Query 004558
Match_columns 745
No_of_seqs 342 out of 2740
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 17:44:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004558.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1863-1867//hhsearch_pdb/004558hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gx0_A TRKA domain protein; me 1.0 1 1 433.8 27.9 398 283-741 15-429 (565)
2 4g65_A TRK system potassium up 1.0 1 1 351.2 19.6 306 382-741 3-321 (461)
3 1lnq_A MTHK channels, potassiu 1.0 1 1 335.7 13.3 299 293-621 25-330 (336)
4 3naf_A Calcium-activated potas 1.0 1 1 305.9 27.9 371 343-732 15-491 (798)
5 3mt5_A Potassium large conduct 1.0 1 1 266.9 24.1 334 381-731 2-466 (726)
6 4hpf_A Potassium channel subfa 1.0 1 1 257.9 18.9 334 381-730 2-473 (722)
7 4gx0_A TRKA domain protein; me 1.0 1 1 208.6 10.8 209 382-624 348-557 (565)
8 2aef_A Calcium-gated potassium 1.0 1 1 202.0 18.6 219 374-621 1-224 (234)
9 3l4b_C TRKA K+ channel protien 1.0 1 1 189.1 12.9 208 383-621 1-211 (218)
10 4g65_A TRK system potassium up 1.0 1 1 188.9 14.8 210 381-620 234-449 (461)
No 1
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=433.83 Aligned_cols=398 Identities=15% Similarity=0.158 Sum_probs=318.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----CCC--CCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 60689999999999999997642020----137--9988999999876424788887-6895580114478786799999
Q 004558 283 YPYAKLLALLFATIFLIIFGGLALYA----VSD--SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFA 355 (745)
Q Consensus 283 ~~~~~~l~ll~~~l~lil~g~~~l~~----~e~--~s~~dAly~t~~TiTTvGygd~-~~t~~gRi~av~lil~Gi~ifa 355 (745)
..++.++.++++.++++++++++|++ +|+ ++|+|||||+++|+||+||||. |.+..||+|+++++++|+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~ 94 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLD 94 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 66999999999999999999999999997635888765523222346664106877677982189999999999999999
Q ss_pred HHHHH-HHHHHHHH-HHH----HCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99999-99999998-863----2048642000472999923762899999999811159998079999699378999998
Q 004558 356 MMLGL-VSDAISEK-VDS----LRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (745)
Q Consensus 356 ~lig~-i~~~i~~~-l~~----lr~G~~~v~~k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~ 429 (745)
+.++. +++.+.+. +++ .+.++.....++|+||||||+.|..++++|...+ +.|+++|.|++.++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~g~~g~~la~~L~~~~------~~vvvid~~~~~~~~~~~ 168 (565)
T 4gx0_A 95 IILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFGIDPITRTLIRKLESRN------HLFVVVTDNYDQALHLEE 168 (565)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESCCHHHHHHHHHTTTTT------CCEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH
T ss_conf 99889999999999999998750412354445872999888868999999999779------989999799999999998
Q ss_pred HHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
Q ss_conf 21002489628999967999888852685564389994489987711499999999995312898751999956999988
Q 004558 430 KLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (745)
Q Consensus 430 ~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~A~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~ 509 (745)
+ .++.++.||++++++|++|++++|+++|+ +. +|+.|+.+|+++|+++ . .+++|++.++++.+
T Consensus 169 ~-------~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~------~D~~n~~~~~~ar~~~-~--~~iiar~~~~~~~~ 231 (565)
T 4gx0_A 169 Q-------EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL------SDPDNANLCLTVRSLC-Q--TPIIAVVKEPVHGE 231 (565)
T ss_dssp S-------CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS------CHHHHHHHHHHHHTTC-C--CCEEEECSSGGGHH
T ss_pred H-------CCCEEEEECCCCHHHHHHCCCCCCCEEEE-EC------CCHHHHHHHHHHHHHC-C--CEEEEEECCHHHHH
T ss_conf 2-------39869996899989998569562799999-18------9677899999999866-9--64999978887899
Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH-HHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEE
Q ss_conf 898749983668704899999999997088579-9999983378860442149965788687673109-99199999994
Q 004558 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLA-QIWEDILGFENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVA 587 (745)
Q Consensus 510 ~lk~~Gad~Ve~I~s~el~a~lLaq~~~~Pg~~-~Vl~~Ll~~~g~ei~i~~~s~lvG~tl~El~~~~-~~~ivIGI~r~ 587 (745)
.++.+|+|.| +++.+..++.+++.+..|+.. ++++..-...-.|+.+. .++++|++++|+..+. .++.++||+|
T Consensus 232 ~l~~~Gad~v--i~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l~el~~~~~~~~~vi~i~r- 307 (565)
T 4gx0_A 232 LLRLAGANQV--VPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTIGESGIRQRTGLSIIGVWE- 307 (565)
T ss_dssp HHHHHTCSEE--ECHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred HHHHCCCCEE--ECHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEEEC-CCCCCCCCHHHCCCCHHCCCEEEEEEE-
T ss_conf 9997699889--976999999999985166321101103678569999988-985589898994842105979999998-
Q ss_pred ECCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 22991884899994252897999999289977889996002102345699999999519999255049999999986449
Q 004558 588 AEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLA 667 (745)
Q Consensus 588 ~~~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rILIvG~g~~g~~la~~L~~~~~ 667 (745)
+|+.. +|.++++|++||.++++|+.+++.++..... ...+. ++++|||||+.|..+++.|.+.
T Consensus 308 --~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~-----------~~~~~-~~viIiG~G~~G~~la~~L~~~-- 370 (565)
T 4gx0_A 308 --RGSLT-TPQRETVLTEQSLLVLAGTKSQLAALEYLIG-----------EAPED-ELIFIIGHGRIGCAAAAFLDRK-- 370 (565)
T ss_dssp -----------------------------------------------------CC-CCEEEECCSHHHHHHHHHHHHT--
T ss_pred --CCEEE-CCCCCCEECCCCEEEEEECHHHHHHHHHHHC-----------CCCCC-CCEEEECCCHHHHHHHHHHHHC--
T ss_conf --99884-7999868679999999968999999999835-----------78889-9889989887899999999987--
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEEC--CCCHHHHHHCC
Q ss_conf 998699990698168889852388885788883399998574798567219999854699955--75004555148
Q 004558 668 PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVLL 741 (745)
Q Consensus 668 ~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDavIilt--d~~ni~~~~~~ 741 (745)
|.++++|+.++ ++++. +. .+++||++|++.|+++|+++||++|+++ |+.|++++++.
T Consensus 371 -g~~v~vid~d~--~~~~~----------~~----~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~a 429 (565)
T 4gx0_A 371 -PVPFILIDRQE--SPVCN----------DH----VVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLAC 429 (565)
T ss_dssp -TCCEEEEESSC--CSSCC----------SS----CEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHH
T ss_pred -CCCEEEEECCH--HHHHH----------CC----CEEEECCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf -99789997886--89862----------68----78990789989998649241399999779826799999999
No 2
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=351.18 Aligned_cols=306 Identities=14% Similarity=0.159 Sum_probs=257.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 47299992376289999999981115999807999969937899999821002489628999967999888852685564
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~A 461 (745)
.+||||||+|++|..++++|... ++.|+++|.|++.++.+.++ .++.++.||++++++|++||+++|
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGE------NNDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCST------TEEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHH-------CCCEEEEECCCCHHHHHHCCCCCC
T ss_conf 68799999889999999999978------99799998999999999973-------694799970799999985698749
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 389994489987711499999999995312898751999956999988898------74998366870489999999999
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIGRLMIQC 535 (745)
Q Consensus 462 ~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk------~~Gad~Ve~I~s~el~a~lLaq~ 535 (745)
+.+|++|++ |+.|+.+|+.+|++++. .++|+|++++++....+ .+|+|.+ |+|+.++++.+.+.
T Consensus 70 d~~ia~t~~------De~Nl~~~~~Ak~~~~~--~~~iar~~~~~~~~~~~~l~~~~~~giD~i--IsPe~~~a~~I~~~ 139 (461)
T 4g65_A 70 DMLVAVTNT------DETNMAACQVAFTLFNT--PNRIARIRSPQYLAQKEALFKSGAIPVDHL--IAPEELVTSYIERL 139 (461)
T ss_dssp SEEEECCSC------HHHHHHHHHHHHHHHCC--SSEEEECCCHHHHTTHHHHTTTSSSCCSEE--ECHHHHHHHHHHHH
T ss_pred CEEEEECCC------HHHHHHHHHHHHHHCCC--CCCEEEECCCHHHHHHHHHHHCCCCCCCEE--ECHHHHHHHHHHHH
T ss_conf 999997498------48999999999986687--642148526024455666543035785446--45899999999986
Q ss_pred HCCCCHHHHHHHHHCCCC---CCEEECCCCCCCCCCHHHHHHHCC--CEEEEEEEEEECCCEEEECCCCCCEECCCCEEE
Q ss_conf 708857999999833788---604421499657886876731099--919999999422991884899994252897999
Q 004558 536 ALQPGLAQIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVISFP--DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVL 610 (745)
Q Consensus 536 ~~~Pg~~~Vl~~Ll~~~g---~ei~i~~~s~lvG~tl~El~~~~~--~~ivIGI~r~~~~g~v~lnP~~dtvL~~GD~Li 610 (745)
+..|++.++++ +..+. .++.+.+.++++|++++|+...++ ++.++||+| +|+ .+.|.++++|++||.++
T Consensus 140 i~~p~~~~~~~--f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R---~g~-~iiP~g~t~i~~gD~v~ 213 (461)
T 4g65_A 140 IQYPGALQVVS--FAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFR---QGR-PIRPQGTTIIEADDEVF 213 (461)
T ss_dssp HTSTTCSEEEE--ETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEE---TTE-EECCCTTCBCCTTCEEE
T ss_pred CCCCCEEEEEE--ECCCEEEEEEEEECCCCEECCCCHHHHHHHCCCCCEEEEEEEE---CCE-ECCCCCCCEECCCCEEE
T ss_conf 56887088888--2466489999996589736477289888547987549999997---884-50699772524798999
Q ss_pred EEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 99928997788999600210234569999999951999925504999999998644999869999069816888985238
Q 004558 611 VIAEDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 690 (745)
Q Consensus 611 VIa~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rILIvG~g~~g~~la~~L~~~~~~g~~v~IIe~~p~~er~~~l~e~ 690 (745)
+++..+++.++... .+...+..++|+|+|+|++|..+++.|++ +..+++||.+ ++||+.+++
T Consensus 214 ~i~~~~~i~~~~~~-----------~g~~~~~~~~v~I~GgG~ig~~lA~~L~~----~~~v~iIE~d--~~r~~~la~- 275 (461)
T 4g65_A 214 FVAASNHIRSVMSE-----------LQRLEKPYRRIMIVGGGNIGASLAKRLEQ----TYSVKLIERN--LQRAEKLSE- 275 (461)
T ss_dssp EEEETTTHHHHHHH-----------TTGGGSCCCEEEEECCSHHHHHHHHHHTT----TSEEEEEESC--HHHHHHHHH-
T ss_pred EEECCCHHHHHHHH-----------HCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCEEEEECC--HHHHHHHHH-
T ss_conf 98323057778876-----------44566555279998113899999997522----4726998268--899999998-
Q ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEEC--CCCHHHHHHCC
Q ss_conf 8885788883399998574798567219999854699955--75004555148
Q 004558 691 GLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHWK--TRLCILTHVLL 741 (745)
Q Consensus 691 g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDavIilt--d~~ni~~~~~~ 741 (745)
+|++..| ++||++|+++|+|+||+++|++|++| ||.||+++++.
T Consensus 276 -----~l~~~~V--i~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llA 321 (461)
T 4g65_A 276 -----ELENTIV--FCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLA 321 (461)
T ss_dssp -----HCTTSEE--EESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHH
T ss_pred -----HCCCCEE--EECCCCCHHHHHHCCCHHHCEEEECCCCCHHHHHHHHHH
T ss_conf -----7898648--834545455576618222347998456817899999999
No 3
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=1.00 E-value=1 Score=335.73 Aligned_cols=299 Identities=22% Similarity=0.343 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 99999999976420201379988999999876424788887-68955801144787867999999999999999998-86
Q 004558 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK-VD 370 (745)
Q Consensus 293 ~~~l~lil~g~~~l~~~e~~s~~dAly~t~~TiTTvGygd~-~~t~~gRi~av~lil~Gi~ifa~lig~i~~~i~~~-l~ 370 (745)
++.++++++|+++|+++|+++|+||+||+++|+||+||||. |.+..+|+++++++++|++++++.++.+++.+.++ ++
T Consensus 25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988289899999999988542248898779807799999999999999999999999999989999
Q ss_pred HHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 32048642000472999923762899999999811159998079999699378999998210024896289999679998
Q 004558 371 SLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLIL 450 (745)
Q Consensus 371 ~lr~G~~~v~~k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~ 450 (745)
+. .++.+...++|++|||||+.|..++++|.+. ++ |+++|.|++.++ +.+ .++.++.||++++
T Consensus 105 ~~-~~~~~~~~~~~viI~G~G~~g~~l~~~L~~~------g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~ 167 (336)
T 1lnq_A 105 KL-MGLIDVAKSRHVVICGWSESTLECLRELRGS------EV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRV 167 (336)
T ss_dssp ------------CEEEEESCCHHHHHHHTTGGGS------CE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSH
T ss_pred HH-HHHHHHCCCCCEEEECCCHHHHHHHHHHHHC------CC-EEEEECCHHHHH-HHH--------CCCEEEEECCCCH
T ss_conf 98-7454430468789977867999999999758------95-899958855514-776--------8947998289998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 88852685564389994489987711499999999995312898751999956999988898749983668704899999
Q 004558 451 ADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGR 530 (745)
Q Consensus 451 e~L~rAgI~~A~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~I~s~el~a~ 530 (745)
++|+++++++|+++++++++ |+.|+.+++.+|+++|+ .++++++.++++.+.++.+|+|.+ +.+.+..+.
T Consensus 168 ~~L~~a~i~~a~~vi~~~~~------d~~n~~~~~~ar~~~~~--~~iiar~~~~~~~~~l~~~G~d~v--i~~~~~~~~ 237 (336)
T 1lnq_A 168 SDLEKANVRGARAVIVDLES------DSETIHCILGIRKIDES--VRIIAEAERYENIEQLRMAGADQV--ISPFVISGR 237 (336)
T ss_dssp HHHHHTCSTTEEEEEECCSS------HHHHHHHHHHHHTTCTT--SEEEEECSSGGGHHHHHHTTCSEE--ECHHHHHHH
T ss_pred HHHHHCCHHHCCEEEECCCC------CHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECHHHHHHH
T ss_conf 99985594552599996876------18899999999987899--869999889778999997697999--995676999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC-C---CCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECC
Q ss_conf 9999970885799999983378-8---60442149965788687673109-99199999994229918848999942528
Q 004558 531 LMIQCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKE 605 (745)
Q Consensus 531 lLaq~~~~Pg~~~Vl~~Ll~~~-g---~ei~i~~~s~lvG~tl~El~~~~-~~~ivIGI~r~~~~g~v~lnP~~dtvL~~ 605 (745)
.+++.+..|++.+++++++... + .++.+.+.++++|++++|+..+. .++.++|+.| +|+..++|+++++|++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~~~~ii~i~r---~~~~~~~P~~~~~l~~ 314 (336)
T 1lnq_A 238 LMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRA 314 (336)
T ss_dssp HHHHTSSCSHHHHHHHHHTSSCSSCEEEEEECCSSCSSTTCBHHHHCHHHHHCCEEEEEEC---SSCEESSCCTTCBCCS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEEE---CCEEEECCCCCCEECC
T ss_conf 9999983803799999997076774699999689997598898981516016949999998---9977879299818869
Q ss_pred CCEEEEEEECCCCCCC
Q ss_conf 9799999928997788
Q 004558 606 GDEVLVIAEDDDTYAP 621 (745)
Q Consensus 606 GD~LiVIa~~~~~~~~ 621 (745)
||.++++|+.++..++
T Consensus 315 gD~liv~g~~~~~~~~ 330 (336)
T 1lnq_A 315 GDIILGIGKPEEIERL 330 (336)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCEEEEEECHHHHHHH
T ss_conf 9999999879999999
No 4
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=305.92 Aligned_cols=371 Identities=17% Similarity=0.232 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 447878679999999999999999988632048642-000472999923762--89999999981115999807999969
Q 004558 343 SVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSE-VIEKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAER 419 (745)
Q Consensus 343 av~lil~Gi~ifa~lig~i~~~i~~~l~~lr~G~~~-v~~k~HIIIiG~g~~--g~~Li~eL~~~~e~~~~~~iVVLiD~ 419 (745)
-+..|++|+++|++++|.+++.+.++.. ..|+.+ +..++|||||||++. ...++++|..+++...+..+|++.+.
T Consensus 15 ~~~~IlgGI~lFa~~ig~liel~~~r~~--~~G~y~~~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~ 92 (798)
T 3naf_A 15 KLEEILSKLYHIENELARIKKLLGERKK--YGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNI 92 (798)
T ss_dssp ---------------------------C--CCSSCCCCCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred HHEEHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 3513468999999999999999998886--47751223688729999279788999999999751222468868999589
Q ss_pred CH-HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 93-7899999821002489628999967999888852685564389994489--98771149999999999531289875
Q 004558 420 DK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRG 496 (745)
Q Consensus 420 d~-e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~A~aIIiltdd--~~~~~sD~~NI~~~Lsak~l~p~~~~ 496 (745)
++ .+++..+..+ ..++.|++||++++++|+||++++|+++|++++. .++.++|+.|+.++|++|+++|+ .
T Consensus 93 ~p~~eLe~lL~~~-----~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~--i 165 (798)
T 3naf_A 93 SPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--I 165 (798)
T ss_dssp CCCHHHHHHHHHT-----TTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTT--C
T ss_pred CCCHHHHHHHHCC-----CCCEEEEECCCCCHHHHHHCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--C
T ss_conf 9758899876433-----68549999078998999735970388999987855667762459999999999977899--8
Q ss_pred EEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCC------------------
Q ss_conf 19999569999888987------499836687048999999999970885799999983378------------------
Q 004558 497 HVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE------------------ 552 (745)
Q Consensus 497 ~IIArv~d~e~~~~lk~------~Gad~Ve~I~s~el~a~lLaq~~~~Pg~~~Vl~~Ll~~~------------------ 552 (745)
+|||++.++++..+++. +|+|.| |++.++.+++|++++.+||+..++.++++..
T Consensus 166 ~IIa~~~~~en~~~L~~~~sw~~AGAd~V--I~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~ 243 (798)
T 3naf_A 166 RIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGV 243 (798)
T ss_dssp CEEEEESCTTGGGSGGGCTTCCTTTTCEE--EEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHCCCCHHCCCCEE--EEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 79999889767999873643011489889--9448999999999863997799999996035655443167899874346
Q ss_pred CCCEEECCC-CCCCCCCHHHHHHH---CCCEEEEEEEEEEC--CCEEEECCCCCCEECCCCEEEEEEECCCCCCCC----
Q ss_conf 860442149-96578868767310---99919999999422--991884899994252897999999289977889----
Q 004558 553 NAEFYIKRW-PQLDDLRFEEVVIS---FPDAIPCGIKVAAE--GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG---- 622 (745)
Q Consensus 553 g~ei~i~~~-s~lvG~tl~El~~~---~~~~ivIGI~r~~~--~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~~~~---- 622 (745)
+.++|.... +.++|++|+|+... ..+++++||.+... +|++.+||+++++|++||.+++||++++..+-.
T Consensus 244 g~Eiy~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~LivIa~~~~~vk~a~~yc 323 (798)
T 3naf_A 244 SNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYC 323 (798)
T ss_dssp TBCCEEEECCGGGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCTTCBCCTTCEEEECCBTTTGGGGGGSCS
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHHH
T ss_conf 86799985781138979999999988738779999983467889808989999878799998999968789999999999
Q ss_pred -CC------CCHHH------------------------------------CCCCC----CC-----CC-----CCCCCCE
Q ss_conf -99------60021------------------------------------02345----69-----99-----9999951
Q 004558 623 -PL------PEVVC------------------------------------KRSFL----KI-----PD-----PPKYPEK 645 (745)
Q Consensus 623 -~~------~~~i~------------------------------------~~~~~----~~-----~~-----~~~~~~r 645 (745)
.+ ++.+. .+++- .. .. ...-..+
T Consensus 324 ~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nH 403 (798)
T 3naf_A 324 KACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGH 403 (798)
T ss_dssp SCCCCCGGGGGGSCCSCCCCCCCCCCCC-----------------CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHCCCCC
T ss_conf 86233211111111111236730124674335663112312332233202565100688756674200456665326888
Q ss_pred EEEECCCC------HHHHHHHHHHHH-CC--CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 99992550------499999999864-49--9986999906981688898523888857888833999985747985672
Q 004558 646 ILFCGWRR------DIDDMIMVLEAF-LA--PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (745)
Q Consensus 646 ILIvG~g~------~g~~la~~L~~~-~~--~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~ 716 (745)
|+|||++. ....+++.|.+. .. .--.+.|+.... ..+.+ +.. ...|++ |..+.|++..++.|+
T Consensus 404 ivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~-~~~~~-w~~----i~~Fp~--Vy~v~Gspl~~~dL~ 475 (798)
T 3naf_A 404 VVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIE-YLKRE-WET----LHNFPK--VSILPGTPLSRADLR 475 (798)
T ss_dssp EEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHH-HHHHH-HTT----TTTSSS--EEBCBSCTTCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC-CCHHH-HHH----HHCCCC--EEEECCCCCCHHHHH
T ss_conf 8999806877503545883542420457722469989987887-57899-997----517996--699669989878899
Q ss_pred CCCCCCCCEEEEECCC
Q ss_conf 1999985469995575
Q 004558 717 SLPLETFDSMSHWKTR 732 (745)
Q Consensus 717 e~~I~~aDavIiltd~ 732 (745)
+++|..++.+||++++
T Consensus 476 ~anI~~a~~~VIls~~ 491 (798)
T 3naf_A 476 AVNINLCDMCVILSAN 491 (798)
T ss_dssp HTTSTTCSEEEEEESS
T ss_pred HHCHHHCCEEEEECCC
T ss_conf 8588769989997689
No 5
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=266.94 Aligned_cols=334 Identities=19% Similarity=0.243 Sum_probs=246.6
Q ss_pred CCCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCH-HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCC
Q ss_conf 0472999923762--8999999998111599980799996993-789999982100248962899996799988885268
Q 004558 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (745)
Q Consensus 381 ~k~HIIIiG~g~~--g~~Li~eL~~~~e~~~~~~iVVLiD~d~-e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg 457 (745)
.++|||||||.+. ...++++|..+++...+..+|++.+.+| ++++.++.++ ..++.|++||++++++|+||+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~~-----~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHHH-----CSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHCC
T ss_conf 988799977886889999999997436455687489996899979999998740-----586499992789999997519
Q ss_pred CCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHH
Q ss_conf 5564389994489--987711499999999995312898751999956999988898------74998366870489999
Q 004558 458 VSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIG 529 (745)
Q Consensus 458 I~~A~aIIiltdd--~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk------~~Gad~Ve~I~s~el~a 529 (745)
+++|+++|++++. .++.++|+.|+.+++++|+++|+ .+|||++.++++..+++ .+|+|.| |++.++.+
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~--i~IVA~~~~~en~~~L~ri~sw~~AGAd~V--I~~~el~g 152 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHPK--IRIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKL 152 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTT--SCEEEEESCHHHHGGGGGSTTCCTTTTCEE--EEHHHHHH
T ss_pred HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHCCCHHHCCCCEE--EEHHHHHH
T ss_conf 50147999976755567752479999999999976899--879999789778998860642121489889--96189999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCC------------------CCCCEEECCCC-CCCCCCHHHHHHH---CCCEEEEEEEEE
Q ss_conf 9999997088579999998337------------------88604421499-6578868767310---999199999994
Q 004558 530 RLMIQCALQPGLAQIWEDILGF------------------ENAEFYIKRWP-QLDDLRFEEVVIS---FPDAIPCGIKVA 587 (745)
Q Consensus 530 ~lLaq~~~~Pg~~~Vl~~Ll~~------------------~g~ei~i~~~s-~lvG~tl~El~~~---~~~~ivIGI~r~ 587 (745)
++|++++.+||+.+++.+++.. .+.++|....+ .++|++|+|+... ..+++++||.+.
T Consensus 153 ~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~ 232 (726)
T 3mt5_A 153 GFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYK 232 (726)
T ss_dssp HHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGGGTTSBHHHHHHHHHHTTCCEEEEEEC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999863998799999997234655553267899874457866999857954588799999998886088799999843
Q ss_pred E--CCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCC-----------CCCHH--------------------------
Q ss_conf 2--29918848999942528979999992899778899-----------96002--------------------------
Q 004558 588 A--EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGP-----------LPEVV-------------------------- 628 (745)
Q Consensus 588 ~--~~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~~~~~-----------~~~~i-------------------------- 628 (745)
. .+|++.+||+++++|++||.+++||++++..+-+. .|+.+
T Consensus 233 ~~~~~g~iilNP~~d~~I~~GD~LiVIa~s~~evkra~~yc~~ch~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~ 312 (726)
T 3mt5_A 233 SANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPSTLSPKKKQRNGG 312 (726)
T ss_dssp -----CCCEESCCTTCBCCTTCEEEEEESCHHHHHTTTSCCC--------------------------------------
T ss_pred CCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56889808989999868789998999979789976554012247765578778532777544556653334210234555
Q ss_pred --------HC----------------------------CCC----CCCC----------CCCCCCCEEEEECCCCH----
Q ss_conf --------10----------------------------234----5699----------99999951999925504----
Q 004558 629 --------CK----------------------------RSF----LKIP----------DPPKYPEKILFCGWRRD---- 654 (745)
Q Consensus 629 --------~~----------------------------~~~----~~~~----------~~~~~~~rILIvG~g~~---- 654 (745)
.+ |++ +... ....-..+|++|+.|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tgmfhw~~~~~l~~~~l~~~~~~~~~~~~HivvC~~~~~~s~~ 392 (726)
T 3mt5_A 313 MRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSAL 392 (726)
T ss_dssp -------------------------CTTGGGSCCEETTSCBBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 32367788533457853356721010035665532135624315886488875046666553046848999956877752
Q ss_pred --HHHHHHHHHHHCC---CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf --9999999986449---99869999069816888985238888578888339999857479856721999985469995
Q 004558 655 --IDDMIMVLEAFLA---PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSMSHW 729 (745)
Q Consensus 655 --g~~la~~L~~~~~---~g~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~aDavIil 729 (745)
...+++.|.+.-- .--.+.++....-.+|+=.... .||++. .+.|++..+..|++++|..+|.+|||
T Consensus 393 ~gl~~fvmpLRasn~~~~elk~IV~lg~~~~~~~ew~~l~------nfp~iy--~~~Gspl~~~dL~~~~i~~c~~cvil 464 (726)
T 3mt5_A 393 IGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLH------NFPKVS--ILPGTPLSRADLRAVNINLCDMCVIL 464 (726)
T ss_dssp CCTHHHHTGGGBTTSCGGGCCCEEEEECHHHHHHHHHHHT------TSSSEE--EEESCTTCHHHHHHTTGGGCSEEEEE
T ss_pred HHHHHHEEECCCCCCCHHHCCCEEEECCCCCCHHHHHHHH------CCCCEE--EECCCCCCHHHHHHHCHHHCCEEEEE
T ss_conf 4246621100135588767498899888853799999985------488617--85699687675988587558788996
Q ss_pred CC
Q ss_conf 57
Q 004558 730 KT 731 (745)
Q Consensus 730 td 731 (745)
+.
T Consensus 465 s~ 466 (726)
T 3mt5_A 465 SA 466 (726)
T ss_dssp EC
T ss_pred CC
T ss_conf 58
No 6
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=257.87 Aligned_cols=334 Identities=17% Similarity=0.226 Sum_probs=232.2
Q ss_pred CCCEEEEECCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf 0472999923762--89999999981115999807999969937899999821002489628999967999888852685
Q 004558 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (745)
Q Consensus 381 ~k~HIIIiG~g~~--g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI 458 (745)
.++|||||||+.. ...++++|....+...+..+|++.+.+++. + ++.. .+....+|.|++||++++++|+||++
T Consensus 2 gk~HivvcG~~~~~~l~~fL~ef~~~~~~~~~~~vVil~~~~p~~-e--l~~~-l~~~~~~v~~i~Gs~~~~~dL~ra~i 77 (722)
T 4hpf_A 2 GKKFIVVCGNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSL-E--LETI-FKCYLAYTTFISGSAMKWEDLRRVAV 77 (722)
T ss_dssp -CCEEEEESCCCHHHHHHHHTTC--------CCEEECCBSCC---------CC-CCTTTTSEECCBCCSSCHHHHHHHTG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-H--HHHH-HHHHCCEEEEEECCCCCHHHHHHCCC
T ss_conf 988899978897799999999985404402897499973899888-9--9998-76307669999758899999972594
Q ss_pred CCCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHH
Q ss_conf 5643899944899--877114999999999953128987519999569999888987------49983668704899999
Q 004558 459 SKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGR 530 (745)
Q Consensus 459 ~~A~aIIiltdd~--~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~------~Gad~Ve~I~s~el~a~ 530 (745)
++|+++|++++.. ++..+|+.|+++++++|+++|+ .+++|++.+++++.+++. +|+|.| |+..++.++
T Consensus 78 ~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~--~~iivq~~~~~n~~~~~~~~~~~~~gad~V--I~~~el~~~ 153 (722)
T 4hpf_A 78 ESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDST--TRIIIQILQSHNKVYLPKIPSWNWDTGDNI--ICFAELKLG 153 (722)
T ss_dssp GGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTT--CCEEEECSSGGGGGHHHHSTTCCTTTTCEE--ECHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHHCCCCEE--EEHHHHHHH
T ss_conf 2098999968976677516699999999999976899--979999787666899985124565279769--857998999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC------------------CCCEEECCCC-CCCCCCHHHHHHH---CCCEEEEEEEEEE
Q ss_conf 9999970885799999983378------------------8604421499-6578868767310---9991999999942
Q 004558 531 LMIQCALQPGLAQIWEDILGFE------------------NAEFYIKRWP-QLDDLRFEEVVIS---FPDAIPCGIKVAA 588 (745)
Q Consensus 531 lLaq~~~~Pg~~~Vl~~Ll~~~------------------g~ei~i~~~s-~lvG~tl~El~~~---~~~~ivIGI~r~~ 588 (745)
+|++++.+||+++++.+|+... +.|+|....| .++|++|.|+... ..+++++||.+..
T Consensus 154 lla~s~~~PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~~~~G~tf~e~~~~~~~~~~~iligi~~~~ 233 (722)
T 4hpf_A 154 FIAQGCLVPGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVARLCFLKMHLLLIAIEYKS 233 (722)
T ss_dssp HHHHHHHSTTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCGGGTTCBHHHHHHHHHHHSCCEEEEEEC--
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99998548987999999973256553301568999752668628995078011778999999999864685799863053
Q ss_pred ----CCCEEEECCCCCCEECCCCEEEEEEECCCCCCC---------------C---C------------CCC--------
Q ss_conf ----299188489999425289799999928997788---------------9---9------------960--------
Q 004558 589 ----EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP---------------G---P------------LPE-------- 626 (745)
Q Consensus 589 ----~~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~~~---------------~---~------------~~~-------- 626 (745)
.++++.+||+++++|++||.+++||++.+..+. . . .+.
T Consensus 234 ~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (722)
T 4hpf_A 234 LFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALFYCSVCHDDVFIPELITNCGCKSRSRQHITVPSVKRMKKCL 313 (722)
T ss_dssp -----CCCCEESCCTTCBCCTTCEEEEEBSCHHHHHGGGC----------------------------------------
T ss_pred CCCCCCCEEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32367873998899883777998899997988997666420000122355566776458854344566677655443334
Q ss_pred ---------------------------------HHHC--------CC-------------CCCC-CCCCCCCCEEEEECC
Q ss_conf ---------------------------------0210--------23-------------4569-999999951999925
Q 004558 627 ---------------------------------VVCK--------RS-------------FLKI-PDPPKYPEKILFCGW 651 (745)
Q Consensus 627 ---------------------------------~i~~--------~~-------------~~~~-~~~~~~~~rILIvG~ 651 (745)
.++. +. +... .....-..+++|||-
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nhivvc~~ 393 (722)
T 4hpf_A 314 KGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQLDSSGMFHWCKPTSLDKVTLKRTGKSKYKFRNHIVACVF 393 (722)
T ss_dssp ---------------------------------------CCBCSSSSBBCCCCCCHHHHBCCCCC---CCCCSCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEC
T ss_conf 45565546767863344555445677653222344566433355674035687551122201224442034687799953
Q ss_pred C------CHHHHHHHHHHHHCCCC---CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCC
Q ss_conf 5------04999999998644999---86999906981688898523888857888833999985747985672199998
Q 004558 652 R------RDIDDMIMVLEAFLAPG---SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (745)
Q Consensus 652 g------~~g~~la~~L~~~~~~g---~~v~IIe~~p~~er~~~l~e~g~~~~~L~~~~V~~i~GD~td~~~L~e~~I~~ 722 (745)
+ ...+.++..|.++-.+. -.+.++... +.... .+.. ...|++ |.++.|++...+.|+++||..
T Consensus 394 ~~~~~~~~gL~~fi~PLRa~~~~~~el~pIViL~~~-~~~~~-~w~~----i~~Fp~--Vy~~~GSpl~~~DL~ragi~~ 465 (722)
T 4hpf_A 394 GDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSL-DYLQR-EWRF----LWNFPQ--IYILPGCALYSGDLHAANIEQ 465 (722)
T ss_dssp CCTTSCCCCSHHHHGGGGBTTSCGGGCCCEEEEECH-HHHHH-HGGG----GTTCSS--EEEEESCTTCHHHHHHTTGGG
T ss_pred CCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECC-CCCHH-HHHH----HHCCCC--EEEEECCCCCHHHHHHCCCCC
T ss_conf 684423342223124311223552457998998389-98889-9998----765898--799989868788887607301
Q ss_pred CCEEEEEC
Q ss_conf 54699955
Q 004558 723 FDSMSHWK 730 (745)
Q Consensus 723 aDavIilt 730 (745)
|+.+|+++
T Consensus 466 a~~vVIl~ 473 (722)
T 4hpf_A 466 CSMCAVLS 473 (722)
T ss_dssp CSEEEEEC
T ss_pred CCEEEEEC
T ss_conf 15899986
No 7
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=208.65 Aligned_cols=209 Identities=17% Similarity=0.214 Sum_probs=173.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 47299992376289999999981115999807999969937899999821002489628999967999888852685564
Q 004558 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (745)
Q Consensus 382 k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~A 461 (745)
.+|++|||||+.|..++++|.+.+ +.|+++|.|++.++.. . .++.||+++++.|+++|+++|
T Consensus 348 ~~~viIiG~G~~G~~la~~L~~~g------~~v~vid~d~~~~~~~-----------~-~~i~gD~t~~~~L~~agi~~a 409 (565)
T 4gx0_A 348 DELIFIIGHGRIGCAAAAFLDRKP------VPFILIDRQESPVCND-----------H-VVVYGDATVGQTLRQAGIDRA 409 (565)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT------CCEEEEESSCCSSCCS-----------S-CEEESCSSSSTHHHHHTTTSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC------CCEEEEECCHHHHHHC-----------C-CEEEECCCCHHHHHHCCCCCC
T ss_conf 998899898878999999999879------9789997886898626-----------8-789907899899986492413
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCH
Q ss_conf 38999448998771149999999999531289875199995699998889874998366870489999999999708857
Q 004558 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (745)
Q Consensus 462 ~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~I~s~el~a~lLaq~~~~Pg~ 541 (745)
+++|+++++ |+.|+.+|+.+|++++. .++||++.++++.+.++.+|+|.| +.+....++.+++.+..+..
T Consensus 410 d~vi~~~~~------d~~ni~~~~~ak~l~~~--~~iiar~~~~~~~~~l~~~G~d~v--i~p~~~~~~~i~~~~~~~~~ 479 (565)
T 4gx0_A 410 SGIIVTTND------DSTNIFLTLACRHLHSH--IRIVARANGEENVDQLYAAGADFV--VSNASVGANILGNLLEHKES 479 (565)
T ss_dssp SEEEECCSC------HHHHHHHHHHHHHHCSS--SEEEEEESSTTSHHHHHHHTCSEE--EEHHHHHHHHHHHHHHCC--
T ss_pred CEEEEECCC------CHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECCCHHHHHHHHHHHCCHHH
T ss_conf 999997798------26799999999987899--879999788777999997699899--81400799999997356445
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCCC
Q ss_conf 99999983378860442149965788687673109-99199999994229918848999942528979999992899778
Q 004558 542 AQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (745)
Q Consensus 542 ~~Vl~~Ll~~~g~ei~i~~~s~lvG~tl~El~~~~-~~~ivIGI~r~~~~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~~ 620 (745)
..+.+ +-..+.+...++++|++++|+..+. +++.++||.|. ++|+...+|.++++|++||.++++|+.+++.+
T Consensus 480 ~~~~~-----~~~~~~v~~~s~~~Gk~l~el~l~~~~~~~v~aI~R~-~~~~~~~~p~~~~~l~~GD~liv~g~~~~i~~ 553 (565)
T 4gx0_A 480 AFLSE-----GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAP-DRADILISPPPETILAEGARLILIGTSEQEKT 553 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHC-----CEEEEEECCCCCCCCCCHHHCCHHHHCCCEEEEEEEC-CCCCEEECCCCCCEECCCCEEEEEECHHHHHH
T ss_conf 03515-----7299997289875888889913366529789999967-99955889699878789999999988999999
Q ss_pred CCCC
Q ss_conf 8999
Q 004558 621 PGPL 624 (745)
Q Consensus 621 ~~~~ 624 (745)
+...
T Consensus 554 ~~~~ 557 (565)
T 4gx0_A 554 FDQT 557 (565)
T ss_dssp ----
T ss_pred HHHH
T ss_conf 9998
No 8
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=1.00 E-value=1 Score=202.00 Aligned_cols=219 Identities=24% Similarity=0.383 Sum_probs=183.3
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 48642000472999923762899999999811159998079999699378999998210024896289999679998888
Q 004558 374 KGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (745)
Q Consensus 374 ~G~~~v~~k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L 453 (745)
+|+.++..++|++|||+|+.|..++++|... ++ |+++|++++.++.+. .++.++.||+++++.|
T Consensus 1 ~G~~~~~~~~~viI~G~G~~G~~la~~L~~~------g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l 64 (234)
T 2aef_A 1 MGLIDVAKSRHVVICGWSESTLECLRELRGS------EV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDL 64 (234)
T ss_dssp ---------CEEEEESCCHHHHHHHHHSTTS------EE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHC------CE-EEEEECCHHHHHHHH---------CCCEEEECCCCCHHHH
T ss_conf 9988878789799989976899999998749------92-999978989999986---------6981998488778999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 52685564389994489987711499999999995312898751999956999988898749983668704899999999
Q 004558 454 KKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMI 533 (745)
Q Consensus 454 ~rAgI~~A~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~I~s~el~a~lLa 533 (745)
+++++++|+.+|+++++ |+.|+.+++.+|+++++ .++|+++.++++.+.++.+|+|.+ +.+.+..+..|+
T Consensus 65 ~~a~i~~ad~vi~~~~~------d~~n~~~~~~a~~~~~~--~~iia~~~~~~~~~~l~~~G~~~v--i~p~~~~a~~l~ 134 (234)
T 2aef_A 65 EKANVRGARAVIVDLES------DSETIHCILGIRKIDES--VRIIAEAERYENIEQLRMAGADQV--ISPFVISGRLMS 134 (234)
T ss_dssp HHTTCTTCSEEEECCSC------HHHHHHHHHHHHHHCSS--SEEEEECSSGGGHHHHHHHTCSEE--ECHHHHHHHHHH
T ss_pred HHCCCCHHCEEEECCCC------CHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCEE--ECHHHHHHHHHH
T ss_conf 86694032599991798------38899999999987899--869999788767999997799999--988887999999
Q ss_pred HHHCCCCHHHHHHHHHCCC-C---CCEEECCCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCE
Q ss_conf 9970885799999983378-8---60442149965788687673109-99199999994229918848999942528979
Q 004558 534 QCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDE 608 (745)
Q Consensus 534 q~~~~Pg~~~Vl~~Ll~~~-g---~ei~i~~~s~lvG~tl~El~~~~-~~~ivIGI~r~~~~g~v~lnP~~dtvL~~GD~ 608 (745)
+.+..|++.+++++++... + .++.+.+.++++|++++|+..+. +++.+++|.| +|+..++|.++++|++||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R---~~~~~~~p~~~~~l~~GD~ 211 (234)
T 2aef_A 135 RSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRAGDI 211 (234)
T ss_dssp HTSSCSHHHHHHHHHHC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE---TTEEEESCCTTCBCCTTCE
T ss_pred HHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEEEE---CCEEEECCCCCCEECCCCE
T ss_conf 9982912899999996177884699999799996289798993430406929999998---9937848999878879999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999928997788
Q 004558 609 VLVIAEDDDTYAP 621 (745)
Q Consensus 609 LiVIa~~~~~~~~ 621 (745)
++++|+.+++.++
T Consensus 212 l~v~g~~~~l~~~ 224 (234)
T 2aef_A 212 ILGIGKPEEIERL 224 (234)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999889999999
No 9
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=189.12 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=172.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 72999923762899999999811159998079999699378999998210024896289999679998888526855643
Q 004558 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (745)
Q Consensus 383 ~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~A~ 462 (745)
++|+|||+|..|..+++.|...+ +.|+++|.|++.++.+.++ .++.++.||+++++.|+++++++|+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g------~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad 67 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK------YGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKND 67 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT------CCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHH-------CCCEEEECCCCCHHHHHHCCCCCCC
T ss_conf 98999989889999999999689------9299997998999999987-------6986999279898899866966289
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH
Q ss_conf 89994489987711499999999995312898751999956999988898749983668704899999999997088579
Q 004558 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (745)
Q Consensus 463 aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~I~s~el~a~lLaq~~~~Pg~~ 542 (745)
.+|+++++ |+.|+.++..++.+++. .++|+++.++++.+.++.+|+|.| +.+.+..++.+++.+..|++.
T Consensus 68 ~vi~~~~~------d~~n~~~~~~a~~~~~~--~~iia~~~~~~~~~~l~~~G~d~v--i~p~~~~~~~l~~~~~~~~~~ 137 (218)
T 3l4b_C 68 VVVILTPR------DEVNLFIAQLVMKDFGV--KRVVSLVNDPGNMEIFKKMGITTV--LNLTTLITNTVEALIFPDEFS 137 (218)
T ss_dssp EEEECCSC------HHHHHHHHHHHHHTSCC--CEEEECCCSGGGHHHHHHHTCEEC--CCHHHHHHHHHHHHHCTTSCE
T ss_pred EEEEECCC------CHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHCCCCEE--ECHHHHHHHHHHHHHCCCCCE
T ss_conf 99993699------68999999999987699--759999948446899987799999--999999999999971467742
Q ss_pred HHHHHHHCCCC---CCEEECCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCC
Q ss_conf 99999833788---604421499657886876731099919999999422991884899994252897999999289977
Q 004558 543 QIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (745)
Q Consensus 543 ~Vl~~Ll~~~g---~ei~i~~~s~lvG~tl~El~~~~~~~ivIGI~r~~~~g~v~lnP~~dtvL~~GD~LiVIa~~~~~~ 619 (745)
+++. + .++ .++.+.+.++++|++++|+... .++.+++|.| +|+. ++|.++++|++||.++++|+.+++.
T Consensus 138 ~~~~--~-~~~~~~~e~~v~~~s~~~gk~l~el~~~-~~~~i~~i~R---~~~~-~~p~~~~~l~~gD~l~v~g~~~~~~ 209 (218)
T 3l4b_C 138 SIIP--L-EQGIEFLSVNVEEDSPVVGKKLKDLPLP-RDSIIAAIVR---GGVL-VVPRGDTEILSGDKLYVIVSAEAKE 209 (218)
T ss_dssp ECSC--C-STTEEEEEEECCTTCSSTTCBTTTSCCC-TTEEEEEEEE---SSCE-ECCCTTCBCCTTEEEEEEEEGGGHH
T ss_pred EEEE--E-CCCCEEEEEEECCCCCCCCCCHHHCCCC-CCCEEEEEEE---CCEE-ECCCCCCEECCCCEEEEEECHHHHH
T ss_conf 7888--2-7984999999799995368899998999-9949999998---9999-8579998888899999998899999
Q ss_pred CC
Q ss_conf 88
Q 004558 620 AP 621 (745)
Q Consensus 620 ~~ 621 (745)
++
T Consensus 210 ~~ 211 (218)
T 3l4b_C 210 TV 211 (218)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 10
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=188.87 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=169.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCC
Q ss_conf 04729999237628999999998111599980799996993789999982100248962899996799988885268556
Q 004558 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (745)
Q Consensus 381 ~k~HIIIiG~g~~g~~Li~eL~~~~e~~~~~~iVVLiD~d~e~ie~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgI~~ 460 (745)
..++++|+|+|+.|..+++.|.. .+.|.++|.|+++++.+.+++ .+..+++||+++++.|+++|+++
T Consensus 234 ~~~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~L~ee~i~~ 300 (461)
T 4g65_A 234 PYRRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQELLTEENIDQ 300 (461)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHHHHHTTGGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-------CCCEEEEECCHHHHHHHHHHC------CCCEEEECCCCCHHHHHHCCCHH
T ss_conf 55279998113899999997522-------472699826889999999878------98648834545455576618222
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 43899944899877114999999999953128987519999569999888987499836687048999999999970885
Q 004558 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (745)
Q Consensus 461 A~aIIiltdd~~~~~sD~~NI~~~Lsak~l~p~~~~~IIArv~d~e~~~~lk~~Gad~Ve~I~s~el~a~lLaq~~~~Pg 540 (745)
|+++|++|++ |+.|+++|+.+|+++. .++|+++.+++|.+.++..|+|.+ +.+...++..+.+.+..++
T Consensus 301 ~D~~ia~T~~------De~Ni~~~llAk~~gv---~kvIa~vn~~~~~~l~~~~gid~v--isp~~~~a~~I~~~i~~~~ 369 (461)
T 4g65_A 301 VDVFIALTNE------DETNIMSAMLAKRMGA---KKVMVLIQRGAYVDLVQGGVIDVA--ISPQQATISALLTHVRRAD 369 (461)
T ss_dssp CSEEEECCSC------HHHHHHHHHHHHHTTC---SEEEEECSCHHHHHHHCSSSSCEE--ECHHHHHHHHHHHHHHHTT
T ss_pred HCEEEECCCC------CHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHCCCCCEE--ECHHHHHHHHHHHHHHCCC
T ss_conf 3479984568------1789999999997399---640000346303444421465402--0789999999999854256
Q ss_pred HHHHHHHHHCCCC--CCEEEC---CCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEE-
Q ss_conf 7999999833788--604421---4996578868767310999199999994229918848999942528979999992-
Q 004558 541 LAQIWEDILGFEN--AEFYIK---RWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAE- 614 (745)
Q Consensus 541 ~~~Vl~~Ll~~~g--~ei~i~---~~s~lvG~tl~El~~~~~~~ivIGI~r~~~~g~v~lnP~~dtvL~~GD~LiVIa~- 614 (745)
+.++.. +..... -|+... +.++++|++++|+.. ..++++++|.| +|+ .+.|.++++|++||+++++..
T Consensus 370 v~~v~~-l~~g~ae~iE~~~~~~~~~S~~vGk~l~dl~l-p~g~~I~aI~R---~~~-~iiP~gdt~i~~gD~vivf~~~ 443 (461)
T 4g65_A 370 IVNVSS-LRRGAAEAIEAVAHGDESNSKVVGRAVGDIKL-PPGTTIGAIVR---GEE-VLIAHDRTVIEQDDHVVMFLVD 443 (461)
T ss_dssp CCCEEE-CGGGSCEEEEEECCSCGGGCSSTTSBGGGSCC-CTTEEEEEEEE---TTE-EEECCTTCBCCTTCEEEEEESC
T ss_pred CCEEEE-ECCCCEEEEEEEEECCCCCCCCCCCCHHHCCC-CCCCEEEEEEE---CCE-EECCCCCCEECCCCEEEEEECC
T ss_conf 532798-15885379999996478898537959998799-99969999998---999-9917999788899999999868
Q ss_pred CCCCCC
Q ss_conf 899778
Q 004558 615 DDDTYA 620 (745)
Q Consensus 615 ~~~~~~ 620 (745)
.+.+.+
T Consensus 444 ~~~i~~ 449 (461)
T 4g65_A 444 KKYVPD 449 (461)
T ss_dssp GGGHHH
T ss_pred HHHHHH
T ss_conf 878999
Done!