydrogenase; Provisional
Probab=79.03 E-value=8.2 Score=39.93 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=55.3
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (745)
..++|.|.+ ..|..+++.|.+.+ ..|++++++++..+...++. .+..+.++.+|..+.+.++++--
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG------DRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888874 57999999998643 56888888887766554432 23457889999999998865422
Q ss_pred ---ccccEEEEecCC
Q 004558 459 ---SKARAIIVLASD 470 (745)
Q Consensus 459 ---~~A~aVIiltdd 470 (745)
...|.+|-.+..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVANAGA 87 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 246888887754
No 213
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.01 E-value=3.3 Score=47.85 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
.-++++|+|+|++|..+++.+..+ |.+|.+.+.+|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e~dp 287 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF---GARVVVTEIDP 287 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCc
Confidence 457999999999999999999865 88999998764
No 214
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.00 E-value=7.4 Score=40.02 Aligned_cols=80 Identities=15% Similarity=0.033 Sum_probs=55.9
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
++++|.|.+ ..|..++++|...+ ..|++++++++..+....+.. ..+.++.++.+|.++++.++++-
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEG------AKVVIADLNDEAAAAAAEALQ--KAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 589999964 46999999998643 678888888776655443321 02346788999999999887642
Q ss_pred --cccccEEEEecCC
Q 004558 458 --VSKARAIIVLASD 470 (745)
Q Consensus 458 --I~~A~aVIiltdd 470 (745)
....|.+|.++..
T Consensus 77 ~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 77 ETFGGVDILVNNAGI 91 (258)
T ss_pred HHcCCCCEEEECCCC
Confidence 1356888876643
No 215
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=78.90 E-value=7.3 Score=41.24 Aligned_cols=81 Identities=5% Similarity=-0.010 Sum_probs=53.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
+.-+++|+|.|.++..+++..... |.+|++++..+ + ...+ ..++++.. ++..++ .+.+.. +.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~--~---~~~~-----~~~~~~~~-~~~~~~--~~~~~~--~~ 160 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL---PCRVTWVDSRE--A---EFPE-----DLPDGVAT-LVTDEP--EAEVAE--AP 160 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCc--c---cccc-----cCCCCceE-EecCCH--HHHHhc--CC
Confidence 445999999999999999988754 99999999643 2 2221 13445432 233332 344443 56
Q ss_pred CcceEEEec----Ccchhhhhhc
Q 004558 722 TFDSMSHWK----TRLCILTHVL 740 (745)
Q Consensus 722 ~~DavIilT----d~~ni~~~~~ 740 (745)
.-|++|++| .+.-+|.++|
T Consensus 161 ~~t~vvi~th~h~~D~~~L~~aL 183 (246)
T TIGR02964 161 PGSYFLVLTHDHALDLELCHAAL 183 (246)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH
Confidence 789999999 3455666666
No 216
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.77 E-value=7.3 Score=40.18 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=55.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+....+... .+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG------ADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHH
Confidence 46788999765 6899999998643 6788888888766555433210 134577889999998887653
Q ss_pred --CcccccEEEEecC
Q 004558 457 --SVSKARAIIVLAS 469 (745)
Q Consensus 457 --gI~~A~aVIiltd 469 (745)
...+.|.+|-.+.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1235688877764
No 217
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.76 E-value=7.9 Score=39.56 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=55.2
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (745)
.+.++|.|.+ ..|..++++|.+.+ ..|+++.++++..+.....+.. .+.++.++.+|..+++.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG------AEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3578899865 46899999998653 5688888886655444332211 1335788999999998887752 1
Q ss_pred ----ccccEEEEecCC
Q 004558 459 ----SKARAIIVLASD 470 (745)
Q Consensus 459 ----~~A~aVIiltdd 470 (745)
...+.+|-++..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 257888877644
No 218
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=78.54 E-value=18 Score=41.28 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
.++++|.|++. .|..++++|...+ ..|+++++++++.+....+ ...++.++.+|.++++.+++. +.+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G------~~Vi~l~r~~~~l~~~~~~-----~~~~v~~v~~Dvsd~~~v~~~-l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQG------AKVVALTSNSDKITLEING-----EDLPVKTLHWQVGQEAALAEL-LEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhh-----cCCCeEEEEeeCCCHHHHHHH-hCC
Confidence 35788999855 6999999998643 5778888777655433221 122466788999999987764 457
Q ss_pred ccEEEEecC
Q 004558 461 ARAIIVLAS 469 (745)
Q Consensus 461 A~aVIiltd 469 (745)
.|.+|..+.
T Consensus 246 IDiLInnAG 254 (406)
T PRK07424 246 VDILIINHG 254 (406)
T ss_pred CCEEEECCC
Confidence 888887664
No 219
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.36 E-value=6.9 Score=40.41 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=55.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. .+.++.++.+|.++.+.++++-
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAG------AAVAIADLNQDGANAVADEINK--AGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CeEEEEeCChHHHHHHHHHHHh--cCceEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999854 6889999998653 5688888888666555443211 1345778999999999887641
Q ss_pred --cccccEEEEecCC
Q 004558 458 --VSKARAIIVLASD 470 (745)
Q Consensus 458 --I~~A~aVIiltdd 470 (745)
....|.+|-++..
T Consensus 80 ~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 80 ERFGSVDILVSNAGI 94 (262)
T ss_pred HHcCCCCEEEECCcc
Confidence 1246777776643
No 220
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.26 E-value=8.3 Score=39.91 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=54.3
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..++++|.+.+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAG------AQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 5788889854 6999999998654 6788889988777665443211 1345778889999988876641
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 125577776554
No 221
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.24 E-value=7.1 Score=40.90 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=53.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
..+++|.|.+. .|..++++|...+ +.|+++++++++.+...++... .+.++.++.+|.++++.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAG------ANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 46899999854 6889999998643 6788888887766554332211 123467888999998887664
Q ss_pred --CcccccEEEEec
Q 004558 457 --SVSKARAIIVLA 468 (745)
Q Consensus 457 --gI~~A~aVIilt 468 (745)
.....|.+|..+
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 112457777655
No 222
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.15 E-value=7.3 Score=39.86 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=54.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~-~~~V~~i~GD~td~~~L~e~-- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+. +..+..+.+|.+|.+.+++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAA---EGARVVVTDRNE--EAAERVAA------EILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHH------HHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 458999997 6799999999975 488999998753 44444332 111 22355689999999988653
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 74 ~~~~~~~~~d~vi~~a 89 (251)
T PRK07231 74 AALERFGSVDILVNNA 89 (251)
T ss_pred HHHHHhCCCCEEEECC
Confidence 234678888876
No 223
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.13 E-value=8.2 Score=40.05 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=55.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
..+++|.|.+. .|..+++.|...+ ..|++++++++..+.....+. ..+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAG------ARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 36799998754 6899999998643 578888888776655443221 11335778999999998885531
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|-++..
T Consensus 84 ~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 84 LERFGHVDILVNNAGA 99 (259)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1346788877653
No 224
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.10 E-value=8.2 Score=41.27 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=34.4
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 691 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g 691 (745)
+|.|+|.|.+|..++..|.+. |.+|++++.+ .++++.+.+.|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~--~~~~~~~~~~g 43 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARR--GAHLDALNENG 43 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECC--hHHHHHHHHcC
Confidence 699999999999999999763 8899999964 46777776544
No 225
>PRK05650 short chain dehydrogenase; Provisional
Probab=78.09 E-value=7.8 Score=40.58 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=54.4
Q ss_pred eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 004558 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (745)
Q Consensus 384 HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (745)
+++|.|.+. .|..++++|...+ ..|++++++.+..+....+... .+.++.++.+|.++++.++++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG------WRLALADVNEEGGEETLKLLRE--AGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 788998754 6899999998653 5788888887766655443211 2346788899999988876641
Q ss_pred -cccccEEEEecCC
Q 004558 458 -VSKARAIIVLASD 470 (745)
Q Consensus 458 -I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 74 ~~~~id~lI~~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVNNAGV 87 (270)
T ss_pred HcCCCCEEEECCCC
Confidence 1346777776543
No 226
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=78.08 E-value=4 Score=45.92 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH--HHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~--l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
...|+|.|. |..|..++++|...+ +.|+++.+++...+.. ..+... ...++.++.||.++++.++++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G------~~V~~l~R~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG------YNVVAVAREKSGIRGKNGKEDTKK--ELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEEechhhccccchhhHHhh--hcCCceEEEeeCCCHHHHHHHHH
Confidence 457899987 557999999998643 5677777766432110 000000 12357899999999999987632
Q ss_pred c---cccEEEEecC
Q 004558 459 S---KARAIIVLAS 469 (745)
Q Consensus 459 ~---~A~aVIiltd 469 (745)
. .+|.||.+..
T Consensus 132 ~~~~~~D~Vi~~aa 145 (390)
T PLN02657 132 SEGDPVDVVVSCLA 145 (390)
T ss_pred HhCCCCcEEEECCc
Confidence 2 5888886553
No 227
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=77.94 E-value=2.1 Score=40.52 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCcCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 314 ~~dA~y~~~~tvTTvGygd~~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
+.+++|+++.+++.-|.-..|.+..+|++.+++.++++++.+...+.++..+...
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6778887776666533333467889999999999999988888878777766553
No 228
>PRK10637 cysG siroheme synthase; Provisional
Probab=77.80 E-value=19 Score=41.65 Aligned_cols=85 Identities=15% Similarity=0.035 Sum_probs=55.9
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEc-CChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAE-RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD-~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
...+++|+|+|+++.+=++.|...+ ..|+++. .-.+++..+.. ..++.++..+.. +++| +
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g------a~v~visp~~~~~~~~l~~-------~~~i~~~~~~~~-~~dl-----~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG------ARLTVNALAFIPQFTAWAD-------AGMLTLVEGPFD-ESLL-----D 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCCC-hHHh-----C
Confidence 3569999999999888788888754 3444443 32234444322 235667776653 4554 5
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 004558 460 KARAIIVLASDENADQSDARALRVVLSLTGV 490 (745)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l 490 (745)
.|+.||+.|+| .+.|-.+.-.++..
T Consensus 72 ~~~lv~~at~d------~~~n~~i~~~a~~~ 96 (457)
T PRK10637 72 TCWLAIAATDD------DAVNQRVSEAAEAR 96 (457)
T ss_pred CCEEEEECCCC------HHHhHHHHHHHHHc
Confidence 78888998864 56787777777764
No 229
>PRK06180 short chain dehydrogenase; Provisional
Probab=77.76 E-value=7.3 Score=41.10 Aligned_cols=77 Identities=17% Similarity=-0.002 Sum_probs=54.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
+.++|.|.+. .|..++++|...+ +.|++++++++..+.+.+. .+.++.++.+|.++++.+.++-
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG------HRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc------CEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4689999755 6899999998643 6788899988776654332 1235778899999998876641
Q ss_pred --cccccEEEEecCC
Q 004558 458 --VSKARAIIVLASD 470 (745)
Q Consensus 458 --I~~A~aVIiltdd 470 (745)
....+.+|-++..
T Consensus 74 ~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 74 ATFGPIDVLVNNAGY 88 (277)
T ss_pred HHhCCCCEEEECCCc
Confidence 1245777776644
No 230
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=77.73 E-value=24 Score=33.21 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~ 421 (745)
+.||+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcc
Confidence 4689999999999999999998763 3577777664
No 231
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.61 E-value=6.9 Score=41.02 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=52.0
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (745)
+.++|.|++. .|..++++|...+ ..|++.+++++.+++..+.. .++.++.+|.++++.++++ .+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALG------ARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHH
Confidence 4789999865 6889999998643 67888889887776654332 1367788999998886542 11
Q ss_pred ---ccccEEEEecC
Q 004558 459 ---SKARAIIVLAS 469 (745)
Q Consensus 459 ---~~A~aVIiltd 469 (745)
...|.+|..+.
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 24566666553
No 232
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.58 E-value=7.8 Score=40.23 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
+.++|.|++. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG------AQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999854 6889999998643 5788888887666654433211 134677889999998887664
Q ss_pred -CcccccEEEEecC
Q 004558 457 -SVSKARAIIVLAS 469 (745)
Q Consensus 457 -gI~~A~aVIiltd 469 (745)
.....|.+|-++.
T Consensus 74 ~~~~~id~vi~~ag 87 (263)
T PRK06181 74 ARFGGIDILVNNAG 87 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 1125677777764
No 233
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=77.55 E-value=9.9 Score=41.01 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=52.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCch-HHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~-er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.++++|.|+ |-+|..+++.|.+ .|.+|.++..++.. +....+... ... ...+..+.||.+|.+.+++. +
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~----~~~-~~~~~~~~~D~~d~~~~~~~-~ 75 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF---RGYTINATVRDPKDRKKTDHLLAL----DGA-KERLKLFKADLLDEGSFELA-I 75 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH---CCCEEEEEEcCCcchhhHHHHHhc----cCC-CCceEEEeCCCCCchHHHHH-H
Confidence 468999998 7899999999976 48888877644321 111111110 000 11344578999999988765 5
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
+..|.+|-++
T Consensus 76 ~~~d~vih~A 85 (325)
T PLN02989 76 DGCETVFHTA 85 (325)
T ss_pred cCCCEEEEeC
Confidence 5689998887
No 234
>PLN02650 dihydroflavonol-4-reductase
Probab=77.55 E-value=7.9 Score=42.43 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e~~ 719 (745)
.++|||.|+ |-+|..+++.|.+ .|.+|.++..++ +....+.+. . .++ +..+.++.||.+|.+.+++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~---~G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~v~~Dl~d~~~~~~~- 74 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE---RGYTVRATVRDP--ANVKKVKHL-L---DLPGATTRLTLWKADLAVEGSFDDA- 74 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH---CCCEEEEEEcCc--chhHHHHHH-H---hccCCCCceEEEEecCCChhhHHHH-
Confidence 458999998 8999999999975 488888776543 222221110 0 011 11245689999999888775
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
++.+|.|+-++
T Consensus 75 ~~~~d~ViH~A 85 (351)
T PLN02650 75 IRGCTGVFHVA 85 (351)
T ss_pred HhCCCEEEEeC
Confidence 56789999886
No 235
>PRK08219 short chain dehydrogenase; Provisional
Probab=77.48 E-value=7.7 Score=39.05 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=52.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--cc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I~ 459 (745)
++++|.|.+. .|..++++|... +.|++++++++..+.+... ..++.++.+|.++++.++++- +.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 5789998754 688999999753 3577888877665544321 124778999999999987742 23
Q ss_pred cccEEEEecCC
Q 004558 460 KARAIIVLASD 470 (745)
Q Consensus 460 ~A~aVIiltdd 470 (745)
+.+.+|-+...
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 67888877654
No 236
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=77.46 E-value=8.1 Score=40.25 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=51.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|.+. .|..++++|.+.+ ..|++++++.+.++.+.+. .+.++.++.+|.++.+.++++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEG------ARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCV 74 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHH
Confidence 5778888765 6999999998754 6788889887766654332 1235778889999887665531
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+-|.+|-.+.
T Consensus 75 ~~~g~id~li~~Ag 88 (262)
T TIGR03325 75 AAFGKIDCLIPNAG 88 (262)
T ss_pred HHhCCCCEEEECCC
Confidence 124466766653
No 237
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.43 E-value=8.8 Score=38.91 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=54.9
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI- 458 (745)
++++|.|.+. .|..++++|.+.+ +.|+++.++++..+....... ..+.++.++.+|.++++.+.++ ++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG------AKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999754 6899999998643 568888888776555443221 1134577888999999887664 22
Q ss_pred ---ccccEEEEecCC
Q 004558 459 ---SKARAIIVLASD 470 (745)
Q Consensus 459 ---~~A~aVIiltdd 470 (745)
...+.+|-++..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 245888877644
No 238
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=77.26 E-value=6 Score=38.10 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=49.2
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~--~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
++|.|+|. |..|..++-.|...+ -...++|+|.+++..+....++.+ .+...++ ..+. .+.++ +.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~-~~~~~-----~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITS-GDYEA-----LK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEE-SSGGG-----GT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhccccc--cccc-ccccc-----cc
Confidence 58999999 999999999988754 235699999997655544333311 1112222 2222 33333 45
Q ss_pred cccEEEEecCC
Q 004558 460 KARAIIVLASD 470 (745)
Q Consensus 460 ~A~aVIiltdd 470 (745)
+||.||+++..
T Consensus 69 ~aDivvitag~ 79 (141)
T PF00056_consen 69 DADIVVITAGV 79 (141)
T ss_dssp TESEEEETTST
T ss_pred cccEEEEeccc
Confidence 88899998876
No 239
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.16 E-value=9.1 Score=39.29 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=53.6
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|. |..|..++++|...+ ..|++++++++..+...++... .+..+.++.+|.++.+.++++-
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG------ASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 357999998 557999999998754 5788888887655444332211 1224667889999988765531
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 124678887664
No 240
>PRK05717 oxidoreductase; Validated
Probab=77.11 E-value=10 Score=39.32 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=52.4
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C-
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g- 457 (745)
.+.++|.|.+ ..|..++++|.+.+ ..|++++.+++..+...++. +.++.++.+|.++.+.++++ .
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG------WQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 3568888875 46999999998754 57888887766555443321 23577889999998877553 1
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+.|.+|-++.
T Consensus 79 ~~~~g~id~li~~ag 93 (255)
T PRK05717 79 LGQFGRLDALVCNAA 93 (255)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577777664
No 241
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.09 E-value=8.4 Score=42.26 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++.++...++.. -.+.++.++.+|.++++.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G------~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG------AKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788898755 6899999998653 578888888877665544321 11346788999999999887651
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 124566666554
No 242
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=77.06 E-value=4.9 Score=46.22 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=47.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.++|+|+|+|+.|..+++.|.+. |..|++.+..+..+....... .++++.+ ..|.-.+ +.+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~~~~~~~~~------~~~~i~~--~~g~~~~------~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAPEGLAAQPL------LLEGIEV--ELGSHDD------EDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCccchhhhhh------hccCcee--ecCccch------hcccc
Confidence 57999999999999999999874 999999998765522111110 2344443 3343332 55677
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
+|.||.-.
T Consensus 70 ~d~vV~SP 77 (448)
T COG0771 70 FDLVVKSP 77 (448)
T ss_pred CCEEEECC
Confidence 78777644
No 243
>PRK00811 spermidine synthase; Provisional
Probab=77.04 E-value=7 Score=42.14 Aligned_cols=81 Identities=7% Similarity=0.028 Sum_probs=47.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC--CCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~--g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
.+++||++|+|.-+ +++++.++ ....+|+++|.++ +-.+...+. .+....+++-.+.+++||+.. .+++ .
T Consensus 76 ~p~~VL~iG~G~G~--~~~~~l~~-~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~-~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGG--TLREVLKH-PSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE-T 147 (283)
T ss_pred CCCEEEEEecCchH--HHHHHHcC-CCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-C
Confidence 46899999998743 23333333 2345899999764 333332221 000112234456678999865 5554 4
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
-++||.||+=.
T Consensus 148 ~~~yDvIi~D~ 158 (283)
T PRK00811 148 ENSFDVIIVDS 158 (283)
T ss_pred CCcccEEEECC
Confidence 56899999843
No 244
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.82 E-value=7.8 Score=39.18 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=51.3
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|. |..|..++++|.+.+ ..|++++++++..++..++. ....+.++.+|..+.+.++++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG------ARVALIGRGAAPLSQTLPGV----PADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC------CeEEEEeCChHhHHHHHHHH----hhcCceEEEeecCCHHHHHHHHHHHH
Confidence 46888886 557899999998653 57889988876555443322 1234567778999988876541
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 125677776654
No 245
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=76.81 E-value=12 Score=38.51 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=52.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc----
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e---- 717 (745)
.++++|.|+ |.+|..++++|.+ .|.+|.++...+..+-.+.+.+ +. ..+..+.+|.+|.+.+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~---~G~~vi~~~r~~~~~~~~~~~~-------~~-~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAE---AGADIVGAGRSEPSETQQQVEA-------LG-RRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHh-------cC-CceEEEECCCCCHHHHHHHHHH
Confidence 468999998 6789999999976 4889999886432222233332 11 224468899999988762
Q ss_pred --CCCCCcceEEEec
Q 004558 718 --LPLETFDSMSHWK 730 (745)
Q Consensus 718 --~~I~~~DavIilT 730 (745)
+.....|.+|-.+
T Consensus 74 ~~~~~~~~d~li~~a 88 (248)
T TIGR01832 74 AVEEFGHIDILVNNA 88 (248)
T ss_pred HHHHcCCCCEEEECC
Confidence 2235689888765
No 246
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=76.76 E-value=5.8 Score=41.48 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=61.0
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEE-EEcC----------ChHHHHHHHHhhhcccCCccEEEEEeCCCC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV-LAER----------DKEEMEMDIAKLEFDFMGTSVICRSGSPLI 449 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVV-LiD~----------d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~ 449 (745)
...+++|.|+|.+|..+++.|.+.+ ..|+ +.|. |.+++.+..++.. ... .+-.+....
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g------~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g-~l~----~~~~~~~~~ 98 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG------AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHG-SVL----GFPGAERIT 98 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCeEECCCCCCHHHHHHHHHhcC-Ccc----cCCCceecC
Confidence 3579999999999999999998753 4455 8888 7766655433211 000 000011112
Q ss_pred HHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCC----CCHHHHHHcCC
Q 004558 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDL----DNEPLVKLVGG 516 (745)
Q Consensus 450 ~e~L~rAgI~~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~----e~~~~l~~aGa 516 (745)
.+.+... +||.+|=++... .-+.+|+ .++ ++++|++--|. +..+.|+.-|+
T Consensus 99 ~~~i~~~---~~Dvlip~a~~~---~i~~~~~------~~l----~a~~I~egAN~~~t~~a~~~L~~rGi 153 (227)
T cd01076 99 NEELLEL---DCDILIPAALEN---QITADNA------DRI----KAKIIVEAANGPTTPEADEILHERGV 153 (227)
T ss_pred Cccceee---cccEEEecCccC---ccCHHHH------hhc----eeeEEEeCCCCCCCHHHHHHHHHCCC
Confidence 2223222 788888887431 1233332 222 25688887654 33455666664
No 247
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=76.70 E-value=8.9 Score=39.88 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=47.0
Q ss_pred eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 384 HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
.++|.|.+. .|..++++|..... ..+..|+++.++++.++...+++.....+.++.++.+|.++++.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~--~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~ 73 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLK--SPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQL 73 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhc--cCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHH
Confidence 478888876 58889999975210 123678888888877776654432111234677888999988876653
No 248
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=76.65 E-value=4.3 Score=43.59 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHhhcCCC--CeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcceEE
Q 004558 650 GWRRDIDDMIMVLEAFLAPG--SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMS 727 (745)
Q Consensus 650 Gwg~~g~~l~~~L~~~~~~g--~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~DavI 727 (745)
|.|-.|..++++|-+. | .+|.+++..+.....+.+. .++... ++.||.+|++.|+++ ++.+|.|+
T Consensus 5 gsGflG~~iv~~Ll~~---g~~~~Vr~~d~~~~~~~~~~~~-------~~~~~~--~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---GYIYEVRVLDRSPPPKFLKDLQ-------KSGVKE--YIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred CCcHHHHHHHHHHHHC---CCceEEEEcccccccccchhhh-------ccccee--EEEeccccHHHHHHH-hcCCceEE
Confidence 4588999999999763 6 7888888654332212221 222222 589999999999997 88999999
Q ss_pred Eec
Q 004558 728 HWK 730 (745)
Q Consensus 728 ilT 730 (745)
-+.
T Consensus 72 H~A 74 (280)
T PF01073_consen 72 HTA 74 (280)
T ss_pred EeC
Confidence 885
No 249
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.53 E-value=25 Score=38.25 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=42.6
Q ss_pred ccCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 381 ~k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
..+-++|.|+|. .|..++.||...+ ..+++.|-+++..++-.++... .+ .+....-|.++.+.+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg------~~~vl~Din~~~~~etv~~~~~--~g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG------AKLVLWDINKQGNEETVKEIRK--IG-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC------CeEEEEeccccchHHHHHHHHh--cC-ceeEEEecCCCHHHHHH
Confidence 456788888887 5888999998643 5788888887655554332210 02 35666666666666544
No 250
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=76.49 E-value=6 Score=41.94 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=50.4
Q ss_pred eEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 384 HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~--e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
+|+|.|+ |..|..++++|...+. ...|++++... ...+. ++... ...++.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 4889997 5679999999987531 24566666432 11111 11110 123577899999999998876 333
Q ss_pred --ccEEEEecCC
Q 004558 461 --ARAIIVLASD 470 (745)
Q Consensus 461 --A~aVIiltdd 470 (745)
+|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 8999988854
No 251
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.40 E-value=8.4 Score=42.35 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=56.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
..+++|.|.+. .|..++++|...+ ..|++++++++.+++..++.. . .+.++.++..|.++++.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G------~~Vvl~~R~~~~l~~~~~~~~-~-~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG------ARLVLAARDEEALQAVAEECR-A-LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHH-h-cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45889999864 6899999998753 678889998877766544321 1 1346778889999988877642
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 134577777664
No 252
>PRK06179 short chain dehydrogenase; Provisional
Probab=76.37 E-value=4.6 Score=42.23 Aligned_cols=73 Identities=15% Similarity=-0.012 Sum_probs=52.2
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
...++|.|.+. .|..++++|...+ ..|++++++++..+. ..++.++.+|.++++.++++=
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG------YRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHH
Confidence 35788998765 6889999998643 678888888755332 135778999999999887751
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|..+.-
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 1245788877754
No 253
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.14 E-value=6.5 Score=39.99 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=52.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCC-ceEEEEEcCcCCHhhHhcC--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMN-IKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~-~~V~~i~GD~td~~~L~e~-- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+.. ..+..+.+|.+|.+.+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~---~g~~V~~~~r~~--~~~~~~~~------~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLA---EGYKVAITARDQ--KELEEAAA------ELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---CCCEEEEeeCCH--HHHHHHHH------HHhccCcEEEEEccCCCHHHHHHHHH
Confidence 368999997 7899999999975 488999988653 44444332 1111 2345688999999877541
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 75 ~~~~~~~~~d~vi~~a 90 (237)
T PRK07326 75 AIVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124678888765
No 254
>PRK09135 pteridine reductase; Provisional
Probab=76.10 E-value=12 Score=38.19 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=51.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d-~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI- 458 (745)
..+++|.|.+. .|..++++|...+ ..|+++++. ++..+.....+ .+.....+.++.+|.++++.++++--
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG------YRVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36899999765 6999999998643 577777764 33333322111 01112357788999999988776421
Q ss_pred -----ccccEEEEecC
Q 004558 459 -----SKARAIIVLAS 469 (745)
Q Consensus 459 -----~~A~aVIiltd 469 (745)
...|.+|-++.
T Consensus 79 ~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 79 CVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24678887765
No 255
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.04 E-value=9.8 Score=39.62 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=55.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
...++|.|.+. .|..++++|.+.+ ..|++++++++..+....+.. .+.++.++.+|.++++.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG------ARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788998754 6899999998643 678888988877666544321 1336788899999988766531
Q ss_pred --cccccEEEEecCC
Q 004558 458 --VSKARAIIVLASD 470 (745)
Q Consensus 458 --I~~A~aVIiltdd 470 (745)
....|.+|..+..
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 2356788777643
No 256
>PRK08264 short chain dehydrogenase; Validated
Probab=75.95 E-value=8.3 Score=39.32 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~-iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (745)
.++++|.|. |..|..++++|...+ . .|+++.++++..+. .+.++.++.+|..+.+.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG------AAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------cccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 457899986 457999999998643 4 78888887765432 1346889999999998877642
Q ss_pred cccccEEEEecCC
Q 004558 458 VSKARAIIVLASD 470 (745)
Q Consensus 458 I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346777776643
No 257
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=75.86 E-value=6.1 Score=38.01 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=37.6
Q ss_pred EEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcce
Q 004558 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 725 (745)
Q Consensus 646 ILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~Da 725 (745)
++|+|.|.++..+++..... |.+|++++..+ | .+++..- +...+ ..+.++...+...++
T Consensus 1 L~I~GaG~va~al~~la~~l---g~~v~v~d~r~--e-------------~~~~~~~-~~~~~--~~~~~~~~~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL---GFRVTVVDPRP--E-------------RFPEADE-VICIP--PDDILEDLEIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC---TEEEEEEES-C--C-------------C-TTSSE-EECSH--HHHHHHHC-S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhC---CCEEEEEcCCc--c-------------ccCCCCc-cEecC--hHHHHhccCCCCCeE
Confidence 57999999999999988764 99999999753 1 2333321 22233 244456678888888
Q ss_pred EEEec
Q 004558 726 MSHWK 730 (745)
Q Consensus 726 vIilT 730 (745)
| ++|
T Consensus 60 V-v~t 63 (136)
T PF13478_consen 60 V-VMT 63 (136)
T ss_dssp E-E--
T ss_pred E-EEc
Confidence 7 577
No 258
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=75.72 E-value=5.8 Score=42.50 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=45.6
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
..||-|+|.|++|..+++.|.+. .++.++..+.. ++.++++.+++ ++.... -..+.+.|. .+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~d-r~~~~a~~~a~------~~g~~~------~~~~~eell----~~ 67 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAV-RDPQRHADFIW------GLRRPP------PVVPLDQLA----TH 67 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEEC-CCHHHHHHHHH------hcCCCc------ccCCHHHHh----cC
Confidence 35899999999999999999752 25778775543 35677777765 221111 113444443 34
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
.|+|++++
T Consensus 68 ~D~Vvi~t 75 (271)
T PRK13302 68 ADIVVEAA 75 (271)
T ss_pred CCEEEECC
Confidence 68888887
No 259
>PRK07478 short chain dehydrogenase; Provisional
Probab=75.63 E-value=11 Score=39.07 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=54.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|.+. .|..++++|...+ ..|+++.++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREG------AKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4788888765 6899999998754 5688888888776665443211 1335778889999988766541
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+-|.+|-.+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124577776664
No 260
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=75.59 E-value=10 Score=40.83 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=52.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCc-hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~-~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.++|+|.|+ |-+|..+++.|.+ .|.+|.++..++. .++.+.+.... ....+ +..++||.+|.+.++++ +
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~--~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLL---RGYTVKATVRDLTDRKKTEHLLALD---GAKER--LKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEECCCcchHHHHHHHhcc---CCCCc--eEEEecCCCCcchHHHH-H
Confidence 468999997 8999999999976 4888886654332 12333222100 01123 44578999999988775 5
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
+..|.||-++
T Consensus 76 ~~~d~vih~A 85 (322)
T PLN02986 76 EGCDAVFHTA 85 (322)
T ss_pred hCCCEEEEeC
Confidence 5689998887
No 261
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=75.59 E-value=8.1 Score=42.88 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCC-HHHHHHHHHHhhhcCCCCCC---c-CCcc---ChhhhhHHHHhH-HHHHHH
Q 004558 289 LALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNHAD---R-VGTG---PRIVSVSISSGG-MLIFAM 356 (745)
Q Consensus 289 l~L~~~~l~liligt~~~~~ie~~s-~~dA~y~~~~tvTTvGygd~---~-~t~~---gRi~~v~lil~G-i~ifa~ 356 (745)
..++++.++++++++..+...+... +.++++-++..+.|+|.+-. + -+.. ++++.+++|+.| +-+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~ 345 (354)
T PF02386_consen 269 FAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPV 345 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHH
Confidence 3444445555666666665555433 69999999999999987432 2 2344 788877777766 444443
No 262
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=75.47 E-value=16 Score=37.16 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.++++|.|.+. .|..+++.|.+.+ ..|++.+++++.++...... +.++.++.+|.++.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQG------AIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45889998654 6899999998653 57777888777666554322 23577888999999888765
Q ss_pred --CcccccEEEEecCC
Q 004558 457 --SVSKARAIIVLASD 470 (745)
Q Consensus 457 --gI~~A~aVIiltdd 470 (745)
...+.|.+|-++..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12356888877653
No 263
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.36 E-value=31 Score=35.23 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=29.4
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d 420 (745)
.+.+|+|+|.|..|..+++.|...+- ..++++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCC
Confidence 46799999999999999999998653 367888877
No 264
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.20 E-value=11 Score=39.16 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=52.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCc-eEEEEEcCcCCHhhHhcC---
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNI-KLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~-~V~~i~GD~td~~~L~e~--- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+ .++.. .+..+.+|.+|++.+++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYAR---QGATLGLVARR--TDALQAFAA------RLPKAARVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hcccCCeeEEEEcCCCCHHHHHHHHHH
Confidence 58999997 6789999999975 48899999864 345444443 12111 455789999998877542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 72 ~~~~~g~id~lv~~a 86 (257)
T PRK07024 72 FIAAHGLPDVVIANA 86 (257)
T ss_pred HHHhCCCCCEEEECC
Confidence 123468888765
No 265
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=75.17 E-value=7.2 Score=43.92 Aligned_cols=78 Identities=12% Similarity=-0.006 Sum_probs=52.3
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHH----HHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHh
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER----EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er----~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~ 716 (745)
...+|+|.|+ |.+|..++++|.+ .|.+|+++...+..-. .+.+.+ ..+++ .++.||.+|.+.++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~---~G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~v--~~v~~Dl~d~~~l~ 127 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR---RGYNVVAVAREKSGIRGKNGKEDTKK------ELPGA--EVVFGDVTDADSLR 127 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEEechhhccccchhhHHhh------hcCCc--eEEEeeCCCHHHHH
Confidence 3458999998 8999999999975 4889999886432100 011111 12344 35889999999987
Q ss_pred cC--CCC-CcceEEEec
Q 004558 717 SL--PLE-TFDSMSHWK 730 (745)
Q Consensus 717 e~--~I~-~~DavIilT 730 (745)
+. ++. .+|.|+.+.
T Consensus 128 ~~~~~~~~~~D~Vi~~a 144 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCL 144 (390)
T ss_pred HHHHHhCCCCcEEEECC
Confidence 64 111 689998643
No 266
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.11 E-value=11 Score=39.29 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=54.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..+++.|...+ ..|++++++++..+...+.... .+.++.++.+|.++++.++++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG------ADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35688888775 6899999998643 5788888887766655443211 1345778899999998886641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+.|.+|-.+.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677776654
No 267
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=75.07 E-value=3.2 Score=41.22 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=31.5
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhc
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e 689 (745)
.++|.|+|||.-|...+.-|.+. |.+|.|-.......+.+.-++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~~s~s~~~A~~~ 47 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS---GVNVIVGLREGSASWEKAKAD 47 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-TTCHHHHHHHHT
T ss_pred CCEEEEECCChHHHHHHHHHHhC---CCCEEEEecCCCcCHHHHHHC
Confidence 47899999999999999999874 899998887543344444444
No 268
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.05 E-value=11 Score=38.58 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=53.5
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.+.++|.|. |..|..+++.|.+.+ ..|++++++++..+...++.. ..+.++.++..|.++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKG------AKLALIDLNQEKLEEAVAECG--ALGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357899998 667999999998643 568888988876665544321 0134577888998887766542
Q ss_pred --CcccccEEEEecC
Q 004558 457 --SVSKARAIIVLAS 469 (745)
Q Consensus 457 --gI~~A~aVIiltd 469 (745)
.....|.+|-.+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1134577777654
No 269
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.99 E-value=11 Score=39.86 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|.+. .|..++++|...+ ..|++++++++.++...+++.. .+.++.++..|.++++.++++-
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G------~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRG------ARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888665 6899999998653 5688888888776665443211 1335777888999988876641
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
..+-|.+|-.+.
T Consensus 79 ~~~g~id~li~nAg 92 (275)
T PRK05876 79 RLLGHVDVVFSNAG 92 (275)
T ss_pred HHcCCCCEEEECCC
Confidence 123466666554
No 270
>PRK07060 short chain dehydrogenase; Provisional
Probab=74.93 E-value=8.1 Score=39.46 Aligned_cols=76 Identities=16% Similarity=0.009 Sum_probs=53.0
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (745)
.+.++|.|.+ ..|..+++.|...+ +.|++++++++..++..+. .++.++.+|.++.+.++++- .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRG------ARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHh
Confidence 3579999984 57999999998643 5788888887766554332 13457889999988776641 2
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
...|.+|-.+..
T Consensus 76 ~~~d~vi~~ag~ 87 (245)
T PRK07060 76 GAFDGLVNCAGI 87 (245)
T ss_pred CCCCEEEECCCC
Confidence 346777776643
No 271
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=74.84 E-value=11 Score=38.60 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCc--hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~--~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+. .+..+.+.+ .+..+..+.+|.+|.+.+++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHH
Confidence 468999996 7889999999976 4889999886532 112222222 112355689999999877663
Q ss_pred -----CCCCcceEEEec
Q 004558 719 -----PLETFDSMSHWK 730 (745)
Q Consensus 719 -----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 75 ~~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 75 AAGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 123678888776
No 272
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=74.79 E-value=11 Score=38.72 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=52.8
Q ss_pred eEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc------
Q 004558 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (745)
Q Consensus 384 HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA------ 456 (745)
.++|.|.+ ..|..++++|.+.+ ..|++++++++..+...++.. ..+.++.++.+|.++++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDG------FAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 58899875 46899999998653 568888887766555443321 1234678889999998887664
Q ss_pred CcccccEEEEecC
Q 004558 457 SVSKARAIIVLAS 469 (745)
Q Consensus 457 gI~~A~aVIiltd 469 (745)
.....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 1224577777664
No 273
>PRK07806 short chain dehydrogenase; Provisional
Probab=74.64 E-value=11 Score=38.55 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=51.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhc--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLES-- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e-- 717 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++.... .++.+.+.+ .++ ...+..+.+|.+|.+.+++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~---~G~~V~~~~r~~-~~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAG---AGAHVVVNYRQK-APRANKVVA------EIEAAGGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHH---CCCEEEEEeCCc-hHhHHHHHH------HHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 368999998 7899999999965 488998876542 223333322 111 1234568899999987753
Q ss_pred ----CCCCCcceEEEec
Q 004558 718 ----LPLETFDSMSHWK 730 (745)
Q Consensus 718 ----~~I~~~DavIilT 730 (745)
......|.+|..+
T Consensus 76 ~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 76 DTAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHHhCCCCcEEEECC
Confidence 2234678877665
No 274
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.58 E-value=12 Score=40.42 Aligned_cols=80 Identities=10% Similarity=0.077 Sum_probs=52.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCe-EEEEecCCc-hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSE-LWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~-v~IIe~~p~-~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
.++++|+|.|..|..++..|.+. |.. |+|++..+. .+|.+.+++. +. ....... ....|..+.+.+++ .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~---G~~~V~I~~R~~~~~~~a~~l~~~-l~-~~~~~~~--~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALD---GAKEITIFNIKDDFYERAEQTAEK-IK-QEVPECI--VNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHHHHHH-Hh-hcCCCce--eEEechhhhhHHHh-hh
Confidence 46899999999999999988653 664 999986531 2566665540 00 0112222 23456677666654 36
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
+++|.+|-.|
T Consensus 198 ~~~DilINaT 207 (289)
T PRK12548 198 ASSDILVNAT 207 (289)
T ss_pred ccCCEEEEeC
Confidence 7789999888
No 275
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=74.57 E-value=22 Score=41.92 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
...|+|.|+| ..|.++++|+...+. ..+++.++|+-.+..+..++...+...++.++.||..|.+-++++ .++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~-~~~ 323 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERA-MEG 323 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHH-Hhc
Confidence 4466677765 469999999998754 578888988866555444432223356788999999999999987 333
Q ss_pred --ccEEEEecCCC-------CCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCC
Q 004558 461 --ARAIIVLASDE-------NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD 506 (745)
Q Consensus 461 --A~aVIiltdd~-------~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e 506 (745)
-|.|+=.+--. ++.+.=..|+.-+..+-+.....++..++-+...+
T Consensus 324 ~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 324 HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc
Confidence 67776554331 23333445665443332211111234555555543
No 276
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.56 E-value=24 Score=38.67 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=46.7
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCC-ccEEEEEeCCCCHHHHhccCccc
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMG-TSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~--~~~~-~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
+|.|+|.|.+|..++-.|...+ -...++|+|.+++..+....++.+ .+.. .++....| +.+ .+.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~----~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~-----~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG----LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYD-----DCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHH-----HhCC
Confidence 4889999999999998887543 224789999876544433333211 1221 23433333 333 3557
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
||.||+.+..
T Consensus 69 aDivvitaG~ 78 (307)
T cd05290 69 ADIIVITAGP 78 (307)
T ss_pred CCEEEECCCC
Confidence 8889998876
No 277
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.48 E-value=12 Score=38.68 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=53.4
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..++..++... .+.++.++.+|.++++.++++-
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G------~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYG------AEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHHHHHH
Confidence 34688888765 6999999998643 6788999887766655443211 1235667788888888776641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 123577776664
No 278
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=74.30 E-value=4.5 Score=46.40 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=30.4
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
...++|+|+|+|..|...+..|.+ .|.+|++++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~---~g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR---KGYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh---CCCeEEEEccC
Confidence 456799999999999999999976 48999999965
No 279
>PLN02253 xanthoxin dehydrogenase
Probab=74.29 E-value=12 Score=39.43 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=54.1
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..++..++.. .+.++.++.+|.++++.++++--
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G------~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHG------AKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHH
Confidence 34688888765 6889999998653 678888887765555443321 12367889999999988776411
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
.+.|.+|-++.
T Consensus 89 ~~~~g~id~li~~Ag 103 (280)
T PLN02253 89 VDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHhCCCCEEEECCC
Confidence 25677777664
No 280
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=74.25 E-value=9 Score=42.08 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=53.2
Q ss_pred cCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 004558 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 382 k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~---~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (745)
.++|+|.|+ |-.|..++++|...+ ..|+.+++..........+.. ......++.++.||..+.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN------QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC------CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-
Confidence 358999997 667999999999754 567777764322111111110 000112577899999999888765
Q ss_pred cccccEEEEecCC
Q 004558 458 VSKARAIIVLASD 470 (745)
Q Consensus 458 I~~A~aVIiltdd 470 (745)
+++++.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 4568998888754
No 281
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=74.16 E-value=9.3 Score=40.97 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhcCCCCcCCCCCce-EEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIK-LVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~-V~~i~GD~td~~~L~e~~ 719 (745)
..++++|+|.|..|..++..|... | .+|++++.. .++.+.+++ .+.... +. + + .+ + ...
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~---g~~~V~v~~R~--~~~a~~l~~------~~~~~~~~~-~--~-~~---~-~~~ 182 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDL---GVAEITIVNRT--VERAEELAK------LFGALGKAE-L--D-LE---L-QEE 182 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEEeCC--HHHHHHHHH------Hhhhcccee-e--c-cc---c-hhc
Confidence 456899999999999999999753 7 789999964 578877775 222110 10 1 0 01 1 234
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
+.++|.||..|
T Consensus 183 ~~~~DivInaT 193 (278)
T PRK00258 183 LADFDLIINAT 193 (278)
T ss_pred cccCCEEEECC
Confidence 67899999988
No 282
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=74.14 E-value=11 Score=40.65 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=51.3
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHH---HHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~---le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
..|+|.|+. -.|.+++++|...+ +.|+++.++.+. ++...... . ...++.++.||.++++.+.++ +
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG------YTVKATVRDLTDRKKTEHLLALD--G-AKERLKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCCcchHHHHHHHhcc--C-CCCceEEEecCCCCcchHHHH-H
Confidence 578999864 56999999998754 456655444432 22221100 0 123578899999999988776 3
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
+.+|.||-++..
T Consensus 76 ~~~d~vih~A~~ 87 (322)
T PLN02986 76 EGCDAVFHTASP 87 (322)
T ss_pred hCCCEEEEeCCC
Confidence 468999988864
No 283
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.99 E-value=10 Score=39.75 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=52.0
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCeEEEEecC-CchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-
Q 004558 643 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 717 (745)
Q Consensus 643 ~~rILI~Gw---g~~g~~l~~~L~~~~~~g~~v~IIe~~-p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e- 717 (745)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++... .++++.+.+.+ +++...+..+..|.+|++..++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~---~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHN---AGAKLVFTYAGERLEKEVRELAD------TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEecCcccchHHHHHHHH------HcCCCceEEEecCCCCHHHHHHH
Confidence 468999998 4899999999976 48899887532 22344444543 2222334467899999987653
Q ss_pred -----CCCCCcceEEEe
Q 004558 718 -----LPLETFDSMSHW 729 (745)
Q Consensus 718 -----~~I~~~DavIil 729 (745)
+.....|.+|..
T Consensus 78 ~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 78 FETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHhCCCccEEEEC
Confidence 223567877754
No 284
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=73.95 E-value=15 Score=44.93 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhhhcCCCC-CCcCCccChhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 004558 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (745)
Q Consensus 312 ~s~~dA~y~~~~tvTTvGyg-d~~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i~~~ 368 (745)
.++..|+|..|..+..---- +.|.++.+|+.+.+|.++++++++.-++-++.++.+.
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999888777532211 2257788999999999999999887777776655543
No 285
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=73.91 E-value=13 Score=40.28 Aligned_cols=80 Identities=20% Similarity=0.087 Sum_probs=55.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...+++. ..+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G------~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRG------WHVIMACRNLKKAEAAAQELG--IPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHhh--ccCCceEEEEecCCCHHHHHHHHHHH
Confidence 35788998765 6899999998653 578888888777665544331 113357889999999988776422
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
..-|.+|-.+.
T Consensus 78 ~~~~~~iD~li~nAg 92 (322)
T PRK07453 78 RALGKPLDALVCNAA 92 (322)
T ss_pred HHhCCCccEEEECCc
Confidence 24677777664
No 286
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.91 E-value=8.7 Score=42.00 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=52.2
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEc--CcCCHhhHhcCCCCC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG--NAVIRRHLESLPLET 722 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~G--D~td~~~L~e~~I~~ 722 (745)
||.|+|.|-+|.+++-.|.+. |.+|+++-.. ++.+.+.+.|+ .+....| +......-..+....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~---g~~V~~~~R~---~~~~~l~~~GL--------~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA---GHDVTLLVRS---RRLEALKKKGL--------RIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC---CCeEEEEecH---HHHHHHHhCCe--------EEecCCCccccccccccChhhcCC
Confidence 799999999999999999874 6788888853 34566665443 2222222 222333334455669
Q ss_pred cceEEEec---Ccchhhhh
Q 004558 723 FDSMSHWK---TRLCILTH 738 (745)
Q Consensus 723 ~DavIilT---d~~ni~~~ 738 (745)
+|.+|+.+ |-..++..
T Consensus 68 ~Dlviv~vKa~q~~~al~~ 86 (307)
T COG1893 68 ADLVIVTVKAYQLEEALPS 86 (307)
T ss_pred CCEEEEEeccccHHHHHHH
Confidence 99999998 54455443
No 287
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=73.72 E-value=7.9 Score=43.25 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=48.6
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~ 723 (745)
++|+|+|+|..|..|+....+. |.++.+++.+++. -+..+++ .++.+|..|.+.|++. ++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~~~~~-pa~~~ad-------------~~~~~~~~D~~~l~~~-a~~~ 64 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDPDPDS-PAAQVAD-------------EVIVADYDDVAALREL-AEQC 64 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC-chhHhCc-------------eEEecCCCCHHHHHHH-HhcC
Confidence 4799999999999888877654 9999999976533 2333332 2467999999999886 5577
Q ss_pred ceE
Q 004558 724 DSM 726 (745)
Q Consensus 724 Dav 726 (745)
|.+
T Consensus 65 dvi 67 (372)
T PRK06019 65 DVI 67 (372)
T ss_pred CEE
Confidence 865
No 288
>PRK10750 potassium transporter; Provisional
Probab=73.59 E-value=97 Score=36.19 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCC------c-CCccChhhhhHHHHhH-HHHHHHHHH
Q 004558 289 LALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD------R-VGTGPRIVSVSISSGG-MLIFAMMLG 359 (745)
Q Consensus 289 l~L~~~~l~liligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~------~-~t~~gRi~~v~lil~G-i~ifa~lig 359 (745)
+..+++.+++++++++++ ..++.++.+|+--+..++.++|.+-. + -+..++++..+.|+.| +-++++++.
T Consensus 398 ~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 398 WGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344445555555555 66788999999999999998877532 2 3456898888777777 556655444
No 289
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=73.52 E-value=5.1 Score=46.91 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCC-cCCccChhhhhHHHHhHHHHHHHHHHHHHHHH
Q 004558 312 SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAI 365 (745)
Q Consensus 312 ~s~~dA~y~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~lig~It~~i 365 (745)
.++..|.||+|-.+...|-|+. |.+...|++.++|.=+.|+++|..++-++.++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 6899999999999999999987 67888999999887777777766666555543
No 290
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.51 E-value=11 Score=39.33 Aligned_cols=81 Identities=20% Similarity=0.107 Sum_probs=52.0
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHH-HHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~-le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--- 456 (745)
.++++|.|++. .|..++++|...+ +..|++++++++. .+...++... ..+.++.++.+|.++++..+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~g-----g~~V~~~~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNA-----PARVVLAALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-----CCeEEEEeCCcchhHHHHHHHHHh-cCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 5889999998642 2577888877664 5544433211 1123688899999988764432
Q ss_pred --CcccccEEEEec
Q 004558 457 --SVSKARAIIVLA 468 (745)
Q Consensus 457 --gI~~A~aVIilt 468 (745)
.-.+-|.+|..+
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 013567777654
No 291
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.31 E-value=8.3 Score=36.88 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=53.0
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L--~~~~V~~i~GD~td~~~L~e~-- 718 (745)
|.++|.|+ +.+|..+++.|.+. .+..|.++...++.++.+.+.+ .+ ++..+..++.|.++++.+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~------~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQ------ELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHH------HHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccc------ccccccccccccccccccccccccccc
Confidence 46899997 57899999999864 2456677665434566665543 12 235566788999999887652
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 73 ~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 73 EVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHSSESEEEEEC
T ss_pred cccccccccccccccc
Confidence 233677777665
No 292
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.27 E-value=6.7 Score=42.40 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=33.5
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 690 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~ 690 (745)
+|.|+|.|..|..++..|.+ .|.+|++++.. .++.+.+.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~--~~~~~~~~~~ 43 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR---NGHDVTLWARD--PEQAAEINAD 43 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHHc
Confidence 69999999999999999976 48899999864 4666666653
No 293
>PRK06057 short chain dehydrogenase; Provisional
Probab=73.23 E-value=9 Score=39.67 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=50.5
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
.++++|.|.+. .|..++++|.+.+ ..|++++++++..+...++. ...++.+|.++++.++++--
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEG------ATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHH
Confidence 35789999854 6899999998653 67888888876665543322 12467788888887665321
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
.+.|.+|-.+.
T Consensus 74 ~~~~~~id~vi~~ag 88 (255)
T PRK06057 74 AETYGSVDIAFNNAG 88 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 24577766654
No 294
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.14 E-value=14 Score=37.73 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=55.3
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|.+.+ ..|++++++.+..+...+... . .+.++.++.+|.++++.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEG------AKVAVFDLNREAAEKVAADIR-A-KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHHH-h-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35788998754 6899999998753 578888888766554433221 0 1345888999999998887751
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|..+.
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 135688887775
No 295
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.11 E-value=16 Score=34.78 Aligned_cols=73 Identities=19% Similarity=0.115 Sum_probs=44.5
Q ss_pred EEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhccc---CCccEEEEEeCCCCHHHHhccCcccc
Q 004558 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF---MGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 385 IVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~---~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
|.|+|.|..|..++..|...+ +.|.++.+.+ ..+.. ++.+... .+.......-....+ ....+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g------~~V~l~~r~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG------HDVTLVSRSP-RLEAI-KEQGLTITGPDGDETVQPPIVISAP----SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT------CEEEEEESHH-HHHHH-HHHCEEEEETTEEEEEEEEEEESSH----GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCC------CceEEEEccc-cHHhh-hheeEEEEecccceecccccccCcc----hhccCCC
Confidence 689999999999999998754 7899999877 55553 2221111 111111111111112 4466789
Q ss_pred cEEEEecC
Q 004558 462 RAIIVLAS 469 (745)
Q Consensus 462 ~aVIiltd 469 (745)
|.+|+++.
T Consensus 69 D~viv~vK 76 (151)
T PF02558_consen 69 DLVIVAVK 76 (151)
T ss_dssp SEEEE-SS
T ss_pred cEEEEEec
Confidence 99999985
No 296
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.10 E-value=15 Score=33.41 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=45.3
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCcc
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~D 724 (745)
||.|+|.|..|...+..+.+. .++.++.-+-+ ++.++.+..++ .+ ++.+ . +|.+.|.+.. +.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d-~~~~~~~~~~~------~~-~~~~---~---~~~~~ll~~~--~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCD-PDPERAEAFAE------KY-GIPV---Y---TDLEELLADE--DVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEEC-SSHHHHHHHHH------HT-TSEE---E---SSHHHHHHHT--TES
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEe-CCHHHHHHHHH------Hh-cccc---h---hHHHHHHHhh--cCC
Confidence 789999999999998888763 46677764443 45677777654 11 2221 1 4444444322 799
Q ss_pred eEEEec
Q 004558 725 SMSHWK 730 (745)
Q Consensus 725 avIilT 730 (745)
++++.|
T Consensus 65 ~V~I~t 70 (120)
T PF01408_consen 65 AVIIAT 70 (120)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 999999
No 297
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=73.09 E-value=12 Score=41.56 Aligned_cols=73 Identities=8% Similarity=-0.019 Sum_probs=51.7
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..++|+|.|+ |-+|..+++.|.+ .|.+|+.++..++ ..+.+. .+ .+.++.||.+|.+.+.+. +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~---~G~~V~~v~r~~~----~~~~~~-----~~---~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA---EGHYIIASDWKKN----EHMSED-----MF---CHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh---CCCEEEEEEeccc----cccccc-----cc---cceEEECCCCCHHHHHHH-H
Confidence 4568999999 9999999999976 4889999985321 111110 11 123467999999888765 4
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.||-+.
T Consensus 84 ~~~D~Vih~A 93 (370)
T PLN02695 84 KGVDHVFNLA 93 (370)
T ss_pred hCCCEEEEcc
Confidence 5689988886
No 298
>PLN02494 adenosylhomocysteinase
Probab=73.06 E-value=5.6 Score=45.96 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=30.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
.-++++|+|+|.+|..+++.+..+ |..|.+++.+|
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~---Ga~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAA---GARVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCc
Confidence 457999999999999999999765 88999998764
No 299
>PRK08589 short chain dehydrogenase; Validated
Probab=72.93 E-value=13 Score=39.10 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..++++|...+ ..|++++++ +..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G------~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEG------AYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 35788999865 6899999998754 678888887 555554443311 1335788899999988776531
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 77 ~~~~g~id~li~~Ag 91 (272)
T PRK08589 77 KEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHcCCcCEEEECCC
Confidence 124577776654
No 300
>PRK04457 spermidine synthase; Provisional
Probab=72.74 E-value=17 Score=38.72 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
..+++|+.+|.| +-.++..+.++ .++.+++.+|.+| +-.+...+.--....-+++.+ ++||+. +.+++.+
T Consensus 65 ~~~~~vL~IG~G--~G~l~~~l~~~-~p~~~v~~VEidp--~vi~~A~~~f~~~~~~~rv~v--~~~Da~--~~l~~~~- 134 (262)
T PRK04457 65 PRPQHILQIGLG--GGSLAKFIYTY-LPDTRQTAVEINP--QVIAVARNHFELPENGERFEV--IEADGA--EYIAVHR- 134 (262)
T ss_pred CCCCEEEEECCC--HhHHHHHHHHh-CCCCeEEEEECCH--HHHHHHHHHcCCCCCCCceEE--EECCHH--HHHHhCC-
Q ss_pred CCcceEEE
Q 004558 721 ETFDSMSH 728 (745)
Q Consensus 721 ~~~DavIi 728 (745)
+.||.|++
T Consensus 135 ~~yD~I~~ 142 (262)
T PRK04457 135 HSTDVILV 142 (262)
T ss_pred CCCCEEEE
No 301
>PLN02583 cinnamoyl-CoA reductase
Probab=72.71 E-value=16 Score=39.23 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=50.7
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d--~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
.++++|.|++ -.|..++++|...+ +.|+++.++ +...+..+.... ..+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G------~~V~~~~R~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG------YTVHAAVQKNGETEIEKEIRGLS--CEEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC------CEEEEEEcCchhhhHHHHHHhcc--cCCCceEEEEecCCCHHHHHHH-H
Confidence 4589999975 46999999998754 567666553 222222222210 0123578899999999988765 4
Q ss_pred ccccEEEEec
Q 004558 459 SKARAIIVLA 468 (745)
Q Consensus 459 ~~A~aVIilt 468 (745)
..+++++-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5678877543
No 302
>PRK08219 short chain dehydrogenase; Provisional
Probab=72.60 E-value=13 Score=37.44 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=51.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 720 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~I 720 (745)
++++|.|+ |.+|..+++.|.+ . .+|.++... .+..+.+.+ .++++ ..+++|.+|.+.+++. .+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~---~-~~V~~~~r~--~~~~~~~~~------~~~~~--~~~~~D~~~~~~~~~~~~~~ 69 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP---T-HTLLLGGRP--AERLDELAA------ELPGA--TPFPVDLTDPEAIAAAVEQL 69 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh---h-CCEEEEeCC--HHHHHHHHH------Hhccc--eEEecCCCCHHHHHHHHHhc
Confidence 57999998 6789999999975 3 678888864 344444432 22333 3578999999888762 23
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
+..|.+|-..
T Consensus 70 ~~id~vi~~a 79 (227)
T PRK08219 70 GRLDVLVHNA 79 (227)
T ss_pred CCCCEEEECC
Confidence 4688988776
No 303
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.60 E-value=11 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=18.7
Q ss_pred eEEEEccc-chHHHHHHHHHhhcCCCCeEEEE
Q 004558 645 KILFCGWR-RDIDDMIMVLEAFLAPGSELWML 675 (745)
Q Consensus 645 rILI~Gwg-~~g~~l~~~L~~~~~~g~~v~II 675 (745)
+|||+|+. +....+-+.++++ |.+....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~---G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKY---GGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHc---CCEEEEE
Confidence 58999984 4445555666654 7777766
No 304
>PRK05693 short chain dehydrogenase; Provisional
Probab=72.59 E-value=11 Score=39.61 Aligned_cols=74 Identities=20% Similarity=0.075 Sum_probs=52.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
+.++|.|++. .|..++++|...+ ..|++++++++..+.... .++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG------YEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 4688999755 6889999997643 678888888776655422 2456788999998887654
Q ss_pred -CcccccEEEEecCC
Q 004558 457 -SVSKARAIIVLASD 470 (745)
Q Consensus 457 -gI~~A~aVIiltdd 470 (745)
...+.|.+|-.+..
T Consensus 68 ~~~~~id~vi~~ag~ 82 (274)
T PRK05693 68 AEHGGLDVLINNAGY 82 (274)
T ss_pred HhcCCCCEEEECCCC
Confidence 12456888887753
No 305
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=72.58 E-value=7.2 Score=41.71 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=45.6
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (745)
+|.|+|.|..|..++..|...+ +.|.++|.+++.++.+.+. +... -..++. + .+.+||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g------~~V~~~d~~~~~~~~a~~~--------g~~~--~~~~~~---~--~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG------HTVYGVSRRESTCERAIER--------GLVD--EASTDL---S--LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHC--------CCcc--cccCCH---h--HhcCCCE
Confidence 6899999999999999998653 6799999998877765431 1100 011111 1 2568999
Q ss_pred EEEecC
Q 004558 464 IIVLAS 469 (745)
Q Consensus 464 VIiltd 469 (745)
||++++
T Consensus 61 Vilavp 66 (279)
T PRK07417 61 VILALP 66 (279)
T ss_pred EEEcCC
Confidence 999985
No 306
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=72.32 E-value=10 Score=41.48 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=49.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcC-CHhhHhcCCCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAV-IRRHLESLPLE 721 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~t-d~~~L~e~~I~ 721 (745)
++|+|.|+ |-+|..+++.|.+. .|.+|+.++.. .++...+.. .++ +.+++||.+ +.+.+.++ +.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~--~~~~~~~~~-------~~~--~~~~~~Dl~~~~~~~~~~-~~ 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQ--TDRLGDLVN-------HPR--MHFFEGDITINKEWIEYH-VK 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCc--HHHHHHhcc-------CCC--eEEEeCCCCCCHHHHHHH-Hc
Confidence 47999998 99999999999642 36889988753 222222211 122 445789998 77777664 56
Q ss_pred CcceEEEe
Q 004558 722 TFDSMSHW 729 (745)
Q Consensus 722 ~~DavIil 729 (745)
.+|.||=+
T Consensus 68 ~~d~ViH~ 75 (347)
T PRK11908 68 KCDVILPL 75 (347)
T ss_pred CCCEEEEC
Confidence 78998854
No 307
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=72.21 E-value=9.8 Score=43.31 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=55.3
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
..+++|+|+|+.+.-+++.|...+- ..|+++.+..++.+++..++ + |.+...+.|... +.+|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-----~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~~~-l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-----KKITIANRTLERAEELAKKL-------G-----AEAVALEELLEA-LAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHHHh-hhhC
Confidence 4689999999999999999987542 57899999999988877653 1 445555555543 7799
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||..|..
T Consensus 240 DvVissTsa 248 (414)
T COG0373 240 DVVISSTSA 248 (414)
T ss_pred CEEEEecCC
Confidence 999999865
No 308
>PRK06953 short chain dehydrogenase; Provisional
Probab=72.17 E-value=20 Score=36.35 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=50.1
Q ss_pred eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc--
Q 004558 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV-- 458 (745)
Q Consensus 384 HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI-- 458 (745)
.++|.|.+. .|..++++|...+ ..|++++++++..+.... .++.++.+|.++.+.++++ .+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADG------WRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCC------CEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcC
Confidence 578888654 6899999998643 578888888766554321 2356789999999888774 12
Q ss_pred ccccEEEEecC
Q 004558 459 SKARAIIVLAS 469 (745)
Q Consensus 459 ~~A~aVIiltd 469 (745)
.+.+.+|-++.
T Consensus 69 ~~~d~vi~~ag 79 (222)
T PRK06953 69 EALDAAVYVAG 79 (222)
T ss_pred CCCCEEEECCC
Confidence 24677777654
No 309
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=72.03 E-value=6.1 Score=45.61 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
..++|+|+|+|..|...+..|... |.+|++++..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~---G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA---GVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecCC
Confidence 457999999999999999999763 89999999754
No 310
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.02 E-value=11 Score=39.60 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=52.0
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhc----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLES---- 717 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~-~~~V~~i~GD~td~~~L~e---- 717 (745)
+.++|.|+ |.+|..+++.|.+ .|..|.++...+ +.++.+.+.- .... +..+..+.+|.+|.+.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~~---~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 75 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK---KGYLVIATMRNP--EKQENLLSQA---TQLNLQQNIKVQQLDVTDQNSIHNFQLV 75 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh---CCCEEEEEeCCH--HHHHHHHHHH---HhcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 57899997 6889999999975 489999987643 3333332200 0011 2235568899999988764
Q ss_pred -CCCCCcceEEEec
Q 004558 718 -LPLETFDSMSHWK 730 (745)
Q Consensus 718 -~~I~~~DavIilT 730 (745)
......|.+|..+
T Consensus 76 ~~~~~~id~vv~~a 89 (280)
T PRK06914 76 LKEIGRIDLLVNNA 89 (280)
T ss_pred HHhcCCeeEEEECC
Confidence 1234568888876
No 311
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.00 E-value=11 Score=38.20 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=51.1
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++|+|.|+ |-+|..+++.|.+ .|.++.++...+ .++.+.+.+. + ...+..+..+.+|..|.+.+++.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~---~g~~v~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~v~~~~~~ 77 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLAR---AGADVVVHYRSD-EEAAEELVEA-V---EALGRRAQAVQADVTDKAALEAAVAA 77 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCeEEEEeCCC-HHHHHHHHHH-H---HhcCCceEEEECCcCCHHHHHHHHHH
Confidence 358999998 7889999999976 478877755432 3333333220 0 00122345688999999977642
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-++
T Consensus 78 ~~~~~~~id~vi~~a 92 (249)
T PRK12825 78 AVERFGRIDILVNNA 92 (249)
T ss_pred HHHHcCCCCEEEECC
Confidence 124679988765
No 312
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=71.97 E-value=13 Score=39.04 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=54.3
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAG------AKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35788888754 6899999998643 5788888887666555443211 1345788899999988776531
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 235677777664
No 313
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=71.95 E-value=35 Score=38.47 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhccCCCHHHHHHHHHHhhhcCCCCCCc
Q 004558 298 LIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR 334 (745)
Q Consensus 298 liligt~~~~~ie~~s~~dA~y~~~~tvTTvGygd~~ 334 (745)
+.+++++.|+..+..+++||++.++.+++|.|+.-.+
T Consensus 113 lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~ 149 (390)
T TIGR00933 113 GTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHS 149 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCC
Confidence 3344444444332289999999999999999996554
No 314
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=71.81 E-value=10 Score=42.26 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=45.9
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHH-HHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~-le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
-..+||||||..|.-++..|+..+ ..|++.|-||-. ++...+ +.+|. .+++| +..
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~G------A~ViVtEvDPI~AleA~Md-------Gf~V~----------~m~~A-a~~ 264 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMG------ARVIVTEVDPIRALEAAMD-------GFRVM----------TMEEA-AKT 264 (420)
T ss_pred CceEEEecccccchHHHHHhhcCC------CeEEEEecCchHHHHHhhc-------CcEEE----------EhHHh-hhc
Confidence 457899999999999999998654 789999999854 333222 22332 24443 567
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
||.+|..|.+
T Consensus 265 gDifiT~TGn 274 (420)
T COG0499 265 GDIFVTATGN 274 (420)
T ss_pred CCEEEEccCC
Confidence 8999998864
No 315
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.76 E-value=13 Score=38.69 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=41.7
Q ss_pred CeEEEEccC---ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 383 ~HIVI~G~g---~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
++++|.|.+ ..|..++++|.+.+ ..|+++.++. +.++.+++. ...++.++..|.++++..++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G------~~Vi~~~r~~-~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~ 72 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQG------ATVIYTYQND-RMKKSLQKL----VDEEDLLVECDVASDESIER 72 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCC------CEEEEecCch-HHHHHHHhh----ccCceeEEeCCCCCHHHHHH
Confidence 578888986 58999999998754 5688887763 333333322 12346677778888777655
No 316
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.74 E-value=8.9 Score=33.62 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=32.9
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEE-ecCCchHHHHHhhc
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTD 689 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~II-e~~p~~er~~~l~e 689 (745)
||-|+|.|+.|..|++.|.+.-....++.++ +. +.|+.+++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~ 44 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAK 44 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHH
Confidence 6889999999999999997641122899987 54 5688888765
No 317
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.74 E-value=14 Score=36.76 Aligned_cols=82 Identities=15% Similarity=0.032 Sum_probs=49.6
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCC----chHH------------HHHhhcCCCCcCCCCCceEEEEEc
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVP----EKER------------EKKLTDGGLDISGLMNIKLVHREG 707 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p----~~er------------~~~l~e~g~~~~~L~~~~V~~i~G 707 (745)
+|+|+|.|-.|..+++.|... |. ++++++.+. +-.| .+.+++. + ...-+++.+..+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~---Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~-l-~~lnp~v~i~~~~~ 75 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS---GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKEN-L-REINPFVKIEAINI 75 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHH-H-HHHCCCCEEEEEEe
Confidence 589999999999999999763 65 599999752 1111 1111110 0 00124566655555
Q ss_pred CcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 708 NAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 708 D~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
.... +.+++ -++++|.||..+|..
T Consensus 76 ~~~~-~~~~~-~l~~~DlVi~~~d~~ 99 (174)
T cd01487 76 KIDE-NNLEG-LFGDCDIVVEAFDNA 99 (174)
T ss_pred ecCh-hhHHH-HhcCCCEEEECCCCH
Confidence 5444 33333 367899999888543
No 318
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.71 E-value=9.4 Score=38.82 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=50.8
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCCc
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~~ 723 (745)
||.|+|. |+.|..++++.-. +|-+||-|-.+| .+.. .+++.+ .+++|.-|.+.| ...+..+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~---RGHeVTAivRn~--~K~~----------~~~~~~--i~q~Difd~~~~-a~~l~g~ 63 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALK---RGHEVTAIVRNA--SKLA----------ARQGVT--ILQKDIFDLTSL-ASDLAGH 63 (211)
T ss_pred eEEEEecCchhHHHHHHHHHh---CCCeeEEEEeCh--Hhcc----------ccccce--eecccccChhhh-HhhhcCC
Confidence 5666666 8999999998864 699999999764 2221 224444 489999999999 4559999
Q ss_pred ceEEEec
Q 004558 724 DSMSHWK 730 (745)
Q Consensus 724 DavIilT 730 (745)
|+||..-
T Consensus 64 DaVIsA~ 70 (211)
T COG2910 64 DAVISAF 70 (211)
T ss_pred ceEEEec
Confidence 9999754
No 319
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.65 E-value=8.9 Score=41.15 Aligned_cols=79 Identities=9% Similarity=0.051 Sum_probs=53.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. + ... +..+..+.+|.+|.+.+++.
T Consensus 40 ~k~vlItGasggIG~~la~~La~---~G~~Vi~~~R~--~~~l~~~~~~-l--~~~-~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFAR---RGATVVAVARR--EDLLDAVADR-I--TRA-GGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHH-H--Hhc-CCcEEEEEccCCCHHHHHHHHHH
Confidence 368999998 7889999999975 48899998864 3444444320 0 001 22345688999998866542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
..+..|.+|-.+
T Consensus 111 ~~~~~g~id~li~~A 125 (293)
T PRK05866 111 VEKRIGGVDILINNA 125 (293)
T ss_pred HHHHcCCCCEEEECC
Confidence 245778888765
No 320
>PRK07677 short chain dehydrogenase; Provisional
Probab=71.64 E-value=15 Score=37.89 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=52.6
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..++... .+.++.++.+|.++++.++++-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG------ANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888866 6889999998643 5788888887665554332210 1235778899999988876631
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
....|.+|-++.
T Consensus 74 ~~~~~id~lI~~ag 87 (252)
T PRK07677 74 EKFGRIDALINNAA 87 (252)
T ss_pred HHhCCccEEEECCC
Confidence 124577776653
No 321
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=71.62 E-value=15 Score=44.40 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=53.3
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 720 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-~I 720 (745)
.++|||.|+ |-+|..+++.|.+. ..+.+|..++..+..++.+.+... ...++ +.++.||.+|.+.+.+. ..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~~----~~~~~--v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNPS----KSSPN--FKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhhc----ccCCC--eEEEECCCCChHHHHHHHhh
Confidence 468999997 89999999999753 246788877743211222222110 01123 45688999999888753 34
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
...|.||-++
T Consensus 79 ~~~D~ViHlA 88 (668)
T PLN02260 79 EGIDTIMHFA 88 (668)
T ss_pred cCCCEEEECC
Confidence 6789999777
No 322
>PRK08263 short chain dehydrogenase; Provisional
Probab=71.59 E-value=13 Score=39.07 Aligned_cols=77 Identities=14% Similarity=-0.007 Sum_probs=54.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA----- 456 (745)
+.++|.|.+. .|..++++|.+.+ +.|++++++++..+...+.. +..+.++.+|.++++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERG------DRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 3578888654 6889999997643 67888888887766554322 23577889999999887654
Q ss_pred -CcccccEEEEecCC
Q 004558 457 -SVSKARAIIVLASD 470 (745)
Q Consensus 457 -gI~~A~aVIiltdd 470 (745)
.....|++|-++..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 73 EHFGRLDIVVNNAGY 87 (275)
T ss_pred HHcCCCCEEEECCCC
Confidence 12356888877754
No 323
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=71.57 E-value=3.3 Score=45.01 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=31.2
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhh
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLT 688 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~ 688 (745)
++|.|+|.|.+|..++..|... ....++.+++.++ ++++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~--~~~~~~a 42 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE--EKAEGEA 42 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc--chhhHhH
Confidence 3799999999999999988653 1125899999753 5555444
No 324
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=71.52 E-value=6.5 Score=39.21 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~ 680 (745)
-..++|.|+|.|++|..+++.|..+ |.+|...+..+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCC
Confidence 3567999999999999999999986 999999998654
No 325
>PRK06483 dihydromonapterin reductase; Provisional
Probab=71.49 E-value=11 Score=38.61 Aligned_cols=74 Identities=20% Similarity=0.106 Sum_probs=47.3
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++.....++. .++.++.+|.++++.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 68 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG------QPVIVSYRTHYPAIDGLRQ-------AGAQCIQADFSTNAGIMAFIDEL 68 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC------CeEEEEeCCchhHHHHHHH-------cCCEEEEcCCCCHHHHHHHHHHH
Confidence 35789999865 6899999998643 5777888776543322221 2356778888888776553
Q ss_pred --CcccccEEEEec
Q 004558 457 --SVSKARAIIVLA 468 (745)
Q Consensus 457 --gI~~A~aVIilt 468 (745)
....-|.+|-.+
T Consensus 69 ~~~~~~id~lv~~a 82 (236)
T PRK06483 69 KQHTDGLRAIIHNA 82 (236)
T ss_pred HhhCCCccEEEECC
Confidence 112345666554
No 326
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=71.43 E-value=14 Score=37.96 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=52.4
Q ss_pred eEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc------
Q 004558 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (745)
Q Consensus 384 HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA------ 456 (745)
.++|.|.+ ..|..++++|.+.+ ..|++++++++..+.+.+... ..+.++.++.+|..+.+.++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAG------ANVVVNDLGEAGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 58888864 46999999998643 578888888776655443221 1134688899999999855432
Q ss_pred CcccccEEEEecC
Q 004558 457 SVSKARAIIVLAS 469 (745)
Q Consensus 457 gI~~A~aVIiltd 469 (745)
.....|.+|-...
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1234677776654
No 327
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.40 E-value=16 Score=37.64 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=45.0
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...++... .+.++.++..|.++.+.+++
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQG------AHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHH
Confidence 35688898776 5899999998653 5788889887766655443211 12346677788888776654
No 328
>PRK07454 short chain dehydrogenase; Provisional
Probab=71.36 E-value=8.6 Score=39.35 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=51.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..++++|.+ .|.+|.+++..+ +..+.+.+. + ... ...+..+.+|.+|.+.++++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAK---AGWDLALVARSQ--DALEALAAE-L--RST-GVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HhC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 368999998 7799999999975 488999988653 333333220 0 011 12345688999999876542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 77 ~~~~~~~id~lv~~a 91 (241)
T PRK07454 77 LLEQFGCPDVLINNA 91 (241)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578888655
No 329
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.33 E-value=4.6 Score=34.48 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=26.8
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~ 421 (745)
+++|+|.|..|.+++..|...+ ..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g------~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG------KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC------cEEEEEeccc
Confidence 6899999999999999998754 5778887654
No 330
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.31 E-value=37 Score=36.75 Aligned_cols=123 Identities=15% Similarity=0.244 Sum_probs=69.4
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
..+++|+|+|..|..+++.|...+ ..|++.+++++..+...+ .+.. +...++|.++ +.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G------~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~~-l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG------ARVFVGARSSADLARITE--------MGLI-----PFPLNKLEEK-VAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHHH-hccC
Confidence 358999999999999999998653 578888988866544321 1111 1123444443 5689
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEe-cCCCC--HHHHHHcCCCeee-----EEccHHHHHHHHH
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM-SDLDN--EPLVKLVGGELIE-----TVVAHDVIGRLMI 533 (745)
Q Consensus 462 ~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv-~d~e~--~~~l~~aGad~Ve-----~V~s~el~a~lLa 533 (745)
|.||..++. . +...-.+..+.++ .++.-+ .++.. -+..++.|+..+- -.+.+...+++++
T Consensus 211 DiVint~P~------~---ii~~~~l~~~k~~---aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~ 278 (287)
T TIGR02853 211 DIVINTIPA------L---VLTADVLSKLPKH---AVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILA 278 (287)
T ss_pred CEEEECCCh------H---HhCHHHHhcCCCC---eEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHH
Confidence 999988742 1 1111122334332 244433 33322 2567778876420 0123455566666
Q ss_pred HHH
Q 004558 534 QCA 536 (745)
Q Consensus 534 q~~ 536 (745)
+.+
T Consensus 279 ~~~ 281 (287)
T TIGR02853 279 NVL 281 (287)
T ss_pred HHH
Confidence 544
No 331
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=71.18 E-value=8.8 Score=36.52 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=40.8
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
.-||-|+|.|+.|..|++.|.+. |.+|.-+... ..+..++++. .+....+ . .+.+. ++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~sr-s~~sa~~a~~------~~~~~~~-------~---~~~~~-~~~ 68 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA---GHEVVGVYSR-SPASAERAAA------FIGAGAI-------L---DLEEI-LRD 68 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT---TSEEEEESSC-HH-HHHHHHC--------TT---------------TTGG-GCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeC-Cccccccccc------ccccccc-------c---ccccc-ccc
Confidence 45999999999999999999874 8888887653 4455555554 2332221 1 12222 567
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
+|.+++.+
T Consensus 69 aDlv~iav 76 (127)
T PF10727_consen 69 ADLVFIAV 76 (127)
T ss_dssp -SEEEE-S
T ss_pred CCEEEEEe
Confidence 89998888
No 332
>PRK06138 short chain dehydrogenase; Provisional
Probab=71.18 E-value=16 Score=37.51 Aligned_cols=78 Identities=10% Similarity=0.127 Sum_probs=53.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .+..+...+. + . .+..+..+.+|.+|.+.+++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~~-~---~-~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAR---EGARVVVADRD--AEAAERVAAA-I---A-AGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH---CCCeEEEecCC--HHHHHHHHHH-H---h-cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 358999998 6889999999976 48899998864 3333333320 0 1 123455689999999887652
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-.+
T Consensus 75 i~~~~~~id~vi~~a 89 (252)
T PRK06138 75 VAARWGRLDVLVNNA 89 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678888766
No 333
>PRK05872 short chain dehydrogenase; Provisional
Probab=71.13 E-value=15 Score=39.34 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=54.5
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++.++...++.. .+.++.++..|.++++.++++-
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARG------AKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888755 6899999998643 578888998887776654431 1234666778999988876641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|..+.
T Consensus 80 ~~~~g~id~vI~nAG 94 (296)
T PRK05872 80 VERFGGIDVVVANAG 94 (296)
T ss_pred HHHcCCCCEEEECCC
Confidence 134577777664
No 334
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.09 E-value=2.6 Score=45.23 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhh-------cCCCCcCCCCCceEEEEEcCcCCHhhH
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLT-------DGGLDISGLMNIKLVHREGNAVIRRHL 715 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~-------e~g~~~~~L~~~~V~~i~GD~td~~~L 715 (745)
.++|.|+|.|..|..++..|.+. |.+|++++ .++++.+.+. +.+.....+......-+.+..+--..+
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 75 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS---GFQTTLVD--IKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDL 75 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC---CCcEEEEe--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcH
Q ss_pred hcCCCCCcceEEEec-Ccchhhhhhc
Q 004558 716 ESLPLETFDSMSHWK-TRLCILTHVL 740 (745)
Q Consensus 716 ~e~~I~~~DavIilT-d~~ni~~~~~ 740 (745)
++. +.++|.|+... ++..+-..++
T Consensus 76 ~~~-~~~aD~Vi~avpe~~~~k~~~~ 100 (288)
T PRK09260 76 KAA-VADADLVIEAVPEKLELKKAVF 100 (288)
T ss_pred HHh-hcCCCEEEEeccCCHHHHHHHH
No 335
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.95 E-value=6.4 Score=45.17 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=29.8
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..++|+|+|+|..|...+..|.+. |.+|+|++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~---G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA---GHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCcEEEEecC
Confidence 457999999999999999999764 8999999964
No 336
>PRK05599 hypothetical protein; Provisional
Probab=70.89 E-value=14 Score=38.39 Aligned_cols=65 Identities=29% Similarity=0.183 Sum_probs=44.0
Q ss_pred eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 384 HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
.++|.|++. .|..++++|.+ + ..|+++.++++..++..+++.. .....+.++..|.++++.++++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g------~~Vil~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~~ 67 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G------EDVVLAARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHREL 67 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C------CEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHHHH
Confidence 578999877 68899999862 2 5688888888777765543311 1112366778888887776653
No 337
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.87 E-value=12 Score=38.68 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=51.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCch----------------HHHHHhhcCCCCcCCCCCceEEE
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK----------------EREKKLTDGGLDISGLMNIKLVH 704 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~----------------er~~~l~e~g~~~~~L~~~~V~~ 704 (745)
...+|+|+|.|-.|..+++.|... |. ++++++.+.-+ .|.+.+++ .+ ...-+++.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~-~l-~~lnp~v~v~~ 101 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKE-NL-LEINPFVEIEA 101 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHH-HH-HHHCCCCEEEE
Confidence 456899999999999999999763 54 48998875211 11111111 00 00124566655
Q ss_pred EEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 705 REGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 705 i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
+....++ +.+.+ -++++|.||..+|..
T Consensus 102 ~~~~i~~-~~~~~-~~~~~DvVI~a~D~~ 128 (212)
T PRK08644 102 HNEKIDE-DNIEE-LFKDCDIVVEAFDNA 128 (212)
T ss_pred EeeecCH-HHHHH-HHcCCCEEEECCCCH
Confidence 6655544 33333 367899999888544
No 338
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.83 E-value=8.6 Score=39.65 Aligned_cols=79 Identities=6% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + .+. +..+..+.+|.+|.+.+++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAR---EGAKVVVADRDA--AGGEETVAL-I--REA-GGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 5789999999976 488999998653 333322210 0 011 22355688999999877652
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123558887655
No 339
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=70.75 E-value=8.3 Score=46.51 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=52.8
Q ss_pred cccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 380 ~~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
...++|+|.|+ |-.|.+++++|...+ ++.|+.+++++....... ...++.++.||.++.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~-----g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDD-----NYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCC-----CcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 45678999997 557999999998642 367888887664322211 12357889999998665433235
Q ss_pred ccccEEEEecC
Q 004558 459 SKARAIIVLAS 469 (745)
Q Consensus 459 ~~A~aVIiltd 469 (745)
+++|+||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 67899986553
No 340
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=70.75 E-value=15 Score=39.70 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=49.9
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCC--chHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CC
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 720 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p--~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-~I 720 (745)
+|+|.|+ |-+|..+++.|.+ .|.+|++++... ...+...+.+ +....+.++.+|.+|.+.+.++ .-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~---~g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQ---NGHDVVILDNLCNSKRSVLPVIER-------LGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHH---CCCeEEEEecCCCchHhHHHHHHH-------hcCCCceEEEccCCCHHHHHHHHhc
Confidence 6899996 8999999999975 488999986421 1111112221 1122234578999999887653 12
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
...|.||-++
T Consensus 72 ~~~d~vvh~a 81 (338)
T PRK10675 72 HAIDTVIHFA 81 (338)
T ss_pred CCCCEEEECC
Confidence 3589998876
No 341
>PRK07060 short chain dehydrogenase; Provisional
Probab=70.52 E-value=13 Score=37.86 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 719 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~ 719 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+ +. .++.+|.+|.+.+++. .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~---~g~~V~~~~r~--~~~~~~~~~------~~-~~--~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQ---RGARVVAAARN--AAALDRLAG------ET-GC--EPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hh-CC--eEEEecCCCHHHHHHHHHH
Confidence 468999998 6899999999976 48899888864 355555543 11 12 2477999998876552 1
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
....|.+|-..
T Consensus 75 ~~~~d~vi~~a 85 (245)
T PRK07060 75 AGAFDGLVNCA 85 (245)
T ss_pred hCCCCEEEECC
Confidence 34578888766
No 342
>PRK06101 short chain dehydrogenase; Provisional
Probab=70.48 E-value=13 Score=38.12 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=45.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 717 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e 717 (745)
+.++|.|+ |-+|..++++|.+ .|.+|.++..+ +++.+.+.+ ...++ ..+.+|.+|.+.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~------~~~~~--~~~~~D~~~~~~~~~ 63 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHT------QSANI--FTLAFDVTDHPGTKA 63 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHH------hcCCC--eEEEeeCCCHHHHHH
Confidence 46899997 6789999999975 58999998864 456666654 12233 357899999997766
No 343
>PRK07775 short chain dehydrogenase; Provisional
Probab=70.40 E-value=16 Score=38.51 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=53.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
+++++|.|.+. .|..++++|...+ ..|+++.++++..++..++.. ..+.++.++.+|.++++.++++-
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G------~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAG------FPVALGARRVEKCEELVDKIR--ADGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46899999754 6999999998643 567777776655544433221 01235778899999999887531
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|-++..
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 82 EEALGEIEVLVSGAGD 97 (274)
T ss_pred HHhcCCCCEEEECCCc
Confidence 2356787777654
No 344
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.28 E-value=15 Score=37.95 Aligned_cols=77 Identities=6% Similarity=0.062 Sum_probs=52.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhc--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLES-- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e-- 717 (745)
.++++|.|+ |-+|..+++.|.+ .|.+|.+++..+ +..+.+.+ .++ ...+..+..|.+|++.+++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR---AGADVVLAARTA--ERLDEVAA------EIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HHHHhCCceEEEecCCCCHHHHHHHH
Confidence 468999998 6789999999976 488999998643 33333332 111 1234568999999987753
Q ss_pred ----CCCCCcceEEEec
Q 004558 718 ----LPLETFDSMSHWK 730 (745)
Q Consensus 718 ----~~I~~~DavIilT 730 (745)
......|.+|-.+
T Consensus 74 ~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 74 ALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHcCCccEEEECC
Confidence 1235678888776
No 345
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=70.23 E-value=4.5 Score=40.16 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=39.9
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
...|.|+|||..|..-+..|+..+ ..|++..++.. ..+.+.++ +..+ .+..+| +++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG------~~V~Vglr~~s~s~~~A~~~------Gf~v----------~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG------VNVIVGLREGSASWEKAKAD------GFEV----------MSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-------EEEEEE-TTCHHHHHHHHT------T-EC----------CEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhCC------CCEEEEecCCCcCHHHHHHC------CCee----------ccHHHH-Hhh
Confidence 468899999999999999998754 67777765543 44444321 1111 244555 778
Q ss_pred ccEEEEecC
Q 004558 461 ARAIIVLAS 469 (745)
Q Consensus 461 A~aVIiltd 469 (745)
||.|+++++
T Consensus 61 aDvV~~L~P 69 (165)
T PF07991_consen 61 ADVVMLLLP 69 (165)
T ss_dssp -SEEEE-S-
T ss_pred CCEEEEeCC
Confidence 999999996
No 346
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=69.96 E-value=10 Score=40.12 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=49.4
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-----
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 718 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~----- 718 (745)
+|+|.|+ |.+|..+++.|.+ .|.+|+++..++.. .. ..++. ++.+|..|.+.|+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---~g~~V~~~~R~~~~--~~-----------~~~~~--~~~~d~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---ASVPFLVASRSSSS--SA-----------GPNEK--HVKFDWLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---CCCcEEEEeCCCcc--cc-----------CCCCc--cccccCCCHHHHHHHHhccc
Confidence 4899999 9999999999975 48899999876431 11 12333 367999999999774
Q ss_pred CCCC-cceEEEec
Q 004558 719 PLET-FDSMSHWK 730 (745)
Q Consensus 719 ~I~~-~DavIilT 730 (745)
.+.. +|.++.++
T Consensus 63 ~~~g~~d~v~~~~ 75 (285)
T TIGR03649 63 GMEPEISAVYLVA 75 (285)
T ss_pred CcCCceeEEEEeC
Confidence 2344 88887665
No 347
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=69.56 E-value=39 Score=36.13 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=30.8
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~ 427 (745)
++|.|+|.|..|..++..|...+ +.|.++++ ++.++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g------~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG------RDVTFLVR-PKRAKAL 38 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC------CceEEEec-HHHHHHH
Confidence 47999999999999999998653 67888888 6666554
No 348
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=69.56 E-value=24 Score=37.97 Aligned_cols=86 Identities=7% Similarity=-0.045 Sum_probs=51.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCch----HH-------------HHHhhcCCCCcCCCCCceEE
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEK----ER-------------EKKLTDGGLDISGLMNIKLV 703 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~----er-------------~~~l~e~g~~~~~L~~~~V~ 703 (745)
...+|+|+|.|-+|..+++.|.+. | -+++|++.+..+ .| .+.+++.- ...-+++.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl--~~INP~~~V~ 103 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART---GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERI--RQINPECRVT 103 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHH--HhHCCCcEEE
Confidence 456899999999999999999864 5 689999965211 11 11111100 0122455555
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 704 HREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 704 ~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
.++. ..+.+.+.+.-..++|.||...|..
T Consensus 104 ~i~~-~i~~e~~~~ll~~~~D~VIdaiD~~ 132 (268)
T PRK15116 104 VVDD-FITPDNVAEYMSAGFSYVIDAIDSV 132 (268)
T ss_pred EEec-ccChhhHHHHhcCCCCEEEEcCCCH
Confidence 4433 2233334333234799998888764
No 349
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=69.53 E-value=13 Score=40.10 Aligned_cols=68 Identities=9% Similarity=-0.077 Sum_probs=47.0
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCH--hhHhcCCC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIR--RHLESLPL 720 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~--~~L~e~~I 720 (745)
..+|.|+|.|.+|..+++.|.+ .|..+.|+..+...+.++.-.+. +..|+ +....+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~---~g~~v~i~g~d~~~~~~~~a~~l-----------------gv~d~~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE---AGLVVRIIGRDRSAATLKAALEL-----------------GVIDELTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH---cCCeEEEEeecCcHHHHHHHhhc-----------------Ccccccccchhhhhc
Confidence 3589999999999999999987 48889898887655555443321 12222 12223456
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.||+.+
T Consensus 63 ~~aD~Vivav 72 (279)
T COG0287 63 AEADLVIVAV 72 (279)
T ss_pred ccCCEEEEec
Confidence 7788888877
No 350
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=69.52 E-value=10 Score=41.26 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=50.4
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-CCCC
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLET 722 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-~I~~ 722 (745)
+|||.|| |=+|...+.+|.+ .|.+|.|++.--.-.+. .++...+.+++||..|++.|.+. .=.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~---~G~~vvV~DNL~~g~~~-----------~v~~~~~~f~~gDi~D~~~L~~vf~~~~ 67 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKI-----------ALLKLQFKFYEGDLLDRALLTAVFEENK 67 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCCHH-----------HhhhccCceEEeccccHHHHHHHHHhcC
Confidence 6899988 8899999999976 59999999974222111 12222134689999999999872 2236
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
.|+||-.+
T Consensus 68 idaViHFA 75 (329)
T COG1087 68 IDAVVHFA 75 (329)
T ss_pred CCEEEECc
Confidence 77777554
No 351
>PRK00536 speE spermidine synthase; Provisional
Probab=69.52 E-value=18 Score=38.73 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=47.8
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH---hhhcccCCccEEEEEeCCCCHHHHhccC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~---~~~~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (745)
.-.+|+|+|+|+ | ..++|+.... ..|+++|-|++.++...+ .....+.+.++.++. .++++.
T Consensus 72 ~pk~VLIiGGGD-G-g~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~~ 136 (262)
T PRK00536 72 ELKEVLIVDGFD-L-ELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLD 136 (262)
T ss_pred CCCeEEEEcCCc-h-HHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhcc
Confidence 457999999998 3 4567776532 379999999977665432 112234556677664 144444
Q ss_pred cccccEEEEec
Q 004558 458 VSKARAIIVLA 468 (745)
Q Consensus 458 I~~A~aVIilt 468 (745)
.++-|.||+-+
T Consensus 137 ~~~fDVIIvDs 147 (262)
T PRK00536 137 IKKYDLIICLQ 147 (262)
T ss_pred CCcCCEEEEcC
Confidence 56789999874
No 352
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.50 E-value=11 Score=38.32 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=51.3
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchH-------------------HHHHhhcCCCCcCCCCCceE
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE-------------------REKKLTDGGLDISGLMNIKL 702 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~e-------------------r~~~l~e~g~~~~~L~~~~V 702 (745)
..+|+|+|.|-.|..+++-|... |. ++++++.+.-++ |++.+++. + .+.-+++.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~-L-~~lNp~v~i 93 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEF-L-QELNPNVKL 93 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHH-H-HHHCCCCEE
Confidence 46999999999999999999753 54 488988652211 11111110 0 001256777
Q ss_pred EEEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 703 VHREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 703 ~~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
..+..+.++.....+.-+.++|.||..+|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~ 124 (198)
T cd01485 94 SIVEEDSLSNDSNIEEYLQKFTLVIATEENY 124 (198)
T ss_pred EEEecccccchhhHHHHHhCCCEEEECCCCH
Confidence 6677766521111222267899988887653
No 353
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=69.48 E-value=18 Score=39.14 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=52.7
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~---e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
..+++|+|.|..|..++..|...+. ..|++++++. ++.+.+.+++... ...+.+...|..+.+.++. .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHh-hh
Confidence 3589999999999999999886542 3477888875 5555554433111 1233444566666666644 45
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
+++|.+|-.|.-
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 678999888864
No 354
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.44 E-value=38 Score=33.11 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=55.0
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~ 462 (745)
.+|=++|.|..|..+++.|...+ +.|.+-|++++..+.+.+. ++.. ..+++++ +++||
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g------~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG------YEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT------TEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhcC------CeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 57889999999999999998754 7899999999888877542 2221 1233333 34569
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH---HhhhcCCCCceEEEEecCCC
Q 004558 463 AIIVLASDENADQSDARALRVVLS---LTGVKEGLRGHVVVEMSDLD 506 (745)
Q Consensus 463 aVIiltdd~~~~~sD~~NI~~~Ls---ar~l~p~~~~~IIArv~d~e 506 (745)
.|+.+..+ |...-.++.. +..+.+ ..+++...+..
T Consensus 60 vvi~~v~~------~~~v~~v~~~~~i~~~l~~---g~iiid~sT~~ 97 (163)
T PF03446_consen 60 VVILCVPD------DDAVEAVLFGENILAGLRP---GKIIIDMSTIS 97 (163)
T ss_dssp EEEE-SSS------HHHHHHHHHCTTHGGGS-T---TEEEEE-SS--
T ss_pred ceEeeccc------chhhhhhhhhhHHhhcccc---ceEEEecCCcc
Confidence 99988743 3332233332 333443 35777766543
No 355
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=69.38 E-value=13 Score=40.26 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=49.6
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-ccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSK 460 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-I~~ 460 (745)
++++|.|+ |-.|..++++|...+ +.|+++++............ ....+.++.++.||.++.+.+.++= -.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g------~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG------HDVVILDNLCNSKRSVLPVI-ERLGGKHPTFVEGDIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC------CeEEEEecCCCchHhHHHHH-HHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence 36899996 667999999998754 56666653211111111100 0111235678899999998877652 135
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
+|.||-++..
T Consensus 74 ~d~vvh~a~~ 83 (338)
T PRK10675 74 IDTVIHFAGL 83 (338)
T ss_pred CCEEEECCcc
Confidence 8888887643
No 356
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.36 E-value=12 Score=38.77 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=52.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC-
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e~- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.. +++.+.+.+ .++ +..+..+.+|.+|++.+++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQ---AGAEVILNGRD--PAKLAAAAE------SLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHH------HHHhcCceEEEEEccCCCHHHHHHHH
Confidence 468999998 7899999999975 48899888764 333333322 111 23355688999998877653
Q ss_pred -----CCCCcceEEEec
Q 004558 719 -----PLETFDSMSHWK 730 (745)
Q Consensus 719 -----~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 79 ~~~~~~~~~~d~li~~a 95 (255)
T PRK07523 79 DAFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 134578887766
No 357
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.29 E-value=10 Score=43.22 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=48.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
.-++|+|+|+|.+|..+++.+..+ |.+|.+++.+ +.|.+...+.| ..+ . + .++. +.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~---Ga~ViV~d~d--~~R~~~A~~~G--------~~~--~--~--~~e~-----v~ 256 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ---GARVIVTEVD--PICALQAAMEG--------YEV--M--T--MEEA-----VK 256 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC--hhhHHHHHhcC--------CEE--c--c--HHHH-----Hc
Confidence 457999999999999999999764 8889888865 45655544322 111 1 0 0122 34
Q ss_pred CcceEEEecCcchhhhh
Q 004558 722 TFDSMSHWKTRLCILTH 738 (745)
Q Consensus 722 ~~DavIilTd~~ni~~~ 738 (745)
.+|.||..|..-+++..
T Consensus 257 ~aDVVI~atG~~~~i~~ 273 (413)
T cd00401 257 EGDIFVTTTGNKDIITG 273 (413)
T ss_pred CCCEEEECCCCHHHHHH
Confidence 67999888855555543
No 358
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.26 E-value=25 Score=35.77 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=29.1
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~ 421 (745)
.+-||+|+|.|..|.++++.|...+- ..++++|.|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 46799999999999999999998753 3567777663
No 359
>PRK06924 short chain dehydrogenase; Provisional
Probab=69.20 E-value=16 Score=37.47 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=44.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 717 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e 717 (745)
++++|.|+ |.+|..++++|.+ .|.+|.++...+. ++.+.+.+ .. ...+..+.+|.+|.+.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~~---~g~~V~~~~r~~~-~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLE---KGTHVISISRTEN-KELTKLAE------QY-NSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHh---cCCEEEEEeCCch-HHHHHHHh------cc-CCceEEEEecCCCHHHHHH
Confidence 47999997 7899999999976 4889998886542 34444433 11 1234457899999988764
No 360
>PRK06182 short chain dehydrogenase; Validated
Probab=69.16 E-value=13 Score=38.91 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+ .+ +..+.+|.+|.+.+++.
T Consensus 4 k~vlItGasggiG~~la~~l~~---~G~~V~~~~r~--~~~l~~~~~--------~~--~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA---QGYTVYGAARR--VDKMEDLAS--------LG--VHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHh--------CC--CeEEEeeCCCHHHHHHHHHHH
Confidence 58999997 7899999999975 48999988864 344444433 12 33578999999887653
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 69 ~~~~~~id~li~~a 82 (273)
T PRK06182 69 IAEEGRIDVLVNNA 82 (273)
T ss_pred HHhcCCCCEEEECC
Confidence 124678888776
No 361
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=69.04 E-value=39 Score=32.05 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.3
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~ 421 (745)
||+|+|.|..|..+++.|...+. ..+.++|.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCC
Confidence 68999999999999999998753 3577887763
No 362
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=68.95 E-value=12 Score=41.04 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEE-EEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELW-MLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~-IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~ 721 (745)
++|+|.|+ |-+|..+++.|.+ .|.++. +++..+.......+.. ..++..+.++.+|.+|.+.+++. ++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~---~g~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~-~~ 71 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIIN---ETSDAVVVVDKLTYAGNLMSLAP------VAQSERFAFEKVDICDRAELARV-FT 71 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHH---cCCCEEEEEecCccccchhhhhh------cccCCceEEEECCCcChHHHHHH-Hh
Confidence 47999998 7799999999976 365544 4443211111111111 01122344678999999888764 33
Q ss_pred --CcceEEEec
Q 004558 722 --TFDSMSHWK 730 (745)
Q Consensus 722 --~~DavIilT 730 (745)
..|.||-++
T Consensus 72 ~~~~D~Vih~A 82 (355)
T PRK10217 72 EHQPDCVMHLA 82 (355)
T ss_pred hcCCCEEEECC
Confidence 479998887
No 363
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.76 E-value=19 Score=36.85 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=53.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVL-iD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--I 458 (745)
++++|.|.+. .|..++++|.+.+ ..|++ ..++.+..++..++.. ..+.++.++.+|.++++.++++= +
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG------YDIAVNYARSRKAAEETAEEIE--ALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999865 6899999998754 44444 4666655554433321 12346788999999999877642 1
Q ss_pred ----ccccEEEEecCC
Q 004558 459 ----SKARAIIVLASD 470 (745)
Q Consensus 459 ----~~A~aVIiltdd 470 (745)
...|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 256888887753
No 364
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=68.73 E-value=46 Score=36.02 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=48.5
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~a 463 (745)
+|-|+|.|..|..+++.|...+ +.|++.|++++.++.+.+. +... ..+.+++.++ +.++|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g------~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~~-~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG------HDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQR-LSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHhh-cCCCCE
Confidence 6889999999999999998754 6788899999887766431 1111 1344454432 457899
Q ss_pred EEEecCC
Q 004558 464 IIVLASD 470 (745)
Q Consensus 464 VIiltdd 470 (745)
|+++.++
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9999853
No 365
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=68.67 E-value=9 Score=38.83 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=51.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L--~~~~V~~i~GD~td~~~L~e~-- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+ ....+..+.+|.+|.+.+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~---~g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA---DGAKVVIYDSNE--EAAEALAA------ELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCh--hHHHHHHH------HHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 58999998 6789999999976 488898888654 33333322 11 122344578999998876542
Q ss_pred C----CCCcceEEEec
Q 004558 719 P----LETFDSMSHWK 730 (745)
Q Consensus 719 ~----I~~~DavIilT 730 (745)
+ ....|.+|-.+
T Consensus 75 ~~~~~~~~id~vi~~a 90 (246)
T PRK05653 75 AAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHhCCCCEEEECC
Confidence 1 23568888876
No 366
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=68.64 E-value=16 Score=38.00 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecC----CchHH-----------------HHHhhcCCCCcCCCCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV----PEKER-----------------EKKLTDGGLDISGLMN 699 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~----p~~er-----------------~~~l~e~g~~~~~L~~ 699 (745)
...+|+|+|.|..|..+++.|... |. ++++++.+ .+-.| .+.+.+ .-++
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~------~np~ 90 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA------INPD 90 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH------hCCC
Q ss_pred ceEEEEEcCcCCHhhHhcCCCCCcceEEEecCc
Q 004558 700 IKLVHREGNAVIRRHLESLPLETFDSMSHWKTR 732 (745)
Q Consensus 700 ~~V~~i~GD~td~~~L~e~~I~~~DavIilTd~ 732 (745)
+.+..+..+. +.+.+.+. +.++|.||..+|.
T Consensus 91 ~~i~~~~~~i-~~~~~~~~-~~~~DvVi~~~d~ 121 (228)
T cd00757 91 VEIEAYNERL-DAENAEEL-IAGYDLVLDCTDN 121 (228)
T ss_pred CEEEEeccee-CHHHHHHH-HhCCCEEEEcCCC
No 367
>PRK08265 short chain dehydrogenase; Provisional
Probab=68.63 E-value=16 Score=38.13 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=52.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+ .+ +..+..+.+|.+|++.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA---AGARVAIVDID--ADNGAAVAA------SL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 368999998 7789999999976 48899998864 344444443 12 12345688999999877542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-..
T Consensus 74 ~~~~~g~id~lv~~a 88 (261)
T PRK08265 74 VVARFGRVDILVNLA 88 (261)
T ss_pred HHHHhCCCCEEEECC
Confidence 124568887654
No 368
>PRK07832 short chain dehydrogenase; Provisional
Probab=68.61 E-value=17 Score=38.19 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=51.7
Q ss_pred eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 004558 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (745)
Q Consensus 384 HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (745)
.++|.|.+. .|..++++|...+ ..|++++++++..+...++... .....+.++.+|.++++.++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G------~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQG------AELFLTDRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 588998765 6889999998643 5688888887666555443211 11223456789999988766431
Q ss_pred -cccccEEEEecC
Q 004558 458 -VSKARAIIVLAS 469 (745)
Q Consensus 458 -I~~A~aVIiltd 469 (745)
....|.+|-.+.
T Consensus 75 ~~~~id~lv~~ag 87 (272)
T PRK07832 75 AHGSMDVVMNIAG 87 (272)
T ss_pred hcCCCCEEEECCC
Confidence 235688887764
No 369
>PRK12320 hypothetical protein; Provisional
Probab=68.44 E-value=23 Score=43.18 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=49.9
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A 461 (745)
++|+|.|+ |-.|.+++++|...+ +.|+.+++.+... ...++.++.||..+.. +.++ +.++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G------~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~a-l~~~ 61 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG------HTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQEL-AGEA 61 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC------CEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHH-hcCC
Confidence 37999995 777999999998754 6788888754321 0135778999999985 5443 5578
Q ss_pred cEEEEecCC
Q 004558 462 RAIIVLASD 470 (745)
Q Consensus 462 ~aVIiltdd 470 (745)
|.||-++..
T Consensus 62 D~VIHLAa~ 70 (699)
T PRK12320 62 DAVIHLAPV 70 (699)
T ss_pred CEEEEcCcc
Confidence 999998864
No 370
>PRK06125 short chain dehydrogenase; Provisional
Probab=68.30 E-value=18 Score=37.45 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI 458 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. ..+.++.++..|.++++.++++ ..
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEG------CHLHLVARDADALEALAADLRA-AHGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHh
Confidence 35778888754 7899999998643 5788888887766654433211 1134577888999988877653 12
Q ss_pred ccccEEEEecC
Q 004558 459 SKARAIIVLAS 469 (745)
Q Consensus 459 ~~A~aVIiltd 469 (745)
...|.+|..+.
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 35677776554
No 371
>PRK07831 short chain dehydrogenase; Provisional
Probab=68.26 E-value=20 Score=37.29 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=51.0
Q ss_pred CceEEEEcc-c-chHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004558 643 PEKILFCGW-R-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 643 ~~rILI~Gw-g-~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-- 718 (745)
.++++|.|+ | .+|..+++.|.+ .|..|.+++.. .++.+...+. + ...+....+..+.+|.+|.+.+++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~---~G~~V~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 89 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALE---EGARVVISDIH--ERRLGETADE-L-AAELGLGRVEAVVCDVTSEAQVDALID 89 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHHH-H-HHhcCCceEEEEEccCCCHHHHHHHHH
Confidence 478999998 4 599999999975 48888888754 2333322210 0 0012222355688999998766531
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 90 ~~~~~~g~id~li~~a 105 (262)
T PRK07831 90 AAVERLGRLDVLVNNA 105 (262)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124678887766
No 372
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.17 E-value=9.7 Score=38.20 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.8
Q ss_pred eEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh
Q 004558 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (745)
Q Consensus 384 HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~ 430 (745)
+|-|+|.|..|..++..+...+ +.|++.|.+++.++...++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G------~~V~l~d~~~~~l~~~~~~ 41 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG------YEVTLYDRSPEALERARKR 41 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT------SEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC------CcEEEEECChHHHHhhhhH
Confidence 5889999999999999998754 8999999999887766543
No 373
>PLN02686 cinnamoyl-CoA reductase
Probab=68.17 E-value=15 Score=40.87 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=50.8
Q ss_pred ccCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh-c---ccCCccEEEEEeCCCCHHHHhc
Q 004558 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-F---DFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 381 ~k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~-~---~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
..+.|+|.|+. -.|..++++|...+ +.|+++.++.+..+.+ .+.. + .....++.++.||.++.+.+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G------~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~ 124 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG------YSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHE 124 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHH
Confidence 35679999985 46999999998754 5666655554443332 1110 0 0001247889999999998877
Q ss_pred cCcccccEEEEec
Q 004558 456 VSVSKARAIIVLA 468 (745)
Q Consensus 456 AgI~~A~aVIilt 468 (745)
+ ++.++.++-++
T Consensus 125 ~-i~~~d~V~hlA 136 (367)
T PLN02686 125 A-FDGCAGVFHTS 136 (367)
T ss_pred H-HHhccEEEecC
Confidence 5 55677777544
No 374
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.16 E-value=18 Score=37.90 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=41.4
Q ss_pred CeEEEEccC---ccHHHHHHHHHHhcccCCCCeEEEEEcC---ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAER---DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 383 ~HIVI~G~g---~~g~~L~~eL~~~~~s~~~~~iVVLiD~---d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
..++|.|++ ..|..++++|.+.+ ..|+++++ +++.++++.++. .+.++.++..|.++++..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G------~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAG------AKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCC------CEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHH
Confidence 578899984 68999999998754 56777754 334455443321 12356677778888777554
No 375
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=68.14 E-value=18 Score=41.37 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=31.1
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le 425 (745)
...++|+|+|..|..++..|...+ ..|+++|.++.+..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~G------a~ViV~d~dp~ra~ 249 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLG------ARVIVTEVDPICAL 249 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCCchhhH
Confidence 458999999999999999998654 57899999886643
No 376
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.12 E-value=13 Score=41.59 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCc-----------------hHHHHHhhcCCCCcCCCCCceEE
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE-----------------KEREKKLTDGGLDISGLMNIKLV 703 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~-----------------~er~~~l~e~g~~~~~L~~~~V~ 703 (745)
...+|+|+|.|-.|..+++.|... |. ++++++.+.- ..|.+.+++. + ...-+++.+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~-l-~~~np~v~v~ 208 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQR-L-AALNPDVQVE 208 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHH-H-HHHCCCCEEE
Confidence 345899999999999999999764 54 7999986510 1233332220 0 0012455555
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 704 HREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 704 ~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
........ +.+.+. ++++|.||..||..
T Consensus 209 ~~~~~~~~-~~~~~~-~~~~D~Vv~~~d~~ 236 (376)
T PRK08762 209 AVQERVTS-DNVEAL-LQDVDVVVDGADNF 236 (376)
T ss_pred EEeccCCh-HHHHHH-HhCCCEEEECCCCH
Confidence 55544443 223332 56799999998654
No 377
>PRK08177 short chain dehydrogenase; Provisional
Probab=68.08 E-value=14 Score=37.47 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=49.1
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI--- 458 (745)
++++|.|... .|..++++|...+ ..|++++++++..+.. ++. .++.+..+|.++++.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~-~~~------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG------WQVTATVRGPQQDTAL-QAL------PGVHIEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC------CEEEEEeCCCcchHHH-Hhc------cccceEEcCCCCHHHHHHHHHHhh
Confidence 4688998655 6889999998643 5788888877655443 211 245677788888876655311
Q ss_pred -ccccEEEEecC
Q 004558 459 -SKARAIIVLAS 469 (745)
Q Consensus 459 -~~A~aVIiltd 469 (745)
.+.|.+|..+.
T Consensus 69 ~~~id~vi~~ag 80 (225)
T PRK08177 69 GQRFDLLFVNAG 80 (225)
T ss_pred cCCCCEEEEcCc
Confidence 24677776653
No 378
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.01 E-value=20 Score=36.97 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=42.4
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~r 455 (745)
..++|.|++. .|..++++|...+ ..|+++.++++.+++..++... .+.++..+..|.++++.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G------~~V~~~~r~~~~l~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLG------ATLILCDQDQSALKDTYEQCSA--LTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCCeEEEEccCCCHHHHHH
Confidence 5788999887 6889999998754 6788889888777665443210 12234445556566655543
No 379
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.89 E-value=24 Score=35.99 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=51.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc----
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e---- 717 (745)
.++++|.|+ |.+|..+++.|.+ .|..|.+++.+ +++.+...+. + ... +..+..+.+|.+|.+.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~--~~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLN--QEKLEEAVAE-C--GAL-GTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-H--Hhc-CCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 8999999999976 48888888764 3443333220 0 011 2234457899999876643
Q ss_pred --CCCCCcceEEEec
Q 004558 718 --LPLETFDSMSHWK 730 (745)
Q Consensus 718 --~~I~~~DavIilT 730 (745)
+.....|.+|-.+
T Consensus 76 ~~~~~~~id~vi~~a 90 (253)
T PRK08217 76 IAEDFGQLNGLINNA 90 (253)
T ss_pred HHHHcCCCCEEEECC
Confidence 1234678888766
No 380
>PRK06482 short chain dehydrogenase; Provisional
Probab=67.78 E-value=21 Score=37.44 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=52.5
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |-+|..++++|.+ .|..|.++... .++.+.+.+ .+. ..+..+.+|.+|.+.+++.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~---~g~~v~~~~r~--~~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLA---RGDRVAATVRR--PDALDDLKA------RYG-DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hcc-CceEEEEccCCCHHHHHHHHHHH
Confidence 57999997 6899999999975 48899888864 455555543 111 1234578999999877642
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|-++
T Consensus 71 ~~~~~~id~vi~~a 84 (276)
T PRK06482 71 FAALGRIDVVVSNA 84 (276)
T ss_pred HHHcCCCCEEEECC
Confidence 234578888875
No 381
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.73 E-value=20 Score=39.46 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=52.3
Q ss_pred ccC-eEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 381 EKN-HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 381 ~k~-HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
.++ -+||.|.+. .|..++++|...+ ..|++.-+|.+..+++.+++.......++.+++.|.++.+..++.
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G------a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~f 104 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG------AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKF 104 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHH
Confidence 444 677788876 5889999998754 678999999877777766654445566788888888888776654
No 382
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=67.70 E-value=22 Score=38.80 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 004558 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (745)
Q Consensus 385 IVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~A~aV 464 (745)
+||||||++|..-+..|...+ ..|++.|-||-..-.+.-+ +..|. +|++| +++++.+
T Consensus 217 ~Vv~GYGdVGKgCaqaLkg~g------~~VivTEiDPI~ALQAaMe------G~~V~----------tm~ea-~~e~dif 273 (434)
T KOG1370|consen 217 AVVCGYGDVGKGCAQALKGFG------ARVIVTEIDPICALQAAME------GYEVT----------TLEEA-IREVDIF 273 (434)
T ss_pred EEEeccCccchhHHHHHhhcC------cEEEEeccCchHHHHHHhh------ccEee----------eHHHh-hhcCCEE
Q ss_pred EEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCH
Q 004558 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNE 508 (745)
Q Consensus 465 Iiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~ 508 (745)
+..|.. .|+..---..++..+. ||..+-.-+.+
T Consensus 274 VTtTGc--------~dii~~~H~~~mk~d~---IvCN~Ghfd~E 306 (434)
T KOG1370|consen 274 VTTTGC--------KDIITGEHFDQMKNDA---IVCNIGHFDTE 306 (434)
T ss_pred EEccCC--------cchhhHHHHHhCcCCc---EEeccccccce
No 383
>PRK12828 short chain dehydrogenase; Provisional
Probab=67.58 E-value=13 Score=37.49 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=49.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++..++ ++.....+ .+....+..+.+|.+|.+.+++.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAA---RGARVALIGRGA--APLSQTLP------GVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHH---CCCeEEEEeCCh--HhHHHHHH------HHhhcCceEEEeecCCHHHHHHHHHH
Confidence 468999998 7899999999965 488999998654 22221111 11111233467999998877542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.++-.+
T Consensus 76 ~~~~~~~~d~vi~~a 90 (239)
T PRK12828 76 VNRQFGRLDALVNIA 90 (239)
T ss_pred HHHHhCCcCEEEECC
Confidence 123578887765
No 384
>PRK07201 short chain dehydrogenase; Provisional
Probab=67.56 E-value=20 Score=42.79 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=52.5
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCH------hhHhc
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIR------RHLES 717 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~------~~L~e 717 (745)
+|+|.|+ |-+|..+++.|.+. ..|.+|+.+...+..++.+.+.. .+....+..+.||.+|. +.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~-~~g~~V~~l~R~~~~~~~~~~~~------~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDR-RREATVHVLVRRQSLSRLEALAA------YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhc-CCCCEEEEEECcchHHHHHHHHH------hcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 6999998 89999999999631 35889999987544444333322 11112245688999984 45665
Q ss_pred CCCCCcceEEEec
Q 004558 718 LPLETFDSMSHWK 730 (745)
Q Consensus 718 ~~I~~~DavIilT 730 (745)
. ..+|.||-+.
T Consensus 75 l--~~~D~Vih~A 85 (657)
T PRK07201 75 L--GDIDHVVHLA 85 (657)
T ss_pred h--cCCCEEEECc
Confidence 4 7899998665
No 385
>PLN00198 anthocyanidin reductase; Provisional
Probab=67.53 E-value=19 Score=39.16 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=51.1
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH--HhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI--AKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l--~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
...|+|.|++. .|..++++|...+ +.|+++.++.+...... ... . ...++.++.||.++.+.+.++ +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG------YAVNTTVRDPENQKKIAHLRAL--Q-ELGDLKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC------CEEEEEECCCCCHHHHHHHHhc--C-CCCceEEEEcCCCChHHHHHH-H
Confidence 45799999654 6999999998754 45554444432221111 111 0 012578899999999988775 4
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
+++|.||-++..
T Consensus 79 ~~~d~vih~A~~ 90 (338)
T PLN00198 79 AGCDLVFHVATP 90 (338)
T ss_pred hcCCEEEEeCCC
Confidence 578999988864
No 386
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=67.46 E-value=20 Score=36.73 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=50.4
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA---- 456 (745)
..++|.|.+. .|..++++|...+ ..|+++++++. .....+.+ .+.++.++.+|.++++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G------~~vi~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAG------ADIVGAGRSEPSETQQQVEA-----LGRRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCchHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHH
Confidence 5688889854 6999999998754 57788877542 22222221 133577889999999887642
Q ss_pred --CcccccEEEEecCC
Q 004558 457 --SVSKARAIIVLASD 470 (745)
Q Consensus 457 --gI~~A~aVIiltdd 470 (745)
.....|.+|-++..
T Consensus 75 ~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 75 VEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12356777776643
No 387
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=67.44 E-value=7.2 Score=42.08 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e 689 (745)
..++++|+|.|..+..++..|... |. +|+|++.+ .+|.+.+++
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~---G~~~I~I~nR~--~~ka~~la~ 169 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTL---GVERLTIFDVD--PARAAALAD 169 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHH
Confidence 347999999999999999999763 54 79999864 688888875
No 388
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=67.39 E-value=15 Score=40.28 Aligned_cols=79 Identities=19% Similarity=0.071 Sum_probs=51.7
Q ss_pred CeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-c
Q 004558 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-K 460 (745)
Q Consensus 383 ~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~-~ 460 (745)
++++|.|. |-.|..+++.|...+ +.|+.++++++.......... ...++.++.||.++.+.++++--+ +
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG------AEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC------CEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcC
Confidence 57999997 557999999999754 567777766543222211110 022467789999999988765221 4
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
.|.||-++..
T Consensus 76 ~d~vih~A~~ 85 (349)
T TIGR02622 76 PEIVFHLAAQ 85 (349)
T ss_pred CCEEEECCcc
Confidence 6888877753
No 389
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=67.27 E-value=21 Score=36.88 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.+.++|.|.+. .|..++++|...+ ..|++++++.+..+...++... .+.++.++..|.++.+.++++-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G------~~vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAG------ASVVVSDINADAANHVVDEIQQ--LGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45677778765 5889999998754 5677788777665554333211 1335778889999998876531
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+-|.+|-++.
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 134577777664
No 390
>PRK08017 oxidoreductase; Provisional
Probab=67.09 E-value=14 Score=38.09 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=42.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 717 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e 717 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++..+ .++.+.+.+. + +..+.+|.+|.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~---~g~~v~~~~r~--~~~~~~~~~~--------~--~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR---RGYRVLAACRK--PDDVARMNSL--------G--FTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHhHHHHhC--------C--CeEEEeecCCHHHHHH
Confidence 57999999 8999999999975 48889888764 3454444331 2 2347789999876654
No 391
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.03 E-value=12 Score=37.99 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=50.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEE-ecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~II-e~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.++.++ ...+ ++.+.+.+. +. . .+..+..+.+|.+|.+.+++.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~---~g~~v~~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAK---EGAKVVIAYDINE--EAAQELLEE-IK--E-EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEcCCCH--HHHHHHHHH-HH--h-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 58999998 7899999999865 48898888 6542 333332220 00 0 122355689999999877552
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 77 ~~~~~~~id~vi~~a 91 (247)
T PRK05565 77 IVEKFGKIDILVNNA 91 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 123578888766
No 392
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.99 E-value=13 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=51.7
Q ss_pred CceEEEEccc-chHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gwg-~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|++ .+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ... ...+..+.+|.++.+.+++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~---~G~~Vi~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAK---EGVNVGLLARTE--ENLKAVAEE-V--EAY-GVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--HHh-CCeEEEEECCCCCHHHHHHHHHH
Confidence 3689999984 789999999975 488999988653 333333220 0 011 12355688999999877552
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 78 ~~~~~~~id~vi~~a 92 (239)
T PRK07666 78 LKNELGSIDILINNA 92 (239)
T ss_pred HHHHcCCccEEEEcC
Confidence 124678888765
No 393
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.85 E-value=20 Score=36.91 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=52.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |-+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ... +..+..+.+|.+|.+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~---~G~~v~~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELAR---AGAAVAIADLNQ--DGANAVADE-I--NKA-GGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCeEEEEeCCh--HHHHHHHHH-H--Hhc-CceEEEEECCCCCHHHHHHHHHH
Confidence 368999999 7899999999976 488999888654 332222210 0 011 22355689999999987642
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-++
T Consensus 78 ~~~~~~~~d~vi~~a 92 (262)
T PRK13394 78 VAERFGSVDILVSNA 92 (262)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578887766
No 394
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=66.81 E-value=24 Score=36.09 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCC-eEEEEecCCc----hHHHHH-hhcCCCC--------c-CCCCCceEEEEE
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPE----KEREKK-LTDGGLD--------I-SGLMNIKLVHRE 706 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~-~v~IIe~~p~----~er~~~-l~e~g~~--------~-~~L~~~~V~~i~ 706 (745)
...+|+|+|.|-.|..++..|.+. |. ++++++.+.. -.|... ..+.|-. . ..-+++.+..+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA---GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 456899999999999999999764 77 6999987511 111100 0010100 0 012345555555
Q ss_pred cCcCCHhhHhcCCCCCcceEEEecCc
Q 004558 707 GNAVIRRHLESLPLETFDSMSHWKTR 732 (745)
Q Consensus 707 GD~td~~~L~e~~I~~~DavIilTd~ 732 (745)
.+.+. +.+.+. ++++|.||-.+|.
T Consensus 97 ~~i~~-~~~~~~-~~~~DlVi~a~Dn 120 (200)
T TIGR02354 97 EKITE-ENIDKF-FKDADIVCEAFDN 120 (200)
T ss_pred eeCCH-hHHHHH-hcCCCEEEECCCC
Confidence 55543 444433 6789999988743
No 395
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=66.78 E-value=14 Score=40.23 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCc---hHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~---~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~ 718 (745)
.++|||.|+ |-+|..++++|.+ .|.+|.++...+. .++.+.+.+.. ......+.++.+|.+|.+.+++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS---KGYEVHGIIRRSSNFNTQRLDHIYIDP----HPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---CCCEEEEEecccccccccchhhhcccc----ccccCceEEEEecCCCHHHHHHH
Confidence 368999998 7899999999976 4889998875321 12222222100 00122355689999999887653
Q ss_pred CCC--CcceEEEec
Q 004558 719 PLE--TFDSMSHWK 730 (745)
Q Consensus 719 ~I~--~~DavIilT 730 (745)
++ ..|.||-++
T Consensus 79 -~~~~~~d~Vih~A 91 (340)
T PLN02653 79 -LDDIKPDEVYNLA 91 (340)
T ss_pred -HHHcCCCEEEECC
Confidence 22 368888776
No 396
>PLN02494 adenosylhomocysteinase
Probab=66.70 E-value=18 Score=41.93 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=30.8
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le 425 (745)
...++|+|+|..|..+++.+...+ ..|+++|.++....
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~G------a~VIV~e~dp~r~~ 291 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAG------ARVIVTEIDPICAL 291 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchhhH
Confidence 568999999999999999987543 57888999886533
No 397
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.70 E-value=11 Score=41.28 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=33.1
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhc
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e 689 (745)
+|.|+|.|..|..++..|.+ .|.+|++++.+ .++.+.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~---~G~~V~~~~r~--~~~~~~i~~ 45 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS---KGVPVRLWARR--PEFAAALAA 45 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH
Confidence 79999999999999999976 38899999964 466666654
No 398
>PLN02366 spermidine synthase
Probab=66.61 E-value=53 Score=36.02 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=51.9
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~---~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (745)
...+|+|+|.|. | .+++++.... ....|+++|.|++.++...+.+. ..+.+.++.++.||+.. .+++..
T Consensus 91 ~pkrVLiIGgG~-G-~~~rellk~~----~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGD-G-GVLREIARHS----SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--FLKNAP 162 (308)
T ss_pred CCCeEEEEcCCc-c-HHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--HHhhcc
Confidence 357899999997 3 3567776432 22568899999976665433221 11345679999999754 233332
Q ss_pred cccccEEEEecCC
Q 004558 458 VSKARAIIVLASD 470 (745)
Q Consensus 458 I~~A~aVIiltdd 470 (745)
-++-|.||+-..+
T Consensus 163 ~~~yDvIi~D~~d 175 (308)
T PLN02366 163 EGTYDAIIVDSSD 175 (308)
T ss_pred CCCCCEEEEcCCC
Confidence 2468999986543
No 399
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=66.58 E-value=12 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e 689 (745)
.-++++|+|.|-.+..++..|.+. | .+++|++.. .+|.++|++
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~---g~~~i~V~NRt--~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEA---GAKRITVVNRT--RERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCC--HHHHHHHHH
Confidence 357899999999999999999764 6 689999974 689999886
No 400
>PRK09242 tropinone reductase; Provisional
Probab=66.56 E-value=21 Score=36.98 Aligned_cols=81 Identities=6% Similarity=-0.002 Sum_probs=54.2
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc----
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e---- 717 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. +. ...++..+.++.+|.+|++.+++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~---~G~~v~~~~r~--~~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLG---LGADVLIVARD--ADALAQARDE-LA-EEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHHH-HH-hhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999998 6789999999976 48899998864 3444444320 00 01223456678999999876543
Q ss_pred --CCCCCcceEEEec
Q 004558 718 --LPLETFDSMSHWK 730 (745)
Q Consensus 718 --~~I~~~DavIilT 730 (745)
......|.+|...
T Consensus 82 ~~~~~g~id~li~~a 96 (257)
T PRK09242 82 VEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHcCCCCEEEECC
Confidence 1234678888777
No 401
>PRK06198 short chain dehydrogenase; Provisional
Probab=66.45 E-value=21 Score=36.91 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=52.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeE-EEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVI-VVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~i-VVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--g 457 (745)
.+.++|.|.+. .|..++++|...+ .. |++++++++..+.....+ ...+.++.++.+|.++++.++++ .
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERG------AAGLVICGRNAEKGEAQAAEL--EALGAKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC------CCeEEEEcCCHHHHHHHHHHH--HhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 35688998754 6889999998653 34 788888776555433322 01134577888999998877664 1
Q ss_pred ----cccccEEEEecC
Q 004558 458 ----VSKARAIIVLAS 469 (745)
Q Consensus 458 ----I~~A~aVIiltd 469 (745)
....|.+|-++.
T Consensus 78 ~~~~~g~id~li~~ag 93 (260)
T PRK06198 78 ADEAFGRLDALVNAAG 93 (260)
T ss_pred HHHHhCCCCEEEECCC
Confidence 124677777764
No 402
>PRK07069 short chain dehydrogenase; Validated
Probab=66.43 E-value=21 Score=36.49 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=47.7
Q ss_pred EEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 004558 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (745)
Q Consensus 385 IVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d-~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg----- 457 (745)
++|.|.+. .|..+++.|...+ ..|++++++ ++..+...+++........+.++.+|.++++.++++=
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQG------AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD 75 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCC------CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH
Confidence 68888655 6899999998643 567788776 5444444332211011123456778888888776531
Q ss_pred -cccccEEEEecC
Q 004558 458 -VSKARAIIVLAS 469 (745)
Q Consensus 458 -I~~A~aVIiltd 469 (745)
....|.+|-++.
T Consensus 76 ~~~~id~vi~~ag 88 (251)
T PRK07069 76 AMGGLSVLVNNAG 88 (251)
T ss_pred HcCCccEEEECCC
Confidence 224577776654
No 403
>PRK06179 short chain dehydrogenase; Provisional
Probab=66.43 E-value=9.5 Score=39.82 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=49.2
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |.+|..++++|.+ .|.+|.++..++ ++.+ ...++ .++.+|.+|.+.++++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~---~g~~V~~~~r~~--~~~~----------~~~~~--~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR---AGYRVFGTSRNP--ARAA----------PIPGV--ELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH---CCCEEEEEeCCh--hhcc----------ccCCC--eeEEeecCCHHHHHHHHHHH
Confidence 57999998 6789999999976 489999988643 2211 12233 3578999999887652
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 68 ~~~~g~~d~li~~a 81 (270)
T PRK06179 68 IARAGRIDVLVNNA 81 (270)
T ss_pred HHhCCCCCEEEECC
Confidence 123568888776
No 404
>PRK09135 pteridine reductase; Provisional
Probab=66.40 E-value=18 Score=36.85 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=51.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |-+|..+++.|.+ .|.+|.++.... ++..+.+.+. + .......+.++.+|.+|++.+++.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~---~g~~v~~~~r~~-~~~~~~~~~~-~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHA---AGYRVAIHYHRS-AAEADALAAE-L--NALRPGSAAALQADLLDPDALPELVAAC 79 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH-H--HhhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 68999998 6789999999976 489999987532 2333333210 0 011112244688999998877642
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.++-++
T Consensus 80 ~~~~~~~d~vi~~a 93 (249)
T PRK09135 80 VAAFGRLDALVNNA 93 (249)
T ss_pred HHHcCCCCEEEECC
Confidence 123568888766
No 405
>PRK08264 short chain dehydrogenase; Validated
Probab=66.40 E-value=22 Score=36.10 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=49.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCC-eEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc--C
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES--L 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~-~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e--~ 718 (745)
.++++|.|+ |.+|..+++.|.+ .|. .|.++...+ ++.+. . ...+..+.+|.+|.+.+++ +
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~---~G~~~V~~~~r~~--~~~~~--~---------~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLA---RGAAKVYAAARDP--ESVTD--L---------GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCcccEEEEecCh--hhhhh--c---------CCceEEEEecCCCHHHHHHHHH
Confidence 468999997 7899999999976 477 888888643 22221 1 1124457899999888765 2
Q ss_pred CCCCcceEEEec
Q 004558 719 PLETFDSMSHWK 730 (745)
Q Consensus 719 ~I~~~DavIilT 730 (745)
.....|.+|-..
T Consensus 70 ~~~~id~vi~~a 81 (238)
T PRK08264 70 AASDVTILVNNA 81 (238)
T ss_pred hcCCCCEEEECC
Confidence 234578887665
No 406
>PRK08628 short chain dehydrogenase; Provisional
Probab=66.35 E-value=19 Score=37.12 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=51.6
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI-- 458 (745)
.+.++|.|.+. .|..++++|.+.+ ..|+++.++++.. ...++.. ..+.++.++.+|.++++.++++=-
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G------~~v~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEG------AIPVIFGRSAPDD-EFAEELR--ALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC------CcEEEEcCChhhH-HHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788888764 6999999998654 5677777766544 2222211 013457889999999988776411
Q ss_pred ----ccccEEEEecC
Q 004558 459 ----SKARAIIVLAS 469 (745)
Q Consensus 459 ----~~A~aVIiltd 469 (745)
...|.+|-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 24577777765
No 407
>PRK06197 short chain dehydrogenase; Provisional
Probab=66.19 E-value=20 Score=38.43 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=53.2
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~-- 718 (745)
..+.++|.|+ |-+|..+++.|.+ .|.+|.++..+ .++.+...+. +. ...++..+..+.+|.+|.+.+++.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~---~G~~vi~~~r~--~~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAA---KGAHVVLAVRN--LDKGKAAAAR-IT-AATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHHH-HH-HhCCCCceEEEECCCCCHHHHHHHHH
Confidence 4478999998 6799999999976 48888888754 3443322110 00 011233455688999999877542
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 88 ~~~~~~~~iD~li~nA 103 (306)
T PRK06197 88 ALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHhhCCCCCEEEECC
Confidence 234678888765
No 408
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.19 E-value=22 Score=36.11 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=52.4
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg---- 457 (745)
.+++|.|.+. .|..++++|.+.+ ..|++..++++..+.+..+... ..++.++.+|.++++.++++-
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEG------AQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 5889999865 6889999998654 5788888887766554332210 124778899999988876531
Q ss_pred --cccccEEEEecC
Q 004558 458 --VSKARAIIVLAS 469 (745)
Q Consensus 458 --I~~A~aVIiltd 469 (745)
....+.+|..+.
T Consensus 77 ~~~~~id~ii~~ag 90 (238)
T PRK05786 77 KVLNAIDGLVVTVG 90 (238)
T ss_pred HHhCCCCEEEEcCC
Confidence 123466666654
No 409
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=66.09 E-value=8.5 Score=44.41 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=29.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..++|+|+|+|..|...+..|.+ .|.+|+|+|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~---~G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR---AGHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh---CCCcEEEEecC
Confidence 45699999999999999999976 48899999964
No 410
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=66.04 E-value=1.2e+02 Score=35.29 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=27.7
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e 422 (745)
..+++|+|.|+.+..+++.+..+.. .+-.+|-++|.++.
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~~~--~g~~vVGfIDd~~~ 184 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSEEM--MGFDVIAFFDTDAS 184 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhCcc--CCcEEEEEEcCCcc
Confidence 3579999999999999999975321 12256667776543
No 411
>COG2985 Predicted permease [General function prediction only]
Probab=65.99 E-value=5.1 Score=45.97 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=44.4
Q ss_pred CCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 004558 561 WPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (745)
Q Consensus 561 ~p~lvG~tf~El~~~~-~~aivIGI~r~~~~g~v~lnP~~dtvI~~GD~LiVIa~~~~~~~~ 621 (745)
.|++.|+.++|+-... .++++=-++| ++...+|++|++++.||++-++|.+++..+.
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~ 268 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARL 268 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHH
Confidence 5789999999998643 3344444554 4577899999999999999999999876554
No 412
>PRK05993 short chain dehydrogenase; Provisional
Probab=65.93 E-value=17 Score=38.31 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 720 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~I 720 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+. + +..+.+|.+|.+.+++. .+
T Consensus 5 k~vlItGasggiG~~la~~l~~---~G~~Vi~~~r~--~~~~~~l~~~--------~--~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS---DGWRVFATCRK--EEDVAALEAE--------G--LEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHHC--------C--ceEEEccCCCHHHHHHHHHHH
Confidence 57999999 7899999999975 48999998864 4555555431 2 33578999998766442 11
Q ss_pred -----CCcceEEEec
Q 004558 721 -----ETFDSMSHWK 730 (745)
Q Consensus 721 -----~~~DavIilT 730 (745)
+..|.+|...
T Consensus 70 ~~~~~g~id~li~~A 84 (277)
T PRK05993 70 LELSGGRLDALFNNG 84 (277)
T ss_pred HHHcCCCccEEEECC
Confidence 3568887754
No 413
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.91 E-value=23 Score=34.61 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=33.9
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 690 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~ 690 (745)
.+|-|+|-|+.|..|++.|.+ .|.+|++.+. ..++++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~---~g~~v~~~d~--~~~~~~~~~~~ 43 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK---AGYEVTVYDR--SPEKAEALAEA 43 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH---TTTEEEEEES--SHHHHHHHHHT
T ss_pred CEEEEEchHHHHHHHHHHHHh---cCCeEEeecc--chhhhhhhHHh
Confidence 479999999999999999975 4999999985 46888888763
No 414
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=65.90 E-value=22 Score=44.79 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
...+||+|+|+|.-|...|..|.. .|.+|+++|..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~---~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR---SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh---CCCeEEEEccc
Confidence 356899999999999999999976 49999999963
No 415
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.81 E-value=20 Score=36.93 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=52.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCCC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
++++|.|+ |.+|..+++.|.+ .|..|.++...+ +..+.+.+.. .-....+..+.+|.+|.+.++++--..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~---~G~~v~~~~r~~--~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLAR---KGHNVIAGVQIA--PQVTALRAEA----ARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHH----HhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 47999998 6789999999975 488888877643 3333333200 001122446889999999887753337
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
.|.+|..+
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 88888764
No 416
>PRK09186 flagellin modification protein A; Provisional
Probab=65.79 E-value=16 Score=37.68 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=51.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+. ..+..-.+..+.+|.+|.+.+++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~---~g~~v~~~~r~--~~~~~~~~~-~l~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILE---AGGIVIAADID--KEALNELLE-SLG-KEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEecC--hHHHHHHHH-HHH-hhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 368999998 6799999999975 48899888754 344443332 000 011122233468999999877652
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-..
T Consensus 77 ~~~~~~~id~vi~~A 91 (256)
T PRK09186 77 SAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHcCCccEEEECC
Confidence 123368888665
No 417
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.79 E-value=14 Score=42.10 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=50.2
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
..+++|+|.|..|..+++.|...+ ..|+++|.+. +.+++..+++ ...++.++.++..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G------~~V~~~d~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG------AKVILTDEKEEDQLKEALEEL----GELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchHHHHHHHHHH----HhcCCEEEeCCcchh------Hhhc
Confidence 468999999999999999998754 7889998875 3343322222 123466777877662 2356
Q ss_pred ccEEEEecCC
Q 004558 461 ARAIIVLASD 470 (745)
Q Consensus 461 A~aVIiltdd 470 (745)
+|.||..+..
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 8888887753
No 418
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=65.73 E-value=23 Score=33.75 Aligned_cols=108 Identities=25% Similarity=0.240 Sum_probs=50.5
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
.+.+|-|+|.|++|..|.+.|...+ +.|+-+ .++++..+++...+ ++. ...++.++ ++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag------~~v~~v~srs~~sa~~a~~~~-------------~~~-~~~~~~~~-~~ 67 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG------HEVVGVYSRSPASAERAAAFI-------------GAG-AILDLEEI-LR 67 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT------SEEEEESSCHH-HHHHHHC---------------TT------TTGG-GC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC------CeEEEEEeCCccccccccccc-------------ccc-cccccccc-cc
Confidence 4679999999999999999998764 445544 55554444443211 110 11123222 56
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHH---HHHcCC
Q 004558 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPL---VKLVGG 516 (745)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~NI~~~Lsar~l~p~~~~~IIArv~d~e~~~~---l~~aGa 516 (745)
+||.+++.++| |+..- ++-.+.......+.++|+...-.-..+. ++..|+
T Consensus 68 ~aDlv~iavpD------daI~~-va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 68 DADLVFIAVPD------DAIAE-VAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp C-SEEEE-S-C------CHHHH-HHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-
T ss_pred cCCEEEEEech------HHHHH-HHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCC
Confidence 89999999964 43221 2222222210112368888765444333 334554
No 419
>PRK06196 oxidoreductase; Provisional
Probab=65.66 E-value=21 Score=38.58 Aligned_cols=75 Identities=7% Similarity=-0.015 Sum_probs=53.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+.+ +..+.+|.+|.+.+++.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~---~G~~Vv~~~R~--~~~~~~~~~------~l~~--v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQ---AGAHVIVPARR--PDVAREALA------GIDG--VEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------Hhhh--CeEEEccCCCHHHHHHHHHH
Confidence 468999998 6789999999976 48899998864 455554443 2333 34588999999876542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 93 ~~~~~~~iD~li~nA 107 (315)
T PRK06196 93 FLDSGRRIDILINNA 107 (315)
T ss_pred HHhcCCCCCEEEECC
Confidence 135678888755
No 420
>PRK05884 short chain dehydrogenase; Provisional
Probab=65.62 E-value=16 Score=37.45 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=49.7
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC-
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL- 720 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~I- 720 (745)
+++|.|+ |.+|..+++.|.+ .|.+|.++... .++.+.+.+ .+ + +..+.+|.+|++.+++. .+
T Consensus 2 ~vlItGas~giG~~ia~~l~~---~g~~v~~~~r~--~~~~~~~~~------~~-~--~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN---DGHKVTLVGAR--RDDLEVAAK------EL-D--VDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------hc-c--CcEEecCCCCHHHHHHHHHHHh
Confidence 5889988 6899999999975 48899998753 456655544 22 2 23578999999887653 11
Q ss_pred CCcceEEEe
Q 004558 721 ETFDSMSHW 729 (745)
Q Consensus 721 ~~~DavIil 729 (745)
+..|.+|-.
T Consensus 68 ~~id~lv~~ 76 (223)
T PRK05884 68 HHLDTIVNV 76 (223)
T ss_pred hcCcEEEEC
Confidence 246887765
No 421
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.62 E-value=21 Score=42.15 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=29.8
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..-++|+|+|+|..|...+..|.+. |.+|+++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 3457999999999999999999764 8899999953
No 422
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=65.61 E-value=25 Score=36.61 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
..++|.|.+. .|..++++|.+.+ ..|+++ .++++..+....+... ..+.++.++..|.++++.++++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G------~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSG------VNIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHHH
Confidence 4788888866 5899999999754 456665 4556555544332211 1134677888899888876653
No 423
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.56 E-value=25 Score=35.62 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc---
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES--- 717 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e--- 717 (745)
..++++|.|+ |.+|..+++.|.+. |.+|.++...+.+.-.....+. +-.+..+..+.+|.+|.+.+.+
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~---G~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ---GANVVINYASSEAGAEALVAEI-----GALGGKALAVQGDVSDAESVERAVD 75 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCchhHHHHHHHHH-----HhcCCceEEEEcCCCCHHHHHHHHH
Q ss_pred ---CCCCCcceEEEec
Q 004558 718 ---LPLETFDSMSHWK 730 (745)
Q Consensus 718 ---~~I~~~DavIilT 730 (745)
......|.+|..+
T Consensus 76 ~~~~~~~~id~vi~~a 91 (248)
T PRK05557 76 EAKAEFGGVDILVNNA 91 (248)
T ss_pred HHHHHcCCCCEEEECC
No 424
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=65.55 E-value=16 Score=36.85 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=49.1
Q ss_pred EEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC--C
Q 004558 646 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE--T 722 (745)
Q Consensus 646 ILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~--~ 722 (745)
|+|+|+ |-+|..++++|.+ .|.+|..+...+..+..... +. + +.+..+|.+|.+.+++. ++ .
T Consensus 1 IlI~GatG~iG~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~--------~~-~--~~~~~~dl~~~~~~~~~-~~~~~ 65 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLK---KGHEVIVLSRSSNSESFEEK--------KL-N--VEFVIGDLTDKEQLEKL-LEKAN 65 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTTEEEEEESCSTGGHHHHH--------HT-T--EEEEESETTSHHHHHHH-HHHHT
T ss_pred EEEEccCCHHHHHHHHHHHH---cCCccccccccccccccccc--------cc-e--EEEEEeecccccccccc-ccccC
Confidence 789997 7899999999976 48887777765332211111 01 2 45689999999998874 33 4
Q ss_pred cceEEEec
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 ~DavIilT 730 (745)
+|.|+-+.
T Consensus 66 ~d~vi~~a 73 (236)
T PF01370_consen 66 IDVVIHLA 73 (236)
T ss_dssp ESEEEEEB
T ss_pred ceEEEEee
Confidence 59999887
No 425
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=65.49 E-value=25 Score=38.13 Aligned_cols=81 Identities=21% Similarity=0.079 Sum_probs=53.9
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
+.+++|.|++. .|..++++|...+ ...|+++.++.+..++..+++. ..+..+.++..|.++.+.++++-
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-----~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-----EWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45889999876 6889999998642 1567778887776665544331 12345777889999998876542
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
..+-|.+|..+.
T Consensus 76 ~~~~~~iD~lI~nAG 90 (314)
T TIGR01289 76 RESGRPLDALVCNAA 90 (314)
T ss_pred HHhCCCCCEEEECCC
Confidence 124566776554
No 426
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=65.43 E-value=17 Score=39.37 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=48.5
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc-hHHHHHhhcCCCCcCCCCC---ceEEEEEcCcCCHhhHhcC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMN---IKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~-~er~~~l~e~g~~~~~L~~---~~V~~i~GD~td~~~L~e~ 718 (745)
.++++|+|.|-.+..++..|... .-.+++|++..+. .+|.+.|++ .+.. ..+.. . +..+.+.+++
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~--g~~~i~i~nRt~~~~~ka~~la~------~~~~~~~~~~~~-~-~~~~~~~l~~- 192 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIE--GLKEIKLFNRRDEFFDKALAFAQ------RVNENTDCVVTV-T-DLADQQAFAE- 192 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCccHHHHHHHHHH------HhhhccCceEEE-e-chhhhhhhhh-
Confidence 46899999999999988888652 2358999997643 468888876 2221 11111 1 1111122332
Q ss_pred CCCCcceEEEec
Q 004558 719 PLETFDSMSHWK 730 (745)
Q Consensus 719 ~I~~~DavIilT 730 (745)
.+.++|.||-.|
T Consensus 193 ~~~~aDivINaT 204 (288)
T PRK12749 193 ALASADILTNGT 204 (288)
T ss_pred hcccCCEEEECC
Confidence 467899998887
No 427
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=65.42 E-value=12 Score=42.62 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
.+++|+|+|+|.+|..+|..|.+ .|.+|++++..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~---~g~~Vtli~~~ 189 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNK---LGSKVTVLDAA 189 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH---cCCeEEEEecC
Confidence 35799999999999999999976 48999999863
No 428
>PRK06484 short chain dehydrogenase; Validated
Probab=65.41 E-value=18 Score=41.80 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=46.2
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
.++++|.|.+. .|..++++|...+ ..|++++++++.++...++. +.++.++.+|.++++.++++
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 333 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAG------DRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESA 333 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHH
Confidence 45788888776 5889999998754 57888898887776654432 23456678888888776553
No 429
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=65.31 E-value=30 Score=36.92 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCch-HHHHH-hhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~-er~~~-l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
.+++||++|+|.-+ +++++.++ .+..+++++|.++.- +.+++ +... . ..+++..+..+++|+. +.|++.
T Consensus 72 ~p~~VL~iG~G~G~--~~~~ll~~-~~~~~v~~veid~~vi~~a~~~~~~~--~-~~~~~~~v~i~~~D~~--~~l~~~- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGG--VLREVLKH-KSVEKATLVDIDEKVIELSKKFLPSL--A-GSYDDPRVDLQIDDGF--KFLADT- 142 (270)
T ss_pred CCCEEEEEcCCchH--HHHHHHhC-CCcceEEEEeCCHHHHHHHHHHhHhh--c-ccccCCceEEEECchH--HHHHhC-
Confidence 45699999998754 34444333 234689999976422 11222 1110 0 1233334555677773 455553
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
-+.||.||+=.
T Consensus 143 ~~~yDvIi~D~ 153 (270)
T TIGR00417 143 ENTFDVIIVDS 153 (270)
T ss_pred CCCccEEEEeC
Confidence 36899998743
No 430
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=65.29 E-value=16 Score=39.14 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=51.8
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCC---ceEEEEEcCcCCHhhHhc
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMN---IKLVHREGNAVIRRHLES 717 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~---~~V~~i~GD~td~~~L~e 717 (745)
..++++|-|. +-+|..+++.|.+ +|.++.++.. +++|-+.|++ ++++ ..+.++..|.+|.+.+++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~---~g~~liLvaR--~~~kL~~la~------~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLAR---RGYNLILVAR--REDKLEALAK------ELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHH---CCCEEEEEeC--cHHHHHHHHH------HHHHhhCceEEEEECcCCChhHHHH
Confidence 4579999999 5689999999986 4999999996 4788887775 3433 457779999998887765
No 431
>PRK05875 short chain dehydrogenase; Provisional
Probab=65.29 E-value=16 Score=38.27 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=51.4
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~-~~~V~~i~GD~td~~~L~e~-- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. +. ... ...+..+.+|.+|.+.+++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~---~G~~V~~~~r~~--~~~~~~~~~-l~--~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVA---AGAAVMIVGRNP--DKLAAAAEE-IE--ALKGAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHHH-HH--hccCCCceEEEEcCCCCHHHHHHHHH
Confidence 468999998 7899999999975 488999988643 333222210 00 010 12344578999998876542
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 79 ~~~~~~~~~d~li~~a 94 (276)
T PRK05875 79 AATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHcCCCCEEEECC
Confidence 123578888765
No 432
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=65.28 E-value=12 Score=42.83 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
+++++|+|+|.+|..++..|.+. |.+|++++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~---g~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL---GSETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCcEEEEecC
Confidence 57999999999999999999864 8999999864
No 433
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.27 E-value=15 Score=44.29 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=30.1
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..++|+|+|+|..|...|..|.+. |.+|+|+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~---G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN---GVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecC
Confidence 457999999999999999999864 8999999975
No 434
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=65.20 E-value=23 Score=36.48 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred eEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-----
Q 004558 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 718 (745)
Q Consensus 645 rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~----- 718 (745)
+++|.|+ |.+|..+++.|.+ .|.+|.+++.. +++.+.+.+ .+ +..+..+.+|.+|.+.+++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~---~G~~V~~~~r~--~~~~~~~~~------~~-~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQ---QGHKVIATGRR--QERLQELKD------EL-GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred EEEEECCCchHHHHHHHHHHH---CCCEEEEEECC--HHHHHHHHH------Hh-ccceEEEEecCCCHHHHHHHHHHHH
Confidence 6899997 7799999999976 48999999865 344444433 11 11344578999999877542
Q ss_pred -CCCCcceEEEec
Q 004558 719 -PLETFDSMSHWK 730 (745)
Q Consensus 719 -~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 70 ~~~~~id~vi~~a 82 (248)
T PRK10538 70 AEWRNIDVLVNNA 82 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678888654
No 435
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=65.18 E-value=14 Score=40.34 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.3
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 691 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g 691 (745)
.||.|+|.|.+|..++..|.+. |.+|++++.. ++.+.+.+.|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~---G~~V~~~~r~---~~~~~~~~~g 44 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA---GADVTLIGRA---RIGDELRAHG 44 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc---CCcEEEEecH---HHHHHHHhcC
Confidence 3799999999999999999763 8899999853 2334455444
No 436
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=65.14 E-value=21 Score=37.03 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=51.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ +.+|..+++.|.+ .|.+|.++.....++-.+.+.+ + +..+..+.+|.+|++.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~---~G~~vv~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAK---AGADIVGVGVAEAPETQAQVEA-------L-GRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHH-------c-CCeEEEEEeCCCCHHHHHHHHHH
Confidence 468999998 4689999999976 4999988875422222233322 1 12345688999999877652
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
..+..|.+|-..
T Consensus 77 ~~~~~g~iD~lv~~a 91 (251)
T PRK12481 77 AVEVMGHIDILINNA 91 (251)
T ss_pred HHHHcCCCCEEEECC
Confidence 134578877654
No 437
>PRK06181 short chain dehydrogenase; Provisional
Probab=65.07 E-value=16 Score=37.95 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.+++.++ +..+.+.+. + ... +..+.++.+|.+|.+.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~---~g~~Vi~~~r~~--~~~~~~~~~-l--~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLAR---AGAQLVLAARNE--TRLASLAQE-L--ADH-GGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999 7799999999965 488999988653 232322210 0 011 22355678999998876542
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 73 ~~~~~~id~vi~~a 86 (263)
T PRK06181 73 VARFGGIDILVNNA 86 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 123678888776
No 438
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=65.01 E-value=14 Score=39.72 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCC-CeEEEEecCCchHHHHHhhc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g-~~v~IIe~~p~~er~~~l~e 689 (745)
..++++|+|.|..+..++..|.+. | .+|+|++.. .+|.+.|++
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~---G~~~i~I~nRt--~~ka~~La~ 167 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASL---GVTDITVINRN--PDKLSRLVD 167 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHc---CCCeEEEEeCC--HHHHHHHHH
Confidence 346899999999999999999763 5 479999964 688888886
No 439
>PLN02572 UDP-sulfoquinovose synthase
Probab=65.01 E-value=20 Score=41.05 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCC--ch----------------HHHHHhhcCCCCcCCCCCceE
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EK----------------EREKKLTDGGLDISGLMNIKL 702 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p--~~----------------er~~~l~e~g~~~~~L~~~~V 702 (745)
..++|||.|+ |-+|..+++.|.+ .|.+|++++... .. ++.+.+.+ ..+..+
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~v 115 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSK---RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKE-------VSGKEI 115 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHH---CCCeEEEEeccccccccccccccccccccchHHHHHHHHH-------hhCCcc
Confidence 4568999998 8899999999976 488999986311 00 11111110 011124
Q ss_pred EEEEcCcCCHhhHhcCCCC--CcceEEEec
Q 004558 703 VHREGNAVIRRHLESLPLE--TFDSMSHWK 730 (745)
Q Consensus 703 ~~i~GD~td~~~L~e~~I~--~~DavIilT 730 (745)
.++.||.+|.+.+++. +. +.|.||-++
T Consensus 116 ~~v~~Dl~d~~~v~~~-l~~~~~D~ViHlA 144 (442)
T PLN02572 116 ELYVGDICDFEFLSEA-FKSFEPDAVVHFG 144 (442)
T ss_pred eEEECCCCCHHHHHHH-HHhCCCCEEEECC
Confidence 5688999999888763 22 479999877
No 440
>PRK07806 short chain dehydrogenase; Provisional
Probab=64.91 E-value=23 Score=36.34 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=49.7
Q ss_pred CeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 383 ~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~-e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
..++|+|++ ..|..++++|...+ +.|+++.++. +..+....++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG------AHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC------CEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 578899974 57999999998653 5676666543 233332222110 1335788999999999876531
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
....|.+|..+.
T Consensus 79 ~~~~~~~d~vi~~ag 93 (248)
T PRK07806 79 REEFGGLDALVLNAS 93 (248)
T ss_pred HHhCCCCcEEEECCC
Confidence 124677776653
No 441
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.88 E-value=17 Score=37.94 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=51.8
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC-
Q 004558 643 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (745)
Q Consensus 643 ~~rILI~Gw---g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~- 718 (745)
.+.++|.|+ +.+|..+++.|.+ .|..|.+....+.++..+.+.+ .+.. .+..+..|.+|++..++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~---~G~~v~l~~r~~~~~~~~~~~~------~~~~-~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQE---QGAEVVLTGFGRALRLTERIAK------RLPE-PAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHH---CCCEEEEecCccchhHHHHHHH------hcCC-CCcEEeCCCCCHHHHHHHH
Confidence 368999996 6899999999975 5889988864332344444443 2222 233578999999876532
Q ss_pred -----CCCCcceEEEec
Q 004558 719 -----PLETFDSMSHWK 730 (745)
Q Consensus 719 -----~I~~~DavIilT 730 (745)
.....|.+|...
T Consensus 77 ~~~~~~~g~iD~li~nA 93 (256)
T PRK07889 77 DRVREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHHHcCCCcEEEEcc
Confidence 235678877644
No 442
>PRK12746 short chain dehydrogenase; Provisional
Probab=64.83 E-value=26 Score=36.01 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=52.6
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVL-iD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
+.++|.|.+. .|..++++|.+.+ ..|++ ..++.+..++..++... .+..+.++.+|.++++.+.++-
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G------~~v~i~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDG------ALVAIHYGRNKQAADETIREIES--NGGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCcCCHHHHHHHHHHH
Confidence 5889999765 6899999998643 45555 46666555544433210 1335788999999999876641
Q ss_pred ---------cccccEEEEecCC
Q 004558 458 ---------VSKARAIIVLASD 470 (745)
Q Consensus 458 ---------I~~A~aVIiltdd 470 (745)
..+.|.+|-++..
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHhccccCCCCccEEEECCCC
Confidence 1357888876643
No 443
>PLN02253 xanthoxin dehydrogenase
Probab=64.80 E-value=20 Score=37.74 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=51.8
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC-CceEEEEEcCcCCHhhHhcC--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~-~~~V~~i~GD~td~~~L~e~-- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.++...+ +..+.+.+ .+. ...+..+.+|.+|.+.+++.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~---~G~~v~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHK---HGAKVCIVDLQD--DLGQNVCD------SLGGEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHH------HhcCCCceEEEEeecCCHHHHHHHHH
Confidence 468999998 5689999999976 489999987542 33333332 111 12345688999999887652
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|-..
T Consensus 87 ~~~~~~g~id~li~~A 102 (280)
T PLN02253 87 FTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124678888765
No 444
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=64.76 E-value=34 Score=40.36 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=46.8
Q ss_pred cccccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 004558 378 EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 378 ~v~~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (745)
+...+..++|+|+|+.|..+++++....+ ..+|-.+|.|+...... . .++. +.|.-.-++..++-+
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~----~~pV~fiDdd~~~~g~~-------i--~Gv~-V~g~~~i~~~v~~~~ 177 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPE----YTPVAFLDDDPDLTGMK-------I--RGVP-VLGRIEIERVVEELG 177 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCC----cceEEEECCChhhcCCE-------E--ecee-eechhHHHHHHHHcC
Confidence 33457799999999999999999987653 47888899988542211 1 1343 445444666777776
Q ss_pred cc
Q 004558 458 VS 459 (745)
Q Consensus 458 I~ 459 (745)
++
T Consensus 178 ~~ 179 (588)
T COG1086 178 IQ 179 (588)
T ss_pred Cc
Confidence 66
No 445
>PRK07023 short chain dehydrogenase; Provisional
Probab=64.67 E-value=17 Score=37.35 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=42.2
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
++++|.|.+. .|..++++|.+.+ ..|++++++++. ..... .+.++.++.+|.++.+.++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G------~~v~~~~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 63 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG------IAVLGVARSRHP--SLAAA-----AGERLAEVELDLSDAAAAAAW 63 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC------CEEEEEecCcch--hhhhc-----cCCeEEEEEeccCCHHHHHHH
Confidence 3789999855 6899999998643 567777766542 11111 134678889999999888773
No 446
>PRK07904 short chain dehydrogenase; Provisional
Probab=64.67 E-value=20 Score=37.44 Aligned_cols=83 Identities=8% Similarity=-0.099 Sum_probs=49.5
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHh----
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE---- 716 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~---- 716 (745)
..++++|.|+ |.+|..++++|.+. .|.+|.++..+++. +.+.+.+. + ....+..+..+.+|.+|.+..+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~-~~~~~~~~-l--~~~~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDP-RRDAAVAQ-M--KAAGASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcch-hHHHHHHH-H--HhcCCCceEEEEecCCChHHHHHHHH
Confidence 4568999998 56899999998653 24899988765422 12222210 0 0111223556889999877533
Q ss_pred cC-CCCCcceEEEec
Q 004558 717 SL-PLETFDSMSHWK 730 (745)
Q Consensus 717 e~-~I~~~DavIilT 730 (745)
+. .-...|.+|...
T Consensus 81 ~~~~~g~id~li~~a 95 (253)
T PRK07904 81 AAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHhcCCCCEEEEee
Confidence 21 114688777543
No 447
>PLN02686 cinnamoyl-CoA reductase
Probab=64.64 E-value=19 Score=40.04 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=52.2
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC-CCcCCCCCceEEEEEcCcCCHhhHhcCC
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-LDISGLMNIKLVHREGNAVIRRHLESLP 719 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g-~~~~~L~~~~V~~i~GD~td~~~L~e~~ 719 (745)
..++|+|.|+ |-+|..+++.|.+ .|.+|.++..++ +..+.+.+.. .....-.+..+..+.||.+|.+.+.+.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~---~G~~V~~~~r~~--~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~- 125 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLR---HGYSVRIAVDTQ--EDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA- 125 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH-
Confidence 4568999998 7899999999975 488998765432 3322222100 000000011244688999999988765
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
++.+|.++-+.
T Consensus 126 i~~~d~V~hlA 136 (367)
T PLN02686 126 FDGCAGVFHTS 136 (367)
T ss_pred HHhccEEEecC
Confidence 66678877554
No 448
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=64.59 E-value=23 Score=40.98 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 641 ~~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
+-|++++|+|+|-+|..++..+.+. |++|+|++..
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L---G~~VTiie~~ 205 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL---GSKVTVVERG 205 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEecC
Confidence 5688999999999999999999886 9999999853
No 449
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=64.58 E-value=25 Score=37.91 Aligned_cols=41 Identities=29% Similarity=0.110 Sum_probs=33.6
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~ 429 (745)
++|.|+|.|..|..++..|...+ +.|.+.+++++..+.+..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~ 42 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG------HDVTLWARDPEQAAEINA 42 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHHH
Confidence 37999999999999999998653 678999998877766543
No 450
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.55 E-value=22 Score=40.53 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=30.8
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le 425 (745)
...++|+|+|..|..+++.+...+ ..|+++|.|+.+..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G------a~ViV~d~dp~r~~ 232 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG------ARVIVTEVDPIRAL 232 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc------CEEEEEeCChhhHH
Confidence 458999999999999999888643 57888998886543
No 451
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=64.54 E-value=26 Score=35.57 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=50.7
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~---- 718 (745)
++++|.|+ |.+|..+++.|.+ .|..|.++...+. +..+.+.+. . ......+..+.+|.+|.+.+++.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~---~g~~vi~~~r~~~-~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLN---DGYRVIATYFSGN-DCAKDWFEE-Y---GFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHH---cCCEEEEEeCCcH-HHHHHHHHH-h---hccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 57899886 6789999999975 4888988876532 222222210 0 01122355689999998876542
Q ss_pred --CCCCcceEEEec
Q 004558 719 --PLETFDSMSHWK 730 (745)
Q Consensus 719 --~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 75 ~~~~~~id~vi~~a 88 (245)
T PRK12824 75 EEEEGPVDILVNNA 88 (245)
T ss_pred HHHcCCCCEEEECC
Confidence 134578888766
No 452
>PLN02206 UDP-glucuronate decarboxylase
Probab=64.47 E-value=23 Score=40.66 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 642 ~~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
...||+|.|+ |-+|..+++.|.+ .|.+|.+++.... .+.+.+.. .+.+..+..+.||..+...
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~---~G~~V~~ld~~~~-~~~~~~~~------~~~~~~~~~i~~D~~~~~l------ 181 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMA---RGDSVIVVDNFFT-GRKENVMH------HFSNPNFELIRHDVVEPIL------ 181 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHH---CcCEEEEEeCCCc-cchhhhhh------hccCCceEEEECCccChhh------
Confidence 4468999998 8999999999976 4889998875321 22222211 1222334457899877643
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
..+|.||=+.
T Consensus 182 ~~~D~ViHlA 191 (442)
T PLN02206 182 LEVDQIYHLA 191 (442)
T ss_pred cCCCEEEEee
Confidence 3579998877
No 453
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=64.46 E-value=1.8e+02 Score=33.23 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.4
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~ 421 (745)
..+++|+|.|+.+..++++|.+... .+-.+|=++|.++
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~--~g~~vvG~idd~~ 162 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPD--LGYRVVGFVDDRP 162 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCcc--CCeEEEEEEeCCc
Confidence 4579999999999999999975432 1224444566554
No 454
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=64.44 E-value=22 Score=38.09 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=33.3
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG 691 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g 691 (745)
||.|+|.|.+|..++..|.+. |.+|++++. .++.+.+.+.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~---g~~V~~~~r---~~~~~~~~~~g 42 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA---GRDVTFLVR---PKRAKALRERG 42 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC---CCceEEEec---HHHHHHHHhCC
Confidence 699999999999999999863 889999985 35666666544
No 455
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=64.41 E-value=12 Score=38.22 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=34.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e 689 (745)
.-++++|.|.|++|..+++.|.+. |.+|++.+.+ .++++.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~--~~~~~~~~~ 69 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADIN--EEAVARAAE 69 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHH
Confidence 346899999999999999999864 8999988754 566666654
No 456
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=64.40 E-value=22 Score=41.26 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=44.0
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~~ 460 (745)
....++|+|+|..|..+++.|...+ ..|+++|.++........ .++.+. + +.++ ++.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G------a~ViV~e~dp~~a~~A~~--------~G~~~~-----~---leel-l~~ 309 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG------ARVVVTEIDPICALQAAM--------EGYQVV-----T---LEDV-VET 309 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchhHHHHHh--------cCceec-----c---HHHH-Hhc
Confidence 3468999999999999999998643 578889888765432211 112211 2 2222 458
Q ss_pred ccEEEEecC
Q 004558 461 ARAIIVLAS 469 (745)
Q Consensus 461 A~aVIiltd 469 (745)
||.||..+.
T Consensus 310 ADIVI~atG 318 (476)
T PTZ00075 310 ADIFVTATG 318 (476)
T ss_pred CCEEEECCC
Confidence 999998874
No 457
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=64.34 E-value=9.3 Score=42.48 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~ 680 (745)
.-+.++|||+|..|.=.++.|... |..|.+-|.+|-
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~---GA~ViVtEvDPI 243 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGM---GARVIVTEVDPI 243 (420)
T ss_pred cCceEEEecccccchHHHHHhhcC---CCeEEEEecCch
Confidence 457899999999999999999864 899999998874
No 458
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.23 E-value=25 Score=36.35 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.7
Q ss_pred CceEEEEccc-chHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gwg-~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.+.++|.|+. .+|..+++.|.+ .|.+|.+++....++..+.+.+ + +..+..+++|.+|.+.+++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~---~G~~vv~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAE---AGCDIVGINIVEPTETIEQVTA-------L-GRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEecCcchHHHHHHHHh-------c-CCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999985 689999999976 4889888865433333344432 1 22345688999998766542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-.+
T Consensus 79 ~~~~~~~~D~li~~A 93 (253)
T PRK08993 79 AVAEFGHIDILVNNA 93 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123578887655
No 459
>PRK12827 short chain dehydrogenase; Provisional
Probab=64.23 E-value=24 Score=35.86 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcC----ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER----DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~----d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
.++++|.|.+. .|..++++|...+ +.|+++++ +++..+...++.. ..+.++.++.+|..+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG------ADVIVLDIHPMRGRAEADAVAAGIE--AAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CeEEEEcCcccccHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHH
Confidence 35789999765 6889999998653 56666543 3334333332221 1134678899999999988765
Q ss_pred C------cccccEEEEecCC
Q 004558 457 S------VSKARAIIVLASD 470 (745)
Q Consensus 457 g------I~~A~aVIiltdd 470 (745)
- ....+.+|-.+..
T Consensus 78 ~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 2 1356888877643
No 460
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=64.17 E-value=18 Score=39.61 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=49.9
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCCC-
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE- 721 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~- 721 (745)
++|+|.|+ |-+|..+++.|.+ .|.+|.+++..+.. ........ ...+ .+.++.||.+|.+.+++. ++
T Consensus 5 k~ilItGatG~IG~~l~~~L~~---~G~~V~~~~r~~~~-~~~~~~~~-----~~~~-~~~~~~~Dl~~~~~~~~~-~~~ 73 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLE---LGAEVYGYSLDPPT-SPNLFELL-----NLAK-KIEDHFGDIRDAAKLRKA-IAE 73 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHH---CCCEEEEEeCCCcc-chhHHHHH-----hhcC-CceEEEccCCCHHHHHHH-Hhh
Confidence 68999998 7799999999976 48899988764321 11111100 0111 234578999999987763 22
Q ss_pred -CcceEEEec
Q 004558 722 -TFDSMSHWK 730 (745)
Q Consensus 722 -~~DavIilT 730 (745)
+.|.||-+.
T Consensus 74 ~~~d~vih~A 83 (349)
T TIGR02622 74 FKPEIVFHLA 83 (349)
T ss_pred cCCCEEEECC
Confidence 368888666
No 461
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=64.07 E-value=43 Score=36.74 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=49.0
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCc
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~--~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
...+|.|+|.|..|..++-.|...+ -...++|+|.+++.++....++.+ .+. .++.. .+ .+.++ +
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~----~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~i-~~--~~~~~-----~ 71 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQG----IADELVIIDINKEKAEGDAMDLSHAVPFT-SPTKI-YA--GDYSD-----C 71 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeEE-Ee--CCHHH-----h
Confidence 3469999999999999999887543 124689999877655444333321 111 12322 22 23344 4
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
.+||.||+.+..
T Consensus 72 ~~adivIitag~ 83 (315)
T PRK00066 72 KDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEecCC
Confidence 589999998876
No 462
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=64.06 E-value=12 Score=41.97 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=29.1
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..|+|+|+|..|..++-.|.+ .|.+|+|+|..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~---~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR---AGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh---CCCcEEEEccC
Confidence 479999999999999999986 49999999975
No 463
>PRK07041 short chain dehydrogenase; Provisional
Probab=64.03 E-value=19 Score=36.42 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=52.1
Q ss_pred EEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cccccc
Q 004558 386 LILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SVSKAR 462 (745)
Q Consensus 386 VI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA--gI~~A~ 462 (745)
+|.|.+. .|..++++|.+.+ ..|++++++++..+....... .+.++.++.+|.++++.++++ .+.+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG------ARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4667665 5889999998653 578888988776665443221 134577889999999998775 223457
Q ss_pred EEEEecCC
Q 004558 463 AIIVLASD 470 (745)
Q Consensus 463 aVIiltdd 470 (745)
.+|..+..
T Consensus 72 ~li~~ag~ 79 (230)
T PRK07041 72 HVVITAAD 79 (230)
T ss_pred EEEECCCC
Confidence 77776643
No 464
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.95 E-value=73 Score=35.73 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=28.8
Q ss_pred ccCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (745)
Q Consensus 381 ~k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d 420 (745)
...+|+|+|.|..|..+++.|...+- ..++++|.|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCC
Confidence 45689999999999999999988753 357778877
No 465
>PRK08251 short chain dehydrogenase; Provisional
Probab=63.72 E-value=25 Score=35.97 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=53.0
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-----
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES----- 717 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e----- 717 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+. + ....++..+..+.+|.+|.+.+++
T Consensus 3 k~vlItGas~giG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAA---KGRDLALCARRT--DRLEELKAE-L-LARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCH--HHHHHHHHH-H-HhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 57999997 5789999999975 478898887653 443333220 0 002234556678999999987653
Q ss_pred -CCCCCcceEEEec
Q 004558 718 -LPLETFDSMSHWK 730 (745)
Q Consensus 718 -~~I~~~DavIilT 730 (745)
...+..|.+|..+
T Consensus 76 ~~~~~~id~vi~~a 89 (248)
T PRK08251 76 RDELGGLDRVIVNA 89 (248)
T ss_pred HHHcCCCCEEEECC
Confidence 2245678888765
No 466
>PRK13243 glyoxylate reductase; Reviewed
Probab=63.70 E-value=14 Score=40.84 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~ 680 (745)
.-++|.|+|.|++|..+++.|..+ |.+|...+..+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF---GMRILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCEEEEECCCCC
Confidence 346899999999999999999865 889998886543
No 467
>PRK08226 short chain dehydrogenase; Provisional
Probab=63.64 E-value=26 Score=36.25 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=51.3
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+. .|..+++.|.+.+ ..|++++++.+. +...++.. ..+.++.++.+|.++++.++++-
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G------~~Vv~~~r~~~~-~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHG------ANLILLDISPEI-EKLADELC--GRGHRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEecCCHHH-HHHHHHHH--HhCCceEEEECCCCCHHHHHHHHHHH
Confidence 46788888765 6899999998653 578888887642 22222211 01345778899999998877641
Q ss_pred ---cccccEEEEecC
Q 004558 458 ---VSKARAIIVLAS 469 (745)
Q Consensus 458 ---I~~A~aVIiltd 469 (745)
...-|.+|-.+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (263)
T PRK08226 77 KEKEGRIDILVNNAG 91 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 124466666554
No 468
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=63.63 E-value=33 Score=38.24 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=51.5
Q ss_pred ccCeEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 004558 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (745)
Q Consensus 381 ~k~HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAgI~ 459 (745)
.+++|+|.|+ |-.|..+++.|...+ +.|+.+++..... .... ...+.++.||..+.+.+.++ +.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G------~~V~~v~r~~~~~---~~~~-----~~~~~~~~~Dl~d~~~~~~~-~~ 84 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG------HYIIASDWKKNEH---MSED-----MFCHEFHLVDLRVMENCLKV-TK 84 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC------CEEEEEEeccccc---cccc-----cccceEEECCCCCHHHHHHH-Hh
Confidence 5678999998 667999999998753 6788777643210 0100 11245788999999888775 34
Q ss_pred cccEEEEecC
Q 004558 460 KARAIIVLAS 469 (745)
Q Consensus 460 ~A~aVIiltd 469 (745)
++|.||=++.
T Consensus 85 ~~D~Vih~Aa 94 (370)
T PLN02695 85 GVDHVFNLAA 94 (370)
T ss_pred CCCEEEEccc
Confidence 6899888874
No 469
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=63.63 E-value=21 Score=38.88 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=51.6
Q ss_pred eEEEEcc-CccHHHHHHHHHHhcccCCCCeEEEEEcCChH-----HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 004558 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-----EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 384 HIVI~G~-g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e-----~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg 457 (745)
.++|.|+ |-.|..++++|...+ +.|++++++++ .++...+.. ....+.++.++.||.++.+.+.++=
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~ 74 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG------YEVHGLIRRSSSFNTQRIEHIYEDP-HNVNKARMKLHYGDLTDSSNLRRII 74 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC------CEEEEEecCCcccchhhhhhhhhcc-ccccccceeEEEeccCCHHHHHHHH
Confidence 6899997 457999999998754 56777776542 222211100 0001235789999999999887652
Q ss_pred cc-cccEEEEecCC
Q 004558 458 VS-KARAIIVLASD 470 (745)
Q Consensus 458 I~-~A~aVIiltdd 470 (745)
-. +.|.||=++..
T Consensus 75 ~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 75 DEIKPTEIYNLAAQ 88 (343)
T ss_pred HhCCCCEEEECCcc
Confidence 22 46888877754
No 470
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=63.58 E-value=23 Score=36.22 Aligned_cols=77 Identities=8% Similarity=0.012 Sum_probs=50.5
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhH-------
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHL------- 715 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L------- 715 (745)
++++|.|+ |-+|..+++.|.+ .|.+|.++...+ ++.+.+.+. +. . ....+..+.+|.+|.+.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~---~g~~v~~~~r~~--~~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAA---AGANVVVNDLGE--AGAEAAAKV-AT--D-AGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHH---CCCEEEEEeCCH--HHHHHHHHH-HH--h-cCCceEEEECCCCCHHHHHHHHHHH
Confidence 47999997 6889999999975 488999988653 444433320 00 0 112355688999999844
Q ss_pred hcCCCCCcceEEEec
Q 004558 716 ESLPLETFDSMSHWK 730 (745)
Q Consensus 716 ~e~~I~~~DavIilT 730 (745)
++. ....|.+|...
T Consensus 73 ~~~-~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAE-FGGLDILVNNA 86 (255)
T ss_pred HHh-cCCCCEEEECC
Confidence 322 45678887665
No 471
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.45 E-value=11 Score=41.17 Aligned_cols=40 Identities=23% Similarity=0.126 Sum_probs=33.0
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l 428 (745)
++|.|+|.|..|..++..|...+ +.|.+++++++.++.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g------~~V~l~~r~~~~~~~i~ 40 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK------ISVNLWGRNHTTFESIN 40 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC------CeEEEEecCHHHHHHHH
Confidence 36899999999999999998754 67889999887766553
No 472
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=63.44 E-value=13 Score=46.86 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=30.0
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~ 678 (745)
..++|+|+|+|.-|...|..|.+ .|.+|+|+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar---~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV---EGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---CCCeEEEEeeC
Confidence 35799999999999999999986 49999999964
No 473
>PRK12742 oxidoreductase; Provisional
Probab=63.42 E-value=23 Score=35.87 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=49.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--C
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 719 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~ 719 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.+.... .+++.+.+.+ .+ +. ..+.+|.+|.+.+.+. .
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~---~G~~v~~~~~~-~~~~~~~l~~------~~-~~--~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVT---DGANVRFTYAG-SKDAAERLAQ------ET-GA--TAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---CCCEEEEecCC-CHHHHHHHHH------Hh-CC--eEEecCCCCHHHHHHHHHH
Confidence 468999998 6899999999975 48888776432 3445555543 11 12 3467999998766542 1
Q ss_pred CCCcceEEEec
Q 004558 720 LETFDSMSHWK 730 (745)
Q Consensus 720 I~~~DavIilT 730 (745)
....|.+|..+
T Consensus 73 ~~~id~li~~a 83 (237)
T PRK12742 73 SGALDILVVNA 83 (237)
T ss_pred hCCCcEEEECC
Confidence 34578887665
No 474
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.32 E-value=21 Score=37.71 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred CceEEEEcc---cchHHHHHHHHHhhcCCCCeEEEEecCC-chHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc-
Q 004558 643 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVP-EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES- 717 (745)
Q Consensus 643 ~~rILI~Gw---g~~g~~l~~~L~~~~~~g~~v~IIe~~p-~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e- 717 (745)
.+.++|.|+ +.+|..+++.|.+ .|.+|.++.... ..++.+.+.+ ++... ..+.+|.+|++.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~---~G~~V~l~~r~~~~~~~~~~l~~------~~~~~--~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA---AGAELAFTYQGDALKKRVEPLAA------ELGAF--VAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH---CCCEEEEEcCchHHHHHHHHHHH------hcCCc--eEEecCCCCHHHHHHH
Confidence 368999998 4799999999976 489998875321 1345555544 23332 247899999887764
Q ss_pred -----CCCCCcceEEEec
Q 004558 718 -----LPLETFDSMSHWK 730 (745)
Q Consensus 718 -----~~I~~~DavIilT 730 (745)
+....-|.+|...
T Consensus 79 ~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHhcCCCcEEEECC
Confidence 2235678777554
No 475
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.32 E-value=22 Score=37.02 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=50.4
Q ss_pred CceEEEEccc---chHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhc--
Q 004558 643 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES-- 717 (745)
Q Consensus 643 ~~rILI~Gwg---~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e-- 717 (745)
.+.++|.|++ .+|..+++.|.+ .|.+|.+...+ ++..+.+.+ +....+..+..|.+|.+..++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~---~G~~Vi~~~r~--~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKD---QGATVIYTYQN--DRMKKSLQK-------LVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHH---CCCEEEEecCc--hHHHHHHHh-------hccCceeEEeCCCCCHHHHHHHH
Confidence 4689999985 799999999975 48999888643 222222322 212234568899999887654
Q ss_pred ----CCCCCcceEEEec
Q 004558 718 ----LPLETFDSMSHWK 730 (745)
Q Consensus 718 ----~~I~~~DavIilT 730 (745)
+.....|.+|...
T Consensus 75 ~~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 75 ATIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHHhCCCCEEEEcc
Confidence 1235678877544
No 476
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.24 E-value=27 Score=35.70 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=41.5
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rA 456 (745)
+.++|.|.+. .|..+++.|.+.+ ..|+++ .++++..+.+..+. +.++.++.+|.++++.++++
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G------~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREG------ARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC------CeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHH
Confidence 4688888664 6899999998654 455554 44455444443321 23577888999988877664
No 477
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=63.04 E-value=23 Score=36.67 Aligned_cols=77 Identities=8% Similarity=0.083 Sum_probs=52.0
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhc--
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLES-- 717 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e-- 717 (745)
.++++|.|+ +.+|..+++.|.+ .|.++.++... .++.+.+.+ .+. ...+..+..|.+|.+.+++
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~---~G~~vv~~~r~--~~~~~~~~~------~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFAT---AGASVVVSDIN--ADAANHVVD------EIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCC--HHHHHHHHH------HHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 478999998 4679999999976 48899888753 344433332 111 1234467899999987654
Q ss_pred ----CCCCCcceEEEec
Q 004558 718 ----LPLETFDSMSHWK 730 (745)
Q Consensus 718 ----~~I~~~DavIilT 730 (745)
+.....|.+|-.+
T Consensus 80 ~~~~~~~~~~d~li~~a 96 (255)
T PRK06113 80 DFALSKLGKVDILVNNA 96 (255)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 2235678888866
No 478
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=63.02 E-value=11 Score=41.04 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=48.7
Q ss_pred EEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCc----cEEEEEeCCCCHHHHhcc-Cc
Q 004558 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGT----SVICRSGSPLILADLKKV-SV 458 (745)
Q Consensus 385 IVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~----~V~~i~Gd~t~~e~L~rA-gI 458 (745)
|+|.|++. .|..++++|...+. ..+++.|+|+..+-.+..++...+.+. .+.++.||..|.+.|.++ .-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence 57787654 69999999997643 478999999887766655442111222 234568999999998887 32
Q ss_pred ccccEEEEecCC
Q 004558 459 SKARAIIVLASD 470 (745)
Q Consensus 459 ~~A~aVIiltdd 470 (745)
.+.|.|+=.+--
T Consensus 76 ~~pdiVfHaAA~ 87 (293)
T PF02719_consen 76 YKPDIVFHAAAL 87 (293)
T ss_dssp -T-SEEEE----
T ss_pred cCCCEEEEChhc
Confidence 367777766543
No 479
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=63.00 E-value=10 Score=41.13 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.9
Q ss_pred ceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 644 ~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
.+|.|+|.|..|..++..|.. .|.+|++++..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCH
Confidence 579999999999999999976 388999999753
No 480
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.98 E-value=18 Score=37.14 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=52.3
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCC--CCceEEEEEcCcCCHhhHhcC--
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL--MNIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L--~~~~V~~i~GD~td~~~L~e~-- 718 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++...+ ++.+.+.+ .+ ....+..+.+|.+|++.+++.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~---~g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK---EGAKVVIADLND--EAAAAAAE------ALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH---CCCeEEEEeCCH--HHHHHHHH------HHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 68999997 7899999999975 488999988653 33333322 11 122345688999999977542
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
..+..|.+|..+
T Consensus 74 ~~~~~~~~~d~vi~~a 89 (258)
T PRK12429 74 YAVETFGGVDILVNNA 89 (258)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124678888766
No 481
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=62.81 E-value=21 Score=37.59 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHH---------------------HHHhhcCCCCcCCCCCceEE
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKER---------------------EKKLTDGGLDISGLMNIKLV 703 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er---------------------~~~l~e~g~~~~~L~~~~V~ 703 (745)
||+|+|.|-.|..+++.|... .=-++++++.+.-++- ++.+.+ ..+++.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~--Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~------~np~v~i~ 72 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM--GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVND------RNPNCKVV 72 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHH------HCCCCEEE
Q ss_pred EEEcCcCCHhhHhcCCCCCcceEEEecCcc
Q 004558 704 HREGNAVIRRHLESLPLETFDSMSHWKTRL 733 (745)
Q Consensus 704 ~i~GD~td~~~L~e~~I~~~DavIilTd~~ 733 (745)
.++++..+++.+..+-++++|.||..+|..
T Consensus 73 ~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~ 102 (234)
T cd01484 73 PYQNKVGPEQDFNDTFFEQFHIIVNALDNI 102 (234)
T ss_pred EEeccCChhhhchHHHHhCCCEEEECCCCH
No 482
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=62.75 E-value=22 Score=37.83 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=34.5
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhc
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 689 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e 689 (745)
..++++|+|.|..|..++..|.+ .|.+|++++.. .++.+.+++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~---~g~~v~v~~R~--~~~~~~la~ 158 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLK---ADCNVIIANRT--VSKAEELAE 158 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH
Confidence 35689999999999999999975 37799999864 567666665
No 483
>PRK04148 hypothetical protein; Provisional
Probab=62.57 E-value=16 Score=35.12 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=41.2
Q ss_pred CceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhh
Q 004558 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRH 714 (745)
Q Consensus 643 ~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~ 714 (745)
.++++.+|-| .|..+++.|.+ .|.+|+.++.+| +..+...+.+ +..+.+|..+.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~--~aV~~a~~~~----------~~~v~dDlf~p~~ 72 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINE--KAVEKAKKLG----------LNAFVDDLFNPNL 72 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCH--HHHHHHHHhC----------CeEEECcCCCCCH
Confidence 4689999999 88889999986 489999999864 5566555421 2346788776553
No 484
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.49 E-value=13 Score=42.55 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=44.8
Q ss_pred eEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCCchHHHH----HhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcCCC
Q 004558 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREK----KLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (745)
Q Consensus 645 rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~----~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I 720 (745)
+|+|+|.|..|...++.|.+ .|.+|++.|..+.. +.+ .|.+. ++.+ ..|...+.+.++. .+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~---~G~~V~~~D~~~~~-~~~~~~~~l~~~--------gi~~--~~g~~~~~~~~~~-~~ 66 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA---QGWEVVVSDRNDSP-ELLERQQELEQE--------GITV--KLGKPLELESFQP-WL 66 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH---CCCEEEEECCCCch-hhHHHHHHHHHc--------CCEE--EECCccchhhhhH-Hh
Confidence 69999999999999888875 49999999975432 222 23331 2333 3455444332222 35
Q ss_pred CCcceEEEec
Q 004558 721 ETFDSMSHWK 730 (745)
Q Consensus 721 ~~~DavIilT 730 (745)
.++|.||+.+
T Consensus 67 ~~~d~vv~s~ 76 (459)
T PRK02705 67 DQPDLVVVSP 76 (459)
T ss_pred hcCCEEEECC
Confidence 6678777755
No 485
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=62.43 E-value=29 Score=36.00 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=47.7
Q ss_pred CeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 383 ~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e-~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
+.++|.|.+. .|..++++|.+.+ ..|++++++.. .....+++ .+.++.++.+|.++++..+++-
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G------~~vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAG------ADIVGVGVAEAPETQAQVEA-----LGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCchHHHHHHHHHH-----cCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 4678888766 5889999998754 56777776432 22222221 1346788889999988876641
Q ss_pred ---cccccEEEEec
Q 004558 458 ---VSKARAIIVLA 468 (745)
Q Consensus 458 ---I~~A~aVIilt 468 (745)
...-|.+|-.+
T Consensus 78 ~~~~g~iD~lv~~a 91 (251)
T PRK12481 78 VEVMGHIDILINNA 91 (251)
T ss_pred HHHcCCCCEEEECC
Confidence 12346666554
No 486
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.38 E-value=15 Score=44.23 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.7
Q ss_pred CCceEEEEcccchHHHHHHHHHhhcCCCCeEEEEecCC
Q 004558 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (745)
Q Consensus 642 ~~~rILI~Gwg~~g~~l~~~L~~~~~~g~~v~IIe~~p 679 (745)
..++|+|+|+|..|...+..|... |.+|+|++..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~---G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA---GVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc---CCcEEEEeCCC
Confidence 468999999999999999999864 88999999764
No 487
>PLN02240 UDP-glucose 4-epimerase
Probab=62.36 E-value=23 Score=38.58 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEec--CCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNE--VPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~--~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e~ 718 (745)
++|+|.|+ |-+|..+++.|.+. |.+|++++. .+..+..+.+.+ ... ...+..+.||.+|.+.++++
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~---g~~V~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~l~~~ 76 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLA---GYKVVVIDNLDNSSEEALRRVKE------LAGDLGDNLVFHKVDLRDKEALEKV 76 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCCcchHHHHHHHHH------hhcccCccceEEecCcCCHHHHHHH
Q ss_pred CCC--CcceEEEec
Q 004558 719 PLE--TFDSMSHWK 730 (745)
Q Consensus 719 ~I~--~~DavIilT 730 (745)
++ ..|.||-++
T Consensus 77 -~~~~~~d~vih~a 89 (352)
T PLN02240 77 -FASTRFDAVIHFA 89 (352)
T ss_pred -HHhCCCCEEEEcc
No 488
>PLN02823 spermine synthase
Probab=62.36 E-value=28 Score=38.60 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=50.0
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc---ccCCccEEEEEeCCCCHHHHhccCc
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---DFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~---~~~~~~V~~i~Gd~t~~e~L~rAgI 458 (745)
..+++|+|.|. ..+++++.... ....|+++|.|++.++...+.+.. .+.+.++.++.||+.+ -|++. -
T Consensus 104 pk~VLiiGgG~--G~~~re~l~~~----~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~L~~~-~ 174 (336)
T PLN02823 104 PKTVFIMGGGE--GSTAREVLRHK----TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--ELEKR-D 174 (336)
T ss_pred CCEEEEECCCc--hHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--HHhhC-C
Confidence 45899999995 34566665432 125689999999877765432211 1234578888888764 34433 3
Q ss_pred ccccEEEEecC
Q 004558 459 SKARAIIVLAS 469 (745)
Q Consensus 459 ~~A~aVIiltd 469 (745)
++.|.||+-..
T Consensus 175 ~~yDvIi~D~~ 185 (336)
T PLN02823 175 EKFDVIIGDLA 185 (336)
T ss_pred CCccEEEecCC
Confidence 56788887653
No 489
>PRK07201 short chain dehydrogenase; Provisional
Probab=62.30 E-value=22 Score=42.43 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=57.1
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|++. .|..++++|...+ ..|++++++++..++..++... .+.++.++.+|.++.+.++++-
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~ 442 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAG------ATVFLVARNGEALDELVAEIRA--KGGTAHAYTCDLTDSAAVDHTVKDI 442 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788999865 6899999998653 6788888888776665443211 1346888999999999887642
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 443 ~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 443 LAEHGHVDYLVNNAGR 458 (657)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1256788877653
No 490
>PRK08643 acetoin reductase; Validated
Probab=62.27 E-value=20 Score=37.06 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC--
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL-- 718 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e~-- 718 (745)
+.++|.|+ |.+|..+++.|.+ .|.+|.+++.. .++.+.+.. .+. ...+..+.+|.+|++.+++.
T Consensus 3 k~~lItGas~giG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVE---DGFKVAIVDYN--EETAQAAAD------KLSKDGGKAIAVKADVSDRDQVFAAVR 71 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCC--HHHHHHHHH------HHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 57899998 4689999999976 48899998864 334333322 111 12344688999999866541
Q ss_pred ----CCCCcceEEEec
Q 004558 719 ----PLETFDSMSHWK 730 (745)
Q Consensus 719 ----~I~~~DavIilT 730 (745)
.....|.+|..+
T Consensus 72 ~~~~~~~~id~vi~~a 87 (256)
T PRK08643 72 QVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHcCCCCEEEECC
Confidence 134578888766
No 491
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.27 E-value=25 Score=36.32 Aligned_cols=76 Identities=8% Similarity=0.013 Sum_probs=52.9
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.+|.+++.+ .++.+.+.+ .+.. .+..+.+|.+|.+.+++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~-~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLA---EGARVVIADIK--PARARLAAL------EIGP-AAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH---cCCEEEEEcCC--HHHHHHHHH------HhCC-ceEEEEccCCCHHHHHHHHHH
Confidence 368999998 6789999999976 48999998864 455555443 2221 244578999999887542
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-.+
T Consensus 74 ~~~~~~~id~li~~a 88 (257)
T PRK07067 74 AVERFGGIDILFNNA 88 (257)
T ss_pred HHHHcCCCCEEEECC
Confidence 124578888765
No 492
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.17 E-value=12 Score=40.95 Aligned_cols=41 Identities=22% Similarity=0.012 Sum_probs=34.0
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l 428 (745)
.++|.|+|.|..|..++..|...+ +.|.+.+++++..+.+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G------~~V~~~~r~~~~~~~i~ 44 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG------VPVRLWARRPEFAAALA 44 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHH
Confidence 357999999999999999998654 68999999887766554
No 493
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=62.08 E-value=28 Score=39.65 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=34.1
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~ 427 (745)
++|-|+|.|..|..++..|...+ +.|+..|.+++.++.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G------~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ------KQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC------CEEEEEeCCHHHHHHH
Confidence 57999999999999999998754 7899999999888764
No 494
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=62.05 E-value=29 Score=39.31 Aligned_cols=40 Identities=20% Similarity=0.010 Sum_probs=33.6
Q ss_pred CeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (745)
Q Consensus 383 ~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l 428 (745)
++|-|+|.|-+|....--|.+.+ |.|+.+|.|+++++.+-
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G------HeVv~vDid~~KV~~ln 40 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG------HEVVCVDIDESKVELLN 40 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC------CeEEEEeCCHHHHHHHh
Confidence 47889999999988888887643 89999999999988764
No 495
>PRK06841 short chain dehydrogenase; Provisional
Probab=62.00 E-value=30 Score=35.59 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=51.6
Q ss_pred cCeEEEEccC-ccHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 004558 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (745)
Q Consensus 382 k~HIVI~G~g-~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg--- 457 (745)
.++++|.|.+ ..|..++++|...+ ..|++++++++.. ....+. .+.++.++..|.++++.++++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G------~~Vi~~~r~~~~~-~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKG------ARVALLDRSEDVA-EVAAQL----LGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHH-HHHHHh----hCCceEEEEecCCCHHHHHHHHHHH
Confidence 3578889974 46999999998643 5788888876532 222221 1334668889999998876641
Q ss_pred ---cccccEEEEecCC
Q 004558 458 ---VSKARAIIVLASD 470 (745)
Q Consensus 458 ---I~~A~aVIiltdd 470 (745)
....|.+|-.+..
T Consensus 84 ~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1246777776643
No 496
>PRK06953 short chain dehydrogenase; Provisional
Probab=61.98 E-value=35 Score=34.50 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=50.4
Q ss_pred ceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC--CC
Q 004558 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 720 (745)
Q Consensus 644 ~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--~I 720 (745)
++++|.|+ |.+|..+++.|.+ .|.+|.++... .+..+.+.+. + +..+.+|.+|.+.+++. .+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~---~G~~v~~~~r~--~~~~~~~~~~--------~--~~~~~~D~~~~~~v~~~~~~~ 66 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRA---DGWRVIATARD--AAALAALQAL--------G--AEALALDVADPASVAGLAWKL 66 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHh---CCCEEEEEECC--HHHHHHHHhc--------c--ceEEEecCCCHHHHHHHHHHh
Confidence 46888886 6789999999965 58999998864 3444444331 2 23478999999888762 12
Q ss_pred --CCcceEEEec
Q 004558 721 --ETFDSMSHWK 730 (745)
Q Consensus 721 --~~~DavIilT 730 (745)
+..|.+|...
T Consensus 67 ~~~~~d~vi~~a 78 (222)
T PRK06953 67 DGEALDAAVYVA 78 (222)
T ss_pred cCCCCCEEEECC
Confidence 3578888765
No 497
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=61.94 E-value=34 Score=35.04 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=50.8
Q ss_pred cCeEEEEccCc-cHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 004558 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (745)
Q Consensus 382 k~HIVI~G~g~-~g~~L~~eL~~~~~s~~~~~iVVLi-D~d~e~le~~l~~~~~~~~~~~V~~i~Gd~t~~e~L~rAg-- 457 (745)
.+.++|.|.+. .|..+++.|.+.+ ..|+++ .++++..+...++... .+.++.++.+|.++.+.++++-
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG------WSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHH
Confidence 35789999865 6889999998653 445544 4555544443332211 1346788999999988765531
Q ss_pred ----cccccEEEEecC
Q 004558 458 ----VSKARAIIVLAS 469 (745)
Q Consensus 458 ----I~~A~aVIiltd 469 (745)
....|.+|.++.
T Consensus 74 ~~~~~~~id~li~~ag 89 (248)
T PRK06947 74 VQSAFGRLDALVNNAG 89 (248)
T ss_pred HHHhcCCCCEEEECCc
Confidence 235678887664
No 498
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.94 E-value=23 Score=36.15 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=52.6
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCC--CceEEEEEcCcCCHhhHhcC-
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM--NIKLVHREGNAVIRRHLESL- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~--~~~V~~i~GD~td~~~L~e~- 718 (745)
.++++|.|+ |.+|..+++.|.+ .|.++.++... +++.+.+.+ .+. +..+..+.+|.+|++.+++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAE---AGATVAFNDGL--AAEARELAA------ALEAAGGRAHAIAADLADPASVQRFF 75 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHH------HHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 468999997 7899999999976 48899888754 344443332 111 12345588999999877542
Q ss_pred -----CCCCcceEEEec
Q 004558 719 -----PLETFDSMSHWK 730 (745)
Q Consensus 719 -----~I~~~DavIilT 730 (745)
.....|.+|-..
T Consensus 76 ~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 76 DAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124678888776
No 499
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=61.92 E-value=2.1e+02 Score=32.77 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=27.4
Q ss_pred cCeEEEEccCccHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (745)
Q Consensus 382 k~HIVI~G~g~~g~~L~~eL~~~~~s~~~~~iVVLiD~d~e 422 (745)
..+++|+|.|+.+..+++.|...+.. +-.+|=++|.|++
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~--g~~vvG~idd~~~ 166 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPEL--GYRVVGFFDDRPD 166 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccC--CcEEEEEEeCCCc
Confidence 46899999999999999999754321 1245556666553
No 500
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.85 E-value=22 Score=36.78 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=50.7
Q ss_pred CceEEEEcc-cchHHHHHHHHHhhcCCCCeEEEEecCCchHHHHHhhcCCCCcCCCCCceEEEEEcCcCCHhhHhcC---
Q 004558 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (745)
Q Consensus 643 ~~rILI~Gw-g~~g~~l~~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~--- 718 (745)
.++|+|.|+ |.+|..+++.|.+ .|.+|.++... +++.+.+.+ .+.. ..+.+|.+|++.+++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~---~G~~v~~~~r~--~~~~~~~~~------~~~~---~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAA---EGATVVVGDID--PEAGKAAAD------EVGG---LFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---cCCEEEEEeCC--HHHHHHHHH------HcCC---cEEEeeCCCHHHHHHHHHH
Confidence 468999999 7899999999976 48999998864 333443332 1222 2467899998876541
Q ss_pred ---CCCCcceEEEec
Q 004558 719 ---PLETFDSMSHWK 730 (745)
Q Consensus 719 ---~I~~~DavIilT 730 (745)
.....|.+|-.+
T Consensus 73 ~~~~~~~id~vi~~a 87 (255)
T PRK06057 73 AAETYGSVDIAFNNA 87 (255)
T ss_pred HHHHcCCCCEEEECC
Confidence 124578887766
Done!