Query 004561
Match_columns 745
No_of_seqs 329 out of 2289
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 9E-138 2E-142 1208.0 70.2 716 4-741 157-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 6E-117 1E-121 1036.1 73.5 688 4-725 122-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 4.5E-86 9.7E-91 773.8 59.1 703 3-727 137-856 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 1.2E-74 2.7E-79 667.7 62.6 602 4-632 110-766 (863)
5 PRK14015 pepN aminopeptidase N 100.0 4.1E-74 8.9E-79 665.5 64.5 605 4-632 123-776 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.5E-64 5.4E-69 568.1 27.2 312 4-334 128-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 5.2E-57 1.1E-61 494.8 23.3 261 4-264 128-390 (390)
8 PF11838 ERAP1_C: ERAP1-like C 100.0 5.8E-52 1.3E-56 443.4 31.3 313 401-718 1-324 (324)
9 KOG1047 Bifunctional leukotrie 100.0 4E-48 8.6E-53 401.8 17.6 313 4-332 133-460 (613)
10 KOG1932 TATA binding protein a 100.0 4.4E-28 9.5E-33 270.2 31.4 304 8-333 182-505 (1180)
11 COG3975 Predicted protease wit 99.5 1.8E-12 3.9E-17 136.6 20.2 252 87-344 167-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 5.4E-11 1.2E-15 108.3 7.1 105 169-287 24-128 (128)
13 PF05299 Peptidase_M61: M61 gl 97.8 9.2E-06 2E-10 71.4 2.5 43 170-212 4-57 (122)
14 PF10460 Peptidase_M30: Peptid 97.8 0.0011 2.5E-08 69.5 18.0 222 85-324 16-285 (366)
15 PF04450 BSP: Peptidase of pla 96.4 0.052 1.1E-06 53.0 12.7 171 105-319 26-204 (205)
16 PF11940 DUF3458: Domain of un 96.4 1.2 2.5E-05 47.9 24.0 303 337-671 6-344 (367)
17 PF07607 DUF1570: Protein of u 95.9 0.0054 1.2E-07 54.7 2.7 38 172-210 3-43 (128)
18 PF10026 DUF2268: Predicted Zn 92.9 0.47 1E-05 46.3 8.5 100 108-214 4-113 (195)
19 smart00638 LPD_N Lipoprotein N 92.8 2.8 6E-05 48.6 16.0 194 422-632 360-560 (574)
20 PF10023 DUF2265: Predicted am 92.2 0.6 1.3E-05 48.7 8.4 116 92-213 38-202 (337)
21 PRK04860 hypothetical protein; 89.1 0.98 2.1E-05 42.2 6.1 71 104-183 4-76 (160)
22 COG4324 Predicted aminopeptida 87.4 0.64 1.4E-05 45.8 3.8 41 167-213 194-234 (376)
23 PF01863 DUF45: Protein of unk 85.4 4.9 0.00011 39.4 9.2 93 103-222 108-200 (205)
24 smart00731 SprT SprT homologue 85.1 1 2.2E-05 41.6 3.9 67 111-184 5-73 (146)
25 PF01347 Vitellogenin_N: Lipop 84.4 15 0.00032 43.0 14.1 97 529-631 505-603 (618)
26 PF03272 Enhancin: Viral enhan 83.0 39 0.00085 40.3 16.4 128 173-320 239-377 (775)
27 PF13646 HEAT_2: HEAT repeats; 77.2 5.1 0.00011 32.9 5.1 75 528-614 14-88 (88)
28 PF12725 DUF3810: Protein of u 77.1 2.6 5.7E-05 44.4 4.0 31 170-212 196-226 (318)
29 PF01447 Peptidase_M4: Thermol 73.5 5 0.00011 37.2 4.4 74 100-181 67-146 (150)
30 PF12315 DUF3633: Protein of u 67.8 8.8 0.00019 37.1 4.7 41 170-212 93-133 (212)
31 PRK09687 putative lyase; Provi 67.1 1.6E+02 0.0035 30.4 16.6 90 529-629 143-232 (280)
32 PRK05457 heat shock protein Ht 62.5 13 0.00028 38.6 5.3 69 109-186 79-150 (284)
33 COG2719 SpoVR Uncharacterized 58.2 65 0.0014 34.8 9.4 31 196-226 269-299 (495)
34 PF14675 FANCI_S1: FANCI solen 57.2 42 0.00092 33.3 7.5 118 437-556 4-122 (223)
35 PRK03072 heat shock protein Ht 57.1 18 0.0004 37.6 5.3 69 108-185 71-142 (288)
36 COG3227 LasB Zinc metalloprote 57.0 8.9 0.00019 41.6 2.9 109 96-212 265-380 (507)
37 PF01435 Peptidase_M48: Peptid 56.2 15 0.00033 36.4 4.5 70 111-189 35-108 (226)
38 COG1451 Predicted metal-depend 56.1 68 0.0015 31.9 8.8 93 103-222 119-211 (223)
39 COG4783 Putative Zn-dependent 55.8 11 0.00023 41.3 3.3 53 125-182 90-142 (484)
40 PRK04897 heat shock protein Ht 54.5 22 0.00047 37.2 5.4 69 108-185 81-152 (298)
41 PRK03001 M48 family peptidase; 53.7 22 0.00048 36.9 5.3 69 108-185 68-139 (283)
42 PF10263 SprT-like: SprT-like 53.4 22 0.00048 33.1 4.8 18 167-184 57-74 (157)
43 PF06114 DUF955: Domain of unk 52.3 13 0.00028 32.3 2.9 18 170-187 42-59 (122)
44 PRK04351 hypothetical protein; 52.0 14 0.0003 34.1 3.0 15 167-181 58-72 (149)
45 PRK03982 heat shock protein Ht 50.7 35 0.00075 35.6 6.2 68 109-185 70-140 (288)
46 PRK01345 heat shock protein Ht 50.4 27 0.00059 36.8 5.4 69 109-186 69-140 (317)
47 COG0501 HtpX Zn-dependent prot 50.0 28 0.0006 36.4 5.4 67 114-188 106-175 (302)
48 PRK02391 heat shock protein Ht 49.3 31 0.00067 36.0 5.5 69 109-186 78-149 (296)
49 cd04269 ZnMc_adamalysin_II_lik 47.1 58 0.0013 31.5 6.8 14 169-182 130-143 (194)
50 PF12069 DUF3549: Protein of u 45.6 4E+02 0.0087 28.3 13.1 101 532-643 170-271 (340)
51 PHA02456 zinc metallopeptidase 43.7 14 0.00031 31.4 1.6 14 169-182 78-91 (141)
52 PF13934 ELYS: Nuclear pore co 43.4 3.5E+02 0.0075 27.0 12.0 94 565-664 74-170 (226)
53 PRK02870 heat shock protein Ht 42.9 51 0.0011 35.1 6.0 64 110-181 118-184 (336)
54 PF08325 WLM: WLM domain; Int 42.6 17 0.00037 35.0 2.2 21 165-185 77-97 (186)
55 PF13574 Reprolysin_2: Metallo 41.9 17 0.00036 34.6 2.0 13 170-182 111-123 (173)
56 PF13646 HEAT_2: HEAT repeats; 39.8 52 0.0011 26.6 4.5 62 567-632 13-74 (88)
57 KOG2062 26S proteasome regulat 39.5 1.1E+02 0.0023 35.6 7.9 127 523-657 495-629 (929)
58 PRK01265 heat shock protein Ht 39.3 61 0.0013 34.3 5.8 66 109-184 85-154 (324)
59 PLN03218 maturation of RBCL 1; 39.1 8.9E+02 0.019 30.4 17.4 27 606-632 652-678 (1060)
60 PRK09687 putative lyase; Provi 38.7 4.6E+02 0.01 27.1 17.0 156 528-704 105-267 (280)
61 COG0362 Gnd 6-phosphogluconate 38.4 1.9E+02 0.0042 31.2 9.1 118 435-573 312-444 (473)
62 PF05476 PET122: PET122; Inte 36.1 4.7E+02 0.01 26.4 15.0 223 500-740 18-263 (267)
63 COG3091 SprT Zn-dependent meta 35.6 49 0.0011 30.3 3.8 24 108-131 6-29 (156)
64 PF08014 DUF1704: Domain of un 35.2 1.2E+02 0.0026 32.4 7.4 83 112-209 118-213 (349)
65 cd04279 ZnMc_MMP_like_1 Zinc-d 34.2 1.4E+02 0.003 27.6 6.9 36 88-123 2-40 (156)
66 KOG2661 Peptidase family M48 [ 33.5 28 0.0006 36.0 2.1 20 167-186 272-291 (424)
67 KOG1991 Nuclear transport rece 33.1 8.2E+02 0.018 29.8 13.9 136 434-572 102-252 (1010)
68 PF01431 Peptidase_M13: Peptid 31.5 39 0.00084 33.1 2.8 29 156-184 22-50 (206)
69 PF12174 RST: RCD1-SRO-TAF4 (R 29.6 1.1E+02 0.0024 24.2 4.5 47 264-311 11-57 (70)
70 PF01421 Reprolysin: Reprolysi 28.8 66 0.0014 31.2 3.9 14 168-181 129-142 (199)
71 PF00046 Homeobox: Homeobox do 28.7 2E+02 0.0043 21.1 5.7 45 686-740 7-51 (57)
72 cd04272 ZnMc_salivary_gland_MP 28.6 1E+02 0.0022 30.5 5.3 13 170-182 145-157 (220)
73 PF03715 Noc2: Noc2p family; 27.5 1.5E+02 0.0032 31.1 6.3 50 692-741 228-285 (299)
74 smart00638 LPD_N Lipoprotein N 27.3 8.1E+02 0.018 28.2 13.2 66 528-600 340-405 (574)
75 PF10805 DUF2730: Protein of u 26.2 3.4E+02 0.0074 23.4 7.4 42 653-696 1-42 (106)
76 KOG3607 Meltrins, fertilins an 25.9 1.4E+02 0.0031 35.2 6.5 88 89-181 242-334 (716)
77 cd06460 M32_Taq Peptidase fami 25.5 6.4E+02 0.014 27.6 10.9 54 258-314 317-383 (396)
78 PF09768 Peptidase_M76: Peptid 25.0 1.8E+02 0.0039 27.6 5.8 17 167-183 68-84 (173)
79 PF13699 DUF4157: Domain of un 24.8 44 0.00096 27.1 1.5 64 111-182 5-73 (79)
80 KOG1077 Vesicle coat complex A 24.1 1.2E+03 0.026 27.5 12.6 48 597-644 412-467 (938)
81 PF13688 Reprolysin_5: Metallo 23.4 48 0.001 32.0 1.8 14 169-182 141-154 (196)
82 PF05596 Taeniidae_ag: Taeniid 22.2 3.1E+02 0.0066 21.3 5.5 49 687-739 12-60 (64)
83 KOG2653 6-phosphogluconate deh 22.0 3.5E+02 0.0077 28.8 7.5 116 437-573 319-449 (487)
84 COG2856 Predicted Zn peptidase 21.4 1.3E+02 0.0029 29.6 4.4 39 170-208 72-115 (213)
85 KOG1967 DNA repair/transcripti 21.4 1.5E+03 0.033 27.5 16.5 198 441-670 105-308 (1030)
86 PF09836 DUF2063: Uncharacteri 20.5 57 0.0012 27.3 1.4 30 271-300 55-84 (94)
87 COG3590 PepO Predicted metallo 20.2 23 0.00049 39.5 -1.3 36 147-182 461-499 (654)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-138 Score=1208.00 Aligned_cols=716 Identities=48% Similarity=0.800 Sum_probs=671.2
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccce-eecCCeEEEEEEecCCCCccEEEEEEEcceEEEe
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED 82 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~ 82 (745)
-||||++||++|||||||++||+|+|+|.||++++++||||+..+ ..++++++++|++||+||||++||+||+|++++.
T Consensus 157 Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~ 236 (882)
T KOG1046|consen 157 TQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVET 236 (882)
T ss_pred eccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeecccccee
Confidence 489999999999999999999999999999999999999999876 4455599999999999999999999999999998
Q ss_pred eecCCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCC
Q 004561 83 HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS 162 (745)
Q Consensus 83 ~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~ 162 (745)
.+.+|+++|+|++|+...+.++|++.+.++|++|+++||+|||+||+|+|++|+|..|||||||||||+|..+|+++..+
T Consensus 237 ~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~s 316 (882)
T KOG1046|consen 237 ITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTS 316 (882)
T ss_pred ecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHH-HHhhhhccCCCCC
Q 004561 163 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHP 241 (745)
Q Consensus 163 ~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p 241 (745)
+..++++++.+||||+|||||||+|||+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||
T Consensus 317 s~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shp 396 (882)
T KOG1046|consen 317 SSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHP 396 (882)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999888776 5799999999999
Q ss_pred eeeecCCcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHHHHHHHhh
Q 004561 242 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWT 321 (745)
Q Consensus 242 ~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~W~ 321 (745)
+..++.++.+|...||.++|.||++|+|||+.++|++.|++||+.||++|+|+|++++|||++|+...+.+++++|+.|+
T Consensus 397 i~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt 476 (882)
T KOG1046|consen 397 ISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWT 476 (882)
T ss_pred eeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cCCCcceEEEEEeCCEEEEEEEeecCCCC--CCCCeeEEEEEEEEccccceeeEEeeccceEEEecccccccccCCCCCC
Q 004561 322 KQKGYPVISVKVKEEKLELEQSQFLSSGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNG 399 (745)
Q Consensus 322 ~~~g~P~~~v~~~~~~~~l~Q~rf~~~~~--~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 399 (745)
.|+|||+|+|.+++++++++|+||...+. ....+|+||++|.+.+.+.....|+..++..+.++. ++
T Consensus 477 ~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~-- 545 (882)
T KOG1046|consen 477 KQMGYPVVTVERNGDSLTLTQERFLSDPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD-- 545 (882)
T ss_pred cCCCCceEEEEecCCEEEEehhhhccCCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--
Confidence 99999999999999999999999988764 334599999999987665545678888877777753 33
Q ss_pred CceEecCCCeeeEEEEcCHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCcHHHHHHH
Q 004561 400 GWIKLNVNQTGFYRVKYDKDLAARLGYAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNL 478 (745)
Q Consensus 400 ~wi~~N~~~~gyyRV~Yd~~~~~~l~~~L~~-~~i~~~~r~~li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~~ 478 (745)
+||++|.++.|||||+||+++|+.|+.+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+
T Consensus 546 ~wi~~N~~~~g~yRV~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~ 625 (882)
T KOG1046|consen 546 QWIKVNLEQTGYYRVNYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAA 625 (882)
T ss_pred eEEEEeCCcceEEEEEeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHH
Confidence 6999999999999999999999999999976 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 004561 479 ITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 558 (745)
Q Consensus 479 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~ 558 (745)
...|..+.. +.. .+.+..++.|+.+++.+.++++||.....++ ....+|..++..||..|+++|++.|..+|..|+
T Consensus 626 ~~~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~ 701 (882)
T KOG1046|consen 626 IRSLYKLHS-LED--TEIYSKFKEFVKKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWL 701 (882)
T ss_pred HHHHHHHhh-ccc--chHHHHHHHHHHHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 999999888 444 5689999999999999999999998755443 778999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhc-CcCCcc
Q 004561 559 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQ 637 (745)
Q Consensus 559 ~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~-~~i~~q 637 (745)
.. ++.+|+++|.+|||+++. +|+++.|++++++|+++.+..||..++.||+|+++++.++++|++.++ ..++.|
T Consensus 702 ~~--~~~ip~~lr~~vy~~~~~---~g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~q 776 (882)
T KOG1046|consen 702 AG--TNPIPPDLREVVYCTAVQ---FGTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQ 776 (882)
T ss_pred hc--CCCCChhhhhhhhhHHHH---hcCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccch
Confidence 86 678999999988876655 899999999999999999999999999999999999999999999888 479999
Q ss_pred cchheee-eccc--cHHHHHHHHHHhHHHHHHHhCCCcchhHHHHHhhccCCCHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 004561 638 DAVYGLA-VSIE--GRETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSI 714 (745)
Q Consensus 638 d~~~~~~-v~~~--g~~~~w~fl~~n~~~i~~~~~~~~~l~~ii~~~~~~~~t~~~~~e~~~F~~~~~~~~~~~~~~~~l 714 (745)
|...++. ++.+ |.+.+|+|+.+||+.+.+++++.+.+..++..+++.+.+..+++++++||...+..+..+++++++
T Consensus 777 d~~~~~~~~~~~~~g~~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l 856 (882)
T KOG1046|consen 777 DVLTLLQGISGNPRGVELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQAL 856 (882)
T ss_pred hHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 9999998 7776 999999999999999999999668899999999999999999999999999987666689999999
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHhh
Q 004561 715 ERVQINAKWVESIRNEGHLAEAVKELA 741 (745)
Q Consensus 715 e~i~~ni~W~~~~~~~~~i~~wl~~~~ 741 (745)
|.++.|+.|.+++.+. +.+||.+..
T Consensus 857 e~~~~ni~W~~~~~~~--l~~~l~~~~ 881 (882)
T KOG1046|consen 857 ETVKANIQWVERNEEN--LTQWLLEAL 881 (882)
T ss_pred HHHHhhhhHHHhhHHH--HHHHHHHhc
Confidence 9999999999999888 999998753
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=5.5e-117 Score=1036.05 Aligned_cols=688 Identities=23% Similarity=0.350 Sum_probs=584.0
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccceeecCCeEEEEEEecCCCCccEEEEEEEcceEEEee
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH 83 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~ 83 (745)
-||||++||+||||||||++||+|+++|++|++|+|+|||++.+....++.++++|..|||||||++||++|+|+.++.
T Consensus 122 Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~- 200 (831)
T TIGR02412 122 TQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD- 200 (831)
T ss_pred ECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-
Confidence 5899999999999999999999999999999999999999987765556678899999999999999999999999884
Q ss_pred ecCCeEEEEEEcCCccch--HHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCC
Q 004561 84 TSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQH 161 (745)
Q Consensus 84 ~~~~~~i~v~~~~~~~~~--~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~ 161 (745)
+.+|+++++|++|+..+. ++++++.++++|++|+++||+|||++|+|+|++|+|..|||||||+|+|+|. +++++.
T Consensus 201 ~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~- 278 (831)
T TIGR02412 201 ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE- 278 (831)
T ss_pred cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-
Confidence 457899999999987654 6789999999999999999999999999999999999999999999999999 555544
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHH-HHhhhhccCCCC
Q 004561 162 SAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESH 240 (745)
Q Consensus 162 ~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~ 240 (745)
.+...++.++.+|+||+|||||||+|||+||+|+|||||||+|++++++++.+|++..+..|..... .++..|+..++|
T Consensus 279 ~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~ 358 (831)
T TIGR02412 279 ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTH 358 (831)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCC
Confidence 3355677889999999999999999999999999999999999999999999999888888876544 668889999999
Q ss_pred CeeeecCCcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHHHHHHHh
Q 004561 241 PIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSW 320 (745)
Q Consensus 241 p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~W 320 (745)
|+..++.++.++...|+.++|.||+++|+||+..||+++|+++||.|+++|+|+|++++|||+++++++|.+++.||++|
T Consensus 359 Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W 438 (831)
T TIGR02412 359 PIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAW 438 (831)
T ss_pred CCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEEeC--CEEE-EEEEeecCCCCCCCCeeEEEEEEEEcccccee-----eEEeeccceEEEecccccccc
Q 004561 321 TKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGDGQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSI 392 (745)
Q Consensus 321 ~~~~g~P~~~v~~~~--~~~~-l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~-----~~~l~~~~~~~~l~~~~~~~~ 392 (745)
++++|+|+|+|+++. +.+. +.|.+ .+ ....|+|||.+....+.... .+++...... ++...
T Consensus 439 ~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 507 (831)
T TIGR02412 439 LETAGVNTLTPEITTDGGVVSALYPES---SG--PPRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV---- 507 (831)
T ss_pred HcCCCCceEEEEEEECCCeEEEEEEec---CC--CCCCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----
Confidence 999999999998753 4444 22221 11 12459999997654332111 1334332222 22110
Q ss_pred cCCCCCCCceEecCCCeeeEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHccCCCHHHHHHHH-HhcccCCc
Q 004561 393 SKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETE 471 (745)
Q Consensus 393 ~~~~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~~~L~~~~i~~~~r~~li~D~~~la~~g~~~~~~~l~l~-~~l~~E~~ 471 (745)
...++ +||++|.++.|||||+||+++|+.|..+|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|++
T Consensus 508 ~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~ 584 (831)
T TIGR02412 508 GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAALSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETD 584 (831)
T ss_pred CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHhhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc
Confidence 11234 7999999999999999999999999999853 33799999999999999999999999999965 89999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004561 472 YTVLSNLITISY-KIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEA 550 (745)
Q Consensus 472 ~~~w~~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a 550 (745)
+.||..++..+. .+...+.. ++.+..++.++.+++.+.... ++++.+..++ .+..++|..|+++|++.+
T Consensus 585 ~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 654 (831)
T TIGR02412 585 YAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAALACRSLRRA-------MESGPDFQLR-WLRALALTATDPDSLRRL 654 (831)
T ss_pred hHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHhc-------cCCCccHHHH-HHHHHHHhcCCHHHHHHH
Confidence 999999999999 88888754 567889999998888864422 2222333333 355589999999999999
Q ss_pred HHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 004561 551 SKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL 630 (745)
Q Consensus 551 ~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l 630 (745)
+++|+.++.+ ..||||+|..|||+++. ++..+|+.++++|++++++++|..++.||||++|++++++.+..++
T Consensus 655 ~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~ 727 (831)
T TIGR02412 655 LSLLDGKIKG---LALDPDLRWRIIARLAA----LGFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLV 727 (831)
T ss_pred HHHHhCCCCC---cccCHhHHHHHHHHHHh----cCCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 9999987654 36999999999986554 4678899999999999999999999999999999999997777766
Q ss_pred cC-cCCcccchheee-eccc-cHHHHHHHHHHhHHHHHHHhCC-CcchhHHHHHhhc--cCCCHHHHHHHHHHHhc--CC
Q 004561 631 SS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RC 702 (745)
Q Consensus 631 ~~-~i~~qd~~~~~~-v~~~-g~~~~w~fl~~n~~~i~~~~~~-~~~l~~ii~~~~~--~~~t~~~~~e~~~F~~~--~~ 702 (745)
.+ .++.||...++. ++.. +++++|+|+++||+.|.++++. +..+...+...+. .+++++.++++++||+. +.
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 807 (831)
T TIGR02412 728 TTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANLADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADA 807 (831)
T ss_pred CCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCC
Confidence 65 589999988888 7655 9999999999999999999975 4555655554444 88999999999999974 33
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 004561 703 KPYIARTLRQSIERVQINAKWVE 725 (745)
Q Consensus 703 ~~~~~~~~~~~le~i~~ni~W~~ 725 (745)
.++.+|.+.++++.++.|+++++
T Consensus 808 ~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 808 SPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred CHHHHHHHHHHHhHHHHHHHhhc
Confidence 46889999999999999998865
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-86 Score=773.77 Aligned_cols=703 Identities=30% Similarity=0.485 Sum_probs=580.4
Q ss_pred CcCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccceeec-CCeEEEEEEecCCCCccEEEEEEEcceEEE
Q 004561 3 EFKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVD-GNMKTVSYQESPIMSTYLVAVVIGLFDYVE 81 (745)
Q Consensus 3 ~~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~~-~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~ 81 (745)
--||||++||+||||+|+|+.||+|+++|..++++.++|||+....... +++++++|..++||||||+|+++|+|.+++
T Consensus 137 ~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~ 216 (859)
T COG0308 137 ITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFR 216 (859)
T ss_pred EeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeee
Confidence 3599999999999999999999999999999999999999999876433 458999999999999999999999998887
Q ss_pred eeec---CCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeeccccccc
Q 004561 82 DHTS---DGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYD 158 (745)
Q Consensus 82 ~~~~---~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~ 158 (745)
.... +++++++|++++....++++++.+.+.+++|+++||+|||+++ ++|++|+|..|||||||+++|++..++.+
T Consensus 217 ~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~ 295 (859)
T COG0308 217 DKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLAD 295 (859)
T ss_pred eeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeC
Confidence 5542 4799999999988899999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCc-hhHHHHHHHHHHHH-Hhhhhcc
Q 004561 159 DQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGL 236 (745)
Q Consensus 159 ~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~ 236 (745)
+..++...+++++.+|+||+|||||||+||++||+++|||||||+|++.+..+.+.| .|..+..+...... ++..|+.
T Consensus 296 ~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 375 (859)
T COG0308 296 PETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSL 375 (859)
T ss_pred cccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccc
Confidence 887888888999999999999999999999999999999999999999999999999 88888888765554 7888999
Q ss_pred CCCCCeeeecCCcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHHHH
Q 004561 237 AESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL 316 (745)
Q Consensus 237 ~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~~ 316 (745)
..+||+...+.++.++++.||.++|.||++|+|||+.++|++.|++||+.|+++|++++++++|||+++++++|.+++.+
T Consensus 376 ~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~ 455 (859)
T COG0308 376 PSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAF 455 (859)
T ss_pred cccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcceEEEEEeCC-EEEEEEEeecCCCCCCCCeeEEEEEEEEccccceeeEEeeccceEEEecccccccccCC
Q 004561 317 MNSWTKQKGYPVISVKVKEE-KLELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKE 395 (745)
Q Consensus 317 ~~~W~~~~g~P~~~v~~~~~-~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 395 (745)
|+.|++|+|+|++.|+..++ .++++|.||...+......|+||+.+.....+......+.....++.++... ..
T Consensus 456 ~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~ 530 (859)
T COG0308 456 FESWLSQAGYPVLTVSVRYDDFFKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IP 530 (859)
T ss_pred HHHHHhCCCCCceeeeeeccccEEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CC
Confidence 99999999999999998886 7899999998776334459999999987754422334445555566665421 11
Q ss_pred CCCCCceEecCCCeeeEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCcHHHH
Q 004561 396 GDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL 475 (745)
Q Consensus 396 ~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~~~L~~~~i~~~~r~~li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w 475 (745)
+- .-+++|....++|++.|+.+.+..++... ..++..+|+.++.|..++..+|..+...++..+....++....++
T Consensus 531 ~~--~~~~~~~~~~~~~~~~y~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 606 (859)
T COG0308 531 PF--PSLKVNDSAPVFYRVDYSDQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVS 606 (859)
T ss_pred cc--ceeeccCCccceEEEecCHHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHH
Confidence 22 46889999999999999999999887663 378899999999999999999999999999987766555455444
Q ss_pred HH--HHHHHHHHHHHHhccChHHHHHHHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004561 476 SN--LITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKR 553 (745)
Q Consensus 476 ~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~ 553 (745)
.. ....+..+..... .+ ..+.......+...+.++++....++. ........+ ..++-..+..++..+..+
T Consensus 607 ~~~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 679 (859)
T COG0308 607 LEQAFKSLLLALPSFAD---LE--KFIDPDAIDQLRDALVRLGAEAVADDL-LALYHIGAL-SQSLYEEDASLAALRALR 679 (859)
T ss_pred HHHHHHHHHHhcccchh---hh--hhcCHHHHHHHHHHHHHHHHHhhcchH-HHHHHhhhh-ccccccccHHHHHHHHHH
Confidence 33 3333333332211 11 345556666777777777776533322 222222222 566777788899999999
Q ss_pred HHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC-
Q 004561 554 FHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS- 632 (745)
Q Consensus 554 f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~~- 632 (745)
+..+-.. ...+++++|..+-..+..+ .+..+.+..+.+.|..+.....+..+..+.+....+..+.+.|..+..+
T Consensus 680 ~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (859)
T COG0308 680 NACLERL--EKQEDPELRSLVVKAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGD 755 (859)
T ss_pred HHHHhhc--ccccChhHHHHHHHHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCc
Confidence 8887543 3458899998766665442 3333468999999998888899999999999999999999999998876
Q ss_pred cCCcccchheee-ec--cccHHHHHHHHHHhHH---HHHHHhCCCcc-hhHHHHHhhccCCCHHHHHHHHHHHhcCCCch
Q 004561 633 EVRSQDAVYGLA-VS--IEGRETAWKWLKDNWD---HISKTWGSGFL-ITRFISSIVSPFASYEKVREVEEFFSSRCKPY 705 (745)
Q Consensus 633 ~i~~qd~~~~~~-v~--~~g~~~~w~fl~~n~~---~i~~~~~~~~~-l~~ii~~~~~~~~t~~~~~e~~~F~~~~~~~~ 705 (745)
.+..|+...+.. .. .++++++|.|...||+ .+....+++.. ...++. ....+.....+.++++|++....++
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~i~~~~~~~~~~~ 834 (859)
T COG0308 756 TVLEQDIGLMIHAAFEAPNPNEARWLYGTFAFENPALLHALDGSGYRFLGVIVL-ELNIFNPQLALRKIEEFLELKKLKA 834 (859)
T ss_pred chHHHHHHHHhhhhhhCCcchhhHHHHHHHhhhchhhhhhhccccccccceEEE-EeeccchhhHHHHHHHHhhhhcchh
Confidence 678888877776 32 3499999999999998 45555555432 233333 3467788888999999999876667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004561 706 IARTLRQSIERVQINAKWVESI 727 (745)
Q Consensus 706 ~~~~~~~~le~i~~ni~W~~~~ 727 (745)
..+.+.+++++|....++....
T Consensus 835 ~~~~~~~~l~~i~~~~~l~~~~ 856 (859)
T COG0308 835 LERLIREALETIAARERLSKDL 856 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 7889999999999888887653
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.2e-74 Score=667.66 Aligned_cols=602 Identities=22% Similarity=0.287 Sum_probs=422.0
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCC-C-eEEeCCcccce-eecCCeEEEEEEecCCCCccEEEEEEEcceEE
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSE-L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~-~-~~~sn~~~~~~-~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~ 80 (745)
-||||++||++|||||+|++||+|+++|++|++ | +++|||+++.+ ...+++++++|+.++|||+||+||+||+|+.+
T Consensus 110 TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~ 189 (863)
T TIGR02414 110 TQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVL 189 (863)
T ss_pred EEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEE
Confidence 589999999999999999999999999999996 7 56899987755 33567888999999999999999999999988
Q ss_pred Eee----ecCCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeeccccc
Q 004561 81 EDH----TSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALL 156 (745)
Q Consensus 81 ~~~----~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll 156 (745)
+.. ...++++++|++|+..+.++++++.+++++++||++||.|||++|+++|++|+|..||||||||++|++..++
T Consensus 190 ~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL 269 (863)
T TIGR02414 190 EDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVL 269 (863)
T ss_pred EEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEE
Confidence 743 2245899999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhH--HHHHHHHHHHHHhhhh
Q 004561 157 YDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRLD 234 (745)
Q Consensus 157 ~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d 234 (745)
.++...+...++.+..+|+||+|||||||+||++||+++|||||||+|++..+.....+... ........ ...+..|
T Consensus 270 ~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr-~~~f~~D 348 (863)
T TIGR02414 270 ADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR-AHQFPED 348 (863)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhccc
Confidence 99886666777789999999999999999999999999999999999999766555443211 11111000 1234557
Q ss_pred ccCCCCCeeeecCCcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHH
Q 004561 235 GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 314 (745)
Q Consensus 235 ~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~ 314 (745)
+...+||+.. .+..+++..|+.++|.||++||+||+..||++.|+++|+.|+++|++++++++|||+++++++|.+++
T Consensus 349 ~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~ 426 (863)
T TIGR02414 349 AGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLN 426 (863)
T ss_pred ccccCCCCCC--cchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHH
Confidence 7777888754 23456778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcceEEEEEeC----C--EEEEEEEeecCCCCCCCCeeEEEEEEEEc--cccc-----------eeeEEe
Q 004561 315 KLMNSWTKQKGYPVISVKVKE----E--KLELEQSQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLL 375 (745)
Q Consensus 315 ~~~~~W~~~~g~P~~~v~~~~----~--~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~l 375 (745)
+|+ +|++|+|+|+|+|++++ + +++++|.+....+......|+|||.+..- ++.. ...+.+
T Consensus 427 ~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l 505 (863)
T TIGR02414 427 QFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLEL 505 (863)
T ss_pred HHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEE
Confidence 985 89999999999999863 2 45666654322223334589999998652 2221 123567
Q ss_pred eccceEEEecccccccccCCCCCCCceEecCCCeeeEEEEcCH--HHHHHHHHHHHhcCCChhhHH---HHHH-HH-HHH
Q 004561 376 YNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK--DLAARLGYAIEMKQLSETDRF---GILD-DH-FAL 448 (745)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~--~~~~~l~~~L~~~~i~~~~r~---~li~-D~-~~l 448 (745)
+.+++++.++.+. .+ ..+-++.+.+.+-++.|+. +.+..|... + -+..+|. |-+. .. ..+
T Consensus 506 ~~~~~~f~f~~~~------~~---p~~sl~r~fsapv~l~~~~~~~~l~~l~~~---d-~d~~~r~~a~q~l~~~~~~~~ 572 (863)
T TIGR02414 506 TEAEQTFVFEGIA------EK---PVPSLLRGFSAPVNLEYPYSDEDLLLLLAH---D-SDPFNRWEAGQRLARRVILAN 572 (863)
T ss_pred ccCEEEEEEcCCC------CC---CeeeecCCCCceEEEeCCCCHHHHHHHHhh---C-CChhHHHHHHHHHHHHHHHHH
Confidence 7888888887532 12 3577888888888887653 434333322 1 1122232 1111 11 111
Q ss_pred H---HccC-C-CHHHHHHHHHhcccCC--cHHHHHHHHH--HHHHHHHHHhccChH--------HHHHHHHHHHHHhHHh
Q 004561 449 C---MARQ-Q-TLTSLLTLMASYSEET--EYTVLSNLIT--ISYKIGRIAADARPE--------LLDYLKQFFISLFQNS 511 (745)
Q Consensus 449 a---~~g~-~-~~~~~l~l~~~l~~E~--~~~~w~~~~~--~l~~i~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 511 (745)
+ ..|. + --..+++.+..+-.+. +...-..++. ....|...+..-+|+ ....+..-++..+..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~ 652 (863)
T TIGR02414 573 IARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRL 652 (863)
T ss_pred HHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1232 1 1345666666544333 3332222221 122232222211122 2222333334445556
Q ss_pred hhhcCCcc---CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHH
Q 004561 512 AEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRS 588 (745)
Q Consensus 512 ~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~ 588 (745)
|+++.-.. ...+..-.+.||..++.+++..+.++..+.|.+.|++-- .-.-|-+.+.+++..-....++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~--------~mtd~~~al~~l~~~~~~~~~~ 724 (863)
T TIGR02414 653 YDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAEIRNLALEQFKSAD--------NMTDRLAALSALVHFESDFRER 724 (863)
T ss_pred HHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC--------CHHHHHHHHHHHhcCCChhHHH
Confidence 66653211 112233457899999999999999999999998887531 1123344444444311111223
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC
Q 004561 589 GYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 632 (745)
Q Consensus 589 ~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~~ 632 (745)
..+..+++++.....-+|--.+.|.+ ..+..+.++-.+.-.+
T Consensus 725 ~l~~f~~~~~~~~lv~~kwf~~qa~~--~~~~~~~~v~~l~~h~ 766 (863)
T TIGR02414 725 ALAAFYQKWKDDPLVMDKWFALQATS--PRPDTLERVKALLQHP 766 (863)
T ss_pred HHHHHHHHHCCCchhHHHHHHHHhCC--CcccHHHHHHHHhcCC
Confidence 35566666666665556666666644 3455666665554333
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.1e-74 Score=665.51 Aligned_cols=605 Identities=21% Similarity=0.284 Sum_probs=419.2
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCC-C-eEEeCCccccee-ecCCeEEEEEEecCCCCccEEEEEEEcceEE
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSE-L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYV 80 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~-~-~~~sn~~~~~~~-~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~ 80 (745)
.||||++||+||||||+|++||+|+++|++|++ | +++|||++.++. ..+++++++|+.++|||+||+||+||+|+.+
T Consensus 123 TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~ 202 (875)
T PRK14015 123 TQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVL 202 (875)
T ss_pred EeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEE
Confidence 489999999999999999999999999999994 8 679999988764 4577889999999999999999999999988
Q ss_pred Eee--ec--CCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeeccccc
Q 004561 81 EDH--TS--DGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALL 156 (745)
Q Consensus 81 ~~~--~~--~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll 156 (745)
+.. +. +++++++|++|+..+.++++++.+++++++||++||.|||++|+++|++|+|..|||||||+++|++..++
T Consensus 203 ~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL 282 (875)
T PRK14015 203 EDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVL 282 (875)
T ss_pred EEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEe
Confidence 742 22 35999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCc-hhHHH-HHHHHHHHHHhhhh
Q 004561 157 YDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIW-TQFLDECTEGLRLD 234 (745)
Q Consensus 157 ~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~d 234 (745)
.++...+...+..+..+|+||+|||||||+||++||+++|||||||+|++..+.....+ ..... ..... ....+..|
T Consensus 283 ~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l-~~~~~~~D 361 (875)
T PRK14015 283 ADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVL-RAAQFAED 361 (875)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhhccccc
Confidence 88876666677788999999999999999999999999999999999998766554432 11111 11110 01124456
Q ss_pred ccCCCCCeeeecCCcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHH
Q 004561 235 GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 314 (745)
Q Consensus 235 ~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~ 314 (745)
+...+||+... +..+++..|+.++|.||+++||||+..||++.|+++|+.|+++|++++++++||++++++++|.++.
T Consensus 362 ~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~ 439 (875)
T PRK14015 362 AGPMAHPVRPD--SYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLS 439 (875)
T ss_pred ccccCCCCCCc--chhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHH
Confidence 66667776532 3356778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcceEEEEEeC----C--EEEEEEEeecCCCCCCCCeeEEEEEEEEcc--ccc----------eeeEEee
Q 004561 315 KLMNSWTKQKGYPVISVKVKE----E--KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLY 376 (745)
Q Consensus 315 ~~~~~W~~~~g~P~~~v~~~~----~--~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~l~ 376 (745)
+|+ +|++|+|+|+++|+++. + +++++|......+......|+|||.+..-+ +.. ...+.++
T Consensus 440 ~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~ 518 (875)
T PRK14015 440 QFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELT 518 (875)
T ss_pred HHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEc
Confidence 986 89999999999999863 3 356666543222333445899999986422 221 1236778
Q ss_pred ccceEEEecccccccccCCCCCCCceEecCCCeeeEEEEcCH--HHHHHHHHHHHhcCCChhhHHH-HHHHH-HHHHHc-
Q 004561 377 NKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK--DLAARLGYAIEMKQLSETDRFG-ILDDH-FALCMA- 451 (745)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~--~~~~~l~~~L~~~~i~~~~r~~-li~D~-~~la~~- 451 (745)
.+++++.++.+. .+ ..+.++.+.+.+-++.|+. +.+..|... ..+.+..-+-+| |.... ..++..
T Consensus 519 ~~~q~f~f~~~~------~~---p~~s~~r~fsapv~~~~~~~~~~l~~l~~~-d~d~~~r~~a~q~l~~~~~~~~~~~~ 588 (875)
T PRK14015 519 EAEQTFTFENVA------ER---PVPSLLRGFSAPVKLEYDYSDEDLLFLMAH-DSDPFNRWEAGQRLATRLLLANVARH 588 (875)
T ss_pred CCeeEEEEcCCC------CC---ceEEecCCCCCcEEEeCCCCHHHHHHHHhh-CCChhHHHHHHHHHHHHHHHHHHHhc
Confidence 888899887531 12 3478888888888887763 433333322 011122111111 11111 111111
Q ss_pred cC-CC-HHHHHHHHHhcccCC--cHHHHHHHHHH--HHHHHHHHhccChHH--------HHHHHHHHHHHhHHhhhhcCC
Q 004561 452 RQ-QT-LTSLLTLMASYSEET--EYTVLSNLITI--SYKIGRIAADARPEL--------LDYLKQFFISLFQNSAEKLGW 517 (745)
Q Consensus 452 g~-~~-~~~~l~l~~~l~~E~--~~~~w~~~~~~--l~~i~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~lg~ 517 (745)
|. +. -..+++.++.+-.+. +...-..++.. ...|...+..-+++. ...+..-+...+..+|+++--
T Consensus 589 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~ 668 (875)
T PRK14015 589 GQPLSLDEALIDAFRAVLLDESLDPAFAAELLTLPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQT 668 (875)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 11 234666665543332 33322222211 222322221111222 222223333344445555421
Q ss_pred cc---CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHH
Q 004561 518 DS---KPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLL 594 (745)
Q Consensus 518 ~~---~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~ 594 (745)
.. ...+..-.+.||..++.+++..+.++..+.|.+.|++-- .-.-|-+.+.++...-....++..+..+
T Consensus 669 ~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~--------~mtd~~~al~~l~~~~~~~~~~~l~~f~ 740 (875)
T PRK14015 669 DGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELAEAQFDQAD--------NMTDRLAALSALVNADLPERDEALADFY 740 (875)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHhhCC--------CHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 11 012234457899999999999998888888888887431 1123333444444321111223455666
Q ss_pred HHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC
Q 004561 595 RVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 632 (745)
Q Consensus 595 ~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~~ 632 (745)
++++.....-+|--.+.|.+-. ++.+.++-.+.-.+
T Consensus 741 ~~~~~~~lv~~kwf~~qa~~~~--~~~~~~v~~l~~hp 776 (875)
T PRK14015 741 DRWKDDPLVMDKWFALQATSPA--PDTLERVRALMQHP 776 (875)
T ss_pred HHhCCCchhhHHHHHHHhCCCC--cCHHHHHHHHhcCC
Confidence 6666666666676667665444 44555554444333
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.5e-64 Score=568.08 Aligned_cols=312 Identities=26% Similarity=0.449 Sum_probs=257.8
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccceeecCCeEEEEEEecCCCCccEEEEEEEcceEEEee
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH 83 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~ 83 (745)
.||||++||+||||||+|++||+|+++|++| ++|++||....+.. ++..+++|+.++|||+||+||+||+|+..+
T Consensus 128 Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~-- 202 (601)
T TIGR02411 128 SQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP-- 202 (601)
T ss_pred ECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc--
Confidence 5899999999999999999999999999999 88887665444332 345678999999999999999999998654
Q ss_pred ecCCeEEEEEEcCCccchHHHHHH-HHHHHHHHHHHHhCCCCCCCccCeeec-CCCCCccccccccceeecccccccCCC
Q 004561 84 TSDGIKVRVYCQVGKANQGKFALN-VAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQH 161 (745)
Q Consensus 84 ~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~~g~~yP~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~~ 161 (745)
.|.++++|++|+..+.+++++. .++++++++|+++| |||++|+|+|++ |+|++||||||| ++|.+..++.+..
T Consensus 203 --~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~- 277 (601)
T TIGR02411 203 --IGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR- 277 (601)
T ss_pred --cCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh-
Confidence 3678999999998888888888 99999999999876 999999999987 789999999999 5788877776532
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHH-HHHHHH-HHH-HHhhhhccCC
Q 004561 162 SAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKI-WTQFLD-ECT-EGLRLDGLAE 238 (745)
Q Consensus 162 ~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~d~~~~ 238 (745)
....+||||||||||||+||++||+|+|||||||+|++.+++++++|++.. ...+.. ... ..+ +.+..
T Consensus 278 -------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~ 348 (601)
T TIGR02411 278 -------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGE 348 (601)
T ss_pred -------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcC
Confidence 235799999999999999999999999999999999999999999998642 111111 111 112 22333
Q ss_pred CCCeeeecCCc--chhhcccccccccchhHHHHHHHHhhC-HHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhc-----C
Q 004561 239 SHPIEVEVNHT--GEIDEIFDAISYRKGASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----G 310 (745)
Q Consensus 239 ~~p~~~~~~~~--~~~~~~f~~i~Y~Kga~vl~mL~~~lG-~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~-----~ 310 (745)
.+|+...+.+. .+++..|+.++|.||+++|+||+..|| ++.|+++||.|+++|+|++++++|||+++.+.. +
T Consensus 349 ~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~ 428 (601)
T TIGR02411 349 DPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKV 428 (601)
T ss_pred CCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccc
Confidence 44554443332 256788999999999999999999999 999999999999999999999999999998763 2
Q ss_pred CCHHHH-HHHhhcCCCcceEEEEEe
Q 004561 311 EPVNKL-MNSWTKQKGYPVISVKVK 334 (745)
Q Consensus 311 ~~~~~~-~~~W~~~~g~P~~~v~~~ 334 (745)
.++..+ |+.|++++|+|.+++..+
T Consensus 429 ~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 429 DKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred chhhhhhHHHHhcCCCCCCcCCCCC
Confidence 456655 899999999999876643
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=5.2e-57 Score=494.85 Aligned_cols=261 Identities=51% Similarity=0.928 Sum_probs=234.8
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccceee-cCCeEEEEEEecCCCCccEEEEEEEcceEEEe
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVED 82 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~-~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~ 82 (745)
-++||.+||+||||||+|++||+|+++|++|++++|+|||++.+... .+++++++|..++|||+|++||+||+|..++.
T Consensus 128 t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~ 207 (390)
T PF01433_consen 128 TQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEV 207 (390)
T ss_dssp EE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEE
T ss_pred ecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccccccceeEeeecccccCchhhhhhcCccccccc
Confidence 47999999999999999999999999999999999999999988753 45799999999999999999999999999886
Q ss_pred eecCCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCC
Q 004561 83 HTSDGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS 162 (745)
Q Consensus 83 ~~~~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~ 162 (745)
.+.+|+++++|++|+..+..+++++.+.+++++|+++||+|||++|+|+|++|+|..|||||||+|+|++..++++++.+
T Consensus 208 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~ 287 (390)
T PF01433_consen 208 TTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDIS 287 (390)
T ss_dssp ETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS
T ss_pred ccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccc
Confidence 66657999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHH-HHhhhhccCCCCC
Q 004561 163 AAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHP 241 (745)
Q Consensus 163 ~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p 241 (745)
+...+..+..+||||+|||||||+||++||+|+||+||||+|++++++++.+|++.++..+..+.+ .++..|+...++|
T Consensus 288 ~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 367 (390)
T PF01433_consen 288 TIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHP 367 (390)
T ss_dssp -HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred cchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcc
Confidence 888888999999999999999999999999999999999999999999999999888888877765 7799999999999
Q ss_pred eeeecCCcchhhcccccccccch
Q 004561 242 IEVEVNHTGEIDEIFDAISYRKG 264 (745)
Q Consensus 242 ~~~~~~~~~~~~~~f~~i~Y~Kg 264 (745)
+..++.++.++...|+.++|.||
T Consensus 368 l~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 368 LSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp SSSSSSSESCGGGGSSHHHHHHH
T ss_pred eEeCCCCCCChHHhcCccccCCC
Confidence 99888889999999999999998
No 8
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=5.8e-52 Score=443.42 Aligned_cols=313 Identities=36% Similarity=0.635 Sum_probs=269.5
Q ss_pred ceEecCCCeeeEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHccCCCHHHHHHHHHhc-ccCCcHHHHHHHH
Q 004561 401 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 479 (745)
Q Consensus 401 wi~~N~~~~gyyRV~Yd~~~~~~l~~~L~~~~i~~~~r~~li~D~~~la~~g~~~~~~~l~l~~~l-~~E~~~~~w~~~~ 479 (745)
||++|.+++|||||+||+++|..|+.+|..+.|++.+|++|++|+|+++++|.++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 899999999999999999999999999987779999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 004561 480 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 559 (745)
Q Consensus 480 ~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~ 559 (745)
..|..+.+.+...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCc-CCc
Q 004561 560 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 636 (745)
Q Consensus 560 ~~~~--~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~~~-i~~ 636 (745)
++.. ..||||+|.+|||+++ ++|+.++|++++++|++++++.||..++.||||++|+++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~~---~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAGV---RNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHHT---TS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHHH---HHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 6433 3799999998776654 589999999999999999999999999999999999999999999999985 999
Q ss_pred ccchheee-ec-cc--cHHHHHHHHHHhHHHHHHHhCCC-cchhHHHHHhhccCCCHHHHHHHHHHHhc--CCCchHHHH
Q 004561 637 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 709 (745)
Q Consensus 637 qd~~~~~~-v~-~~--g~~~~w~fl~~n~~~i~~~~~~~-~~l~~ii~~~~~~~~t~~~~~e~~~F~~~--~~~~~~~~~ 709 (745)
||...++. ++ .+ |++++|+|+++||+.|.++++++ +.+..++..++..++|+++++++++||+. ++.++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688899
Q ss_pred HHHHHHHHH
Q 004561 710 LRQSIERVQ 718 (745)
Q Consensus 710 ~~~~le~i~ 718 (745)
++|++|+|+
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=4e-48 Score=401.81 Aligned_cols=313 Identities=29% Similarity=0.458 Sum_probs=258.5
Q ss_pred cCCCcCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCccccee-ecCCeEEEEEEecCCCCccEEEEEEEcceEEEe
Q 004561 4 FKGQPPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVED 82 (745)
Q Consensus 4 ~~~ep~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~-~~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~ 82 (745)
.|||+.+||.+|||+|.|+.|.||+..|.+|.++++++++....+. ...++..+.|+...|+|+|++||++|+....+
T Consensus 133 sQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e- 211 (613)
T KOG1047|consen 133 SQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE- 211 (613)
T ss_pred HHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc-
Confidence 4899999999999999999999999999999999999888665543 33457889999999999999999999987555
Q ss_pred eecCCeEEEEEEcCCccchHHHHHH-HHHHHHHHHHHHhCCCCCCCccCeeec-CCCCCccccccccceeecccccccCC
Q 004561 83 HTSDGIKVRVYCQVGKANQGKFALN-VAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQ 160 (745)
Q Consensus 83 ~~~~~~~i~v~~~~~~~~~~~~~l~-~~~~~l~~~e~~~g~~yP~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~ 160 (745)
-|..-+||+.|...+.+++-+. .+.++|..-|+.+| ||++.+||++++ |+|++||||||.|.+.... ||-++.
T Consensus 212 ---IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr 286 (613)
T KOG1047|consen 212 ---IGPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR 286 (613)
T ss_pred ---cCCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc
Confidence 3667899999999888888877 99999999999999 999999999999 5899999999976665555 766654
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHH-H--HhhhhccC
Q 004561 161 HSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-E--GLRLDGLA 237 (745)
Q Consensus 161 ~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~d~~~ 237 (745)
....+|||||||-||||+||...|.+.|||||||+|++..++..++|+... +|..-.. . .-..|.+.
T Consensus 287 --------sl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g 356 (613)
T KOG1047|consen 287 --------SLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFG 356 (613)
T ss_pred --------chhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcC
Confidence 357899999999999999999999999999999999999999999987432 2211111 1 12345555
Q ss_pred CCCCeeeecCC--cchhhcccccccccchhHHHHHHHHhhC-HHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCC---
Q 004561 238 ESHPIEVEVNH--TGEIDEIFDAISYRKGASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE--- 311 (745)
Q Consensus 238 ~~~p~~~~~~~--~~~~~~~f~~i~Y~Kga~vl~mL~~~lG-~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~--- 311 (745)
..++....+.+ .-+.+..|+.+.|.||..+|+.|++.+| ++.|...||.|+++|+|+.+.++||.+.|-+....
T Consensus 357 ~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk 436 (613)
T KOG1047|consen 357 ETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKK 436 (613)
T ss_pred CCcccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhh
Confidence 66666543322 1345678999999999999999999999 78899999999999999999999999999876532
Q ss_pred -CH--HHHHHHhhcCCCcceEEEE
Q 004561 312 -PV--NKLMNSWTKQKGYPVISVK 332 (745)
Q Consensus 312 -~~--~~~~~~W~~~~g~P~~~v~ 332 (745)
++ +--++.|++.+|+|-..-.
T Consensus 437 ~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 437 KDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred hhhhccccHHHHhcCCCCCCCCCC
Confidence 22 2347999999999985433
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=99.97 E-value=4.4e-28 Score=270.23 Aligned_cols=304 Identities=20% Similarity=0.309 Sum_probs=228.7
Q ss_pred cCCCCccccccCCCCCceEEEEEEEeCCCCeEEeCCcccceee--cCCeEEEEEEecCCCCccEEEEEEEcceEEEeeec
Q 004561 8 PPDARRCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEKV--DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS 85 (745)
Q Consensus 8 p~~AR~~fPC~Dep~~ka~f~l~i~~p~~~~~~sn~~~~~~~~--~~~~~~~~F~~t~~m~~yl~a~~vg~f~~~~~~~~ 85 (745)
+.+||.||||.|.+..+++|++.+++|+..+++|+|.+..... +-..++++|..+.|+.+..+||+||+|+.... .
T Consensus 182 ~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~--P 259 (1180)
T KOG1932|consen 182 SSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE--P 259 (1180)
T ss_pred ccccceEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--C
Confidence 4579999999999999999999999999999999999887632 23468999999999999999999999997742 3
Q ss_pred CCeEEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCCcHH
Q 004561 86 DGIKVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAA 165 (745)
Q Consensus 86 ~~~~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~ 165 (745)
.++++..|+.|+.....+..--...++++|||+++|..|||+.+.+|++|....--|....|.+++.+ +||+.+.- +
T Consensus 260 ~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iI--D 336 (1180)
T KOG1932|consen 260 SMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNII--D 336 (1180)
T ss_pred ccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhh--h
Confidence 47899999999998888888899999999999999988999999999999876666667778788777 88877633 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHHhhhhccC----CCCC
Q 004561 166 NKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHP 241 (745)
Q Consensus 166 ~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~p 241 (745)
.-......+|--+|.||||-++||..|+|.|+-+|+|.|+..+++++..|..++.-+...+.-....+|... .+.|
T Consensus 337 q~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~P 416 (1180)
T KOG1932|consen 337 QTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRP 416 (1180)
T ss_pred HHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccC
Confidence 333456789999999999999999999999999999999999999999997654322222211223333311 1212
Q ss_pred eeeecC--------------CcchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Q 004561 242 IEVEVN--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE 307 (745)
Q Consensus 242 ~~~~~~--------------~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~ 307 (745)
+..... +.......|..-.-.|+..+.+|+++.+|.+-|.+.++..+..
T Consensus 417 i~~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~----------------- 479 (1180)
T KOG1932|consen 417 ISPSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL----------------- 479 (1180)
T ss_pred CCcchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------
Confidence 221111 1111112222222357788888888888888777666655532
Q ss_pred hcCCCHHHHHHHhhcCCCcceEEEEE
Q 004561 308 GSGEPVNKLMNSWTKQKGYPVISVKV 333 (745)
Q Consensus 308 ~~~~~~~~~~~~W~~~~g~P~~~v~~ 333 (745)
++...++.+++.|++..|+|++.+..
T Consensus 480 ~~~~~~k~~~~~Wv~~~g~~~~r~~~ 505 (1180)
T KOG1932|consen 480 ASKMLLKSFFQTWVYGLGVPILRLGQ 505 (1180)
T ss_pred hhhhHHHHHHHHHHhccCCeeEEEEE
Confidence 22222467788888888888887763
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.49 E-value=1.8e-12 Score=136.59 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=164.6
Q ss_pred CeEEEEEEcCCc-cchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeec-CCCCCccccccccceeecccccccCCCCcH
Q 004561 87 GIKVRVYCQVGK-ANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAA 164 (745)
Q Consensus 87 ~~~i~v~~~~~~-~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~-p~~~~gamEn~gli~~~e~~ll~~~~~~~~ 164 (745)
|.+.++-.+... ..+.+...+.++++++.-.+.|| +-|+.++.+++. .+-.+|||||.......-....+.+ .
T Consensus 167 g~ph~~~~~g~~p~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~----~ 241 (558)
T COG3975 167 GAPHTIALRGELPNFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTD----Q 241 (558)
T ss_pred CCceeEEEeeccccccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccc----h
Confidence 444444443333 34667778899999999999999 789999988875 5666889998654443333322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-----------cchhHHHHHHHHHHHHHHHhhh--CchhHHHHHHHHHHHHHh
Q 004561 165 ANKQRVATVVAHELAHQWFGNLVTMEW-----------WTHLWLNEGFATWVSYLAADSL--FPEWKIWTQFLDECTEGL 231 (745)
Q Consensus 165 ~~~~~~~~~iaHElaHqWfGnlVt~~~-----------w~~~WL~EGfA~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 231 (745)
...+....+++||.+|-|.+..+.|.- -..+|+.|||++|+..++.-.. ... +.+...+.....++
T Consensus 242 ~ky~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~-~~~l~~la~tl~~~ 320 (558)
T COG3975 242 DKYQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISL-ETYLNYLAKTLARY 320 (558)
T ss_pred hHHHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcH-HHHHHHHHHHHHHH
Confidence 224667899999999999987776632 3569999999999997654332 221 11111222222222
Q ss_pred hhhccCCCCCeeee-------cCCcchhhcccccccccchhHHHHHHHHhh-----CHHHHHHHHHHHHHhhcc--CCCC
Q 004561 232 RLDGLAESHPIEVE-------VNHTGEIDEIFDAISYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAK 297 (745)
Q Consensus 232 ~~d~~~~~~p~~~~-------~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~l-----G~e~F~~~l~~yl~~~~~--~~~~ 297 (745)
.........|+... ...+++....-....|+||++|--+|...| |+..+.+.|+.+.+.+.. +..+
T Consensus 321 ~~~~gRl~~~laEsS~~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t 400 (558)
T COG3975 321 LNTPGRLRQSLAESSFDAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYT 400 (558)
T ss_pred hcCCceecccccccccchhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCC
Confidence 22222222222211 111111111111234999999999888888 567799999999988866 6679
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEe
Q 004561 298 TEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 344 (745)
Q Consensus 298 ~~dl~~~l~~~~~~~~~~~~~~W~~~~g~P~~~v~~~~~~~~l~Q~r 344 (745)
++++...+++++|.++.+|++..+++.--|.+.--....++++++++
T Consensus 401 ~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 401 PEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999999999999999999999998877766543333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.16 E-value=5.4e-11 Score=108.28 Aligned_cols=105 Identities=30% Similarity=0.490 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHHhhhhccCCCCCeeeecCC
Q 004561 169 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 248 (745)
Q Consensus 169 ~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~ 248 (745)
.+..+++||++|+|+++.+........|++||+|+|++... .. .+.......+..+...+..++......
T Consensus 24 ~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (128)
T PF13485_consen 24 WLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFDF 93 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhccccc
Confidence 45689999999999999998777788999999999999331 11 111111122222332222222211111
Q ss_pred cchhhcccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 004561 249 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 287 (745)
Q Consensus 249 ~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e~F~~~l~~y 287 (745)
...+....|.+|.+++++|....|++.|++.|+.|
T Consensus 94 ----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 94 ----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred ----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445668999999999999999999999999875
No 13
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.83 E-value=9.2e-06 Score=71.45 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcccccc-----------cccchhHHHHHHHHHHHHHHHhh
Q 004561 170 VATVVAHELAHQWFGNLVTM-----------EWWTHLWLNEGFATWVSYLAADS 212 (745)
Q Consensus 170 ~~~~iaHElaHqWfGnlVt~-----------~~w~~~WL~EGfA~y~~~~~~~~ 212 (745)
...++|||+.|.|.+..+.| ..-+.+|+-|||++|++.+++..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 56789999999999755554 55678999999999999887655
No 14
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.82 E-value=0.0011 Score=69.52 Aligned_cols=222 Identities=20% Similarity=0.244 Sum_probs=122.8
Q ss_pred cCCeEEEEEEcCC-----ccc--hHHHHHHHHH---HHHHHHHHHhCCCC-----CCCccC------eeec---CCC-CC
Q 004561 85 SDGIKVRVYCQVG-----KAN--QGKFALNVAV---KTLELYKEYFAVPY-----SLPKLD------MIAI---PDF-AA 139 (745)
Q Consensus 85 ~~~~~i~v~~~~~-----~~~--~~~~~l~~~~---~~l~~~e~~~g~~y-----P~~k~d------~v~~---p~~-~~ 139 (745)
.+|..+.||...+ ... .++...+... ++.+...+.||-|+ .-++++ +|.+ |+. ..
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 5678889998766 222 2222332222 36666677888663 233443 6655 221 12
Q ss_pred c----------------cccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHH--hccccccc--ccchhHHHH
Q 004561 140 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW--FGNLVTME--WWTHLWLNE 199 (745)
Q Consensus 140 g----------------amEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW--fGnlVt~~--~w~~~WL~E 199 (745)
| .-.|.+.++|-....++....+ ....+..++|||+-|+= .-+.|... .-.|+||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~~---~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGNS---GPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCCc---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 3334455555544333322211 13457899999999974 33344433 236899999
Q ss_pred HHHHHHHHHHHhhhCchhHH-HHHHHHHHHHHhhhhccCCCCCeeeecCCcchhhcccccccccchhHHHHHHHHhhCHH
Q 004561 200 GFATWVSYLAADSLFPEWKI-WTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 278 (745)
Q Consensus 200 GfA~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kga~vl~mL~~~lG~e 278 (745)
|+|.-+|.++..+..+.... .+....... ........+.+..- ... .-....|....+++.-|....|.+
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~---~~~~~~~~~~l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~ 243 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNNIRDSRIPYYN---NYTSGNYNCSLTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGD 243 (366)
T ss_pred HHHHHHHHHHhcCCCcccCccccccHHHHh---hccccCCCcceeec-CCC-----ccccccchhHHHHHHHHHHHcChH
Confidence 99999999887776432110 000011111 11111111222111 111 112356999999998888888988
Q ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHh-h-cCCCHHHHHHHhhcCC
Q 004561 279 CFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 324 (745)
Q Consensus 279 ~F~~~l~~yl~~~~~~~~~~~dl~~~l~~-~-~~~~~~~~~~~W~~~~ 324 (745)
.+++.|.. ....+..+..++..+ . .+.++.++|.+|...-
T Consensus 244 ~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 244 FYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 87666652 123566777766554 3 3568999999997655
No 15
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.44 E-value=0.052 Score=52.98 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCccCeeec--CCCCC----ccccccccceeecccccccCCCCcHHHHHHHHHHHHHH
Q 004561 105 ALNVAVKTLELYKEYFAVP-YSLPKLDMIAI--PDFAA----GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHE 177 (745)
Q Consensus 105 ~l~~~~~~l~~~e~~~g~~-yP~~k~d~v~~--p~~~~----gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHE 177 (745)
+......++.+..+.|-.+ .+-+..+.|.+ .++.. +|=.+-.-|.++...+--.+.. ...+..+..++.||
T Consensus 26 a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~--~~~~~Ei~Gvl~HE 103 (205)
T PF04450_consen 26 AEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYIAKYPAD--GDVRDEIIGVLYHE 103 (205)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHHhhcccc--cchHHHHHHHHHHH
Confidence 4445555566666666433 22333444432 33311 1111123466665533222211 22345688999999
Q ss_pred HHHHHhcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHHhhhhccCCCCCeeeecCCcchhhcccc
Q 004561 178 LAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFD 257 (745)
Q Consensus 178 laHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~ 257 (745)
++|-|=.+--. -.--||-||+|.|+-..+- ..| .....|.. ...++
T Consensus 104 ~~H~~Q~~~~~---~~P~~liEGIADyVRl~aG--~~~--------------------~~w~~p~~---------~~~wd 149 (205)
T PF04450_consen 104 MVHCWQWDGRG---TAPGGLIEGIADYVRLKAG--YAP--------------------PHWKRPGG---------GDSWD 149 (205)
T ss_pred HHHHhhcCCCC---CCChhheecHHHHHHHHcC--CCC--------------------ccccCCCC---------CCCcc
Confidence 99966433321 1134899999999976521 000 00011111 01233
Q ss_pred cccccchhHHHHHHHH-hhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCCCHHHHHHH
Q 004561 258 AISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 319 (745)
Q Consensus 258 ~i~Y~Kga~vl~mL~~-~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~ 319 (745)
-.|.-.|.+|.-|+. ..|+. |-.-|..=+++..| +.+++|..+ +|+++.++++.
T Consensus 150 -~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW~e 204 (205)
T PF04450_consen 150 -DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELWAE 204 (205)
T ss_pred -cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHHhh
Confidence 368888999999988 66643 55555555555555 556666554 58889888765
No 16
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.44 E-value=1.2 Score=47.86 Aligned_cols=303 Identities=16% Similarity=0.135 Sum_probs=143.2
Q ss_pred EEEEEEEeecCCCCCCCCeeEEEEEEEEcc--ccc-----eeeEEeeccceEEEecccccccccCCCCCCCceEecCCCe
Q 004561 337 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 409 (745)
Q Consensus 337 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~wi~~N~~~~ 409 (745)
+++++|..--..++.....|+|||.+..-+ +.. ...+.++..++++.+..+. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 478889765444555566899999986532 222 1235678888999987642 12 4677899999
Q ss_pred eeEEEEcC--HHHHHHHHHHHHhcCCChhhHHH--------HHHHHHHHHHccC-CC-HHHHHHHHHhcccC--CcHHHH
Q 004561 410 GFYRVKYD--KDLAARLGYAIEMKQLSETDRFG--------ILDDHFALCMARQ-QT-LTSLLTLMASYSEE--TEYTVL 475 (745)
Q Consensus 410 gyyRV~Yd--~~~~~~l~~~L~~~~i~~~~r~~--------li~D~~~la~~g~-~~-~~~~l~l~~~l~~E--~~~~~w 475 (745)
.+-++.|| ++.+..|... + =++.+|.. +|.+...-..+|. .. -..+++.++.+-.+ -+...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 99888886 3344444332 1 12344421 1111111112221 11 12355555443322 222222
Q ss_pred HHHHH--HHHHHHHHHhccChHHH--------HHHHHHHHHHhHHhhhhcCCcc---CCCCCHHHHHHHHHHHHHHHHcC
Q 004561 476 SNLIT--ISYKIGRIAADARPELL--------DYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 542 (745)
Q Consensus 476 ~~~~~--~l~~i~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 542 (745)
..++. ...+|...+..-+|+.. ..+..-+...+..+|+++.-.. ...+..-.+.||..++..++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 22211 12233222211112211 2222223333444555551111 01223345789999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHH
Q 004561 543 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 622 (745)
Q Consensus 543 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll 622 (745)
.++..+.|.+.|+.-. .-.-|-+.+.+++..-....++..+..+++++...-.-+|--.+.|.+... ..+
T Consensus 233 ~~~~~~la~~qy~~A~--------nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~--~~l 302 (367)
T PF11940_consen 233 DPEAAELAQEQYKSAD--------NMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP--DTL 302 (367)
T ss_dssp CTHHHHHHHHHHHHSS--------SHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST--THH
T ss_pred chHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc--cHH
Confidence 9999999999998631 122344444555442111233345666666665555556777777766554 456
Q ss_pred HHHHHHhhcCcCCcccchheee-eccc-cHHHHHHHHHHhHHHHHHHhCCC
Q 004561 623 LEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGSG 671 (745)
Q Consensus 623 ~~~L~~~l~~~i~~qd~~~~~~-v~~~-g~~~~w~fl~~n~~~i~~~~~~~ 671 (745)
.++-.+.-.+. |. -..| .|.++-.|...|...+...-|.|
T Consensus 303 ~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 303 ERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 66655544432 22 2334 66666777777777766655543
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.91 E-value=0.0054 Score=54.69 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccc---cccccchhHHHHHHHHHHHHHHH
Q 004561 172 TVVAHELAHQWFGNLV---TMEWWTHLWLNEGFATWVSYLAA 210 (745)
Q Consensus 172 ~~iaHElaHqWfGnlV---t~~~w~~~WL~EGfA~y~~~~~~ 210 (745)
.+++||.+||=.-|.= ....| -.|+.||||+|+|..-.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~-P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADW-PRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCC-chHHHHhHHHHcCCCcc
Confidence 5899999999876541 11222 28999999999996543
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.95 E-value=0.47 Score=46.31 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCeeecCCCCCc-----cccccccceeecccccc-cCCCCcHHHHHHHHHHHHHHHHHH
Q 004561 108 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 181 (745)
Q Consensus 108 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~g-----amEn~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 181 (745)
.+.+.+....+.| |.+.+++.++|.-+.+ .+...|-..+...-+++ -+.. .....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3455555555555 4457777655432221 11123333444443333 2221 22346889999999998
Q ss_pred Hhcccccc----cccchhHHHHHHHHHHHHHHHhhhC
Q 004561 182 WFGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 214 (745)
Q Consensus 182 WfGnlVt~----~~w~~~WL~EGfA~y~~~~~~~~~~ 214 (745)
+--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 63332221 1123566999999999977655543
No 19
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.76 E-value=2.8 Score=48.58 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHH-ccCCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChH----H
Q 004561 422 ARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE----L 496 (745)
Q Consensus 422 ~~l~~~L~~~~i~~~~r~~li~D~~~la~-~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~i~~~~~~~~~~----~ 496 (745)
..|.+.+..+.++..++++++.=+..+++ .-.--.+.+++|++.=....+..++.+++-.+..+-+......+. .
T Consensus 360 ~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~ 439 (574)
T smart00638 360 KFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV 439 (574)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh
Confidence 34444455567888888998887777763 333344555555554334456778888887777776655332221 1
Q ss_pred HHHHHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhh
Q 004561 497 LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYV 576 (745)
Q Consensus 497 ~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~ 576 (745)
...+.+|+.+.+....++ ++ ..-+...+..++..|++..+... ..++.+ ....|+.+|-.+..
T Consensus 440 ~~~~~~~l~~~l~~~~~~-------~~----~~~~~~~LkaLGN~g~~~~i~~l----~~~l~~--~~~~~~~iR~~Av~ 502 (574)
T smart00638 440 LEELLKYLHELLQQAVSK-------GD----EEEIQLYLKALGNAGHPSSIKVL----EPYLEG--AEPLSTFIRLAAIL 502 (574)
T ss_pred HHHHHHHHHHHHHHHHhc-------CC----chheeeHHHhhhccCChhHHHHH----HHhcCC--CCCCCHHHHHHHHH
Confidence 234445555444433221 11 12246678888999999777543 444432 24478888875554
Q ss_pred hheeccccCCHHHHHHHHHHHHcCCCHHH-HHH-HHHHhCCCCCHHHHHHHHHHhhcC
Q 004561 577 AVMQKVSASDRSGYESLLRVYRETDLSQE-KTR-ILSSLASCPDVNIVLEVLNFLLSS 632 (745)
Q Consensus 577 ~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-r~~-il~aL~cs~d~~ll~~~L~~~l~~ 632 (745)
++-+.+..-....-+.++..|.+...+.| |.. ++..|-|-++...++++.+.+..+
T Consensus 503 Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 503 ALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 54433323456677889999998666555 555 444555669999999999887654
No 20
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=92.18 E-value=0.6 Score=48.69 Aligned_cols=116 Identities=24% Similarity=0.269 Sum_probs=70.6
Q ss_pred EEEcCCccchHHHHHHHHHHHHHHHHHHhCCCC------------CCCccCeeecCCCCCccccc----cccceeecc--
Q 004561 92 VYCQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAMEN----YGLVTYRET-- 153 (745)
Q Consensus 92 v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~y------------P~~k~d~v~~p~~~~gamEn----~gli~~~e~-- 153 (745)
+...|......+.-+..+.++=+|-.+.+|.|= |+--..+++.|.+..-.-.. .|++.|+.-
T Consensus 38 vl~dp~~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~ 117 (337)
T PF10023_consen 38 VLADPATPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFD 117 (337)
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCC
Confidence 345566666777778888888888888887541 33334566677764332222 355555531
Q ss_pred -----------------------------cccccCCCCcH--HHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHH
Q 004561 154 -----------------------------ALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFA 202 (745)
Q Consensus 154 -----------------------------~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA 202 (745)
..+-||-.++. -....++.+|-||+|||=+. .+ +|.=+||+||
T Consensus 118 ~~~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfA 191 (337)
T PF10023_consen 118 EADARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGELARLIFHELAHQTLY----VK--GDTAFNESFA 191 (337)
T ss_pred HHHHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchHHHHHHHHHHhhceee----cC--CCchhhHHHH
Confidence 01112211111 12346899999999999432 11 3566899999
Q ss_pred HHHHHHHHhhh
Q 004561 203 TWVSYLAADSL 213 (745)
Q Consensus 203 ~y~~~~~~~~~ 213 (745)
++.+...+.+.
T Consensus 192 tfVe~~G~~~w 202 (337)
T PF10023_consen 192 TFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHH
Confidence 99998766553
No 21
>PRK04860 hypothetical protein; Provisional
Probab=89.08 E-value=0.98 Score=42.22 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCcccc--ccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 004561 104 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 181 (745)
Q Consensus 104 ~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamE--n~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 181 (745)
.+...+...+..-+++||.|+|.|+..+-.= ...||+- .-+-|.+... ++.+. ....+..+|+||+||.
T Consensus 4 ~~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~~-----~~~~l~~~v~HEl~H~ 74 (160)
T PRK04860 4 AVMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLEN-----QQAFIDEVVPHELAHL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhhC-----cHHHHHhHHHHHHHHH
Confidence 3456677778888999998888776544321 1124432 2233444432 22221 2346788999999998
Q ss_pred Hh
Q 004561 182 WF 183 (745)
Q Consensus 182 Wf 183 (745)
|-
T Consensus 75 ~~ 76 (160)
T PRK04860 75 LV 76 (160)
T ss_pred HH
Confidence 73
No 22
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=87.42 E-value=0.64 Score=45.81 Aligned_cols=41 Identities=32% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhhh
Q 004561 167 KQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 213 (745)
Q Consensus 167 ~~~~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~ 213 (745)
...++.+|-||+|||=|.- . +|.=+||+||++.+...+++.
T Consensus 194 d~~lA~LIFHELAHQk~Y~--~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 194 DTYLASLIFHELAHQKIYV--N----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred hHHHHHHHHHHHhhheEee--c----CcchHhHHHHHHHHHHhHHHH
Confidence 3468899999999996532 1 356689999999998777653
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=85.40 E-value=4.9 Score=39.41 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 004561 103 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 182 (745)
Q Consensus 103 ~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 182 (745)
+.+.+.....+..|++.+|.++ +++.+=-.- ...|....-|.|+++-.-+.+.+. -+..+|+||+||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~k-srWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPP--PKIKIRDMK-SRWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--ceEEEeehh-hccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhc
Confidence 4455667777888888888643 333332222 224655557788888773333332 46789999999986
Q ss_pred hcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHH
Q 004561 183 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 222 (745)
Q Consensus 183 fGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 222 (745)
. ++.-...| ..+++..|+|+....
T Consensus 177 ~-----~nHs~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 177 H-----PNHSKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred c-----CCCCHHHH-----------HHHHHHCcCHHHHHH
Confidence 5 44444555 234556777654433
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=85.13 E-value=1 Score=41.64 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHHHHH-HHhCCCCCCCccCeeecCCCCCccccc-cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 111 KTLELYK-EYFAVPYSLPKLDMIAIPDFAAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 111 ~~l~~~e-~~~g~~yP~~k~d~v~~p~~~~gamEn-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
+.++.++ .+|+.++|-+++..-.--....|.... .+.|.++.. ++ . ......+..+|.|||+|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i~w~~r~~~~~G~~~~~~~~I~ln~~-l~-~-----~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKVVWNKRLRKTGGRCLLKSAEIRLNPK-LL-T-----ENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEehhhhhhhHHhhcCCCEEEeCHH-HH-h-----hccHHHHHhhHHHHHHHHHHH
Confidence 3444455 889877776532221110111233322 344555443 21 1 111235778999999999964
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.44 E-value=15 Score=43.01 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHH-HH
Q 004561 529 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KT 607 (745)
Q Consensus 529 ~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-r~ 607 (745)
.-+...|..++.+|++..+.. +..+..+ ....|..+|-++.-++-+....-.....+.++..|.+...+.| |.
T Consensus 505 ~~~~~~LkaLgN~g~~~~i~~----l~~~i~~--~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRi 578 (618)
T PF01347_consen 505 EEKIVYLKALGNLGHPESIPV----LLPYIEG--KEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRI 578 (618)
T ss_dssp HHHHHHHHHHHHHT-GGGHHH----HHTTSTT--SS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHH
T ss_pred HHHHHHHHHhhccCCchhhHH----HHhHhhh--ccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHH
Confidence 445667888889999866554 3455544 2258889997655555433334455778999999998777665 44
Q ss_pred HH-HHHhCCCCCHHHHHHHHHHhhc
Q 004561 608 RI-LSSLASCPDVNIVLEVLNFLLS 631 (745)
Q Consensus 608 ~i-l~aL~cs~d~~ll~~~L~~~l~ 631 (745)
.. +.-|-|-++...++++...+-.
T Consensus 579 aA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 579 AAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHT---HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 43 3344566999999999887654
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=83.01 E-value=39 Score=40.25 Aligned_cols=128 Identities=14% Similarity=0.193 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcccc-cccccchhHHHHHHHHHHHHHHHhhhCc---hhHH---HHHHHHHHHHHhhhhccCCCCCeeee
Q 004561 173 VVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEVE 245 (745)
Q Consensus 173 ~iaHElaHqWfGnlV-t~~~w~~~WL~EGfA~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~d~~~~~~p~~~~ 245 (745)
.+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-. ....+...+.++ ..+..|
T Consensus 239 ~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~~~~---- 309 (775)
T PF03272_consen 239 GALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDNNKP---- 309 (775)
T ss_pred hhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----HhcCCC----
Confidence 689999999988777 344566888 667888888765542110 1110 001111111111 001101
Q ss_pred cCCcchhhcccccc-cccchhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCC--CHHHHHHHHHhh-cCCCHHHHHHHh
Q 004561 246 VNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 320 (745)
Q Consensus 246 ~~~~~~~~~~f~~i-~Y~Kga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~--~~~dl~~~l~~~-~~~~~~~~~~~W 320 (745)
|+.. .-.|=..+..|+...-|++.|+..-+.|-+.. -.+. ..-.+++-+... ++.|+..+++-|
T Consensus 310 ----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~~-~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 ----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQLN-TNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred ----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 1111 23465666668888899999988888877652 2222 222333444445 889999999988
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=77.17 E-value=5.1 Score=32.90 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHH
Q 004561 528 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 607 (745)
Q Consensus 528 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~ 607 (745)
...|..++..+|..++++.+....+++ .+ -++.+|..+..++.. .|+.+.++.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467888888999888876655554444 33 246788877666554 567778899999888877766688
Q ss_pred HHHHHhC
Q 004561 608 RILSSLA 614 (745)
Q Consensus 608 ~il~aL~ 614 (745)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 28
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=77.13 E-value=2.6 Score=44.43 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhh
Q 004561 170 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 212 (745)
Q Consensus 170 ~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~ 212 (745)
.-.++|||+|||= | ...|+=|.|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 4578999999995 2 35889999999987654
No 29
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=73.52 E-value=5 Score=37.19 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCc--cCeeecCCC---CCccccccccceeecccc-cccCCCCcHHHHHHHHHH
Q 004561 100 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDF---AAGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 173 (745)
Q Consensus 100 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~d~v~~p~~---~~gamEn~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 173 (745)
..+..|...+.++.+||.+.|| .-++.. ..++..-.+ ...|.-+-..++|.+..- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 3456677888999999999999 556652 333322111 122333333444443321 11111 112569
Q ss_pred HHHHHHHH
Q 004561 174 VAHELAHQ 181 (745)
Q Consensus 174 iaHElaHq 181 (745)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999996
No 30
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=67.82 E-value=8.8 Score=37.09 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHhh
Q 004561 170 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 212 (745)
Q Consensus 170 ~~~~iaHElaHqWfGnlVt~~~w~~~WL~EGfA~y~~~~~~~~ 212 (745)
...++|||+.|-|.- ...----+..+-||++..+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 357899999999962 11111226789999999999987754
No 31
>PRK09687 putative lyase; Provisional
Probab=67.09 E-value=1.6e+02 Score=30.45 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHH
Q 004561 529 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 608 (745)
Q Consensus 529 ~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~ 608 (745)
..|..++..++..+++..+...... +.+ -++++|.+.-.++.. +..++...-+.|..... ..+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~----L~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L~-D~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINL----LKD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAMLQ-DKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHH----hcC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhc-CCChHHHHH
Confidence 4566666666666666554443332 222 133566543322222 12334455555665553 334455777
Q ss_pred HHHHhCCCCCHHHHHHHHHHh
Q 004561 609 ILSSLASCPDVNIVLEVLNFL 629 (745)
Q Consensus 609 il~aL~cs~d~~ll~~~L~~~ 629 (745)
.+.|||...++.-+..+++.+
T Consensus 212 A~~aLg~~~~~~av~~Li~~L 232 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKEL 232 (280)
T ss_pred HHHHHHccCChhHHHHHHHHH
Confidence 777777777776666666654
No 32
>PRK05457 heat shock protein HtpX; Provisional
Probab=62.48 E-value=13 Score=38.59 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 004561 109 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185 (745)
Q Consensus 109 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 185 (745)
..+.++-+.+..|+ |.|++.++-.+. |..|.-.+.+.|.+.+. ++-. -+.+.+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~------L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQN------MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 34555666777775 567776664432 22332223345555553 2211 123468899999999986665
Q ss_pred c
Q 004561 186 L 186 (745)
Q Consensus 186 l 186 (745)
.
T Consensus 150 ~ 150 (284)
T PRK05457 150 M 150 (284)
T ss_pred H
Confidence 3
No 33
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=65 Score=34.79 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhCchhHHHHHHHHH
Q 004561 196 WLNEGFATWVSYLAADSLFPEWKIWTQFLDE 226 (745)
Q Consensus 196 WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~ 226 (745)
-||||-|+|-.+-++.+++.+.+.-..++.+
T Consensus 269 VMNEGWAtfWHytiln~lydE~~~~~~~~lE 299 (495)
T COG2719 269 VMNEGWATFWHYTILNHLYDEGKLTERAMLE 299 (495)
T ss_pred HhhhhHHHHHHHHHHHhhhhhcccChHHHHH
Confidence 5899999999999999887765544444443
No 34
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=57.25 E-value=42 Score=33.32 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhHHhhhhcC
Q 004561 437 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 516 (745)
Q Consensus 437 ~r~~li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 516 (745)
-|..++.-...+.+.|.++...+.+++..|-.|-+..|-.......+.+-+.++..+. ....+.+.+=+.+..+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~-~~~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDN-KNGKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS----S-STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCc-ccchHHHHHHHHHHHHhcC-c
Confidence 4778888888899999999999999999999999988888877777777666654211 1112333333333322222 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 004561 517 WDSKPGESHLDALLRGEIFTALALLG-HKETLNEASKRFHA 556 (745)
Q Consensus 517 ~~~~~~~~~~~~~lr~~il~~ac~~g-~~~c~~~a~~~f~~ 556 (745)
--...+....-...+..++.-.|... .+.|+-.-..+|++
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd 122 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRD 122 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Confidence 11112233345678889999888865 33565555556654
No 35
>PRK03072 heat shock protein HtpX; Provisional
Probab=57.06 E-value=18 Score=37.58 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 108 VAVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 108 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
...+.++-+.+..|+ |.|++-++-.+. |..|....-+.|...+. ++-. -+.+.+..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-ILQI------LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HHHh------CCHHHHHHHHHHHHHHHhcC
Confidence 345666777777885 466765554332 22232111223433333 3311 12346889999999996554
Q ss_pred c
Q 004561 185 N 185 (745)
Q Consensus 185 n 185 (745)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 4
No 36
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=57.01 E-value=8.9 Score=41.65 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHhCCCCCCCc--cCeeecCCCCCc-cccccccceeecccccccCCCCcH-HHHHHHH
Q 004561 96 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAG-AMENYGLVTYRETALLYDDQHSAA-ANKQRVA 171 (745)
Q Consensus 96 ~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~d~v~~p~~~~g-amEn~gli~~~e~~ll~~~~~~~~-~~~~~~~ 171 (745)
++....+..|...+.++.+||.+.||.. -++. +.++..--| | -.+| .......++|+...... .....-.
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHy--G~~ynN---AfWdG~qMvyGDGDG~~f~~~S~sL 338 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHY--GKNYNN---AFWDGDQMVYGDGDGSFFTPFSGSL 338 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEee--cccccc---ccccCceeEeecCCcceeccccccc
Confidence 3444556677788899999999999933 4432 333332212 2 2222 12222334443321110 0011124
Q ss_pred HHHHHHHHHHH---hcccccccccchhHHHHHHHHHHHHHHHhh
Q 004561 172 TVVAHELAHQW---FGNLVTMEWWTHLWLNEGFATWVSYLAADS 212 (745)
Q Consensus 172 ~~iaHElaHqW---fGnlVt~~~w~~~WL~EGfA~y~~~~~~~~ 212 (745)
.++||||.|.- --+|+.-.... =|||+|+.-+.-++...
T Consensus 339 DVvAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i~~~ 380 (507)
T COG3227 339 DVVAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLIEQY 380 (507)
T ss_pred ceehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHHHHH
Confidence 68999999954 44555544333 38999999998655433
No 37
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=56.18 E-value=15 Score=36.36 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCCCCccCeeecCCCCCcccccc----ccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhccc
Q 004561 111 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY----GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 186 (745)
Q Consensus 111 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~----gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnl 186 (745)
+.++-+.+..|.+.|.+++-++-.|. ..|.-.. ..|..... ++... +...+..++|||++|---++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~~------~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLESL------SEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHHS------SHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhcc------cHHHHHHHHHHHHHHHHcCCc
Confidence 33444444445566655555554444 2222221 12455444 33211 234688999999999988766
Q ss_pred ccc
Q 004561 187 VTM 189 (745)
Q Consensus 187 Vt~ 189 (745)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 544
No 38
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=56.07 E-value=68 Score=31.94 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 004561 103 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 182 (745)
Q Consensus 103 ~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 182 (745)
+.+.+.....+..|.+.+|.+++--++. ..- -.-|+-...|-|.+... +..- ...-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k-~~WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMK-RRWGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--ecc-ceeeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3566677777888899999765432222 111 11233333343444433 1111 12346789999999988
Q ss_pred hcccccccccchhHHHHHHHHHHHHHHHhhhCchhHHHHH
Q 004561 183 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 222 (745)
Q Consensus 183 fGnlVt~~~w~~~WL~EGfA~y~~~~~~~~~~~~~~~~~~ 222 (745)
..| .-...| ..++..+|++.....
T Consensus 188 e~n-----Hs~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKN-----HSKRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhh-----ccHHHH-----------HHHHHHCCChHHHHH
Confidence 776 223344 234556777655433
No 39
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.81 E-value=11 Score=41.26 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCccCeeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 004561 125 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 182 (745)
Q Consensus 125 P~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 182 (745)
|=..++++.|-|-...|.-.+|--++--+.++...+ +.-.++.|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 334567888866544444444433332222333222 12358999999999964
No 40
>PRK04897 heat shock protein HtpX; Provisional
Probab=54.54 E-value=22 Score=37.25 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 108 VAVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 108 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
...+.++-+.+..|+ |.|++-++--+. |..|.-.+-+.|.+... ++-. -+.+.+..++|||++|-=-|
T Consensus 81 ~L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~~------l~~~El~aVlAHElgHi~~~ 151 (298)
T PRK04897 81 ELWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLAI------MNREELEGVIGHEISHIRNY 151 (298)
T ss_pred HHHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHhh------CCHHHHHHHHHHHHHHHhcC
Confidence 355666667777775 566776654332 22222222344555443 2211 12346889999999996544
Q ss_pred c
Q 004561 185 N 185 (745)
Q Consensus 185 n 185 (745)
+
T Consensus 152 d 152 (298)
T PRK04897 152 D 152 (298)
T ss_pred C
Confidence 4
No 41
>PRK03001 M48 family peptidase; Provisional
Probab=53.71 E-value=22 Score=36.90 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 108 VAVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 108 ~~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
...+.++-+.+..|+| .|++-++--+. |..|.-.+.+.|...+. ++-. -+.+.+..++|||++|-=-+
T Consensus 68 ~L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll~~------l~~~El~aVlAHElgHi~~~ 138 (283)
T PRK03001 68 QFYRMVRELAQRAGLP--MPKVYLINEDQPNAFATGRNPEHAAVAATTG-ILRV------LSEREIRGVMAHELAHVKHR 138 (283)
T ss_pred HHHHHHHHHHHHcCCC--CCeEEEecCCCcceEEecCCCCCeEEEecHH-HHhh------CCHHHHHHHHHHHHHHHhCC
Confidence 3446666667777865 45554443221 21221112234554444 2211 12346889999999997544
Q ss_pred c
Q 004561 185 N 185 (745)
Q Consensus 185 n 185 (745)
+
T Consensus 139 h 139 (283)
T PRK03001 139 D 139 (283)
T ss_pred C
Confidence 3
No 42
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=53.43 E-value=22 Score=33.06 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004561 167 KQRVATVVAHELAHQWFG 184 (745)
Q Consensus 167 ~~~~~~~iaHElaHqWfG 184 (745)
...+..+|.|||+|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446889999999999973
No 43
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=52.26 E-value=13 Score=32.34 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcccc
Q 004561 170 VATVVAHELAHQWFGNLV 187 (745)
Q Consensus 170 ~~~~iaHElaHqWfGnlV 187 (745)
-..+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 357999999999997654
No 44
>PRK04351 hypothetical protein; Provisional
Probab=51.99 E-value=14 Score=34.14 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004561 167 KQRVATVVAHELAHQ 181 (745)
Q Consensus 167 ~~~~~~~iaHElaHq 181 (745)
...+..+|+||++|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 456889999999995
No 45
>PRK03982 heat shock protein HtpX; Provisional
Probab=50.68 E-value=35 Score=35.56 Aligned_cols=68 Identities=26% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 004561 109 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185 (745)
Q Consensus 109 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 185 (745)
..+.++-+.+..|+| .|++-++--+. |..|--..-+.|...+. ++- . -+...+..++|||++|-=-++
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----l~~~El~AVlAHElgHi~~~h 140 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEG-ILN-L-----LNEDELEGVIAHELTHIKNRD 140 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 445556666667754 45554443221 11111112344544444 221 1 123468999999999976554
No 46
>PRK01345 heat shock protein HtpX; Provisional
Probab=50.41 E-value=27 Score=36.84 Aligned_cols=69 Identities=29% Similarity=0.345 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 004561 109 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185 (745)
Q Consensus 109 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 185 (745)
..++++-+.+..|+| .|++-++-.+. |..|.-..-+.|.+.+. ++-.- +...+..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~L------~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQRL------SPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhhC------CHHHHHHHHHHHHHHHHcCC
Confidence 456677777778865 45654443222 21221111234555444 33211 23468899999999976554
Q ss_pred c
Q 004561 186 L 186 (745)
Q Consensus 186 l 186 (745)
.
T Consensus 140 ~ 140 (317)
T PRK01345 140 T 140 (317)
T ss_pred H
Confidence 3
No 47
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=49.99 E-value=28 Score=36.39 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCCCCccCeeecCCCCCccccc---cccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhccccc
Q 004561 114 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 188 (745)
Q Consensus 114 ~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 188 (745)
.-....-|++ +.+++.++..|...+-++.. .|.|...+. ++- . -+...+..+++||++|.=-++.+.
T Consensus 106 ~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll~-~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 106 AELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LLD-L-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 3334445533 34566666655433334444 367776665 332 1 123468899999999987776554
No 48
>PRK02391 heat shock protein HtpX; Provisional
Probab=49.34 E-value=31 Score=36.03 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcc
Q 004561 109 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 185 (745)
Q Consensus 109 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 185 (745)
..+.++.+.+..|+| .|++-++-.+. |..|.-..-+.|.+.+. ++-.- +...+..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~~L------~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMRRL------DPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHhhC------CHHHHHHHHHHHHHHHHcCC
Confidence 445556666777754 45665554332 22221112334554443 22111 13458899999999976654
Q ss_pred c
Q 004561 186 L 186 (745)
Q Consensus 186 l 186 (745)
.
T Consensus 149 i 149 (296)
T PRK02391 149 V 149 (296)
T ss_pred H
Confidence 3
No 49
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=47.06 E-value=58 Score=31.47 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 004561 169 RVATVVAHELAHQW 182 (745)
Q Consensus 169 ~~~~~iaHElaHqW 182 (745)
..+.++|||++|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999999996
No 50
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=45.63 E-value=4e+02 Score=28.31 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004561 532 GEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILS 611 (745)
Q Consensus 532 ~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~ 611 (745)
..|-..+++++..+-.....+-+. .+|.....+ +|..+..+ .-+.+.-+.+.++...+.+......+++
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~---------~lP~~vl~a-L~~~LEh~-~l~~~l~~~l~~~~~~~~d~~~~~a~lR 238 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALP---------HLPPEVLYA-LCGCLEHQ-PLPDKLAEALLERLEQAPDLELLSALLR 238 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHh---------hCChHHHHH-HHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457778888887754322222221 145554432 23323333 2367778999999988888888999999
Q ss_pred HhCCCCCHHHHHHHHHHhhcC-cCCcccchhee
Q 004561 612 SLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGL 643 (745)
Q Consensus 612 aL~cs~d~~ll~~~L~~~l~~-~i~~qd~~~~~ 643 (745)
|||++....+....++.++.. .....|...++
T Consensus 239 Als~~~~~~~~~~~i~~~L~~~~~~~~e~Li~I 271 (340)
T PF12069_consen 239 ALSSAPASDLVAILIDALLQSPRLCHPEVLIAI 271 (340)
T ss_pred HHcCCCchhHHHHHHHHHhcCcccCChHHHHHH
Confidence 999999999988878888865 34455544444
No 51
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=43.75 E-value=14 Score=31.38 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q 004561 169 RVATVVAHELAHQW 182 (745)
Q Consensus 169 ~~~~~iaHElaHqW 182 (745)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 46789999999999
No 52
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.39 E-value=3.5e+02 Score=26.97 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=64.5
Q ss_pred CCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhhcCcCCcccchhe-
Q 004561 565 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYG- 642 (745)
Q Consensus 565 ~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~er~~il~aL~cs~d~~ll~~~L~~~l~~~i~~qd~~~~- 642 (745)
.||+.++..+-+.. +-+..+|+.-.+..-.... +..-..|+.+|.+..++.+.-+|+... .+...+.+....
T Consensus 74 ~ip~~~~~~~~g~W-----~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 74 GIPPKYIKFIQGFW-----LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV-GPPLSSPEALTLY 147 (226)
T ss_pred CCCHHHHHHHHHHH-----HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCHHHHHHH
Confidence 48888876443322 2356778777777655533 344557999999999999999888864 344445444443
Q ss_pred ee-eccccHHHHHHHHHHhHHHH
Q 004561 643 LA-VSIEGRETAWKWLKDNWDHI 664 (745)
Q Consensus 643 ~~-v~~~g~~~~w~fl~~n~~~i 664 (745)
+. ++++....||.|.+.+-+..
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhh
Confidence 44 67779999999999887754
No 53
>PRK02870 heat shock protein HtpX; Provisional
Probab=42.87 E-value=51 Score=35.05 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCCccCeeecCC---CCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 004561 110 VKTLELYKEYFAVPYSLPKLDMIAIPD---FAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 181 (745)
Q Consensus 110 ~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 181 (745)
.++++-+....|+|+ .|++-++--+. |..|--..-+.|...+. ++- . -+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL~-~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LLE-K-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hhh-h-----CCHHHHHHHHHHHHHHH
Confidence 344555555567542 34554443322 22221122345555554 331 1 12346889999999996
No 54
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=42.61 E-value=17 Score=34.99 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 004561 165 ANKQRVATVVAHELAHQWFGN 185 (745)
Q Consensus 165 ~~~~~~~~~iaHElaHqWfGn 185 (745)
-....+..++.|||||.++|+
T Consensus 77 l~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCC
Confidence 345578999999999999887
No 55
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=41.90 E-value=17 Score=34.64 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 004561 170 VATVVAHELAHQW 182 (745)
Q Consensus 170 ~~~~iaHElaHqW 182 (745)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999997
No 56
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=39.80 E-value=52 Score=26.63 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=43.0
Q ss_pred CchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhcC
Q 004561 567 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 632 (745)
Q Consensus 567 ~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~er~~il~aL~cs~d~~ll~~~L~~~l~~ 632 (745)
++.+|..+.-+++. .++.+....+.+.. +..++.-|...+.|||...++..+..+.+.+.++
T Consensus 13 ~~~vr~~a~~~L~~---~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALGE---LGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHHC---CTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHH---cCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 56677654444443 55666677777766 5677788888999999988888777777765543
No 57
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=1.1e+02 Score=35.64 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhH-hhhhheeccccCCHHHHHHHHHHHHcC
Q 004561 523 ESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRKA-AYVAVMQKVSASDRSGYESLLRVYRET 600 (745)
Q Consensus 523 ~~~~~~~lr~~il~~ac~-~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~-vy~~~~~~~~~g~~~~~~~l~~~y~~~ 600 (745)
|..-.+.+|.+.++.||- +|.++ .|-.+.++...+ -+|-+|.. +|..++.-+..|+......|++--.+.
T Consensus 495 ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD 566 (929)
T KOG2062|consen 495 ETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD 566 (929)
T ss_pred hhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc
Confidence 444557889998888886 44443 454555555443 25667753 666555545577888888888865555
Q ss_pred CCHHHHHHHHHHhC--CCCCHHHHHHHHHHhhcC---cCCcccchheee-eccccHHHHHHHH
Q 004561 601 DLSQEKTRILSSLA--SCPDVNIVLEVLNFLLSS---EVRSQDAVYGLA-VSIEGRETAWKWL 657 (745)
Q Consensus 601 ~~~~er~~il~aL~--cs~d~~ll~~~L~~~l~~---~i~~qd~~~~~~-v~~~g~~~~w~fl 657 (745)
.+..-|+...-||| |++||+.+-+++.++-.. .||..-...+-. .+..|...+.+-+
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lL 629 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLL 629 (929)
T ss_pred cchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHH
Confidence 55556777777777 889999999988876433 466432211111 3344666666544
No 58
>PRK01265 heat shock protein HtpX; Provisional
Probab=39.29 E-value=61 Score=34.27 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCCCCccCeeecCC---CCCc-cccccccceeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 109 AVKTLELYKEYFAVPYSLPKLDMIAIPD---FAAG-AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 109 ~~~~l~~~e~~~g~~yP~~k~d~v~~p~---~~~g-amEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
..+.++-+.+..|+ |.|++-++-.+. |..| +..+ +-|...+. ++-. -+...+..++|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~g-Ll~~------l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAG-KRIAITLP-LLKI------LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCC-CEEEEehH-HHhh------CCHHHHHHHHHHHHHHHHcc
Confidence 34556666667775 466665554332 1122 1122 34444443 3211 12346889999999995443
No 59
>PLN03218 maturation of RBCL 1; Provisional
Probab=39.06 E-value=8.9e+02 Score=30.45 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhhcC
Q 004561 606 KTRILSSLASCPDVNIVLEVLNFLLSS 632 (745)
Q Consensus 606 r~~il~aL~cs~d~~ll~~~L~~~l~~ 632 (745)
-..++.+++...+.+...++++.+...
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 344666666666666666666655543
No 60
>PRK09687 putative lyase; Provisional
Probab=38.72 E-value=4.6e+02 Score=27.06 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcCCCHHH
Q 004561 528 ALLRGEIFTALALLGHKET--LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE 605 (745)
Q Consensus 528 ~~lr~~il~~ac~~g~~~c--~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e 605 (745)
..+|..++..++.++...+ ...+.+.....+.++ ++..|..+-.+++. .++....+.|..... ..++.-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~-----~~~VR~~a~~aLg~---~~~~~ai~~L~~~L~-d~~~~V 175 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK-----STNVRFAVAFALSV---INDEAAIPLLINLLK-DPNGDV 175 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC-----CHHHHHHHHHHHhc---cCCHHHHHHHHHHhc-CCCHHH
Confidence 3566666665555543322 123334444444331 55777755444433 567777888888775 455578
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHHHhhcC--cCCcccchheee-eccccHHHHHHHHHHhHHHHHHHhCCCcchhHHHHH
Q 004561 606 KTRILSSLASC--PDVNIVLEVLNFLLSS--EVRSQDAVYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFISS 680 (745)
Q Consensus 606 r~~il~aL~cs--~d~~ll~~~L~~~l~~--~i~~qd~~~~~~-v~~~g~~~~w~fl~~n~~~i~~~~~~~~~l~~ii~~ 680 (745)
|.....|||.. .++..+.-++..+-+. .||. ..+. ++.-+...+...|.+- +.++......+.+
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~----~A~~aLg~~~~~~av~~Li~~-------L~~~~~~~~a~~A 244 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRI----EAIIGLALRKDKRVLSVLIKE-------LKKGTVGDLIIEA 244 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHH----HHHHHHHccCChhHHHHHHHH-------HcCCchHHHHHHH
Confidence 88899999954 4676665555544322 1221 1222 3333444444444433 2223222345555
Q ss_pred hhccCCCHHHHHHHHHHHhcCCCc
Q 004561 681 IVSPFASYEKVREVEEFFSSRCKP 704 (745)
Q Consensus 681 ~~~~~~t~~~~~e~~~F~~~~~~~ 704 (745)
+ ..+.+++-+.-+....+..+.+
T Consensus 245 L-g~ig~~~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 245 A-GELGDKTLLPVLDTLLYKFDDN 267 (280)
T ss_pred H-HhcCCHhHHHHHHHHHhhCCCh
Confidence 4 5677787777777777655543
No 61
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=38.39 E-value=1.9e+02 Score=31.22 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHHHHcc-CCCHHHHHHHHHhcccCCcH--------HHHHHH----HHHHHHHHHHHhccChHHHH-HH
Q 004561 435 ETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YL 500 (745)
Q Consensus 435 ~~~r~~li~D~~~la~~g-~~~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~i~~~~~~~~~~~~~-~~ 500 (745)
+.+|..+|+|+..-.-++ .++|..-|.+++.-.+|-.+ .+|+.. ..-|..|...+... |+..+ .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 678999999996555444 47999999999877766543 345432 12244455554432 22222 12
Q ss_pred HHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcCCCCCCCCchhhhH
Q 004561 501 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 573 (745)
Q Consensus 501 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 573 (745)
..|+.+++.. ...-+|. ++..|...|.+ +|...|...|+.|... .+|++|.++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~~----~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRTA----RLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhhc----cccHHHHHH
Confidence 2333333331 1223444 55667788987 9999999999999753 478888763
No 62
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=36.12 E-value=4.7e+02 Score=26.44 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=106.2
Q ss_pred HHHHHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhhe
Q 004561 500 LKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVM 579 (745)
Q Consensus 500 ~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~ 579 (745)
+...+..-+..++..+--. +. +.++..+-...+.-+|.+||-++++.--.+| .....--.|+|.+.=-+=.+..
T Consensus 18 ~~~CLNr~Fd~vL~~~R~~--p~-~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~---Vmr~~~L~V~P~lLCDi~nlal 91 (267)
T PF05476_consen 18 YLQCLNREFDDVLAELRQI--PV-DEMDYSFLQLYLARSCQWGHVPSIDYIWYKY---VMRRKVLLVEPRLLCDIGNLAL 91 (267)
T ss_pred HHHHhhhhHHHHHHHHHcC--cH-hHhhHHHHHHHHHHHHHHhcchHHHHHHHHH---HhhccccccChhHHHHHHHHHH
Confidence 3444444445555554221 22 3466677788899999999999998865444 3322223567765531111111
Q ss_pred eccccCCHH-HHHHHHHHHHcCCCHHHHHHH--------HHHhCCCC-----CHHHHHHHHHHhhcCc------CCcccc
Q 004561 580 QKVSASDRS-GYESLLRVYRETDLSQEKTRI--------LSSLASCP-----DVNIVLEVLNFLLSSE------VRSQDA 639 (745)
Q Consensus 580 ~~~~~g~~~-~~~~l~~~y~~~~~~~er~~i--------l~aL~cs~-----d~~ll~~~L~~~l~~~------i~~qd~ 639 (745)
..-+.+-.+ .+...-+-|.+.....|...+ +.+.|-.. =.+.=+.+|+- +++. ++--|.
T Consensus 92 ~~~k~fip~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt~~~t~F~EKWkvfLed-mDn~Lp~~~~frVRDF 170 (267)
T PF05476_consen 92 HEGKYFIPSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGTMHKTTFREKWKVFLED-MDNTLPPQYPFRVRDF 170 (267)
T ss_pred hcCCCcCHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH-HhccCCCCCceeeccc
Confidence 111222222 232222233333321222222 22333222 11222334443 3332 333444
Q ss_pred hheee-eccccHHHHHHHHHHhHHHHHHHhCCCcchhHHHHHh--hccCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 004561 640 VYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFISSI--VSPFASYEKVREVEEFFSSRCKPYIARTLRQSIER 716 (745)
Q Consensus 640 ~~~~~-v~~~g~~~~w~fl~~n~~~i~~~~~~~~~l~~ii~~~--~~~~~t~~~~~e~~~F~~~~~~~~~~~~~~~~le~ 716 (745)
..+-. +.....+.+-+++-..=+ |. ..+..++.-+++.+ =..+..+..+.-++.|++.++.-....++.--+..
T Consensus 171 P~Lt~Sl~~~d~~~l~~~Lf~~~~-i~--IkN~~tlpLLLNmiLlQ~~~~~~~Ki~lF~~F~~~~~sl~l~DSi~IL~~~ 247 (267)
T PF05476_consen 171 PYLTKSLNQTDEDTLAKLLFTDNK-IT--IKNPSTLPLLLNMILLQPEFSLDFKIRLFKRFLESHPSLDLDDSIEILFHR 247 (267)
T ss_pred HHHHHHHhcccHHHHHHHHhhcCC-cc--ccCCCcHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 43333 333366777666654421 11 01223444444433 36788889999999999988644344443322222
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHh
Q 004561 717 VQINAKWVESIRNEGHLAEAVKEL 740 (745)
Q Consensus 717 i~~ni~W~~~~~~~~~i~~wl~~~ 740 (745)
. |-.|+.+ +.+++.+.
T Consensus 248 c--~~y~~~~------L~~~~~~~ 263 (267)
T PF05476_consen 248 C--NGYRISE------LLQFVRER 263 (267)
T ss_pred c--chHHHHH------HHHHHHHc
Confidence 2 4444432 66666654
No 63
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=35.59 E-value=49 Score=30.28 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCe
Q 004561 108 VAVKTLELYKEYFAVPYSLPKLDM 131 (745)
Q Consensus 108 ~~~~~l~~~e~~~g~~yP~~k~d~ 131 (745)
...+.++-.+..|.-+||.++...
T Consensus 6 ~L~~~~~~as~~~~r~~~~p~~~~ 29 (156)
T COG3091 6 KLQQCVEQASLKFFRKFFRPKASY 29 (156)
T ss_pred HHHHHHHHHHHHhcCCCCCcceeh
Confidence 344555555666665888887653
No 64
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=35.21 E-value=1.2e+02 Score=32.42 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCCCCccCeeecCCCCCccccccccceeecccccccCCCCcHHHHHHHHHHHHHHHH-H----------
Q 004561 112 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-H---------- 180 (745)
Q Consensus 112 ~l~~~e~~~g~~yP~~k~d~v~~p~~~~gamEn~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H---------- 180 (745)
+=++..+|++. . --++.+...++..++||-.-+-|.++.+..+ ....+..++.||+. |
T Consensus 118 ~~~~~~~y~~~-~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~f---------s~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFGK-E-GFEVKVELSDDLLARAMVSGDRLKINKNAMF---------SERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhcc-c-CceEEEEEcCCcchhhcccCCeeEEcCCCCc---------CHHHHHHHHHHhhhhhhccccccccC
Confidence 33445566662 2 1244455557777777765555555554211 23457889999994 5
Q ss_pred --HHhcccccccccchhHHHHHHHHHHHHHH
Q 004561 181 --QWFGNLVTMEWWTHLWLNEGFATWVSYLA 209 (745)
Q Consensus 181 --qWfGnlVt~~~w~~~WL~EGfA~y~~~~~ 209 (745)
.|++....+.. =..||+|.+.|++.
T Consensus 187 Pl~~l~~Glp~~~----~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGYT----PTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCCC----CCchHHHHHHHHHh
Confidence 24433222221 23799999999764
No 65
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=34.16 E-value=1.4e+02 Score=27.64 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.5
Q ss_pred eEEEEEEcCCcc---chHHHHHHHHHHHHHHHHHHhCCC
Q 004561 88 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVP 123 (745)
Q Consensus 88 ~~i~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~~g~~ 123 (745)
.++++|..+... .......+.+.+++...++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467888877643 234556778888888888876543
No 66
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=28 Score=36.04 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 004561 167 KQRVATVVAHELAHQWFGNL 186 (745)
Q Consensus 167 ~~~~~~~iaHElaHqWfGnl 186 (745)
...++.+++||+|||=-+..
T Consensus 272 ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999976643
No 67
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=8.2e+02 Score=29.80 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHHHHccCC-CHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhHHhh
Q 004561 434 SETDRFGILDDHFALCMARQQ-TLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 512 (745)
Q Consensus 434 ~~~~r~~li~D~~~la~~g~~-~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (745)
+...|.|+=.=+-....+.+. ....+++-++++-+-++...|..++-.|..+-+.++-...+.+..+..-+..++-.++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 667777765444455555554 2356777777776778888999999888888777652222233334443333333333
Q ss_pred hhc-CCccCCCCCHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhh-------cCC---CCCCCCchhhh
Q 004561 513 EKL-GWDSKPGESHLDALLRGEIFT---ALALLGHKETLNEASKRFHAFL-------ADR---TTPLLPPDIRK 572 (745)
Q Consensus 513 ~~l-g~~~~~~~~~~~~~lr~~il~---~ac~~g~~~c~~~a~~~f~~~~-------~~~---~~~~i~~dlr~ 572 (745)
+.. |.- ..++.....+..+|++ .+|.+..+.-+ .+.+.|..|+ +.+ ..-.++|+.|+
T Consensus 182 ~~~~~ll--~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIFNGLL--SQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHHHhhc--cccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 221 111 1224444455555555 55555543222 2333444443 322 12346777776
No 68
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=31.51 E-value=39 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=18.1
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004561 156 LYDDQHSAAANKQRVATVVAHELAHQWFG 184 (745)
Q Consensus 156 l~~~~~~~~~~~~~~~~~iaHElaHqWfG 184 (745)
+|+.........-.+-.+|||||.|-.-.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~ 50 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDP 50 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTST
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556778999999997643
No 69
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.57 E-value=1.1e+02 Score=24.18 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhhcCC
Q 004561 264 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 311 (745)
Q Consensus 264 ga~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~~~~ 311 (745)
=+.++.+|...++.+.+. .|..+++.++-+-++-++|...+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~~-~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKMD-LLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 467899999999988854 55666677777889999999999988884
No 70
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=28.83 E-value=66 Score=31.24 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 004561 168 QRVATVVAHELAHQ 181 (745)
Q Consensus 168 ~~~~~~iaHElaHq 181 (745)
...+.++|||++|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35678999999995
No 71
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=28.73 E-value=2e+02 Score=21.11 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHh
Q 004561 686 ASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 740 (745)
Q Consensus 686 ~t~~~~~e~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~~ 740 (745)
-|.+++..|+++|..++-|.... ++.|...+ .....+|..|+++.
T Consensus 7 ~t~~q~~~L~~~f~~~~~p~~~~-----~~~la~~l-----~l~~~~V~~WF~nr 51 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQENPYPSKEE-----REELAKEL-----GLTERQVKNWFQNR 51 (57)
T ss_dssp SSHHHHHHHHHHHHHSSSCHHHH-----HHHHHHHH-----TSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccccc-----cccccccc-----cccccccccCHHHh
Confidence 47899999999999877664332 12222222 23333488999865
No 72
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=28.64 E-value=1e+02 Score=30.50 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 004561 170 VATVVAHELAHQW 182 (745)
Q Consensus 170 ~~~~iaHElaHqW 182 (745)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 73
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=27.47 E-value=1.5e+02 Score=31.08 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHhh
Q 004561 692 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKELA 741 (745)
Q Consensus 692 ~e~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~i~~wl~~~~ 741 (745)
-+++.|.+........+.+++-++.|+.|.+|+++.+.. .+|.+|.++..
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 457888887666688899999999999999999987655 45778887653
No 74
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.35 E-value=8.1e+02 Score=28.16 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHcC
Q 004561 528 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRET 600 (745)
Q Consensus 528 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~ 600 (745)
...|..++......|..+|+....+++.. ..+++.....++..+...++.-+.+..+.++++.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~-------~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~ 405 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN-------KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESP 405 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCc
Confidence 35666666777777777776665544432 2255444444444444445556666666666666543
No 75
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.15 E-value=3.4e+02 Score=23.37 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHhCCCcchhHHHHHhhccCCCHHHHHHHHH
Q 004561 653 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEE 696 (745)
Q Consensus 653 ~w~fl~~n~~~i~~~~~~~~~l~~ii~~~~~~~~t~~~~~e~~~ 696 (745)
.|+|+++||..|..-++.. ...+.--+.+.+.+.++++++.+
T Consensus 1 ~~~~~~~~w~ii~a~~~~~--~~~~~~~l~~~~a~~~~~~~l~~ 42 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGIA--GGIFWLWLRRTYAKREDIEKLEE 42 (106)
T ss_pred ChHHHHhCcHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHH
Confidence 4899999999988766321 22333335666777777777633
No 76
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=1.4e+02 Score=35.19 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCccCeeecCCCC--Cccccccccc---eeecccccccCCCCc
Q 004561 89 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--AGAMENYGLV---TYRETALLYDDQHSA 163 (745)
Q Consensus 89 ~i~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~d~v~~p~~~--~gamEn~gli---~~~e~~ll~~~~~~~ 163 (745)
-+.+|+.++.......+.+.....+.+=..++...-|.+-..++..-.|. ..|+...|-+ .+++.-..+.++
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 36788888877666666666666677666666533344433333321221 1233332211 122221111111
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004561 164 AANKQRVATVVAHELAHQ 181 (745)
Q Consensus 164 ~~~~~~~~~~iaHElaHq 181 (745)
.....+.++||||+|.
T Consensus 319 --~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 --ILLAFAVVLAHELGHN 334 (716)
T ss_pred --cchhHHHHHHHHHHhh
Confidence 1235788999999996
No 77
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=25.50 E-value=6.4e+02 Score=27.56 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred cccccchhHHHHHHHHhhCHH--HHHHH--------HHHHHHhhccC---CCCHHHHHHHHHhhcCCCHH
Q 004561 258 AISYRKGASVIRMLQNYLGAE--CFQRS--------LASYIKKYACS---NAKTEDLWAALEEGSGEPVN 314 (745)
Q Consensus 258 ~i~Y~Kga~vl~mL~~~lG~e--~F~~~--------l~~yl~~~~~~---~~~~~dl~~~l~~~~~~~~~ 314 (745)
.-+|.-|.++-.+|-+.+-++ .+... +..+|+++-++ .-++.++ +++++|.++.
T Consensus 317 fptYalG~l~Aaql~~~~~~~~~~~~~~i~~g~f~~~~~wL~e~i~~~G~~~~p~eL---l~~atG~~l~ 383 (396)
T cd06460 317 FPTYTLGNLYAAQLFAAAKKDLPDIDEQIERGDFSPLLEWLRENIHQHGSRYSPDEL---LKKATGEPLN 383 (396)
T ss_pred CchhHHHHHHHHHHHHHHHHhCccHHHHHhccChHHHHHHHHHHHHhccCCCCHHHH---HHHHhCCCCC
Confidence 446888888877776666443 24443 77777665332 3567766 5667777643
No 78
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=25.02 E-value=1.8e+02 Score=27.63 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004561 167 KQRVATVVAHELAHQWF 183 (745)
Q Consensus 167 ~~~~~~~iaHElaHqWf 183 (745)
+..+..+++|||.|.|=
T Consensus 68 ~~~l~~~l~HELIHayD 84 (173)
T PF09768_consen 68 QGHLEDTLTHELIHAYD 84 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44578899999999983
No 79
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=24.79 E-value=44 Score=27.12 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCCCccCeeecCCCCC--ccccccccceeecccccccCCC---CcHHHHHHHHHHHHHHHHHHH
Q 004561 111 KTLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 182 (745)
Q Consensus 111 ~~l~~~e~~~g~~yP~~k~d~v~~p~~~~--gamEn~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 182 (745)
.+...+|..||.+ +.+..+-.-|.-.. .+|. .--+|.... +.+.+.. ++. .-..+++||++|-+
T Consensus 5 ~~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 5 SIRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 3456789999954 55555544332111 1111 112333333 3332211 111 12468999999964
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.06 E-value=1.2e+03 Score=27.49 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=23.9
Q ss_pred HHcCCCHHHHHHHHHH-----hCCCCC-HHHHHHHHHHh-hcCcCCcccch-heee
Q 004561 597 YRETDLSQEKTRILSS-----LASCPD-VNIVLEVLNFL-LSSEVRSQDAV-YGLA 644 (745)
Q Consensus 597 y~~~~~~~er~~il~a-----L~cs~d-~~ll~~~L~~~-l~~~i~~qd~~-~~~~ 644 (745)
|..+.+.+-|..|.-- =-.+.| .|.+.-.|+++ +.+++-+.++. .++.
T Consensus 412 YL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQ 467 (938)
T KOG1077|consen 412 YLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQ 467 (938)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhe
Confidence 6666666655553221 123333 56666666655 23455555554 3344
No 81
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=23.40 E-value=48 Score=32.04 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 004561 169 RVATVVAHELAHQW 182 (745)
Q Consensus 169 ~~~~~iaHElaHqW 182 (745)
....++||||+|.+
T Consensus 141 ~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 141 NGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ceehhhHHhHHHhc
Confidence 45689999999997
No 82
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=22.24 E-value=3.1e+02 Score=21.35 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Q 004561 687 SYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKE 739 (745)
Q Consensus 687 t~~~~~e~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~i~~wl~~ 739 (745)
+-..+.++..||...|. +....+-+-|-......++.+-+.. +.++++.
T Consensus 12 ~kK~i~~v~~FF~~DPl--GqkIa~l~kdw~~~~~~~r~KiR~~--L~ey~k~ 60 (64)
T PF05596_consen 12 VKKWIEEVRNFFYEDPL--GQKIAQLAKDWNEICQEVRKKIRAA--LAEYCKG 60 (64)
T ss_pred HHHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45678999999998763 3333344444444555555554444 6666653
No 83
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=21.95 E-value=3.5e+02 Score=28.77 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=68.4
Q ss_pred hHHHHHHHH-HHHHHccCCCHHHHHHHHHhcccCCc--------HHHHHHH--H--HHHHHHHHHHhccChHHHH-HHHH
Q 004561 437 DRFGILDDH-FALCMARQQTLTSLLTLMASYSEETE--------YTVLSNL--I--TISYKIGRIAADARPELLD-YLKQ 502 (745)
Q Consensus 437 ~r~~li~D~-~~la~~g~~~~~~~l~l~~~l~~E~~--------~~~w~~~--~--~~l~~i~~~~~~~~~~~~~-~~~~ 502 (745)
++-|+|||+ -+|.-+..++|..-|.|+.--..|.. ..+|+-. + -.|..|...+... |+..+ .+..
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~-p~l~nll~d~ 397 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRN-PDLANLLLDP 397 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcC-ccHhhhccCH
Confidence 489999998 44555666899999999875544432 3455431 1 1134455555442 33221 1222
Q ss_pred HHHHHhHHhhhhcCCccCCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcCCCCCCCCchhhhH
Q 004561 503 FFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 573 (745)
Q Consensus 503 ~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 573 (745)
|+.+.+... ..-.| .++..|..+|.+ +|...|...|+-|.. ..+|+++.++
T Consensus 398 fF~~~v~~~---------------q~~wr-~vV~~a~~~gIptP~~st~Lafydgyr~----e~lpaNllQA 449 (487)
T KOG2653|consen 398 FFAKAVEEA---------------QDSWR-RVVALAVEAGIPTPAFSTALAFYDGYRS----ERLPANLLQA 449 (487)
T ss_pred HHHHHHHHH---------------HHHHH-HHHHHHHhcCCCChhHHHHHHHHhhhhh----hcCcHHHHHH
Confidence 333332211 11222 356677788876 899999999998864 3589988874
No 84
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=21.44 E-value=1.3e+02 Score=29.59 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcccc-----cccccchhHHHHHHHHHHHHH
Q 004561 170 VATVVAHELAHQWFGNLV-----TMEWWTHLWLNEGFATWVSYL 208 (745)
Q Consensus 170 ~~~~iaHElaHqWfGnlV-----t~~~w~~~WL~EGfA~y~~~~ 208 (745)
-.-++|||++|-|+..-. ....|...=.-|.-|++++..
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 356899999999997543 112222333466677776643
No 85
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=21.39 E-value=1.5e+03 Score=27.52 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=104.0
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhHHhhhhcCCccC
Q 004561 441 ILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSK 520 (745)
Q Consensus 441 li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~ 520 (745)
.+.-.-+++-.+.++......+++.|-+|.+-.-|...-+.+ .|+.+..++..-+..+- .+
T Consensus 105 ~l~~l~aL~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~-------------~~~Il~~~l~~~~~~l~-s~----- 165 (1030)
T KOG1967|consen 105 VLGGLKALILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLL-------------QYEILEWFLDYRLEFLK-SL----- 165 (1030)
T ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhh-------------HHHHHHHHHHHHHHHHh-cc-----
Confidence 334445556666677777777777777776666555443321 22233333322222110 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-CCCCCCCCchhhhHhhhhheeccccCCHHHHHHHHHHHHc
Q 004561 521 PGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA-DRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRE 599 (745)
Q Consensus 521 ~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~-~~~~~~i~~dlr~~vy~~~~~~~~~g~~~~~~~l~~~y~~ 599 (745)
+ ...+-..++..+..-.++.|+--+-.+++.... +.+-...-.|+-+.++|++=...+..-.+... +
T Consensus 166 -~----~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~-I------ 233 (1030)
T KOG1967|consen 166 -G----PDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTIT-I------ 233 (1030)
T ss_pred -c----chHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCccc-c------
Confidence 1 112223344444444577899888888888764 21112244567777777664322221111110 0
Q ss_pred CCCHHHHHHHHHHhCCCCC--HHHHHHHHHHhhcCcCC-cccchheee-eccc-cHHHHHHHHHHhHHHHHHHhCC
Q 004561 600 TDLSQEKTRILSSLASCPD--VNIVLEVLNFLLSSEVR-SQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS 670 (745)
Q Consensus 600 ~~~~~er~~il~aL~cs~d--~~ll~~~L~~~l~~~i~-~qd~~~~~~-v~~~-g~~~~w~fl~~n~~~i~~~~~~ 670 (745)
....-+..+..||++++- |..+--+++.+-+...+ .-|....+. .... |......+.+.+|+.|+.-+++
T Consensus 234 -~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 234 -RREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred -cHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 112235567788887764 44444455544333222 236666665 4444 7777788889999999987764
No 86
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=20.45 E-value=57 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHHhhCHHHHHHHHHHHHHhhccCCCCHHH
Q 004561 271 LQNYLGAECFQRSLASYIKKYACSNAKTED 300 (745)
Q Consensus 271 L~~~lG~e~F~~~l~~yl~~~~~~~~~~~d 300 (745)
++..||++.|....+.|+.++.-.+.+..+
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 456789999999999999998755554433
No 87
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=23 Score=39.53 Aligned_cols=36 Identities=25% Similarity=0.548 Sum_probs=26.7
Q ss_pred cceeecccc---cccCCCCcHHHHHHHHHHHHHHHHHHH
Q 004561 147 LVTYRETAL---LYDDQHSAAANKQRVATVVAHELAHQW 182 (745)
Q Consensus 147 li~~~e~~l---l~~~~~~~~~~~~~~~~~iaHElaHqW 182 (745)
.|+|+...| +|+++.++..+.-.+-.+|+|||.|.+
T Consensus 461 ~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgF 499 (654)
T COG3590 461 EIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGF 499 (654)
T ss_pred eEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccc
Confidence 566665522 467776677777788899999999976
Done!