BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004561
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 244/767 (31%), Positives = 387/767 (50%), Gaps = 68/767 (8%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIM 65
+P AR FPC+DEP KA F I + S +ALSNMP + +++G + ++ + M
Sbjct: 200 EPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKM 259
Query: 66 STYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYS 125
STYLVA ++ F + TS G+KV +Y K NQ +AL ++K L+ Y++YF + Y
Sbjct: 260 STYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYP 319
Query: 126 LPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V V+AHELAHQWFGN
Sbjct: 320 LSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGN 379
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVE 245
LVTMEWW +WLNEGFA ++ +A ++ +PE + FL+ C E + D L S PI
Sbjct: 380 LVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKP 439
Query: 246 VNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAAL 305
+I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++ NAK +DLW++L
Sbjct: 440 AETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSL 499
Query: 306 EE---------------------------GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXX 338
G V ++M +WT QKG P++
Sbjct: 500 SNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSL 559
Query: 339 XXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLG 389
D + W +P+T S +V +L +K+D+ D+ E
Sbjct: 560 RLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE--- 616
Query: 390 CSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFA 447
W+K NV+ G+Y V Y+ +L + L DR G++ D F
Sbjct: 617 --------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQ 668
Query: 448 LCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDY---LKQFF 504
L A + TL L + ET L L +SY R + D LK++
Sbjct: 669 LVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRNISDISENLKRYL 726
Query: 505 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTP 564
+ F+ ++ W K S D +LR + L H + +A++ F ++
Sbjct: 727 LQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKL 784
Query: 565 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLE 624
+P D+ K Y V A +G+ LL Y + S E+ +IL +L++ +L+
Sbjct: 785 NIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLK 839
Query: 625 VLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFIS 679
++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K + G + I IS
Sbjct: 840 LIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIIS 899
Query: 680 SIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
+ F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 900 GTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 243/767 (31%), Positives = 386/767 (50%), Gaps = 68/767 (8%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIM 65
+P AR FPC+DEP KA F I + S +ALSNMP + +++G + ++ + M
Sbjct: 200 EPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKM 259
Query: 66 STYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYS 125
STYLVA ++ F + TS G+KV +Y K NQ +AL ++K L+ Y++YF + Y
Sbjct: 260 STYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYP 319
Query: 126 LPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
L KLD+IAIPDFA GAMEN+GL+TYRET+LL+D + S+A++K V V+AHELAHQWFGN
Sbjct: 320 LSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGN 379
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVE 245
LVTMEWW +WL EGFA ++ +A ++ +PE + FL+ C E + D L S PI
Sbjct: 380 LVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKP 439
Query: 246 VNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAAL 305
+I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++ NAK +DLW++L
Sbjct: 440 AETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSL 499
Query: 306 EE---------------------------GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXX 338
G V ++M +WT QKG P++
Sbjct: 500 SNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSL 559
Query: 339 XXXXXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLG 389
D + W +P+T S +V +L +K+D+ D+ E
Sbjct: 560 RLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE--- 616
Query: 390 CSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFA 447
W+K NV+ G+Y V Y+ +L + L DR G++ D F
Sbjct: 617 --------KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQ 668
Query: 448 LCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDY---LKQFF 504
L A + TL L + ET L L +SY R + D LK++
Sbjct: 669 LVGAGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRNISDISENLKRYL 726
Query: 505 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTP 564
+ F+ ++ W K S D +LR + L H + +A++ F ++
Sbjct: 727 LQYFKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKL 784
Query: 565 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLE 624
+P D+ K Y V A +G+ LL Y + S E+ +IL +L++ +L+
Sbjct: 785 NIPTDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLK 839
Query: 625 VLNFLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFIS 679
++ + +V ++Q+ ++ +A +G++ AW ++++NW H+ K + G + I IS
Sbjct: 840 LIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIIS 899
Query: 680 SIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
+ F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 900 GTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/758 (32%), Positives = 384/758 (50%), Gaps = 55/758 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV----DGNMKTVSYQES 62
Q DAR+ FPC+DEPA KATF ITL P+ L ALSNMP D N ++ +
Sbjct: 147 QSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETT 206
Query: 63 PIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK--FALNVAVKTLELYKEYF 120
P+MSTYL+A ++ F V + +G+ +R++ + +G +ALNV L + ++
Sbjct: 207 PVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHY 266
Query: 121 AVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 180
Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+ +NK+RV TV+AHELAH
Sbjct: 267 NTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAH 326
Query: 181 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL-DECTEGLRLDGLAES 239
QWFGNLVT+ WW LWLNEGFA++V YL AD P W + + + + +D LA S
Sbjct: 327 QWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASS 386
Query: 240 HPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA 296
HP+ EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N
Sbjct: 387 HPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNT 446
Query: 297 KTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XX 343
DLW L++ + V +M+ WT Q G+PVI
Sbjct: 447 TYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSE 506
Query: 344 XXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 403
S D WIVPI+ KN ++ + D+ + D+ W+
Sbjct: 507 SNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVL 557
Query: 404 LNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLT 461
LNVN TG+++V YD+D + + ++ + + +R ++ D F L A +T L
Sbjct: 558 LNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALD 617
Query: 462 LMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL-- 515
+ E EY LS+L S R ++ + YL++ LFQ+ E L
Sbjct: 618 NTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTK 674
Query: 516 GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 575
W +P E+ +D + G + N A F +++D + P++R Y
Sbjct: 675 NWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 733
Query: 576 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-V 634
++ + ++ ++ L E ++ S+LA +V ++ L + L+ + +
Sbjct: 734 C---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLI 790
Query: 635 RSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 690
R QDA + +A ++ G+ AW +++ NW + + +G G F + I + F+S +
Sbjct: 791 RKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFE 850
Query: 691 VREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 725
++++E+F + R L Q++E+ + N KWV+
Sbjct: 851 LQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 888
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/758 (32%), Positives = 384/758 (50%), Gaps = 55/758 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV----DGNMKTVSYQES 62
Q DAR+ FPC+DEPA KATF ITL P+ L ALSNMP D N ++ +
Sbjct: 190 QSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETT 249
Query: 63 PIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK--FALNVAVKTLELYKEYF 120
P+MSTYL+A ++ F V + +G+ +R++ + +G +ALNV L + ++
Sbjct: 250 PVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHY 309
Query: 121 AVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 180
Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+ +NK+RV TV+AHELAH
Sbjct: 310 NTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAH 369
Query: 181 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAES 239
QWFGNLVT+ WW LWLNEGFA++V YL AD P W + + + + +D LA S
Sbjct: 370 QWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASS 429
Query: 240 HPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA 296
HP+ EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N
Sbjct: 430 HPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNT 489
Query: 297 KTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XX 343
DLW L++ + V +M+ WT Q G+PVI
Sbjct: 490 TYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSE 549
Query: 344 XXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 403
S D WIVPI+ KN ++ + D+ + D+ W+
Sbjct: 550 SNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVL 600
Query: 404 LNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLT 461
LNVN TG+++V YD+D + + ++ + + +R ++ D F L A +T L
Sbjct: 601 LNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALD 660
Query: 462 LMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL-- 515
+ E EY LS+L S R ++ + YL++ LFQ+ E L
Sbjct: 661 NTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTK 717
Query: 516 GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 575
W +P E+ +D + G + N A F +++D + P++R Y
Sbjct: 718 NWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 776
Query: 576 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-V 634
++ + ++ ++ L E ++ S+LA +V ++ L + L+ + +
Sbjct: 777 C---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLI 833
Query: 635 RSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 690
R QDA + +A ++ G+ AW +++ NW + + +G G F + I + F+S +
Sbjct: 834 RKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFE 893
Query: 691 VREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 725
++++E+F + R L Q++E+ + N KWV+
Sbjct: 894 LQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 931
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/758 (32%), Positives = 384/758 (50%), Gaps = 55/758 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV----DGNMKTVSYQES 62
Q DAR+ FPC+DEPA KATF ITL P+ L ALSNMP D N ++ +
Sbjct: 146 QSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETT 205
Query: 63 PIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK--FALNVAVKTLELYKEYF 120
P+MSTYL+A ++ F V + +G+ +R++ + +G +ALNV L + ++
Sbjct: 206 PVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHY 265
Query: 121 AVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 180
Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+ +NK+RV TV+AHELAH
Sbjct: 266 NTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAH 325
Query: 181 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAES 239
QWFGNLVT+ WW LWLNEGFA++V YL AD P W + + + + +D LA S
Sbjct: 326 QWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASS 385
Query: 240 HPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA 296
HP+ EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N
Sbjct: 386 HPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNT 445
Query: 297 KTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XX 343
DLW L++ + V +M+ WT Q G+PVI
Sbjct: 446 TYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSE 505
Query: 344 XXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 403
S D WIVPI+ KN ++ + D+ + D+ W+
Sbjct: 506 SNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVL 556
Query: 404 LNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLT 461
LNVN TG+++V YD+D + + ++ + + +R ++ D F L A +T L
Sbjct: 557 LNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALD 616
Query: 462 LMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL-- 515
+ E EY LS+L S R ++ + YL++ LFQ+ E L
Sbjct: 617 NTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTK 673
Query: 516 GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 575
W +P E+ +D + G + N A F +++D + P++R Y
Sbjct: 674 NWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 732
Query: 576 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-V 634
++ + ++ ++ L E ++ S+LA +V ++ L + L+ + +
Sbjct: 733 C---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLI 789
Query: 635 RSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 690
R QDA + +A ++ G+ AW +++ NW + + +G G F + I + F+S +
Sbjct: 790 RKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFE 849
Query: 691 VREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 725
++++E+F + R L Q++E+ + N KWV+
Sbjct: 850 LQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/758 (32%), Positives = 384/758 (50%), Gaps = 55/758 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV----DGNMKTVSYQES 62
Q DAR+ FPC+DEPA KATF ITL P+ L ALSNMP D N ++ +
Sbjct: 146 QSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETT 205
Query: 63 PIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGK--FALNVAVKTLELYKEYF 120
P+MSTYL+A ++ F V + +G+ +R++ + +G +ALNV L + ++
Sbjct: 206 PVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHY 265
Query: 121 AVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 180
Y LPK D IA+PDF AGAMEN+GLVTYRE ALL+D Q S+ +NK+RV TV+AH+LAH
Sbjct: 266 NTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAH 325
Query: 181 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAES 239
QWFGNLVT+ WW LWLNEGFA++V YL AD P W + + + + +D LA S
Sbjct: 326 QWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASS 385
Query: 240 HPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA 296
HP+ EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N
Sbjct: 386 HPLTTPAEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNT 445
Query: 297 KTEDLWAALEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XX 343
DLW L++ + V +M+ WT Q G+PVI
Sbjct: 446 TYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSE 505
Query: 344 XXXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIK 403
S D WIVPI+ KN ++ + D+ + D+ W+
Sbjct: 506 SNVTRSSAFDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVL 556
Query: 404 LNVNQTGFYRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLT 461
LNVN TG+++V YD+D + + ++ + + +R ++ D F L A +T L
Sbjct: 557 LNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALD 616
Query: 462 LMASYSEETEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL-- 515
+ E EY LS+L S R ++ + YL++ LFQ+ E L
Sbjct: 617 NTLFLNGEKEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTK 673
Query: 516 GWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 575
W +P E+ +D + G + N A F +++D + P++R Y
Sbjct: 674 NWTERP-ENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIY 732
Query: 576 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-V 634
++ + ++ ++ L E ++ S+LA +V ++ L + L+ + +
Sbjct: 733 C---NAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLI 789
Query: 635 RSQDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 690
R QDA + +A ++ G+ AW +++ NW + + +G G F + I + F+S +
Sbjct: 790 RKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFE 849
Query: 691 VREVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 725
++++E+F + R L Q++E+ + N KWV+
Sbjct: 850 LQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/768 (31%), Positives = 382/768 (49%), Gaps = 76/768 (9%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIM 65
+P AR FPC+DEPA KA+F I + +A+SNMP++ V + + + M
Sbjct: 189 EPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKM 248
Query: 66 STYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYS 125
STYLVA +I F+ V T G+KV VY K NQ +AL+ AV LE Y++YF++PY
Sbjct: 249 STYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYP 308
Query: 126 LPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K + VAHELAHQWFGN
Sbjct: 309 LPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGN 368
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVE 245
LVTMEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L SHP+
Sbjct: 369 LVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTP 428
Query: 246 VNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAAL 305
V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K EDLW ++
Sbjct: 429 VENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSM 488
Query: 306 EE---------------------------GSGEPVNKLMNSWTKQKGYPVIXXXX--XXX 336
G V +MN+WT QKG+P+I
Sbjct: 489 ASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNV 548
Query: 337 XXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKE 395
G+P G W VP+T D+ FLL K+D + E +
Sbjct: 549 HMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEV------- 601
Query: 396 GDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQ 453
WIK NV G+Y V Y+ D L ++ +S DR ++++ F L +
Sbjct: 602 ----EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGK 657
Query: 454 QTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQ 509
++ L L ETE + L+ LI + YK+ + E+ K F I L +
Sbjct: 658 LSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLR 714
Query: 510 NSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPD 569
+ +K W + S + +LR ++ + ++ + A F + LP D
Sbjct: 715 DLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVD 772
Query: 570 IRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFL 629
+ A + V A G++ L Y+ + S EK++I A C N E L +L
Sbjct: 773 VTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN--KEKLQWL 823
Query: 630 L-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFI 678
L ++++Q+ + +++ GR AW++L+ NW+ + + + G I +
Sbjct: 824 LDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMV 881
Query: 679 SSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
+ F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 882 MGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 929
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 247/776 (31%), Positives = 384/776 (49%), Gaps = 92/776 (11%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPI-- 64
+P AR FPC+DEPA KA+F I + +A+SNMP++ K+V+ E I
Sbjct: 138 EPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV--------KSVTVAEGLIED 189
Query: 65 -------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYK 117
MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV LE Y+
Sbjct: 190 HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYE 249
Query: 118 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 177
+YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K + VAHE
Sbjct: 250 DYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHE 309
Query: 178 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA 237
LAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L
Sbjct: 310 LAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALN 369
Query: 238 ESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK 297
SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K
Sbjct: 370 SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTK 429
Query: 298 TEDLWAALEE---------------------------GSGEPVNKLMNSWTKQKGYPVIX 330
EDLW ++ G V +MN+WT QKG+P+I
Sbjct: 430 NEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLIT 489
Query: 331 XXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKEL 387
G+P G W VP+T D+ FLL K+D + E
Sbjct: 490 ITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEE 549
Query: 388 LGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDH 445
+ WIK NV G+Y V Y+ D L ++ +S DR ++++
Sbjct: 550 V-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNA 598
Query: 446 FALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLK 501
F L + ++ L L ETE + L+ LI + YK+ + E+ K
Sbjct: 599 FQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFK 655
Query: 502 QFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADR 561
F I L ++ +K W + S + +LR ++ + ++ + A F +
Sbjct: 656 AFLIRLLRDLIDKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESN 713
Query: 562 TTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNI 621
LP D+ A + V A G++ L Y+ + S EK++I A C N
Sbjct: 714 GNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN- 765
Query: 622 VLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG 671
E L +LL ++++Q+ + +++ GR AW++L+ NW+ + + + G
Sbjct: 766 -KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELG 822
Query: 672 -FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
I + + F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 823 SSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 878
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 246/756 (32%), Positives = 383/756 (50%), Gaps = 53/756 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNM----PVIDEKVDGNMKTVSYQES 62
Q DAR+ FPC+DEPA KA F ITL P +L ALSNM P D N + +
Sbjct: 149 QAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEFHTT 208
Query: 63 PIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK--ANQGKFALNVAVKTLELYKEYF 120
P MSTYL+A ++ FDYVE S+G+ +R++ + A G +ALNV L + ++
Sbjct: 209 PKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHY 268
Query: 121 AVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 180
PY LPK D I +PDF AGAMEN+GLVTYRE +LL+D S+++NK+RV TV+AHELAH
Sbjct: 269 DTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAH 328
Query: 181 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWT-QFLDECTEGLRLDGLAES 239
QWFGNLVT+EWW LWLNEGFA++V YL AD P W + L++ + +D LA S
Sbjct: 329 QWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASS 388
Query: 240 HPIEV---EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA 296
HP+ E+N +I E+FDAISY KGASV+RML ++L + F++ LASY+ +A N
Sbjct: 389 HPLSTPASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNT 448
Query: 297 KTEDLWAALEEGSGE-------PVNKLMNSWTKQKGYPVIXXXXXXXXXXXXX-----XX 344
+LW L+E V +MN WT Q G+PVI
Sbjct: 449 IYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFLLDPDS 508
Query: 345 XXXXGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKL 404
S + WIVPIT +L+ D +L S ++ W+ L
Sbjct: 509 NVTRPSEFNYVWIVPITSIRDGRQQQDYWLI----DVRAQNDLFSTSGNE------WVLL 558
Query: 405 NVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTL 462
N+N TG+YRV YD++ ++ ++ + +R I++D F L A + +T L
Sbjct: 559 NLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNN 618
Query: 463 MASYSEETEYTVL-SNLITISY-KIGRIAADARPELLDYLKQFFISL---FQNSAEKLGW 517
EE +Y + L ++SY K+ ++ + +YLK+ L F+N+ W
Sbjct: 619 TLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTN--NW 676
Query: 518 DSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVA 577
P E+ +D + G E S F ++ + + P++R Y
Sbjct: 677 REIP-ENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYC- 734
Query: 578 VMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 636
++ ++ +R L E ++ ++LA ++ I+ L++ L+ + +R
Sbjct: 735 --NAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRK 792
Query: 637 QDA---VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVR 692
QDA + + ++ G+ W +++ NW + +G G F + I ++ F++ +++
Sbjct: 793 QDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQ 852
Query: 693 EVEEFFSSRCKPYIA---RTLRQSIERVQINAKWVE 725
++E+F + R L Q++E+ + N KWV+
Sbjct: 853 QLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVK 888
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 248/776 (31%), Positives = 385/776 (49%), Gaps = 92/776 (11%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPI-- 64
+P AR FPC+DEPA KA+F I + +A+SNMP++ K+V+ E I
Sbjct: 147 EPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLV--------KSVTVAEGLIED 198
Query: 65 -------MSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYK 117
MSTYLVA +I F+ V T G+KV VY K NQ +AL+ AV LE Y+
Sbjct: 199 HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYE 258
Query: 118 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 177
+YF++PY LPK D+ AIPDF +GAMEN+GL TYRE+ALL+D + S+A++K + VAHE
Sbjct: 259 DYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHE 318
Query: 178 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA 237
LAHQWFGNLVTMEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L
Sbjct: 319 LAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALN 378
Query: 238 ESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK 297
SHP+ V + +I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K
Sbjct: 379 SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTK 438
Query: 298 TEDLW---AALEEGSGEP------------------------VNKLMNSWTKQKGYPVIX 330
EDLW A++ G V +MN+WT Q+G+P+I
Sbjct: 439 NEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMNTWTLQRGFPLIT 498
Query: 331 XXX--XXXXXXXXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKEL 387
G+P G W VP+T D+ FLL K+D + E
Sbjct: 499 ITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEE 558
Query: 388 LGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDH 445
+ WIK NV G+Y V Y+ D L ++ +S DR ++++
Sbjct: 559 V-----------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNA 607
Query: 446 FALCMARQQTLTSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLK 501
F L + ++ L L ETE + L+ LI + YK+ + E+ K
Sbjct: 608 FQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFK 664
Query: 502 QFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADR 561
F I L ++ +K W + S + +LR E+ + ++ + A F +
Sbjct: 665 AFLIRLLRDLIDKQTWTDEGSVS--ERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESN 722
Query: 562 TTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNI 621
LP D+ A + V A G++ L Y+ + S EK++I A C N
Sbjct: 723 GNLSLPVDVTLAVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN- 774
Query: 622 VLEVLNFLL-----SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG 671
E L +LL ++++Q+ + +++ GR AW++L+ NW+ + + + G
Sbjct: 775 -KEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELG 831
Query: 672 -FLITRFISSIVSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
I + + F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 832 SSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 887
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 357 bits (917), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 241/737 (32%), Positives = 376/737 (51%), Gaps = 77/737 (10%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMS 66
Q DARR FPC D PA KA F IT+ + + A+SNMP +V K V +Q++P MS
Sbjct: 101 QATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKVVEFQDTPRMS 159
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
TYL+ V IG F Y + D + + K + K+ L++A K++E Y+ YF +PY+L
Sbjct: 160 TYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYAL 216
Query: 127 PKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVVAHELAHQWFG 184
PK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ ATV+AHE+AHQWFG
Sbjct: 217 PKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSATVIAHEIAHQWFG 273
Query: 185 NLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRLDGLAESHPIE 243
+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR D L +HPIE
Sbjct: 274 DLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIE 333
Query: 244 VEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWA 303
V+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ + NA+ DLW
Sbjct: 334 VDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWT 393
Query: 304 ALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQWIVPITLC 363
A+E+ SG+PV ++M W K GYPVI G +G+W VP+ +
Sbjct: 394 AIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-EGRWPVPVNI- 451
Query: 364 CGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK-DLAA 422
K D + + LL S E D G IK+N + GFYRV YD +
Sbjct: 452 -------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYRVLYDDATFSD 495
Query: 423 RLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITIS 482
+G+ + LS DR G++DD FA ++ + + ++ ++ ++ V++ ++
Sbjct: 496 VMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVG-- 550
Query: 483 YKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLDALLRGEIFTA 537
++YL+ F + A ++ + + + +L L G + +
Sbjct: 551 -------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLKIAL-GRV-SR 594
Query: 538 LALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVY 597
L ++ + E SK F F + P++R + +A + D G LL +
Sbjct: 595 LYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDLKG---LLEKF 643
Query: 598 RETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSIE---GRETAW 654
R D +++ RI+S+ + V + +E++ QD + + ++E GRE
Sbjct: 644 RSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGRE--- 700
Query: 655 KWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSRCKPYIARTLR 711
++ N D I + F R S V P + + E+ + I+ L
Sbjct: 701 -FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNIGSKNISMGLA 758
Query: 712 QSIERVQINAKWVESIR 728
+ IE + +N K VE IR
Sbjct: 759 KGIEMLAVNRKLVERIR 775
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 239/737 (32%), Positives = 375/737 (50%), Gaps = 77/737 (10%)
Query: 7 QPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMS 66
+ DARR FPC D PA KA F IT+ + + A+SNMP +V K V +Q++P MS
Sbjct: 101 EATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRIEV-SERKVVEFQDTPRMS 159
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
TYL+ V IG F Y + D + + K + K+ L++A K++E Y+ YF +PY+L
Sbjct: 160 TYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPYAL 216
Query: 127 PKLDMIAIPDFAAGAMENYGLVTYRETALLYDD--QHSAAANKQRVATVVAHELAHQWFG 184
PK+ +I++P+F AGAMEN+G +T+RE +Y D ++SA K+ A V+AHE+AHQWFG
Sbjct: 217 PKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNSANVIAHEIAHQWFG 273
Query: 185 NLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRLDGLAESHPIE 243
+LVTM+WW LWLNE FAT++SY D+LFPEW W F T G LR D L +HPIE
Sbjct: 274 DLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIE 333
Query: 244 VEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWA 303
V+V EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ + NA+ DLW
Sbjct: 334 VDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWT 393
Query: 304 ALEEGSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQWIVPITLC 363
A+E+ SG+PV ++M W K GYPVI G +G+W VP+ +
Sbjct: 394 AIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-EGRWPVPVNI- 451
Query: 364 CGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK-DLAA 422
K D + + LL S E D G IK+N + GFYRV YD +
Sbjct: 452 -------------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYRVLYDDATFSD 495
Query: 423 RLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITIS 482
+G+ + LS DR G++DD FA ++ + + ++ ++ ++ V++ ++
Sbjct: 496 VMGH---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVG-- 550
Query: 483 YKIGRIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLDALLRGEIFTA 537
++YL+ F + A ++ + + + +L L G + +
Sbjct: 551 -------------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLKIAL-GRV-SR 594
Query: 538 LALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVY 597
L ++ + E SK F F + P++R + +A + D G LL +
Sbjct: 595 LYVMVDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDLKG---LLEKF 643
Query: 598 RETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSIE---GRETAW 654
R D +++ RI+S+ + V + +E++ QD + + ++E GRE
Sbjct: 644 RSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGRE--- 700
Query: 655 KWLKDNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSRCKPYIARTLR 711
++ N D I + F R S V P + + E+ + I+ L
Sbjct: 701 -FIFANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNIGSKNISMGLA 758
Query: 712 QSIERVQINAKWVESIR 728
+ IE + +N K VE IR
Sbjct: 759 KGIEMLAVNRKLVERIR 775
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 11/306 (3%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSEL--VALSNMPVIDE-KVDGNMKTVSYQESPIMSTY 68
RR D P A + +T+ E V LSN ++E ++ G + + P+ Y
Sbjct: 129 RRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCY 188
Query: 69 LVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVP 123
L AVV G Y+ +T +++ V+ + ++ ++AL K++ ++YF +
Sbjct: 189 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLE 248
Query: 124 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 183
Y L +L+++A+ DF GAMEN GL + +LL ++S + R+ TVV HE HQ+
Sbjct: 249 YDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYT 308
Query: 184 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL-DGLAESHPI 242
GN VT+ W L L EG L ++ + +D L D SHPI
Sbjct: 309 GNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI 368
Query: 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLW 302
E ++ + Y KG+ V+RM LG E +++ YIKK + A ED
Sbjct: 369 RPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFN 426
Query: 303 AALEEG 308
A+E+
Sbjct: 427 YAMEQA 432
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 11/306 (3%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSEL--VALSNMPVIDE-KVDGNMKTVSYQESPIMSTY 68
RR D P A + +T+ E V LSN ++E ++ G + + P+ Y
Sbjct: 130 RRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCY 189
Query: 69 LVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVP 123
L AVV G Y+ +T +++ V+ + ++ ++AL K++ ++YF +
Sbjct: 190 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLE 249
Query: 124 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 183
Y L +L+++A+ DF GAMEN GL + +LL ++S + R+ TVV HE HQ+
Sbjct: 250 YDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYT 309
Query: 184 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL-DGLAESHPI 242
GN VT+ W L L EG L ++ + +D L D SHPI
Sbjct: 310 GNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI 369
Query: 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLW 302
E ++ + Y KG+ V+RM LG E +++ YIKK + A ED
Sbjct: 370 RPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFN 427
Query: 303 AALEEG 308
A+E+
Sbjct: 428 YAMEQA 433
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 11/306 (3%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSEL--VALSNMPVIDE-KVDGNMKTVSYQESPIMSTY 68
RR D P A + +T+ E V LSN ++E ++ G + + P+ Y
Sbjct: 130 RRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCY 189
Query: 69 LVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVP 123
L AVV G Y+ +T +++ V+ + ++ ++AL K++ ++YF +
Sbjct: 190 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLE 249
Query: 124 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 183
Y L +L+++A+ DF GAMEN GL + +LL ++S + R+ TVV HE HQ+
Sbjct: 250 YDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYT 309
Query: 184 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL-DGLAESHPI 242
GN VT+ W L L EG L ++ + +D L D SHPI
Sbjct: 310 GNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI 369
Query: 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLW 302
E ++ + Y KG+ V+RM LG E +++ YIKK + A ED
Sbjct: 370 RPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFN 427
Query: 303 AALEEG 308
A+E+
Sbjct: 428 YAMEQA 433
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 141/306 (46%), Gaps = 11/306 (3%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSEL--VALSNMPVIDE-KVDGNMKTVSYQESPIMSTY 68
RR D P A + +T+ E V LSN ++E ++ G + + P+ Y
Sbjct: 129 RRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCY 188
Query: 69 LVAVVIGLFD-----YVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVP 123
L AVV G Y+ +T +++ V+ + ++ ++AL K++ ++YF +
Sbjct: 189 LFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLE 248
Query: 124 YSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 183
Y L +L+++A+ DF GAMEN GL + +LL ++S + R+ TVV HE HQ+
Sbjct: 249 YDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYT 308
Query: 184 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL-DGLAESHPI 242
GN VT+ W L L EG L ++ + +D L D SHPI
Sbjct: 309 GNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI 368
Query: 243 EVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLW 302
E + + Y KG+ V+RM LG E +++ YIKK + A ED
Sbjct: 369 RPE--SYVSMANFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFN 426
Query: 303 AALEEG 308
A+E+
Sbjct: 427 YAMEQA 432
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 142 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 199
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 200 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 254
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 255 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 305
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 306 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 359
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 360 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 419
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 420 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 141 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 198
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 199 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 253
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 254 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 304
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 305 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 358
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 359 THPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 418
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 419 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 30/332 (9%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 141 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 198
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 199 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 253
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 254 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 304
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEV 244
LVT + W H WLNEG ++ LF E ++ + + E+HP
Sbjct: 305 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTK 364
Query: 245 EVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDL 301
V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D
Sbjct: 365 LVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDW 424
Query: 302 WAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
L + V+ L N+W G P I
Sbjct: 425 KDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 139 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 196
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 197 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 251
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 252 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 302
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 303 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 356
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 357 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 416
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 417 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 454
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 147 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 204
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 205 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 259
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 260 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 310
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 311 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 364
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 365 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 424
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 425 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 141 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 198
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 199 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 253
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AHE++H W GN
Sbjct: 254 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 304
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 305 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 358
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 359 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 418
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 419 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 142 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 199
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 200 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 254
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G M+N L T L A + ++ V+AHE++H W GN
Sbjct: 255 GQYDLLVLPPSFPYGGMQNPCLTFVTPTLL---------AGDKSLSNVIAHEISHSWTGN 305
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 306 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 359
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 360 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 419
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 420 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 12 RRCFPCWDEPACKATFKITLDVPSELVALSNMPVI-----DEKVDGNMKTVSYQESPIMS 66
R PC D P+ K T+ + VP ELVAL M I + D + K + + +
Sbjct: 147 RAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGETPDPEDPSRKIYKFIQKVPIP 204
Query: 67 TYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSL 126
YL+A+V+G + + G + V+ + + + + + L++ E PY
Sbjct: 205 CYLIALVVGALESRQI----GPRTLVWSEKEQVEKSAYEFSETESMLKI-AEDLGGPYVW 259
Query: 127 PKLDMIAIP-DFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185
+ D++ +P F G MEN L T L A + ++ V+AH+++H W GN
Sbjct: 260 GQYDLLVLPPSFPYGGMENPCLTFVTPTLL---------AGDKSLSNVIAHQISHSWTGN 310
Query: 186 LVTMEWWTHLWLNEGFATWVSYLAADSLFPE-------WKIWTQFLDECTEGLRLDGLAE 238
LVT + W H WLNEG ++ LF E W + + + E
Sbjct: 311 LVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS------VKTFGE 364
Query: 239 SHPIEVEVNHTGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSN 295
+HP V +ID + ++ Y KG +++ L+ LG E F L +Y++K++ +
Sbjct: 365 THPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS 424
Query: 296 AKTEDLWAALEEGSGEPVNKLM----NSWTKQKGYPVI 329
T+D L + V+ L N+W G P I
Sbjct: 425 ITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 13/320 (4%)
Query: 19 DEPACKATF--KITLDVPSELVALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIG 75
D P A F KI D LSN V +++ V +Q+ YL A+V G
Sbjct: 154 DRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAG 213
Query: 76 LFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDM 131
FD + D + + + +Y G ++ +A+ +++ +E F + Y L +
Sbjct: 214 DFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMI 273
Query: 132 IAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEW 191
+A+ F GAMEN GL + +L + + + V+ HE H W GN VT
Sbjct: 274 VAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRD 333
Query: 192 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHT 249
W L L EG + + L + GL+ D +HPI ++
Sbjct: 334 WFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--V 390
Query: 250 GEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS 309
E++ + Y KGA VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S
Sbjct: 391 IEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDAS 450
Query: 310 GEPVNKLMNSWTKQKGYPVI 329
++ W Q G P++
Sbjct: 451 NVDLSHF-RRWYSQSGTPIV 469
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 13/320 (4%)
Query: 19 DEPACKATF--KITLDVPSELVALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIG 75
D P A F KI D LSN V +++ V +Q+ YL A+V G
Sbjct: 154 DRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAG 213
Query: 76 LFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDM 131
FD + D + + + +Y G ++ +A+ +++ +E F + Y L +
Sbjct: 214 DFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMI 273
Query: 132 IAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEW 191
+A+ F GAMEN GL + +L + + + V+ HE H W GN VT
Sbjct: 274 VAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRD 333
Query: 192 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHT 249
W L L EG + + L + GL+ D +HPI ++
Sbjct: 334 WFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--V 390
Query: 250 GEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS 309
E++ + Y KGA VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S
Sbjct: 391 IEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDAS 450
Query: 310 GEPVNKLMNSWTKQKGYPVI 329
++ W Q G P++
Sbjct: 451 NVDLSHF-RRWYSQSGTPIV 469
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 13/320 (4%)
Query: 19 DEPACKATF--KITLDVPSELVALSN-MPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIG 75
D P A F KI D LSN V +++ V +Q+ YL A+V G
Sbjct: 133 DRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAG 192
Query: 76 LFDYVED----HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDM 131
FD + D + + + +Y G ++ +A+ +++ +E F + Y L +
Sbjct: 193 DFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMI 252
Query: 132 IAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEW 191
+A+ F GAMEN GL + +L + + + V+ HE H W GN VT
Sbjct: 253 VAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRD 312
Query: 192 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL--DGLAESHPIEVEVNHT 249
W L L EG + + L + GL+ D +HPI ++
Sbjct: 313 WFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNV-RTMRGLQFAEDASPMAHPIRPDM--V 369
Query: 250 GEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS 309
E++ + Y KGA VIRM+ LG E FQ+ + Y +++ S A +D A+E+ S
Sbjct: 370 IEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDAS 429
Query: 310 GEPVNKLMNSWTKQKGYPVI 329
++ W Q G P++
Sbjct: 430 NVDLSHF-RRWYSQSGTPIV 448
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 38/302 (12%)
Query: 11 ARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLV 70
AR FPC+D P+ K+TF +++ P +V S + + D D N+ Q+ PI YL+
Sbjct: 151 ARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE-QKVPI-PAYLI 207
Query: 71 AVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPK 128
+ G D +S I R VY + + ++ V+ E Y
Sbjct: 208 GIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEYEWGT 261
Query: 129 LD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 187
D ++ + + G ME+ + T L +D + V+AHELAH W GNLV
Sbjct: 262 YDILVNVDSYPYGGMESPNMTFATPTLLAHDRSN---------IDVIAHELAHSWSGNLV 312
Query: 188 TMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDECTEGLRLDGLA 237
T W H WLNEG+ ++ ++ E W +D + R L
Sbjct: 313 TNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLV 372
Query: 238 ESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLASYIKKYACSNA 296
++ +N + D+ F + Y KG +++ L+ LG + F + Y KK+A +
Sbjct: 373 QN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSL 426
Query: 297 KT 298
T
Sbjct: 427 DT 428
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 38/302 (12%)
Query: 11 ARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLV 70
AR FPC+D P+ K+TF +++ P +V S + + D D N+ Q+ PI YL+
Sbjct: 151 ARSLFPCFDTPSVKSTFTASIESPLPVV-FSGIRIEDTSKDTNIYRFE-QKVPI-PAYLI 207
Query: 71 AVVIGLFDYVEDHTSDGIKVR--VYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPK 128
+ G D +S I R VY + + ++ V+ E Y
Sbjct: 208 GIASG------DLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEYEWGT 261
Query: 129 LD-MIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLV 187
D ++ + + G ME+ + T + +D + V+AHELAH W GNLV
Sbjct: 262 YDILVNVDSYPYGGMESPNMTFATPTLIAHDRSN---------IDVIAHELAHSWSGNLV 312
Query: 188 TMEWWTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDECTEGLRLDGLA 237
T W H WLNEG+ ++ ++ E W +D + R L
Sbjct: 313 TNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLV 372
Query: 238 ESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLASYIKKYACSNA 296
++ +N + D+ F + Y KG +++ L+ LG + F + Y KK+A +
Sbjct: 373 QN------LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSL 426
Query: 297 KT 298
T
Sbjct: 427 DT 428
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 137/335 (40%), Gaps = 33/335 (9%)
Query: 5 KGQPPDARRCFPCWDEPACKATFKITLDVPSELVAL---SNMPVIDEKVDGNMKTVSYQE 61
+ Q AR P D P+ + T+ + +L+A+ +N P + DG+ Q
Sbjct: 144 QNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTER--DGDYFFSMPQA 201
Query: 62 SPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFA 121
P YL+A+ +G ++ GI Y + + K ++Y +Y
Sbjct: 202 IP---PYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYGKYRW 258
Query: 122 VPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 181
Y L ++ P F G MEN L T + A + + ++AHELAH
Sbjct: 259 GRYDL----LMLPPSFPFGGMENPRLSFITPTVV---------AGDKSLVNLIAHELAHS 305
Query: 182 WFGNLVTMEWWTHLWLNEGFATWVSYLAADSLF-PEWKIWTQFL---DECTEGLRLDGLA 237
W GNLVT E W LWLNEGF ++V +++F + + Q L D E L LD
Sbjct: 306 WSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASD 365
Query: 238 ESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAK 297
I+++ + D+ F + Y KG + L+ G E F + Y +A +
Sbjct: 366 TQLYIDLK---GRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLG 422
Query: 298 TEDLWAALEEGSGEPVNKL-----MNSWTKQKGYP 327
T++ L+ + + +N W + G P
Sbjct: 423 TDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 140/339 (41%), Gaps = 27/339 (7%)
Query: 7 QPPDARRCFPCWDEPACKATFKITL--DVPSELVALSNMPVID--EKVDGNMKTVSYQES 62
+P R+ D P + F T+ D V LSN ID E DG V +++
Sbjct: 117 EPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGR-HWVKWEDP 175
Query: 63 PIMSTYLVAVVIGLFDYVEDH--TSDGIKVRVYCQVGKANQGKFALNV-AVKTLELYKE- 118
+YL A+V G ED+ T G V++ +A++ K V ++K + E
Sbjct: 176 FSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWDET 235
Query: 119 YFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 178
F + Y L ++A+ DF GA EN GL + +L D + + + + + +VV HE
Sbjct: 236 RFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEY 295
Query: 179 AHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRL----- 233
H W GN VT W L L EG + D F + E +RL
Sbjct: 296 FHNWTGNRVTCRDWFQLSLKEGLTVF-----RDQEFSGDRASRAV--RRIENIRLLRQHQ 348
Query: 234 ---DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKK 290
D +HP+ E + + Y KGA V+R LG E FQ+ Y ++
Sbjct: 349 FPEDAGPTAHPVRPASYE--EXNNFYTXTVYEKGAEVVRXYHTLLGEEGFQKGXKLYFQR 406
Query: 291 YACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 329
+ +D AA + +G +++ W Q G PV+
Sbjct: 407 HDGQAVTCDDFRAAXADANGINLDQFA-LWYSQAGTPVL 444
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%)
Query: 349 GSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 407
G+P G W VP+T D+ FLL K+D + E + WIK NV
Sbjct: 27 GAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVE-----------WIKFNVG 75
Query: 408 QTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMAS 465
G+Y V Y+ D L ++ +S DR ++++ F L + ++ L L
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLY 135
Query: 466 YSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 521
ETE + L+ LI + YK+ + E+ K F I L ++ +K W +
Sbjct: 136 LKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG 192
Query: 522 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 581
S + +LR ++ + ++ + A F + LP D+ A +
Sbjct: 193 SVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA----- 245
Query: 582 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRS 636
V A G++ L Y+ + S EK++I A C N E L +LL ++++
Sbjct: 246 VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQNK--EKLQWLLDESFKGDKIKT 301
Query: 637 QDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 690
Q+ + +++ GR AW++L+ NW+ + + + G I + + F++ +
Sbjct: 302 QE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTR 359
Query: 691 VREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 725
+ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 360 LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 395
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 597 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 650
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 118 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGE 177
Query: 651 ETAW 654
+ AW
Sbjct: 178 QQAW 181
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 597 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 650
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166
Query: 651 ETAW 654
+ AW
Sbjct: 167 QQAW 170
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 597 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 650
Y E D S +IL ++ C + +V L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGD 159
Query: 651 ETAW 654
+ AW
Sbjct: 160 QQAW 163
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 82 DHTSDGIKVRVYCQVGKANQGKFALNVAV--KTLELYKEYFAVPYSLPKLDMIAIPDFAA 139
+ SD IKVRV+ V N+ LN+A+ L+++ K D+I + +
Sbjct: 23 NQNSDKIKVRVHQMVNHINEMYRPLNIAISLNRLQIWS----------KKDLITVKSASN 72
Query: 140 GAMENYGLVTYRETALLYDDQHSAA 164
+E++G +RET LL + A
Sbjct: 73 VTLESFG--NWRETVLLKQQNNDCA 95
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 597 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 650
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 651 ETAW 654
+ AW
Sbjct: 160 QQAW 163
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 597 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 650
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 651 ETAW 654
+ AW
Sbjct: 160 QQAW 163
>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
Length = 132
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 309 SGEPVNKLMNSWTKQKGYPVI 329
+GE V+KL N WTKQK + +I
Sbjct: 82 TGEDVDKLFNEWTKQKSHQII 102
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 208 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 261
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 236 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 289
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 208 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 261
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 235 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 288
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 634 VRSQDAVYGLAVSIEGR------ETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFAS 687
+R Q+ + G +++ E R E + KWL+D D ++K G F I+ S
Sbjct: 66 IRDQELIVG-SLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISE---------ES 115
Query: 688 YEKVREVEEFFSSRCKPYIARTLRQSIERVQIN 720
EK+++V E+++ + +A + R +N
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,549,700
Number of Sequences: 62578
Number of extensions: 866884
Number of successful extensions: 2318
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2179
Number of HSP's gapped (non-prelim): 53
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)